Query 021654
Match_columns 309
No_of_seqs 418 out of 2342
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 04:39:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021654.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021654hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01118 lacA galactose-6-pho 100.0 1.3E-56 2.8E-61 377.5 15.4 136 13-156 1-139 (141)
2 PRK08621 galactose-6-phosphate 100.0 2.2E-56 4.7E-61 376.6 15.6 136 13-156 1-139 (142)
3 PRK12613 galactose-6-phosphate 100.0 2.4E-56 5.2E-61 375.9 15.5 136 13-156 1-138 (141)
4 PRK05571 ribose-5-phosphate is 100.0 8.1E-56 1.7E-60 376.3 15.6 139 13-159 1-145 (148)
5 PRK08622 galactose-6-phosphate 100.0 1.6E-55 3.5E-60 380.7 15.7 143 13-162 1-148 (171)
6 TIGR01119 lacB galactose-6-pho 100.0 2.4E-55 5.1E-60 380.1 16.1 144 13-163 1-149 (171)
7 PTZ00215 ribose 5-phosphate is 100.0 3E-55 6.5E-60 373.7 16.0 141 11-159 1-148 (151)
8 TIGR01120 rpiB ribose 5-phosph 100.0 1.5E-55 3.4E-60 372.6 13.9 128 14-145 1-133 (143)
9 PRK12615 galactose-6-phosphate 100.0 5.1E-55 1.1E-59 378.0 15.8 140 13-159 1-145 (171)
10 TIGR02133 RPI_actino ribose 5- 100.0 2.1E-54 4.6E-59 368.1 15.6 139 13-158 1-145 (148)
11 COG0698 RpiB Ribose 5-phosphat 100.0 1.1E-54 2.4E-59 367.6 13.4 140 13-160 1-147 (151)
12 TIGR00689 rpiB_lacA_lacB sugar 100.0 2.1E-54 4.7E-59 366.1 14.9 136 15-158 1-141 (144)
13 PF02502 LacAB_rpiB: Ribose/Ga 100.0 1.2E-53 2.6E-58 360.7 8.8 124 14-141 1-129 (140)
14 PRK09273 hypothetical protein; 100.0 3.1E-48 6.6E-53 344.0 14.1 150 13-171 1-165 (211)
15 PF07883 Cupin_2: Cupin domain 99.4 1.2E-12 2.6E-17 96.7 9.4 68 217-286 2-70 (71)
16 PRK09943 DNA-binding transcrip 99.2 2.3E-10 5E-15 100.8 14.3 142 128-288 34-181 (185)
17 PRK13290 ectC L-ectoine syntha 99.2 2.9E-10 6.2E-15 94.8 13.4 65 216-281 38-103 (125)
18 COG1917 Uncharacterized conser 99.2 7.2E-11 1.6E-15 98.3 9.2 63 216-280 46-109 (131)
19 COG0662 {ManC} Mannose-6-phosp 99.2 2.2E-10 4.7E-15 95.5 11.3 83 200-284 21-106 (127)
20 TIGR01479 GMP_PMI mannose-1-ph 99.1 8.1E-10 1.7E-14 110.8 12.5 91 198-290 359-452 (468)
21 PF01050 MannoseP_isomer: Mann 99.1 1.6E-09 3.6E-14 93.0 11.6 85 198-284 46-133 (151)
22 PRK15460 cpsB mannose-1-phosph 99.0 1.4E-09 3E-14 109.2 11.8 90 199-290 369-461 (478)
23 TIGR03404 bicupin_oxalic bicup 99.0 4.8E-09 1E-13 102.2 14.0 93 191-284 217-320 (367)
24 TIGR03214 ura-cupin putative a 99.0 2.9E-09 6.3E-14 99.1 10.4 67 216-284 182-249 (260)
25 smart00835 Cupin_1 Cupin. This 99.0 9E-09 2E-13 87.4 11.7 71 216-286 33-108 (146)
26 PF12973 Cupin_7: ChrR Cupin-l 98.9 8.4E-09 1.8E-13 80.8 9.9 79 200-284 6-89 (91)
27 PRK11171 hypothetical protein; 98.9 5.9E-09 1.3E-13 97.4 9.9 68 216-285 187-255 (266)
28 PRK11171 hypothetical protein; 98.8 3.1E-08 6.8E-13 92.5 12.3 70 216-287 64-135 (266)
29 COG3837 Uncharacterized conser 98.8 1.9E-08 4.2E-13 85.8 8.8 72 216-289 45-120 (161)
30 TIGR03404 bicupin_oxalic bicup 98.8 3.9E-08 8.5E-13 95.8 12.0 79 200-278 47-135 (367)
31 TIGR03214 ura-cupin putative a 98.8 4E-08 8.7E-13 91.5 10.7 70 216-287 61-132 (260)
32 PF00190 Cupin_1: Cupin; Inte 98.8 9.2E-08 2E-12 81.0 11.7 63 216-278 37-109 (144)
33 TIGR03037 anthran_nbaC 3-hydro 98.7 7E-08 1.5E-12 83.3 10.0 62 221-282 36-99 (159)
34 COG4101 Predicted mannose-6-ph 98.7 3.2E-08 7E-13 80.8 7.4 68 216-283 49-118 (142)
35 PRK13264 3-hydroxyanthranilate 98.7 9.3E-08 2E-12 83.7 10.1 62 221-282 42-105 (177)
36 PF02311 AraC_binding: AraC-li 98.7 9.7E-08 2.1E-12 77.2 8.1 59 222-282 12-70 (136)
37 PRK04190 glucose-6-phosphate i 98.7 2.7E-07 5.8E-12 82.3 11.3 70 216-285 71-152 (191)
38 COG2140 Thermophilic glucose-6 98.6 2.9E-07 6.4E-12 82.4 10.2 72 215-286 82-159 (209)
39 PRK15457 ethanolamine utilizat 98.5 1.2E-06 2.5E-11 79.7 12.6 71 216-290 160-231 (233)
40 PF02041 Auxin_BP: Auxin bindi 98.5 7.6E-07 1.6E-11 75.5 9.6 67 216-282 47-121 (167)
41 PRK10371 DNA-binding transcrip 98.4 7.8E-07 1.7E-11 84.3 7.6 63 217-281 30-92 (302)
42 TIGR02451 anti_sig_ChrR anti-s 98.3 3.7E-06 7.9E-11 76.3 8.4 70 215-290 129-200 (215)
43 PRK10296 DNA-binding transcrip 98.2 7.8E-06 1.7E-10 75.8 8.8 52 223-276 33-84 (278)
44 PRK13501 transcriptional activ 98.1 6.6E-06 1.4E-10 76.9 7.7 57 222-280 27-83 (290)
45 PRK13500 transcriptional activ 98.0 1.4E-05 3E-10 76.0 8.0 56 223-280 58-113 (312)
46 PRK13502 transcriptional activ 98.0 1.3E-05 2.7E-10 74.5 7.6 58 221-280 26-83 (282)
47 TIGR02297 HpaA 4-hydroxyphenyl 98.0 1.4E-05 3E-10 74.3 7.1 56 223-280 33-89 (287)
48 PF11699 CENP-C_C: Mif2/CENP-C 98.0 6.5E-05 1.4E-09 58.6 9.5 68 216-285 15-83 (85)
49 PLN00212 glutelin; Provisional 98.0 3.9E-05 8.5E-10 77.3 10.3 67 216-282 83-177 (493)
50 COG3257 GlxB Uncharacterized p 98.0 4.5E-05 9.7E-10 68.7 9.0 72 216-289 64-137 (264)
51 PRK13503 transcriptional activ 97.9 1.5E-05 3.2E-10 73.6 5.3 55 222-278 24-78 (278)
52 PF14499 DUF4437: Domain of un 97.9 5.1E-05 1.1E-09 70.3 8.6 74 215-292 38-114 (251)
53 TIGR02272 gentisate_1_2 gentis 97.8 7.2E-05 1.6E-09 72.1 8.5 66 216-282 84-149 (335)
54 PF14499 DUF4437: Domain of un 97.8 5.5E-05 1.2E-09 70.1 6.7 108 184-291 133-250 (251)
55 PF03079 ARD: ARD/ARD' family; 97.8 0.00016 3.6E-09 62.5 9.0 56 226-281 85-143 (157)
56 PF06339 Ectoine_synth: Ectoin 97.8 0.00057 1.2E-08 56.7 11.6 85 201-285 19-107 (126)
57 COG3435 Gentisate 1,2-dioxygen 97.5 0.00018 4E-09 67.7 6.1 79 216-297 95-173 (351)
58 PF05523 FdtA: WxcM-like, C-te 97.5 0.00061 1.3E-08 57.2 8.1 69 219-287 39-111 (131)
59 PF05899 Cupin_3: Protein of u 97.4 0.00048 1E-08 52.0 6.7 58 217-277 11-68 (74)
60 PF06052 3-HAO: 3-hydroxyanthr 97.4 0.0035 7.7E-08 53.5 12.3 67 217-283 37-105 (151)
61 PF06560 GPI: Glucose-6-phosph 97.4 0.00071 1.5E-08 59.9 8.4 67 217-283 54-140 (182)
62 TIGR02272 gentisate_1_2 gentis 97.4 0.00059 1.3E-08 65.9 8.0 64 216-281 253-316 (335)
63 PF06249 EutQ: Ethanolamine ut 97.3 0.00099 2.1E-08 57.3 8.0 69 216-289 80-150 (152)
64 PLN00212 glutelin; Provisional 97.2 0.0026 5.6E-08 64.4 10.4 64 216-279 351-419 (493)
65 COG4766 EutQ Ethanolamine util 97.0 0.0033 7.2E-08 53.8 7.4 70 216-289 103-173 (176)
66 COG3435 Gentisate 1,2-dioxygen 96.9 0.0028 6.1E-08 59.9 7.2 68 217-286 265-332 (351)
67 COG1791 Uncharacterized conser 96.9 0.0047 1E-07 53.8 7.8 56 226-281 88-146 (181)
68 PF05995 CDO_I: Cysteine dioxy 96.8 0.013 2.7E-07 51.5 10.0 78 205-282 65-157 (175)
69 COG3257 GlxB Uncharacterized p 96.7 0.0042 9.2E-08 56.2 6.2 65 216-282 185-250 (264)
70 COG3806 ChrR Transcriptional a 96.6 0.015 3.3E-07 51.8 9.0 93 195-293 106-204 (216)
71 KOG2107 Uncharacterized conser 96.4 0.0057 1.2E-07 53.0 5.2 54 225-278 85-141 (179)
72 COG4297 Uncharacterized protei 96.4 0.017 3.7E-07 48.8 7.6 83 223-306 52-143 (163)
73 PRK10572 DNA-binding transcrip 96.3 0.01 2.2E-07 55.3 6.7 48 229-278 45-92 (290)
74 PF09313 DUF1971: Domain of un 96.0 0.08 1.7E-06 41.0 9.1 55 228-282 18-80 (82)
75 COG3450 Predicted enzyme of th 95.6 0.05 1.1E-06 44.8 7.1 59 216-278 48-107 (116)
76 PF02678 Pirin: Pirin; InterP 95.5 0.081 1.8E-06 42.9 7.9 58 223-281 39-100 (107)
77 COG3822 ABC-type sugar transpo 95.5 0.047 1E-06 48.5 6.9 62 216-279 89-179 (225)
78 PF08007 Cupin_4: Cupin superf 95.4 0.11 2.3E-06 49.9 9.8 58 220-277 120-200 (319)
79 PF07385 DUF1498: Protein of u 95.3 0.069 1.5E-06 48.6 7.5 64 216-279 90-180 (225)
80 PRK02261 methylaspartate mutas 95.0 0.52 1.1E-05 39.8 11.5 129 11-164 2-135 (137)
81 PF12852 Cupin_6: Cupin 94.8 0.11 2.4E-06 45.3 7.4 45 234-278 36-80 (186)
82 PF13621 Cupin_8: Cupin-like d 94.6 0.24 5.2E-06 44.4 9.2 56 221-276 139-232 (251)
83 COG1898 RfbC dTDP-4-dehydrorha 94.5 0.11 2.4E-06 45.7 6.6 66 222-287 54-132 (173)
84 COG1741 Pirin-related protein 94.4 0.09 2E-06 49.6 6.0 57 219-276 50-109 (276)
85 PRK09685 DNA-binding transcrip 94.4 0.16 3.4E-06 47.4 7.7 47 234-282 72-118 (302)
86 TIGR01501 MthylAspMutase methy 94.0 0.68 1.5E-05 39.1 9.9 113 27-163 18-132 (134)
87 PF14272 Gly_rich_SFCGS: Glyci 93.9 0.14 2.9E-06 40.8 5.1 77 54-136 36-113 (115)
88 PF05726 Pirin_C: Pirin C-term 93.3 0.64 1.4E-05 37.1 8.3 84 218-305 4-99 (104)
89 PF11142 DUF2917: Protein of u 93.0 0.23 5.1E-06 36.4 4.9 55 218-273 2-56 (63)
90 TIGR01221 rmlC dTDP-4-dehydror 92.8 0.57 1.2E-05 41.3 8.0 62 221-282 52-127 (176)
91 PF02373 JmjC: JmjC domain, hy 92.8 0.14 3.1E-06 40.5 3.9 29 253-281 81-109 (114)
92 PF00908 dTDP_sugar_isom: dTDP 92.8 0.97 2.1E-05 39.8 9.5 62 221-282 51-127 (176)
93 PF04209 HgmA: homogentisate 1 92.1 0.59 1.3E-05 46.6 7.9 53 231-285 144-196 (424)
94 PF05118 Asp_Arg_Hydrox: Aspar 91.4 0.43 9.4E-06 41.3 5.5 66 216-283 83-154 (163)
95 TIGR00218 manA mannose-6-phosp 91.3 1.6 3.4E-05 41.5 9.7 50 231-283 251-300 (302)
96 TIGR03577 EF_0830 conserved hy 91.3 0.51 1.1E-05 37.6 5.2 76 54-136 36-113 (115)
97 PF14525 AraC_binding_2: AraC- 91.2 1.2 2.6E-05 37.2 7.9 47 234-282 56-102 (172)
98 KOG3995 3-hydroxyanthranilate 90.4 0.59 1.3E-05 42.4 5.4 59 219-277 39-99 (279)
99 PF04962 KduI: KduI/IolB famil 90.1 1.4 3.1E-05 41.2 8.1 67 216-284 30-105 (261)
100 KOG2757 Mannose-6-phosphate is 90.0 0.81 1.8E-05 44.6 6.4 60 217-278 337-397 (411)
101 PRK12335 tellurite resistance 89.9 0.72 1.6E-05 43.3 6.0 64 222-285 20-91 (287)
102 PHA00672 hypothetical protein 89.6 1.7 3.6E-05 36.4 7.1 82 216-307 50-133 (152)
103 TIGR01015 hmgA homogentisate 1 89.3 1.4 3E-05 44.0 7.6 53 230-284 145-197 (429)
104 PF07847 DUF1637: Protein of u 88.6 2.6 5.6E-05 38.0 8.3 67 216-282 47-138 (200)
105 PRK10579 hypothetical protein; 88.6 3.4 7.4E-05 32.8 7.9 49 233-281 41-89 (94)
106 PF06865 DUF1255: Protein of u 88.4 3.1 6.8E-05 33.0 7.6 50 233-282 41-90 (94)
107 cd02071 MM_CoA_mut_B12_BD meth 87.8 7 0.00015 31.8 9.8 102 28-160 17-121 (122)
108 PRK00924 5-keto-4-deoxyuronate 87.8 3.4 7.4E-05 39.0 8.8 56 217-274 56-113 (276)
109 cd02072 Glm_B12_BD B12 binding 87.4 11 0.00023 31.6 10.7 100 27-147 16-117 (128)
110 COG2850 Uncharacterized conser 87.2 0.49 1.1E-05 46.2 2.9 63 220-282 126-208 (383)
111 PF02302 PTS_IIB: PTS system, 86.8 0.31 6.8E-06 37.2 1.1 20 71-90 1-21 (90)
112 PRK15131 mannose-6-phosphate i 86.5 2.8 6E-05 41.5 7.9 48 232-282 338-385 (389)
113 COG1482 ManA Phosphomannose is 86.4 7.4 0.00016 37.5 10.4 38 231-270 258-295 (312)
114 PRK05341 homogentisate 1,2-dio 86.1 2.7 5.8E-05 42.1 7.4 53 230-284 151-204 (438)
115 cd05564 PTS_IIB_chitobiose_lic 84.8 0.31 6.8E-06 38.4 0.2 19 72-90 2-20 (96)
116 PLN02288 mannose-6-phosphate i 84.6 2.4 5.2E-05 42.1 6.4 52 217-270 338-391 (394)
117 TIGR00640 acid_CoA_mut_C methy 84.2 9.7 0.00021 31.8 9.0 121 13-162 3-126 (132)
118 PLN02658 homogentisate 1,2-dio 84.1 3.7 8E-05 41.1 7.4 53 230-284 144-197 (435)
119 TIGR00853 pts-lac PTS system, 83.7 0.44 9.6E-06 37.6 0.7 22 70-91 4-25 (95)
120 PRK09590 celB cellobiose phosp 82.9 0.59 1.3E-05 37.7 1.1 20 71-90 3-22 (104)
121 PF03698 UPF0180: Uncharacteri 82.8 1 2.3E-05 34.7 2.4 20 28-47 11-30 (80)
122 COG0127 Xanthosine triphosphat 82.1 1.5 3.3E-05 39.3 3.5 81 12-100 1-92 (194)
123 TIGR02667 moaB_proteo molybden 82.0 2.1 4.6E-05 37.0 4.3 107 29-139 26-153 (163)
124 cd05568 PTS_IIB_bgl_like PTS_I 81.3 0.63 1.4E-05 34.9 0.7 20 71-90 2-22 (85)
125 PF02878 PGM_PMM_I: Phosphoglu 81.2 5.2 0.00011 33.2 6.3 95 12-139 40-136 (137)
126 cd05566 PTS_IIB_galactitol PTS 81.2 0.6 1.3E-05 35.7 0.5 20 71-90 2-22 (89)
127 PRK10310 PTS system galactitol 81.0 0.99 2.1E-05 35.5 1.7 48 71-120 4-59 (94)
128 PRK03094 hypothetical protein; 80.6 1.2 2.7E-05 34.3 2.1 18 29-46 12-29 (80)
129 cd00886 MogA_MoaB MogA_MoaB fa 80.2 2.6 5.7E-05 35.8 4.2 49 29-81 24-74 (152)
130 PRK10499 PTS system N,N'-diace 79.7 0.83 1.8E-05 36.8 0.9 20 71-90 5-24 (106)
131 cd05567 PTS_IIB_mannitol PTS_I 78.9 0.8 1.7E-05 35.2 0.6 20 71-90 2-22 (87)
132 PF13759 2OG-FeII_Oxy_5: Putat 78.2 5.4 0.00012 31.3 5.2 24 254-277 67-90 (101)
133 COG5553 Predicted metal-depend 78.1 7.5 0.00016 34.0 6.3 63 216-279 76-147 (191)
134 PRK15414 phosphomannomutase Cp 77.6 15 0.00033 36.8 9.5 93 14-139 40-135 (456)
135 cd02067 B12-binding B12 bindin 77.5 7 0.00015 31.3 5.8 28 19-47 9-36 (119)
136 COG1482 ManA Phosphomannose is 77.3 2 4.3E-05 41.3 2.8 21 253-273 158-178 (312)
137 PF04962 KduI: KduI/IolB famil 77.2 7.6 0.00017 36.3 6.7 60 225-285 165-241 (261)
138 PRK14314 glmM phosphoglucosami 76.9 7.6 0.00016 38.8 7.1 41 14-54 44-86 (450)
139 PRK14324 glmM phosphoglucosami 76.3 7.4 0.00016 39.0 6.8 57 14-78 41-99 (446)
140 cd00758 MoCF_BD MoCF_BD: molyb 76.0 4.4 9.4E-05 33.5 4.3 47 29-81 23-71 (133)
141 COG3718 IolB Uncharacterized e 75.7 17 0.00037 33.7 8.2 70 216-287 32-111 (270)
142 TIGR00218 manA mannose-6-phosp 75.4 1.5 3.4E-05 41.5 1.6 21 253-273 151-171 (302)
143 COG3615 TehB Uncharacterized p 75.3 7.8 0.00017 30.9 5.2 61 228-295 29-98 (99)
144 PRK14315 glmM phosphoglucosami 75.2 8.9 0.00019 38.3 7.0 42 14-55 44-87 (448)
145 cd02070 corrinoid_protein_B12- 74.9 6.8 0.00015 34.8 5.5 67 12-82 82-177 (201)
146 PF00994 MoCF_biosynth: Probab 74.8 4.4 9.6E-05 33.8 4.1 49 28-82 20-70 (144)
147 PRK14316 glmM phosphoglucosami 74.0 8.7 0.00019 38.3 6.6 45 13-57 41-87 (448)
148 PRK15131 mannose-6-phosphate i 73.5 3.1 6.8E-05 41.2 3.2 22 253-274 237-258 (389)
149 COG3123 Uncharacterized protei 73.4 14 0.00029 28.9 5.9 49 233-281 41-89 (94)
150 COG3414 SgaB Phosphotransferas 72.9 1.8 3.9E-05 34.2 1.1 16 71-86 3-18 (93)
151 PF10137 TIR-like: Predicted n 72.3 19 0.00041 30.0 7.2 57 14-77 1-59 (125)
152 PRK14320 glmM phosphoglucosami 71.6 12 0.00026 37.4 6.9 44 14-57 43-88 (443)
153 COG1109 {ManB} Phosphomannomut 70.6 14 0.0003 37.2 7.2 58 13-78 45-104 (464)
154 COG3508 HmgA Homogentisate 1,2 70.3 22 0.00048 34.9 8.0 46 232-279 145-190 (427)
155 cd05799 PGM2 This CD includes 70.1 13 0.00028 37.6 6.8 42 14-55 47-91 (487)
156 TIGR02990 ectoine_eutA ectoine 70.1 17 0.00036 33.5 7.0 66 13-84 121-196 (239)
157 TIGR02466 conserved hypothetic 69.6 15 0.00033 33.0 6.5 69 218-286 101-197 (201)
158 PF06719 AraC_N: AraC-type tra 69.4 46 0.00099 28.2 9.2 58 232-296 22-82 (155)
159 cd02069 methionine_synthase_B1 69.1 20 0.00044 32.4 7.2 71 12-87 88-186 (213)
160 COG0521 MoaB Molybdopterin bio 68.5 7.5 0.00016 34.1 4.1 119 13-136 10-154 (169)
161 KOG3706 Uncharacterized conser 67.7 4.8 0.0001 40.8 3.0 57 221-277 325-405 (629)
162 cd03089 PMM_PGM The phosphoman 67.4 18 0.00038 36.1 7.1 43 14-56 38-82 (443)
163 smart00852 MoCF_biosynth Proba 66.8 9 0.00019 31.5 4.2 48 28-81 21-70 (135)
164 PRK09375 quinolinate synthetas 66.5 22 0.00047 34.4 7.2 100 1-118 79-184 (319)
165 PLN02288 mannose-6-phosphate i 66.2 5.6 0.00012 39.5 3.2 30 253-282 251-280 (394)
166 PF00455 DeoRC: DeoR C termina 65.8 16 0.00034 31.4 5.6 82 52-141 9-99 (161)
167 TIGR00177 molyb_syn molybdenum 65.6 10 0.00022 31.9 4.3 47 29-81 31-79 (144)
168 PRK14318 glmM phosphoglucosami 65.2 20 0.00044 35.8 7.1 44 14-57 46-91 (448)
169 PRK14321 glmM phosphoglucosami 65.1 57 0.0012 32.6 10.2 93 14-139 38-132 (449)
170 cd03087 PGM_like1 This archaea 64.9 17 0.00037 36.1 6.5 44 14-57 35-80 (439)
171 PF10941 DUF2620: Protein of u 64.7 80 0.0017 26.1 9.1 60 13-84 1-60 (117)
172 PF00027 cNMP_binding: Cyclic 64.4 16 0.00034 26.6 4.7 64 219-282 3-75 (91)
173 cd05563 PTS_IIB_ascorbate PTS_ 64.2 4 8.7E-05 30.8 1.4 18 72-89 2-20 (86)
174 PRK14317 glmM phosphoglucosami 62.7 23 0.0005 35.6 7.0 43 14-56 57-101 (465)
175 cd05802 GlmM GlmM is a bacteri 61.9 27 0.00059 34.7 7.3 45 14-58 39-85 (434)
176 PRK15186 AraC family transcrip 61.9 21 0.00046 33.8 6.2 45 235-280 40-84 (291)
177 PRK03670 competence damage-ind 61.7 78 0.0017 29.4 9.8 81 29-137 24-106 (252)
178 TIGR02370 pyl_corrinoid methyl 61.7 56 0.0012 28.9 8.5 37 13-50 85-124 (197)
179 cd00578 L-fuc_L-ara-isomerases 61.4 22 0.00047 35.6 6.5 67 15-85 5-80 (452)
180 PRK10887 glmM phosphoglucosami 61.2 27 0.00058 34.9 7.1 44 14-57 41-86 (443)
181 cd05800 PGM_like2 This PGM-lik 60.8 29 0.00063 34.7 7.3 66 14-79 41-115 (461)
182 PRK14322 glmM phosphoglucosami 60.4 23 0.00051 35.1 6.5 42 14-55 39-82 (429)
183 cd05803 PGM_like4 This PGM-lik 60.4 24 0.00053 35.1 6.6 44 14-57 39-84 (445)
184 PF09391 DUF2000: Protein of u 60.3 16 0.00035 30.7 4.5 57 15-78 57-118 (133)
185 PRK00924 5-keto-4-deoxyuronate 59.3 28 0.0006 33.0 6.4 65 218-282 180-254 (276)
186 COG3473 Maleate cis-trans isom 58.3 38 0.00083 31.0 6.7 56 14-75 120-185 (238)
187 PRK14319 glmM phosphoglucosami 58.2 30 0.00065 34.4 6.8 41 14-54 36-78 (430)
188 PRK14323 glmM phosphoglucosami 58.1 32 0.00069 34.3 7.0 44 14-57 44-89 (440)
189 TIGR01455 glmM phosphoglucosam 57.5 33 0.00072 34.2 7.0 44 14-57 40-85 (443)
190 PRK11753 DNA-binding transcrip 57.2 44 0.00096 28.9 7.1 66 217-282 22-97 (211)
191 PF04622 ERG2_Sigma1R: ERG2 an 56.2 48 0.001 30.3 7.2 61 221-281 107-167 (216)
192 cd03088 ManB ManB is a bacteri 55.8 37 0.0008 34.1 7.0 64 14-77 38-108 (459)
193 PF04263 TPK_catalytic: Thiami 55.2 56 0.0012 26.9 6.9 47 28-79 49-95 (123)
194 PRK09542 manB phosphomannomuta 54.7 19 0.0004 36.0 4.7 41 14-54 37-79 (445)
195 COG5012 Predicted cobalamin bi 54.4 11 0.00024 34.5 2.8 37 12-48 104-142 (227)
196 TIGR02082 metH 5-methyltetrahy 52.7 36 0.00079 38.6 6.9 36 12-47 732-769 (1178)
197 PF13399 LytR_C: LytR cell env 52.3 40 0.00087 25.5 5.3 34 14-47 5-38 (90)
198 PF05962 HutD: HutD; InterPro 51.7 22 0.00047 31.4 4.1 45 233-281 135-179 (184)
199 PRK14821 putative deoxyribonuc 50.9 31 0.00067 30.5 5.0 74 13-94 1-81 (184)
200 cd00133 PTS_IIB PTS_IIB: subun 50.6 10 0.00022 27.5 1.6 14 72-85 2-15 (84)
201 TIGR01132 pgm phosphoglucomuta 50.2 57 0.0012 33.6 7.5 43 14-56 79-126 (543)
202 cd03086 PGM3 PGM3 (phosphogluc 49.5 38 0.00081 34.8 6.0 37 11-47 101-139 (513)
203 PRK09391 fixK transcriptional 49.4 79 0.0017 28.2 7.6 67 216-282 39-111 (230)
204 TIGR01162 purE phosphoribosyla 49.4 26 0.00057 30.3 4.2 71 15-98 3-76 (156)
205 PRK05928 hemD uroporphyrinogen 49.2 67 0.0014 28.4 7.0 111 13-133 2-121 (249)
206 PRK14824 putative deoxyribonuc 48.9 36 0.00078 30.6 5.1 75 13-95 1-83 (201)
207 cd05805 MPG1_transferase GTP-m 48.9 55 0.0012 32.5 7.0 44 14-57 36-81 (441)
208 COG3150 Predicted esterase [Ge 48.8 23 0.00051 31.4 3.7 67 26-97 16-87 (191)
209 cd00887 MoeA MoeA family. Memb 48.5 28 0.0006 34.3 4.7 98 29-136 199-309 (394)
210 cd06341 PBP1_ABC_ligand_bindin 47.0 1.8E+02 0.004 26.9 10.0 87 14-106 134-232 (341)
211 COG3414 SgaB Phosphotransferas 47.0 34 0.00073 27.0 4.1 29 12-40 1-32 (93)
212 cd03087 PGM_like1 This archaea 46.7 86 0.0019 31.1 8.0 63 10-78 162-235 (439)
213 cd00885 cinA Competence-damage 46.3 29 0.00062 30.2 4.0 81 28-137 22-104 (170)
214 PTZ00150 phosphoglucomutase-2- 46.1 66 0.0014 33.5 7.3 43 14-56 91-136 (584)
215 PRK08058 DNA polymerase III su 46.0 36 0.00077 32.6 5.0 92 26-141 14-109 (329)
216 PF02879 PGM_PMM_II: Phosphogl 45.9 1.3E+02 0.0029 23.2 7.5 63 11-79 20-94 (104)
217 PRK14822 nucleoside-triphospha 45.9 38 0.00082 30.4 4.8 76 13-96 2-88 (200)
218 COG2185 Sbm Methylmalonyl-CoA 45.8 42 0.00091 28.7 4.8 98 11-129 11-110 (143)
219 COG0041 PurE Phosphoribosylcar 45.6 58 0.0013 28.3 5.6 74 13-98 5-80 (162)
220 PRK09548 PTS system ascorbate- 45.5 30 0.00066 36.2 4.6 34 8-41 502-538 (602)
221 cd04885 ACT_ThrD-I Tandem C-te 44.9 29 0.00064 24.9 3.3 30 14-43 39-68 (68)
222 cd05800 PGM_like2 This PGM-lik 44.9 82 0.0018 31.5 7.6 72 11-88 172-254 (461)
223 PRK03604 moaC bifunctional mol 44.9 29 0.00063 33.4 4.1 63 15-82 160-229 (312)
224 PLN02371 phosphoglucosamine mu 43.6 75 0.0016 33.1 7.2 43 14-56 117-161 (583)
225 COG0303 MoeA Molybdopterin bio 43.5 35 0.00075 34.1 4.5 48 29-82 207-256 (404)
226 PRK13509 transcriptional repre 43.3 83 0.0018 28.9 6.8 79 52-140 83-170 (251)
227 COG2731 EbgC Beta-galactosidas 42.8 28 0.00061 30.1 3.3 27 252-278 111-137 (154)
228 KOG4281 Uncharacterized conser 42.7 25 0.00055 32.1 3.1 40 208-247 69-110 (236)
229 PRK14498 putative molybdopteri 42.5 31 0.00067 36.1 4.3 104 28-137 216-327 (633)
230 PRK08105 flavodoxin; Provision 41.9 84 0.0018 26.5 6.1 58 12-81 3-62 (149)
231 KOG1356 Putative transcription 41.8 8.7 0.00019 41.4 0.0 59 222-280 764-826 (889)
232 cd05565 PTS_IIB_lactose PTS_II 41.6 11 0.00023 30.2 0.5 49 72-121 3-57 (99)
233 PRK00120 dITP/XTP pyrophosphat 41.3 46 0.00099 29.8 4.6 73 13-93 1-83 (196)
234 PRK10202 ebgC cryptic beta-D-g 41.2 69 0.0015 27.3 5.5 22 253-274 106-127 (149)
235 KOG2131 Uncharacterized conser 41.0 30 0.00066 34.1 3.6 60 221-281 206-296 (427)
236 PRK01372 ddl D-alanine--D-alan 40.9 1.1E+02 0.0025 28.2 7.4 61 11-81 3-69 (304)
237 cd03522 MoeA_like MoeA_like. T 40.8 68 0.0015 30.9 5.9 103 28-135 182-293 (312)
238 PF01975 SurE: Survival protei 40.3 30 0.00065 30.9 3.3 33 13-46 1-35 (196)
239 PF01238 PMI_typeI: Phosphoman 40.3 15 0.00033 36.0 1.5 22 254-275 251-272 (373)
240 PRK10402 DNA-binding transcrip 39.4 1.6E+02 0.0034 26.1 7.9 66 219-284 35-109 (226)
241 PF06999 Suc_Fer-like: Sucrase 39.1 59 0.0013 29.2 5.1 59 70-137 132-219 (230)
242 PRK14823 putative deoxyribonuc 38.1 41 0.00088 30.0 3.7 72 13-93 1-83 (191)
243 PRK13918 CRP/FNR family transc 38.1 1.8E+02 0.0039 24.8 7.9 65 218-282 9-83 (202)
244 PLN02699 Bifunctional molybdop 36.9 42 0.0009 35.6 4.2 48 29-81 213-262 (659)
245 PRK10680 molybdopterin biosynt 36.7 43 0.00094 33.4 4.1 99 29-137 208-318 (411)
246 COG2984 ABC-type uncharacteriz 36.5 2.3E+02 0.0051 27.4 8.8 115 14-135 32-156 (322)
247 PRK14314 glmM phosphoglucosami 36.4 1.5E+02 0.0033 29.5 8.0 63 11-79 176-247 (450)
248 PRK14690 molybdopterin biosynt 35.9 46 0.00099 33.3 4.1 89 29-127 224-323 (419)
249 PRK11161 fumarate/nitrate redu 35.8 2.1E+02 0.0046 25.1 8.1 63 219-281 41-111 (235)
250 COG1611 Predicted Rossmann fol 35.4 25 0.00053 31.7 1.9 83 49-140 32-139 (205)
251 PHA02890 hypothetical protein; 35.3 1.6E+02 0.0035 27.7 7.2 39 237-275 96-136 (278)
252 PRK09453 phosphodiesterase; Pr 34.7 63 0.0014 27.7 4.4 33 13-45 1-35 (182)
253 PF13640 2OG-FeII_Oxy_3: 2OG-F 34.6 77 0.0017 24.1 4.4 20 257-276 66-86 (100)
254 cd06348 PBP1_ABC_ligand_bindin 34.5 1.4E+02 0.0031 27.8 7.1 64 13-82 137-205 (344)
255 COG1751 Uncharacterized conser 34.5 33 0.00071 29.9 2.4 31 13-43 52-88 (186)
256 PRK14491 putative bifunctional 34.0 49 0.0011 34.7 4.1 103 29-137 398-508 (597)
257 cd07995 TPK Thiamine pyrophosp 33.9 1.9E+02 0.0041 25.6 7.4 60 15-79 24-101 (208)
258 TIGR00678 holB DNA polymerase 33.9 1E+02 0.0022 26.4 5.6 35 107-141 61-95 (188)
259 PRK03708 ppnK inorganic polyph 33.8 3.2E+02 0.0069 25.7 9.2 103 13-140 1-115 (277)
260 PF02401 LYTB: LytB protein; 33.5 2.8E+02 0.0062 26.2 8.8 114 14-136 65-179 (281)
261 PRK05467 Fe(II)-dependent oxyg 33.4 1.1E+02 0.0023 28.2 5.7 38 252-289 140-179 (226)
262 PF04914 DltD_C: DltD C-termin 33.4 35 0.00076 28.6 2.4 32 19-50 64-101 (130)
263 PRK09490 metH B12-dependent me 33.4 98 0.0021 35.4 6.5 35 13-47 752-788 (1229)
264 PRK07564 phosphoglucomutase; V 33.0 1.3E+02 0.0028 31.0 7.0 43 14-56 78-125 (543)
265 PRK09802 DNA-binding transcrip 32.7 1.7E+02 0.0036 27.3 7.1 80 52-140 96-185 (269)
266 PRK14497 putative molybdopteri 32.5 55 0.0012 34.0 4.1 97 29-135 210-318 (546)
267 cd06338 PBP1_ABC_ligand_bindin 32.3 1.6E+02 0.0035 27.3 7.0 62 14-81 143-208 (345)
268 PF13177 DNA_pol3_delta2: DNA 32.3 72 0.0016 27.1 4.3 41 101-141 57-101 (162)
269 PRK13372 pcmA protocatechuate 32.2 54 0.0012 33.1 3.9 18 25-42 246-263 (444)
270 cd01829 SGNH_hydrolase_peri2 S 32.1 1.7E+02 0.0038 24.8 6.8 62 14-79 1-70 (200)
271 PF02310 B12-binding: B12 bind 32.0 2.4E+02 0.0053 21.9 7.9 32 28-62 18-49 (121)
272 cd03085 PGM1 Phosphoglucomutas 31.2 1.5E+02 0.0033 30.6 7.2 43 14-56 51-98 (548)
273 KOG1116 Sphingosine kinase, in 31.2 88 0.0019 32.7 5.2 106 15-121 183-332 (579)
274 COG0163 UbiX 3-polyprenyl-4-hy 30.7 80 0.0017 28.3 4.3 33 12-44 2-35 (191)
275 cd00038 CAP_ED effector domain 30.5 2.2E+02 0.0047 20.8 7.4 48 218-265 20-71 (115)
276 cd05565 PTS_IIB_lactose PTS_II 30.4 70 0.0015 25.4 3.6 29 13-42 1-32 (99)
277 PRK14324 glmM phosphoglucosami 30.4 1.7E+02 0.0037 29.2 7.2 32 11-44 174-205 (446)
278 COG1109 {ManB} Phosphomannomut 30.2 2.2E+02 0.0048 28.6 8.0 104 9-115 175-307 (464)
279 smart00100 cNMP Cyclic nucleot 30.2 1.7E+02 0.0037 21.4 5.8 48 218-265 20-71 (120)
280 PRK14323 glmM phosphoglucosami 30.0 2.2E+02 0.0048 28.3 7.9 63 11-79 172-243 (440)
281 PRK07276 DNA polymerase III su 29.8 93 0.002 29.6 4.9 36 107-142 69-104 (290)
282 COG1252 Ndh NADH dehydrogenase 29.7 2E+02 0.0044 28.7 7.4 121 13-137 5-184 (405)
283 cd06366 PBP1_GABAb_receptor Li 29.4 1.8E+02 0.004 27.1 6.9 61 14-80 137-203 (350)
284 PRK01018 50S ribosomal protein 29.1 1.1E+02 0.0024 24.1 4.5 30 14-44 35-64 (99)
285 cd05805 MPG1_transferase GTP-m 29.1 2.1E+02 0.0046 28.4 7.6 67 11-79 167-249 (441)
286 PRK05723 flavodoxin; Provision 28.8 1.8E+02 0.004 24.6 6.2 57 13-81 3-61 (151)
287 cd06352 PBP1_NPR_GC_like Ligan 28.5 1.7E+02 0.0038 27.7 6.7 61 13-80 138-205 (389)
288 TIGR02706 P_butyryltrans phosp 28.4 1.2E+02 0.0027 28.6 5.5 39 49-93 72-113 (294)
289 PRK14317 glmM phosphoglucosami 28.3 2.4E+02 0.0053 28.2 7.9 63 11-79 187-258 (465)
290 cd00006 PTS_IIA_man PTS_IIA, P 28.3 1.4E+02 0.003 24.0 5.1 48 14-62 2-53 (122)
291 PRK01215 competence damage-ind 28.1 90 0.002 29.2 4.5 80 28-136 26-107 (264)
292 COG0062 Uncharacterized conser 28.1 59 0.0013 29.4 3.1 30 51-80 31-60 (203)
293 KOG2130 Phosphatidylserine-spe 27.8 74 0.0016 30.9 3.8 28 254-281 264-291 (407)
294 PRK09392 ftrB transcriptional 27.5 3.1E+02 0.0066 24.2 7.7 67 218-284 33-107 (236)
295 PLN02895 phosphoacetylglucosam 27.5 1.4E+02 0.0031 31.1 6.1 37 11-47 126-164 (562)
296 PRK07239 bifunctional uroporph 27.4 5.7E+02 0.012 24.7 10.6 118 1-131 1-136 (381)
297 COG1741 Pirin-related protein 27.3 5.4E+02 0.012 24.3 9.7 31 216-246 176-206 (276)
298 KOG3859 Septins (P-loop GTPase 27.3 71 0.0015 30.8 3.5 38 112-153 43-80 (406)
299 PRK05627 bifunctional riboflav 27.2 1.7E+02 0.0038 27.9 6.3 87 12-98 115-227 (305)
300 cd05803 PGM_like4 This PGM-lik 26.9 2.6E+02 0.0057 27.7 7.8 71 11-87 172-252 (445)
301 PLN02307 phosphoglucomutase 26.9 2.4E+02 0.0052 29.5 7.7 44 14-57 63-111 (579)
302 cd03084 phosphohexomutase The 26.8 2.8E+02 0.0062 26.5 7.8 69 11-85 111-191 (355)
303 cd06358 PBP1_NHase Type I peri 26.8 2.3E+02 0.0049 26.3 7.0 65 13-83 133-201 (333)
304 cd04906 ACT_ThrD-I_1 First of 26.6 1.4E+02 0.0029 22.5 4.5 34 14-47 41-75 (85)
305 PRK12354 carbamate kinase; Rev 26.6 4.4E+02 0.0095 25.3 8.9 117 26-162 128-274 (307)
306 PF05818 TraT: Enterobacterial 26.4 52 0.0011 30.0 2.4 27 18-45 31-57 (215)
307 COG0745 OmpR Response regulato 26.4 2.5E+02 0.0054 25.5 6.9 99 13-140 1-104 (229)
308 TIGR00768 rimK_fam alpha-L-glu 25.8 84 0.0018 28.3 3.8 32 14-46 1-32 (277)
309 PRK05564 DNA polymerase III su 25.8 76 0.0016 29.9 3.6 34 108-141 58-92 (313)
310 PRK08811 uroporphyrinogen-III 25.7 4.8E+02 0.01 24.1 8.8 113 13-136 139-261 (266)
311 cd06336 PBP1_ABC_ligand_bindin 25.6 2.2E+02 0.0048 26.7 6.7 61 14-80 140-204 (347)
312 PRK07993 DNA polymerase III su 25.3 1.8E+02 0.0039 28.0 6.1 85 54-143 12-109 (334)
313 PHA02984 hypothetical protein; 25.2 2.9E+02 0.0063 26.2 7.1 41 236-276 96-138 (286)
314 PRK09004 FMN-binding protein M 25.2 2.3E+02 0.005 23.7 6.1 56 12-81 3-60 (146)
315 cd08183 Fe-ADH2 Iron-containin 25.2 2.8E+02 0.006 26.9 7.5 60 14-79 24-85 (374)
316 PLN02714 thiamin pyrophosphoki 25.2 3.2E+02 0.0068 24.9 7.4 34 28-61 67-101 (229)
317 PLN02868 acyl-CoA thioesterase 25.1 1.9E+02 0.0042 28.4 6.4 47 219-265 35-84 (413)
318 cd04907 ACT_ThrD-I_2 Second of 25.1 1.3E+02 0.0027 22.8 4.0 33 14-47 42-74 (81)
319 PF12850 Metallophos_2: Calcin 24.9 1.1E+02 0.0024 24.7 4.1 32 13-45 1-33 (156)
320 PLN02591 tryptophan synthase 24.6 5.5E+02 0.012 23.8 8.9 92 24-133 117-210 (250)
321 PRK10681 DNA-binding transcrip 24.6 2.6E+02 0.0056 25.6 6.8 74 52-134 82-164 (252)
322 KOG2653 6-phosphogluconate deh 24.3 88 0.0019 31.1 3.6 45 26-80 87-131 (487)
323 cd08179 NADPH_BDH NADPH-depend 24.2 2.8E+02 0.0062 26.9 7.3 62 14-80 25-92 (375)
324 PF10100 DUF2338: Uncharacteri 24.1 97 0.0021 31.1 4.0 35 12-46 167-201 (429)
325 KOG1417 Homogentisate 1,2-diox 23.6 4.2E+02 0.0091 25.7 7.9 56 228-285 149-205 (446)
326 TIGR01931 cysJ sulfite reducta 23.6 2.8E+02 0.0062 28.9 7.6 75 11-97 59-148 (597)
327 PRK10953 cysJ sulfite reductas 23.5 3E+02 0.0065 28.9 7.7 75 11-97 62-151 (600)
328 PRK07742 phosphate butyryltran 23.4 1.6E+02 0.0035 27.9 5.3 36 52-93 78-116 (299)
329 PRK15414 phosphomannomutase Cp 23.4 3.3E+02 0.0071 27.3 7.8 35 11-45 169-206 (456)
330 PRK04885 ppnK inorganic polyph 23.3 6.1E+02 0.013 23.6 9.4 84 13-140 1-96 (265)
331 PRK10887 glmM phosphoglucosami 22.9 3.6E+02 0.0079 26.8 7.9 67 11-79 170-251 (443)
332 TIGR01455 glmM phosphoglucosam 22.9 3.7E+02 0.0081 26.7 8.0 104 11-117 171-303 (443)
333 PRK01424 S-adenosylmethionine: 22.8 77 0.0017 31.2 3.0 62 15-79 196-278 (366)
334 PF13271 DUF4062: Domain of un 22.5 3.4E+02 0.0073 20.3 6.3 64 14-82 1-66 (83)
335 PRK14321 glmM phosphoglucosami 22.5 3.6E+02 0.0078 26.9 7.8 67 11-79 164-246 (449)
336 COG2910 Putative NADH-flavin r 22.4 92 0.002 28.2 3.1 29 13-45 1-31 (211)
337 TIGR01378 thi_PPkinase thiamin 22.4 4E+02 0.0087 23.6 7.4 60 15-79 20-97 (203)
338 PRK14316 glmM phosphoglucosami 22.3 3.8E+02 0.0082 26.6 8.0 67 11-79 172-253 (448)
339 PF08357 SEFIR: SEFIR domain; 22.3 4.4E+02 0.0094 21.5 7.3 61 14-80 2-70 (150)
340 PRK14315 glmM phosphoglucosami 22.3 4E+02 0.0087 26.5 8.1 103 11-116 175-306 (448)
341 cd02106 Band_7 The band 7 doma 22.3 1.2E+02 0.0027 23.0 3.6 27 25-51 83-111 (121)
342 PLN02871 UDP-sulfoquinovose:DA 22.3 1.3E+02 0.0028 29.8 4.6 37 10-46 56-99 (465)
343 PLN02699 Bifunctional molybdop 22.3 1.3E+02 0.0028 32.1 4.7 58 20-81 477-537 (659)
344 COG0622 Predicted phosphoester 22.2 5E+02 0.011 22.6 7.8 100 12-119 1-117 (172)
345 PRK12483 threonine dehydratase 22.2 1.9E+02 0.0042 29.8 5.9 64 69-133 84-154 (521)
346 PRK06871 DNA polymerase III su 22.2 2.1E+02 0.0046 27.6 5.9 48 93-141 58-106 (325)
347 PRK00726 murG undecaprenyldiph 22.2 1.4E+02 0.003 28.0 4.6 35 12-46 1-37 (357)
348 PTZ00302 N-acetylglucosamine-p 22.1 1.9E+02 0.004 30.4 5.8 36 12-47 152-190 (585)
349 PLN02948 phosphoribosylaminoim 22.0 1.4E+02 0.0031 31.0 5.0 72 14-97 414-487 (577)
350 PRK10446 ribosomal protein S6 21.9 1.2E+02 0.0026 28.3 4.1 34 13-47 1-35 (300)
351 COG1349 GlpR Transcriptional r 21.8 2E+02 0.0043 26.5 5.5 74 52-134 81-163 (253)
352 cd06388 PBP1_iGluR_AMPA_GluR4 21.7 7.3E+02 0.016 23.9 11.2 125 13-146 125-263 (371)
353 cd06350 PBP1_GPCR_family_C_lik 21.7 2.9E+02 0.0064 25.5 6.7 60 14-79 162-227 (348)
354 PRK13609 diacylglycerol glucos 21.6 1.4E+02 0.0029 28.5 4.5 32 11-42 3-37 (380)
355 cd05802 GlmM GlmM is a bacteri 21.4 4.2E+02 0.0091 26.2 8.0 67 11-79 168-249 (434)
356 PRK10434 srlR DNA-bindng trans 21.3 2.2E+02 0.0049 26.1 5.7 74 52-134 81-164 (256)
357 PF13458 Peripla_BP_6: Peripla 21.3 3.8E+02 0.0083 24.5 7.4 63 14-83 137-204 (343)
358 PRK10906 DNA-binding transcrip 21.3 3.3E+02 0.0071 25.0 6.8 62 52-121 81-144 (252)
359 PRK09542 manB phosphomannomuta 21.2 3.8E+02 0.0082 26.7 7.7 32 11-44 163-194 (445)
360 PRK14825 putative deoxyribonuc 21.1 2.4E+02 0.0051 25.3 5.6 76 14-96 3-86 (199)
361 cd06355 PBP1_FmdD_like Peripla 21.0 3.7E+02 0.0079 25.3 7.3 65 12-82 133-201 (348)
362 PRK10411 DNA-binding transcrip 20.9 3.6E+02 0.0078 24.6 6.9 74 52-134 83-164 (240)
363 PF01747 ATP-sulfurylase: ATP- 20.9 1.3E+02 0.0027 27.4 3.8 36 14-49 118-160 (215)
364 PRK02491 putative deoxyribonuc 20.9 1.6E+02 0.0034 28.7 4.6 78 11-96 126-214 (328)
365 PRK09774 fec operon regulator 20.7 3.9E+02 0.0085 25.4 7.4 31 216-246 155-186 (319)
366 TIGR03407 urea_ABC_UrtA urea A 20.7 3.4E+02 0.0073 25.7 7.0 63 13-81 135-201 (359)
367 PF07530 PRE_C2HC: Associated 20.6 83 0.0018 23.2 2.1 17 28-44 2-18 (68)
368 PF13480 Acetyltransf_6: Acety 20.6 1.3E+02 0.0028 23.6 3.5 26 23-48 112-137 (142)
369 cd08171 GlyDH-like2 Glycerol d 20.5 3.5E+02 0.0075 25.9 7.0 61 13-77 23-87 (345)
370 PF04074 DUF386: Domain of unk 20.5 1.2E+02 0.0027 25.5 3.5 24 254-277 114-137 (153)
371 cd03089 PMM_PGM The phosphoman 20.4 3.9E+02 0.0084 26.5 7.6 34 11-46 162-195 (443)
372 PRK14318 glmM phosphoglucosami 20.3 4.6E+02 0.0099 26.1 8.1 63 11-79 174-245 (448)
373 COG3128 PiuC Uncharacterized i 20.2 2E+02 0.0044 26.0 4.8 38 251-288 142-181 (229)
374 COG0664 Crp cAMP-binding prote 20.2 2.7E+02 0.0058 23.3 5.7 65 218-282 26-99 (214)
375 PRK13602 putative ribosomal pr 20.1 2.1E+02 0.0045 21.8 4.3 32 14-46 30-61 (82)
376 cd03088 ManB ManB is a bacteri 20.1 4.1E+02 0.009 26.5 7.7 69 11-85 164-242 (459)
No 1
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=100.00 E-value=1.3e-56 Score=377.52 Aligned_cols=136 Identities=24% Similarity=0.342 Sum_probs=128.7
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecC---CCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCC
Q 021654 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGT---SDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKN 89 (309)
Q Consensus 13 mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~---~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~ 89 (309)
|||+|||||+||+||+.|++||+++||||+|+|+ .||||+|.+||+.|.+ ++++|||||||||+||||+|||+
T Consensus 1 MkI~IgsDh~G~~lK~~i~~~L~~~G~eV~D~G~~~~~dYpd~a~~va~~V~~----~e~~~GIliCGtGiG~siaANK~ 76 (141)
T TIGR01118 1 MAIIIGSDLAGKRLKDVIKNFLVDNGFEVIDVTEGDGQDFVDVTLAVASEVQK----DEQNLGIVIDAYGAGSFMVATKI 76 (141)
T ss_pred CEEEEEeCcchHHHHHHHHHHHHHCCCEEEEcCCCCCCCcHHHHHHHHHHHHc----CCCceEEEEcCCCHhHhhhhhcC
Confidence 8999999999999999999999999999999998 3799999999999998 99999999999999999999999
Q ss_pred CceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhh
Q 021654 90 PGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENIS 156 (309)
Q Consensus 90 ~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~ 156 (309)
||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++| +++++.+.|.
T Consensus 77 ~GIRAA~~~d~~~A~~ar~hNnaNVL~lG~r~~g~~~a~~iv~~fL~t~f~gg----rh~~Rv~~i~ 139 (141)
T TIGR01118 77 KGMIAAEVSDERSAYMTRGHNNARMITVGAEIVGDELAKNIVKAFVEGKYDGG----RHQIRVDMLN 139 (141)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCcEEEECccccCHHHHHHHHHHHHcCCCCCc----cHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999963 5555555444
No 2
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=100.00 E-value=2.2e-56 Score=376.57 Aligned_cols=136 Identities=22% Similarity=0.317 Sum_probs=129.0
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC---CCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCC
Q 021654 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS---DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKN 89 (309)
Q Consensus 13 mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~---~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~ 89 (309)
|||+|||||+||+||+.|++||+++||||+|+|++ |||++|.+||++|.+ +++++||||||||+||||+||||
T Consensus 1 mkI~igsDhaG~~lK~~l~~~L~~~G~eV~D~G~~~~~dYpd~a~~va~~V~~----~~~~~GIliCGTGiG~siaANK~ 76 (142)
T PRK08621 1 MAIIIGADKAGFELKEVVKDYLEDNKYEVVDVTEEGAEDFVDSTLAVAKEVNK----SEDNLGIVIDAYGAGSFMVATKI 76 (142)
T ss_pred CEEEEEeCcchHHHHHHHHHHHHHCCCEEEECCCCCCCCcHHHHHHHHHHHHc----CCCceEEEEcCCChhhhhhhhcC
Confidence 89999999999999999999999999999999983 699999999999998 99999999999999999999999
Q ss_pred CceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhh
Q 021654 90 PGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENIS 156 (309)
Q Consensus 90 ~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~ 156 (309)
||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++ +++.++.+.|.
T Consensus 77 ~GIRAA~~~d~~~A~~ar~hNnaNVL~lG~r~ig~~~a~~iv~~fL~t~f~g----grh~~Rv~ki~ 139 (142)
T PRK08621 77 KGMVAAEVSDERSAYMTRGHNNARMITMGSEIVGDGLAKNIIKGFVEGKYDG----GRHQIRVDMLN 139 (142)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCcEEEECccccCHHHHHHHHHHHHcCCCCC----ccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999996 45665555554
No 3
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=100.00 E-value=2.4e-56 Score=375.91 Aligned_cols=136 Identities=23% Similarity=0.324 Sum_probs=128.7
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC--CCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCCC
Q 021654 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS--DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKNP 90 (309)
Q Consensus 13 mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~--~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~~ 90 (309)
|||+|||||+||+||+.|++||+++||||+|+|+. ||||+|.+||++|.+ ++++|||+|||||+||||+|||+|
T Consensus 1 MkI~igsDhaG~~lK~~l~~~L~~~g~eV~D~G~~~~dypd~a~~va~~V~~----~e~~~GIliCGtGiG~siaANKv~ 76 (141)
T PRK12613 1 MAIILGADAHGNALKELIKSFLQEEGYDIIDVTDINSDFIDNTLAVAKAVNE----AEGRLGIMVDAYGAGPFMVATKLK 76 (141)
T ss_pred CEEEEEeCcchHHHHHHHHHHHHHCCCEEEEcCCCCCChHHHHHHHHHHHHc----CCCceEEEEcCCCHhHhhhhhcCC
Confidence 89999999999999999999999999999999984 799999999999998 999999999999999999999999
Q ss_pred ceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhh
Q 021654 91 GVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENIS 156 (309)
Q Consensus 91 giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~ 156 (309)
|||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++| +++++.+.|.
T Consensus 77 GIRaA~~~d~~~A~~ar~hNnaNVl~lG~r~ig~~~a~~iv~~fL~t~f~gg----rh~~Rv~~i~ 138 (141)
T PRK12613 77 GMVAAEVSDERSAYMTRGHNNARMITMGAEIVGPELAKNIAKGFVTGPYDGG----RHQIRVDMLN 138 (141)
T ss_pred CeEEEEECCHHHHHHHHHHcCCcEEEECccccCHHHHHHHHHHHHcCCCCCc----cHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999974 5555555444
No 4
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=100.00 E-value=8.1e-56 Score=376.33 Aligned_cols=139 Identities=35% Similarity=0.550 Sum_probs=130.9
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecC---C---CCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhh
Q 021654 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGT---S---DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFA 86 (309)
Q Consensus 13 mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~---~---~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaa 86 (309)
|||+|||||+||+||+.|++||+++||||+|+|+ . +||++|.+||++|.+ |+++|||||||||+||||+|
T Consensus 1 mkI~igsDhaG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~----g~~~~GIliCGtGiG~siaA 76 (148)
T PRK05571 1 MKIAIGSDHAGFELKEEIIEHLEELGHEVIDLGPDSYDASVDYPDYAKKVAEAVVA----GEADRGILICGTGIGMSIAA 76 (148)
T ss_pred CEEEEEeCCchHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHc----CCCCEEEEEcCCcHHHHHHH
Confidence 8999999999999999999999999999999998 2 699999999999998 99999999999999999999
Q ss_pred cCCCceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhhhhh
Q 021654 87 NKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCFF 159 (309)
Q Consensus 87 NK~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~~fl 159 (309)
|||||||||+|+|+++|+|+|+|||+||||||+|++|+++|++|+++||+|+|++ ++++++.+.|..+.
T Consensus 77 NK~~GIRAA~~~d~~~A~~ar~hNnaNVL~lG~r~ig~~~a~~iv~~fl~t~F~g----grh~~Rv~ki~~~e 145 (148)
T PRK05571 77 NKVKGIRAALCHDTYSAHLAREHNNANVLALGARVIGPELAKDIVDAFLATEFEG----GRHQRRIDKIDEYE 145 (148)
T ss_pred hcCCCeEEEEECCHHHHHHHHHhcCCcEEEECccccCHHHHHHHHHHHHcCCCCC----CcHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999996 46666666666543
No 5
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=100.00 E-value=1.6e-55 Score=380.74 Aligned_cols=143 Identities=29% Similarity=0.425 Sum_probs=134.2
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhc
Q 021654 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFAN 87 (309)
Q Consensus 13 mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaN 87 (309)
|||+|||||+||+||+.|++||+++||||+|+|++ |||++|.+||++|.+ ++++|||||||||+||||+||
T Consensus 1 MkI~IgsDhaG~~lK~~l~~~L~~~G~eV~D~G~~~~e~~dYpd~a~~va~~V~~----g~~d~GIliCGTGiG~siaAN 76 (171)
T PRK08622 1 MKIAIGCDHIVTDEKMAVSDYLKSKGHEVIDVGTYDFTRTHYPIFGKKVGEAVAS----GEADLGVCICGTGVGISNAVN 76 (171)
T ss_pred CEEEEEeCcchHHHHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHc----CCCcEEEEEcCCcHHHHHHHh
Confidence 89999999999999999999999999999999984 699999999999998 999999999999999999999
Q ss_pred CCCceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhhhhhhhc
Q 021654 88 KNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCFFDKS 162 (309)
Q Consensus 88 K~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~~fl~~s 162 (309)
||||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++ .+++.++++.|..+.+..
T Consensus 77 Kv~GIRAA~~~d~~sA~~aR~hNnaNVL~lG~r~ig~~~a~~iv~~fL~t~F~g---ggrh~~Rv~ki~~~e~~~ 148 (171)
T PRK08622 77 KVPGIRSALVRDMTSALYAKEELNANVIGFGGKITGELLMCDIIDAFINAEYKP---TEENKKLIEKIDHLEKPN 148 (171)
T ss_pred cCCCeEEEEeCCHHHHHHHHHhcCCcEEEEChhhcCHHHHHHHHHHHHcCCCCC---CChHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999995 357777777777655433
No 6
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=100.00 E-value=2.4e-55 Score=380.07 Aligned_cols=144 Identities=29% Similarity=0.422 Sum_probs=134.7
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhc
Q 021654 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFAN 87 (309)
Q Consensus 13 mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaN 87 (309)
|||+|||||+||+||+.|++||+++||||+|+|++ |||++|.+||++|.+ ++++|||||||||+||||+||
T Consensus 1 MkI~igsDhaG~~lK~~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~----g~~~~GIliCGTGiG~siaAN 76 (171)
T TIGR01119 1 MKIAIGCDHIVTDVKMEVSEFLKSKGYEVLDVGTYDFTRTHYPIFGKKVGEAVVS----GEADLGVCICGTGVGINNAVN 76 (171)
T ss_pred CEEEEEeCCchHHHHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHc----CCCCEEEEEcCCcHHHHHHHh
Confidence 89999999999999999999999999999999984 599999999999998 999999999999999999999
Q ss_pred CCCceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhhhhhhhcc
Q 021654 88 KNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCFFDKSM 163 (309)
Q Consensus 88 K~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~~fl~~sl 163 (309)
||||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++ .+++.+++..|..+.....
T Consensus 77 Kv~GIRAAl~~d~~sA~~ar~hNnaNVL~lGarvig~e~a~~Iv~~fL~t~Feg---ggrh~~Rv~ki~~~e~~~~ 149 (171)
T TIGR01119 77 KVPGVRSALVRDMTSALYAKEELNANVIGFGGAIIGKLLMFDIIDAFIKAEYKP---TEENKKLIAKIKHLETHNA 149 (171)
T ss_pred cCCCeEEEEeCCHHHHHHHHHhcCCcEEEECccccCHHHHHHHHHHHHcCCCCC---CCcHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999995 3577777777776654333
No 7
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=100.00 E-value=3e-55 Score=373.73 Aligned_cols=141 Identities=33% Similarity=0.539 Sum_probs=132.6
Q ss_pred CCcEEEEEeCcccHHHHHHHHHHHHh--CCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhh
Q 021654 11 HPLKIIAGADSFGAELKDALVSHLRS--LNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVA 83 (309)
Q Consensus 11 ~~mki~i~~D~~g~~lk~~l~~~l~~--~g~ev~d~G~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~ 83 (309)
+.|||+|||||+||+||+.|++||++ +||||+|+|++ |||++|.+||++|.+ ++++|||+|||||+||+
T Consensus 1 ~~mkI~igsDhaG~~lK~~l~~~L~~~~~g~eV~D~G~~~~~~~dYp~~a~~va~~V~~----~~~~~GIliCGtGiG~s 76 (151)
T PTZ00215 1 MQKKVAIGSDHAGFDLKNEIIDYIKNKGKEYKIEDMGTYTAESVDYPDFAEKVCEEVLK----GEADTGILVCGSGIGIS 76 (151)
T ss_pred CCcEEEEEeCCchHHHHHHHHHHHHhccCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhc----CCCcEEEEEcCCcHHHH
Confidence 46899999999999999999999999 99999999984 599999999999998 99999999999999999
Q ss_pred hhhcCCCceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhhhhh
Q 021654 84 IFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCFF 159 (309)
Q Consensus 84 iaaNK~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~~fl 159 (309)
|+||||||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++ +++.++.+.|..+.
T Consensus 77 iaANK~~GIRAa~~~d~~~A~~ar~hNnaNVL~lGar~ig~~~a~~iv~~fL~t~F~g----grh~~Rv~~i~~~e 148 (151)
T PTZ00215 77 IAANKVKGIRCALCHDHYTARMSRQHNNANVLAFGGRTTGIEVAKEIIDTFLSTPFEG----GRHTERIDKISAIE 148 (151)
T ss_pred HHHhcCCCeEEEEECCHHHHHHHHHhcCCcEEEECccccCHHHHHHHHHHHHcCCCCC----ccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999996 46666666666554
No 8
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=100.00 E-value=1.5e-55 Score=372.63 Aligned_cols=128 Identities=34% Similarity=0.490 Sum_probs=123.8
Q ss_pred EEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcC
Q 021654 14 KIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANK 88 (309)
Q Consensus 14 ki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK 88 (309)
||+|||||+||+||+.|++||+++||||+|+|++ |||++|.+||++|.+ ++++|||||||||+||||+|||
T Consensus 1 kI~igsDhaG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V~~----~~~~~GIliCGtGiG~siaANK 76 (143)
T TIGR01120 1 KIAIGSDHAGFILKEEIKAFLVERGVKVIDKGTWSSERTDYPHYAKQVALAVAG----GEVDGGILICGTGIGMSIAANK 76 (143)
T ss_pred CEEEEeCcchHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHC----CCCceEEEEcCCcHHHHHHHhc
Confidence 6999999999999999999999999999999984 699999999999998 9999999999999999999999
Q ss_pred CCceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCC
Q 021654 89 NPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPA 145 (309)
Q Consensus 89 ~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~ 145 (309)
+||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++||++
T Consensus 77 ~~GIraa~~~d~~~A~~ar~hNnaNvl~lG~r~~g~~~a~~iv~~fl~t~f~ggrh~ 133 (143)
T TIGR01120 77 FAGIRAALCSEPYMAQMSRLHNDANVLCLGERVVGLELAKSIVDAWLGTQFEGGRHQ 133 (143)
T ss_pred CCCeEEEEECCHHHHHHHHHhcCCcEEEECcceeCHHHHHHHHHHHHcCCCCCCccH
Confidence 999999999999999999999999999999999999999999999999999975544
No 9
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=100.00 E-value=5.1e-55 Score=377.97 Aligned_cols=140 Identities=30% Similarity=0.418 Sum_probs=132.6
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhc
Q 021654 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFAN 87 (309)
Q Consensus 13 mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaN 87 (309)
|||+|||||+||+||+.|++||+++||||+|+|++ |||++|.+||++|.+ ++++|||||||||+||||+||
T Consensus 1 MkI~igsDhaG~~lK~~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~----g~~d~GIliCGTGiG~siaAN 76 (171)
T PRK12615 1 MKIAIGCDHIVTNEKMAVSDFLKSKGYDVIDCGTYDHTRTHYPIFGKKVGEAVVN----GQADLGVCICGTGVGINNAVN 76 (171)
T ss_pred CEEEEEeCchhHHHHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHc----CCCCEEEEEcCCcHHHHHHHh
Confidence 89999999999999999999999999999999985 699999999999998 999999999999999999999
Q ss_pred CCCceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhhhhh
Q 021654 88 KNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCFF 159 (309)
Q Consensus 88 K~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~~fl 159 (309)
||||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++ .+++.++++.|..+.
T Consensus 77 K~~GIRAA~~~d~~~A~~ar~hNnaNVL~lG~r~ig~~~a~~Iv~~fL~t~F~g---ggrh~~Rv~ki~~~e 145 (171)
T PRK12615 77 KVPGIRSALVRDMTTALYAKEELNANVIGFGGKITGELLMCDIIDAFIKAEYKE---TEENKKLIAKIAHLE 145 (171)
T ss_pred cCCCeEEEEeCCHHHHHHHHHhcCCcEEEEChhhcCHHHHHHHHHHHHcCCCCC---CCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999995 257777777777654
No 10
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=100.00 E-value=2.1e-54 Score=368.13 Aligned_cols=139 Identities=30% Similarity=0.355 Sum_probs=130.7
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC------CCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhh
Q 021654 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS------DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFA 86 (309)
Q Consensus 13 mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~------~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaa 86 (309)
|||+|||||+||+||+.|++||+++||+|+|+|++ +||++|.+||++|.+ +++++||||||||+||||+|
T Consensus 1 MkI~igsDhaG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~----~~~~~GIliCGtGiG~siaA 76 (148)
T TIGR02133 1 MRVVLGHDHAGFEYKEALWLDLAAHEPEVCDVGVYDADDDDDYPCFCIAAAEAVAR----DAADLGIVIGGSGNGEAIAA 76 (148)
T ss_pred CEEEEEeCchhHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCchHHHHHHHHHHhc----CCCceEEEEcCCChhheeee
Confidence 89999999999999999999999999999999982 599999999999998 99999999999999999999
Q ss_pred cCCCceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhhhh
Q 021654 87 NKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCF 158 (309)
Q Consensus 87 NK~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~~f 158 (309)
||+||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++ .+++.++.+.|..+
T Consensus 77 NK~~GiRAA~~~d~~sA~~ar~hNnaNVl~lG~r~ig~~~a~~iv~~fl~t~f~~---ggrh~~Rv~~i~~~ 145 (148)
T TIGR02133 77 NKVKGARAALAWDTASAGRARLHNNANVVGAGMRMHGLEEAFRLVFEFLGFEFDA---RSRHARRIDSISEY 145 (148)
T ss_pred cccCCeEEEEECCHHHHHHHHHHcCCcEEEECCcccCHHHHHHHHHHHHCCCCCC---CCchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999995 25666666666554
No 11
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-54 Score=367.57 Aligned_cols=140 Identities=34% Similarity=0.525 Sum_probs=130.2
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC------CCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhh
Q 021654 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS------DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFA 86 (309)
Q Consensus 13 mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~------~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaa 86 (309)
|||+|||||+|++||+.|++||+++||+|+|+|++ +||+|+.+||+.|.+ ++.||||+|||||+||||+|
T Consensus 1 MkIaig~Dhag~~lK~~I~~~Lk~~g~~v~D~G~~~~~~~~dyp~~a~~va~~v~~----~~~d~GIliCGTGiG~~iaA 76 (151)
T COG0698 1 MKIAIGSDHAGYELKEIIIDHLKSKGYEVIDFGTYTDEGSVDYPDYAKKVAEAVLN----GEADLGILICGTGIGMSIAA 76 (151)
T ss_pred CcEEEEcCcccHHHHHHHHHHHHHCCCEEEeccccCCCCCcchHHHHHHHHHHHHc----CCCCeeEEEecCChhHHHHh
Confidence 89999999999999999999999999999999985 599999999999998 89999999999999999999
Q ss_pred cCCCceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCC-CCCCCCCCCChhhhhhhhhhh
Q 021654 87 NKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPF-KAPCPASGFKPWEENISCFFD 160 (309)
Q Consensus 87 NK~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f-~~~~p~~~~~~~~~~I~~fl~ 160 (309)
||+||||||+|+|+++|+|+|+|||+||||||+|++|+++|+.|+|+||+++| ++|||+.+ .+-|.++.+
T Consensus 77 NKv~GiraAl~~D~~sA~~ar~hNnaNvl~~G~riig~~lA~~ivd~fl~~~f~~ggrh~~R----v~~i~~~~~ 147 (151)
T COG0698 77 NKVPGIRAALVSDPTSAKLAREHNNANVLCLGARIIGPELAEDIVDAFLETEFKEGGRHQRR----VDKIAEYER 147 (151)
T ss_pred hccCCeEEEEecCHHHHHHHHhcCCCcEEEechhhccHHHHHHHHHHHHhccccCCCchHHH----HHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 77766654 444444443
No 12
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=100.00 E-value=2.1e-54 Score=366.06 Aligned_cols=136 Identities=32% Similarity=0.503 Sum_probs=128.1
Q ss_pred EEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCC
Q 021654 15 IIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKN 89 (309)
Q Consensus 15 i~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~ 89 (309)
|+|||||+||+||+.|++||+++||||+|+|++ +||++|.+||++|.+ |+++|||+|||||+||||+||||
T Consensus 1 I~igsDhaG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V~~----g~~~~GIliCGtGiG~siaANK~ 76 (144)
T TIGR00689 1 IAIGSDHAGLELKSEIIEHLKQKGHEVIDCGTLYDERVDYPDYAKLVADKVVA----GEVSLGILICGTGIGMSIAANKF 76 (144)
T ss_pred CEEeeCcchHHHHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHc----CCCceEEEEcCCcHHHHHHHhcC
Confidence 689999999999999999999999999999984 699999999999998 99999999999999999999999
Q ss_pred CceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhhhh
Q 021654 90 PGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCF 158 (309)
Q Consensus 90 ~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~~f 158 (309)
||||||+|+|+++|+|+|+|||+||||||+|++|+++|++|+++||+|+|++| +++++.+.|..+
T Consensus 77 ~GIraa~~~d~~~A~~ar~hNnaNVl~lGar~ig~~~a~~iv~~fL~t~f~gg----rh~~Rv~~i~~~ 141 (144)
T TIGR00689 77 KGIRAALCVDEYTAALARQHNDANVLCLGSRVVGVELALSIVDAFLTTQFEGG----RHQRRIDKIIEY 141 (144)
T ss_pred CCeEEEEECCHHHHHHHHHhcCCcEEEECccccCHHHHHHHHHHHHcCCCCCC----cHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999974 566666666554
No 13
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=100.00 E-value=1.2e-53 Score=360.75 Aligned_cols=124 Identities=39% Similarity=0.605 Sum_probs=116.0
Q ss_pred EEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCCC-----CcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcC
Q 021654 14 KIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSD-----YYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANK 88 (309)
Q Consensus 14 ki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~~-----y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK 88 (309)
||+|||||+|++||+.|++||+++||||+|+|+++ ||++|.+||++|.+ |+++|||+|||||+||+|+|||
T Consensus 1 KI~igsDh~g~~lK~~i~~~L~~~g~eV~D~G~~~~~~~dy~~~a~~va~~V~~----~~~d~GIliCgtGiG~~iaANK 76 (140)
T PF02502_consen 1 KIAIGSDHAGFELKEAIKEYLEEKGYEVIDFGTYSEDSVDYPDFAEKVAEAVAS----GEADRGILICGTGIGMSIAANK 76 (140)
T ss_dssp EEEEEE-GGGHHHHHHHHHHHHHTTEEEEEESESSTST--HHHHHHHHHHHHHT----TSSSEEEEEESSSHHHHHHHHT
T ss_pred CEEEEeCHHHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHc----ccCCeEEEEcCCChhhhhHhhc
Confidence 89999999999999999999999999999999974 99999999999999 9999999999999999999999
Q ss_pred CCceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCC
Q 021654 89 NPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKA 141 (309)
Q Consensus 89 ~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~ 141 (309)
|||||||+|+|+++|+|+|+|||+||||||+|++|+++|++|+++||+|+|++
T Consensus 77 ~~GIrAa~~~d~~~A~~ar~hNdaNVL~lG~~~~~~~~a~~i~~~~l~t~f~~ 129 (140)
T PF02502_consen 77 VPGIRAALCSDPYSAKMAREHNDANVLCLGARVIGEELAKEIVDAFLNTEFEG 129 (140)
T ss_dssp STT--EEE-SSHHHHHHHHHTT--SEEEEETTTSHHHHHHHHHHHHHHGGHHH
T ss_pred CCCEEEEeeCCHHHHHHHHHhcCCcEEEechhhccHHHHHHHHHHHhCCCCCc
Confidence 99999999999999999999999999999999999999999999999999986
No 14
>PRK09273 hypothetical protein; Provisional
Probab=100.00 E-value=3.1e-48 Score=344.03 Aligned_cols=150 Identities=21% Similarity=0.241 Sum_probs=141.3
Q ss_pred cEEEEEeCcccHH----HHHHHHHHHHhCCCcEEEecCC-------CCcchhHHHHHHhhcCCCCCCCceEEEEecCchh
Q 021654 13 LKIIAGADSFGAE----LKDALVSHLRSLNIDVEDLGTS-------DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVG 81 (309)
Q Consensus 13 mki~i~~D~~g~~----lk~~l~~~l~~~g~ev~d~G~~-------~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G 81 (309)
|||++....+... +-+.|++||+++||||+|+|++ |||++|.+||++|.+ |+++|||++||||+|
T Consensus 1 mkiali~e~sqa~kn~~i~~~L~~~L~~~G~eV~D~G~~~~~~~s~dYpd~a~~vA~~V~~----g~~d~GIliCGTGiG 76 (211)
T PRK09273 1 MKIALINENSQAAKNAIIYEALKKVADPKGHEVFNYGMYDEEDHQLTYVQNGIMASILLNS----KAVDFVVTGCGTGQG 76 (211)
T ss_pred CeEEeecccchhhhhHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCChHHHHHHHHHHHHc----CCCCEEEEEcCcHHH
Confidence 8999999988765 5578999999999999999982 699999999999998 999999999999999
Q ss_pred hhhhhcCCCceEEEEeCCHHHHHHhHhhcCceEeEeccc----cCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhhh
Q 021654 82 VAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGM----STSKESAVEILDTWLKTPFKAPCPASGFKPWEENISC 157 (309)
Q Consensus 82 ~~iaaNK~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~----~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~~ 157 (309)
|+|+||||||||||+|+|+++|+|+|+|||+||||||+| |+|+++|++|+++||+++|++|||.++.+|..+
T Consensus 77 ~siAANK~pGIraalc~d~~sA~lar~hNnaNVL~Lg~r~~~g~~g~~~a~~Ive~fl~tef~gGyp~er~~~~~~---- 152 (211)
T PRK09273 77 AMLALNSFPGVVCGYCIDPTDAYLFAQINNGNALSLPFAKGFGWGAELNLRYIFEKLFTGERGEGYPKERAEPQQR---- 152 (211)
T ss_pred HHHHHhcCCCeEEEEeCCHHHHHHHHHhcCCcEEEEcCCcCCCcccHHHHHHHHHHHHcCCccCCCChHHhhHHHh----
Confidence 999999999999999999999999999999999999999 999999999999999999999999999999887
Q ss_pred hhhhcccccccccc
Q 021654 158 FFDKSMTEMPLIGK 171 (309)
Q Consensus 158 fl~~sl~el~~i~~ 171 (309)
..+.|+++.+++.
T Consensus 153 -n~~~l~~~~~~~~ 165 (211)
T PRK09273 153 -NAGILNEVKAATY 165 (211)
T ss_pred -hHHHHHHHHHHHc
Confidence 6888888888874
No 15
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=99.42 E-value=1.2e-12 Score=96.67 Aligned_cols=68 Identities=26% Similarity=0.401 Sum_probs=62.1
Q ss_pred EEEEcCCCcCCCeecCCc-eEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEEc
Q 021654 217 IVRFKAGSVEPAHHHTFG-HDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD 286 (309)
Q Consensus 217 ~~~l~pG~~~p~H~H~~~-e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~ 286 (309)
+++++||...++|+|+.. |++||++|++++. .+++.+.+++||++++|++++|+++|.++.++.++++
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~--~~~~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V 70 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT--VDGERVELKPGDAIYIPPGVPHQVRNPGDEPARFLVV 70 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEE--ETTEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEE--EccEEeEccCCEEEEECCCCeEEEEECCCCCEEEEEE
Confidence 578999999999999999 8899999999995 5799999999999999999999999999998876553
No 16
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=99.23 E-value=2.3e-10 Score=100.85 Aligned_cols=142 Identities=15% Similarity=0.161 Sum_probs=95.8
Q ss_pred HHHHHHHHcCCCCCCCCCCCCChhhhhhhhhhhhccccccccccCCCCCCCCCCCccceeEEeecCCCCCeeecCCceEE
Q 021654 128 VEILDTWLKTPFKAPCPASGFKPWEENISCFFDKSMTEMPLIGKNDKLDSDSSSSTCSICCLVKNRELNPVEMIPGGSMK 207 (309)
Q Consensus 128 ~~i~~~~l~~~f~~~~p~~~~~~~~~~I~~fl~~sl~el~~i~~~~~~~~~~~~~~~~~~~v~~~~e~~~~~~~pgg~~~ 207 (309)
...+..|.+.... | .......|+++++-++.++..-..+ . ..| ..+++..+.... ...|.+++
T Consensus 34 ~~~is~~E~g~~~---p---~~~~l~~ia~~l~v~~~~l~~~~~~-~---~~~------~~v~~~~e~~~~-~~~g~~~~ 96 (185)
T PRK09943 34 HSAISTIEQDKVS---P---AISTLQKLLKVYGLSLSEFFSEPEK-P---DEP------QVVINQDDLIEM-GSQGVSMK 96 (185)
T ss_pred HHHHHHHHcCCCC---C---CHHHHHHHHHHhCCCHHHHccCccc-c---CCc------ceEEchhHhhcc-ccCCceEE
Confidence 4456677665442 2 2355678999999998887532211 1 111 134444443222 12344445
Q ss_pred EeeeC-CC-e---EEEEEcCCCcC-CCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceE
Q 021654 208 IIRES-PT-S---AIVRFKAGSVE-PAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEF 281 (309)
Q Consensus 208 il~~~-~~-~---~~~~l~pG~~~-p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~ 281 (309)
++... +. . .+.++.||... +.|+|+..|++||++|++++++ +++.+.|.+||++++|++++|+++|.++.++
T Consensus 97 ~l~~~~~~~~~~~~~~~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~--~~~~~~l~~Gd~~~~~~~~~H~~~n~~~~~~ 174 (185)
T PRK09943 97 LVHNGNPNRTLAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTI--NGQDYHLVAGQSYAINTGIPHSFSNTSAGIC 174 (185)
T ss_pred EeccCCCCCeeEEEEEEccCCCCcccccccCCcEEEEEEEeEEEEEE--CCEEEEecCCCEEEEcCCCCeeeeCCCCCCe
Confidence 54322 11 1 34578898865 5778999999999999999964 5999999999999999999999999998888
Q ss_pred EEEEcCc
Q 021654 282 FIKWDGR 288 (309)
Q Consensus 282 ~i~~~~~ 288 (309)
.++|...
T Consensus 175 ~~l~~~~ 181 (185)
T PRK09943 175 RIISAHT 181 (185)
T ss_pred EEEEEeC
Confidence 8777543
No 17
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=99.22 E-value=2.9e-10 Score=94.76 Aligned_cols=65 Identities=17% Similarity=0.186 Sum_probs=56.2
Q ss_pred EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEee-CCeEEEecCCcEEEECCCCeEEEEEcCCceE
Q 021654 216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLT-KGERFDLTVGDYLFTPAGDVHRVKYYEETEF 281 (309)
Q Consensus 216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~-~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~ 281 (309)
..++++||+..+.|+|...|++|||+|+++++. . +++++.|.|||++++|++.+|++.|.++..+
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~-i~~g~~~~L~aGD~i~~~~~~~H~~~N~e~~~~ 103 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVED-LATGEVHPIRPGTMYALDKHDRHYLRAGEDMRL 103 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEE-cCCCEEEEeCCCeEEEECCCCcEEEEcCCCEEE
Confidence 457999999999999877788999999999951 3 4899999999999999999999999844444
No 18
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.20 E-value=7.2e-11 Score=98.25 Aligned_cols=63 Identities=35% Similarity=0.557 Sum_probs=58.6
Q ss_pred EEEEEcCCCcCCCeecC-CceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCce
Q 021654 216 AIVRFKAGSVEPAHHHT-FGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE 280 (309)
Q Consensus 216 ~~~~l~pG~~~p~H~H~-~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~ 280 (309)
..++++||...++|.|+ ..+.+|||+|++++++. ++.+.+.+||++++|+|++|++.|.++..
T Consensus 46 ~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~--g~~~~l~~Gd~i~ip~g~~H~~~a~~~~~ 109 (131)
T COG1917 46 VLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE--GEKKELKAGDVIIIPPGVVHGLKAVEDEP 109 (131)
T ss_pred EEEEECCCcccccccCCCcceEEEEEecEEEEEec--CCceEecCCCEEEECCCCeeeeccCCCCc
Confidence 57899999999999999 77889999999999754 99999999999999999999999999885
No 19
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.19 E-value=2.2e-10 Score=95.46 Aligned_cols=83 Identities=28% Similarity=0.442 Sum_probs=65.5
Q ss_pred ecCCceEEEeeeCCC--eEEEEEcCCCcCCCeecCC-ceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEc
Q 021654 200 MIPGGSMKIIRESPT--SAIVRFKAGSVEPAHHHTF-GHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYY 276 (309)
Q Consensus 200 ~~pgg~~~il~~~~~--~~~~~l~pG~~~p~H~H~~-~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~ 276 (309)
..+++....+..... ...+.+.||...++|.|.. +|.+||++|++.+++ +++...|++||+++||+|++|+++|+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~--~~~~~~v~~gd~~~iP~g~~H~~~N~ 98 (127)
T COG0662 21 FRPWGSYTVLDAGDRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTI--GGEEVEVKAGDSVYIPAGTPHRVRNT 98 (127)
T ss_pred EeCCcceeecccCCcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEE--CCEEEEecCCCEEEECCCCcEEEEcC
Confidence 445555555443333 2678899999876665554 777999999999965 59999999999999999999999999
Q ss_pred CCceEEEE
Q 021654 277 EETEFFIK 284 (309)
Q Consensus 277 gd~~~~i~ 284 (309)
+..++.+.
T Consensus 99 G~~~L~li 106 (127)
T COG0662 99 GKIPLVLI 106 (127)
T ss_pred CCcceEEE
Confidence 99887644
No 20
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.09 E-value=8.1e-10 Score=110.78 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=75.5
Q ss_pred eeecCCceEEEeeeCCCe--EEEEEcCCCcCCCeecCC-ceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEE
Q 021654 198 VEMIPGGSMKIIRESPTS--AIVRFKAGSVEPAHHHTF-GHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274 (309)
Q Consensus 198 ~~~~pgg~~~il~~~~~~--~~~~l~pG~~~p~H~H~~-~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~ 274 (309)
....|||..+++..+... ..+++.||...+.|.|.. .|.+||++|+++++ .+++++.|.+||++++|++++|++.
T Consensus 359 ~~~~pWG~~~~~~~~~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~--~dg~~~~l~~GDsi~ip~~~~H~~~ 436 (468)
T TIGR01479 359 EVYRPWGKYDSIDQGDRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVT--IGDETLLLTENESTYIPLGVIHRLE 436 (468)
T ss_pred eEECCCCceEEEecCCCEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEE--ECCEEEEecCCCEEEECCCCcEEEE
Confidence 446889988887776554 778999999888776654 44489999999995 5699999999999999999999999
Q ss_pred EcCCceEEEEEcCccc
Q 021654 275 YYEETEFFIKWDGRWD 290 (309)
Q Consensus 275 n~gd~~~~i~~~~~~~ 290 (309)
|.+++++.++|...-.
T Consensus 437 N~g~~~~~~i~v~~~~ 452 (468)
T TIGR01479 437 NPGKIPLELIEVQSGS 452 (468)
T ss_pred cCCCCCEEEEEEEcCC
Confidence 9999999888776544
No 21
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=99.07 E-value=1.6e-09 Score=93.01 Aligned_cols=85 Identities=24% Similarity=0.336 Sum_probs=72.7
Q ss_pred eeecCCceEEEeeeCCCe--EEEEEcCCCcCCCeecCCceE-EEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEE
Q 021654 198 VEMIPGGSMKIIRESPTS--AIVRFKAGSVEPAHHHTFGHD-LVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274 (309)
Q Consensus 198 ~~~~pgg~~~il~~~~~~--~~~~l~pG~~~p~H~H~~~e~-vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~ 274 (309)
....|||..+++...+.. ..+++.||...++|.|....+ .+|++|++.+. .+++.+.+.+||+++||+|..|++.
T Consensus 46 ~~~rpWG~~~~l~~~~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~--~~~~~~~~~~g~sv~Ip~g~~H~i~ 123 (151)
T PF01050_consen 46 RVYRPWGSYEVLDEGEGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVT--LDDEEFTLKEGDSVYIPRGAKHRIE 123 (151)
T ss_pred eEecCCcEEEEEEccCCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEE--ECCEEEEEcCCCEEEECCCCEEEEE
Confidence 345799999988877665 678999999999998875444 89999999995 4699999999999999999999999
Q ss_pred EcCCceEEEE
Q 021654 275 YYEETEFFIK 284 (309)
Q Consensus 275 n~gd~~~~i~ 284 (309)
|.++.++.+.
T Consensus 124 n~g~~~L~~I 133 (151)
T PF01050_consen 124 NPGKTPLEII 133 (151)
T ss_pred CCCCcCcEEE
Confidence 9998886543
No 22
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.04 E-value=1.4e-09 Score=109.18 Aligned_cols=90 Identities=17% Similarity=0.154 Sum_probs=71.9
Q ss_pred eecCCceEEEeeeCCCe--EEEEEcCCCcCCCeecCC-ceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEE
Q 021654 199 EMIPGGSMKIIRESPTS--AIVRFKAGSVEPAHHHTF-GHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKY 275 (309)
Q Consensus 199 ~~~pgg~~~il~~~~~~--~~~~l~pG~~~p~H~H~~-~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n 275 (309)
...|||....+...... ..+++.||...+.|.|.. .|.+||++|+++++ .+++++.|.|||++++|++.+|+++|
T Consensus 369 ~~rpWG~~~~l~~g~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~--idg~~~~L~~GDSi~ip~g~~H~~~N 446 (478)
T PRK15460 369 VYRPWGKYDSIDAGDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVT--IDGDIKLLGENESIYIPLGATHCLEN 446 (478)
T ss_pred EECCCCceEeecCCCcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEE--ECCEEEEecCCCEEEECCCCcEEEEc
Confidence 45788877766555443 678999998775554433 46699999999995 46999999999999999999999999
Q ss_pred cCCceEEEEEcCccc
Q 021654 276 YEETEFFIKWDGRWD 290 (309)
Q Consensus 276 ~gd~~~~i~~~~~~~ 290 (309)
.++.++.++|+..-.
T Consensus 447 ~g~~~l~iI~V~~g~ 461 (478)
T PRK15460 447 PGKIPLDLIEVRSGS 461 (478)
T ss_pred CCCCCEEEEEEEcCC
Confidence 999999888775443
No 23
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.02 E-value=4.8e-09 Score=102.17 Aligned_cols=93 Identities=24% Similarity=0.417 Sum_probs=72.1
Q ss_pred ecCCCCCeeecCCceEEEeeeC--CC-----eEEEEEcCCCcCCCeecCC-ceEEEEEecEEEEEEee---CCeEEEecC
Q 021654 191 KNRELNPVEMIPGGSMKIIRES--PT-----SAIVRFKAGSVEPAHHHTF-GHDLVVLQGKKSVWNLT---KGERFDLTV 259 (309)
Q Consensus 191 ~~~e~~~~~~~pgg~~~il~~~--~~-----~~~~~l~pG~~~p~H~H~~-~e~vyVlsG~l~v~i~~---~~~~~~L~p 259 (309)
+-.+.++ ...+||+.+++... |. ...+++.||...++|||+. .|++||++|++++++.. +++++.+++
T Consensus 217 ~~~~~~p-~~~~gG~~~~~~~~~~p~~~~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~ 295 (367)
T TIGR03404 217 HLSEQKP-KQVPGGTVRIADSTNFPVSKTIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQA 295 (367)
T ss_pred EhhhCCc-eecCCceEEEEChhhccCcceEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECC
Confidence 3344444 45678888866442 21 1678999999999999996 56699999999997642 246899999
Q ss_pred CcEEEECCCCeEEEEEcCCceEEEE
Q 021654 260 GDYLFTPAGDVHRVKYYEETEFFIK 284 (309)
Q Consensus 260 GD~v~IP~g~~H~~~n~gd~~~~i~ 284 (309)
||.+++|+|..|+++|.+++++.++
T Consensus 296 GD~~~iP~g~~H~i~N~G~e~l~fL 320 (367)
T TIGR03404 296 GDVGYVPRNMGHYVENTGDETLVFL 320 (367)
T ss_pred CCEEEECCCCeEEEEECCCCCEEEE
Confidence 9999999999999999998776433
No 24
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.98 E-value=2.9e-09 Score=99.14 Aligned_cols=67 Identities=25% Similarity=0.330 Sum_probs=60.0
Q ss_pred EEEEEcCCCcCCC-eecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEE
Q 021654 216 AIVRFKAGSVEPA-HHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK 284 (309)
Q Consensus 216 ~~~~l~pG~~~p~-H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~ 284 (309)
.+++++||...+. |+|..+|.+|||+|++.+. .+++.+.+.+||++||||+++|.+.|+|++++.++
T Consensus 182 ~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~--~~g~~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l 249 (260)
T TIGR03214 182 HILSFEPGASHPYIETHVMEHGLYVLEGKGVYN--LDNNWVPVEAGDYIWMGAYCPQACYAGGRGEFRYL 249 (260)
T ss_pred EEEEECCCcccCCcccccceeEEEEEeceEEEE--ECCEEEEecCCCEEEECCCCCEEEEecCCCcEEEE
Confidence 6799999999996 6677778899999999995 56999999999999999999999999999887543
No 25
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=98.95 E-value=9e-09 Score=87.37 Aligned_cols=71 Identities=23% Similarity=0.228 Sum_probs=59.8
Q ss_pred EEEEEcCCCcCCCeecC-CceEEEEEecEEEEEEeeCC----eEEEecCCcEEEECCCCeEEEEEcCCceEEEEEc
Q 021654 216 AIVRFKAGSVEPAHHHT-FGHDLVVLQGKKSVWNLTKG----ERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD 286 (309)
Q Consensus 216 ~~~~l~pG~~~p~H~H~-~~e~vyVlsG~l~v~i~~~~----~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~ 286 (309)
..++++||+..++|+|+ ..|.+||++|++++.+...+ ..+.+.+||++++|+++.|.+.|.++.++.+++.
T Consensus 33 ~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~~ 108 (146)
T smart00835 33 ARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQGHPHFQVNSGDENLEFVAF 108 (146)
T ss_pred EEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEECCCCEEEEEcCCCCCEEEEEE
Confidence 56789999999999997 66789999999999754221 1899999999999999999999998877765543
No 26
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=98.93 E-value=8.4e-09 Score=80.84 Aligned_cols=79 Identities=28% Similarity=0.453 Sum_probs=62.1
Q ss_pred ecCCceEEEeeeCC-C----eEEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEE
Q 021654 200 MIPGGSMKIIRESP-T----SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274 (309)
Q Consensus 200 ~~pgg~~~il~~~~-~----~~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~ 274 (309)
..+|.+++.+...+ . ..++++.||...|.|.|+..+++|||+|++.. . +. ...+||+++.|+|..|+..
T Consensus 6 ~~~Gv~~~~L~~~~~~~g~~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d--~--~~--~~~~G~~~~~p~g~~h~~~ 79 (91)
T PF12973_consen 6 PRPGVSVKPLHRDEGETGERVSLLRLEPGASLPRHRHPGGEEILVLEGELSD--G--DG--RYGAGDWLRLPPGSSHTPR 79 (91)
T ss_dssp CSTTEEEEEEEECSSSTTEEEEEEEE-TTEEEEEEEESS-EEEEEEECEEEE--T--TC--EEETTEEEEE-TTEEEEEE
T ss_pred CCCCEEEEEeccCCCcccCEEEEEEECCCCCcCccCCCCcEEEEEEEEEEEE--C--Cc--cCCCCeEEEeCCCCccccC
Confidence 35677777776544 2 37899999999999999999999999999997 3 44 4599999999999999999
Q ss_pred EcCCceEEEE
Q 021654 275 YYEETEFFIK 284 (309)
Q Consensus 275 n~gd~~~~i~ 284 (309)
..+++.++++
T Consensus 80 s~~gc~~~vk 89 (91)
T PF12973_consen 80 SDEGCLILVK 89 (91)
T ss_dssp ESSCEEEEEE
T ss_pred cCCCEEEEEE
Confidence 8777766654
No 27
>PRK11171 hypothetical protein; Provisional
Probab=98.91 E-value=5.9e-09 Score=97.37 Aligned_cols=68 Identities=24% Similarity=0.307 Sum_probs=60.7
Q ss_pred EEEEEcCCCcCCCe-ecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEE
Q 021654 216 AIVRFKAGSVEPAH-HHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKW 285 (309)
Q Consensus 216 ~~~~l~pG~~~p~H-~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~ 285 (309)
..++++||...+.| +|...|.+||++|+++++ .+++++.|.+||+++++++.+|.++|.+++++.+++
T Consensus 187 ~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~--~~~~~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~ 255 (266)
T PRK11171 187 NIVTFEPGASIPFVETHVMEHGLYVLEGKGVYR--LNNDWVEVEAGDFIWMRAYCPQACYAGGPGPFRYLL 255 (266)
T ss_pred EEEEECCCCEEccCcCCCceEEEEEEeCEEEEE--ECCEEEEeCCCCEEEECCCCCEEEECCCCCcEEEEE
Confidence 56899999999884 788888899999999995 569999999999999999999999999988876543
No 28
>PRK11171 hypothetical protein; Provisional
Probab=98.85 E-value=3.1e-08 Score=92.48 Aligned_cols=70 Identities=17% Similarity=0.301 Sum_probs=59.7
Q ss_pred EEEEEcCCCcCCCeecC--CceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEEcC
Q 021654 216 AIVRFKAGSVEPAHHHT--FGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDG 287 (309)
Q Consensus 216 ~~~~l~pG~~~p~H~H~--~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~~ 287 (309)
.++++.||+....|.|. ..|++||++|+++++ .+++++.|.+||++++|++.+|+++|.++.++.++|..
T Consensus 64 ~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~--~~g~~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l~v~ 135 (266)
T PRK11171 64 YLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLT--LEGKTHALSEGGYAYLPPGSDWTLRNAGAEDARFHWIR 135 (266)
T ss_pred EEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEE--ECCEEEEECCCCEEEECCCCCEEEEECCCCCEEEEEEE
Confidence 67889999887666554 456699999999996 46999999999999999999999999998888777663
No 29
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.82 E-value=1.9e-08 Score=85.82 Aligned_cols=72 Identities=19% Similarity=0.263 Sum_probs=61.9
Q ss_pred EEEEEcCCCc-CCCeecCCceE-EEEEecEEEEEEeeCCeEEEecCCcEEEECCC--CeEEEEEcCCceEEEEEcCcc
Q 021654 216 AIVRFKAGSV-EPAHHHTFGHD-LVVLQGKKSVWNLTKGERFDLTVGDYLFTPAG--DVHRVKYYEETEFFIKWDGRW 289 (309)
Q Consensus 216 ~~~~l~pG~~-~p~H~H~~~e~-vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g--~~H~~~n~gd~~~~i~~~~~~ 289 (309)
-+..++||.. ...|||..+++ +|||+|++++++ ++..+.|+|||++=+|+| +-|.+.|.++..++++-+|..
T Consensus 45 n~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~--d~~e~~lrpGD~~gFpAG~~~aHhliN~s~~~~~yL~vG~r 120 (161)
T COG3837 45 NLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRE--DGGETRLRPGDSAGFPAGVGNAHHLINRSDVILRYLEVGTR 120 (161)
T ss_pred ceEEeCCCCccccccccccCceEEEEEcCceEEEE--CCeeEEecCCceeeccCCCcceeEEeecCCceEEEEEeccc
Confidence 3567899875 57899986555 999999999964 599999999999999999 999999999999988777754
No 30
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=98.81 E-value=3.9e-08 Score=95.81 Aligned_cols=79 Identities=23% Similarity=0.410 Sum_probs=62.8
Q ss_pred ecCCceEEEeeeC--CC-----eEEEEEcCCCcCCCeecCCceEEEEEecEEEEEEee-CCeEE--EecCCcEEEECCCC
Q 021654 200 MIPGGSMKIIRES--PT-----SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLT-KGERF--DLTVGDYLFTPAGD 269 (309)
Q Consensus 200 ~~pgg~~~il~~~--~~-----~~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~-~~~~~--~L~pGD~v~IP~g~ 269 (309)
+.+||..+.+... |. ...+++.||+..++|||...|++||++|++++++.. +++.+ .|++||++++|+|.
T Consensus 47 ~~~gG~~~~~~~~~lP~l~~ls~~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~fP~g~ 126 (367)
T TIGR03404 47 LENGGWAREVTVRDLPISTAIAGVNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWYFPPGI 126 (367)
T ss_pred cccCceEEEeChhhccCcccccceEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEECCCC
Confidence 3466766544221 22 267899999999999999999999999999998742 35666 49999999999999
Q ss_pred eEEEEEcCC
Q 021654 270 VHRVKYYEE 278 (309)
Q Consensus 270 ~H~~~n~gd 278 (309)
+|+++|.++
T Consensus 127 ~H~~~n~~~ 135 (367)
T TIGR03404 127 PHSLQGLDE 135 (367)
T ss_pred eEEEEECCC
Confidence 999999864
No 31
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.78 E-value=4e-08 Score=91.51 Aligned_cols=70 Identities=20% Similarity=0.244 Sum_probs=59.1
Q ss_pred EEEEEcCCCcCC-CeecCC-ceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEEcC
Q 021654 216 AIVRFKAGSVEP-AHHHTF-GHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDG 287 (309)
Q Consensus 216 ~~~~l~pG~~~p-~H~H~~-~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~~ 287 (309)
.+++++||+..+ .|+|+. ++++||++|+++++ .+++++.|.+||++++|++.+|+++|.++.++.++|..
T Consensus 61 ~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~--~~g~~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l~v~ 132 (260)
T TIGR03214 61 YIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVT--AEGETHELREGGYAYLPPGSKWTLANAQAEDARFFLYK 132 (260)
T ss_pred EEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEE--ECCEEEEECCCCEEEECCCCCEEEEECCCCCEEEEEEE
Confidence 578899987654 445665 56799999999996 46999999999999999999999999998888877655
No 32
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=98.77 E-value=9.2e-08 Score=80.98 Aligned_cols=63 Identities=24% Similarity=0.342 Sum_probs=51.0
Q ss_pred EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCC--------eEEE--ecCCcEEEECCCCeEEEEEcCC
Q 021654 216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKG--------ERFD--LTVGDYLFTPAGDVHRVKYYEE 278 (309)
Q Consensus 216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~--------~~~~--L~pGD~v~IP~g~~H~~~n~gd 278 (309)
....++||+...+|||...+++||++|++++.+...+ .... +++||++++|+|.+|.+.|.++
T Consensus 37 ~~~~i~pg~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~ 109 (144)
T PF00190_consen 37 RRVLIEPGGLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVVPAGHPHWIINDGD 109 (144)
T ss_dssp EEEEEETTEEEEEEEESSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEEE-TT-EEEEEECSS
T ss_pred EeeehhcCCccceeEeeeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccceeeccceeEEEEcCCC
Confidence 3456799999999999888889999999998655443 2344 9999999999999999999973
No 33
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.74 E-value=7e-08 Score=83.25 Aligned_cols=62 Identities=13% Similarity=0.087 Sum_probs=53.1
Q ss_pred cCCCcCCCeecCCceEEEEEecEEEEEEeeCCe--EEEecCCcEEEECCCCeEEEEEcCCceEE
Q 021654 221 KAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGE--RFDLTVGDYLFTPAGDVHRVKYYEETEFF 282 (309)
Q Consensus 221 ~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~--~~~L~pGD~v~IP~g~~H~~~n~gd~~~~ 282 (309)
-||....+|.|+.+|++|+++|.+.+.+..+++ ...|++||++++|+|++|+....+++..+
T Consensus 36 Gpn~R~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~flvP~gvpHsP~r~~~t~~L 99 (159)
T TIGR03037 36 GPNARTDFHDDPGEEFFYQLKGEMYLKVTEEGKREDVPIREGDIFLLPPHVPHSPQRPAGSIGL 99 (159)
T ss_pred CCCCCcccccCCCceEEEEEcceEEEEEEcCCcEEEEEECCCCEEEeCCCCCcccccCCCcEEE
Confidence 567778899999999999999999997754443 89999999999999999999887666654
No 34
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=98.74 E-value=3.2e-08 Score=80.78 Aligned_cols=68 Identities=22% Similarity=0.390 Sum_probs=58.4
Q ss_pred EEEEEcCCCcCCCeecCCceE-EEEEecEEEEEEee-CCeEEEecCCcEEEECCCCeEEEEEcCCceEEE
Q 021654 216 AIVRFKAGSVEPAHHHTFGHD-LVVLQGKKSVWNLT-KGERFDLTVGDYLFTPAGDVHRVKYYEETEFFI 283 (309)
Q Consensus 216 ~~~~l~pG~~~p~H~H~~~e~-vyVlsG~l~v~i~~-~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i 283 (309)
..++++||.....|.|..-|. +|||+|+..+|.+. =.++.++.|||++|||||+||.-.|.++.++..
T Consensus 49 ~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~ 118 (142)
T COG4101 49 HLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNRLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSA 118 (142)
T ss_pred EEEeeCCCccccccccccccEEEEEEeceeeeeeccceeeeEEecCCCeEEcCCCCCCcccccCCCCeEE
Confidence 678999999999999988887 99999999998531 124678999999999999999999999877653
No 35
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.72 E-value=9.3e-08 Score=83.74 Aligned_cols=62 Identities=11% Similarity=0.055 Sum_probs=53.5
Q ss_pred cCCCcCCCeecCCceEEEEEecEEEEEEeeCC--eEEEecCCcEEEECCCCeEEEEEcCCceEE
Q 021654 221 KAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKG--ERFDLTVGDYLFTPAGDVHRVKYYEETEFF 282 (309)
Q Consensus 221 ~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~--~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~ 282 (309)
-||....+|.|+.+|++|+++|.+.+.+..++ +...|++||++++|+|++|+.....++..+
T Consensus 42 Gpn~r~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fllP~gvpHsP~r~~~tv~L 105 (177)
T PRK13264 42 GPNARTDFHYDPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMFLLPPHVPHSPQREAGSIGL 105 (177)
T ss_pred cCCcccccccCCCceEEEEECCeEEEEEEcCCceeeEEECCCCEEEeCCCCCcCCccCCCeEEE
Confidence 57788999999999999999999999775445 589999999999999999999886665544
No 36
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.66 E-value=9.7e-08 Score=77.23 Aligned_cols=59 Identities=24% Similarity=0.396 Sum_probs=44.2
Q ss_pred CCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEE
Q 021654 222 AGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF 282 (309)
Q Consensus 222 pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~ 282 (309)
++...++|+|+..++.||++|++++. ++++.+.++|||.+++||+.+|++....+.+..
T Consensus 12 ~~~~~~~h~h~~~~i~~v~~G~~~~~--~~~~~~~l~~g~~~li~p~~~H~~~~~~~~~~~ 70 (136)
T PF02311_consen 12 PNFEFPPHWHDFYEIIYVLSGEGTLH--IDGQEYPLKPGDLFLIPPGQPHSYYPDSNEPWE 70 (136)
T ss_dssp TT-SEEEETT-SEEEEEEEEE-EEEE--ETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEE
T ss_pred CCCccCCEECCCEEEEEEeCCEEEEE--ECCEEEEEECCEEEEecCCccEEEecCCCCCEE
Confidence 44566889999999999999999995 569999999999999999999999998854443
No 37
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=98.65 E-value=2.7e-07 Score=82.29 Aligned_cols=70 Identities=17% Similarity=0.200 Sum_probs=56.5
Q ss_pred EEEEEcCCCc------CCCeecCC---ceEEEEEecEEEEEEeeCC---eEEEecCCcEEEECCCCeEEEEEcCCceEEE
Q 021654 216 AIVRFKAGSV------EPAHHHTF---GHDLVVLQGKKSVWNLTKG---ERFDLTVGDYLFTPAGDVHRVKYYEETEFFI 283 (309)
Q Consensus 216 ~~~~l~pG~~------~p~H~H~~---~e~vyVlsG~l~v~i~~~~---~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i 283 (309)
.+.++.||.. .+.|+|+. .|.+||++|+..+.++..+ ..+.+.|||.++||++..|++.|+++.++.+
T Consensus 71 g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~iN~G~epl~f 150 (191)
T PRK04190 71 GTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAHRSVNTGDEPLVF 150 (191)
T ss_pred EEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcEEeEECCCCCEEE
Confidence 5678889886 56799964 4779999999999765221 2689999999999999999999999888754
Q ss_pred EE
Q 021654 284 KW 285 (309)
Q Consensus 284 ~~ 285 (309)
+.
T Consensus 151 l~ 152 (191)
T PRK04190 151 LA 152 (191)
T ss_pred EE
Confidence 43
No 38
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=98.61 E-value=2.9e-07 Score=82.39 Aligned_cols=72 Identities=18% Similarity=0.193 Sum_probs=62.0
Q ss_pred eEEEEEcCCCcCCCeecCCce---EEEEEecEEEEEEeeCC---eEEEecCCcEEEECCCCeEEEEEcCCceEEEEEc
Q 021654 215 SAIVRFKAGSVEPAHHHTFGH---DLVVLQGKKSVWNLTKG---ERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD 286 (309)
Q Consensus 215 ~~~~~l~pG~~~p~H~H~~~e---~vyVlsG~l~v~i~~~~---~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~ 286 (309)
+.++.+.+|+....|||+..+ +.||++|++++.++... .+..+++||.+|||++--|+..|+|+.++.+...
T Consensus 82 g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v 159 (209)
T COG2140 82 GAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNV 159 (209)
T ss_pred ceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcCCCcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEE
Confidence 478899999999999997543 58999999999877555 6788999999999999999999999999865433
No 39
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=98.55 E-value=1.2e-06 Score=79.70 Aligned_cols=71 Identities=21% Similarity=0.487 Sum_probs=54.9
Q ss_pred EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceE-EEEEcCccc
Q 021654 216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEF-FIKWDGRWD 290 (309)
Q Consensus 216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~-~i~~~~~~~ 290 (309)
.++++.. +..+|| +.+.|..||++|++++++ +++++.++|||++|||+|..|.+...+...+ +++|.+.|.
T Consensus 160 Gf~~~~~-~sf~wt-l~~dEi~YVLEGe~~l~I--dG~t~~l~pGDvlfIPkGs~~hf~tp~~aRflyV~~Pa~w~ 231 (233)
T PRK15457 160 GFMQWEN-AFFPWT-LNYDEIDMVLEGELHVRH--EGETMIAKAGDVMFIPKGSSIEFGTPSSVRFLYVAWPANWQ 231 (233)
T ss_pred EEEEEec-Ccccee-ccceEEEEEEEeEEEEEE--CCEEEEeCCCcEEEECCCCeEEecCCCCeeEEEEEecCccc
Confidence 5666664 334433 467788999999999964 6999999999999999999988876655444 567777774
No 40
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=98.51 E-value=7.6e-07 Score=75.54 Aligned_cols=67 Identities=24% Similarity=0.420 Sum_probs=42.6
Q ss_pred EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeC-------CeEEEecCCcEEEECCCCeEEEEEcCC-ceEE
Q 021654 216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTK-------GERFDLTVGDYLFTPAGDVHRVKYYEE-TEFF 282 (309)
Q Consensus 216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~-------~~~~~L~pGD~v~IP~g~~H~~~n~gd-~~~~ 282 (309)
.+.++.||...|.|.|..+|.++||+|++++.+... -+++.+.|++.++||++.+|+++|+++ +++.
T Consensus 47 wlQTfAPG~~TPiHRHsCEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlq 121 (167)
T PF02041_consen 47 WLQTFAPGSATPIHRHSCEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQ 121 (167)
T ss_dssp EEEEE-TT-B--EEEESS-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EE
T ss_pred EeeeecCCCCCCCccccccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCCCCcceE
Confidence 567999999999999999999999999999976411 246889999999999999999999983 5543
No 41
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=98.39 E-value=7.8e-07 Score=84.27 Aligned_cols=63 Identities=14% Similarity=0.057 Sum_probs=53.7
Q ss_pred EEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceE
Q 021654 217 IVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEF 281 (309)
Q Consensus 217 ~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~ 281 (309)
+...++....++|||...|++|+++|.+.++ ++++.+.++|||.+++|++++|.+...++...
T Consensus 30 ~~~~~~~~m~~~HwH~e~Ei~yv~~G~~~~~--i~g~~~~l~~Gd~ili~s~~~H~~~~~~~~~~ 92 (302)
T PRK10371 30 IEFRPPHIMPTSHWHGQVEVNVPFDGDVEYL--INNEKVQINQGHITLFWACTPHQLTDPGNCRS 92 (302)
T ss_pred EEeeCCCCCCCCCccccEEEEEecCCcEEEE--ECCEEEEEcCCcEEEEecCCcccccccCCCce
Confidence 3455566778999999999999999999995 56999999999999999999999877665543
No 42
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=98.25 E-value=3.7e-06 Score=76.31 Aligned_cols=70 Identities=21% Similarity=0.168 Sum_probs=59.5
Q ss_pred eEEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCC--ceEEEEEcCccc
Q 021654 215 SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEE--TEFFIKWDGRWD 290 (309)
Q Consensus 215 ~~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd--~~~~i~~~~~~~ 290 (309)
..++++.||...|.|.|...|+.+||+|.+. ++.-.+.+||+++.|++..|+..+.++ +.++..+++++.
T Consensus 129 v~Ll~i~pG~~~p~H~H~G~E~tlVLeG~f~------de~g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v~dapl~ 200 (215)
T TIGR02451 129 VRLLYIEAGQSIPQHTHKGFELTLVLHGAFS------DETGVYGVGDFEEADGSVQHQPRTVSGGDCLCLAVLDAPLR 200 (215)
T ss_pred EEEEEECCCCccCCCcCCCcEEEEEEEEEEE------cCCCccCCCeEEECCCCCCcCcccCCCCCeEEEEEecCCcc
Confidence 4789999999999999999998899999954 233467999999999999999999965 677777777764
No 43
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=98.16 E-value=7.8e-06 Score=75.80 Aligned_cols=52 Identities=33% Similarity=0.467 Sum_probs=46.0
Q ss_pred CCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEc
Q 021654 223 GSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYY 276 (309)
Q Consensus 223 G~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~ 276 (309)
+...++|||+..|++||++|++++++ +++.+.++|||.++||||+.|.....
T Consensus 33 ~~~~~~H~H~~~ei~~v~~G~~~~~i--~~~~~~l~~g~l~~i~p~~~H~~~~~ 84 (278)
T PRK10296 33 ESVSGLHQHDYYEFTLVLTGRYYQEI--NGKRVLLERGDFVFIPLGSHHQSFYE 84 (278)
T ss_pred hcCCCCcccccEEEEEEEeceEEEEE--CCEEEEECCCcEEEeCCCCccceeee
Confidence 44568999999999999999999964 59999999999999999999977543
No 44
>PRK13501 transcriptional activator RhaR; Provisional
Probab=98.13 E-value=6.6e-06 Score=76.90 Aligned_cols=57 Identities=19% Similarity=0.293 Sum_probs=49.3
Q ss_pred CCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCce
Q 021654 222 AGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE 280 (309)
Q Consensus 222 pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~ 280 (309)
+....++|||+..|++|+++|++++. ++++.+.+.+||.++||||.+|.+...++..
T Consensus 27 ~~~~~~~H~H~~~ei~~i~~G~~~~~--i~~~~~~l~~g~~~~I~p~~~H~~~~~~~~~ 83 (290)
T PRK13501 27 PQETFVEHTHQFCEIVIVWRGNGLHV--LNDHPYRITCGDVFYIQAADHHSYESVHDLV 83 (290)
T ss_pred CCCCCccccccceeEEEEecCceEEE--ECCeeeeecCCeEEEEcCCCcccccccCCeE
Confidence 34456799999999999999999995 4699999999999999999999988765544
No 45
>PRK13500 transcriptional activator RhaR; Provisional
Probab=98.04 E-value=1.4e-05 Score=75.95 Aligned_cols=56 Identities=21% Similarity=0.312 Sum_probs=48.9
Q ss_pred CCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCce
Q 021654 223 GSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE 280 (309)
Q Consensus 223 G~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~ 280 (309)
....++|+|+..|++||++|++.+. ++++.+.+.+||.++|||+.+|.+....+..
T Consensus 58 ~~~~~~H~H~~~el~~v~~G~g~~~--v~~~~~~l~~Gdl~~I~~~~~H~~~~~~~~~ 113 (312)
T PRK13500 58 QDVFAEHTHDFCELVIVWRGNGLHV--LNDRPYRITRGDLFYIHADDKHSYASVNDLV 113 (312)
T ss_pred CCCCCccccceEEEEEEEcCeEEEE--ECCEEEeecCCeEEEECCCCeecccccCCce
Confidence 3456899999999999999999995 5699999999999999999999988766543
No 46
>PRK13502 transcriptional activator RhaR; Provisional
Probab=98.04 E-value=1.3e-05 Score=74.48 Aligned_cols=58 Identities=21% Similarity=0.276 Sum_probs=49.9
Q ss_pred cCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCce
Q 021654 221 KAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE 280 (309)
Q Consensus 221 ~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~ 280 (309)
.|....++|+|+..+++||++|++++. ++++++.++|||.++|||+.+|.+...++..
T Consensus 26 ~~~~~~~~H~h~~~~l~~v~~G~~~~~--i~~~~~~l~~g~l~li~~~~~H~~~~~~~~~ 83 (282)
T PRK13502 26 YPQDVFAEHTHEFCELVMVWRGNGLHV--LNERPYRITRGDLFYIRAEDKHSYTSVNDLV 83 (282)
T ss_pred CCCCCCCccccceEEEEEEecCcEEEE--ECCEEEeecCCcEEEECCCCcccccccCCce
Confidence 345557899999999999999999995 5699999999999999999999987655533
No 47
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=98.01 E-value=1.4e-05 Score=74.26 Aligned_cols=56 Identities=14% Similarity=0.220 Sum_probs=48.7
Q ss_pred CCcCCCeecC-CceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCce
Q 021654 223 GSVEPAHHHT-FGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE 280 (309)
Q Consensus 223 G~~~p~H~H~-~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~ 280 (309)
+...++|||. ..+++|+++|.+.+. .+++.+.+++||.+++||+++|++....+..
T Consensus 33 ~~~~~~H~H~~~~~l~~~~~G~~~~~--~~~~~~~l~~g~~~ii~~~~~H~~~~~~~~~ 89 (287)
T TIGR02297 33 GRNMPVHFHDRYYQLHYLTEGSIALQ--LDEHEYSEYAPCFFLTPPSVPHGFVTDLDAD 89 (287)
T ss_pred CCCCCCcccccceeEEEEeeCceEEE--ECCEEEEecCCeEEEeCCCCccccccCCCcc
Confidence 4567999998 799999999999984 5689999999999999999999997765543
No 48
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=98.00 E-value=6.5e-05 Score=58.55 Aligned_cols=68 Identities=19% Similarity=0.274 Sum_probs=50.2
Q ss_pred EEEEEcCCCcC-CCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEE
Q 021654 216 AIVRFKAGSVE-PAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKW 285 (309)
Q Consensus 216 ~~~~l~pG~~~-p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~ 285 (309)
..+.++||+.- +.+.+...-.+||++|.+++++ .+.++.+.+|++++||+|-...++|.++.+..+.+
T Consensus 15 G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti--~~~~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~LfF 83 (85)
T PF11699_consen 15 GMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTI--HETSFVVTKGGSFQVPRGNYYSIKNIGNEEAKLFF 83 (85)
T ss_dssp EEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEE--TTEEEEEETT-EEEE-TT-EEEEEE-SSS-EEEEE
T ss_pred EEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEE--cCcEEEEeCCCEEEECCCCEEEEEECCCCcEEEEE
Confidence 67889998765 4455555555999999999965 58999999999999999999999999998887654
No 49
>PLN00212 glutelin; Provisional
Probab=97.98 E-value=3.9e-05 Score=77.32 Aligned_cols=67 Identities=15% Similarity=0.104 Sum_probs=58.0
Q ss_pred EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCC----------------------------eEEEecCCcEEEECC
Q 021654 216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKG----------------------------ERFDLTVGDYLFTPA 267 (309)
Q Consensus 216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~----------------------------~~~~L~pGD~v~IP~ 267 (309)
..+++.|++...+|+|...+++||++|++.+.+...| +.+.+.+||.+.||+
T Consensus 83 ~R~~i~p~gL~lP~y~na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~~~~~~~~d~hqkv~~lr~GDViaiPa 162 (493)
T PLN00212 83 IRRVIEPQGLLLPRYSNTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQSQSQKFRDEHQKIHQFRQGDVVALPA 162 (493)
T ss_pred EEEEecCCcccCccccCCCeEEEEEeCeEEEEEEeCCCcchhhhhcccccccccccccccccccccceEeccCCEEEECC
Confidence 5678999999999999999999999999999654211 236999999999999
Q ss_pred CCeEEEEEcCCceEE
Q 021654 268 GDVHRVKYYEETEFF 282 (309)
Q Consensus 268 g~~H~~~n~gd~~~~ 282 (309)
|++|++.|.++++++
T Consensus 163 G~~hw~yN~Gd~~~v 177 (493)
T PLN00212 163 GVAHWFYNDGDAPVV 177 (493)
T ss_pred CCeEEEEeCCCCcEE
Confidence 999999999998864
No 50
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=97.96 E-value=4.5e-05 Score=68.70 Aligned_cols=72 Identities=18% Similarity=0.318 Sum_probs=58.6
Q ss_pred EEEEEcCCCcC-CCeecCCceE-EEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEEcCcc
Q 021654 216 AIVRFKAGSVE-PAHHHTFGHD-LVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRW 289 (309)
Q Consensus 216 ~~~~l~pG~~~-p~H~H~~~e~-vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~~~~ 289 (309)
.++++.|++.. ....-+..|- +||++|++++. .+++++.|++|+++|+|||..|.++|...++.++.|....
T Consensus 64 yive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~--~~G~th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~rk~ 137 (264)
T COG3257 64 YIVELHPNGGSQRPEGDEGAETFLFVVSGEITVK--AEGKTHALREGGYAYLPPGSGWTLRNAQKEDSRFHWIRKR 137 (264)
T ss_pred heEEECCCCCCCCCCCCCcceEEEEEEeeeEEEE--EcCeEEEeccCCeEEeCCCCcceEeeccCCceEEEEEeec
Confidence 67888776644 3444444454 99999999995 4699999999999999999999999999999888887543
No 51
>PRK13503 transcriptional activator RhaS; Provisional
Probab=97.91 E-value=1.5e-05 Score=73.60 Aligned_cols=55 Identities=24% Similarity=0.353 Sum_probs=48.2
Q ss_pred CCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCC
Q 021654 222 AGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEE 278 (309)
Q Consensus 222 pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd 278 (309)
+....++|+|+..|++||++|.+++. ++++.+.+++||.+++||+.+|.+....+
T Consensus 24 ~~~~~~~H~H~~~ei~~v~~G~~~~~--i~~~~~~l~~g~~~~i~~~~~h~~~~~~~ 78 (278)
T PRK13503 24 PQAAFPEHHHDFHEIVIVEHGTGIHV--FNGQPYTLSGGTVCFVRDHDRHLYEHTDN 78 (278)
T ss_pred ccccccccccCceeEEEEecCceeeE--ecCCcccccCCcEEEECCCccchhhhccC
Confidence 34567899999999999999999995 45899999999999999999998876544
No 52
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=97.90 E-value=5.1e-05 Score=70.29 Aligned_cols=74 Identities=27% Similarity=0.308 Sum_probs=47.5
Q ss_pred eEEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeE---EEecCCcEEEECCCCeEEEEEcCCceEEEEEcCcccc
Q 021654 215 SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGER---FDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDM 291 (309)
Q Consensus 215 ~~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~---~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~~~~~i 291 (309)
..++++++|...|+|+|+....++|++|.+.. . +.. ..|++|.+.+.|+|..|--.+.+++.+.+.-++..-+
T Consensus 38 ~~~vkf~~g~~~pph~H~~~~~~~Vi~G~~~~--~--~~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~e~g~gp~ 113 (251)
T PF14499_consen 38 GMRVKFPAGFSSPPHIHNADYRGTVISGELHN--G--DPKAAAMWLPAGSYWFQPAGEPHITAAEGETNLLFIEIGEGPY 113 (251)
T ss_dssp EEEEEE-TT-EE--BEESS-EEEEEEESEEEE--T--TEE-----E-TTEEEEE-TT-EEEETTS-EE-EEEEE-S---E
T ss_pred eEEEEcCCCccCCCcceeeeEEEEEEEeEEEc--C--CCcccceecCCCceEeccCCCceeeeccCccEEEEEEeCCCcc
Confidence 47899999999999999999999999999877 3 443 3499999999999999988777766565544444444
Q ss_pred c
Q 021654 292 F 292 (309)
Q Consensus 292 ~ 292 (309)
.
T Consensus 114 ~ 114 (251)
T PF14499_consen 114 D 114 (251)
T ss_dssp E
T ss_pred c
Confidence 4
No 53
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.82 E-value=7.2e-05 Score=72.09 Aligned_cols=66 Identities=24% Similarity=0.386 Sum_probs=59.3
Q ss_pred EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEE
Q 021654 216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF 282 (309)
Q Consensus 216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~ 282 (309)
.+..+.||...+.|.|......+|++|+..++ .++++++.+++||++.+|++..|...|.++.+++
T Consensus 84 ~~q~l~pGe~~~~HRht~sAl~~vveG~G~~t-~V~g~~~~~~~gD~~~tP~w~wH~H~n~~d~~~~ 149 (335)
T TIGR02272 84 GLQLILPGEVAPSHRHTQSALRFIVEGKGAFT-AVDGERTTMHPGDFIITPSWTWHDHGNPGDEPMI 149 (335)
T ss_pred hhEEeCCCCCCCccccccceEEEEEEcCceEE-EECCEEEeeeCCCEEEeCCCeeEecccCCCCcEE
Confidence 56788999999999999999999999999644 3579999999999999999999999999888754
No 54
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=97.77 E-value=5.5e-05 Score=70.09 Aligned_cols=108 Identities=19% Similarity=0.310 Sum_probs=65.0
Q ss_pred cceeEEeecCCCCCeeec----CCceEEEeeeCCCe-----EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeE
Q 021654 184 CSICCLVKNRELNPVEMI----PGGSMKIIRESPTS-----AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGER 254 (309)
Q Consensus 184 ~~~~~v~~~~e~~~~~~~----pgg~~~il~~~~~~-----~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~ 254 (309)
+.-.......+.+++... +|.+++.|..++.. .++.+++|.....|+|...+..||++|++.+.....+..
T Consensus 133 ~~~ivwld~~dl~W~~~~~~~~~g~~~a~Lwgd~~~g~~~gll~kLPagf~g~i~~h~~~eraVvI~G~~~~~~~~~~~~ 212 (251)
T PF14499_consen 133 KDNIVWLDASDLEWISAPPGPPPGAQIAFLWGDPNTGQYTGLLLKLPAGFTGRIHTHASNERAVVISGELDYQSYGASNF 212 (251)
T ss_dssp GG-EEEEECCCS--EE-SSSTT-SEEEEEEEE-TTS-EE-EEEEE-SSEE--SEEE--S-EEEEEEEEEEEETTEEEETT
T ss_pred cccceEeccccCCccccCCCCCCcceEEEEecCCCCCceeeEEEEcCCCCcCceeccCCceEEEEEEeEEEEeecccCCC
Confidence 344555566666666655 67788888777653 567888888899999999999999999999943333466
Q ss_pred EEecCCcEEEECCCCeEEE-EEcCCceEEEEEcCcccc
Q 021654 255 FDLTVGDYLFTPAGDVHRV-KYYEETEFFIKWDGRWDM 291 (309)
Q Consensus 255 ~~L~pGD~v~IP~g~~H~~-~n~gd~~~~i~~~~~~~i 291 (309)
..|.+|.+++-|++..|+. ....++.++|..+|.+++
T Consensus 213 ~~L~~GSYf~s~~~~~H~~~~~e~~~vlyIRtdG~l~~ 250 (251)
T PF14499_consen 213 GTLDPGSYFGSPGHITHGIFITEDECVLYIRTDGKLSV 250 (251)
T ss_dssp EEEEE-TT-EE--E------EESS-EEEEEEESS-TTS
T ss_pred ccccCCcccccCCcccccccccCCCEEEEEEECCeeec
Confidence 8999999999999999999 555577888998888753
No 55
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=97.75 E-value=0.00016 Score=62.53 Aligned_cols=56 Identities=20% Similarity=0.170 Sum_probs=41.4
Q ss_pred CCCeecCCceEEEEEecEEEEEEeeCCeE---EEecCCcEEEECCCCeEEEEEcCCceE
Q 021654 226 EPAHHHTFGHDLVVLQGKKSVWNLTKGER---FDLTVGDYLFTPAGDVHRVKYYEETEF 281 (309)
Q Consensus 226 ~p~H~H~~~e~vyVlsG~l~v~i~~~~~~---~~L~pGD~v~IP~g~~H~~~n~gd~~~ 281 (309)
...|.|..+|.-|+++|++.|.+...++. ..+++||.+.+|+|+.|+|.-.....+
T Consensus 85 ~~EH~H~deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i 143 (157)
T PF03079_consen 85 FEEHTHEDEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGESPYI 143 (157)
T ss_dssp CS-EEESS-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEESTTSSE
T ss_pred heeEecChheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCCCCcE
Confidence 46899999999999999999987665554 468999999999999999987654333
No 56
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=97.75 E-value=0.00057 Score=56.67 Aligned_cols=85 Identities=14% Similarity=0.180 Sum_probs=67.8
Q ss_pred cCCceEEEe-eeCCCe---EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEc
Q 021654 201 IPGGSMKII-RESPTS---AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYY 276 (309)
Q Consensus 201 ~pgg~~~il-~~~~~~---~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~ 276 (309)
..|.+.|++ ..+..+ -..++.+|+....|.-...|-+|+++|++++....+++++.+.||..+.+.....|..++.
T Consensus 19 ~~w~SrRlll~~DgmGFS~h~T~i~aGtet~~~YknHlEAvyci~G~Gev~~~~~G~~~~i~pGt~YaLd~hD~H~lra~ 98 (126)
T PF06339_consen 19 ENWESRRLLLKDDGMGFSFHETTIYAGTETHIHYKNHLEAVYCIEGEGEVEDLDTGEVHPIKPGTMYALDKHDRHYLRAK 98 (126)
T ss_pred CCceEEEEEEccCCCCEEEEEEEEeCCCeeEEEecCceEEEEEEeceEEEEEccCCcEEEcCCCeEEecCCCccEEEEec
Confidence 345566655 444433 4568899999999998889999999999999755578999999999999999999999998
Q ss_pred CCceEEEEE
Q 021654 277 EETEFFIKW 285 (309)
Q Consensus 277 gd~~~~i~~ 285 (309)
++-.+.-+|
T Consensus 99 ~dm~~vCVF 107 (126)
T PF06339_consen 99 TDMRLVCVF 107 (126)
T ss_pred CCEEEEEEc
Confidence 855554333
No 57
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.51 E-value=0.00018 Score=67.68 Aligned_cols=79 Identities=25% Similarity=0.371 Sum_probs=67.3
Q ss_pred EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEEcCccccccch
Q 021654 216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDE 295 (309)
Q Consensus 216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~~~~~i~~~e 295 (309)
.+.-+.||...|.|.|.+.-+-||++|+..+++ ++++...+.+||++..|.+..|.--|.+++++. |...+||=+..
T Consensus 95 glQlilPGEvApsHrHsqsAlRFvveG~Ga~T~-VdGer~~M~~GDfilTP~w~wHdHgn~g~eP~i--WlDgLDiplv~ 171 (351)
T COG3435 95 GLQLILPGEVAPSHRHNQSALRFVVEGKGAYTV-VDGERTPMEAGDFILTPAWTWHDHGNEGTEPCI--WLDGLDIPLVN 171 (351)
T ss_pred hhheecCcccCCcccccccceEEEEeccceeEe-ecCceeeccCCCEEEccCceeccCCCCCCCceE--EEcccchHHHH
Confidence 456788999999999999999999999998874 689999999999999999999999999988874 66666654444
Q ss_pred hH
Q 021654 296 DL 297 (309)
Q Consensus 296 ~~ 297 (309)
.+
T Consensus 172 ~l 173 (351)
T COG3435 172 SL 173 (351)
T ss_pred hh
Confidence 33
No 58
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=97.46 E-value=0.00061 Score=57.16 Aligned_cols=69 Identities=23% Similarity=0.304 Sum_probs=40.6
Q ss_pred EEcCCCcCCCeecCCceE-EEEEecEEEEEEeeCC--eEEEecCC-cEEEECCCCeEEEEEcCCceEEEEEcC
Q 021654 219 RFKAGSVEPAHHHTFGHD-LVVLQGKKSVWNLTKG--ERFDLTVG-DYLFTPAGDVHRVKYYEETEFFIKWDG 287 (309)
Q Consensus 219 ~l~pG~~~p~H~H~~~e~-vyVlsG~l~v~i~~~~--~~~~L~pG-D~v~IP~g~~H~~~n~gd~~~~i~~~~ 287 (309)
..++|....+|.|...++ ++|++|+.++.+..+. +++.|... ..++|||++.|.+.+.++..+++.|..
T Consensus 39 ~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~~~~~L~~~~~~L~Ippg~w~~~~~~s~~svlLv~as 111 (131)
T PF05523_consen 39 NVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREEEEFILDEPNKGLYIPPGVWHGIKNFSEDSVLLVLAS 111 (131)
T ss_dssp S--SS--EEEEEESS--EEEEEEES-EEEEEE-SS-EEEEEE--TTEEEEE-TT-EEEEE---TT-EEEEEES
T ss_pred cCCCCCcccccccccccEEEEEEeCEEEEEEecCCCcEEEEECCCCeEEEECCchhhHhhccCCCcEEEEEcC
Confidence 345566679999976555 9999999999765332 45777655 499999999999999886666555554
No 59
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=97.45 E-value=0.00048 Score=52.00 Aligned_cols=58 Identities=22% Similarity=0.312 Sum_probs=42.7
Q ss_pred EEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcC
Q 021654 217 IVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYE 277 (309)
Q Consensus 217 ~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~g 277 (309)
+..-.||. .+.+... .|.+|||+|++++.. .+++++.+.|||++++|+|..-.+....
T Consensus 11 ~w~~~pg~-~~~~~~~-~E~~~vleG~v~it~-~~G~~~~~~aGD~~~~p~G~~~~w~v~~ 68 (74)
T PF05899_consen 11 VWECTPGK-FPWPYPE-DEFFYVLEGEVTITD-EDGETVTFKAGDAFFLPKGWTGTWEVRE 68 (74)
T ss_dssp EEEEECEE-EEEEESS-EEEEEEEEEEEEEEE-TTTEEEEEETTEEEEE-TTEEEEEEEEE
T ss_pred EEEECCce-eEeeCCC-CEEEEEEEeEEEEEE-CCCCEEEEcCCcEEEECCCCEEEEEECe
Confidence 34445543 3344433 788999999999974 3789999999999999999987776543
No 60
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=97.42 E-value=0.0035 Score=53.53 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=45.5
Q ss_pred EEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCC--eEEEecCCcEEEECCCCeEEEEEcCCceEEE
Q 021654 217 IVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKG--ERFDLTVGDYLFTPAGDVHRVKYYEETEFFI 283 (309)
Q Consensus 217 ~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~--~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i 283 (309)
.+.--|+.....|.-+..|++|-++|.+.+.+..++ +...+++||.+++|+++||+-.-..++.-+|
T Consensus 37 mvVGGPN~R~DyHine~eE~FyQ~kG~m~Lkv~e~g~~kdi~I~EGe~fLLP~~vpHsP~R~~~tiGLV 105 (151)
T PF06052_consen 37 MVVGGPNQRTDYHINETEEFFYQLKGDMCLKVVEDGKFKDIPIREGEMFLLPANVPHSPQRPADTIGLV 105 (151)
T ss_dssp EEEESSB--SSEEE-SS-EEEEEEES-EEEEEEETTEEEEEEE-TTEEEEE-TT--EEEEE-TT-EEEE
T ss_pred EEEcCCCCCCccccCCcceEEEEEeCcEEEEEEeCCceEEEEeCCCcEEecCCCCCCCCcCCCCcEEEE
Confidence 344567788899999999999999999999776555 4588999999999999999987777666543
No 61
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=97.42 E-value=0.00071 Score=59.92 Aligned_cols=67 Identities=21% Similarity=0.319 Sum_probs=41.9
Q ss_pred EEEEcCCCcC------CCeecCC-------ceEEEEEecEEEEEEeeCCe-------EEEecCCcEEEECCCCeEEEEEc
Q 021654 217 IVRFKAGSVE------PAHHHTF-------GHDLVVLQGKKSVWNLTKGE-------RFDLTVGDYLFTPAGDVHRVKYY 276 (309)
Q Consensus 217 ~~~l~pG~~~------p~H~H~~-------~e~vyVlsG~l~v~i~~~~~-------~~~L~pGD~v~IP~g~~H~~~n~ 276 (309)
+..+.||..- .=|.|+. .|..+|++|++.+.++..+. ...+.|||.++|||+-.|+..|+
T Consensus 54 iTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~yaH~tIN~ 133 (182)
T PF06560_consen 54 ITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPGYAHRTINT 133 (182)
T ss_dssp EEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT-EEEEEE-
T ss_pred eEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCCceEEEEEC
Confidence 4455665432 3477775 56689999999997764433 36789999999999999999999
Q ss_pred CCceEEE
Q 021654 277 EETEFFI 283 (309)
Q Consensus 277 gd~~~~i 283 (309)
+++++.+
T Consensus 134 g~~~L~~ 140 (182)
T PF06560_consen 134 GDEPLVF 140 (182)
T ss_dssp SSS-EEE
T ss_pred CCCcEEE
Confidence 9988753
No 62
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.37 E-value=0.00059 Score=65.86 Aligned_cols=64 Identities=16% Similarity=0.162 Sum_probs=55.8
Q ss_pred EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceE
Q 021654 216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEF 281 (309)
Q Consensus 216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~ 281 (309)
....+.+|.....|.|.....++|++|+++..+ +++++..++||.+.+|+...|+..|.++..+
T Consensus 253 ~~q~L~~G~~t~~~r~T~s~Vf~VieG~G~s~i--g~~~~~W~~gD~f~vPsW~~~~h~a~~da~L 316 (335)
T TIGR02272 253 FIQLLPKGFRTATYRSTDATVFCVVEGRGQVRI--GDAVFRFSPKDVFVVPSWHPVRFEASDDAVL 316 (335)
T ss_pred HHhccCCCCCCCCccccccEEEEEEeCeEEEEE--CCEEEEecCCCEEEECCCCcEecccCCCeEE
Confidence 346788999999999999999999999999954 6999999999999999999998888655433
No 63
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=97.33 E-value=0.00099 Score=57.33 Aligned_cols=69 Identities=17% Similarity=0.399 Sum_probs=49.6
Q ss_pred EEEEEcCCCcCCCeec-CCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCce-EEEEEcCcc
Q 021654 216 AIVRFKAGSVEPAHHH-TFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE-FFIKWDGRW 289 (309)
Q Consensus 216 ~~~~l~pG~~~p~H~H-~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~-~~i~~~~~~ 289 (309)
.++++... +.-|. ..+|..||++|++++. .+|+++..+|||.+|||.|..=.+..++... +++.+...|
T Consensus 80 Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~--~~G~~~~A~~GDvi~iPkGs~I~fst~~~a~~~Yv~yPa~W 150 (152)
T PF06249_consen 80 GFMELEKT---SFPWTLTYDEIKYVLEGTLEIS--IDGQTVTAKPGDVIFIPKGSTITFSTPDYARFFYVTYPANW 150 (152)
T ss_dssp EEEEEEEE---EEEEE-SSEEEEEEEEEEEEEE--ETTEEEEEETT-EEEE-TT-EEEEEEEEEEEEEEEEESTT-
T ss_pred EEEEEeCC---CccEEeecceEEEEEEeEEEEE--ECCEEEEEcCCcEEEECCCCEEEEecCCCEEEEEEECCCcc
Confidence 67788763 34455 4567799999999995 5699999999999999999998887766544 345555555
No 64
>PLN00212 glutelin; Provisional
Probab=97.17 E-value=0.0026 Score=64.38 Aligned_cols=64 Identities=19% Similarity=0.194 Sum_probs=52.2
Q ss_pred EEEEEcCCCcCCCeecCCceE-EEEEecEEEEEEee-C-CeEE--EecCCcEEEECCCCeEEEEEcCCc
Q 021654 216 AIVRFKAGSVEPAHHHTFGHD-LVVLQGKKSVWNLT-K-GERF--DLTVGDYLFTPAGDVHRVKYYEET 279 (309)
Q Consensus 216 ~~~~l~pG~~~p~H~H~~~e~-vyVlsG~l~v~i~~-~-~~~~--~L~pGD~v~IP~g~~H~~~n~gd~ 279 (309)
..+.+.+|+..++|||+.... +||++|++.+.+.. . ...+ .|.+||.++||.|.+|..++..+.
T Consensus 351 ~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~GdvfVVPqg~~v~~~A~~eg 419 (493)
T PLN00212 351 TRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQLLIIPQHYAVLKKAEREG 419 (493)
T ss_pred EEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCCEEEECCCCeEEEeecCCc
Confidence 568899999999999987666 99999999997642 2 2233 799999999999999987775443
No 65
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=96.95 E-value=0.0033 Score=53.79 Aligned_cols=70 Identities=20% Similarity=0.409 Sum_probs=53.6
Q ss_pred EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCce-EEEEEcCcc
Q 021654 216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE-FFIKWDGRW 289 (309)
Q Consensus 216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~-~~i~~~~~~ 289 (309)
.+.++++ +..||- -..+|.-|||+|++.+. .+|++...+|||.+|||.|..-.+.-++... +++.|...|
T Consensus 103 G~m~~~~-~tf~wt-l~yDe~d~VlEGrL~V~--~~g~tv~a~aGDvifiPKgssIefst~gea~flyvtyPanW 173 (176)
T COG4766 103 GLMEMKN-TTFPWT-LNYDEIDYVLEGRLHVR--IDGRTVIAGAGDVIFIPKGSSIEFSTTGEAKFLYVTYPANW 173 (176)
T ss_pred ceeeecc-ccCcce-ecccceeEEEeeeEEEE--EcCCeEecCCCcEEEecCCCeEEEeccceEEEEEEEccccc
Confidence 4455555 444443 45778899999999995 5699999999999999999999888777644 456666656
No 66
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.91 E-value=0.0028 Score=59.87 Aligned_cols=68 Identities=25% Similarity=0.323 Sum_probs=58.7
Q ss_pred EEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEEc
Q 021654 217 IVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD 286 (309)
Q Consensus 217 ~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~ 286 (309)
...++||-....|+|...-.+.|.+|+.... ++++++...+||++.+|+...|+..|.++..+++++.
T Consensus 265 mqlL~~Gf~~~~~r~t~s~iy~V~eGsg~~~--Ig~~rf~~~~~D~fvVPsW~~~~~~~gs~da~LFsfs 332 (351)
T COG3435 265 MQLLPPGFHGKAHRHTDSTIYHVVEGSGYTI--IGGERFDWSAGDIFVVPSWAWHEHVNGSEDAVLFSFS 332 (351)
T ss_pred HHhcCCcccCCceeccCCEEEEEEecceeEE--ECCEEeeccCCCEEEccCcceeecccCCcceEEEecC
Confidence 4567889999999999999999999999994 5699999999999999999999999976666655443
No 67
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=96.87 E-value=0.0047 Score=53.82 Aligned_cols=56 Identities=20% Similarity=0.179 Sum_probs=45.9
Q ss_pred CCCeecCCceEEEEEecEEEEEEeeCC-eE--EEecCCcEEEECCCCeEEEEEcCCceE
Q 021654 226 EPAHHHTFGHDLVVLQGKKSVWNLTKG-ER--FDLTVGDYLFTPAGDVHRVKYYEETEF 281 (309)
Q Consensus 226 ~p~H~H~~~e~vyVlsG~l~v~i~~~~-~~--~~L~pGD~v~IP~g~~H~~~n~gd~~~ 281 (309)
...|.|...|.-|++.|.+.|.+...+ .. ..+.+||.+.+|||+.|++.-+.+-.+
T Consensus 88 ~~EH~H~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f 146 (181)
T COG1791 88 LQEHLHTDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPNF 146 (181)
T ss_pred HHHhccCCceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCcE
Confidence 357999999999999999999776444 33 567899999999999999988765443
No 68
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=96.78 E-value=0.013 Score=51.54 Aligned_cols=78 Identities=15% Similarity=0.142 Sum_probs=49.5
Q ss_pred eEEEeeeCCCe--EEEEEcCCCcCCCeecCCce-EEEEEecEEEEEEe--eCC---------eEEEecCCcEEEECCCCe
Q 021654 205 SMKIIRESPTS--AIVRFKAGSVEPAHHHTFGH-DLVVLQGKKSVWNL--TKG---------ERFDLTVGDYLFTPAGDV 270 (309)
Q Consensus 205 ~~~il~~~~~~--~~~~l~pG~~~p~H~H~~~e-~vyVlsG~l~v~i~--~~~---------~~~~L~pGD~v~IP~g~~ 270 (309)
.+.++..++.. .++.+.||..+|.|-|.... .+.|++|+++-... .++ ....+.+|.....+++-.
T Consensus 65 ~r~ll~~~~~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i 144 (175)
T PF05995_consen 65 TRNLLYRDERFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGI 144 (175)
T ss_dssp EEEEEEGGCT-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBE
T ss_pred eEEEEecCCCeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCe
Confidence 34444444433 67899999999999998655 58899999886432 222 335577888888899999
Q ss_pred EEEEEcC-CceEE
Q 021654 271 HRVKYYE-ETEFF 282 (309)
Q Consensus 271 H~~~n~g-d~~~~ 282 (309)
|++.|.+ +.+.+
T Consensus 145 H~v~n~s~~~~av 157 (175)
T PF05995_consen 145 HRVENPSGDEPAV 157 (175)
T ss_dssp EEEEES-SSS-EE
T ss_pred EEeccCCCCCCEE
Confidence 9999987 55543
No 69
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=96.66 E-value=0.0042 Score=56.18 Aligned_cols=65 Identities=26% Similarity=0.331 Sum_probs=57.1
Q ss_pred EEEEEcCCCcCCC-eecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEE
Q 021654 216 AIVRFKAGSVEPA-HHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF 282 (309)
Q Consensus 216 ~~~~l~pG~~~p~-H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~ 282 (309)
.+++|.||..+|. ..|-.++-+|||+|+..+.+ ++..+.+++||++|+-+-.|....+.+...+.
T Consensus 185 ~ivsFePGa~ip~aEtHvmEHGlyvLeGk~vYrL--n~dwv~V~aGD~mwm~A~cpQacyagG~g~fr 250 (264)
T COG3257 185 HIVSFEPGASIPYAETHVMEHGLYVLEGKGVYRL--NNNWVPVEAGDYIWMGAYCPQACYAGGRGAFR 250 (264)
T ss_pred EEEEecCCcccchhhhhhhhcceEEEecceEEee--cCceEEeecccEEEeeccChhhhccCCCCceE
Confidence 6889999999985 67888888999999999954 58999999999999999999998888876664
No 70
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=96.58 E-value=0.015 Score=51.82 Aligned_cols=93 Identities=23% Similarity=0.208 Sum_probs=72.1
Q ss_pred CCCeeecCCceEEEeee--CCC--eEEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCe
Q 021654 195 LNPVEMIPGGSMKIIRE--SPT--SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDV 270 (309)
Q Consensus 195 ~~~~~~~pgg~~~il~~--~~~--~~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~ 270 (309)
+......+|+.+.-++- ++. ..++.+.+|..+|.|.|-..|.+.|++|...-. .-.+.+||+..-+.++.
T Consensus 106 ~~~~W~~~G~rv~~v~l~~dds~~V~llki~~g~s~P~HtH~G~E~t~vl~G~~sde------~G~y~vgD~~~~d~~v~ 179 (216)
T COG3806 106 GPWRWLGPGGRVEPVRLPTDDSRRVALLKIEPGRSFPDHTHVGIERTAVLEGAFSDE------NGEYLVGDFTLADGTVQ 179 (216)
T ss_pred cceeeecCCcceeecccCCCCCceeEEEEeccCcccccccccceEEEEEEeeccccC------CCccccCceeecCCccc
Confidence 33455678887764432 222 377889999999999999999999999987752 22778999999999999
Q ss_pred EE--EEEcCCceEEEEEcCcccccc
Q 021654 271 HR--VKYYEETEFFIKWDGRWDMFF 293 (309)
Q Consensus 271 H~--~~n~gd~~~~i~~~~~~~i~~ 293 (309)
|+ ..-.+++.+++.|++...++.
T Consensus 180 H~piv~~~~eClcl~al~~~~~l~g 204 (216)
T COG3806 180 HSPIVLPPGECLCLAALDGPMMLYG 204 (216)
T ss_pred cccccCCCCCceEEEEcCCCeEEEh
Confidence 98 556678888899998876654
No 71
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=96.42 E-value=0.0057 Score=53.02 Aligned_cols=54 Identities=24% Similarity=0.220 Sum_probs=45.0
Q ss_pred cCCCeecCCceEEEEEecEEEEEEeeCCe---EEEecCCcEEEECCCCeEEEEEcCC
Q 021654 225 VEPAHHHTFGHDLVVLQGKKSVWNLTKGE---RFDLTVGDYLFTPAGDVHRVKYYEE 278 (309)
Q Consensus 225 ~~p~H~H~~~e~vyVlsG~l~v~i~~~~~---~~~L~pGD~v~IP~g~~H~~~n~gd 278 (309)
....|.|..+|.-|+++|+..+.+...++ +..+..||.+++|+|+-|||.-+.+
T Consensus 85 FfEEhlh~deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~~ 141 (179)
T KOG2107|consen 85 FFEEHLHEDEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTPS 141 (179)
T ss_pred HHHHhcCchhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCch
Confidence 34689999999999999999997654343 3678999999999999999987654
No 72
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=96.38 E-value=0.017 Score=48.79 Aligned_cols=83 Identities=27% Similarity=0.336 Sum_probs=55.6
Q ss_pred CCcCCC-eecCCceE-EEEEecEEEEEEe-eCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEE--cCc--cccccc-
Q 021654 223 GSVEPA-HHHTFGHD-LVVLQGKKSVWNL-TKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKW--DGR--WDMFFD- 294 (309)
Q Consensus 223 G~~~p~-H~H~~~e~-vyVlsG~l~v~i~-~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~--~~~--~~i~~~- 294 (309)
|+.++. |+|...++ +.|+.|+..+.+. -++....+..||++.||+|+-|.-.. ....|.++- .+. |+|---
T Consensus 52 g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~el~v~~GDvlliPAGvGH~rl~-sS~DF~VvGaYp~G~q~diqtg~ 130 (163)
T COG4297 52 GGVFNYHHYHSGAHEVLGVLRGQAGLQIGGADGQELEVGEGDVLLIPAGVGHCRLH-SSADFQVVGAYPPGQQADIQTGA 130 (163)
T ss_pred ccccccccccCCcceEEEEecceeEEEecCCCCceeeecCCCEEEEecCccccccc-CCCCeEEEcccCCcccccccCCC
Confidence 344454 56888777 7899999999764 34678999999999999999996433 334444332 222 333222
Q ss_pred -hhHHHHHHHHhh
Q 021654 295 -EDLEAAKKAVEK 306 (309)
Q Consensus 295 -e~~~~~~~~~~~ 306 (309)
.|+..|+++|..
T Consensus 131 ~t~~aear~~I~~ 143 (163)
T COG4297 131 PTDLAEARARIKS 143 (163)
T ss_pred CccHHHHHHHHHc
Confidence 346788888753
No 73
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=96.30 E-value=0.01 Score=55.34 Aligned_cols=48 Identities=19% Similarity=0.281 Sum_probs=39.6
Q ss_pred eecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCC
Q 021654 229 HHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEE 278 (309)
Q Consensus 229 H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd 278 (309)
|.+....+.++++|++.++ ++++.+.+++||.+++||+++|.+....+
T Consensus 45 ~~~~~~~i~~~~~G~~~~~--~~~~~~~~~~g~~i~i~p~~~h~~~~~~~ 92 (290)
T PRK10572 45 LGMKGYILNLTIRGQGVIF--NGGRAFVCRPGDLLLFPPGEIHHYGRHPD 92 (290)
T ss_pred CCccceEEEEEEeccEEEe--cCCeeEecCCCCEEEECCCCceeeccCCC
Confidence 3344556689999999995 56999999999999999999999866544
No 74
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=95.99 E-value=0.08 Score=40.98 Aligned_cols=55 Identities=24% Similarity=0.311 Sum_probs=41.5
Q ss_pred CeecCCceE--EEEEecEEEEEEeeC-----CeEEEecCCcEEEECCCCeEEEEEcCC-ceEE
Q 021654 228 AHHHTFGHD--LVVLQGKKSVWNLTK-----GERFDLTVGDYLFTPAGDVHRVKYYEE-TEFF 282 (309)
Q Consensus 228 ~H~H~~~e~--vyVlsG~l~v~i~~~-----~~~~~L~pGD~v~IP~g~~H~~~n~gd-~~~~ 282 (309)
.|.=..+.+ +.|++|++.+....+ .+...+.+|+..+|+|...|++...++ ..++
T Consensus 18 ~H~TK~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~D~~f~ 80 (82)
T PF09313_consen 18 RHNTKAGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSDDLRFQ 80 (82)
T ss_dssp SBCCSTTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESSTT-EEE
T ss_pred hcCCCCCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCCCEEEE
Confidence 444445555 889999999976544 477899999999999999999998886 6554
No 75
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=95.63 E-value=0.05 Score=44.83 Aligned_cols=59 Identities=22% Similarity=0.223 Sum_probs=45.0
Q ss_pred EEEEEcCCCcCCCeec-CCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCC
Q 021654 216 AIVRFKAGSVEPAHHH-TFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEE 278 (309)
Q Consensus 216 ~~~~l~pG~~~p~H~H-~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd 278 (309)
.+..-.||. ++++ +..|+.++|+|..+++ ..+++...+++||++++|+|..=.++-.+.
T Consensus 48 GiWe~TpG~---~r~~y~~~E~chil~G~v~~T-~d~Ge~v~~~aGD~~~~~~G~~g~W~V~Et 107 (116)
T COG3450 48 GIWECTPGK---FRVTYDEDEFCHILEGRVEVT-PDGGEPVEVRAGDSFVFPAGFKGTWEVLET 107 (116)
T ss_pred eEEEecCcc---ceEEcccceEEEEEeeEEEEE-CCCCeEEEEcCCCEEEECCCCeEEEEEeee
Confidence 344445554 3443 3467799999999997 457899999999999999999987776553
No 76
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=95.51 E-value=0.081 Score=42.93 Aligned_cols=58 Identities=28% Similarity=0.248 Sum_probs=46.2
Q ss_pred CCcCCCeecCCceE-EEEEecEEEEEEeeCCeEEEecCCcEEEECC--CCeEEEEEcCC-ceE
Q 021654 223 GSVEPAHHHTFGHD-LVVLQGKKSVWNLTKGERFDLTVGDYLFTPA--GDVHRVKYYEE-TEF 281 (309)
Q Consensus 223 G~~~p~H~H~~~e~-vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~--g~~H~~~n~gd-~~~ 281 (309)
+...++|.|...|. .||++|+++-. ..-+....|.+|+.-|+-+ |+.|+-.|..+ .++
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G~~~H~-Ds~G~~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~ 100 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEGELRHR-DSLGNRGVLRAGDVQWMTAGSGIVHSERNASDGGPL 100 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEESEEEEE-ETTSEEEEEETTEEEEEE-TTTEEEEEEE-TSSS-E
T ss_pred CCCCCCcCCCCceEEEEEecCEEEEE-CCCCCeeEeCCCeEEEEeCCCCceEEEecCCCCCeE
Confidence 56779999999888 89999999975 5557788999999999886 57899999887 444
No 77
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=95.51 E-value=0.047 Score=48.52 Aligned_cols=62 Identities=26% Similarity=0.388 Sum_probs=43.0
Q ss_pred EEEEEcCCCcCCCeecCCceE-----------------------------EEEEecEEEEEEeeCCeEEEecCCcEEEEC
Q 021654 216 AIVRFKAGSVEPAHHHTFGHD-----------------------------LVVLQGKKSVWNLTKGERFDLTVGDYLFTP 266 (309)
Q Consensus 216 ~~~~l~pG~~~p~H~H~~~e~-----------------------------vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP 266 (309)
.++.+.+|+..|.|.|....+ .+.+.|...- ...+....|.||.++.+|
T Consensus 89 KiM~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~--~~ag~~lkL~PGesitL~ 166 (225)
T COG3822 89 KIMHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQT--HTAGSQLKLSPGESITLP 166 (225)
T ss_pred eeEEeccCCcCcccccccchhhhhhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEE--eccceeEEECCCCcEecC
Confidence 567788899999999983322 1122222221 122455789999999999
Q ss_pred CCCeEEEEEcCCc
Q 021654 267 AGDVHRVKYYEET 279 (309)
Q Consensus 267 ~g~~H~~~n~gd~ 279 (309)
||+-|+|++.+..
T Consensus 167 Pg~~HsFwae~g~ 179 (225)
T COG3822 167 PGLYHSFWAEEGG 179 (225)
T ss_pred CCceeeeeecCCc
Confidence 9999999997654
No 78
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=95.42 E-value=0.11 Score=49.88 Aligned_cols=58 Identities=21% Similarity=0.182 Sum_probs=41.6
Q ss_pred EcCCC--cCCCeecCCceEEEEEecEEEEEEee---------------------CCeEEEecCCcEEEECCCCeEEEEEc
Q 021654 220 FKAGS--VEPAHHHTFGHDLVVLQGKKSVWNLT---------------------KGERFDLTVGDYLFTPAGDVHRVKYY 276 (309)
Q Consensus 220 l~pG~--~~p~H~H~~~e~vyVlsG~l~v~i~~---------------------~~~~~~L~pGD~v~IP~g~~H~~~n~ 276 (309)
+.|++ ..++|+-+.+-+++=+.|+-+.++.. ....++|.|||.+|+|+|.+|...+.
T Consensus 120 ~tp~g~~g~~~H~D~~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H~~~~~ 199 (319)
T PF08007_consen 120 LTPPGSQGFGPHYDDHDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWWHQAVTT 199 (319)
T ss_dssp EETSSBEESECEE-SSEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-EEEEEES
T ss_pred ecCCCCCCccCEECCcccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCccCCCCCC
Confidence 45555 78899988888888899999887642 12369999999999999999999998
Q ss_pred C
Q 021654 277 E 277 (309)
Q Consensus 277 g 277 (309)
+
T Consensus 200 ~ 200 (319)
T PF08007_consen 200 D 200 (319)
T ss_dssp S
T ss_pred C
Confidence 8
No 79
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=95.30 E-value=0.069 Score=48.61 Aligned_cols=64 Identities=20% Similarity=0.260 Sum_probs=38.1
Q ss_pred EEEEEcCCCcCCCeecCCceE-EEEEe-cEEEEEEe-----------------e--------CCeEEEecCCcEEEECCC
Q 021654 216 AIVRFKAGSVEPAHHHTFGHD-LVVLQ-GKKSVWNL-----------------T--------KGERFDLTVGDYLFTPAG 268 (309)
Q Consensus 216 ~~~~l~pG~~~p~H~H~~~e~-vyVls-G~l~v~i~-----------------~--------~~~~~~L~pGD~v~IP~g 268 (309)
.++.+.+|+..|.|.|..-.+ +...- |.+.+++. . .+....|.||+++.++||
T Consensus 90 Kim~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~Pg 169 (225)
T PF07385_consen 90 KIMIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESITLPPG 169 (225)
T ss_dssp EEEEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-TT
T ss_pred hheeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEeeCCC
Confidence 456677888888888876555 44443 34433331 1 244578899999999999
Q ss_pred CeEEEEEcCCc
Q 021654 269 DVHRVKYYEET 279 (309)
Q Consensus 269 ~~H~~~n~gd~ 279 (309)
.-|+|+..+..
T Consensus 170 ~yH~Fw~e~g~ 180 (225)
T PF07385_consen 170 IYHWFWGEGGD 180 (225)
T ss_dssp EEEEEEE-TTS
T ss_pred CeeeEEecCCC
Confidence 99999998766
No 80
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=94.98 E-value=0.52 Score=39.76 Aligned_cols=129 Identities=14% Similarity=0.079 Sum_probs=79.2
Q ss_pred CCcEEEEEe---CcccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhc
Q 021654 11 HPLKIIAGA---DSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFAN 87 (309)
Q Consensus 11 ~~mki~i~~---D~~g~~lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaN 87 (309)
++.||++++ |.-...+ ..+...|+.+||+|+|+|.+-.++ .+.+.+.+ ...+.-.+-|-.+..+..+
T Consensus 2 ~~~~vl~~~~~gD~H~lG~-~iv~~~lr~~G~eVi~LG~~vp~e---~i~~~a~~----~~~d~V~lS~~~~~~~~~~-- 71 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGN-KILDRALTEAGFEVINLGVMTSQE---EFIDAAIE----TDADAILVSSLYGHGEIDC-- 71 (137)
T ss_pred CCCEEEEEeCCCChhHHHH-HHHHHHHHHCCCEEEECCCCCCHH---HHHHHHHH----cCCCEEEEcCccccCHHHH--
Confidence 356787774 4444444 577788999999999999864432 33334443 3455544444444333222
Q ss_pred CCCceEEEEeCCHHHHHHhHhh--cCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhhhhhhhccc
Q 021654 88 KNPGVFATTCLTPADALNTRSI--NNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCFFDKSMT 164 (309)
Q Consensus 88 K~~giraa~~~~~~~A~~~r~h--N~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~~fl~~sl~ 164 (309)
.....+-|+. .+..|++=|.-++++....++.+.+.+-.|+.-||.+..- ++|.+|+++.++
T Consensus 72 ------------~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~---~~i~~~l~~~~~ 135 (137)
T PRK02261 72 ------------RGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDP---EEAIDDLKKDLN 135 (137)
T ss_pred ------------HHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcCCCH---HHHHHHHHHHhc
Confidence 1222333343 2443444444467888888888888888898888877743 678888877553
No 81
>PF12852 Cupin_6: Cupin
Probab=94.84 E-value=0.11 Score=45.29 Aligned_cols=45 Identities=27% Similarity=0.331 Sum_probs=36.8
Q ss_pred ceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCC
Q 021654 234 GHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEE 278 (309)
Q Consensus 234 ~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd 278 (309)
..+.+|++|+..+.+..++....|.+||.+++|.|.+|.+....+
T Consensus 36 ~~fh~V~~G~~~l~~~~~~~~~~L~~GDivllp~g~~H~l~~~~~ 80 (186)
T PF12852_consen 36 ASFHVVLRGSCWLRVPGGGEPIRLEAGDIVLLPRGTAHVLSSDPD 80 (186)
T ss_pred eEEEEEECCeEEEEEcCCCCeEEecCCCEEEEcCCCCeEeCCCCC
Confidence 556899999999965422588999999999999999999965444
No 82
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=94.62 E-value=0.24 Score=44.39 Aligned_cols=56 Identities=29% Similarity=0.352 Sum_probs=38.6
Q ss_pred cCCCcCCCeecCCceEEEEEecEEEEEEe-----------e---------------------------CCeEEEecCCcE
Q 021654 221 KAGSVEPAHHHTFGHDLVVLQGKKSVWNL-----------T---------------------------KGERFDLTVGDY 262 (309)
Q Consensus 221 ~pG~~~p~H~H~~~e~vyVlsG~l~v~i~-----------~---------------------------~~~~~~L~pGD~ 262 (309)
.+|+.+++|.....-++.++.|+-++.+. . ..-+.+|+|||.
T Consensus 139 ~~gs~t~lH~D~~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~~l~pGD~ 218 (251)
T PF13621_consen 139 PPGSFTPLHYDPSHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYEVVLEPGDV 218 (251)
T ss_dssp -TTEEEEEEE-SSEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEEEEEETT-E
T ss_pred CCCceeeeeECchhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeEEEECCCeE
Confidence 44667777777766667778888777652 0 124588999999
Q ss_pred EEECCCCeEEEEEc
Q 021654 263 LFTPAGDVHRVKYY 276 (309)
Q Consensus 263 v~IP~g~~H~~~n~ 276 (309)
+|||+|-.|.+.|.
T Consensus 219 LfiP~gWwH~V~~~ 232 (251)
T PF13621_consen 219 LFIPPGWWHQVENL 232 (251)
T ss_dssp EEE-TT-EEEEEES
T ss_pred EEECCCCeEEEEEc
Confidence 99999999999999
No 83
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=94.55 E-value=0.11 Score=45.68 Aligned_cols=66 Identities=15% Similarity=0.118 Sum_probs=48.3
Q ss_pred CCCcCCCeecCCc--eEEEEEecEEEEEEe---eCC------eEEEecCC--cEEEECCCCeEEEEEcCCceEEEEEcC
Q 021654 222 AGSVEPAHHHTFG--HDLVVLQGKKSVWNL---TKG------ERFDLTVG--DYLFTPAGDVHRVKYYEETEFFIKWDG 287 (309)
Q Consensus 222 pG~~~p~H~H~~~--e~vyVlsG~l~v~i~---~~~------~~~~L~pG--D~v~IP~g~~H~~~n~gd~~~~i~~~~ 287 (309)
+|....+|+|... +.+.|++|++..... .+. ....|.+. ..+|||+|..|.+.+.++...++.+..
T Consensus 54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~y~~~ 132 (173)
T COG1898 54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVVYKVT 132 (173)
T ss_pred CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCceEEEEEec
Confidence 7777889998655 458999999987442 111 12455554 799999999999999998876555443
No 84
>COG1741 Pirin-related protein [General function prediction only]
Probab=94.37 E-value=0.09 Score=49.60 Aligned_cols=57 Identities=25% Similarity=0.197 Sum_probs=49.3
Q ss_pred EEcCCCcCCCeecCCceE-EEEEecEEEEEEeeCCeEEEecCCcEEEECC--CCeEEEEEc
Q 021654 219 RFKAGSVEPAHHHTFGHD-LVVLQGKKSVWNLTKGERFDLTVGDYLFTPA--GDVHRVKYY 276 (309)
Q Consensus 219 ~l~pG~~~p~H~H~~~e~-vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~--g~~H~~~n~ 276 (309)
.+.||...++|.|...|. .||++|+++-+ +..+..-.+.|||.-|+-+ |+.|+-.|.
T Consensus 50 ~~~pG~~f~pHPHrg~etvTyvl~G~i~Hr-DS~Gn~~~i~pGdvqwMTAG~GI~HSE~~~ 109 (276)
T COG1741 50 VLAPGRGFPPHPHRGLETVTYVLDGEIEHR-DSLGNKGVIRPGDVQWMTAGSGIVHSEMNP 109 (276)
T ss_pred cccCCCcCCCCCCCCcEEEEEEEccEEEEe-ecCCceeeecccceeEEcCCCceeecccCC
Confidence 477899999999999998 89999999985 4456788999999999987 578998886
No 85
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=94.36 E-value=0.16 Score=47.40 Aligned_cols=47 Identities=15% Similarity=0.120 Sum_probs=38.8
Q ss_pred ceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEE
Q 021654 234 GHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF 282 (309)
Q Consensus 234 ~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~ 282 (309)
...+++++|.+.+. .+++.+.+.|||.+++|++.+|.+...++...+
T Consensus 72 ~~l~~~~~G~~~~~--~~g~~~~l~~G~~~l~~~~~p~~~~~~~~~~~~ 118 (302)
T PRK09685 72 FFTVFQLSGHAIIE--QDDRQVQLAAGDITLIDASRPCSIYPQGLSEQI 118 (302)
T ss_pred EEEEEEecceEEEE--ECCeEEEEcCCCEEEEECCCCcEeecCCCceeE
Confidence 34578899999995 569999999999999999999998776655443
No 86
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=93.96 E-value=0.68 Score=39.09 Aligned_cols=113 Identities=12% Similarity=0.078 Sum_probs=69.2
Q ss_pred HHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCCCceEEEEeCCHHHHHHh
Q 021654 27 KDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNT 106 (309)
Q Consensus 27 k~~l~~~l~~~g~ev~d~G~~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~~giraa~~~~~~~A~~~ 106 (309)
|+.+...|++.||+|+|+|.+--+ .++.+++.+ ...+ ++..++=+|-.+.. + .....+.
T Consensus 18 k~iv~~~l~~~GfeVi~LG~~v~~---e~~v~aa~~----~~ad--iVglS~l~~~~~~~--~----------~~~~~~l 76 (134)
T TIGR01501 18 NKILDHAFTNAGFNVVNLGVLSPQ---EEFIKAAIE----TKAD--AILVSSLYGHGEID--C----------KGLRQKC 76 (134)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCH---HHHHHHHHH----cCCC--EEEEecccccCHHH--H----------HHHHHHH
Confidence 588889999999999999975433 344444444 2222 22222212222210 0 1233444
Q ss_pred HhhcCceE-eEeccc-cCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhhhhhhhcc
Q 021654 107 RSINNCNV-LAVSGM-STSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCFFDKSM 163 (309)
Q Consensus 107 r~hN~aNv-l~lg~~-~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~~fl~~sl 163 (309)
|+.+-.++ +.+|+. +++++...+..+.+.+..|+.-|+++.. +++|.+|+++.|
T Consensus 77 ~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~---~~~iv~~l~~~~ 132 (134)
T TIGR01501 77 DEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGTP---PEVVIADLKKDL 132 (134)
T ss_pred HHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCCC---HHHHHHHHHHHh
Confidence 55443344 446665 6788888777778888889888888773 377888888765
No 87
>PF14272 Gly_rich_SFCGS: Glycine-rich SFCGS
Probab=93.85 E-value=0.14 Score=40.85 Aligned_cols=77 Identities=21% Similarity=0.320 Sum_probs=54.3
Q ss_pred HHHHHHhhcCCCCCCCceEEEEecCc-hhhhhhhcCCCceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHH
Q 021654 54 AEVGRRVSSSDSSDTTTRGLVACGTG-VGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILD 132 (309)
Q Consensus 54 ~~va~~v~~~~~~~~~~~gi~~CgtG-~G~~iaaNK~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~ 132 (309)
.++..-+.+ ..+|+||-+|||| .|.-+|.||+ |--|-.---.-++-.+.-.+.+|||-+|-. =-+|+.+.+++
T Consensus 36 mklGdvM~~----e~Ad~GiSFCGSGGAGAitA~tKy-gy~~~~gmRSv~~GvTAi~~G~~VlGFGFm-D~EeLG~rlve 109 (115)
T PF14272_consen 36 MKLGDVMKK----ENADFGISFCGSGGAGAITAQTKY-GYKARHGMRSVDEGVTAINEGKKVLGFGFM-DKEELGRRLVE 109 (115)
T ss_pred chHHHHHHh----hCCCcceEEecCCCccceeecccc-CCchhcCccchhhhHHHHHcCCeEEeeccc-cHHHHHHHHHH
Confidence 467777776 7899999999996 5666677776 433333333345666667788999888743 23667788999
Q ss_pred HHHc
Q 021654 133 TWLK 136 (309)
Q Consensus 133 ~~l~ 136 (309)
+|..
T Consensus 110 ~~~k 113 (115)
T PF14272_consen 110 AYIK 113 (115)
T ss_pred HHHh
Confidence 9975
No 88
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=93.28 E-value=0.64 Score=37.07 Aligned_cols=84 Identities=23% Similarity=0.257 Sum_probs=51.9
Q ss_pred EEEcCCCcCCCe-ecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEc-CCceEE----------EEE
Q 021654 218 VRFKAGSVEPAH-HHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYY-EETEFF----------IKW 285 (309)
Q Consensus 218 ~~l~pG~~~p~H-~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~-gd~~~~----------i~~ 285 (309)
++++||+..... ...+.-++||++|.+++ + ++...+.+|+.+++..+..=.+.+. .+..++ +.+
T Consensus 4 i~l~~g~~~~~~~~~~~~~~iyv~~G~~~v--~--~~~~~~~~~~~~~l~~g~~i~~~a~~~~a~~lll~GePl~Epi~~ 79 (104)
T PF05726_consen 4 IKLEPGASFTLPLPPGHNAFIYVLEGSVEV--G--GEEDPLEAGQLVVLEDGDEIELTAGEEGARFLLLGGEPLNEPIVQ 79 (104)
T ss_dssp EEE-TT-EEEEEEETT-EEEEEEEESEEEE--T--TTTEEEETTEEEEE-SECEEEEEESSSSEEEEEEEE----S--EE
T ss_pred EEECCCCEEEeecCCCCEEEEEEEECcEEE--C--CCcceECCCcEEEECCCceEEEEECCCCcEEEEEEccCCCCCEEE
Confidence 456666665333 22345569999999988 4 4447899999999998877778887 455543 233
Q ss_pred cCccccccchhHHHHHHHHh
Q 021654 286 DGRWDMFFDEDLEAAKKAVE 305 (309)
Q Consensus 286 ~~~~~i~~~e~~~~~~~~~~ 305 (309)
-|+...--.+++..|.+.-+
T Consensus 80 ~GpFVmnt~eeI~qA~~dy~ 99 (104)
T PF05726_consen 80 YGPFVMNTREEIEQAFEDYQ 99 (104)
T ss_dssp ETTEEESSHHHHHHHHHHHH
T ss_pred ECCcccCCHHHHHHHHHHHH
Confidence 44444555566666665543
No 89
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=92.98 E-value=0.23 Score=36.37 Aligned_cols=55 Identities=18% Similarity=0.182 Sum_probs=40.4
Q ss_pred EEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEE
Q 021654 218 VRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRV 273 (309)
Q Consensus 218 ~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~ 273 (309)
+++.||....++... ...+.|.+|.+-++...+.+.+.|.|||.+.++++..=-+
T Consensus 2 ~~L~~g~~~~lr~~~-~~~l~v~~G~vWlT~~g~~~D~~L~~G~~l~l~~g~~vvl 56 (63)
T PF11142_consen 2 FELAPGETLSLRAAA-GQRLRVESGRVWLTREGDPDDYWLQAGDSLRLRRGGRVVL 56 (63)
T ss_pred EEeCCCceEEeEcCC-CcEEEEccccEEEECCCCCCCEEECCCCEEEeCCCCEEEE
Confidence 456677766666554 4448999999988755445679999999999998875433
No 90
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=92.85 E-value=0.57 Score=41.34 Aligned_cols=62 Identities=21% Similarity=0.224 Sum_probs=45.6
Q ss_pred cCCCcCCCeec---CCceEEEEEecEEEEEEeeC-------C--eEEEecC--CcEEEECCCCeEEEEEcCCceEE
Q 021654 221 KAGSVEPAHHH---TFGHDLVVLQGKKSVWNLTK-------G--ERFDLTV--GDYLFTPAGDVHRVKYYEETEFF 282 (309)
Q Consensus 221 ~pG~~~p~H~H---~~~e~vyVlsG~l~v~i~~~-------~--~~~~L~p--GD~v~IP~g~~H~~~n~gd~~~~ 282 (309)
.+|....+|.| .+...+.|++|++...+..- + ....|.+ +..+|||+|..|.+.+.++...+
T Consensus 52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~a~v 127 (176)
T TIGR01221 52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDEAEF 127 (176)
T ss_pred cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCCeEE
Confidence 45777788887 36777999999999744211 1 1466776 55999999999999998865443
No 91
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=92.85 E-value=0.14 Score=40.52 Aligned_cols=29 Identities=28% Similarity=0.479 Sum_probs=22.6
Q ss_pred eEEEecCCcEEEECCCCeEEEEEcCCceE
Q 021654 253 ERFDLTVGDYLFTPAGDVHRVKYYEETEF 281 (309)
Q Consensus 253 ~~~~L~pGD~v~IP~g~~H~~~n~gd~~~ 281 (309)
.+.+.+|||++++|||..|.+.|.+++..
T Consensus 81 ~~~~Q~~Ge~V~i~pg~~H~v~n~g~~i~ 109 (114)
T PF02373_consen 81 YRFVQKPGEFVFIPPGAYHQVFNLGDNIS 109 (114)
T ss_dssp EEEEEETT-EEEE-TT-EEEEEESSSEEE
T ss_pred ccceECCCCEEEECCCceEEEEeCCceEE
Confidence 46788999999999999999999997643
No 92
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=92.83 E-value=0.97 Score=39.83 Aligned_cols=62 Identities=19% Similarity=0.251 Sum_probs=45.0
Q ss_pred cCCCcCCCeecCCc----eEEEEEecEEEEEEee-------CC--eEEEecCCc--EEEECCCCeEEEEEcCCceEE
Q 021654 221 KAGSVEPAHHHTFG----HDLVVLQGKKSVWNLT-------KG--ERFDLTVGD--YLFTPAGDVHRVKYYEETEFF 282 (309)
Q Consensus 221 ~pG~~~p~H~H~~~----e~vyVlsG~l~v~i~~-------~~--~~~~L~pGD--~v~IP~g~~H~~~n~gd~~~~ 282 (309)
.+|....+|.|... ..+.|++|++...+.. -+ ..+.|.+++ .+|||+|+.|.+.+.++...+
T Consensus 51 ~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v 127 (176)
T PF00908_consen 51 KKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDDAEV 127 (176)
T ss_dssp ETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSEEEE
T ss_pred cccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCceEE
Confidence 34777788987653 5699999999875421 02 246777776 799999999999999976544
No 93
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=92.05 E-value=0.59 Score=46.63 Aligned_cols=53 Identities=25% Similarity=0.255 Sum_probs=38.0
Q ss_pred cCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEE
Q 021654 231 HTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKW 285 (309)
Q Consensus 231 H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~ 285 (309)
...++.+++-+|++++ .++=....+.|||+++||.|+.+++.-.+....+++=
T Consensus 144 aDGD~Li~~q~G~l~l--~Te~G~L~v~pGd~~VIPRG~~~rv~l~~p~rgyi~E 196 (424)
T PF04209_consen 144 ADGDELIFPQQGSLRL--ETEFGRLDVRPGDYVVIPRGTRFRVELPGPARGYIIE 196 (424)
T ss_dssp SSEEEEEEEEES-EEE--EETTEEEEE-TTEEEEE-TT--EEEE-SSSEEEEEEE
T ss_pred CCCCEEEEEEECCEEE--EecCeeEEEcCCeEEEECCeeEEEEEeCCCceEEEEE
Confidence 4555569999999999 4556789999999999999999999888777766553
No 94
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=91.39 E-value=0.43 Score=41.29 Aligned_cols=66 Identities=12% Similarity=0.089 Sum_probs=43.5
Q ss_pred EEEEEcCCCcCCCeecCCce-----EEEEE-ecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEE
Q 021654 216 AIVRFKAGSVEPAHHHTFGH-----DLVVL-QGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFI 283 (309)
Q Consensus 216 ~~~~l~pG~~~p~H~H~~~e-----~vyVl-sG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i 283 (309)
.+..+.||+.+.+|.-+..- +-.++ .....+ .++++.+..++|.++++....+|...|.++.+-++
T Consensus 83 ~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~--~v~~~~~~w~~G~~~~fD~s~~H~~~N~~~~~Rv~ 154 (163)
T PF05118_consen 83 RFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYI--RVGGETRHWREGECWVFDDSFEHEVWNNGDEDRVV 154 (163)
T ss_dssp EEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEE--EETTEEEB--CTEEEEE-TTS-EEEEESSSS-EEE
T ss_pred EEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEE--EECCeEEEeccCcEEEEeCCEEEEEEeCCCCCEEE
Confidence 45688999999999876432 22223 244555 56799999999999999999999999998766443
No 95
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=91.29 E-value=1.6 Score=41.48 Aligned_cols=50 Identities=24% Similarity=0.253 Sum_probs=37.1
Q ss_pred cCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEE
Q 021654 231 HTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFI 283 (309)
Q Consensus 231 H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i 283 (309)
+.....++|++|.+++. .++.++.|++|++++||++...... .++..+++
T Consensus 251 ~~~~~il~v~~G~~~i~--~~~~~~~l~~G~~~~ipa~~~~~~i-~g~~~~~~ 300 (302)
T TIGR00218 251 QQSALILSVLEGSGRIK--SGGKTLPLKKGESFFIPAHLGPFTI-EGECEAIV 300 (302)
T ss_pred CCCcEEEEEEcceEEEE--ECCEEEEEecccEEEEccCCccEEE-EeeEEEEE
Confidence 44566789999999994 4678899999999999999854333 24445443
No 96
>TIGR03577 EF_0830 conserved hypothetical protein EF_0830/AHA_3911. Members of this family of small (about 120 amino acid), relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=91.27 E-value=0.51 Score=37.61 Aligned_cols=76 Identities=21% Similarity=0.298 Sum_probs=52.0
Q ss_pred HHHHHHhhcCCCCCCCceEEEEecCc-hhhhhhhcCCCceEEEEeCCHHHHHHhHhhcCceEeEeccccCC-HHHHHHHH
Q 021654 54 AEVGRRVSSSDSSDTTTRGLVACGTG-VGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTS-KESAVEIL 131 (309)
Q Consensus 54 ~~va~~v~~~~~~~~~~~gi~~CgtG-~G~~iaaNK~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~-~~~a~~i~ 131 (309)
.++..-+.+ ..+|+||-+|||| .|.-+|-||+ |-.|-.---.-++-.+.-...+|||-+|- .. +|+.+.++
T Consensus 36 mklGdVM~~----e~Ad~GiSFCGSGGAGAitAqtky-Gyk~~~gmRSveeGvTAi~eG~~VlGFGF--mD~EeLG~rlv 108 (115)
T TIGR03577 36 MKLGDVMKQ----ENADLGISFCGSGGAGAITAQTKY-GYKARYGMRSVEEGVTAINEGKNVLGFGF--MDKEELGKRLT 108 (115)
T ss_pred chHHHHHhh----hcCccceEEecCCCccceeecccc-CCccccCccchhhhHHHHhcCCeEEeecc--ccHHHHHHHHH
Confidence 466666666 6889999999997 4556666776 54444433334445555557788887764 44 56778899
Q ss_pred HHHHc
Q 021654 132 DTWLK 136 (309)
Q Consensus 132 ~~~l~ 136 (309)
++|..
T Consensus 109 ea~~k 113 (115)
T TIGR03577 109 EAFLK 113 (115)
T ss_pred HHHHh
Confidence 99975
No 97
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=91.17 E-value=1.2 Score=37.23 Aligned_cols=47 Identities=17% Similarity=0.272 Sum_probs=39.7
Q ss_pred ceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEE
Q 021654 234 GHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF 282 (309)
Q Consensus 234 ~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~ 282 (309)
.-..+.++|...+. .+++...+.||+.++++++.++++...++...+
T Consensus 56 ~~l~~~~~G~~~~~--~~g~~~~~~pg~~~l~d~~~~~~~~~~~~~~~~ 102 (172)
T PF14525_consen 56 YLLVLPLSGSARIE--QGGREVELAPGDVVLLDPGQPYRLEFSAGCRQL 102 (172)
T ss_pred EEEEEEccCCEEEE--ECCEEEEEcCCeEEEEcCCCCEEEEECCCccEE
Confidence 33478899999994 569999999999999999999999988766654
No 98
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=90.41 E-value=0.59 Score=42.37 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=46.8
Q ss_pred EEcCCCcCCCeecCCceEEEEEecEEEEEEeeCC--eEEEecCCcEEEECCCCeEEEEEcC
Q 021654 219 RFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKG--ERFDLTVGDYLFTPAGDVHRVKYYE 277 (309)
Q Consensus 219 ~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~--~~~~L~pGD~v~IP~g~~H~~~n~g 277 (309)
.--|+.....|--+..|++|-++|.+.+.+...+ +...++.||.+.+|+.++|+..-..
T Consensus 39 VGGPN~RkdyHieegeE~FyQ~KGdMvLKVie~g~~rDivI~qGe~flLParVpHSPqRFa 99 (279)
T KOG3995|consen 39 VGGPNTRKDYHIEEGEEVFYQLKGDMVLKVLEQGKHRDVVIRQGEIFLLPARVPHSPQRFA 99 (279)
T ss_pred ecCCCcccccccCCcchhheeecCceEEeeeccCcceeeEEecCcEEEeccCCCCChhhhc
Confidence 3346777788999999999999999998654222 4588999999999999999754433
No 99
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=90.09 E-value=1.4 Score=41.17 Aligned_cols=67 Identities=25% Similarity=0.321 Sum_probs=46.9
Q ss_pred EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCC-eEEEecCC--------cEEEECCCCeEEEEEcCCceEEEE
Q 021654 216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKG-ERFDLTVG--------DYLFTPAGDVHRVKYYEETEFFIK 284 (309)
Q Consensus 216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~-~~~~L~pG--------D~v~IP~g~~H~~~n~gd~~~~i~ 284 (309)
..+++++|.....-....+--++.|+|.+++.+ ++ +.+.|..- |++|+|.|..=.+.+.++.++.+.
T Consensus 30 ~~l~L~~g~~~~~~~~~~E~~vv~l~G~~~v~~--~g~~~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~ae~~~~ 105 (261)
T PF04962_consen 30 GVLRLEAGESLEFELERRELGVVNLGGKATVTV--DGEEFYELGGRESVFDGPPDALYVPRGTKVVIFASTDAEFAVC 105 (261)
T ss_dssp CCEEEECCHCCCCCCCSEEEEEEEESSSEEEEE--TTEEEEEE-TTSSGGGS--EEEEE-TT--EEEEESSTEEEEEE
T ss_pred EEEEecCCCEEeccCCCcEEEEEEeCCEEEEEe--CCceEEEecccccccCCCCcEEEeCCCCeEEEEEcCCCEEEEE
Confidence 346778877665553333333889999999954 56 78888888 999999999999999888777654
No 100
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=89.99 E-value=0.81 Score=44.64 Aligned_cols=60 Identities=20% Similarity=0.191 Sum_probs=45.9
Q ss_pred EEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeC-CeEEEecCCcEEEECCCCeEEEEEcCC
Q 021654 217 IVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTK-GERFDLTVGDYLFTPAGDVHRVKYYEE 278 (309)
Q Consensus 217 ~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~-~~~~~L~pGD~v~IP~g~~H~~~n~gd 278 (309)
..++++|...-.-.-+..-.+.|++|+.++. ++ +....+++||.+|||++.+-.+...++
T Consensus 337 ~~~v~~g~~~~~~~~~~~SIllv~~G~g~l~--~~t~~~~~v~rG~V~fI~a~~~i~~~~~sd 397 (411)
T KOG2757|consen 337 ETKVPTGESYKFPGVDGPSILLVLKGSGILK--TDTDSKILVNRGDVLFIPANHPIHLSSSSD 397 (411)
T ss_pred EeecCCCceEEeecCCCceEEEEEecceEEe--cCCCCceeeccCcEEEEcCCCCceeeccCc
Confidence 3455565554445556677899999999994 44 788999999999999998887766554
No 101
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=89.92 E-value=0.72 Score=43.28 Aligned_cols=64 Identities=19% Similarity=0.274 Sum_probs=44.4
Q ss_pred CCCcCCCeecCCceE--EEEEecEEEEEEeeCCe----EEEecC-CcEEEECCCCeEEEEEc-CCceEEEEE
Q 021654 222 AGSVEPAHHHTFGHD--LVVLQGKKSVWNLTKGE----RFDLTV-GDYLFTPAGDVHRVKYY-EETEFFIKW 285 (309)
Q Consensus 222 pG~~~p~H~H~~~e~--vyVlsG~l~v~i~~~~~----~~~L~p-GD~v~IP~g~~H~~~n~-gd~~~~i~~ 285 (309)
|++....|.|..+.+ +.|++|++.+.+..++. ...+.| +..-++||+..|++... ++..+.+.+
T Consensus 20 p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s~d~~~~l~f 91 (287)
T PRK12335 20 PEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAASDDLECQLSF 91 (287)
T ss_pred hHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcCCCcEEEEEE
Confidence 566777898864444 89999999996542222 134555 45657999999999888 467766443
No 102
>PHA00672 hypothetical protein
Probab=89.63 E-value=1.7 Score=36.43 Aligned_cols=82 Identities=18% Similarity=0.237 Sum_probs=62.9
Q ss_pred EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEEcCccccccch
Q 021654 216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDE 295 (309)
Q Consensus 216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~~~~~i~~~e 295 (309)
..++++.|....--.|..+.+ .+++|..++ .+|++...|..-..+--|||....+.+..|+... .+|..+
T Consensus 50 Rei~IPkGt~LtG~~hkf~~~-ii~sG~itV--~tdge~~rl~g~~~i~~~aG~KragyAHeDT~wt-------~~h~se 119 (152)
T PHA00672 50 RTIRIPAGVALTGALIKVSTV-LIFSGHATV--FIGGEAVELRGYHVIPASAGRKQAFVAHADTDLT-------MLFPSE 119 (152)
T ss_pred EEEeccCceeeeeeeeEeeEE-EEecccEEE--EeCCcEEEEecceeeecCCCcccceeeeccceEE-------EEeccc
Confidence 456778888776677877777 889999999 5678999998888899999999999998888865 445555
Q ss_pred h--HHHHHHHHhhh
Q 021654 296 D--LEAAKKAVEKE 307 (309)
Q Consensus 296 ~--~~~~~~~~~~~ 307 (309)
+ +.+|.+.++.|
T Consensus 120 er~v~~a~a~~~~~ 133 (152)
T PHA00672 120 ARSVAEAEAEFTDE 133 (152)
T ss_pred cccHHHHHhhcccH
Confidence 4 56666665543
No 103
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=89.34 E-value=1.4 Score=44.02 Aligned_cols=53 Identities=21% Similarity=0.127 Sum_probs=43.1
Q ss_pred ecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEE
Q 021654 230 HHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK 284 (309)
Q Consensus 230 ~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~ 284 (309)
-++.++++++-+|.+.+. ++=....+.|||+++||.|+.+++.-.+....+|+
T Consensus 145 NaDGD~Livpq~G~l~i~--TEfG~L~v~pgei~VIPRG~~frv~l~gp~rgyi~ 197 (429)
T TIGR01015 145 NADGDFLIVPQQGALLIT--TEFGRLLVEPNEICVIPRGVRFRVTVLEPARGYIC 197 (429)
T ss_pred ccCCCEEEEEEeCcEEEE--EeccceEecCCCEEEecCccEEEEeeCCCceEEEE
Confidence 456667799999999994 34567899999999999999999987776666554
No 104
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=88.64 E-value=2.6 Score=38.00 Aligned_cols=67 Identities=21% Similarity=0.249 Sum_probs=47.3
Q ss_pred EEEEEcCCCcCCCeecCCceE-EEEEecEEEEEEee--C---Ce------E---------EEecCCc-EEEECCC--CeE
Q 021654 216 AIVRFKAGSVEPAHHHTFGHD-LVVLQGKKSVWNLT--K---GE------R---------FDLTVGD-YLFTPAG--DVH 271 (309)
Q Consensus 216 ~~~~l~pG~~~p~H~H~~~e~-vyVlsG~l~v~i~~--~---~~------~---------~~L~pGD-~v~IP~g--~~H 271 (309)
.+|.+++|..+|+|-|+...- .-||.|++.++... + +. . ....+++ ++..|.. -.|
T Consensus 47 ~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL~P~~ggNiH 126 (200)
T PF07847_consen 47 GIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVLYPTSGGNIH 126 (200)
T ss_pred EEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEEccCCCCeeE
Confidence 788999999999999999887 66999999995421 1 00 0 0122333 5556654 899
Q ss_pred EEEEcC-CceEE
Q 021654 272 RVKYYE-ETEFF 282 (309)
Q Consensus 272 ~~~n~g-d~~~~ 282 (309)
++.+.+ .+.++
T Consensus 127 ~f~a~~~p~Afl 138 (200)
T PF07847_consen 127 EFTALTGPCAFL 138 (200)
T ss_pred EEEeCCCCeEEE
Confidence 999998 55555
No 105
>PRK10579 hypothetical protein; Provisional
Probab=88.55 E-value=3.4 Score=32.78 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=40.0
Q ss_pred CceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceE
Q 021654 233 FGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEF 281 (309)
Q Consensus 233 ~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~ 281 (309)
..|..-|++|++++.+...++.....+|+.+.+|++..-.++....+..
T Consensus 41 ~~E~MeivsG~l~V~Lpg~~ew~~~~aG~sF~VpanssF~l~v~~~t~Y 89 (94)
T PRK10579 41 EPEEMTVISGALNVLLPGATDWQVYEAGEVFNVPGHSEFHLQVAEPTSY 89 (94)
T ss_pred CcEEEEEEeeEEEEECCCCcccEEeCCCCEEEECCCCeEEEEECcceee
Confidence 4567899999999976544456799999999999999999888765544
No 106
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=88.42 E-value=3.1 Score=33.01 Aligned_cols=50 Identities=22% Similarity=0.237 Sum_probs=36.6
Q ss_pred CceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEE
Q 021654 233 FGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF 282 (309)
Q Consensus 233 ~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~ 282 (309)
..|..-|++|.+++.+-..++.....+|+++-+|++..-.++....+..+
T Consensus 41 ~~E~M~vvsG~l~V~lpg~~ew~~~~aGesF~VpanssF~v~v~~~~~Y~ 90 (94)
T PF06865_consen 41 APERMEVVSGELEVKLPGEDEWQTYSAGESFEVPANSSFDVKVKEPTAYL 90 (94)
T ss_dssp S-EEEEEEESEEEEEETT-SS-EEEETT-EEEE-TTEEEEEEESS-EEEE
T ss_pred CCEEEEEEEeEEEEEcCCCcccEEeCCCCeEEECCCCeEEEEECcceeeE
Confidence 45679999999999875444578899999999999999999987665543
No 107
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=87.84 E-value=7 Score=31.83 Aligned_cols=102 Identities=11% Similarity=0.037 Sum_probs=57.9
Q ss_pred HHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCCceEEEEecCc-hhhhhhhcCCCceEEEEeCCHHHHHHh
Q 021654 28 DALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTG-VGVAIFANKNPGVFATTCLTPADALNT 106 (309)
Q Consensus 28 ~~l~~~l~~~g~ev~d~G~~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG-~G~~iaaNK~~giraa~~~~~~~A~~~ 106 (309)
+.+..+|+..||+|+++|.+..++ .+.+.+.+ .. -..|.+|++= .-+.. + ...++..
T Consensus 17 ~~~~~~l~~~G~~vi~lG~~vp~e---~~~~~a~~----~~-~d~V~iS~~~~~~~~~----~----------~~~~~~L 74 (122)
T cd02071 17 KVIARALRDAGFEVIYTGLRQTPE---EIVEAAIQ----ED-VDVIGLSSLSGGHMTL----F----------PEVIELL 74 (122)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHH---HHHHHHHH----cC-CCEEEEcccchhhHHH----H----------HHHHHHH
Confidence 667778999999999999875444 33333333 22 3477777662 11110 0 2233333
Q ss_pred Hhh-cCceE-eEeccccCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhhhhhh
Q 021654 107 RSI-NNCNV-LAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCFFD 160 (309)
Q Consensus 107 r~h-N~aNv-l~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~~fl~ 160 (309)
|+- ++ ++ +.+|++.. .+..+.|.+.-|+.-++.+... +.+..|++
T Consensus 75 ~~~~~~-~i~i~~GG~~~-----~~~~~~~~~~G~d~~~~~~~~~---~~~~~~~~ 121 (122)
T cd02071 75 RELGAG-DILVVGGGIIP-----PEDYELLKEMGVAEIFGPGTSI---EEIIDKIR 121 (122)
T ss_pred HhcCCC-CCEEEEECCCC-----HHHHHHHHHCCCCEEECCCCCH---HHHHHHHh
Confidence 443 33 43 45666532 3446778888887777666533 44555554
No 108
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=87.77 E-value=3.4 Score=39.04 Aligned_cols=56 Identities=20% Similarity=0.235 Sum_probs=39.8
Q ss_pred EEEEcCCCcCCCee-cCCceE-EEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEE
Q 021654 217 IVRFKAGSVEPAHH-HTFGHD-LVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274 (309)
Q Consensus 217 ~~~l~pG~~~p~H~-H~~~e~-vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~ 274 (309)
-+.++.+....... =...|. ++.|.|++++. ++++++.|.+.|++|+|.|..-...
T Consensus 56 ~l~l~~~~~~~~~~fl~rrE~giV~lgG~~~V~--vdG~~~~l~~~d~LYVp~G~~~v~~ 113 (276)
T PRK00924 56 PLKLEAGKQLGVSYFLERRELGIINIGGAGTVT--VDGETYELGHRDALYVGKGAKEVVF 113 (276)
T ss_pred ceecccCccccceeecCCcEEEEEEccceEEEE--ECCEEEecCCCcEEEECCCCcEEEE
Confidence 34454444443333 344555 88999999995 5699999999999999999875444
No 109
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=87.37 E-value=11 Score=31.64 Aligned_cols=100 Identities=11% Similarity=0.077 Sum_probs=58.2
Q ss_pred HHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCCCceEEEEeCCHHHHHHh
Q 021654 27 KDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNT 106 (309)
Q Consensus 27 k~~l~~~l~~~g~ev~d~G~~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~~giraa~~~~~~~A~~~ 106 (309)
|+.+...|+..||||+|+|.+-.++ .+.+++.+ ..++ .|.+ ++=+|-.| +.+ .....+-
T Consensus 16 kniv~~~L~~~GfeVidLG~~v~~e---~~v~aa~~----~~ad-iVgl-S~L~t~~~-----~~~-------~~~~~~l 74 (128)
T cd02072 16 NKILDHAFTEAGFNVVNLGVLSPQE---EFIDAAIE----TDAD-AILV-SSLYGHGE-----IDC-------KGLREKC 74 (128)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHH---HHHHHHHH----cCCC-EEEE-eccccCCH-----HHH-------HHHHHHH
Confidence 6788899999999999999865443 33333333 2232 2222 21111111 111 1333444
Q ss_pred HhhcCceE-eEeccc-cCCHHHHHHHHHHHHcCCCCCCCCCCC
Q 021654 107 RSINNCNV-LAVSGM-STSKESAVEILDTWLKTPFKAPCPASG 147 (309)
Q Consensus 107 r~hN~aNv-l~lg~~-~~~~~~a~~i~~~~l~~~f~~~~p~~~ 147 (309)
|+.+=..+ +.+|+. .++++...+..+.+.+--|..-||.+.
T Consensus 75 ~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt 117 (128)
T cd02072 75 DEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGT 117 (128)
T ss_pred HHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCCEEECcCC
Confidence 55432134 333443 478888888888899999988888766
No 110
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=87.24 E-value=0.49 Score=46.18 Aligned_cols=63 Identities=21% Similarity=0.167 Sum_probs=45.2
Q ss_pred EcCCCcCCCeecCCceEEEEEecEEEEEEeeC--------------------CeEEEecCCcEEEECCCCeEEEEEcCCc
Q 021654 220 FKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTK--------------------GERFDLTVGDYLFTPAGDVHRVKYYEET 279 (309)
Q Consensus 220 l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~--------------------~~~~~L~pGD~v~IP~g~~H~~~n~gd~ 279 (309)
..+|+...+|+-+.+-+++-..|+-+..+... ...+++.|||.+||||+.+|.-....++
T Consensus 126 a~~GGgvg~H~D~YDVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp~~~H~gvae~dc 205 (383)
T COG2850 126 AAPGGGVGPHFDQYDVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYGVAEDDC 205 (383)
T ss_pred ecCCCccCccccchheeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCCCCCcCCcccccc
Confidence 35688899998777766666666666654211 1236789999999999999998877655
Q ss_pred eEE
Q 021654 280 EFF 282 (309)
Q Consensus 280 ~~~ 282 (309)
..+
T Consensus 206 ~ty 208 (383)
T COG2850 206 MTY 208 (383)
T ss_pred cce
Confidence 543
No 111
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=86.77 E-value=0.31 Score=37.17 Aligned_cols=20 Identities=40% Similarity=0.846 Sum_probs=17.0
Q ss_pred eEEEEecCchhhhhhh-cCCC
Q 021654 71 RGLVACGTGVGVAIFA-NKNP 90 (309)
Q Consensus 71 ~gi~~CgtG~G~~iaa-NK~~ 90 (309)
+.+++||+|+|.|+.+ +|++
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~ 21 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIK 21 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHH
T ss_pred CEEEECCChHHHHHHHHHHHH
Confidence 4689999999999998 7663
No 112
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=86.54 E-value=2.8 Score=41.53 Aligned_cols=48 Identities=15% Similarity=0.266 Sum_probs=36.2
Q ss_pred CCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEE
Q 021654 232 TFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF 282 (309)
Q Consensus 232 ~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~ 282 (309)
.....++|++|++++. .+++++.|++|+++|+|++...... .++..++
T Consensus 338 ~~~~Illv~~G~~~i~--~~~~~~~l~~G~~~fipa~~~~~~~-~g~~~~~ 385 (389)
T PRK15131 338 QSAAILFCVEGEAVLW--KGEQQLTLKPGESAFIAANESPVTV-SGHGRLA 385 (389)
T ss_pred CCcEEEEEEcceEEEE--eCCeEEEECCCCEEEEeCCCccEEE-ecccEEE
Confidence 3456689999999994 4678899999999999998765443 2444443
No 113
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=86.42 E-value=7.4 Score=37.46 Aligned_cols=38 Identities=29% Similarity=0.445 Sum_probs=33.0
Q ss_pred cCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCe
Q 021654 231 HTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDV 270 (309)
Q Consensus 231 H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~ 270 (309)
+.....++|++|.+++. .+++++.|++|+++++|+...
T Consensus 258 ~~~~~il~v~eG~~~l~--~~~~~~~l~~G~s~~ipa~~~ 295 (312)
T COG1482 258 QESFSILLVLEGEGTLI--GGGQTLKLKKGESFFIPANDG 295 (312)
T ss_pred CCCcEEEEEEcCeEEEe--cCCEEEEEcCCcEEEEEcCCC
Confidence 44778899999999995 468999999999999999844
No 114
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=86.06 E-value=2.7 Score=42.12 Aligned_cols=53 Identities=19% Similarity=0.176 Sum_probs=41.3
Q ss_pred ecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcC-CceEEEE
Q 021654 230 HHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYE-ETEFFIK 284 (309)
Q Consensus 230 ~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~g-d~~~~i~ 284 (309)
-+..++.+++-+|.+.+. ++=....+.|||+++||.|+.+++.-.+ ....+|+
T Consensus 151 NaDGD~Livpq~G~l~i~--TEfG~L~v~pgei~VIPRG~~frv~l~~gp~rgyi~ 204 (438)
T PRK05341 151 NADGELLIVPQQGRLRLA--TELGVLDVEPGEIAVIPRGVKFRVELPDGPARGYVC 204 (438)
T ss_pred cCCCCEEEEEEeCCEEEE--EeccceEecCCCEEEEcCccEEEEecCCCCeeEEEE
Confidence 355666699999999994 4456789999999999999999998533 4555444
No 115
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=84.77 E-value=0.31 Score=38.44 Aligned_cols=19 Identities=26% Similarity=0.543 Sum_probs=17.2
Q ss_pred EEEEecCchhhhhhhcCCC
Q 021654 72 GLVACGTGVGVAIFANKNP 90 (309)
Q Consensus 72 gi~~CgtG~G~~iaaNK~~ 90 (309)
-+++||+|++.|++++|++
T Consensus 2 Il~~Cg~G~sTS~~~~ki~ 20 (96)
T cd05564 2 ILLVCSAGMSTSILVKKMK 20 (96)
T ss_pred EEEEcCCCchHHHHHHHHH
Confidence 4789999999999999984
No 116
>PLN02288 mannose-6-phosphate isomerase
Probab=84.58 E-value=2.4 Score=42.06 Aligned_cols=52 Identities=17% Similarity=0.187 Sum_probs=35.8
Q ss_pred EEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeE--EEecCCcEEEECCCCe
Q 021654 217 IVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGER--FDLTVGDYLFTPAGDV 270 (309)
Q Consensus 217 ~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~--~~L~pGD~v~IP~g~~ 270 (309)
.+++.++.......+.....++|++|++++.. +++. ..|++|+++|+|++..
T Consensus 338 ~~~l~~~~~~~~~~~~gp~Illv~~G~~~i~~--~~~~~~~~l~~G~~~fv~a~~~ 391 (394)
T PLN02288 338 HCDVPPGASVVFPAVPGPSVFLVIEGEGVLST--GSSEDGTAAKRGDVFFVPAGTE 391 (394)
T ss_pred EEEeCCCCeEeecCCCCCEEEEEEcCEEEEec--CCccceEEEeceeEEEEeCCCc
Confidence 34555554322222556678999999999953 3444 6799999999998754
No 117
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=84.20 E-value=9.7 Score=31.83 Aligned_cols=121 Identities=13% Similarity=0.085 Sum_probs=63.3
Q ss_pred cEEEEEe---CcccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCC
Q 021654 13 LKIIAGA---DSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKN 89 (309)
Q Consensus 13 mki~i~~---D~~g~~lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~ 89 (309)
.||++|. |-= --=|+.+...|+..||||+|.|.+.-++ .+++++.+ . .-..|.+|++=-...-. +
T Consensus 3 ~~v~~a~~g~D~H-d~g~~iv~~~l~~~GfeVi~lg~~~s~e---~~v~aa~e----~-~adii~iSsl~~~~~~~---~ 70 (132)
T TIGR00640 3 PRILVAKMGQDGH-DRGAKVIATAYADLGFDVDVGPLFQTPE---EIARQAVE----A-DVHVVGVSSLAGGHLTL---V 70 (132)
T ss_pred CEEEEEeeCCCcc-HHHHHHHHHHHHhCCcEEEECCCCCCHH---HHHHHHHH----c-CCCEEEEcCchhhhHHH---H
Confidence 4666653 321 1257888999999999999999864443 33333333 2 23578888754211111 1
Q ss_pred CceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhhhhhhhc
Q 021654 90 PGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCFFDKS 162 (309)
Q Consensus 90 ~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~~fl~~s 162 (309)
+.....-++.+..++..+-+.....+.. +.|....+.+-++.... +.+|-+++.+.
T Consensus 71 ----------~~~~~~L~~~g~~~i~vivGG~~~~~~~----~~l~~~Gvd~~~~~gt~---~~~i~~~l~~~ 126 (132)
T TIGR00640 71 ----------PALRKELDKLGRPDILVVVGGVIPPQDF----DELKEMGVAEIFGPGTP---IPESAIFLLKK 126 (132)
T ss_pred ----------HHHHHHHHhcCCCCCEEEEeCCCChHhH----HHHHHCCCCEEECCCCC---HHHHHHHHHHH
Confidence 2333333443332554444443344332 34666666655555442 24455555543
No 118
>PLN02658 homogentisate 1,2-dioxygenase
Probab=84.12 E-value=3.7 Score=41.10 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=41.1
Q ss_pred ecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcC-CceEEEE
Q 021654 230 HHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYE-ETEFFIK 284 (309)
Q Consensus 230 ~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~g-d~~~~i~ 284 (309)
-++.++++++-+|.+.+. ++=....+.|||+++||.|+.+++.-.+ ....+|+
T Consensus 144 NaDGD~Livpq~G~l~i~--TEfG~L~v~pgei~VIPRG~~frv~l~~gp~rgyv~ 197 (435)
T PLN02658 144 NADGDFLIVPQQGRLWIK--TELGKLQVSPGEIVVIPRGFRFAVDLPDGPSRGYVL 197 (435)
T ss_pred cCCCCEEEEEEeCCEEEE--EeccceEecCCCEEEecCccEEEEecCCCCeeEEEE
Confidence 355666699999999994 3456789999999999999999998643 4555443
No 119
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=83.71 E-value=0.44 Score=37.63 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=19.1
Q ss_pred ceEEEEecCchhhhhhhcCCCc
Q 021654 70 TRGLVACGTGVGVAIFANKNPG 91 (309)
Q Consensus 70 ~~gi~~CgtG~G~~iaaNK~~g 91 (309)
-+-+++||+|++.|+.+||++-
T Consensus 4 ~~ILl~C~~G~sSS~l~~k~~~ 25 (95)
T TIGR00853 4 TNILLLCAAGMSTSLLVNKMNK 25 (95)
T ss_pred cEEEEECCCchhHHHHHHHHHH
Confidence 3678999999999999999853
No 120
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=82.87 E-value=0.59 Score=37.68 Aligned_cols=20 Identities=25% Similarity=0.699 Sum_probs=17.9
Q ss_pred eEEEEecCchhhhhhhcCCC
Q 021654 71 RGLVACGTGVGVAIFANKNP 90 (309)
Q Consensus 71 ~gi~~CgtG~G~~iaaNK~~ 90 (309)
+-+++||+|++.||++||.+
T Consensus 3 kILlvCg~G~STSlla~k~k 22 (104)
T PRK09590 3 KALIICAAGMSSSMMAKKTT 22 (104)
T ss_pred EEEEECCCchHHHHHHHHHH
Confidence 46899999999999999874
No 121
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=82.81 E-value=1 Score=34.67 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=17.3
Q ss_pred HHHHHHHHhCCCcEEEecCC
Q 021654 28 DALVSHLRSLNIDVEDLGTS 47 (309)
Q Consensus 28 ~~l~~~l~~~g~ev~d~G~~ 47 (309)
..|+++|+++||+|+|++..
T Consensus 11 s~v~~~L~~~GyeVv~l~~~ 30 (80)
T PF03698_consen 11 SNVKEALREKGYEVVDLENE 30 (80)
T ss_pred hHHHHHHHHCCCEEEecCCc
Confidence 36889999999999999964
No 122
>COG0127 Xanthosine triphosphate pyrophosphatase [Nucleotide transport and metabolism]
Probab=82.09 E-value=1.5 Score=39.27 Aligned_cols=81 Identities=23% Similarity=0.278 Sum_probs=57.4
Q ss_pred CcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-----------CCcchhHHHHHHhhcCCCCCCCceEEEEecCch
Q 021654 12 PLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----------DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGV 80 (309)
Q Consensus 12 ~mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~-----------~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~ 80 (309)
+|||++++-+.| .+ .+++..|...|++|..+... ++.+.|..-++.++. ....-++..-||+
T Consensus 1 ~~ki~~AT~N~~-K~-~E~~~il~~~~~ei~~~~~~~~~~e~eEtg~tf~enA~~Ka~~~a~-----~~g~pviaDDSGL 73 (194)
T COG0127 1 MMKIVLATGNKG-KL-RELKSILAPGGIEIESLKELGVEIEVEETGLTFEENALLKARAAAK-----ATGLPVIADDSGL 73 (194)
T ss_pred CcEEEEEcCChH-HH-HHHHHHhcccCceEEEccccCCCCCccchhhHHHHHHHHHHHHHHh-----hcCCcEEEecCce
Confidence 479999999887 44 56788888877999876542 134455555555554 2456788888887
Q ss_pred hhhhhhcCCCceEEEEeCCH
Q 021654 81 GVAIFANKNPGVFATTCLTP 100 (309)
Q Consensus 81 G~~iaaNK~~giraa~~~~~ 100 (309)
-+. +.|-+|||+.|.....
T Consensus 74 ~v~-aL~G~PGvYSar~~~~ 92 (194)
T COG0127 74 CVD-ALNGFPGVYSARFAGE 92 (194)
T ss_pred EEe-ccCCCCcceeehhccc
Confidence 765 7899999988776643
No 123
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=82.00 E-value=2.1 Score=37.03 Aligned_cols=107 Identities=20% Similarity=0.245 Sum_probs=62.7
Q ss_pred HHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhh---------hhhcCCCce----E
Q 021654 29 ALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVA---------IFANKNPGV----F 93 (309)
Q Consensus 29 ~l~~~l~~~g~ev~d~G~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~---------iaaNK~~gi----r 93 (309)
.|...|++.|+++.+++. ++...+...+.+.+.. ..+|.-|+-.|||.|-. +.-=.+||+ +
T Consensus 26 ~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~----~~~DlVIttGGtg~g~~D~t~eal~~l~~~~l~G~~~~~~ 101 (163)
T TIGR02667 26 YLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIAD----PDVQVILITGGTGFTGRDVTPEALEPLFDKTVEGFGELFR 101 (163)
T ss_pred HHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhc----CCCCEEEECCCcCCCCCCCcHHHHHHHHCCcCCcHHHHHH
Confidence 677778899999999985 5677777777776644 46788888888887631 111122332 0
Q ss_pred EEEeCC-HHHHHH----hHhhcCceEeEeccccCCHHHHH-HHHHHHHcCCC
Q 021654 94 ATTCLT-PADALN----TRSINNCNVLAVSGMSTSKESAV-EILDTWLKTPF 139 (309)
Q Consensus 94 aa~~~~-~~~A~~----~r~hN~aNvl~lg~~~~~~~~a~-~i~~~~l~~~f 139 (309)
..-... ...+.+ +...++.=|++|++--.+...+. .++.-+|..-|
T Consensus 102 ~i~~~p~G~~~~lsr~~~g~~~~~~v~~LPG~P~aa~~~~~~~v~P~l~~~~ 153 (163)
T TIGR02667 102 QLSYEEIGTSTIQSRALAGLANGTFVFCLPGSTGACRTAWDKIIAAQLDARH 153 (163)
T ss_pred HHhhcccCHHHHHhhhhheeeCCeEEEECCCCHHHHHHHHHHHHHHHHHHHh
Confidence 000111 112221 23346777899998766654444 35665655544
No 124
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=81.35 E-value=0.63 Score=34.87 Aligned_cols=20 Identities=30% Similarity=0.740 Sum_probs=16.9
Q ss_pred eEEEEecCchhhh-hhhcCCC
Q 021654 71 RGLVACGTGVGVA-IFANKNP 90 (309)
Q Consensus 71 ~gi~~CgtG~G~~-iaaNK~~ 90 (309)
+.+++|++|.|.+ |.+||+.
T Consensus 2 kilivC~~G~~~s~~l~~~l~ 22 (85)
T cd05568 2 KALVVCPSGIGTSRLLKSKLK 22 (85)
T ss_pred eEEEECCCCHHHHHHHHHHHH
Confidence 5789999999999 8887754
No 125
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=81.21 E-value=5.2 Score=33.18 Aligned_cols=95 Identities=21% Similarity=0.304 Sum_probs=55.6
Q ss_pred CcEEEEEeC--cccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCC
Q 021654 12 PLKIIAGAD--SFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKN 89 (309)
Q Consensus 12 ~mki~i~~D--~~g~~lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~ 89 (309)
.-+|+||.| ..+-.+++.+.+-|...|.+|.|+|.-.-|.+...+... .++-||.|=.| ..
T Consensus 40 ~~~VvVg~D~R~~s~~~~~~~~~~l~~~G~~V~~~g~~~tP~~~~~~~~~--------~~~ggi~iTaS---------hn 102 (137)
T PF02878_consen 40 GSRVVVGRDTRPSSPMLAKALAAGLRANGVDVIDIGLVPTPALSFAIRQL--------NADGGIMITAS---------HN 102 (137)
T ss_dssp SSEEEEEE-SSTTHHHHHHHHHHHHHHTTEEEEEEEEB-HHHHHHHHHHH--------TESEEEEE--T---------TS
T ss_pred CCeEEEEEcccCCHHHHHHHHHHHHhhcccccccccccCcHHhhhhcccc--------ccceeeEEEec---------CC
Confidence 458999999 677779999999999999999999954444444443331 23445544322 22
Q ss_pred CceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCC
Q 021654 90 PGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPF 139 (309)
Q Consensus 90 ~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f 139 (309)
|+- +|.--+..=.+..+.++.-++|.+.+.+.+|
T Consensus 103 p~~----------------~ngik~~~~~G~~~~~~~~~~I~~~~~~~~~ 136 (137)
T PF02878_consen 103 PPG----------------YNGIKFFDANGGPISPEEERKIEQIIEREEF 136 (137)
T ss_dssp -TT----------------EEEEEEEETTSSB--HHHHHHHHHHHHHT-E
T ss_pred CCC----------------cceEEEEeCCCCcCCHHHHHHHHHHHHhhhc
Confidence 221 2222222223447778888888887766554
No 126
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=81.16 E-value=0.6 Score=35.72 Aligned_cols=20 Identities=50% Similarity=0.785 Sum_probs=16.7
Q ss_pred eEEEEecCchhhh-hhhcCCC
Q 021654 71 RGLVACGTGVGVA-IFANKNP 90 (309)
Q Consensus 71 ~gi~~CgtG~G~~-iaaNK~~ 90 (309)
+.+++|++|+|.| |.+.|++
T Consensus 2 ~ilivC~~G~~tS~~l~~~i~ 22 (89)
T cd05566 2 KILVACGTGVATSTVVASKVK 22 (89)
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 5789999999999 7777664
No 127
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=81.02 E-value=0.99 Score=35.50 Aligned_cols=48 Identities=13% Similarity=0.231 Sum_probs=28.8
Q ss_pred eEEEEecCchhhhhh-hcCCCc------eEEEEeC-CHHHHHHhHhhcCceEeEeccc
Q 021654 71 RGLVACGTGVGVAIF-ANKNPG------VFATTCL-TPADALNTRSINNCNVLAVSGM 120 (309)
Q Consensus 71 ~gi~~CgtG~G~~ia-aNK~~g------iraa~~~-~~~~A~~~r~hN~aNvl~lg~~ 120 (309)
+-+++||+|+|-|.. ++|++- |-+-..+ +..+ +....+|..++..+..
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~e--~~~~~~~~D~iv~t~~ 59 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNE--IETYMDGVHLICTTAR 59 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecHHH--HhhhcCCCCEEEECCc
Confidence 478999999999988 677654 3333333 2222 2223356667766554
No 128
>PRK03094 hypothetical protein; Provisional
Probab=80.63 E-value=1.2 Score=34.27 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=15.8
Q ss_pred HHHHHHHhCCCcEEEecC
Q 021654 29 ALVSHLRSLNIDVEDLGT 46 (309)
Q Consensus 29 ~l~~~l~~~g~ev~d~G~ 46 (309)
.|+++|+++||+|+|+-.
T Consensus 12 ~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 12 DVQQALKQKGYEVVQLRS 29 (80)
T ss_pred HHHHHHHHCCCEEEecCc
Confidence 488999999999999964
No 129
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=80.18 E-value=2.6 Score=35.78 Aligned_cols=49 Identities=24% Similarity=0.207 Sum_probs=36.1
Q ss_pred HHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCCceEEEEecCchh
Q 021654 29 ALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVG 81 (309)
Q Consensus 29 ~l~~~l~~~g~ev~d~G~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G 81 (309)
.|.++|+++|+++...+. +|..++...+.+...+ ..+|.-|+..|+|.|
T Consensus 24 ~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~----~~~DlVittGG~s~g 74 (152)
T cd00886 24 ALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADE----DGVDLILTTGGTGLA 74 (152)
T ss_pred HHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhc----CCCCEEEECCCcCCC
Confidence 577789999999999985 4566677777666553 357777777777766
No 130
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=79.71 E-value=0.83 Score=36.83 Aligned_cols=20 Identities=15% Similarity=0.396 Sum_probs=17.8
Q ss_pred eEEEEecCchhhhhhhcCCC
Q 021654 71 RGLVACGTGVGVAIFANKNP 90 (309)
Q Consensus 71 ~gi~~CgtG~G~~iaaNK~~ 90 (309)
+-+++|++|+|.||.+||..
T Consensus 5 kIllvC~~G~sTSll~~km~ 24 (106)
T PRK10499 5 HIYLFCSAGMSTSLLVSKMR 24 (106)
T ss_pred EEEEECCCCccHHHHHHHHH
Confidence 67999999999999998764
No 131
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=78.92 E-value=0.8 Score=35.21 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=16.0
Q ss_pred eEEEEecCchhhhhh-hcCCC
Q 021654 71 RGLVACGTGVGVAIF-ANKNP 90 (309)
Q Consensus 71 ~gi~~CgtG~G~~ia-aNK~~ 90 (309)
+.+++||+|+|.|.. +.|++
T Consensus 2 kilvvCg~G~gtS~ml~~ki~ 22 (87)
T cd05567 2 KIVFACDAGMGSSAMGASVLR 22 (87)
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 578999999999877 65553
No 132
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=78.16 E-value=5.4 Score=31.30 Aligned_cols=24 Identities=21% Similarity=0.159 Sum_probs=15.5
Q ss_pred EEEecCCcEEEECCCCeEEEEEcC
Q 021654 254 RFDLTVGDYLFTPAGDVHRVKYYE 277 (309)
Q Consensus 254 ~~~L~pGD~v~IP~g~~H~~~n~g 277 (309)
....++||.+++|+...|++.-..
T Consensus 67 ~~~p~~G~lvlFPs~l~H~v~p~~ 90 (101)
T PF13759_consen 67 IVEPEEGDLVLFPSWLWHGVPPNN 90 (101)
T ss_dssp EE---TTEEEEEETTSEEEE----
T ss_pred EeCCCCCEEEEeCCCCEEeccCcC
Confidence 356779999999999999985543
No 133
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=78.05 E-value=7.5 Score=33.98 Aligned_cols=63 Identities=19% Similarity=0.228 Sum_probs=45.2
Q ss_pred EEEEEcCCCcCCCeecCCceEEEEEecEEEEEE--eeC-------CeEEEecCCcEEEECCCCeEEEEEcCCc
Q 021654 216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWN--LTK-------GERFDLTVGDYLFTPAGDVHRVKYYEET 279 (309)
Q Consensus 216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i--~~~-------~~~~~L~pGD~v~IP~g~~H~~~n~gd~ 279 (309)
..+++.||...|.|-|...-.+=++.|.-+=++ ..+ ++...+.||..- +-||..|++.|++..
T Consensus 76 ~~~t~~PG~~~p~HnH~~wglVgil~G~E~n~~y~~~~~~~~~P~~qdk~~apgeV~-lSpgdihsv~n~~sd 147 (191)
T COG5553 76 YHITLSPGVQYPPHNHLMWGLVGILWGGETNFIYPLAGEEVDEPERQDKFAAPGEVH-LSPGDIHSVANTGSD 147 (191)
T ss_pred EEEEeCCCcccCCcccchheeeeeeecccccceecccCCCCCCcchhhhhcCcceEe-eCCCCeeeecccCCC
Confidence 567999999999999998888888888755322 111 223466777765 666888988887744
No 134
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=77.59 E-value=15 Score=36.82 Aligned_cols=93 Identities=20% Similarity=0.232 Sum_probs=63.8
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCCCc
Q 021654 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKNPG 91 (309)
Q Consensus 14 ki~i~~D~--~g~~lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~~g 91 (309)
+|+||.|. ++-.+++.+..-|.+.|.+|+|+|.-.-|-+...+ .. ..++-||.|-+|
T Consensus 40 ~VvVg~D~R~ss~~l~~a~a~gL~s~Gi~V~~~g~~pTP~~~~av----~~----~~~~gGI~ITaS------------- 98 (456)
T PRK15414 40 TIVLGGDVRLTSETLKLALAKGLQDAGVDVLDIGMSGTEEIYFAT----FH----LGVDGGIEVTAS------------- 98 (456)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHHCCCeEEEeCCcChHHHHHhh----hc----cCCCeEEEEecC-------------
Confidence 69999997 77789999999999999999999965555544433 23 345556665544
Q ss_pred eEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHH-HcCCC
Q 021654 92 VFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTW-LKTPF 139 (309)
Q Consensus 92 iraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~-l~~~f 139 (309)
||| .+.|.-.+..=+++.+.++...+.++.. ...+|
T Consensus 99 ------HNP------~~~NG~Ki~~~~g~~~~~~~~~~~i~~~~~~~~~ 135 (456)
T PRK15414 99 ------HNP------MDYNGMKLVREGARPISGDTGLRDVQRLAEANDF 135 (456)
T ss_pred ------CCC------CCCCCEEeecCCCcccCcHHHHHHHHHHHhcCCc
Confidence 233 6788888887788877776533223443 33445
No 135
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=77.53 E-value=7 Score=31.32 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=21.9
Q ss_pred eCcccHHHHHHHHHHHHhCCCcEEEecCC
Q 021654 19 ADSFGAELKDALVSHLRSLNIDVEDLGTS 47 (309)
Q Consensus 19 ~D~~g~~lk~~l~~~l~~~g~ev~d~G~~ 47 (309)
.|+--+.++ .+-.+|+..||+|+++|.+
T Consensus 9 ~e~H~lG~~-~~~~~l~~~G~~V~~lg~~ 36 (119)
T cd02067 9 GDGHDIGKN-IVARALRDAGFEVIDLGVD 36 (119)
T ss_pred CchhhHHHH-HHHHHHHHCCCEEEECCCC
Confidence 455556664 7888899999999999974
No 136
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=77.31 E-value=2 Score=41.31 Aligned_cols=21 Identities=38% Similarity=0.673 Sum_probs=19.3
Q ss_pred eEEEecCCcEEEECCCCeEEE
Q 021654 253 ERFDLTVGDYLFTPAGDVHRV 273 (309)
Q Consensus 253 ~~~~L~pGD~v~IP~g~~H~~ 273 (309)
....|+|||++|+|+|++|..
T Consensus 158 n~v~lkpGe~~fl~Agt~HA~ 178 (312)
T COG1482 158 NRVKLKPGEAFFLPAGTPHAY 178 (312)
T ss_pred cEEecCCCCEEEecCCCceee
Confidence 578999999999999999975
No 137
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=77.18 E-value=7.6 Score=36.34 Aligned_cols=60 Identities=22% Similarity=0.386 Sum_probs=33.1
Q ss_pred cCCCeecCCc--------eEEEEEe-----cEEEEEEeeC----CeEEEecCCcEEEECCCCeEEEEEcCCceEEEEE
Q 021654 225 VEPAHHHTFG--------HDLVVLQ-----GKKSVWNLTK----GERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKW 285 (309)
Q Consensus 225 ~~p~H~H~~~--------e~vyVls-----G~l~v~i~~~----~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~ 285 (309)
..|+|.|+.. |++|--+ |-+--.+..+ ++.+.++-||.+.+|+| -|...+.....++++|
T Consensus 165 SyPPH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~~~d~~~~V~~~d~V~iP~g-yHp~~aapGy~~Yylw 241 (261)
T PF04962_consen 165 SYPPHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDPQLDEHYVVRNGDAVLIPSG-YHPVVAAPGYDMYYLW 241 (261)
T ss_dssp S-SEEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTSSSEEEEEEETTEEEEESTT-B-SEEEEEESSEEEEE
T ss_pred CcCCccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCCCCcEEEEEECCCEEEeCCC-CCCcCcCCCcCcEEEE
Confidence 3599999982 3433332 3333111222 56899999999999999 4444443334444444
No 138
>PRK14314 glmM phosphoglucosamine mutase; Provisional
Probab=76.91 E-value=7.6 Score=38.85 Aligned_cols=41 Identities=27% Similarity=0.404 Sum_probs=34.3
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhH
Q 021654 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGA 54 (309)
Q Consensus 14 ki~i~~D~--~g~~lk~~l~~~l~~~g~ev~d~G~~~y~~~a~ 54 (309)
+|+||.|. ++-.+|+.+..-|.+.|.+|+|+|.-.-|-+..
T Consensus 44 ~VvVg~D~R~~s~~l~~a~~~gL~s~Gv~V~~~g~~ptP~~~~ 86 (450)
T PRK14314 44 RVVIGKDTRLSGYMFENALIAGLCSMGVDVLLVGPLPTPGIAF 86 (450)
T ss_pred cEEEEeCCCcChHHHHHHHHHHHHHCCCeEEEecccCCHHHHH
Confidence 69999997 555699999999999999999999665555444
No 139
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=76.27 E-value=7.4 Score=38.96 Aligned_cols=57 Identities=26% Similarity=0.357 Sum_probs=41.9
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCCceEEEEecC
Q 021654 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGT 78 (309)
Q Consensus 14 ki~i~~D~--~g~~lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~va~~v~~~~~~~~~~~gi~~Cgt 78 (309)
+|+||.|. .+-.||+.+..-|.+.|.+|+|+|.-.-|-+...+- . -.++-||.|.+|
T Consensus 41 ~V~Vg~D~R~ss~~l~~a~~~gL~s~G~~V~~~g~~pTP~~~~a~~----~----~~~~gGI~ITaS 99 (446)
T PRK14324 41 KILVGKDTRRSGYMIENALVSGLTSVGYNVIQIGPMPTPAIAFLTE----D----MRCDAGIMISAS 99 (446)
T ss_pred eEEEEeCCCcCHHHHHHHHHHHHHHCCCeEEEecCccHHHHHHHHh----h----cCCceEEEEEcC
Confidence 69999997 566799999999999999999999765555544442 2 234456665543
No 140
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=76.02 E-value=4.4 Score=33.55 Aligned_cols=47 Identities=34% Similarity=0.320 Sum_probs=34.4
Q ss_pred HHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCCceEEEEecCchh
Q 021654 29 ALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVG 81 (309)
Q Consensus 29 ~l~~~l~~~g~ev~d~G~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G 81 (309)
.|.+.|++.|+++...+. ++...+...+.+.+. ++|.-|+..|||.|
T Consensus 23 ~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~------~~DlvittGG~g~g 71 (133)
T cd00758 23 ALEALLEDLGCEVIYAGVVPDDADSIRAALIEASR------EADLVLTTGGTGVG 71 (133)
T ss_pred HHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHh------cCCEEEECCCCCCC
Confidence 556667889999988774 456667677666654 27888888888876
No 141
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=75.72 E-value=17 Score=33.71 Aligned_cols=70 Identities=23% Similarity=0.315 Sum_probs=53.0
Q ss_pred EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCe----------EEEecCCcEEEECCCCeEEEEEcCCceEEEEE
Q 021654 216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGE----------RFDLTVGDYLFTPAGDVHRVKYYEETEFFIKW 285 (309)
Q Consensus 216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~----------~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~ 285 (309)
.+.++.+|.....-.-..+-.+++++|++++.. ++. .++=.|-|++|+|.|..-++.+.++.++-+|.
T Consensus 32 ~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~--~g~~f~~iG~R~SvFe~~p~~~vYvp~g~~~~vtA~t~~~vAvC~ 109 (270)
T COG3718 32 RLLRLAAGESATEETGDRERCLVLVTGKATVSA--HGSTFGEIGTRMSVFERKPPDSVYVPAGSAFSVTATTDLEVAVCS 109 (270)
T ss_pred EEEEccCCCcccccCCCceEEEEEEeeeEEEee--ccchHhhcccccccccCCCCCeEEecCCceEEEEeecceEEEEEe
Confidence 467888888877666655556899999999953 232 24445779999999999999999998877665
Q ss_pred cC
Q 021654 286 DG 287 (309)
Q Consensus 286 ~~ 287 (309)
..
T Consensus 110 AP 111 (270)
T COG3718 110 AP 111 (270)
T ss_pred CC
Confidence 43
No 142
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=75.41 E-value=1.5 Score=41.55 Aligned_cols=21 Identities=33% Similarity=0.805 Sum_probs=18.7
Q ss_pred eEEEecCCcEEEECCCCeEEE
Q 021654 253 ERFDLTVGDYLFTPAGDVHRV 273 (309)
Q Consensus 253 ~~~~L~pGD~v~IP~g~~H~~ 273 (309)
..+.++|||++|||+|++|..
T Consensus 151 n~v~v~~Gd~i~ipaGt~HA~ 171 (302)
T TIGR00218 151 NRIKLKPGDFFYVPSGTPHAY 171 (302)
T ss_pred cccccCCCCEEEeCCCCcccc
Confidence 367899999999999999973
No 143
>COG3615 TehB Uncharacterized protein/domain, possibly involved in tellurite resistance [Inorganic ion transport and metabolism]
Probab=75.33 E-value=7.8 Score=30.89 Aligned_cols=61 Identities=23% Similarity=0.373 Sum_probs=40.3
Q ss_pred CeecCCceE--EEEEecEEEEEEeeCC------eEEEecCCcEEEECCCCeEEEEEcC-CceEEEEEcCccccccch
Q 021654 228 AHHHTFGHD--LVVLQGKKSVWNLTKG------ERFDLTVGDYLFTPAGDVHRVKYYE-ETEFFIKWDGRWDMFFDE 295 (309)
Q Consensus 228 ~H~H~~~e~--vyVlsG~l~v~i~~~~------~~~~L~pGD~v~IP~g~~H~~~n~g-d~~~~i~~~~~~~i~~~e 295 (309)
.|.-..+.+ +-|++|.+.+....+. ..+.... +.-++||...|++...+ |..+. +++|..+
T Consensus 29 kHnTk~G~w~kLsVl~G~vk~~~~~ee~~~~~e~~~~~ea-~~~~~~PQ~WHrVea~tDD~e~~------l~Fyc~~ 98 (99)
T COG3615 29 KHNTKPGTWGKLSVLKGAVKFLGLAEEGETEPEHVFSIEA-QFPVFPPQAWHRVEAMTDDAEFN------LSFYCAP 98 (99)
T ss_pred hccCCCCceeEEEEEeceeEEEEEcCCCCccceEEEeecC-CCCccChhHeeeeeecccccEEE------EEEEEcC
Confidence 344445555 7899999998543222 2355555 67789999999999766 55554 4666544
No 144
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=75.17 E-value=8.9 Score=38.34 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=34.3
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHH
Q 021654 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAE 55 (309)
Q Consensus 14 ki~i~~D~--~g~~lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~ 55 (309)
+|+||.|. ++-.||..+.+-|.+.|.+|+|+|.-.-|-+...
T Consensus 44 ~VvVg~D~R~ss~~l~~a~~~gL~s~G~~V~~~g~~pTP~~~~a 87 (448)
T PRK14315 44 RVVIGKDTRLSGYMIENALVAGFTSVGMDVLLLGPIPTPAVAML 87 (448)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHCCCeEEEeCCcccHHHHHH
Confidence 69999997 4455999999999999999999997655554443
No 145
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=74.87 E-value=6.8 Score=34.79 Aligned_cols=67 Identities=19% Similarity=0.196 Sum_probs=43.6
Q ss_pred CcEEEEEe---CcccHHHHHHHHHHHHhCCCcEEEecCCC-------------------------CcchhHHHHHHhhcC
Q 021654 12 PLKIIAGA---DSFGAELKDALVSHLRSLNIDVEDLGTSD-------------------------YYSIGAEVGRRVSSS 63 (309)
Q Consensus 12 ~mki~i~~---D~~g~~lk~~l~~~l~~~g~ev~d~G~~~-------------------------y~~~a~~va~~v~~~ 63 (309)
+-||++++ |.-.+. |+.+..+|+..||+|+|+|.+- ..+....+.+.+.+.
T Consensus 82 ~~~vl~~~~~gd~H~lG-~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~ 160 (201)
T cd02070 82 KGKVVIGTVEGDIHDIG-KNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEA 160 (201)
T ss_pred CCeEEEEecCCccchHH-HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHC
Confidence 45788885 333333 4778889999999999999741 123445666666651
Q ss_pred CCCCC-CceEEEEecCchhh
Q 021654 64 DSSDT-TTRGLVACGTGVGV 82 (309)
Q Consensus 64 ~~~~~-~~~gi~~CgtG~G~ 82 (309)
+. .+.-|+++|...-.
T Consensus 161 ---~~~~~~~i~vGG~~~~~ 177 (201)
T cd02070 161 ---GLRDKVKVMVGGAPVNQ 177 (201)
T ss_pred ---CCCcCCeEEEECCcCCH
Confidence 22 25678888877654
No 146
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=74.79 E-value=4.4 Score=33.80 Aligned_cols=49 Identities=27% Similarity=0.327 Sum_probs=38.1
Q ss_pred HHHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhh
Q 021654 28 DALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGV 82 (309)
Q Consensus 28 ~~l~~~l~~~g~ev~d~G~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~ 82 (309)
..|.+.|++.|++|.+.+. +++.++...+.+.+.+ .|.-|+.-|||.|-
T Consensus 20 ~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~------~D~VittGG~g~~~ 70 (144)
T PF00994_consen 20 PFLAALLEELGIEVIRYGIVPDDPDAIKEALRRALDR------ADLVITTGGTGPGP 70 (144)
T ss_dssp HHHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHHT------TSEEEEESSSSSST
T ss_pred HHHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhcc------CCEEEEcCCcCccc
Confidence 4567778889999999886 5788888888766665 47888888888763
No 147
>PRK14316 glmM phosphoglucosamine mutase; Provisional
Probab=73.98 E-value=8.7 Score=38.32 Aligned_cols=45 Identities=27% Similarity=0.341 Sum_probs=37.0
Q ss_pred cEEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHH
Q 021654 13 LKIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVG 57 (309)
Q Consensus 13 mki~i~~D~--~g~~lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~va 57 (309)
-+|+||.|. ++-.||+.+..-|.+.|.+|.|+|.-.-|.+...+-
T Consensus 41 ~~VvVg~D~R~ss~~l~~a~~~gL~s~G~~V~~~g~~pTP~~~~av~ 87 (448)
T PRK14316 41 PKVLVGRDTRISGDMLESALIAGLLSVGAEVMRLGVIPTPGVAYLTR 87 (448)
T ss_pred CeEEEEECCCcCHHHHHHHHHHHHHHCCCEEEEecccchHHHHHHHH
Confidence 369999997 566699999999999999999999766666555553
No 148
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=73.53 E-value=3.1 Score=41.17 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=19.7
Q ss_pred eEEEecCCcEEEECCCCeEEEE
Q 021654 253 ERFDLTVGDYLFTPAGDVHRVK 274 (309)
Q Consensus 253 ~~~~L~pGD~v~IP~g~~H~~~ 274 (309)
....|+|||++|+|+|++|.+.
T Consensus 237 N~v~l~pGeaifipAg~~HAyl 258 (389)
T PRK15131 237 NVVKLNPGEAMFLFAETPHAYL 258 (389)
T ss_pred eEEEeCCCCEEEeCCCCCeEEc
Confidence 4789999999999999999854
No 149
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.39 E-value=14 Score=28.90 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=39.6
Q ss_pred CceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceE
Q 021654 233 FGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEF 281 (309)
Q Consensus 233 ~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~ 281 (309)
..|+..|++|.+++.+...++..+..||..+.+|++.....+-...+..
T Consensus 41 ~~E~Mtvv~Gal~v~lpgs~dWq~~~~Ge~F~VpgnS~F~lqVaeat~Y 89 (94)
T COG3123 41 APEEMTVVSGALTVLLPGSDDWQVYTAGEVFNVPGNSEFDLQVAEATSY 89 (94)
T ss_pred CceEEEEEeeEEEEEcCCCcccEEecCCceEEcCCCCeEEEEEeeeeeh
Confidence 4577899999999987666788899999999999998877766554443
No 150
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=72.95 E-value=1.8 Score=34.24 Aligned_cols=16 Identities=44% Similarity=0.837 Sum_probs=13.4
Q ss_pred eEEEEecCchhhhhhh
Q 021654 71 RGLVACGTGVGVAIFA 86 (309)
Q Consensus 71 ~gi~~CgtG~G~~iaa 86 (309)
+-++.||+|+|.|+..
T Consensus 3 KIL~aCG~GvgSS~~i 18 (93)
T COG3414 3 KILAACGNGVGSSTMI 18 (93)
T ss_pred EEEEECCCCccHHHHH
Confidence 4578999999999765
No 151
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=72.30 E-value=19 Score=29.96 Aligned_cols=57 Identities=12% Similarity=0.032 Sum_probs=38.6
Q ss_pred EEEEEeCcccHHHHHHHHHHHHhCCCcEEEe--cCCCCcchhHHHHHHhhcCCCCCCCceEEEEec
Q 021654 14 KIIAGADSFGAELKDALVSHLRSLNIDVEDL--GTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACG 77 (309)
Q Consensus 14 ki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~--G~~~y~~~a~~va~~v~~~~~~~~~~~gi~~Cg 77 (309)
||+|++=|. ...|+++..+|++.|++++-+ +...=..+-.++-+.. ..++++|++=+
T Consensus 1 kVFIvhg~~-~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~------~~~~faIvl~T 59 (125)
T PF10137_consen 1 KVFIVHGRD-LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAA------DSVDFAIVLFT 59 (125)
T ss_pred CEEEEeCCC-HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHh------ccCCEEEEEEc
Confidence 689998864 599999999999999998854 3321111234444443 34789998743
No 152
>PRK14320 glmM phosphoglucosamine mutase; Provisional
Probab=71.61 E-value=12 Score=37.37 Aligned_cols=44 Identities=39% Similarity=0.363 Sum_probs=36.8
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHH
Q 021654 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVG 57 (309)
Q Consensus 14 ki~i~~D~--~g~~lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~va 57 (309)
+|+||.|. ++-.||+.+.+-|.+.|.+|+|+|.-.-|-+...+-
T Consensus 43 ~VvVg~D~R~ss~~l~~a~~~gL~s~G~~V~d~g~~pTP~~~~av~ 88 (443)
T PRK14320 43 FVIVGQDTRSSGGFLKFALVSGLNAAGIDVLDLGVVPTPVVAFMTV 88 (443)
T ss_pred eEEEEECCCcCHHHHHHHHHHHHHHCCCEEEEecccCchHHHHHHH
Confidence 59999996 566699999999999999999999776676666553
No 153
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism]
Probab=70.61 E-value=14 Score=37.25 Aligned_cols=58 Identities=26% Similarity=0.334 Sum_probs=41.8
Q ss_pred cEEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCCceEEEEecC
Q 021654 13 LKIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGT 78 (309)
Q Consensus 13 mki~i~~D~--~g~~lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~va~~v~~~~~~~~~~~gi~~Cgt 78 (309)
.+|+||.|. .+..++.++..-|.+.|++|+|+|...-|.++..+-.. .++-||.|.+|
T Consensus 45 ~~VvVG~D~R~ss~~~~~a~~~gl~~~G~~v~~~g~~pTP~~~f~~~~~--------~~~~gvmITAS 104 (464)
T COG1109 45 PKVVVGRDTRLSSEMLAAALAAGLTSAGIDVYDLGLVPTPAVAFATRKL--------GADAGVMITAS 104 (464)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHhc--------CCCeEEEEecC
Confidence 479999995 67789999999999999999999954334443333222 23357776654
No 154
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=70.30 E-value=22 Score=34.89 Aligned_cols=46 Identities=20% Similarity=0.204 Sum_probs=37.6
Q ss_pred CCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCc
Q 021654 232 TFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEET 279 (309)
Q Consensus 232 ~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~ 279 (309)
+.++++++-+|++++. ++=...+++|||+..||.|+.-++.-....
T Consensus 145 Dge~Livpq~G~l~l~--te~G~l~v~pgeiavIPRG~~frve~~~~~ 190 (427)
T COG3508 145 DGELLIVPQQGELRLK--TELGVLEVEPGEIAVIPRGTTFRVELKDGE 190 (427)
T ss_pred CCCEEEEeecceEEEE--EeeceEEecCCcEEEeeCCceEEEEecCCc
Confidence 3455589999999993 445789999999999999999998876544
No 155
>cd05799 PGM2 This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/ph
Probab=70.14 E-value=13 Score=37.59 Aligned_cols=42 Identities=17% Similarity=0.111 Sum_probs=34.5
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEec-CCCCcchhHH
Q 021654 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLG-TSDYYSIGAE 55 (309)
Q Consensus 14 ki~i~~D~--~g~~lk~~l~~~l~~~g~ev~d~G-~~~y~~~a~~ 55 (309)
+|+||.|. .+-.+++.+..-|.+.|.+|+|+| .-.-|-+...
T Consensus 47 ~V~Vg~D~R~~s~~~~~a~~~gL~s~Gi~V~~~g~~~ptP~~~~~ 91 (487)
T cd05799 47 GVVIGYDSRHNSREFAELTAAVLAANGIKVYLFDDLRPTPLLSFA 91 (487)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHHCCCEEEEeCCCCCCcHHHHH
Confidence 69999998 677799999999999999999999 5444444333
No 156
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=70.07 E-value=17 Score=33.55 Aligned_cols=66 Identities=11% Similarity=0.003 Sum_probs=46.2
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC---C-------CcchhHHHHHHhhcCCCCCCCceEEEEecCchhh
Q 021654 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS---D-------YYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGV 82 (309)
Q Consensus 13 mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~---~-------y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~ 82 (309)
-||+|.+=... ++-+.++++|++.|+||++++.. + -|+.....++.+.. ..--+|++++|++-.
T Consensus 121 ~RIalvTPY~~-~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~-----~~aDAifisCTnLrt 194 (239)
T TIGR02990 121 RRISLLTPYTP-ETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFD-----PDADALFLSCTALRA 194 (239)
T ss_pred CEEEEECCCcH-HHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcC-----CCCCEEEEeCCCchh
Confidence 48999998764 89999999999999999998432 1 12333445555533 334688888887654
Q ss_pred hh
Q 021654 83 AI 84 (309)
Q Consensus 83 ~i 84 (309)
.=
T Consensus 195 ~~ 196 (239)
T TIGR02990 195 AT 196 (239)
T ss_pred HH
Confidence 43
No 157
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=69.60 E-value=15 Score=32.96 Aligned_cols=69 Identities=14% Similarity=0.053 Sum_probs=41.2
Q ss_pred EEEcCCCcCCCeecCCceE---EEEE----ecEEEEEEe-e-----------C-----Ce--EEEecCCcEEEECCCCeE
Q 021654 218 VRFKAGSVEPAHHHTFGHD---LVVL----QGKKSVWNL-T-----------K-----GE--RFDLTVGDYLFTPAGDVH 271 (309)
Q Consensus 218 ~~l~pG~~~p~H~H~~~e~---vyVl----sG~l~v~i~-~-----------~-----~~--~~~L~pGD~v~IP~g~~H 271 (309)
....+|+....|.|+...+ +||- .|.+.+.-- . + .. ...-++|+.+.+|+...|
T Consensus 101 ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS~L~H 180 (201)
T TIGR02466 101 NILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFESWLRH 180 (201)
T ss_pred EEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECCCCce
Confidence 4566788888999988776 3433 244444210 0 0 00 123479999999999999
Q ss_pred EEEEcCC--ceEEEEEc
Q 021654 272 RVKYYEE--TEFFIKWD 286 (309)
Q Consensus 272 ~~~n~gd--~~~~i~~~ 286 (309)
++.-... ..+-|.|+
T Consensus 181 ~v~p~~~~~~RISiSFN 197 (201)
T TIGR02466 181 EVPPNESEEERISVSFN 197 (201)
T ss_pred ecCCCCCCCCEEEEEEe
Confidence 9854432 34444443
No 158
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=69.38 E-value=46 Score=28.24 Aligned_cols=58 Identities=21% Similarity=0.249 Sum_probs=42.9
Q ss_pred CCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEE---cCCceEEEEEcCccccccchh
Q 021654 232 TFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKY---YEETEFFIKWDGRWDMFFDED 296 (309)
Q Consensus 232 ~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n---~gd~~~~i~~~~~~~i~~~e~ 296 (309)
..--+.+|++|+-++.+ +++.+...+|+++..+.+.|=...- ..+.+++ .+.+.++++
T Consensus 22 y~p~i~~vlQG~K~~~~--g~~~~~Y~~g~~lv~~~~lPv~~~v~~AS~~~P~l-----~l~l~ld~~ 82 (155)
T PF06719_consen 22 YEPSICIVLQGSKRVHL--GDQVFEYDAGQYLVSSVDLPVESEVVEASPEEPYL-----ALSLELDPA 82 (155)
T ss_pred cCCeEEEEEeeeEEEEE--CCceEEecCCcEEEecCCCcEEEEEeeccCCCCEE-----EEEEEcCHH
Confidence 33445899999999954 5899999999999999999987654 3355654 124555554
No 159
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=69.09 E-value=20 Score=32.36 Aligned_cols=71 Identities=20% Similarity=0.116 Sum_probs=45.6
Q ss_pred CcEEEEEe---CcccHHHHHHHHHHHHhCCCcEEEecCCC-------------------------CcchhHHHHHHhhcC
Q 021654 12 PLKIIAGA---DSFGAELKDALVSHLRSLNIDVEDLGTSD-------------------------YYSIGAEVGRRVSSS 63 (309)
Q Consensus 12 ~mki~i~~---D~~g~~lk~~l~~~l~~~g~ev~d~G~~~-------------------------y~~~a~~va~~v~~~ 63 (309)
.-||++++ |.-... |+.+...|+.+||+|+|+|.+- .......+.+.+.+
T Consensus 88 ~~~vvl~t~~gd~HdiG-~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~~~~V~lS~~~~~~~~~~~~~i~~L~~- 165 (213)
T cd02069 88 KGKIVLATVKGDVHDIG-KNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHKADIIGLSGLLVPSLDEMVEVAEEMNR- 165 (213)
T ss_pred CCeEEEEeCCCchhHHH-HHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEccchhccHHHHHHHHHHHHh-
Confidence 34788885 443333 3778888999999999999851 11234555555655
Q ss_pred CCCCCCceEEEEecCchhhhhhhc
Q 021654 64 DSSDTTTRGLVACGTGVGVAIFAN 87 (309)
Q Consensus 64 ~~~~~~~~gi~~CgtG~G~~iaaN 87 (309)
...+--|+++|.++--..+.+
T Consensus 166 ---~~~~~~i~vGG~~~~~~~~~~ 186 (213)
T cd02069 166 ---RGIKIPLLIGGAATSRKHTAV 186 (213)
T ss_pred ---cCCCCeEEEEChhcCHHHHhh
Confidence 222556777777666555554
No 160
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=68.48 E-value=7.5 Score=34.13 Aligned_cols=119 Identities=21% Similarity=0.242 Sum_probs=73.3
Q ss_pred cEEEEEeCcc-cHHH----HHHHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhh---
Q 021654 13 LKIIAGADSF-GAEL----KDALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGV--- 82 (309)
Q Consensus 13 mki~i~~D~~-g~~l----k~~l~~~l~~~g~ev~d~G~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~--- 82 (309)
.+|+.-||.. .-+- =..|.++|++.||++.++-. +++..+-..+...+.+ . +|-.|+.-|||++-
T Consensus 10 ~~VvTVSd~r~~~~~~D~sG~~l~~~L~~ag~~~~~~~iV~D~~~~I~~~l~~~~~~----~-~DvvlttGGTG~t~RDv 84 (169)
T COG0521 10 IAVVTVSDRRSTGEYEDKSGPLLVELLEEAGHNVAAYTIVPDDKEQIRATLIALIDE----D-VDVVLTTGGTGITPRDV 84 (169)
T ss_pred EEEEEEecccccCCccccchhHHHHHHHHcCCccceEEEeCCCHHHHHHHHHHHhcC----C-CCEEEEcCCccCCCCcC
Confidence 5677788885 2121 15789999999999966543 4667777777777775 6 89999999999762
Q ss_pred ------hhhhcCCCce----EEEEeCC-HHHHHHhHh----hcCceEeEeccccCCHHHHHH-HHHHHHc
Q 021654 83 ------AIFANKNPGV----FATTCLT-PADALNTRS----INNCNVLAVSGMSTSKESAVE-ILDTWLK 136 (309)
Q Consensus 83 ------~iaaNK~~gi----raa~~~~-~~~A~~~r~----hN~aNvl~lg~~~~~~~~a~~-i~~~~l~ 136 (309)
.++==.+||. |.---.+ -.+|.++|. .|++=|++|++.--+..++.+ |+..-|.
T Consensus 85 TpEA~~~~~dKeipGFgE~fR~~S~~~~g~~AiLSRa~aGv~~~tlIf~LPGSp~Avr~~l~~iI~p~l~ 154 (169)
T COG0521 85 TPEATRPLFDKEIPGFGELFRRLSLEEIGPTAILSRAVAGVRNGTLIFNLPGSPGAVRDALEGIILPELD 154 (169)
T ss_pred CHHHHHHHHhccCCcHHHHHHHhhhhcCCCcEEEeeeeeEEeCCeEEEEcCCChhhHHHHHHHHHHHhcc
Confidence 2333344442 2111122 334444443 366667777776666666664 5554443
No 161
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.67 E-value=4.8 Score=40.84 Aligned_cols=57 Identities=25% Similarity=0.367 Sum_probs=43.3
Q ss_pred cCC-CcCCCeecCCceEEEEEecEEEEEEeeC--------------------C---eEEEecCCcEEEECCCCeEEEEEc
Q 021654 221 KAG-SVEPAHHHTFGHDLVVLQGKKSVWNLTK--------------------G---ERFDLTVGDYLFTPAGDVHRVKYY 276 (309)
Q Consensus 221 ~pG-~~~p~H~H~~~e~vyVlsG~l~v~i~~~--------------------~---~~~~L~pGD~v~IP~g~~H~~~n~ 276 (309)
+|| +.+++||-.-+-++.-++|+-...+.-. + -...|.|||.+|+|.|.+|+....
T Consensus 325 PagSqGfaPHyDdIeaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IHQA~t~ 404 (629)
T KOG3706|consen 325 PAGSQGFAPHYDDIEAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIHQADTP 404 (629)
T ss_pred CCCCCCCCCchhhhhhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhCCchHHhhcCCCcEEEecCcceeecccc
Confidence 445 4579999998888888999987654210 0 126799999999999999998765
Q ss_pred C
Q 021654 277 E 277 (309)
Q Consensus 277 g 277 (309)
.
T Consensus 405 ~ 405 (629)
T KOG3706|consen 405 A 405 (629)
T ss_pred c
Confidence 4
No 162
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=67.45 E-value=18 Score=36.11 Aligned_cols=43 Identities=28% Similarity=0.325 Sum_probs=35.5
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHH
Q 021654 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEV 56 (309)
Q Consensus 14 ki~i~~D~--~g~~lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~v 56 (309)
+|+||.|. .+-.+|+.+..-|.+.|++|.|+|.-.-|.++..+
T Consensus 38 ~VvVg~D~R~~s~~~~~a~~~gL~s~G~~V~~~g~~pTP~~~~~v 82 (443)
T cd03089 38 KVVVGRDGRLSSPELAAALIEGLLAAGCDVIDIGLVPTPVLYFAT 82 (443)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHcCCcEEEeCCcchHHHHHHH
Confidence 69999997 55569999999999999999999976666555443
No 163
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=66.82 E-value=9 Score=31.55 Aligned_cols=48 Identities=25% Similarity=0.294 Sum_probs=31.9
Q ss_pred HHHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCCceEEEEecCchh
Q 021654 28 DALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVG 81 (309)
Q Consensus 28 ~~l~~~l~~~g~ev~d~G~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G 81 (309)
..|.+.|++.|+++.+.+. ++...+...+.+.+. .+|.-|...|||.|
T Consensus 21 ~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~------~~dliittGG~g~g 70 (135)
T smart00852 21 PALAELLTELGIEVTRYVIVPDDKEAIKEALREALE------RADLVITTGGTGPG 70 (135)
T ss_pred HHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHh------CCCEEEEcCCCCCC
Confidence 3567778899999998875 344455555555543 36776666677755
No 164
>PRK09375 quinolinate synthetase; Provisional
Probab=66.50 E-value=22 Score=34.38 Aligned_cols=100 Identities=15% Similarity=0.170 Sum_probs=67.8
Q ss_pred CcccccCCCCCCcEEEEEeCcccHHHH-----HHHHHHHHhC-CCcEEEecCCCCcchhHHHHHHhhcCCCCCCCceEEE
Q 021654 1 MAENAAAAAPHPLKIIAGADSFGAELK-----DALVSHLRSL-NIDVEDLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLV 74 (309)
Q Consensus 1 ~~~~~~~~~~~~mki~i~~D~~g~~lk-----~~l~~~l~~~-g~ev~d~G~~~y~~~a~~va~~v~~~~~~~~~~~gi~ 74 (309)
|||++.-=.+. .+|.+=.-++|..|- +.|++..+++ +.-|+ .|.-...+| ++++ | +
T Consensus 79 MaEtAkIL~p~-k~VllP~~~AgC~mAd~~~~~~i~~lk~~~p~a~vV-----aYvNssaeV-KA~a--------D---~ 140 (319)
T PRK09375 79 MAETAKILSPE-KTVLLPDLEAGCSLADMCPAEEFRAFKEAHPDATVV-----TYVNTSAAV-KARA--------D---I 140 (319)
T ss_pred hhhhHHhcCCC-CeEECCCCCCCCcccccCCHHHHHHHHHHCCCCEEE-----EEeCCCHHH-HHhC--------C---e
Confidence 89996222222 256666667898865 4677777776 55555 243333333 3333 2 6
Q ss_pred EecCchhhhhhhcCCCceEEEEeCCHHHHHHhHhhcCceEeEec
Q 021654 75 ACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVS 118 (309)
Q Consensus 75 ~CgtG~G~~iaaNK~~giraa~~~~~~~A~~~r~hN~aNvl~lg 118 (309)
+|+|+.-.++.++.-++=.--.|-|.+-|+.+....+.+||.-.
T Consensus 141 ~cTSSnAl~iv~~~~~~~~IlF~PD~~Lg~~v~~l~~k~vilw~ 184 (319)
T PRK09375 141 VCTSSNAVKIVEALPQGKKILFLPDQHLGRYVAKQTGADIILWP 184 (319)
T ss_pred EEeCHHHHHHHhccCCCCeEEEeCchHHHHHHHHcCCCEEEccC
Confidence 79999999999966678888899999999999888777777543
No 165
>PLN02288 mannose-6-phosphate isomerase
Probab=66.20 E-value=5.6 Score=39.48 Aligned_cols=30 Identities=23% Similarity=0.225 Sum_probs=23.0
Q ss_pred eEEEecCCcEEEECCCCeEEEEEcCCceEE
Q 021654 253 ERFDLTVGDYLFTPAGDVHRVKYYEETEFF 282 (309)
Q Consensus 253 ~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~ 282 (309)
....|+||+.+|+|+|.+|.+..-.-.+++
T Consensus 251 N~v~L~PGeaifl~ag~~HAYl~G~~vE~M 280 (394)
T PLN02288 251 NYVKLNPGEALYLGANEPHAYLSGECIECM 280 (394)
T ss_pred ceEecCCCCEEEecCCCCceecCCCeEEee
Confidence 478999999999999999986543333333
No 166
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=65.76 E-value=16 Score=31.40 Aligned_cols=82 Identities=11% Similarity=0.077 Sum_probs=54.9
Q ss_pred hhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCCCce--EEEEeCCHHHHHHhHhhcCceEeEeccc-------cC
Q 021654 52 IGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKNPGV--FATTCLTPADALNTRSINNCNVLAVSGM-------ST 122 (309)
Q Consensus 52 ~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~~gi--raa~~~~~~~A~~~r~hN~aNvl~lg~~-------~~ 122 (309)
+|.++++.|.. | -.++-++|-=..-.|..++.- .-.+.++...|...+++++.+|+++||. ++
T Consensus 9 IA~~A~~~I~~----~----~~Ifld~GtT~~~la~~L~~~~~ltVvTnsl~ia~~l~~~~~~~vi~~GG~~~~~~~~~~ 80 (161)
T PF00455_consen 9 IARKAASLIED----G----DTIFLDSGTTTLELAKYLPDKKNLTVVTNSLPIANELSENPNIEVILLGGEVNPKSLSFV 80 (161)
T ss_pred HHHHHHHhCCC----C----CEEEEECchHHHHHHHHhhcCCceEEEECCHHHHHHHHhcCceEEEEeCCEEEcCCCcEE
Confidence 56777777765 2 234445555566666666665 4556678888999999999999999998 45
Q ss_pred CHHHHHHHHHHHHcCCCCC
Q 021654 123 SKESAVEILDTWLKTPFKA 141 (309)
Q Consensus 123 ~~~~a~~i~~~~l~~~f~~ 141 (309)
|+.....+=+-.++.-|-+
T Consensus 81 G~~a~~~l~~~~~d~afi~ 99 (161)
T PF00455_consen 81 GPIALEALRQFRFDKAFIG 99 (161)
T ss_pred CchHHHHHHhhccceEEec
Confidence 6655555544444555544
No 167
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=65.57 E-value=10 Score=31.90 Aligned_cols=47 Identities=30% Similarity=0.374 Sum_probs=33.6
Q ss_pred HHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCCceEEEEecCchh
Q 021654 29 ALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVG 81 (309)
Q Consensus 29 ~l~~~l~~~g~ev~d~G~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G 81 (309)
.|.+.|++.|++|...+. ++..++...+.+.+. .+|.-|+-.|||.|
T Consensus 31 ~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~------~~DliIttGG~g~g 79 (144)
T TIGR00177 31 LLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVD------EADVVLTTGGTGVG 79 (144)
T ss_pred HHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHh------CCCEEEECCCCCCC
Confidence 556667788999999985 455566666666543 36777777777776
No 168
>PRK14318 glmM phosphoglucosamine mutase; Provisional
Probab=65.25 E-value=20 Score=35.79 Aligned_cols=44 Identities=23% Similarity=0.253 Sum_probs=36.0
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHH
Q 021654 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVG 57 (309)
Q Consensus 14 ki~i~~D~--~g~~lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~va 57 (309)
+|+||.|. ++-.||+.+.+-|.+.|.+|+|+|.-.-|-+...+-
T Consensus 46 ~VvVg~D~R~ss~~l~~a~~~gL~s~G~~V~~~g~~pTP~~~~av~ 91 (448)
T PRK14318 46 VAVVGRDPRASGEFLEAAVSAGLASAGVDVLRVGVLPTPAVAYLTA 91 (448)
T ss_pred eEEEEeCCCcCHHHHHHHHHHHHHHCCCEEEEecccCchHHHHHHH
Confidence 59999997 555699999999999999999999766665555443
No 169
>PRK14321 glmM phosphoglucosamine mutase; Provisional
Probab=65.08 E-value=57 Score=32.63 Aligned_cols=93 Identities=26% Similarity=0.336 Sum_probs=58.7
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCCCc
Q 021654 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKNPG 91 (309)
Q Consensus 14 ki~i~~D~--~g~~lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~~g 91 (309)
+|+||.|. .+-.+|+.+..-|.+.|.+|+|+|.-.-|-+...+- . ..++-||.|.+|
T Consensus 38 ~VvVg~D~R~~s~~l~~a~~~gL~s~G~~V~~~g~~pTP~~~~av~----~----~~~~gGI~ITaS------------- 96 (449)
T PRK14321 38 KVVVGKDTRTSSEMLKNALISGLLSTGVDVIDIGLAPTPLTGFAIK----L----YNADAGVTITAS------------- 96 (449)
T ss_pred cEEEEeCCCCChHHHHHHHHHHHHHCCCeEEEeCCcCCcHHHHHHH----h----cCCCeEEEEEeC-------------
Confidence 69999997 555699999999999999999999765565544333 2 234456655433
Q ss_pred eEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCC
Q 021654 92 VFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPF 139 (309)
Q Consensus 92 iraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f 139 (309)
|||.. .|.--++.-.+..+..+..++|-+.+...+|
T Consensus 97 ------HnP~~------~nGiK~~~~~G~~i~~~~~~~ie~~~~~~~~ 132 (449)
T PRK14321 97 ------HNPPE------YNGIKVWQRNGMAYTPEMENELERIIESGNF 132 (449)
T ss_pred ------CCCHH------HCcEEEECCCCCcCCHHHHHHHHHHHhcccc
Confidence 33332 4444444445555555555555444444444
No 170
>cd03087 PGM_like1 This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=64.90 E-value=17 Score=36.10 Aligned_cols=44 Identities=30% Similarity=0.414 Sum_probs=36.2
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHH
Q 021654 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVG 57 (309)
Q Consensus 14 ki~i~~D~--~g~~lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~va 57 (309)
+|+||.|. ++-.+|+.+.+-|.+.|.+|.|+|.-.-|.+...+.
T Consensus 35 ~VvVg~D~R~~s~~l~~a~~~gL~~~G~~V~~~g~~~tP~~~~~v~ 80 (439)
T cd03087 35 TVVVGRDTRTSGPMLKNAVIAGLLSAGCDVIDIGIVPTPALQYAVR 80 (439)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHCCCeEEEcCccChHHHHHHHH
Confidence 69999996 566799999999999999999999766665555443
No 171
>PF10941 DUF2620: Protein of unknown function DUF2620; InterPro: IPR021238 This is a bacterial family of proteins with unknown function.
Probab=64.73 E-value=80 Score=26.08 Aligned_cols=60 Identities=25% Similarity=0.288 Sum_probs=39.8
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhh
Q 021654 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAI 84 (309)
Q Consensus 13 mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~i 84 (309)
|||+||- -==|+++.+.+++.+-+-+.+-. -.| ...|.+|.+ |++|+=|=-|-||-|=++
T Consensus 1 ~kIvigG----ql~K~ei~~~i~~~~~~~~ev~i--~sD--meAAm~vK~----G~aDYY~GACnTGgGgAL 60 (117)
T PF10941_consen 1 MKIVIGG----QLDKEEIAELIEKLGPGKVEVTI--KSD--MEAAMAVKS----GQADYYLGACNTGGGGAL 60 (117)
T ss_pred CeEEEcc----ccCHHHHHHHHHHHCCCcEEEEE--ech--HHHHHHhhc----CCcCEeEeecCCCccHHH
Confidence 6899874 23367777777766533222211 122 567888888 999999999999966443
No 172
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=64.40 E-value=16 Score=26.58 Aligned_cols=64 Identities=20% Similarity=0.243 Sum_probs=38.5
Q ss_pred EEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCe----EEEecCCcEEEECC-----CCeEEEEEcCCceEE
Q 021654 219 RFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGE----RFDLTVGDYLFTPA-----GDVHRVKYYEETEFF 282 (309)
Q Consensus 219 ~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~----~~~L~pGD~v~IP~-----g~~H~~~n~gd~~~~ 282 (309)
++++|...-..-.+...+++|++|.+.+.....+. ...+.+|+.+-..+ ...+.+.+.+++.++
T Consensus 3 ~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~ 75 (91)
T PF00027_consen 3 TYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLTGKPSPFTVIALTDSEVL 75 (91)
T ss_dssp EESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHHTSBBSSEEEESSSEEEE
T ss_pred EECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeecCCCccEEEEEEccCEEEE
Confidence 45555544333333567799999999996543333 35788998764332 234456666666654
No 173
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=64.22 E-value=4 Score=30.85 Aligned_cols=18 Identities=28% Similarity=0.630 Sum_probs=13.6
Q ss_pred EEEEecCchhhhhhh-cCC
Q 021654 72 GLVACGTGVGVAIFA-NKN 89 (309)
Q Consensus 72 gi~~CgtG~G~~iaa-NK~ 89 (309)
.+++||+|+|+|... +|+
T Consensus 2 ilvvC~~G~~tS~ll~~kl 20 (86)
T cd05563 2 ILAVCGSGLGSSLMLKMNV 20 (86)
T ss_pred EEEECCCCccHHHHHHHHH
Confidence 589999999997644 343
No 174
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=62.68 E-value=23 Score=35.61 Aligned_cols=43 Identities=23% Similarity=0.213 Sum_probs=35.9
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHH
Q 021654 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEV 56 (309)
Q Consensus 14 ki~i~~D~--~g~~lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~v 56 (309)
+|+||.|. ++-.||..+..-|.+.|.+|+|+|.-.-|-+...+
T Consensus 57 ~VvVG~D~R~ss~~l~~a~~~gL~s~Gv~V~~~g~~pTP~~~~av 101 (465)
T PRK14317 57 PVLIGQDSRNSSDMLAMALAAGLTAAGREVWHLGLCPTPAVAYLT 101 (465)
T ss_pred cEEEEECCCCCHHHHHHHHHHHHHHCCCeEEEecccCcHHHHHHH
Confidence 59999997 56679999999999999999999976666555544
No 175
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=61.91 E-value=27 Score=34.65 Aligned_cols=45 Identities=29% Similarity=0.344 Sum_probs=37.0
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHHH
Q 021654 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGR 58 (309)
Q Consensus 14 ki~i~~D~--~g~~lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~va~ 58 (309)
+|+||.|. ++-.||+.+..-|.+.|.+|+|+|.-.-|.+...+-.
T Consensus 39 ~VvVg~D~R~ss~~l~~a~~~gL~s~G~~V~~~g~~pTP~~~~av~~ 85 (434)
T cd05802 39 KVLIGKDTRISGYMLESALAAGLTSAGVDVLLLGVIPTPAVAYLTRK 85 (434)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHCCCcEEEEcccchHHHHHHHHH
Confidence 69999997 5556999999999999999999997666666555543
No 176
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=61.87 E-value=21 Score=33.79 Aligned_cols=45 Identities=18% Similarity=0.179 Sum_probs=36.9
Q ss_pred eEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCce
Q 021654 235 HDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE 280 (309)
Q Consensus 235 e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~ 280 (309)
-.+++.+|.+++.. .++++..+.++..+++|.+..|.+.|.....
T Consensus 40 ~li~v~~G~~~i~~-~~g~~l~i~~p~~~~~p~~~~~~~~~~~~~~ 84 (291)
T PRK15186 40 VLIKLTTGKISITT-SSGEYITASGPMLIFLAKDQTIHITMEETHE 84 (291)
T ss_pred EEEEeccceEEEEe-CCCceEEeCCCeEEEEeCCcEEEEEecccCC
Confidence 35889999999952 2456689999999999999999999987443
No 177
>PRK03670 competence damage-inducible protein A; Provisional
Probab=61.75 E-value=78 Score=29.43 Aligned_cols=81 Identities=16% Similarity=0.113 Sum_probs=52.7
Q ss_pred HHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCCCceEEEEeCCHHHHHHh
Q 021654 29 ALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNT 106 (309)
Q Consensus 29 ~l~~~l~~~g~ev~d~G~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~~giraa~~~~~~~A~~~ 106 (309)
.|.+.|.+.|++|....+ ++..++...+.+.+.+ .+|.-|+..|+|.+ +|-.+.+-.
T Consensus 24 ~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~-----~~DlVIttGGlGpt----------------~dD~T~eav 82 (252)
T PRK03670 24 FIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSR-----KPEVLVISGGLGPT----------------HDDVTMLAV 82 (252)
T ss_pred HHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhC-----CCCEEEECCCccCC----------------CCCchHHHH
Confidence 577778999999988775 3455566666555442 35655555444422 444444444
Q ss_pred HhhcCceEeEeccccCCHHHHHHHHHHHHcC
Q 021654 107 RSINNCNVLAVSGMSTSKESAVEILDTWLKT 137 (309)
Q Consensus 107 r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~ 137 (309)
++ ++|-.++--+.+.+.++.|+..
T Consensus 83 a~-------a~g~~l~~~~e~~~~i~~~~~~ 106 (252)
T PRK03670 83 AE-------ALGRELVLCEDCLERIKEFYEE 106 (252)
T ss_pred HH-------HhCCCCcCCHHHHHHHHHHHHH
Confidence 44 3677788889999999999864
No 178
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=61.68 E-value=56 Score=28.94 Aligned_cols=37 Identities=30% Similarity=0.375 Sum_probs=27.1
Q ss_pred cEEEEEe---CcccHHHHHHHHHHHHhCCCcEEEecCCCCc
Q 021654 13 LKIIAGA---DSFGAELKDALVSHLRSLNIDVEDLGTSDYY 50 (309)
Q Consensus 13 mki~i~~---D~~g~~lk~~l~~~l~~~g~ev~d~G~~~y~ 50 (309)
-||++++ |.-.+.+ +.+...|+.+||+|+|+|.+--+
T Consensus 85 ~~vv~~t~~gd~H~lG~-~~v~~~l~~~G~~vi~LG~~vp~ 124 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGK-NIVVTMLRANGFDVIDLGRDVPI 124 (197)
T ss_pred CeEEEEeCCCchhHHHH-HHHHHHHHhCCcEEEECCCCCCH
Confidence 4788886 3333333 67888899999999999986443
No 179
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=61.43 E-value=22 Score=35.59 Aligned_cols=67 Identities=12% Similarity=0.075 Sum_probs=49.6
Q ss_pred EEEEeCc--------ccHHHHHHHHHHHHhCCCcEEEecCCC-CcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhh
Q 021654 15 IIAGADS--------FGAELKDALVSHLRSLNIDVEDLGTSD-YYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIF 85 (309)
Q Consensus 15 i~i~~D~--------~g~~lk~~l~~~l~~~g~ev~d~G~~~-y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~ia 85 (309)
++.++++ ...+..+.+.+.|++.|++|++.+.-+ .++-+.++++...+ ..+|--|+.+.|+--..++
T Consensus 5 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~vv~~~~~~~~~~~~~~~~~~~~~----~~~d~ii~~~~tf~~~~~~ 80 (452)
T cd00578 5 FVTGSQHLYGEELLEQVEEYAREVADLLNELPVEVVDKPEVTGTPDEARKAAEEFNE----ANCDGLIVWMHTFGPAKMW 80 (452)
T ss_pred EEEecccccChhHHHHHHHHHHHHHHHHhcCCceEEecCcccCCHHHHHHHHHHHhh----cCCcEEEEcccccccHHHH
Confidence 4556777 233467789999999999999999766 66777888888887 5677777777777555443
No 180
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=61.24 E-value=27 Score=34.86 Aligned_cols=44 Identities=25% Similarity=0.269 Sum_probs=35.9
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHH
Q 021654 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVG 57 (309)
Q Consensus 14 ki~i~~D~--~g~~lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~va 57 (309)
+|+||.|. ++-.||+.+..-|.+.|.+|+|+|.-.-|.+...+.
T Consensus 41 ~VvVg~D~R~ss~~l~~a~~~gL~s~Gv~V~~~g~~pTP~~~~a~~ 86 (443)
T PRK10887 41 KVLIGKDTRISGYMLESALEAGLAAAGVDVLLTGPMPTPAVAYLTR 86 (443)
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHHCCCeEEEECCcChHHHHHHHH
Confidence 59999997 556699999999999999999999766665555443
No 181
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=60.78 E-value=29 Score=34.70 Aligned_cols=66 Identities=15% Similarity=0.134 Sum_probs=46.4
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEe-cCCCCcchhHHHHHH------hhcCCCCCCCceEEEEecCc
Q 021654 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDL-GTSDYYSIGAEVGRR------VSSSDSSDTTTRGLVACGTG 79 (309)
Q Consensus 14 ki~i~~D~--~g~~lk~~l~~~l~~~g~ev~d~-G~~~y~~~a~~va~~------v~~~~~~~~~~~gi~~CgtG 79 (309)
+|+||.|. ++-.||+++..-|.+.|.+|+|+ |.-.-|-+...+... +.+.+.+-...-||-++..+
T Consensus 41 ~Vvvg~D~R~ss~~l~~a~~~gL~s~G~~V~~~~g~~pTP~~~~a~~~~~~~gGI~ITaSHnp~~~ngiK~~~~~ 115 (461)
T cd05800 41 GVVVGYDTRFLSEEFARAVAEVLAANGIDVYLSDRPVPTPAVSWAVKKLGAAGGVMITASHNPPEYNGVKVKPAF 115 (461)
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHCCCEEEEcCCCCCchHHHHHHHHhCCCeeEEEccCCCCcccCeEEEeCCC
Confidence 69999996 46779999999999999999999 677667655555543 11111123345688886543
No 182
>PRK14322 glmM phosphoglucosamine mutase; Provisional
Probab=60.38 E-value=23 Score=35.11 Aligned_cols=42 Identities=29% Similarity=0.369 Sum_probs=34.8
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHH
Q 021654 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAE 55 (309)
Q Consensus 14 ki~i~~D~--~g~~lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~ 55 (309)
+|+||.|. ++-.||..+..-|.+.|.+|+|+|.-.-|-+...
T Consensus 39 ~VvVg~D~R~ss~~l~~a~~~gL~s~G~~V~~~g~~pTP~~~~a 82 (429)
T PRK14322 39 KVIVGKDTRVSGDSLEAAISAGLTSMGVDVLLCGILPTPAVALL 82 (429)
T ss_pred cEEEEeCCCcCHHHHHHHHHHHHHHCCCeEEEecCcCHHHHHHH
Confidence 49999996 5666999999999999999999997665655543
No 183
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=60.38 E-value=24 Score=35.14 Aligned_cols=44 Identities=30% Similarity=0.399 Sum_probs=35.9
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHH
Q 021654 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVG 57 (309)
Q Consensus 14 ki~i~~D~--~g~~lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~va 57 (309)
+|+||.|- .+-.+|+.+.+-|.+.|.+|.|+|.-.-|.+...+.
T Consensus 39 ~Vvvg~D~R~~s~~l~~a~~~gL~~~G~~V~~~g~~pTP~~~~a~~ 84 (445)
T cd05803 39 KIVVGRDGRPSGPMLEKIVIGALLACGCDVIDLGIAPTPTVQVLVR 84 (445)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHCCCeEEEeCCCCchHHHHHHH
Confidence 69999996 555699999999999999999999766665554443
No 184
>PF09391 DUF2000: Protein of unknown function (DUF2000); InterPro: IPR018988 This is a family of proteins of unknown function. The structure of one of the proteins in this family has been shown to adopt an alpha beta fold. ; PDB: 2GAX_A.
Probab=60.26 E-value=16 Score=30.70 Aligned_cols=57 Identities=23% Similarity=0.282 Sum_probs=34.1
Q ss_pred EEEEeCcccHHHHHHHHHHHHhCCCcEEEecC-----CCCcchhHHHHHHhhcCCCCCCCceEEEEecC
Q 021654 15 IIAGADSFGAELKDALVSHLRSLNIDVEDLGT-----SDYYSIGAEVGRRVSSSDSSDTTTRGLVACGT 78 (309)
Q Consensus 15 i~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~-----~~y~~~a~~va~~v~~~~~~~~~~~gi~~Cgt 78 (309)
+++.+| +-.|++...+.+.. +..++||-. .+|.+|..++++.-.+ .-.-.||.+||.
T Consensus 57 pIL~a~--~~~L~~l~~~a~~~-~i~~~~F~~~aq~~~~y~e~~~~~~~~~~~----~l~y~Gi~L~G~ 118 (133)
T PF09391_consen 57 PILKAN--SEQLRELRQKALER-EITVVDFTDEAQSTGHYEEYRAAVAATPEE----DLEYVGIALFGP 118 (133)
T ss_dssp EEEEE---HHHHHHHHHHHHHT-T---EEEEGGGGG---HHHHHHHHTT--TT----T--EEEEEEEEE
T ss_pred EEEEcC--HHHHHHHHHHHHHC-CCeEEeChHHHhhCCCHHHHHHHHhcCChh----hccEEEEEEECC
Confidence 556663 45677777776666 999999954 4798998777776544 445579999984
No 185
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=59.32 E-value=28 Score=32.99 Aligned_cols=65 Identities=14% Similarity=0.195 Sum_probs=40.8
Q ss_pred EEEcCCC---cCCCeecCCc-eE-EE--EEecEEEEEEe-eCCeE--EEecCCcEEEECCCCeEEEEEcCCceEE
Q 021654 218 VRFKAGS---VEPAHHHTFG-HD-LV--VLQGKKSVWNL-TKGER--FDLTVGDYLFTPAGDVHRVKYYEETEFF 282 (309)
Q Consensus 218 ~~l~pG~---~~p~H~H~~~-e~-vy--VlsG~l~v~i~-~~~~~--~~L~pGD~v~IP~g~~H~~~n~gd~~~~ 282 (309)
..+.||+ ..|+|.|+.. |. +| +-.++..+... .-+++ ..++-+|.+.+|+..+|+--.+++-.|.
T Consensus 180 tvltPGg~WSSyPPHkHDrr~E~YlYf~l~~~qrV~h~mG~pdETrh~~v~n~~aVisP~wsih~g~gt~~y~fi 254 (276)
T PRK00924 180 TELEPGSVWNTMPCHTHDRRMEVYFYFDMPEDARVFHFMGEPQETRHIVVHNEQAVISPSWSIHSGVGTSNYTFI 254 (276)
T ss_pred EEEcCCCCCCCCCCccCCCCcceEEEEEcCCCceEEecCCCccceeeEEEECCCEEECCCcceecCcCccccEEE
Confidence 4556765 3599999853 43 22 22232222211 12344 8899999999999999998766655554
No 186
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=58.28 E-value=38 Score=30.99 Aligned_cols=56 Identities=11% Similarity=0.119 Sum_probs=41.5
Q ss_pred EEEEEeCcccHHHHHHHHHHHHhCCCcEEEecC---CC-------CcchhHHHHHHhhcCCCCCCCceEEEE
Q 021654 14 KIIAGADSFGAELKDALVSHLRSLNIDVEDLGT---SD-------YYSIGAEVGRRVSSSDSSDTTTRGLVA 75 (309)
Q Consensus 14 ki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~---~~-------y~~~a~~va~~v~~~~~~~~~~~gi~~ 75 (309)
||.+..-.. -++.+..++||++.|+||+|+-. .| -|-...++|+.+.. +.+| ||+|
T Consensus 120 ri~vlTPY~-~evn~~e~ef~~~~Gfeiv~~~~Lgi~dn~eigr~~P~~~y~lAk~~~~----~~~D-aiFi 185 (238)
T COG3473 120 RISVLTPYI-DEVNQREIEFLEANGFEIVDFKGLGITDNLEIGRQEPWAVYRLAKEVFT----PDAD-AIFI 185 (238)
T ss_pred eEEEeccch-hhhhhHHHHHHHhCCeEEEEeeccCCcccchhcccChHHHHHHHHHhcC----CCCC-eEEE
Confidence 677777665 47889999999999999999843 22 35566888999887 5655 4443
No 187
>PRK14319 glmM phosphoglucosamine mutase; Provisional
Probab=58.23 E-value=30 Score=34.37 Aligned_cols=41 Identities=29% Similarity=0.314 Sum_probs=34.9
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhH
Q 021654 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGA 54 (309)
Q Consensus 14 ki~i~~D~--~g~~lk~~l~~~l~~~g~ev~d~G~~~y~~~a~ 54 (309)
+|+||.|. ++-.||+++..-|.+.|.+|+|+|.-.-|-+..
T Consensus 36 ~V~Vg~D~R~ss~~l~~a~~~gL~s~G~~V~d~g~~pTP~~~~ 78 (430)
T PRK14319 36 KIFIAKDTRASGDMLEAALVAGITSAGADVYRCGVLPTPALAL 78 (430)
T ss_pred cEEEEeCCCCChHHHHHHHHHHHHHCCCeEEEeCCcCcHHHHH
Confidence 59999996 566799999999999999999999766665544
No 188
>PRK14323 glmM phosphoglucosamine mutase; Provisional
Probab=58.12 E-value=32 Score=34.26 Aligned_cols=44 Identities=27% Similarity=0.328 Sum_probs=36.4
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHH
Q 021654 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVG 57 (309)
Q Consensus 14 ki~i~~D~--~g~~lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~va 57 (309)
+|+||.|. ++-.||+.+..-|.+.|.+|.|+|.-.-|-+...+-
T Consensus 44 ~VvVg~D~R~ss~~l~~a~~~gL~s~G~~V~~~g~~pTP~~~~av~ 89 (440)
T PRK14323 44 VVLLGKDTRQSGDMLEAALAAGLTSRGVRVEHLGVLPTPGVSYLTR 89 (440)
T ss_pred eEEEEeCCCccHHHHHHHHHHHHHHCCCEEEEecccChHHHHHHHH
Confidence 59999997 455699999999999999999999776666555543
No 189
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=57.52 E-value=33 Score=34.15 Aligned_cols=44 Identities=27% Similarity=0.345 Sum_probs=35.8
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHH
Q 021654 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVG 57 (309)
Q Consensus 14 ki~i~~D~--~g~~lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~va 57 (309)
+|+||.|. ++-.+|+.+..-|.+.|.+|+|+|.-.-|-+...+-
T Consensus 40 ~V~Vg~D~R~~s~~l~~a~~~gL~s~G~~V~~~g~~pTP~~~~av~ 85 (443)
T TIGR01455 40 RVVIGKDTRLSGYMLENALAAGLNSAGVDVLLLGPLPTPAVAYLTR 85 (443)
T ss_pred eEEEEeCCCcChHHHHHHHHHHHHHCCCeEEEeCCcCcHHHHHHHH
Confidence 49999997 566699999999999999999999766565555443
No 190
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=57.22 E-value=44 Score=28.89 Aligned_cols=66 Identities=18% Similarity=0.161 Sum_probs=38.9
Q ss_pred EEEEcCCCcCCCeecCCceEEEEEecEEEEEEee-CCe---EEEecCCcEEEE----CCCCeE--EEEEcCCceEE
Q 021654 217 IVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLT-KGE---RFDLTVGDYLFT----PAGDVH--RVKYYEETEFF 282 (309)
Q Consensus 217 ~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~-~~~---~~~L~pGD~v~I----P~g~~H--~~~n~gd~~~~ 282 (309)
...+++|...-..-.+...+++|++|.+.+.... +++ ...+.|||++-. ....++ .+.+.+++.++
T Consensus 22 ~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~a~~~~~v~ 97 (211)
T PRK11753 22 IHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVA 97 (211)
T ss_pred EEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCceEEEEEcCcEEEE
Confidence 3456666655333344566799999999985432 233 256789998733 222233 45566666554
No 191
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=56.21 E-value=48 Score=30.28 Aligned_cols=61 Identities=18% Similarity=0.195 Sum_probs=44.1
Q ss_pred cCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceE
Q 021654 221 KAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEF 281 (309)
Q Consensus 221 ~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~ 281 (309)
+-|+.-..-+|..+....||+|+..-+....-+....+|||..+.|.|....++-..++=+
T Consensus 107 pvgTeGhsGrh~ad~y~tIL~G~~~~~~~g~~~~evy~pGd~~~l~rg~a~~y~m~~~tw~ 167 (216)
T PF04622_consen 107 PVGTEGHSGRHWADDYFTILSGEQWAWSPGSLEPEVYKPGDSHHLPRGEAKQYQMPPGTWA 167 (216)
T ss_pred cCCCCCCCcceEeeeEEEEEEEEEEEEcCCCCCceEeccCCEEEecCceEEEEEeCCCeEE
Confidence 3344433334555666889999999875433456888999999999999999988765444
No 192
>cd03088 ManB ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In Mycobacterium tuberculosis, the causative agent of tuberculosis, PMM is involved in the biosynthesis of mannosylated lipoglycans that participate in the association of mycobacteria with host macrophage phagocytic receptors. ManB belongs to the the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrall
Probab=55.75 E-value=37 Score=34.08 Aligned_cols=64 Identities=17% Similarity=0.173 Sum_probs=44.5
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHh-----hcCCCCCCCceEEEEec
Q 021654 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRV-----SSSDSSDTTTRGLVACG 77 (309)
Q Consensus 14 ki~i~~D~--~g~~lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~va~~v-----~~~~~~~~~~~gi~~Cg 77 (309)
.|+||.|. .+-.+|+.+.+-|.+.|.+|.|+|...-|-+...+...- ...+.+.+..-||-+++
T Consensus 38 ~VvVG~D~R~~s~~l~~a~~~gL~~~Gv~V~~~g~~pTP~~~~a~~~~~~ggI~ITaSHnp~~~nGiK~~~ 108 (459)
T cd03088 38 TVAVGRDLRPSSPRIAAACAAALRDAGFRVVDCGAVPTPALALYAMKRGAPAIMVTGSHIPADRNGLKFYR 108 (459)
T ss_pred eEEEEeCCCcchHHHHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHcCCcEEEEeCCCCCCCCCCEEEEC
Confidence 59999996 566699999999999999999999766565555444331 11111334455777765
No 193
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=55.22 E-value=56 Score=26.90 Aligned_cols=47 Identities=11% Similarity=0.227 Sum_probs=33.9
Q ss_pred HHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCCceEEEEecCc
Q 021654 28 DALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTG 79 (309)
Q Consensus 28 ~~l~~~l~~~g~ev~d~G~~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG 79 (309)
..++++.+++|.+++-+-..+|.|+-.++-..... ..+.-++++++|
T Consensus 49 ~~~~~~~~~~~~~~~~~p~kD~TD~e~Al~~~~~~-----~~~~i~v~Ga~G 95 (123)
T PF04263_consen 49 PEVLEFYKSKGVEIIHFPEKDYTDLEKALEYAIEQ-----GPDEIIVLGALG 95 (123)
T ss_dssp HHHHHHHHHCTTEEEEE-STTS-HHHHHHHHHHHT-----TTSEEEEES-SS
T ss_pred hHHHHHHHhhccceecccccccCHHHHHHHHHHHC-----CCCEEEEEecCC
Confidence 35888999999999988867899876666666443 556888888888
No 194
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=54.72 E-value=19 Score=36.04 Aligned_cols=41 Identities=20% Similarity=0.283 Sum_probs=34.6
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhH
Q 021654 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGA 54 (309)
Q Consensus 14 ki~i~~D~--~g~~lk~~l~~~l~~~g~ev~d~G~~~y~~~a~ 54 (309)
+|+||.|. .+-.+|+++.+-|.+.|.+|.|+|.-.-|-+..
T Consensus 37 ~VvVg~D~R~~s~~l~~a~~~gL~s~G~~V~~lg~~pTP~~~~ 79 (445)
T PRK09542 37 TVVIGHDMRDSSPELAAAFAEGVTAQGLDVVRIGLASTDQLYF 79 (445)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHCCCEEEEeCCCCCHHHHh
Confidence 69999997 777899999999999999999999765444433
No 195
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=54.42 E-value=11 Score=34.51 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=29.6
Q ss_pred CcEEEEEeCcccHH--HHHHHHHHHHhCCCcEEEecCCC
Q 021654 12 PLKIIAGADSFGAE--LKDALVSHLRSLNIDVEDLGTSD 48 (309)
Q Consensus 12 ~mki~i~~D~~g~~--lk~~l~~~l~~~g~ev~d~G~~~ 48 (309)
.-||+||+=-.-.. =|+.+...|+..||+|+|+|.+-
T Consensus 104 ~g~vVigtveGDvHdIGk~iV~~ml~~aGfevidLG~dv 142 (227)
T COG5012 104 LGKVVIGTVEGDVHDIGKNIVATMLEAAGFEVIDLGRDV 142 (227)
T ss_pred CceEEEEeecccHHHHHHHHHHHHHHhCCcEEEecCCCC
Confidence 35799988655333 48899999999999999999864
No 196
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=52.66 E-value=36 Score=38.55 Aligned_cols=36 Identities=22% Similarity=0.115 Sum_probs=27.0
Q ss_pred CcEEEEEeCcccHH--HHHHHHHHHHhCCCcEEEecCC
Q 021654 12 PLKIIAGADSFGAE--LKDALVSHLRSLNIDVEDLGTS 47 (309)
Q Consensus 12 ~mki~i~~D~~g~~--lk~~l~~~l~~~g~ev~d~G~~ 47 (309)
+=||++++=..-.. =|+.+.-.|+..||+|+|+|.+
T Consensus 732 ~gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~d 769 (1178)
T TIGR02082 732 KGKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVM 769 (1178)
T ss_pred CCeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCC
Confidence 34899986332222 3688888899999999999985
No 197
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=52.29 E-value=40 Score=25.55 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=24.0
Q ss_pred EEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC
Q 021654 14 KIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS 47 (309)
Q Consensus 14 ki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~ 47 (309)
+|-|-+=-.---|-..+.+.|+++||.+.+.|..
T Consensus 5 ~V~VlNgt~~~GlA~~~a~~L~~~Gf~v~~~~n~ 38 (90)
T PF13399_consen 5 RVEVLNGTGVSGLAARVADALRNRGFTVVEVGNA 38 (90)
T ss_pred EEEEEECcCCcCHHHHHHHHHHHCCCceeecCCC
Confidence 4444333322336688999999999999999864
No 198
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=51.73 E-value=22 Score=31.42 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=28.9
Q ss_pred CceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceE
Q 021654 233 FGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEF 281 (309)
Q Consensus 233 ~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~ 281 (309)
....+|+++|.+.+ ..+++.+.|.+||.+++.. .+...-.++..+
T Consensus 135 ~~~l~~~~~G~~~i--~~~~~~~~L~~~d~l~~~~--~~~~~l~~~g~l 179 (184)
T PF05962_consen 135 STVLVYVLEGAWSI--TEGGNCISLSAGDLLLIDD--EEDLPLTGDGQL 179 (184)
T ss_dssp SEEEEEESSS-EEE--CCCEEEEEE-TT-EEEEES--EECEEEEEECCE
T ss_pred CEEEEEEeeCcEEE--ecCCCceEcCCCCEEEEeC--CCceEecCCeeE
Confidence 34458999998887 4446899999999999987 444433333333
No 199
>PRK14821 putative deoxyribonucleotide triphosphate pyrophosphatase; Provisional
Probab=50.85 E-value=31 Score=30.53 Aligned_cols=74 Identities=20% Similarity=0.300 Sum_probs=51.9
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecC-------CCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhh
Q 021654 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGT-------SDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIF 85 (309)
Q Consensus 13 mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~-------~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~ia 85 (309)
|||+++|-..+ .+ +++++.|...|++|+.+.. .+|.+.|..=|+.+.+ ....-++..-||+=+. +
T Consensus 1 m~i~~aT~N~~-K~-~E~~~il~~~~i~v~~~~~~~~E~~~~t~~enA~~KA~~~~~-----~~~~pvlaDDSGL~v~-a 72 (184)
T PRK14821 1 MKIYFATGNKG-KV-EEAKIILKPLGIEVEQIKIEYPEIQADTLEEVAAFGAKWVYN-----KLNRPVIVEDSGLFIE-A 72 (184)
T ss_pred CEEEEECCChh-HH-HHHHHHHhhcCcEEEECCCCCCCCCCCCHHHHHHHHHHHHHH-----HHCCCEEEEcCEEeeh-h
Confidence 78999988876 33 5677788777888877653 2466777766776664 2234688888886554 5
Q ss_pred hcCCCceEE
Q 021654 86 ANKNPGVFA 94 (309)
Q Consensus 86 aNK~~gira 94 (309)
.|-+|||+.
T Consensus 73 L~g~PGvys 81 (184)
T PRK14821 73 LNGFPGPYS 81 (184)
T ss_pred hCCCCcHHH
Confidence 689999854
No 200
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=50.65 E-value=10 Score=27.47 Aligned_cols=14 Identities=43% Similarity=0.923 Sum_probs=11.5
Q ss_pred EEEEecCchhhhhh
Q 021654 72 GLVACGTGVGVAIF 85 (309)
Q Consensus 72 gi~~CgtG~G~~ia 85 (309)
.+++|++|+|.+..
T Consensus 2 il~vc~~G~~~s~~ 15 (84)
T cd00133 2 ILVVCGSGIGSSSM 15 (84)
T ss_pred EEEECCCcHhHHHH
Confidence 57999999988753
No 201
>TIGR01132 pgm phosphoglucomutase, alpha-D-glucose phosphate-specific. This enzyme interconverts alpha-D-glucose-1-P and alpha-D-glucose-6-P.
Probab=50.24 E-value=57 Score=33.59 Aligned_cols=43 Identities=12% Similarity=0.162 Sum_probs=34.8
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEe---cCCCCcchhHHH
Q 021654 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDL---GTSDYYSIGAEV 56 (309)
Q Consensus 14 ki~i~~D~--~g~~lk~~l~~~l~~~g~ev~d~---G~~~y~~~a~~v 56 (309)
+|+||.|. ++-.+++.+..-|.+.|++|+|+ |.-.-|-+...+
T Consensus 79 ~VvVG~D~R~sS~~~~~a~a~gL~s~Gi~V~~~~~~G~~pTP~~~~av 126 (543)
T TIGR01132 79 PLYIGKDTHALSEPAFISVLEVLAANGVEVIVQENNGFTPTPAVSHAI 126 (543)
T ss_pred cEEEEeCCCcCCHHHHHHHHHHHHHCCCEEEEeCCCCcCCchHHHHHH
Confidence 49999997 68889999999999999999996 555555544444
No 202
>cd03086 PGM3 PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway. UDP-GlcNAc is an essential metabolite that serves as the biosynthetic precursor of many glycoproteins and mucopolysaccharides. AGM1 is a member of the alpha-D-phosphohexomutase superfamily, which catalyzes the intramolecular phosphoryl transfer of sugar substrates. The alpha-D-phosphohexomutases have four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=49.54 E-value=38 Score=34.82 Aligned_cols=37 Identities=32% Similarity=0.500 Sum_probs=32.4
Q ss_pred CCcEEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCC
Q 021654 11 HPLKIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTS 47 (309)
Q Consensus 11 ~~mki~i~~D~--~g~~lk~~l~~~l~~~g~ev~d~G~~ 47 (309)
+.-+|+||.|- ++-.||+.+.+-|.+.|.+|.|+|.-
T Consensus 101 ~~~~V~vg~D~R~ss~~l~~a~~~gl~~~G~~V~d~g~~ 139 (513)
T cd03086 101 VPANVFVGRDTRPSGPALLQALLDGLKALGGNVIDYGLV 139 (513)
T ss_pred CCCEEEEEeCCChhHHHHHHHHHHHHHHCCCeEEEccCc
Confidence 34589999997 56669999999999999999999964
No 203
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=49.41 E-value=79 Score=28.24 Aligned_cols=67 Identities=19% Similarity=0.160 Sum_probs=42.3
Q ss_pred EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEee-CCeE---EEecCCcEEEECCCCeEE--EEEcCCceEE
Q 021654 216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLT-KGER---FDLTVGDYLFTPAGDVHR--VKYYEETEFF 282 (309)
Q Consensus 216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~-~~~~---~~L~pGD~v~IP~g~~H~--~~n~gd~~~~ 282 (309)
....+++|...-..-.+...+++|++|.+.+.... +|+. ..+.|||.+=...+.++. ....+++.++
T Consensus 39 ~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~~~~~~~~~A~~ds~v~ 111 (230)
T PRK09391 39 SEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESGSTHRFTAEAIVDTTVR 111 (230)
T ss_pred eeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCCCcCCeEEEEcCceEEE
Confidence 34567777776555555667789999999986432 3332 445799977666665543 4444555543
No 204
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=49.36 E-value=26 Score=30.34 Aligned_cols=71 Identities=21% Similarity=0.229 Sum_probs=47.0
Q ss_pred EEEEeCcccHHHHHHHHHHHHhCCCcEEEec---CCCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCCCc
Q 021654 15 IIAGADSFGAELKDALVSHLRSLNIDVEDLG---TSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKNPG 91 (309)
Q Consensus 15 i~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G---~~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~~g 91 (309)
|+.||+.. .+.-++..+.|++.|.+ .|++ .+.-|+--.+..+...+ . ..-++|++.|. +|-.||
T Consensus 3 IimGS~SD-~~~~~~a~~~L~~~gi~-~dv~V~SaHRtp~~~~~~~~~a~~----~--g~~viIa~AG~-----aa~Lpg 69 (156)
T TIGR01162 3 IIMGSDSD-LPTMKKAADILEEFGIP-YELRVVSAHRTPELMLEYAKEAEE----R--GIKVIIAGAGG-----AAHLPG 69 (156)
T ss_pred EEECcHhh-HHHHHHHHHHHHHcCCC-eEEEEECcccCHHHHHHHHHHHHH----C--CCeEEEEeCCc-----cchhHH
Confidence 67777764 56778888899999966 4444 44566665666665443 1 23678888874 667777
Q ss_pred eEEEEeC
Q 021654 92 VFATTCL 98 (309)
Q Consensus 92 iraa~~~ 98 (309)
+.|+++.
T Consensus 70 vva~~t~ 76 (156)
T TIGR01162 70 MVAALTP 76 (156)
T ss_pred HHHhccC
Confidence 7766654
No 205
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=49.25 E-value=67 Score=28.40 Aligned_cols=111 Identities=15% Similarity=0.065 Sum_probs=61.4
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCCCCc--chhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCCC
Q 021654 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYY--SIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKNP 90 (309)
Q Consensus 13 mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~~y~--~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~~ 90 (309)
|||.+..-.. --+.+.+.|++.|++|+.+=..... +.... -..... ....-.++..|..|+....+...
T Consensus 2 ~~ilitr~~~---~~~~l~~~l~~~G~~v~~~p~~~~~~~~~~~~-~~~~~~-----~~~~d~iiftS~~av~~~~~~~~ 72 (249)
T PRK05928 2 MKILVTRPSP---KAEELVELLRELGFVALHFPLIEIEPGRQLPQ-LAAQLA-----ALGADWVIFTSKNAVEFLLSALK 72 (249)
T ss_pred CEEEEeCCHH---HHHHHHHHHHHcCCCEEEeccEEEecCCCcCh-HHHHhh-----CCCCCEEEEECHHHHHHHHHHHH
Confidence 7777775432 2357788889999999988664321 11111 111121 22345577788888888776432
Q ss_pred -------ceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHH
Q 021654 91 -------GVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDT 133 (309)
Q Consensus 91 -------giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~ 133 (309)
.-....|--+.+|+..+++.-- +..++......+++..+.+.
T Consensus 73 ~~~~~~~~~~~~~avG~~Ta~~l~~~G~~-~~~~~~~~~~~~l~~~l~~~ 121 (249)
T PRK05928 73 KKKLKWPKNKKYAAIGEKTALALKKLGGK-VVFVPEDGESSELLLELPEL 121 (249)
T ss_pred hcCcCCCCCCEEEEECHHHHHHHHHcCCC-ccccCCCCcChHHHHhChhh
Confidence 1123455566666666655332 22345555555555555443
No 206
>PRK14824 putative deoxyribonucleotide triphosphate pyrophosphatase; Provisional
Probab=48.86 E-value=36 Score=30.60 Aligned_cols=75 Identities=19% Similarity=0.275 Sum_probs=49.6
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecC--------CCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhh
Q 021654 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGT--------SDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAI 84 (309)
Q Consensus 13 mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~--------~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~i 84 (309)
|||+++|-..+ .+ +++++.|...|++|+.+.. .+|.+.|..=|+.+.+ ....-++.+-||+=+.
T Consensus 1 m~i~~aT~N~~-K~-~E~~~iL~~~~i~v~~~~~~~e~~E~~~tf~eNA~~KA~~~~~-----~~~~pviaDDSGL~vd- 72 (201)
T PRK14824 1 MKILLATTNEG-KV-REIKRLLSDLGIEVLSPDKKIEVEEDGETFLENAYLKARAYAE-----FYKIPVLADDSGLEVP- 72 (201)
T ss_pred CEEEEECCChH-HH-HHHHHHHhhcCCEEEEcCcCCCCCCCCCCHHHHHHHHHHHHHH-----HHCCCEEEeccEEEec-
Confidence 68888887765 23 5677778777888876641 1466677666666654 1223478888875332
Q ss_pred hhcCCCceEEE
Q 021654 85 FANKNPGVFAT 95 (309)
Q Consensus 85 aaNK~~giraa 95 (309)
|.|.+|||+.+
T Consensus 73 AL~G~PGvysa 83 (201)
T PRK14824 73 ALEGYPGVYSS 83 (201)
T ss_pred ccCCCCceeeH
Confidence 45999999654
No 207
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=48.86 E-value=55 Score=32.55 Aligned_cols=44 Identities=27% Similarity=0.307 Sum_probs=35.8
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHH
Q 021654 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVG 57 (309)
Q Consensus 14 ki~i~~D~--~g~~lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~va 57 (309)
+|+||.|. .+-.+++.+.+-|.+.|.+|+|+|.-.-|-++..+.
T Consensus 36 ~VvVG~D~R~ss~~~~~a~~~gL~s~G~~V~~~g~~pTP~~~~av~ 81 (441)
T cd05805 36 TVTVSRDASRASRMLKRALISGLLSTGVNVRDLGALPLPVARYAIR 81 (441)
T ss_pred EEEEEcCCChhHHHHHHHHHHHHHhCCCeEEecCCcCchHHHHHHH
Confidence 69999995 566699999999999999999999765665555443
No 208
>COG3150 Predicted esterase [General function prediction only]
Probab=48.81 E-value=23 Score=31.38 Aligned_cols=67 Identities=12% Similarity=0.017 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhCCCcEEEecC--CCCcchhHH-HHHHhhcCCCCCCCceEEEEecCchhhhhh--hcCCCceEEEEe
Q 021654 26 LKDALVSHLRSLNIDVEDLGT--SDYYSIGAE-VGRRVSSSDSSDTTTRGLVACGTGVGVAIF--ANKNPGVFATTC 97 (309)
Q Consensus 26 lk~~l~~~l~~~g~ev~d~G~--~~y~~~a~~-va~~v~~~~~~~~~~~gi~~CgtG~G~~ia--aNK~~giraa~~ 97 (309)
-|..+++++.+.+-.+.=.-+ ..||..|.+ +=+.|.. ..++-++|||+|.|=.-| .+-.-|||+++.
T Consensus 16 ka~l~~q~~~~~~~~i~y~~p~l~h~p~~a~~ele~~i~~-----~~~~~p~ivGssLGGY~At~l~~~~Girav~~ 87 (191)
T COG3150 16 KAVLLLQFIDEDVRDIEYSTPHLPHDPQQALKELEKAVQE-----LGDESPLIVGSSLGGYYATWLGFLCGIRAVVF 87 (191)
T ss_pred HHHHHHHHHhccccceeeecCCCCCCHHHHHHHHHHHHHH-----cCCCCceEEeecchHHHHHHHHHHhCChhhhc
Confidence 455666666664322221111 247765544 4444544 334459999999995433 233335555443
No 209
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=48.51 E-value=28 Score=34.35 Aligned_cols=98 Identities=21% Similarity=0.283 Sum_probs=56.3
Q ss_pred HHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhh----hhhcC------CCceEEEE
Q 021654 29 ALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVA----IFANK------NPGVFATT 96 (309)
Q Consensus 29 ~l~~~l~~~g~ev~d~G~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~----iaaNK------~~giraa~ 96 (309)
.|...|++.|+++.+++. +++..+...+.+.+. ++|.-|+..|+|.|-. =+..+ |+||.
T Consensus 199 ~l~~~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~------~~DliittGG~s~g~~D~~~~al~~~g~~~~f~gv~--- 269 (394)
T cd00887 199 MLAALLRELGAEVVDLGIVPDDPEALREALEEALE------EADVVITSGGVSVGDYDFVKEVLEELGGEVLFHGVA--- 269 (394)
T ss_pred HHHHHHHHCCCEEEEeceeCCCHHHHHHHHHHHhh------CCCEEEEeCCCCCCcchhHHHHHHhCCCeEEEEEEE---
Confidence 566778889999999996 456666666666643 3777777777776621 11111 22222
Q ss_pred eCCHHHHHHhHhhcCceEeEeccccCCHHHHHH-HHHHHHc
Q 021654 97 CLTPADALNTRSINNCNVLAVSGMSTSKESAVE-ILDTWLK 136 (309)
Q Consensus 97 ~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~-i~~~~l~ 136 (309)
-.|-.-.++-..++.=|++|++.-.+...... ++.-+|.
T Consensus 270 -~kPG~p~~~g~~~~~~v~~LPG~P~sa~~~~~~~v~p~l~ 309 (394)
T cd00887 270 -MKPGKPLAFGRLGGKPVFGLPGNPVSALVTFELFVRPALR 309 (394)
T ss_pred -EecCCCEEEEEECCEEEEECCCCHHHHHHHHHHHHHHHHH
Confidence 11211112223357778999988666544433 4444443
No 210
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=47.03 E-value=1.8e+02 Score=26.91 Aligned_cols=87 Identities=10% Similarity=0.108 Sum_probs=51.2
Q ss_pred EEE-EEeCc--ccHHHHHHHHHHHHhCCCcEEEecCC--CCcchhHHHHHHhhcCCCCCCCceEEEEecCc-hhhhhhh-
Q 021654 14 KII-AGADS--FGAELKDALVSHLRSLNIDVEDLGTS--DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTG-VGVAIFA- 86 (309)
Q Consensus 14 ki~-i~~D~--~g~~lk~~l~~~l~~~g~ev~d~G~~--~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG-~G~~iaa- 86 (309)
|++ |.+|. .|..+.+.+++.+++.|.++...-.. +..++...+.+...+ + . .+|++++.+ .++.++-
T Consensus 134 ~~~~i~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~i~~~----~-p-daV~~~~~~~~a~~~~~~ 207 (341)
T cd06341 134 RAVALVTALSAAVSAAAALLARSLAAAGVSVAGIVVITATAPDPTPQAQQAAAA----G-A-DAIITVLDAAVCASVLKA 207 (341)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHHHcCCccccccccCCCCCCHHHHHHHHHhc----C-C-CEEEEecChHHHHHHHHH
Confidence 555 44443 57778999999999999988764332 245666666555443 3 3 377777766 4444432
Q ss_pred ---c--CCCceEEEEeCCHHHHHHh
Q 021654 87 ---N--KNPGVFATTCLTPADALNT 106 (309)
Q Consensus 87 ---N--K~~giraa~~~~~~~A~~~ 106 (309)
. +.|-+....+.++...+..
T Consensus 208 ~~~~G~~~~~~~~~~~~~~~~~~~~ 232 (341)
T cd06341 208 VRAAGLTPKVVLSGTCYDPALLAAP 232 (341)
T ss_pred HHHcCCCCCEEEecCCCCHHHHHhc
Confidence 1 3344444455665544433
No 211
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=47.00 E-value=34 Score=27.01 Aligned_cols=29 Identities=28% Similarity=0.296 Sum_probs=22.9
Q ss_pred CcEEEEEeCccc---HHHHHHHHHHHHhCCCc
Q 021654 12 PLKIIAGADSFG---AELKDALVSHLRSLNID 40 (309)
Q Consensus 12 ~mki~i~~D~~g---~~lk~~l~~~l~~~g~e 40 (309)
++||..+|-..- +-+|..|+++|+++|++
T Consensus 1 ~~KIL~aCG~GvgSS~~ik~kve~~l~~~gi~ 32 (93)
T COG3414 1 MIKILAACGNGVGSSTMIKMKVEEVLKELGID 32 (93)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHHcCCC
Confidence 368888887632 33999999999999985
No 212
>cd03087 PGM_like1 This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=46.69 E-value=86 Score=31.10 Aligned_cols=63 Identities=17% Similarity=0.123 Sum_probs=40.1
Q ss_pred CCCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC---CCc--------chhHHHHHHhhcCCCCCCCceEEEEecC
Q 021654 10 PHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS---DYY--------SIGAEVGRRVSSSDSSDTTTRGLVACGT 78 (309)
Q Consensus 10 ~~~mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~---~y~--------~~a~~va~~v~~~~~~~~~~~gi~~Cgt 78 (309)
.+++||++-+-|..- ...+.+.|++.|.+|+-+... ++| ..-..+.+.|.+ ..+|.||.+.|-
T Consensus 162 ~~~lkIvid~~~G~~--~~~~~~~l~~lg~~v~~~~~~~d~~f~~~~p~p~~~~l~~l~~~v~~----~~adlgia~D~D 235 (439)
T cd03087 162 GKGLKVVVDCGNGAG--SLTTPYLLRELGCKVITLNANPDGFFPGRPPEPTPENLSELMELVRA----TGADLGIAHDGD 235 (439)
T ss_pred CCCCEEEEECCCCch--HHHHHHHHHHcCCEEEEECCcCCCCCCCCCCCCCHHHHHHHHHHHHh----cCCCEEEEEcCC
Confidence 357899999988653 477788888899999876542 122 233455666665 445555544433
No 213
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=46.31 E-value=29 Score=30.20 Aligned_cols=81 Identities=17% Similarity=0.142 Sum_probs=51.0
Q ss_pred HHHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCCCceEEEEeCCHHHHHH
Q 021654 28 DALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALN 105 (309)
Q Consensus 28 ~~l~~~l~~~g~ev~d~G~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~~giraa~~~~~~~A~~ 105 (309)
..|.+.|++.|++|..... ++...+...+.+.+. .+|.-|+-.|+|.| .|-.+-+-
T Consensus 22 ~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~------~~dlVIttGG~G~t----------------~~D~t~ea 79 (170)
T cd00885 22 AFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASE------RADLVITTGGLGPT----------------HDDLTREA 79 (170)
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHh------CCCEEEECCCCCCC----------------CCChHHHH
Confidence 3667778899999988774 345556666666543 35555544444432 23333333
Q ss_pred hHhhcCceEeEeccccCCHHHHHHHHHHHHcC
Q 021654 106 TRSINNCNVLAVSGMSTSKESAVEILDTWLKT 137 (309)
Q Consensus 106 ~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~ 137 (309)
.++ ++|..+.+.+.+.+.+++|+..
T Consensus 80 ~~~-------~~~~~l~~~~e~~~~i~~~~~~ 104 (170)
T cd00885 80 VAK-------AFGRPLVLDEEALERIEARFAR 104 (170)
T ss_pred HHH-------HhCCCcccCHHHHHHHHHHHHh
Confidence 333 3567788888888888888763
No 214
>PTZ00150 phosphoglucomutase-2-like protein; Provisional
Probab=46.06 E-value=66 Score=33.46 Aligned_cols=43 Identities=19% Similarity=0.133 Sum_probs=35.2
Q ss_pred EEEEEeC--cccHHHHHHHHHHHHhCCCcEEEec-CCCCcchhHHH
Q 021654 14 KIIAGAD--SFGAELKDALVSHLRSLNIDVEDLG-TSDYYSIGAEV 56 (309)
Q Consensus 14 ki~i~~D--~~g~~lk~~l~~~l~~~g~ev~d~G-~~~y~~~a~~v 56 (309)
+|+||.| +.+-.+++.+..-|.+.|++|.|+| .-.-|-++..+
T Consensus 91 ~VvVg~D~R~~S~~fa~~~a~~L~a~Gi~V~~~g~~~pTP~lsfav 136 (584)
T PTZ00150 91 GVVIGYDGRYHSRRFAEITASVFLSKGFKVYLFGQTVPTPFVPYAV 136 (584)
T ss_pred cEEEEeCCCCCcHHHHHHHHHHHHHCCCEEEEeCCCCCcHHHHHHH
Confidence 6999999 5777899999999999999999998 44455544444
No 215
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=45.98 E-value=36 Score=32.63 Aligned_cols=92 Identities=11% Similarity=0.119 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhC--CCcEEEecCCCCc--chhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCCCceEEEEeCCHH
Q 021654 26 LKDALVSHLRSL--NIDVEDLGTSDYY--SIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKNPGVFATTCLTPA 101 (309)
Q Consensus 26 lk~~l~~~l~~~--g~ev~d~G~~~y~--~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~~giraa~~~~~~ 101 (309)
.++.|++.+++. .|-.+=.|+..+- .+|..+++.+... . ..+.. -|+.|.+-.
T Consensus 14 ~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~---~--~~~~~------------------~cg~C~~c~ 70 (329)
T PRK08058 14 VVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCL---E--RNGVE------------------PCGTCTNCK 70 (329)
T ss_pred HHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCC---C--CCCCC------------------CCCcCHHHH
Confidence 444555555432 3555666776653 5677777776641 1 01111 233443322
Q ss_pred HHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCC
Q 021654 102 DALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKA 141 (309)
Q Consensus 102 ~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~ 141 (309)
. .....|+|-|.+..-+..++.+..+++++.+-.++|.+
T Consensus 71 ~-~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~ 109 (329)
T PRK08058 71 R-IDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVES 109 (329)
T ss_pred H-HhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCccc
Confidence 1 23456889999988888899999999999988888876
No 216
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=45.88 E-value=1.3e+02 Score=23.16 Aligned_cols=63 Identities=22% Similarity=0.223 Sum_probs=41.3
Q ss_pred CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC---CC-------c--chhHHHHHHhhcCCCCCCCceEEEEecC
Q 021654 11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS---DY-------Y--SIGAEVGRRVSSSDSSDTTTRGLVACGT 78 (309)
Q Consensus 11 ~~mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~---~y-------~--~~a~~va~~v~~~~~~~~~~~gi~~Cgt 78 (309)
+.+||++-+.|.--. ..+.+.|+..|.+++-+... +| | ..-..+.+.+.+ ..+++|+.+.|-
T Consensus 20 ~~~kivvD~~~G~~~--~~~~~ll~~lg~~~~~~n~~~d~~f~~~~~p~p~~~~l~~~~~~v~~----~~ad~g~~~DgD 93 (104)
T PF02879_consen 20 SGLKIVVDCMNGAGS--DILPRLLERLGCDVIELNCDPDPDFPNQHAPNPEEESLQRLIKIVRE----SGADLGIAFDGD 93 (104)
T ss_dssp TTCEEEEE-TTSTTH--HHHHHHHHHTTCEEEEESSS-STTGTTTSTSSTSTTTTHHHHHHHHH----STTSEEEEE-TT
T ss_pred CCCEEEEECCCCHHH--HHHHHHHHHcCCcEEEEecccccccccccccccccchhHHHHHHhhc----cCceEEEEECCc
Confidence 457999999996533 46677788899988765442 12 1 245677777776 566777777776
Q ss_pred c
Q 021654 79 G 79 (309)
Q Consensus 79 G 79 (309)
|
T Consensus 94 a 94 (104)
T PF02879_consen 94 A 94 (104)
T ss_dssp S
T ss_pred C
Confidence 5
No 217
>PRK14822 nucleoside-triphosphatase; Provisional
Probab=45.87 E-value=38 Score=30.43 Aligned_cols=76 Identities=16% Similarity=0.325 Sum_probs=50.0
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEec---C--------CCCcchhHHHHHHhhcCCCCCCCceEEEEecCchh
Q 021654 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLG---T--------SDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVG 81 (309)
Q Consensus 13 mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G---~--------~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G 81 (309)
|||+++|-..+ .+ +++++.|...+++|+-+. . .+|.+.|..=|+.+.+ ....-++.+-||+=
T Consensus 2 ~~i~~aT~N~~-K~-~E~~~iL~~~~~~i~~~~~~~~~~e~~E~g~t~~enA~~KA~~~~~-----~~~~pviaDDSGL~ 74 (200)
T PRK14822 2 KEIVIATKNKG-KV-REFKEIFEKFDIEVKSLADFPPIPEVEETGTTFEENAILKAEAAAK-----ALNKPVIADDSGLE 74 (200)
T ss_pred CeEEEECCCHH-HH-HHHHHHHhhcCcEEEEchhcCCCCCCCCCCCCHHHHHHHHHHHHHH-----HHCCCEEEeccEEE
Confidence 47999988766 33 567777877788876333 1 1455666666666654 22345788888765
Q ss_pred hhhhhcCCCceEEEE
Q 021654 82 VAIFANKNPGVFATT 96 (309)
Q Consensus 82 ~~iaaNK~~giraa~ 96 (309)
+. |.|.+|||+.+.
T Consensus 75 v~-AL~G~PGvysar 88 (200)
T PRK14822 75 VD-ALNGAPGVYSAR 88 (200)
T ss_pred Ec-ccCCCCceechh
Confidence 44 569999997553
No 218
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=45.82 E-value=42 Score=28.70 Aligned_cols=98 Identities=13% Similarity=0.063 Sum_probs=53.6
Q ss_pred CCcEEEEEe-CcccHHHH-HHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcC
Q 021654 11 HPLKIIAGA-DSFGAELK-DALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANK 88 (309)
Q Consensus 11 ~~mki~i~~-D~~g~~lk-~~l~~~l~~~g~ev~d~G~~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK 88 (309)
++-||.++. =..|-+.- +.+...|++.|+||++.|...-|+=+.. .++.+ .--.|.+|++=-|=-
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~--aA~~~------dv~vIgvSsl~g~h~----- 77 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVR--AAVEE------DVDVIGVSSLDGGHL----- 77 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHH--HHHhc------CCCEEEEEeccchHH-----
Confidence 344565542 12233333 3566678899999999999877743333 33443 345899997642211
Q ss_pred CCceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHH
Q 021654 89 NPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVE 129 (309)
Q Consensus 89 ~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~ 129 (309)
-+|... -...|+---..|+.+.+.++.++...+
T Consensus 78 ------~l~~~l--ve~lre~G~~~i~v~~GGvip~~d~~~ 110 (143)
T COG2185 78 ------TLVPGL--VEALREAGVEDILVVVGGVIPPGDYQE 110 (143)
T ss_pred ------HHHHHH--HHHHHHhCCcceEEeecCccCchhHHH
Confidence 112211 233344333445557777787777433
No 219
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=45.55 E-value=58 Score=28.32 Aligned_cols=74 Identities=18% Similarity=0.172 Sum_probs=50.5
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCC--CcEEEecCCCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCCC
Q 021654 13 LKIIAGADSFGAELKDALVSHLRSLN--IDVEDLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKNP 90 (309)
Q Consensus 13 mki~i~~D~~g~~lk~~l~~~l~~~g--~ev~d~G~~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~~ 90 (309)
.-|++|||.. ++.-+.-.+.|++.| ||+.=...+.-|+.-...++.-.+ ...-++|-|.|- |+-.|
T Consensus 5 V~IIMGS~SD-~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~------~g~~viIAgAGg-----AAHLP 72 (162)
T COG0041 5 VGIIMGSKSD-WDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEE------RGVKVIIAGAGG-----AAHLP 72 (162)
T ss_pred EEEEecCcch-HHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHH------CCCeEEEecCcc-----hhhcc
Confidence 3488899985 565566678899988 566666667778776666655443 234458888873 67778
Q ss_pred ceEEEEeC
Q 021654 91 GVFATTCL 98 (309)
Q Consensus 91 giraa~~~ 98 (309)
|+.|+.-.
T Consensus 73 GmvAa~T~ 80 (162)
T COG0041 73 GMVAAKTP 80 (162)
T ss_pred hhhhhcCC
Confidence 87777643
No 220
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=45.52 E-value=30 Score=36.23 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=27.7
Q ss_pred CCCCCcEEEEEeCcccH---HHHHHHHHHHHhCCCcE
Q 021654 8 AAPHPLKIIAGADSFGA---ELKDALVSHLRSLNIDV 41 (309)
Q Consensus 8 ~~~~~mki~i~~D~~g~---~lk~~l~~~l~~~g~ev 41 (309)
...++|||.+.|+..=- =+|+.++++|+++|+++
T Consensus 502 ~~~k~mKILvaCGsGiGTStmva~kIkk~Lke~GI~v 538 (602)
T PRK09548 502 DGGKPVRILAVCGQGQGSSMMMKMKIKKYLDKRGIPI 538 (602)
T ss_pred ccCcccEEEEECCCCchHHHHHHHHHHHHHHHcCCCe
Confidence 44577999999998422 29999999999999974
No 221
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=44.94 E-value=29 Score=24.93 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=24.6
Q ss_pred EEEEEeCcccHHHHHHHHHHHHhCCCcEEE
Q 021654 14 KIIAGADSFGAELKDALVSHLRSLNIDVED 43 (309)
Q Consensus 14 ki~i~~D~~g~~lk~~l~~~l~~~g~ev~d 43 (309)
.|.++-+-.+-+-.+.|++.|++.||++.|
T Consensus 39 ~v~v~ie~~~~~~~~~i~~~L~~~G~~~~d 68 (68)
T cd04885 39 RVLVGIQVPDREDLAELKERLEALGYPYVD 68 (68)
T ss_pred EEEEEEEeCCHHHHHHHHHHHHHcCCCccC
Confidence 466666666778889999999999999876
No 222
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=44.94 E-value=82 Score=31.45 Aligned_cols=72 Identities=19% Similarity=0.206 Sum_probs=46.6
Q ss_pred CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC---CCc--------chhHHHHHHhhcCCCCCCCceEEEEecCc
Q 021654 11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS---DYY--------SIGAEVGRRVSSSDSSDTTTRGLVACGTG 79 (309)
Q Consensus 11 ~~mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~---~y~--------~~a~~va~~v~~~~~~~~~~~gi~~CgtG 79 (309)
+.+||++-+-|... ...+.+.|++.|.+|+-+... .+| .....+.+.|.+ ..+|.||.+.|.|
T Consensus 172 ~~~kivvd~~~G~~--~~~~~~il~~lg~~v~~~~~~~dg~F~~~~p~p~~~~l~~l~~~v~~----~~ad~Gia~D~Dg 245 (461)
T cd05800 172 AGLKVVVDPMYGAG--AGYLEELLRGAGVDVEEIRAERDPLFGGIPPEPIEKNLGELAEAVKE----GGADLGLATDGDA 245 (461)
T ss_pred CCceEEEeCCCCCc--HHHHHHHHHHcCCCEEEeeCCcCCCCCCCCCCCCHHHHHHHHHHHHh----cCCCEEEEECCCC
Confidence 57899998888542 346777888899999866432 121 344567777776 5567777776666
Q ss_pred hhhhhhhcC
Q 021654 80 VGVAIFANK 88 (309)
Q Consensus 80 ~G~~iaaNK 88 (309)
==+.++-++
T Consensus 246 DR~~vvd~~ 254 (461)
T cd05800 246 DRIGAVDEK 254 (461)
T ss_pred CeEEEEeCC
Confidence 554444443
No 223
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=44.86 E-value=29 Score=33.37 Aligned_cols=63 Identities=21% Similarity=0.263 Sum_probs=42.8
Q ss_pred EEEEeCcccHH-----HHHHHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhh
Q 021654 15 IIAGADSFGAE-----LKDALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGV 82 (309)
Q Consensus 15 i~i~~D~~g~~-----lk~~l~~~l~~~g~ev~d~G~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~ 82 (309)
|++.+|..... --..|.+.|++.|+++.+.+. ++...+...+.+.+.+ .+|.-|+-.|||.|-
T Consensus 160 Iltvsde~~~G~i~Dsn~~~L~~~L~~~G~~v~~~~iVpDD~~~I~~al~~a~~~-----~~DlIITTGGtg~g~ 229 (312)
T PRK03604 160 VLVLSDSIAAGTKEDRSGKLIVEGLEEAGFEVSHYTIIPDEPAEIAAAVAAWIAE-----GYALIITTGGTGLGP 229 (312)
T ss_pred EEEECCcCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHhhhC-----CCCEEEECCCCCCCC
Confidence 77788855222 124688889999999999985 4565666666665432 467777777777764
No 224
>PLN02371 phosphoglucosamine mutase family protein
Probab=43.56 E-value=75 Score=33.11 Aligned_cols=43 Identities=28% Similarity=0.409 Sum_probs=35.7
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHH
Q 021654 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEV 56 (309)
Q Consensus 14 ki~i~~D~--~g~~lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~v 56 (309)
+|+||.|. .+-.|++.+..-|.+.|++|+|+|.-.-|-+...+
T Consensus 117 ~VvVG~D~R~sS~~l~~a~a~gL~s~Gi~V~~~g~~pTP~~~~av 161 (583)
T PLN02371 117 RVSVGRDPRISGPRLADAVFAGLASAGLDVVDMGLATTPAMFMST 161 (583)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHCCCEEEEecccCchHHHHHH
Confidence 69999995 66779999999999999999999976556555544
No 225
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=43.48 E-value=35 Score=34.07 Aligned_cols=48 Identities=23% Similarity=0.289 Sum_probs=38.9
Q ss_pred HHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhh
Q 021654 29 ALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGV 82 (309)
Q Consensus 29 ~l~~~l~~~g~ev~d~G~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~ 82 (309)
.|...|++.|.|++++|. +|+..+...+.+++.+ +|.-|+.-|+.+|-
T Consensus 207 ~l~a~l~~~G~e~~~~giv~Dd~~~l~~~i~~a~~~------~DviItsGG~SvG~ 256 (404)
T COG0303 207 MLAALLERAGGEVVDLGIVPDDPEALREAIEKALSE------ADVIITSGGVSVGD 256 (404)
T ss_pred HHHHHHHHcCCceeeccccCCCHHHHHHHHHHhhhc------CCEEEEeCCccCcc
Confidence 577788999999999996 5677787777777653 78888888888774
No 226
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=43.25 E-value=83 Score=28.95 Aligned_cols=79 Identities=11% Similarity=0.088 Sum_probs=49.1
Q ss_pred hhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCCCce-EEEEeCCHHHHHHhHhhcCceEeEeccc-------cCC
Q 021654 52 IGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKNPGV-FATTCLTPADALNTRSINNCNVLAVSGM-------STS 123 (309)
Q Consensus 52 ~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~~gi-raa~~~~~~~A~~~r~hN~aNvl~lg~~-------~~~ 123 (309)
+|.+++..|.. | +.-++=|||=. ...|+-+|.. .-.++++...|.....++|.||+.+||. ++|
T Consensus 83 IA~~Aa~~I~~----g--~~Ifld~GsT~--~~la~~L~~~~ltVvTnsl~ia~~l~~~~~~~v~l~GG~~~~~~~~~~G 154 (251)
T PRK13509 83 IAKAASQLCNP----G--ESVVINCGSTA--FLLGRELCGKPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKSQSITLS 154 (251)
T ss_pred HHHHHHHhCCC----C--CEEEECCcHHH--HHHHHHhCCCCeEEEeCCHHHHHHHHhCCCCEEEEECCeEcCCcceeEC
Confidence 67777777765 2 33333344433 3344444322 5566777888887788899999999998 467
Q ss_pred HHHHHHHHHHH-HcCCCC
Q 021654 124 KESAVEILDTW-LKTPFK 140 (309)
Q Consensus 124 ~~~a~~i~~~~-l~~~f~ 140 (309)
+. + +.++.| ++.-|-
T Consensus 155 ~~-~-~~l~~~~~d~aFi 170 (251)
T PRK13509 155 PQ-G-SENSLYAGHWMFT 170 (251)
T ss_pred HH-H-HHHHhCcCCEEEE
Confidence 75 5 566665 344443
No 227
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=42.77 E-value=28 Score=30.11 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=23.5
Q ss_pred CeEEEecCCcEEEECCCCeEEEEEcCC
Q 021654 252 GERFDLTVGDYLFTPAGDVHRVKYYEE 278 (309)
Q Consensus 252 ~~~~~L~pGD~v~IP~g~~H~~~n~gd 278 (309)
.....|.||+++.+=||.+|+..+..+
T Consensus 111 e~~v~L~~G~faiFfP~e~H~P~c~~~ 137 (154)
T COG2731 111 ESTVELNPGMFAIFFPGEPHRPGCNVG 137 (154)
T ss_pred ceEEEeCCCCEEEECCCCccccccccC
Confidence 467899999999999999999877665
No 228
>KOG4281 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.69 E-value=25 Score=32.08 Aligned_cols=40 Identities=28% Similarity=0.156 Sum_probs=30.8
Q ss_pred EeeeCCCe-EEEEEcCCCcCCCeecCCceE-EEEEecEEEEE
Q 021654 208 IIRESPTS-AIVRFKAGSVEPAHHHTFGHD-LVVLQGKKSVW 247 (309)
Q Consensus 208 il~~~~~~-~~~~l~pG~~~p~H~H~~~e~-vyVlsG~l~v~ 247 (309)
+...+..+ .+|.+++++.+|.|-|+.... .-+|=|++.+.
T Consensus 69 i~EcD~FSigiFclp~ss~IPLHdHPgM~v~sKllyGtmhVk 110 (236)
T KOG4281|consen 69 IHECDRFSIGIFCLPPSSVIPLHDHPGMTVLSKLLYGTMHVK 110 (236)
T ss_pred EEecCceeEEEEEcCCCCeeecCCCcchHHHHHhhhceeEee
Confidence 33333333 789999999999999998776 66788999883
No 229
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=42.55 E-value=31 Score=36.12 Aligned_cols=104 Identities=15% Similarity=0.193 Sum_probs=60.0
Q ss_pred HHHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhh----hhhcCCCceEE-EEeCCH
Q 021654 28 DALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVA----IFANKNPGVFA-TTCLTP 100 (309)
Q Consensus 28 ~~l~~~l~~~g~ev~d~G~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~----iaaNK~~gira-a~~~~~ 100 (309)
..|.+.|++.|+++++++. +++..+...+.+.+. .+|.-|+..|||.|-. -+..++--++. .+--.|
T Consensus 216 ~~l~~~l~~~g~~~~~~~~v~Dd~~~i~~~l~~~~~------~~D~iIttGG~s~g~~D~~~~~l~~~g~~~~~~v~~~P 289 (633)
T PRK14498 216 YTLAAAVEEAGGEPVRYGIVPDDEEELEAALRKALK------ECDLVLLSGGTSAGAGDVTYRVIEELGEVLVHGVAIKP 289 (633)
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHh------cCCEEEECCCCcCCCcccHHHHHHhcCCEEEeeEeecC
Confidence 3567778899999999985 456667766666543 3688888888876521 11122111111 111111
Q ss_pred HHHHHhHhhcCceEeEeccccCCHHHHHH-HHHHHHcC
Q 021654 101 ADALNTRSINNCNVLAVSGMSTSKESAVE-ILDTWLKT 137 (309)
Q Consensus 101 ~~A~~~r~hN~aNvl~lg~~~~~~~~a~~-i~~~~l~~ 137 (309)
-.-.++-..++.=|++|++--.+...+.+ ++.-+|..
T Consensus 290 G~~~~~g~~~~~~v~~LPG~p~aa~~~~~~~v~P~l~~ 327 (633)
T PRK14498 290 GKPTILGVIGGKPVVGLPGYPVSALTIFEEFVAPLLRK 327 (633)
T ss_pred CCCEEEEEECCEEEEECCCCHHHHHHHHHHHHHHHHHH
Confidence 11123334467789999998766655554 45555543
No 230
>PRK08105 flavodoxin; Provisional
Probab=41.88 E-value=84 Score=26.47 Aligned_cols=58 Identities=17% Similarity=0.121 Sum_probs=39.4
Q ss_pred CcEEEEEeCcccHH-HHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCCceEEEEecC-chh
Q 021654 12 PLKIIAGADSFGAE-LKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGT-GVG 81 (309)
Q Consensus 12 ~mki~i~~D~~g~~-lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~va~~v~~~~~~~~~~~gi~~Cgt-G~G 81 (309)
++.|+-||.-.-.+ +-+.|.+.|++.|++|.-.-..++.++ .. ...+.-|++|.| |.|
T Consensus 3 ~i~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~~~~~~~--------~~----~~~~~vi~~~sT~G~G 62 (149)
T PRK08105 3 KVGIFVGTVYGNALLVAEEAEAILTAQGHEVTLFEDPELSDW--------QP----YQDELVLVVTSTTGQG 62 (149)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHhCCCceEEechhhCCch--------hc----ccCCeEEEEECCCCCC
Confidence 35688888876544 778899999999988775543333221 11 235788888888 888
No 231
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=41.77 E-value=8.7 Score=41.35 Aligned_cols=59 Identities=22% Similarity=0.259 Sum_probs=35.6
Q ss_pred CCCcCCCeecCCceE-EEEEecEEE-E--EEeeCCeEEEecCCcEEEECCCCeEEEEEcCCce
Q 021654 222 AGSVEPAHHHTFGHD-LVVLQGKKS-V--WNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE 280 (309)
Q Consensus 222 pG~~~p~H~H~~~e~-vyVlsG~l~-v--~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~ 280 (309)
-|...+.-+||-.+. .|+-.+.-. + +.++..=++.-..||.|+||+|.||+++|.-.+.
T Consensus 764 ~~~~~~~v~hPIhDQS~YLd~~lr~RLkeEyGVe~WtfvQ~LGdAVfIPAGaPHQVrNLkSCi 826 (889)
T KOG1356|consen 764 QGHEVPKVHHPIHDQSWYLDRYLRRRLKEEYGVEPWTFVQFLGDAVFIPAGAPHQVRNLKSCI 826 (889)
T ss_pred hcCCCCcccCCCcccceeccHHHHHHHHHHhCCCccchhhcccceEEecCCCcHHhhhhhhHH
Confidence 344444445665444 553332110 0 1123344566779999999999999999987544
No 232
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=41.60 E-value=11 Score=30.15 Aligned_cols=49 Identities=20% Similarity=0.204 Sum_probs=31.0
Q ss_pred EEEEecCchhhhhhhcCCC------ceEEEEeCCHHHHHHhHhhcCceEeEecccc
Q 021654 72 GLVACGTGVGVAIFANKNP------GVFATTCLTPADALNTRSINNCNVLAVSGMS 121 (309)
Q Consensus 72 gi~~CgtG~G~~iaaNK~~------giraa~~~~~~~A~~~r~hN~aNvl~lg~~~ 121 (309)
-+++||+|.=.+|++||++ |+-+-.-. ...+......++..|+.+|..+
T Consensus 3 Ill~C~~GaSSs~la~km~~~a~~~gi~~~i~a-~~~~e~~~~~~~~Dvill~PQv 57 (99)
T cd05565 3 VLVLCAGGGTSGLLANALNKGAKERGVPLEAAA-GAYGSHYDMIPDYDLVILAPQM 57 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE-eeHHHHHHhccCCCEEEEcChH
Confidence 5799999999999999984 44322111 1122233345677788777664
No 233
>PRK00120 dITP/XTP pyrophosphatase; Reviewed
Probab=41.34 E-value=46 Score=29.76 Aligned_cols=73 Identities=25% Similarity=0.376 Sum_probs=48.6
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEE---ecCC-------CCcchhHHHHHHhhcCCCCCCCceEEEEecCchhh
Q 021654 13 LKIIAGADSFGAELKDALVSHLRSLNIDVED---LGTS-------DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGV 82 (309)
Q Consensus 13 mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d---~G~~-------~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~ 82 (309)
|||++++-..+ .+ +++++.|...|++|+- ++.. +|.+.|..=|+.+.+ ....-++.+-||+=+
T Consensus 1 m~i~~aT~N~~-K~-~E~~~il~~~~~~i~~~~~~~~~e~~E~~~s~~enA~~KA~~~~~-----~~~~pviaDDSGL~i 73 (196)
T PRK00120 1 MKIVLASHNAG-KL-RELKALLAPFGIEVVSQGELGVPEPEETGTTFVENALIKARHAAK-----ATGLPALADDSGLCV 73 (196)
T ss_pred CEEEEEcCCHH-HH-HHHHHHHhhcCCEEEehhhcCCCCCCCCCCCHHHHHHHHHHHHHH-----HHCCCEEEEcCEEEE
Confidence 78999887765 22 5677788777877763 3321 466677766666654 223458888887543
Q ss_pred hhhhcCCCceE
Q 021654 83 AIFANKNPGVF 93 (309)
Q Consensus 83 ~iaaNK~~gir 93 (309)
. |.|.+|||+
T Consensus 74 ~-aL~g~PGvy 83 (196)
T PRK00120 74 D-ALGGAPGVY 83 (196)
T ss_pred c-ccCCCCchh
Confidence 3 578999984
No 234
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=41.17 E-value=69 Score=27.26 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=19.9
Q ss_pred eEEEecCCcEEEECCCCeEEEE
Q 021654 253 ERFDLTVGDYLFTPAGDVHRVK 274 (309)
Q Consensus 253 ~~~~L~pGD~v~IP~g~~H~~~ 274 (309)
....|.||+++.+.|+.+|+..
T Consensus 106 ~~v~l~~G~F~iffP~daH~P~ 127 (149)
T PRK10202 106 ETVEVHEGQIVICDIHEAYRFI 127 (149)
T ss_pred cEEEeCCCeEEEECCcccccCC
Confidence 3678999999999999999986
No 235
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=41.00 E-value=30 Score=34.09 Aligned_cols=60 Identities=27% Similarity=0.264 Sum_probs=40.7
Q ss_pred cCCCcCCCe---ecCCceEEEEEecEEEEEEeeCCe----------------------------EEEecCCcEEEECCCC
Q 021654 221 KAGSVEPAH---HHTFGHDLVVLQGKKSVWNLTKGE----------------------------RFDLTVGDYLFTPAGD 269 (309)
Q Consensus 221 ~pG~~~p~H---~H~~~e~vyVlsG~l~v~i~~~~~----------------------------~~~L~pGD~v~IP~g~ 269 (309)
++|+.+|.| +|.. -+...+-|.-+.-+.-.++ +..-.||..||+|.|=
T Consensus 206 p~gSwtp~HaDVf~s~-swS~nicG~KrWl~~pP~qe~~l~dr~gnlp~~~~~~~ld~~~~~~lei~Qepge~VFvPsGW 284 (427)
T KOG2131|consen 206 PAGSWTPFHADVFHSP-SWSVNICGRKRWLLYPPEQEQTLADRYGNLPLPSWITKLDLFRGPLLEIFQEPGETVFVPSGW 284 (427)
T ss_pred cCCCCCccchhhhcCC-cceeeeecceeEEEeChHHhhhhhhhccCcCCccccccccccccchhhhhccCCceeeccCcc
Confidence 467888988 5532 2345566776643322222 1234699999999999
Q ss_pred eEEEEEcCCceE
Q 021654 270 VHRVKYYEETEF 281 (309)
Q Consensus 270 ~H~~~n~gd~~~ 281 (309)
-|++.|.+|+.-
T Consensus 285 ~hQV~NL~dTIS 296 (427)
T KOG2131|consen 285 HHQVLNLGDTIS 296 (427)
T ss_pred ccccccccceee
Confidence 999999998764
No 236
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=40.93 E-value=1.1e+02 Score=28.23 Aligned_cols=61 Identities=16% Similarity=0.114 Sum_probs=38.0
Q ss_pred CCcEEEEEeCcccHH------HHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCCceEEEEecCchh
Q 021654 11 HPLKIIAGADSFGAE------LKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVG 81 (309)
Q Consensus 11 ~~mki~i~~D~~g~~------lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G 81 (309)
++|||+|.+....-+ =-..+.+.|++.||+|+=+...+ .+.+.+.. ...|..+..|++..|
T Consensus 3 ~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~------~~~~~~~~----~~~D~v~~~~~g~~~ 69 (304)
T PRK01372 3 MFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGE------DIAAQLKE----LGFDRVFNALHGRGG 69 (304)
T ss_pred CCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCc------chHHHhcc----CCCCEEEEecCCCCC
Confidence 456899988433322 23588999999999997665432 12233434 456777777765444
No 237
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=40.83 E-value=68 Score=30.85 Aligned_cols=103 Identities=16% Similarity=0.199 Sum_probs=54.1
Q ss_pred HHHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhh----hhhcCCCc-e-EEEEeCC
Q 021654 28 DALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVA----IFANKNPG-V-FATTCLT 99 (309)
Q Consensus 28 ~~l~~~l~~~g~ev~d~G~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~----iaaNK~~g-i-raa~~~~ 99 (309)
..|.+.|++.|+++.+.+. ++...+...+.+.+.+ .+|.-|+-.|||.|-. =+..+.-+ | +-.+--.
T Consensus 182 ~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~ai~~~~~~-----g~DlIItTGGtsvg~~D~tp~Ai~~~G~ei~~~Gv~v~ 256 (312)
T cd03522 182 PVLRARLAALGVELVEQVIVPHDEAAIAAAIAEALEA-----GAELLILTGGASVDPDDVTPAAIRAAGGEVIRYGMPVD 256 (312)
T ss_pred HHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhcC-----CCCEEEEeCCcccCCcchHHHHHHhcCceEEEeeeccc
Confidence 4677778899999999885 3455566666555432 2565555555555432 01111100 1 1111112
Q ss_pred HHHHHHhHhhcCceEeEeccccCCHHH-HHHHHHHHH
Q 021654 100 PADALNTRSINNCNVLAVSGMSTSKES-AVEILDTWL 135 (309)
Q Consensus 100 ~~~A~~~r~hN~aNvl~lg~~~~~~~~-a~~i~~~~l 135 (309)
|-.-.+.-..++.=|++|++.-.+... ..+++--.+
T Consensus 257 PG~~l~~g~~~~~pVigLPG~p~s~~~t~~d~VLprl 293 (312)
T cd03522 257 PGNLLLLGYLGGVPVIGLPGCARSPKLNGFDLVLPRL 293 (312)
T ss_pred CCceEEEEEECCEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 211111222477889999998777653 344443333
No 238
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=40.30 E-value=30 Score=30.90 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=23.9
Q ss_pred cEEEEEeCcccHH--HHHHHHHHHHhCCCcEEEecC
Q 021654 13 LKIIAGADSFGAE--LKDALVSHLRSLNIDVEDLGT 46 (309)
Q Consensus 13 mki~i~~D~~g~~--lk~~l~~~l~~~g~ev~d~G~ 46 (309)
|||.|.+|. |+. -=..|.+.|++.||+|.=+-+
T Consensus 1 M~ILlTNDD-Gi~a~Gi~aL~~~L~~~g~~V~VvAP 35 (196)
T PF01975_consen 1 MRILLTNDD-GIDAPGIRALAKALSALGHDVVVVAP 35 (196)
T ss_dssp SEEEEE-SS--TTSHHHHHHHHHHTTTSSEEEEEEE
T ss_pred CeEEEEcCC-CCCCHHHHHHHHHHHhcCCeEEEEeC
Confidence 899999998 454 235788888888899986543
No 239
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=40.27 E-value=15 Score=36.03 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=18.2
Q ss_pred EEEecCCcEEEECCCCeEEEEE
Q 021654 254 RFDLTVGDYLFTPAGDVHRVKY 275 (309)
Q Consensus 254 ~~~L~pGD~v~IP~g~~H~~~n 275 (309)
...|+||+.+|+|+|++|.+..
T Consensus 251 ~v~L~pGeaifl~a~~~HAYl~ 272 (373)
T PF01238_consen 251 YVELQPGEAIFLPAGEPHAYLS 272 (373)
T ss_dssp EEEE-TT-EEEEHTTHHEEEEE
T ss_pred EEEecCCceEEecCCCcccccc
Confidence 6799999999999999998765
No 240
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=39.37 E-value=1.6e+02 Score=26.11 Aligned_cols=66 Identities=11% Similarity=0.033 Sum_probs=38.3
Q ss_pred EEcCCCcCCCeecCCceEEEEEecEEEEEEee-CCeE---EEecCCcEEEEC-----CCCeEEEEEcCCceEEEE
Q 021654 219 RFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLT-KGER---FDLTVGDYLFTP-----AGDVHRVKYYEETEFFIK 284 (309)
Q Consensus 219 ~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~-~~~~---~~L~pGD~v~IP-----~g~~H~~~n~gd~~~~i~ 284 (309)
++++|...-..--+....++|++|.+.+.... +|+. ..+.|||++=.. ...++.+.+.+++.++..
T Consensus 35 ~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~~~~~~~~~A~~~~~i~~i 109 (226)
T PRK10402 35 HFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDKDHETKAVQAIEECWCLAL 109 (226)
T ss_pred eeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcCCCCCccEEEeccEEEEEE
Confidence 45555554333334556799999999985432 3333 457799966532 223345666666665433
No 241
>PF06999 Suc_Fer-like: Sucrase/ferredoxin-like; InterPro: IPR009737 This family contains a number of bacterial and eukaryotic proteins approximately 400 residues long that resemble ferredoxin and appear to have sucrolytic activity [].
Probab=39.10 E-value=59 Score=29.20 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=46.7
Q ss_pred ceEEEEecCchhhhhhhcCCCceEEEEeCCHHHHHHhHhhcC--------------------ceEeEe----ccc----c
Q 021654 70 TRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINN--------------------CNVLAV----SGM----S 121 (309)
Q Consensus 70 ~~gi~~CgtG~G~~iaaNK~~giraa~~~~~~~A~~~r~hN~--------------------aNvl~l----g~~----~ 121 (309)
..-||||+=|. +-.|||.+--+.-+++.+...+ +|||++ +.. -
T Consensus 132 ~~~iLVCtHg~---------RD~rCg~~Gp~l~~~l~~~~~~~~l~~~~V~~iSHiGGHkfAgNvIiy~~~~p~g~wyGr 202 (230)
T PF06999_consen 132 KPLILVCTHGK---------RDKRCGILGPPLARELEKELRERGLSRDRVWEISHIGGHKFAGNVIIYSKPKPDGIWYGR 202 (230)
T ss_pred CCEEEEcCCCC---------cCCchhcccHHHHHHHHHHhhhcCCccceEEEecccccceecCeEEEEecCCCcEEEEEe
Confidence 56789999874 7899999988777777765533 899999 666 3
Q ss_pred CCHHHHHHHHHH-HHcC
Q 021654 122 TSKESAVEILDT-WLKT 137 (309)
Q Consensus 122 ~~~~~a~~i~~~-~l~~ 137 (309)
+.++.+..||++ ..+.
T Consensus 203 v~p~~v~~iv~~t~~~g 219 (230)
T PF06999_consen 203 VTPEDVEGIVDATILDG 219 (230)
T ss_pred eCHHHHHHHHHHHHhCC
Confidence 689999999999 6554
No 242
>PRK14823 putative deoxyribonucleoside-triphosphatase; Provisional
Probab=38.10 E-value=41 Score=29.96 Aligned_cols=72 Identities=22% Similarity=0.282 Sum_probs=47.1
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEE---EecC--------CCCcchhHHHHHHhhcCCCCCCCceEEEEecCchh
Q 021654 13 LKIIAGADSFGAELKDALVSHLRSLNIDVE---DLGT--------SDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVG 81 (309)
Q Consensus 13 mki~i~~D~~g~~lk~~l~~~l~~~g~ev~---d~G~--------~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G 81 (309)
|||+++|-..+ .+ +++++.|.. +++|+ |++. .+|.+.|..=|+.+.+ ....-++.+-||+=
T Consensus 1 mki~~aT~N~~-K~-~E~~~il~~-~~~v~~~~~~~~~~~~~E~~~tf~enA~~KA~~~~~-----~~~~pvlaDDSGL~ 72 (191)
T PRK14823 1 MKLVFATNNKH-KL-EEIRSILPE-KIELLSLSDIGCHEDIPETADTLEGNALLKAEYVYK-----KYGYDCFADDTGLE 72 (191)
T ss_pred CEEEEECCChh-HH-HHHHHHhcC-CCEEEehhhcCCCCCCCCCCCCHHHHHHHHHHHHHH-----HHCCCEEEecCEEE
Confidence 78999998876 33 456677765 67777 3331 1466677666776654 22345888888754
Q ss_pred hhhhhcCCCceE
Q 021654 82 VAIFANKNPGVF 93 (309)
Q Consensus 82 ~~iaaNK~~gir 93 (309)
+. +.|.+|||+
T Consensus 73 v~-aL~G~PGvy 83 (191)
T PRK14823 73 VE-ALNGAPGVY 83 (191)
T ss_pred Ee-ccCCCcchH
Confidence 43 579999984
No 243
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=38.10 E-value=1.8e+02 Score=24.84 Aligned_cols=65 Identities=14% Similarity=0.096 Sum_probs=35.8
Q ss_pred EEEcCCCcCCCeec--CCceEEEEEecEEEEEEee-CCeE---EEecCCcEEEECC----CCeEEEEEcCCceEE
Q 021654 218 VRFKAGSVEPAHHH--TFGHDLVVLQGKKSVWNLT-KGER---FDLTVGDYLFTPA----GDVHRVKYYEETEFF 282 (309)
Q Consensus 218 ~~l~pG~~~p~H~H--~~~e~vyVlsG~l~v~i~~-~~~~---~~L~pGD~v~IP~----g~~H~~~n~gd~~~~ 282 (309)
.++++|...-..-- +...+++|++|.+++.... +|+. ..+.|||++=.++ ..++...+.+++.++
T Consensus 9 ~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~~~~~~~~~~A~~~~~v~ 83 (202)
T PRK13918 9 VTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALAGAERAYFAEAVTDSRID 83 (202)
T ss_pred eEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhcCCCCCceEEEcCceEEE
Confidence 34555554433222 2355688999999985432 3333 5568999754331 123344555555543
No 244
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=36.92 E-value=42 Score=35.65 Aligned_cols=48 Identities=21% Similarity=0.233 Sum_probs=34.6
Q ss_pred HHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCCceEEEEecCchh
Q 021654 29 ALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVG 81 (309)
Q Consensus 29 ~l~~~l~~~g~ev~d~G~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G 81 (309)
.|.+.|++.|++|++++. +++..+...+.+.+. .++|.-|+-.|||.|
T Consensus 213 ~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~-----~~~DlvItTGGts~G 262 (659)
T PLN02699 213 MLLAAAIQQQCKVVDLGIARDDEEELERILDEAIS-----SGVDILLTSGGVSMG 262 (659)
T ss_pred HHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhc-----CCCCEEEECCCCCCC
Confidence 577788999999999995 456666666655543 246777777777776
No 245
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=36.75 E-value=43 Score=33.35 Aligned_cols=99 Identities=16% Similarity=0.184 Sum_probs=58.3
Q ss_pred HHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhh----hhhhcC-----CCceEEEEe
Q 021654 29 ALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGV----AIFANK-----NPGVFATTC 97 (309)
Q Consensus 29 ~l~~~l~~~g~ev~d~G~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~----~iaaNK-----~~giraa~~ 97 (309)
.|...|++.|+++++++. ++...+...+.++. .++|.-|+..|++.|- -=+..+ |.||.
T Consensus 208 ~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~------~~~DlvIttGG~S~G~~D~~~~al~~lG~~~f~~v~---- 277 (411)
T PRK10680 208 AVHLMLEQLGCEVINLGIIRDDPHALRAAFIEAD------SQADVVISSGGVSVGEADYTKTILEELGEIAFWKLA---- 277 (411)
T ss_pred HHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhc------cCCCEEEEcCCCCCCCcchHHHHHHhcCcEEEEEEE----
Confidence 577888999999999985 34555555554432 4578888888888772 222233 33332
Q ss_pred CCHHHHHHhHhhcCceEeEeccccCCHHHHH-HHHHHHHcC
Q 021654 98 LTPADALNTRSINNCNVLAVSGMSTSKESAV-EILDTWLKT 137 (309)
Q Consensus 98 ~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~-~i~~~~l~~ 137 (309)
-.|=.-.+....++.=|++|++.-.+...+. .++.-+|..
T Consensus 278 ~kPGkp~~~g~~~~~~v~gLPGnP~sa~~~~~~~v~P~l~~ 318 (411)
T PRK10680 278 IKPGKPFAFGKLSNSWFCGLPGNPVSAALTFYQLVQPLLAK 318 (411)
T ss_pred EecCcceEEEEECCeEEEECCCCHHHHHHHHHHHHHHHHHH
Confidence 1111111122347778999999876665543 345555533
No 246
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=36.50 E-value=2.3e+02 Score=27.45 Aligned_cols=115 Identities=12% Similarity=0.176 Sum_probs=72.4
Q ss_pred EEEEE--eCcccHH-HHHHHHHHHHhCCC---cEEEecCCCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhc
Q 021654 14 KIIAG--ADSFGAE-LKDALVSHLRSLNI---DVEDLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFAN 87 (309)
Q Consensus 14 ki~i~--~D~~g~~-lk~~l~~~l~~~g~---ev~d~G~~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaN 87 (309)
+|+|. =.|-+.+ .++-+++.|++.|+ ++...-...-+-.+..+++.+.. ...|.-|.| ++--...+.+
T Consensus 32 ~VaI~~~veHpaLd~~~~G~~~aLk~~G~~n~~i~~~na~~~~~~a~~iarql~~----~~~dviv~i--~tp~Aq~~~s 105 (322)
T COG2984 32 TVAITQFVEHPALDAAREGVKEALKDAGYKNVKIDYQNAQGDLGTAAQIARQLVG----DKPDVIVAI--ATPAAQALVS 105 (322)
T ss_pred eEEEEEeecchhHHHHHHHHHHHHHhcCccCeEEEeecCCCChHHHHHHHHHhhc----CCCcEEEec--CCHHHHHHHH
Confidence 45555 4676666 56789999999999 66666666677788999999886 333333333 2223333444
Q ss_pred CCCc--eEEEEeCCHHHHHHhHh--hcCceEeEeccccCCHHHHHHHHHHHH
Q 021654 88 KNPG--VFATTCLTPADALNTRS--INNCNVLAVSGMSTSKESAVEILDTWL 135 (309)
Q Consensus 88 K~~g--iraa~~~~~~~A~~~r~--hN~aNvl~lg~~~~~~~~a~~i~~~~l 135 (309)
..++ |.++-+.|+..|++-.+ -++.||--+.--. -.+.-.+.+++-|
T Consensus 106 ~~~~iPVV~aavtd~v~a~Lv~~~~~pg~NvTGvsD~~-~v~q~i~lik~~~ 156 (322)
T COG2984 106 ATKTIPVVFAAVTDPVGAKLVKSLEQPGGNVTGVSDLL-PVAQQIELIKALL 156 (322)
T ss_pred hcCCCCEEEEccCchhhccCCccccCCCCceeecCCcc-hHHHHHHHHHHhC
Confidence 4444 78888999999999886 3557776554333 2233334444444
No 247
>PRK14314 glmM phosphoglucosamine mutase; Provisional
Probab=36.37 E-value=1.5e+02 Score=29.52 Aligned_cols=63 Identities=14% Similarity=0.129 Sum_probs=39.5
Q ss_pred CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-C--------CcchhHHHHHHhhcCCCCCCCceEEEEecCc
Q 021654 11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-D--------YYSIGAEVGRRVSSSDSSDTTTRGLVACGTG 79 (309)
Q Consensus 11 ~~mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~-~--------y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG 79 (309)
.++||+|-+-|.. -...+.+.|++.|.+|+-+-.+ | .+..-..+.+.|.+ ..+|.||.+.|-|
T Consensus 176 ~~~kVvvD~~~Ga--~~~~~~~il~~lg~~v~~~~~~~dg~~~~~~~~~~~~~~l~~~v~~----~~adlGia~DgDg 247 (450)
T PRK14314 176 KGLKIVLDCANGA--AYKVAPAVFEELGAEVICIGVEPNGLNINAGCGSLHPEVIAKAVIE----HGADLGIALDGDA 247 (450)
T ss_pred CCCEEEEECCCch--HHHHHHHHHHHcCCeEEEeccCCCCCCCCCCCCCCCHHHHHHHHHh----cCCCeEEEEcCCC
Confidence 4789999887754 4667777888899999865432 1 12333466777765 3444444444443
No 248
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=35.94 E-value=46 Score=33.31 Aligned_cols=89 Identities=19% Similarity=0.241 Sum_probs=52.8
Q ss_pred HHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCCceEEEEecCchh----hhhhhcCC-----CceEEEEe
Q 021654 29 ALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVG----VAIFANKN-----PGVFATTC 97 (309)
Q Consensus 29 ~l~~~l~~~g~ev~d~G~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G----~~iaaNK~-----~giraa~~ 97 (309)
.|...|++.|+++++++. ++...+...+.+.+. .+|.-|+-.|++.| +-=+..+. .||.
T Consensus 224 ~L~a~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~------~~DlIItTGG~S~G~~D~v~~~l~~~G~~~~~~v~---- 293 (419)
T PRK14690 224 MLLALARRWGHAPVDLGRVGDDRAALAARLDRAAA------EADVILTSGGASAGDEDHVSALLREAGAMQSWRIA---- 293 (419)
T ss_pred HHHHHHHHCCCEEEEEeeeCCCHHHHHHHHHHhCc------cCCEEEEcCCccCCCcchHHHHHHhcCCEEEccee----
Confidence 677788999999999996 355556666655542 46777777778777 22233332 2221
Q ss_pred CCHHHHHHhHhhcCceEeEeccccCCHHHH
Q 021654 98 LTPADALNTRSINNCNVLAVSGMSTSKESA 127 (309)
Q Consensus 98 ~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a 127 (309)
-.|=...+....++.=|++|++.-++....
T Consensus 294 mkPGkp~~~~~~~~~pv~gLPGnP~aa~~~ 323 (419)
T PRK14690 294 LKPGRPLALGLWQGVPVFGLPGNPVAALVC 323 (419)
T ss_pred ecCCCceEEEEECCeEEEECCCCHHHHHHH
Confidence 111111122334677799999875554444
No 249
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=35.78 E-value=2.1e+02 Score=25.15 Aligned_cols=63 Identities=11% Similarity=0.062 Sum_probs=35.4
Q ss_pred EEcCCCcCCCeecCCceEEEEEecEEEEEEee-CCeE---EEecCCcEEEEC----CCCeEEEEEcCCceE
Q 021654 219 RFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLT-KGER---FDLTVGDYLFTP----AGDVHRVKYYEETEF 281 (309)
Q Consensus 219 ~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~-~~~~---~~L~pGD~v~IP----~g~~H~~~n~gd~~~ 281 (309)
.+++|...-.---+...+++|++|.+.+.... +|+. ..+.|||++-.+ ...++.....+++.+
T Consensus 41 ~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~~~~~~~~~~~a~~~~~i 111 (235)
T PRK11161 41 PIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAIGSGQHPSFAQALETSMV 111 (235)
T ss_pred eecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccccCCCCcceEEEeccEEE
Confidence 46666655433334556789999999986432 2333 234799876432 222334455555444
No 250
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=35.43 E-value=25 Score=31.75 Aligned_cols=83 Identities=22% Similarity=0.270 Sum_probs=51.8
Q ss_pred CcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCC----CceEEEEeCCHHH-H------------------HH
Q 021654 49 YYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKN----PGVFATTCLTPAD-A------------------LN 105 (309)
Q Consensus 49 y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~----~giraa~~~~~~~-A------------------~~ 105 (309)
|+..|.++++.+... | -+++||.|.|++=++||- -|...++.-+... . +.
T Consensus 32 ~~~~a~~lg~~la~~---g----~~V~tGG~~GiMea~~~gA~~~gg~~vGi~p~~~~~~e~~~~~~~~l~~~~~~~~Rk 104 (205)
T COG1611 32 YYELARELGRELAKR---G----LLVITGGGPGVMEAVARGALEAGGLVVGILPGLLHEQEPPNYEVIELITGMDFAERK 104 (205)
T ss_pred HHHHHHHHHHHHHhC---C----cEEEeCCchhhhhHHHHHHHHcCCeEEEecCCCchhhccCccccceeeecCCHHHHH
Confidence 889999999999872 2 788999999999888872 4444444432111 1 11
Q ss_pred hH--hhcCceEeEeccccCCHHHHHHHHHHHHcCCCC
Q 021654 106 TR--SINNCNVLAVSGMSTSKESAVEILDTWLKTPFK 140 (309)
Q Consensus 106 ~r--~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~ 140 (309)
.. +.-|+ +++||+.+=+.+++.+++ +|..++.-
T Consensus 105 ~~~~~~ada-~V~~pGG~GTleEl~e~l-t~~q~g~~ 139 (205)
T COG1611 105 RAMVRSADA-FIVLPGGFGTLEELFEAL-TLGQTGVH 139 (205)
T ss_pred HHHHHhCCE-EEEeCCCcchHHHHHHHH-HHhhCCcc
Confidence 11 11222 566777766666655544 57776665
No 251
>PHA02890 hypothetical protein; Provisional
Probab=35.31 E-value=1.6e+02 Score=27.69 Aligned_cols=39 Identities=8% Similarity=0.051 Sum_probs=33.1
Q ss_pred EEEEecEEEEEEeeCCe--EEEecCCcEEEECCCCeEEEEE
Q 021654 237 LVVLQGKKSVWNLTKGE--RFDLTVGDYLFTPAGDVHRVKY 275 (309)
Q Consensus 237 vyVlsG~l~v~i~~~~~--~~~L~pGD~v~IP~g~~H~~~n 275 (309)
+.+|+|+.++....+++ +..+..|+.+.+.-+..|+...
T Consensus 96 VlCL~Gs~~In~~~~d~~iS~~I~kGeaF~mdv~t~H~i~T 136 (278)
T PHA02890 96 VACIEGSCKINVNIGDREISDHIHENQGFIMDVGLDHAIDS 136 (278)
T ss_pred EEEeCCeEEEEEecCCceeeeeeecCceEEEEccceEEEEc
Confidence 77899999997665554 5889999999999999999865
No 252
>PRK09453 phosphodiesterase; Provisional
Probab=34.73 E-value=63 Score=27.75 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=21.7
Q ss_pred cEEEEEeC-cccHHHHHHHHHHHHhCCCc-EEEec
Q 021654 13 LKIIAGAD-SFGAELKDALVSHLRSLNID-VEDLG 45 (309)
Q Consensus 13 mki~i~~D-~~g~~lk~~l~~~l~~~g~e-v~d~G 45 (309)
|||++.|| |..++--+.+.+.+++.+.+ |+-.|
T Consensus 1 mri~viSD~Hg~~~~~~~~l~~~~~~~~d~ii~lG 35 (182)
T PRK09453 1 MKLMFASDTHGSLPATEKALELFAQSGADWLVHLG 35 (182)
T ss_pred CeEEEEEeccCCHHHHHHHHHHHHhcCCCEEEEcc
Confidence 89999999 44444346677777776654 44334
No 253
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=34.59 E-value=77 Score=24.09 Aligned_cols=20 Identities=20% Similarity=0.311 Sum_probs=17.4
Q ss_pred ecCCcEEEECC-CCeEEEEEc
Q 021654 257 LTVGDYLFTPA-GDVHRVKYY 276 (309)
Q Consensus 257 L~pGD~v~IP~-g~~H~~~n~ 276 (309)
..+|+.+++++ ...|++.-.
T Consensus 66 p~~g~~v~F~~~~~~H~v~~v 86 (100)
T PF13640_consen 66 PKPGRLVIFPSDNSLHGVTPV 86 (100)
T ss_dssp -BTTEEEEEESCTCEEEEEEE
T ss_pred CCCCEEEEEeCCCCeecCccc
Confidence 78999999999 999998776
No 254
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=34.50 E-value=1.4e+02 Score=27.76 Aligned_cols=64 Identities=13% Similarity=0.144 Sum_probs=41.0
Q ss_pred cEEEEE--eCc-ccHHHHHHHHHHHHhCCCcEEEecCC--CCcchhHHHHHHhhcCCCCCCCceEEEEecCchhh
Q 021654 13 LKIIAG--ADS-FGAELKDALVSHLRSLNIDVEDLGTS--DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGV 82 (309)
Q Consensus 13 mki~i~--~D~-~g~~lk~~l~~~l~~~g~ev~d~G~~--~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~ 82 (309)
-||++- +|. .|-.+.+.+++.+++.|++|+..... +-.|+...+.+...+ ..|. |++++++-..
T Consensus 137 ~~v~~l~~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~i~~~-----~~d~-vi~~~~~~~~ 205 (344)
T cd06348 137 KRVAVFYAQDDAFSVSETEIFQKALRDQGLNLVTVQTFQTGDTDFQAQITAVLNS-----KPDL-IVISALAADG 205 (344)
T ss_pred eEEEEEEeCCchHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhc-----CCCE-EEECCcchhH
Confidence 366544 345 77789999999999999999865443 245666666555443 4454 4555455333
No 255
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=34.46 E-value=33 Score=29.91 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=27.8
Q ss_pred cEEEEEeCcccHH------HHHHHHHHHHhCCCcEEE
Q 021654 13 LKIIAGADSFGAE------LKDALVSHLRSLNIDVED 43 (309)
Q Consensus 13 mki~i~~D~~g~~------lk~~l~~~l~~~g~ev~d 43 (309)
|||++-+-|+||. +-+++++.|+++|+.|.-
T Consensus 52 lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~ 88 (186)
T COG1751 52 LKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLT 88 (186)
T ss_pred ceEEEEEeecccccCCceecCHHHHHHHHHcCceeee
Confidence 8999999999998 557899999999999884
No 256
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=33.99 E-value=49 Score=34.67 Aligned_cols=103 Identities=15% Similarity=0.218 Sum_probs=62.7
Q ss_pred HHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCCceEEEEecCchh----hhhhhcCCCceEE-EEeCCHH
Q 021654 29 ALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVG----VAIFANKNPGVFA-TTCLTPA 101 (309)
Q Consensus 29 ~l~~~l~~~g~ev~d~G~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G----~~iaaNK~~gira-a~~~~~~ 101 (309)
.|...|++.|+++.++|. ++...+...+.+.+. ++|.-|+..|||.| +-=+..++-.++. .+--.|-
T Consensus 398 ~L~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~------~~DlIIttGG~s~G~~D~~~~al~~lG~i~f~~v~~kPG 471 (597)
T PRK14491 398 TIKAMAKKLGCEVIDLGIIEDSEAALEATLEQAAA------QADVVISSGGVSVGDADYIKTALAKLGQIDFWRINMRPG 471 (597)
T ss_pred HHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhh------cCCEEEEcCCccCCCcccHHHHHHhcCcEEEEEEEeecC
Confidence 467778889999999985 455556555555532 47888888888888 3334444433322 1222222
Q ss_pred HHHHhHhhcCceEeEeccccCCHHHHH-HHHHHHHcC
Q 021654 102 DALNTRSINNCNVLAVSGMSTSKESAV-EILDTWLKT 137 (309)
Q Consensus 102 ~A~~~r~hN~aNvl~lg~~~~~~~~a~-~i~~~~l~~ 137 (309)
....+-..++.=|++|++.-.+...+. .++.-.|..
T Consensus 472 kp~~~g~~~~~~v~~LPGnP~aa~~~~~~~v~P~l~~ 508 (597)
T PRK14491 472 RPLAFGQIGDSPFFGLPGNPVAVMVSFLQFVEPALRK 508 (597)
T ss_pred CcEEEEEECCEEEEEccCCcHHHHHHHHHHHHHHHHH
Confidence 222334457888999999977665553 444444433
No 257
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=33.94 E-value=1.9e+02 Score=25.62 Aligned_cols=60 Identities=13% Similarity=0.208 Sum_probs=44.1
Q ss_pred EEEEeCcccHHHH-----------------HHHHHHHHhCCCcEEEecC-CCCcchhHHHHHHhhcCCCCCCCceEEEEe
Q 021654 15 IIAGADSFGAELK-----------------DALVSHLRSLNIDVEDLGT-SDYYSIGAEVGRRVSSSDSSDTTTRGLVAC 76 (309)
Q Consensus 15 i~i~~D~~g~~lk-----------------~~l~~~l~~~g~ev~d~G~-~~y~~~a~~va~~v~~~~~~~~~~~gi~~C 76 (309)
.+||+|.+...|. +.++++++++|.+++-+=. .|+.|+-.++-..+.. ..+.-++++
T Consensus 24 ~~i~aDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p~~KD~TD~e~Al~~~~~~-----~~~~i~i~G 98 (208)
T cd07995 24 LIIAADGGANHLLDLGIVPDLIIGDFDSISPEVLEYYKSKGVEIIHFPDEKDFTDFEKALKLALER-----GADEIVILG 98 (208)
T ss_pred EEEEEChHHHHHHHcCCCCCEEEecCcCCCHHHHHHHHhcCCeEEECCCCCCCCHHHHHHHHHHHc-----CCCEEEEEc
Confidence 5678887665544 5788888888999998887 6899987777666654 335667777
Q ss_pred cCc
Q 021654 77 GTG 79 (309)
Q Consensus 77 gtG 79 (309)
++|
T Consensus 99 a~G 101 (208)
T cd07995 99 ATG 101 (208)
T ss_pred cCC
Confidence 777
No 258
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=33.85 E-value=1e+02 Score=26.43 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=29.0
Q ss_pred HhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCC
Q 021654 107 RSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKA 141 (309)
Q Consensus 107 r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~ 141 (309)
..|+|-|.+..-+..++.+..+++++.+-..+|.+
T Consensus 61 ~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 95 (188)
T TIGR00678 61 GNHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQES 95 (188)
T ss_pred CCCCcEEEeccccCcCCHHHHHHHHHHHccCcccC
Confidence 45777888887777889999999999988888875
No 259
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.85 E-value=3.2e+02 Score=25.66 Aligned_cols=103 Identities=10% Similarity=0.029 Sum_probs=57.1
Q ss_pred cEEEEEe---CcccHHHHHHHHHHHHhCCCcEEEec--CCCCcchhHHHH-HHhhcCCCCCCCceEEEEecCchhhhhhh
Q 021654 13 LKIIAGA---DSFGAELKDALVSHLRSLNIDVEDLG--TSDYYSIGAEVG-RRVSSSDSSDTTTRGLVACGTGVGVAIFA 86 (309)
Q Consensus 13 mki~i~~---D~~g~~lk~~l~~~l~~~g~ev~d~G--~~~y~~~a~~va-~~v~~~~~~~~~~~gi~~CgtG~G~~iaa 86 (309)
|||+|-. +....++-+.|.++|+++|++|.=.- +....++.. .+ ..... .+.|..|++-|=|.=. -++
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~-~~~~~~~~----~~~d~vi~iGGDGTlL-~a~ 74 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSE-EDVLPLEE----MDVDFIIAIGGDGTIL-RIE 74 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccc-cccccccc----cCCCEEEEEeCcHHHH-HHH
Confidence 7888862 23445677899999999998876321 000111100 01 12222 3567777777776322 122
Q ss_pred cCCCceEEEEeCCHHHHHHhHhhcCceEeEecccc------CCHHHHHHHHHHHHcCCCC
Q 021654 87 NKNPGVFATTCLTPADALNTRSINNCNVLAVSGMS------TSKESAVEILDTWLKTPFK 140 (309)
Q Consensus 87 NK~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~------~~~~~a~~i~~~~l~~~f~ 140 (309)
| .. .-+.-|+.+...- +.++...+.++.+++.+|.
T Consensus 75 ~-~~------------------~~~~pi~gIn~G~lGFl~~~~~~~~~~~l~~i~~g~~~ 115 (277)
T PRK03708 75 H-KT------------------KKDIPILGINMGTLGFLTEVEPEETFFALSRLLEGDYF 115 (277)
T ss_pred H-hc------------------CCCCeEEEEeCCCCCccccCCHHHHHHHHHHHHcCCce
Confidence 2 11 1144455444442 4577888899999888774
No 260
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=33.51 E-value=2.8e+02 Score=26.23 Aligned_cols=114 Identities=14% Similarity=0.037 Sum_probs=74.7
Q ss_pred EEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCCCc-e
Q 021654 14 KIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKNPG-V 92 (309)
Q Consensus 14 ki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~~g-i 92 (309)
.++|-.-|. .+ ..+.+.|+++|++|+|-.+ -|..-..+.++...+ +...-|++.-.+=--.++.+-+-. =
T Consensus 65 ~~ViirAHG-v~--~~~~~~l~~~g~~viDaTC-P~V~k~~~~v~~~~~-----~Gy~iviiG~~~HpEv~gi~g~~~~~ 135 (281)
T PF02401_consen 65 DTVIIRAHG-VP--PEVYEELKERGLEVIDATC-PFVKKIHKIVRKYAK-----EGYQIVIIGDKNHPEVIGILGYAPEE 135 (281)
T ss_dssp EEEEE-TT------HHHHHHHHHTTEEEEE----HHHHHHHHHHHHHHH-----CT-EEEEES-TT-HHHHHHHCCHHTS
T ss_pred CEEEEeCCC-CC--HHHHHHHHHcCCEEEECCC-hhHHHHHHHHHHHHh-----cCCEEEEECCCCCceEEEecccccCC
Confidence 366666673 33 5677888999999999764 344455666666654 334566676667666666666555 7
Q ss_pred EEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHc
Q 021654 93 FATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLK 136 (309)
Q Consensus 93 raa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~ 136 (309)
.+.++.++.++..-...++-++..+..=....+.-.+|++...+
T Consensus 136 ~~~vv~~~~~~~~l~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~ 179 (281)
T PF02401_consen 136 KAIVVESPEDVEKLPISDPKKVAVVSQTTQSVEKFEEIVEALKK 179 (281)
T ss_dssp -EEEESSHHHHHHGGGSSTTCEEEEE-TTS-HHHHHHHHHHHHH
T ss_pred ceEEeCChhhhcccCCCCCCeEEEEEeecccHHHHHHHHHHHHH
Confidence 88899999999888777778999999999999888888776643
No 261
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=33.45 E-value=1.1e+02 Score=28.15 Aligned_cols=38 Identities=24% Similarity=0.365 Sum_probs=27.9
Q ss_pred CeEEEecCCcEEEECCCCeEEEEEcCC--ceEEEEEcCcc
Q 021654 252 GERFDLTVGDYLFTPAGDVHRVKYYEE--TEFFIKWDGRW 289 (309)
Q Consensus 252 ~~~~~L~pGD~v~IP~g~~H~~~n~gd--~~~~i~~~~~~ 289 (309)
...+.+++|+.+.+|....|++.-... .-..+.|...+
T Consensus 140 ~~~Vkp~aG~~vlfps~~lH~v~pVt~G~R~~~~~Wi~S~ 179 (226)
T PRK05467 140 EHRVKLPAGDLVLYPSTSLHRVTPVTRGVRVASFFWIQSL 179 (226)
T ss_pred cEEEecCCCeEEEECCCCceeeeeccCccEEEEEecHHHH
Confidence 367888999999999999999977443 33445565443
No 262
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=33.44 E-value=35 Score=28.56 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=21.3
Q ss_pred eCcccHHHH------HHHHHHHHhCCCcEEEecCCCCc
Q 021654 19 ADSFGAELK------DALVSHLRSLNIDVEDLGTSDYY 50 (309)
Q Consensus 19 ~D~~g~~lk------~~l~~~l~~~g~ev~d~G~~~y~ 50 (309)
.|++|++.. +.|+..+++.|+.|.||..+.|.
T Consensus 64 ydytG~~~~~r~~~y~kI~~~~~~~gf~v~D~s~~~y~ 101 (130)
T PF04914_consen 64 YDYTGLSKEMRQEYYKKIKYQLKSQGFNVADFSDDEYE 101 (130)
T ss_dssp HHHTT--HHHHHHHHHHHHHHHHTTT--EEE-TTGTTS
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHCCCEEEecccCCCC
Confidence 578887743 58999999999999999886543
No 263
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=33.43 E-value=98 Score=35.38 Aligned_cols=35 Identities=26% Similarity=0.189 Sum_probs=26.0
Q ss_pred cEEEEEeCcccH-H-HHHHHHHHHHhCCCcEEEecCC
Q 021654 13 LKIIAGADSFGA-E-LKDALVSHLRSLNIDVEDLGTS 47 (309)
Q Consensus 13 mki~i~~D~~g~-~-lk~~l~~~l~~~g~ev~d~G~~ 47 (309)
-||++++=..-. + =|+.+.-.|+..||+|+|+|..
T Consensus 752 gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~ 788 (1229)
T PRK09490 752 GKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVM 788 (1229)
T ss_pred CeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCC
Confidence 479988633222 2 2577888899999999999985
No 264
>PRK07564 phosphoglucomutase; Validated
Probab=33.02 E-value=1.3e+02 Score=30.96 Aligned_cols=43 Identities=12% Similarity=0.219 Sum_probs=34.4
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEe---cCCCCcchhHHH
Q 021654 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDL---GTSDYYSIGAEV 56 (309)
Q Consensus 14 ki~i~~D~--~g~~lk~~l~~~l~~~g~ev~d~---G~~~y~~~a~~v 56 (309)
+|+||.|. ++-.+++.+..-|.+.|.+|+++ |.-.-|-+...+
T Consensus 78 ~VvVG~D~R~~S~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~~av 125 (543)
T PRK07564 78 PLFVGGDTHALSEPAIQSALEVLAANGVGVVIVGRGGYTPTPAVSHAI 125 (543)
T ss_pred eEEEEecCCcCCHHHHHHHHHHHHHCCCEEEEeCCCCcCCchHHHHHH
Confidence 59999996 68889999999999999999966 655555444444
No 265
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=32.72 E-value=1.7e+02 Score=27.26 Aligned_cols=80 Identities=10% Similarity=0.056 Sum_probs=49.8
Q ss_pred hhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCCCce--EEEEeCCHHHHHHhHhhcCceEeEecccc-------C
Q 021654 52 IGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKNPGV--FATTCLTPADALNTRSINNCNVLAVSGMS-------T 122 (309)
Q Consensus 52 ~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~~gi--raa~~~~~~~A~~~r~hN~aNvl~lg~~~-------~ 122 (309)
+|.++++.|.. | --|++ ++|-=+...|.-++.. .-.++++...|.....+++.||+++||.+ +
T Consensus 96 IA~~Aa~~I~d----g---d~Ifl-d~GtT~~~la~~L~~~~~ltVvTnsl~ia~~l~~~~~~~v~llGG~~~~~~~~~~ 167 (269)
T PRK09802 96 VAKAAVELIQP----G---HRVIL-DSGTTTFEIARLMRKHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFY 167 (269)
T ss_pred HHHHHHhhCCC----C---CEEEE-CCchHHHHHHHhcCcCCCeEEEeCCHHHHHHHHhCCCCEEEEECCEEecCCCceE
Confidence 66666666654 2 23433 4454555566666543 46677888888888888999999999984 4
Q ss_pred CHHHHHHHHHHH-HcCCCC
Q 021654 123 SKESAVEILDTW-LKTPFK 140 (309)
Q Consensus 123 ~~~~a~~i~~~~-l~~~f~ 140 (309)
|+. +.+.++.| ++.-|=
T Consensus 168 G~~-a~~~l~~~~~d~afi 185 (269)
T PRK09802 168 GDQ-AEQSLQNYHFDMLFL 185 (269)
T ss_pred CHH-HHHHHHhccCCEEEE
Confidence 544 44555554 343443
No 266
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=32.53 E-value=55 Score=34.02 Aligned_cols=97 Identities=21% Similarity=0.243 Sum_probs=56.7
Q ss_pred HHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhh----hhhcC-----CCceEEEEe
Q 021654 29 ALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVA----IFANK-----NPGVFATTC 97 (309)
Q Consensus 29 ~l~~~l~~~g~ev~d~G~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~----iaaNK-----~~giraa~~ 97 (309)
.|...|++.|+++..+|. +|+..+...+.+++. ++|.-|+..||+.|-- =+..+ |.||.
T Consensus 210 ~L~a~l~~~G~~v~~~~iv~Dd~e~i~~~l~~al~------~~DlVIttGGtS~G~~D~~~~al~~lG~v~f~GV~---- 279 (546)
T PRK14497 210 YLYSKLKSEGYKIVGLSLLSDDKESIKNEIKRAIS------VADVLILTGGTSAGEKDFVHQAIRELGNIIVHGLK---- 279 (546)
T ss_pred HHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhh------cCCEEEEcCCccCCCCccHHHHHhhcCcEEEccee----
Confidence 567778999999999985 566666666666543 4788888888888731 11111 22332
Q ss_pred CCHHHHHHhHhhcCceEeEeccccCCHHHHH-HHHHHHH
Q 021654 98 LTPADALNTRSINNCNVLAVSGMSTSKESAV-EILDTWL 135 (309)
Q Consensus 98 ~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~-~i~~~~l 135 (309)
--|=.-.++...++.=|++|++--++.-... .++.-+|
T Consensus 280 ikPGKP~~~g~~~gkpV~gLPG~P~Sa~v~f~~fV~P~L 318 (546)
T PRK14497 280 IKPGKPTILGIVDGKPVIGLPGNIVSTMVVLNMVILEYL 318 (546)
T ss_pred ecCCCcEEEEEECCEEEEEcCCCHHHHHHHHHHHHHHHH
Confidence 1111111122236778999998866553332 3444444
No 267
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=32.32 E-value=1.6e+02 Score=27.33 Aligned_cols=62 Identities=11% Similarity=0.155 Sum_probs=40.6
Q ss_pred EEEE--EeCcccHHHHHHHHHHHHhCCCcEEEecCCC--CcchhHHHHHHhhcCCCCCCCceEEEEecCchh
Q 021654 14 KIIA--GADSFGAELKDALVSHLRSLNIDVEDLGTSD--YYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVG 81 (309)
Q Consensus 14 ki~i--~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~~--y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G 81 (309)
||++ .+|..|..+.+.+.+.|++.|.+|++.-... -.|+...+.+.... . ...|++|+++-.
T Consensus 143 ~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~-----~-~d~i~~~~~~~~ 208 (345)
T cd06338 143 KVAILYADDPFSQDVAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKAA-----G-PDAVVVAGHFPD 208 (345)
T ss_pred eEEEEecCCcccHHHHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHHhc-----C-CCEEEECCcchh
Confidence 4444 3444677899999999999999998744322 24665555554333 2 357888887643
No 268
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=32.25 E-value=72 Score=27.15 Aligned_cols=41 Identities=10% Similarity=0.084 Sum_probs=26.3
Q ss_pred HHHHHhH--hhcCceEeEeccc--cCCHHHHHHHHHHHHcCCCCC
Q 021654 101 ADALNTR--SINNCNVLAVSGM--STSKESAVEILDTWLKTPFKA 141 (309)
Q Consensus 101 ~~A~~~r--~hN~aNvl~lg~~--~~~~~~a~~i~~~~l~~~f~~ 141 (309)
.+-++.. .|+|-.++--... .++.+..+++.+.+-.+++.+
T Consensus 57 ~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~~~~ 101 (162)
T PF13177_consen 57 RSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSLSPSEG 101 (162)
T ss_dssp HHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS-TTS
T ss_pred HHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHHHHhcC
Confidence 3334444 4555555544444 789999999999988888864
No 269
>PRK13372 pcmA protocatechuate 4,5-dioxygenase; Provisional
Probab=32.24 E-value=54 Score=33.12 Aligned_cols=18 Identities=17% Similarity=0.265 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhCCCcEE
Q 021654 25 ELKDALVSHLRSLNIDVE 42 (309)
Q Consensus 25 ~lk~~l~~~l~~~g~ev~ 42 (309)
+|-+.|.+.|.+.|+++.
T Consensus 246 eLA~~I~~~L~~~GfD~a 263 (444)
T PRK13372 246 ELAAHIAQSVIQDDFDLT 263 (444)
T ss_pred HHHHHHHHHHHhcCCChh
Confidence 366888899988888763
No 270
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=32.09 E-value=1.7e+02 Score=24.78 Aligned_cols=62 Identities=16% Similarity=0.282 Sum_probs=39.9
Q ss_pred EEEEEeCcccHHHHHHHHHHHH-hCCCcEEEecCC-------CCcchhHHHHHHhhcCCCCCCCceEEEEecCc
Q 021654 14 KIIAGADSFGAELKDALVSHLR-SLNIDVEDLGTS-------DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTG 79 (309)
Q Consensus 14 ki~i~~D~~g~~lk~~l~~~l~-~~g~ev~d~G~~-------~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG 79 (309)
||++--|.....+...+.++|. ..+++|++.|.. ++.+....+-..|.. .+.|..|+.+||-
T Consensus 1 ril~iGDS~~~g~~~~l~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~l~~----~~pd~vii~~G~N 70 (200)
T cd01829 1 RVLVIGDSLAQGLAPGLLRALADNPGIRVINRSKGSSGLVRPDFFDWPEKLKELIAE----EKPDVVVVFLGAN 70 (200)
T ss_pred CEEEEechHHHHHHHHHHHHhccCCCcEEEECccccccccCCCcCCHHHHHHHHHhc----CCCCEEEEEecCC
Confidence 3555566666666666666665 457999998753 244555667677766 6677777766664
No 271
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=32.01 E-value=2.4e+02 Score=21.88 Aligned_cols=32 Identities=19% Similarity=0.093 Sum_probs=23.9
Q ss_pred HHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhc
Q 021654 28 DALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSS 62 (309)
Q Consensus 28 ~~l~~~l~~~g~ev~d~G~~~y~~~a~~va~~v~~ 62 (309)
..|..+|++.||+|..++....+ ..+.+.+.+
T Consensus 18 ~~la~~l~~~G~~v~~~d~~~~~---~~l~~~~~~ 49 (121)
T PF02310_consen 18 LYLAAYLRKAGHEVDILDANVPP---EELVEALRA 49 (121)
T ss_dssp HHHHHHHHHTTBEEEEEESSB-H---HHHHHHHHH
T ss_pred HHHHHHHHHCCCeEEEECCCCCH---HHHHHHHhc
Confidence 57889999999999999875433 556666665
No 272
>cd03085 PGM1 Phosphoglucomutase 1 (PGM1) catalyzes the bidirectional interconversion of glucose-1-phosphate (G-1-P) and glucose-6-phosphate (G-6-P) via a glucose 1,6-diphosphate intermediate, an important metabolic step in prokaryotes and eukaryotes. In one direction, G-1-P produced from sucrose catabolism is converted to G-6-P, the first intermediate in glycolysis. In the other direction, conversion of G-6-P to G-1-P generates a substrate for synthesis of UDP-glucose which is required for synthesis of a variety of cellular constituents including cell wall polymers and glycoproteins. The PGM1 family also includes a non-enzymatic PGM-related protein (PGM-RP) thought to play a structural role in eukaryotes, as well as pp63/parafusin, a phosphoglycoprotein that plays an important role in calcium-regulated exocytosis in ciliated protozoans. PGM1 belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl t
Probab=31.20 E-value=1.5e+02 Score=30.60 Aligned_cols=43 Identities=12% Similarity=0.214 Sum_probs=34.7
Q ss_pred EEEEEeC--cccHHHHHHHHHHHHhCCCcEEEe---cCCCCcchhHHH
Q 021654 14 KIIAGAD--SFGAELKDALVSHLRSLNIDVEDL---GTSDYYSIGAEV 56 (309)
Q Consensus 14 ki~i~~D--~~g~~lk~~l~~~l~~~g~ev~d~---G~~~y~~~a~~v 56 (309)
+|+||-| +.+-.+.+.+.+-|.+.|.+|+++ |.-.-|-++..+
T Consensus 51 ~VvVG~D~R~~S~~~a~~~a~~L~~~G~~V~~~~~~G~~pTP~l~fav 98 (548)
T cd03085 51 TLVVGGDGRYYNKEAIQIIIKIAAANGVGKVVVGQNGLLSTPAVSAVI 98 (548)
T ss_pred eEEEEECCCcChHHHHHHHHHHHHHCCCeEEEeCCCCccCchHHHHHH
Confidence 6999999 467779999999999999999999 555555554444
No 273
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=31.17 E-value=88 Score=32.66 Aligned_cols=106 Identities=14% Similarity=0.108 Sum_probs=63.9
Q ss_pred EEEEeCcccHH-----HHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCC------CCC---------------
Q 021654 15 IIAGADSFGAE-----LKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDS------SDT--------------- 68 (309)
Q Consensus 15 i~i~~D~~g~~-----lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~va~~v~~~~~------~~~--------------- 68 (309)
++|.+=|.|-- .++.+.-.|.+.|..+.=. -.+|+..|..+++.+.-..+ +|.
T Consensus 183 LV~iNP~gGkGka~~~F~~~v~Pll~~A~i~~evv-~T~~~~HArei~rt~dl~kyDgIv~vsGDGl~hEVlNGLl~R~D 261 (579)
T KOG1116|consen 183 LVFINPFGGKGKAKKLFKNHVEPLLSEAGISFEVV-LTTRPNHAREIVRTLDLGKYDGIVCVSGDGLLHEVLNGLLERPD 261 (579)
T ss_pred EEEECCCCCCccHHHHHHhhhhhhhhhcCceEEEE-EecCccHHHHHHHhhhccccceEEEecCCcCHHHhhhccccccc
Confidence 67777777754 4455555666666433321 34689999988887743110 111
Q ss_pred ------CceEEEEecCchhhhhhhcCCCc-eEEEEe-----------CCHHHHHHhHhhcCceEeEecccc
Q 021654 69 ------TTRGLVACGTGVGVAIFANKNPG-VFATTC-----------LTPADALNTRSINNCNVLAVSGMS 121 (309)
Q Consensus 69 ------~~~gi~~CgtG~G~~iaaNK~~g-iraa~~-----------~~~~~A~~~r~hN~aNvl~lg~~~ 121 (309)
--.||+=||||.||+..+|-.-| -....| -|.....++..+.-.-+|+.+-.+
T Consensus 262 ~~~~~klPigiiP~GSGNala~Sv~~~~~~~~~~~a~l~iirg~~t~~dv~~v~~~~~~~~fSfLs~~wGl 332 (579)
T KOG1116|consen 262 WEAAVKLPIGIIPCGSGNALAKSVLWTNGPDLPLLATLLIIRGRLTPMDVSVVEYAGKDRHFSFLSAAWGL 332 (579)
T ss_pred hhhHhcCceeEeecCCccHHHHHhhcccCcccchHHHHHHHccCCCchheeehhhccCcceEEEEeeeeee
Confidence 12499999999999999999887 312222 233444455555555566655543
No 274
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=30.75 E-value=80 Score=28.27 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=28.2
Q ss_pred CcEEEEE-eCcccHHHHHHHHHHHHhCCCcEEEe
Q 021654 12 PLKIIAG-ADSFGAELKDALVSHLRSLNIDVEDL 44 (309)
Q Consensus 12 ~mki~i~-~D~~g~~lk~~l~~~l~~~g~ev~d~ 44 (309)
+|||+|| |--+|..+--.|.+.|++.|+|+.=+
T Consensus 2 ~~riivgisGASG~iygvrlLe~L~~~~~e~hlv 35 (191)
T COG0163 2 MKRIIVGISGASGAIYGVRLLEVLRELGVETHLV 35 (191)
T ss_pred CcEEEEEEeccccHHHHHHHHHHHHhcCceEEEE
Confidence 5788887 88889999999999999999887644
No 275
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=30.54 E-value=2.2e+02 Score=20.80 Aligned_cols=48 Identities=27% Similarity=0.237 Sum_probs=28.8
Q ss_pred EEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCC----eEEEecCCcEEEE
Q 021654 218 VRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKG----ERFDLTVGDYLFT 265 (309)
Q Consensus 218 ~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~----~~~~L~pGD~v~I 265 (309)
..+.+|...-..-.+....+++++|.+.+.....+ ....+.+|+.+-.
T Consensus 20 ~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 71 (115)
T cd00038 20 RRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGE 71 (115)
T ss_pred eeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcCh
Confidence 34555554422223345678999999998544322 2456778887654
No 276
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=30.42 E-value=70 Score=25.45 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=23.0
Q ss_pred cEEEEEeCcccHH---HHHHHHHHHHhCCCcEE
Q 021654 13 LKIIAGADSFGAE---LKDALVSHLRSLNIDVE 42 (309)
Q Consensus 13 mki~i~~D~~g~~---lk~~l~~~l~~~g~ev~ 42 (309)
+||.+.| -+|.. +-++++++++++|.++.
T Consensus 1 ~~Ill~C-~~GaSSs~la~km~~~a~~~gi~~~ 32 (99)
T cd05565 1 LNVLVLC-AGGGTSGLLANALNKGAKERGVPLE 32 (99)
T ss_pred CEEEEEC-CCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 3688888 55654 88999999999998764
No 277
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=30.41 E-value=1.7e+02 Score=29.19 Aligned_cols=32 Identities=16% Similarity=0.136 Sum_probs=24.7
Q ss_pred CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEe
Q 021654 11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDL 44 (309)
Q Consensus 11 ~~mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~ 44 (309)
+++||++-+-|.. -...+...|++.|.+|+-+
T Consensus 174 ~~lkVvvD~~nGa--~~~~~~~ll~~lG~~v~~i 205 (446)
T PRK14324 174 KGLRIVLDTANGA--AYKVAPTVFSELGADVIVI 205 (446)
T ss_pred CCCEEEEECCCch--HHHHHHHHHHHcCCeEEEE
Confidence 5789999998854 3567777788889988755
No 278
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism]
Probab=30.24 E-value=2.2e+02 Score=28.61 Aligned_cols=104 Identities=15% Similarity=0.136 Sum_probs=61.2
Q ss_pred CCCCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-C--C------c--chhHHHHHHhhcCC------CCCCCce
Q 021654 9 APHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-D--Y------Y--SIGAEVGRRVSSSD------SSDTTTR 71 (309)
Q Consensus 9 ~~~~mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~-~--y------~--~~a~~va~~v~~~~------~~~~~~~ 71 (309)
..++|||++-+-|+. =...+.+.|++.|.+|+.+... | + | .-...+++.|.+.. -+|.+||
T Consensus 175 ~~~~lkVv~d~~nGa--a~~~~~~ll~~lG~~vv~~~~~pDg~fp~~~p~p~~~~~~~l~~~v~~~~aDlgia~DgDaDR 252 (464)
T COG1109 175 KLRGLKVVVDCANGA--AGLVAPRLLKELGAEVVSINCDPDGLFPNINPNPGETELLDLAKAVKEHGADLGIAFDGDADR 252 (464)
T ss_pred ccCCcEEEEECCCCc--hhHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCccHHHHHHHHHhcCCCEEEEecCCCce
Confidence 344589999999965 3356677778899999988753 1 2 1 13336666666521 1677888
Q ss_pred EEEEecCch-------hh----hhhhc-CCCceEEEEeCCHHHHHHhHhhcCceEe
Q 021654 72 GLVACGTGV-------GV----AIFAN-KNPGVFATTCLTPADALNTRSINNCNVL 115 (309)
Q Consensus 72 gi~~CgtG~-------G~----~iaaN-K~~giraa~~~~~~~A~~~r~hN~aNvl 115 (309)
-+++...|. ++ .+... +.+.|...+..+......++.+ ++.++
T Consensus 253 ~~~vd~~G~~~~Gd~i~~lla~~l~~~~~~~~vV~tv~ss~~~~~i~~~~-g~~~~ 307 (464)
T COG1109 253 LIVVDERGNFVDGDQILALLAKYLLEKGKLPTVVTTVMSSLALEKIAKKL-GGKVV 307 (464)
T ss_pred EEEEcCCCCEeCccHHHHHHHHHHHhcCCCCeEEEecccchhHHHHHHHc-CCeEE
Confidence 787887762 22 22222 2224666666664555555543 44444
No 279
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=30.22 E-value=1.7e+02 Score=21.42 Aligned_cols=48 Identities=25% Similarity=0.295 Sum_probs=29.3
Q ss_pred EEEcCCCcCCCeecCCceEEEEEecEEEEEEee-CC---eEEEecCCcEEEE
Q 021654 218 VRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLT-KG---ERFDLTVGDYLFT 265 (309)
Q Consensus 218 ~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~-~~---~~~~L~pGD~v~I 265 (309)
..+++|...-..--+.....++++|.+.+.... ++ ....+.+||.+=.
T Consensus 20 ~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 71 (120)
T smart00100 20 VRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGE 71 (120)
T ss_pred EEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceech
Confidence 456666655333334455689999999985431 22 2366678886644
No 280
>PRK14323 glmM phosphoglucosamine mutase; Provisional
Probab=30.04 E-value=2.2e+02 Score=28.28 Aligned_cols=63 Identities=17% Similarity=0.077 Sum_probs=39.2
Q ss_pred CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-C--C------cchhHHHHHHhhcCCCCCCCceEEEEecCc
Q 021654 11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-D--Y------YSIGAEVGRRVSSSDSSDTTTRGLVACGTG 79 (309)
Q Consensus 11 ~~mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~-~--y------~~~a~~va~~v~~~~~~~~~~~gi~~CgtG 79 (309)
..+||++-+-|..- ...+.+.|++.|.+|+-+-.+ | + ++.=..+.+.|.+ ..+|+||.+.|-|
T Consensus 172 ~~~kVvvD~~~G~~--~~~~~~ll~~lG~~v~~l~~~~dg~~~~~~~~~~~l~~l~~~v~~----~~adlGia~DgD~ 243 (440)
T PRK14323 172 SGLKVALDCANGAA--YRLAPKVFQAAGADVFALFNTPDGRNINRGCGSTHPEALQRFVVE----GGLDLGVAFDGDA 243 (440)
T ss_pred cCCEEEEECCCchH--HHHHHHHHHHcCCcEEEEeccCCCCcCCCCCCCCCHHHHHHHHhc----cCCCEEEEeCCCc
Confidence 46899999988543 566777888999999876432 1 1 1233456677765 3444444444433
No 281
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=29.83 E-value=93 Score=29.57 Aligned_cols=36 Identities=8% Similarity=0.301 Sum_probs=25.9
Q ss_pred HhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCCC
Q 021654 107 RSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAP 142 (309)
Q Consensus 107 r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~ 142 (309)
..|+|--++.=-+..++.+..+++++.+-.++++++
T Consensus 69 ~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~ 104 (290)
T PRK07276 69 GEFSDVTVIEPQGQVIKTDTIRELVKNFSQSGYEGK 104 (290)
T ss_pred CCCCCeeeecCCCCcCCHHHHHHHHHHHhhCcccCC
Confidence 345554444323457999999999999999999873
No 282
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=29.73 E-value=2e+02 Score=28.73 Aligned_cols=121 Identities=21% Similarity=0.239 Sum_probs=76.3
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCCC-----------------CcchhHHHHHHhhcCC-----------
Q 021654 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSD-----------------YYSIGAEVGRRVSSSD----------- 64 (309)
Q Consensus 13 mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~~-----------------y~~~a~~va~~v~~~~----------- 64 (309)
.-|+||+=++|..+...|...+ . +++|+-+-..+ +.+++..+-..+....
T Consensus 5 ~iVIlGgGfgGl~~a~~l~~~~-~-~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~~ 82 (405)
T COG1252 5 RIVILGGGFGGLSAAKRLARKL-P-DVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGEVTD 82 (405)
T ss_pred eEEEECCcHHHHHHHHHhhhcC-C-CCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEEEEEE
Confidence 3488999999999988888888 4 77666544322 1223333333322100
Q ss_pred ----------CC-CCCceEEEEecCchhhhhhhcCCCce--EEEEeCCHHHHHHhHhhcC---------------ceEeE
Q 021654 65 ----------SS-DTTTRGLVACGTGVGVAIFANKNPGV--FATTCLTPADALNTRSINN---------------CNVLA 116 (309)
Q Consensus 65 ----------~~-~~~~~gi~~CgtG~G~~iaaNK~~gi--raa~~~~~~~A~~~r~hN~---------------aNvl~ 116 (309)
.+ ++.++=-|++++|-.-.... +||+ .|--..+..+|...|+|-. .+|..
T Consensus 83 ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~fg--i~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~I 160 (405)
T COG1252 83 IDRDAKKVTLADLGEISYDYLVVALGSETNYFG--IPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVI 160 (405)
T ss_pred EcccCCEEEeCCCccccccEEEEecCCcCCcCC--CCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEE
Confidence 12 34556678888876555443 3443 4556688889966555432 37999
Q ss_pred eccccCCHHHHHHHHH---HHHcC
Q 021654 117 VSGMSTSKESAVEILD---TWLKT 137 (309)
Q Consensus 117 lg~~~~~~~~a~~i~~---~~l~~ 137 (309)
.|+..+|.|+|-++.+ .++..
T Consensus 161 vGgG~TGVElAgeL~~~~~~l~~~ 184 (405)
T COG1252 161 VGGGPTGVELAGELAERLHRLLKK 184 (405)
T ss_pred ECCChhHHHHHHHHHHHHHHHhhh
Confidence 9999999999977654 44444
No 283
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=29.40 E-value=1.8e+02 Score=27.09 Aligned_cols=61 Identities=15% Similarity=0.123 Sum_probs=39.7
Q ss_pred EEEEE--eCcccHHHHHHHHHHHHhCCCcEEEecCCC----CcchhHHHHHHhhcCCCCCCCceEEEEecCch
Q 021654 14 KIIAG--ADSFGAELKDALVSHLRSLNIDVEDLGTSD----YYSIGAEVGRRVSSSDSSDTTTRGLVACGTGV 80 (309)
Q Consensus 14 ki~i~--~D~~g~~lk~~l~~~l~~~g~ev~d~G~~~----y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~ 80 (309)
||++. .|..|..+.+.+.+.|++.|.+|+..-..+ -.|+...+.+...+ ..+.|++|+.+.
T Consensus 137 ~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~------~~dvvi~~~~~~ 203 (350)
T cd06366 137 RVATIYEDDDYGSGGLPDLVDALQEAGIEISYRAAFPPSANDDDITDALKKLKEK------DSRVIVVHFSPD 203 (350)
T ss_pred EEEEEEEcCcccchhHHHHHHHHHHcCCEEEEEeccCCCCChhHHHHHHHHHhcC------CCeEEEEECChH
Confidence 44444 455578899999999999999988654322 13565555544332 256888888764
No 284
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=29.10 E-value=1.1e+02 Score=24.10 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=25.5
Q ss_pred EEEEEeCcccHHHHHHHHHHHHhCCCcEEEe
Q 021654 14 KIIAGADSFGAELKDALVSHLRSLNIDVEDL 44 (309)
Q Consensus 14 ki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~ 44 (309)
-|+|++| +.-..++.+..+-+..+..++.+
T Consensus 35 lViiA~D-~~~~~~~~i~~~c~~~~Ip~~~~ 64 (99)
T PRK01018 35 LVIVASN-CPKDIKEDIEYYAKLSGIPVYEY 64 (99)
T ss_pred EEEEeCC-CCHHHHHHHHHHHHHcCCCEEEE
Confidence 3777777 67799999999999999999875
No 285
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=29.09 E-value=2.1e+02 Score=28.38 Aligned_cols=67 Identities=22% Similarity=0.132 Sum_probs=40.0
Q ss_pred CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-CC---------cchhHHHHHHhhcCCC------CCCCceEEE
Q 021654 11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-DY---------YSIGAEVGRRVSSSDS------SDTTTRGLV 74 (309)
Q Consensus 11 ~~mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~-~y---------~~~a~~va~~v~~~~~------~~~~~~gi~ 74 (309)
.++||++-+-|..- ...+.+.|++.|.+|+-+..+ +. +..-..+.+.|.+..+ ++.+||-.+
T Consensus 167 ~~lkIvvd~~~G~~--~~~~~~ll~~lG~~v~~i~~~~d~~~~~~~~~~~~~l~~l~~~v~~~~adlgia~DgDaDR~~v 244 (441)
T cd05805 167 SGLKVVIDYAYGVA--GIVLPGLLSRLGCDVVILNARLDEDAPRTDTERQRSLDRLGRIVKALGADFGVIIDPNGERLIL 244 (441)
T ss_pred cCCeEEEECCCchH--HHHHHHHHHHcCCEEEEEecccCCccCCCCccchhHHHHHHHHHHhCCCCEEEEEcCCCCEEEE
Confidence 47899999888643 367778888899998755332 10 1223445555554111 455556555
Q ss_pred EecCc
Q 021654 75 ACGTG 79 (309)
Q Consensus 75 ~CgtG 79 (309)
++..|
T Consensus 245 vd~~G 249 (441)
T cd05805 245 VDEAG 249 (441)
T ss_pred ECCCC
Confidence 55554
No 286
>PRK05723 flavodoxin; Provisional
Probab=28.82 E-value=1.8e+02 Score=24.57 Aligned_cols=57 Identities=18% Similarity=0.169 Sum_probs=35.7
Q ss_pred cEEEEEeCcccHH-HHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCCceEEEEecC-chh
Q 021654 13 LKIIAGADSFGAE-LKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGT-GVG 81 (309)
Q Consensus 13 mki~i~~D~~g~~-lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~va~~v~~~~~~~~~~~gi~~Cgt-G~G 81 (309)
..|+.||.-.--+ +-+.|.+.|++.|++|.+....+..++ .. -+.+.-|++|.| |.|
T Consensus 3 i~I~ygS~tG~ae~~A~~la~~l~~~g~~~~~~~~~~~~~~--------~~----~~~~~li~~~sT~G~G 61 (151)
T PRK05723 3 VAILSGSVYGTAEEVARHAESLLKAAGFEAWHNPRASLQDL--------QA----FAPEALLAVTSTTGMG 61 (151)
T ss_pred EEEEEEcCchHHHHHHHHHHHHHHHCCCceeecCcCCHhHH--------Hh----CCCCeEEEEECCCCCC
Confidence 3466677765443 778888999999999876432111111 11 123567888887 888
No 287
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=28.53 E-value=1.7e+02 Score=27.71 Aligned_cols=61 Identities=16% Similarity=0.156 Sum_probs=40.0
Q ss_pred cEEEEE-eCcc--cHHHHHHHHHHHHhCCCcEEEecCCC----CcchhHHHHHHhhcCCCCCCCceEEEEecCch
Q 021654 13 LKIIAG-ADSF--GAELKDALVSHLRSLNIDVEDLGTSD----YYSIGAEVGRRVSSSDSSDTTTRGLVACGTGV 80 (309)
Q Consensus 13 mki~i~-~D~~--g~~lk~~l~~~l~~~g~ev~d~G~~~----y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~ 80 (309)
-|++|. .|.. |..+.+.+++.+++.|.+|...-... ..++...+.+. .. .. +.|++|+.+-
T Consensus 138 ~~v~ii~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~d~~~~l~~i-~~-----~~-~vii~~~~~~ 205 (389)
T cd06352 138 HVAVVVYSDDSENCFFTLEALEAALREFNLTVSHVVFMEDNSGAEDLLEILQDI-KR-----RS-RIIIMCGSSE 205 (389)
T ss_pred eEEEEEEecCCccHHHHHHHHHHHHHhcCCeEEEEEEecCCccchhHHHHHHHh-hh-----cc-eEEEEECCHH
Confidence 356664 4554 88899999999999999988654321 24565555443 33 22 6888888753
No 288
>TIGR02706 P_butyryltrans phosphate butyryltransferase. Members of this family are phosphate butyryltransferase, also called phosphotransbutyrylase. In general, this enzyme is found in butyrate-producing anaerobic bacteria, encoded next to the gene for butyrate kinase. Together, these two enzymes represent what may be the less common of two pathways for butyrate production from butyryl-CoA. The alternative is transfer of the CoA group to acetate by butyryl-CoA:acetate CoA transferase. Cutoffs for this model are set such that the homolog from Thermotoga maritima, whose activity on butyryl-CoA is only 30 % of its activity with acetyl-CoA, scores in the zone between trusted and noice cutoffs.
Probab=28.36 E-value=1.2e+02 Score=28.61 Aligned_cols=39 Identities=21% Similarity=0.119 Sum_probs=25.8
Q ss_pred CcchhHHHHHHhhcCCCCCCCceEEEEecC-chhhhh--hhcCCCceE
Q 021654 49 YYSIGAEVGRRVSSSDSSDTTTRGLVACGT-GVGVAI--FANKNPGVF 93 (309)
Q Consensus 49 y~~~a~~va~~v~~~~~~~~~~~gi~~Cgt-G~G~~i--aaNK~~gir 93 (309)
..+.+....+.|.+ |++| +++ ||. ..|-.| +.+|.+||+
T Consensus 72 ~~~s~~~a~~lv~~----G~aD-~~v-sg~~~T~a~l~~~l~~~~Gi~ 113 (294)
T TIGR02706 72 PKKAALLAVRLVST----GKAD-MLM-KGLVDTATFLRSVLNKEVGLR 113 (294)
T ss_pred cHHHHHHHHHHHHC----CCCC-EEE-eCCcCHHHHHHHHhhhccCCC
Confidence 44456666777887 8887 333 554 666555 577888886
No 289
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=28.34 E-value=2.4e+02 Score=28.25 Aligned_cols=63 Identities=13% Similarity=0.054 Sum_probs=38.6
Q ss_pred CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC--------CC-cchhHHHHHHhhcCCCCCCCceEEEEecCc
Q 021654 11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS--------DY-YSIGAEVGRRVSSSDSSDTTTRGLVACGTG 79 (309)
Q Consensus 11 ~~mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~--------~y-~~~a~~va~~v~~~~~~~~~~~gi~~CgtG 79 (309)
.++||++-+-|.. -...+.+.|++.|.+|+-+... .. ++.-..+.+.|.+ ..+|.||.+.|-|
T Consensus 187 ~~~kVvvD~~nG~--~~~~~~~ll~~LG~~v~~l~~~~dg~~~~~~~~~~~l~~l~~~v~~----~~adlGia~DgDg 258 (465)
T PRK14317 187 QGVKIVLDLAWGA--AVACAPEVFKALGAEVICLHDQPDGDRINVNCGSTHLEPLQAAVLE----HGADMGFAFDGDA 258 (465)
T ss_pred CCCEEEEECCCch--HHHHHHHHHHHcCCeEEEEecccCCCCCCCCCchHhHHHHHHHHHh----cCCCEEEEECCCC
Confidence 4689999988853 3466777788889999866432 11 2334456666665 3344444444443
No 290
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=28.26 E-value=1.4e+02 Score=24.01 Aligned_cols=48 Identities=15% Similarity=0.117 Sum_probs=29.9
Q ss_pred EEEEEeCcccH--HHHHHHHHHHHhC-CCcEEEecCC-CCcchhHHHHHHhhc
Q 021654 14 KIIAGADSFGA--ELKDALVSHLRSL-NIDVEDLGTS-DYYSIGAEVGRRVSS 62 (309)
Q Consensus 14 ki~i~~D~~g~--~lk~~l~~~l~~~-g~ev~d~G~~-~y~~~a~~va~~v~~ 62 (309)
+|+|.| |..+ .+++.+...+.+. .+.++|+..+ +..++..++.+.+.+
T Consensus 2 ~ili~s-HG~~A~gi~~~~~~i~G~~~~i~~~~~~~~~~~~~~~~~i~~~i~~ 53 (122)
T cd00006 2 GIIIAT-HGGFASGLLNSAEMILGEQENVEAIDFPPGESPDDLLEKIKAALAE 53 (122)
T ss_pred eEEEEc-CHHHHHHHHHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 454544 4433 3666666666544 5677777765 456777888777765
No 291
>PRK01215 competence damage-inducible protein A; Provisional
Probab=28.13 E-value=90 Score=29.17 Aligned_cols=80 Identities=13% Similarity=0.076 Sum_probs=52.0
Q ss_pred HHHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCCCceEEEEeCCHHHHHH
Q 021654 28 DALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALN 105 (309)
Q Consensus 28 ~~l~~~l~~~g~ev~d~G~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~~giraa~~~~~~~A~~ 105 (309)
..|.+.|++.|++|...++ ++..++...+.+... .+|.-|+-.|+|.| .|-.+.+-
T Consensus 26 ~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~------~~DlVIttGG~g~t----------------~dD~t~ea 83 (264)
T PRK01215 26 SWIARRLTYLGYTVRRITVVMDDIEEIVSAFREAID------RADVVVSTGGLGPT----------------YDDKTNEG 83 (264)
T ss_pred HHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhc------CCCEEEEeCCCcCC----------------hhhhHHHH
Confidence 3677778999999988874 456667666666644 34666666666643 23333333
Q ss_pred hHhhcCceEeEeccccCCHHHHHHHHHHHHc
Q 021654 106 TRSINNCNVLAVSGMSTSKESAVEILDTWLK 136 (309)
Q Consensus 106 ~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~ 136 (309)
.++ ++|-.+...+.+.+.++.|+.
T Consensus 84 ia~-------~~g~~l~~~~e~~~~l~~~~~ 107 (264)
T PRK01215 84 FAK-------ALGVELELNEDALRMILEKYE 107 (264)
T ss_pred HHH-------HhCCCCCCCHHHHHHHHHHHH
Confidence 333 256677888888888888875
No 292
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=28.11 E-value=59 Score=29.38 Aligned_cols=30 Identities=30% Similarity=0.451 Sum_probs=22.2
Q ss_pred chhHHHHHHhhcCCCCCCCceEEEEecCch
Q 021654 51 SIGAEVGRRVSSSDSSDTTTRGLVACGTGV 80 (309)
Q Consensus 51 ~~a~~va~~v~~~~~~~~~~~gi~~CgtG~ 80 (309)
..+..|++.|.+....+...+-+++||+|.
T Consensus 31 nAG~aVa~~i~~~~~~~~~~~v~vlcG~Gn 60 (203)
T COG0062 31 NAGLAVARAILREYPLGRARRVLVLCGPGN 60 (203)
T ss_pred HHHHHHHHHHHHHcCcccCCEEEEEECCCC
Confidence 467888888887433344667999999994
No 293
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=27.82 E-value=74 Score=30.94 Aligned_cols=28 Identities=29% Similarity=0.258 Sum_probs=24.8
Q ss_pred EEEecCCcEEEECCCCeEEEEEcCCceE
Q 021654 254 RFDLTVGDYLFTPAGDVHRVKYYEETEF 281 (309)
Q Consensus 254 ~~~L~pGD~v~IP~g~~H~~~n~gd~~~ 281 (309)
+....||..+|+|.|=.|-+.|..++.+
T Consensus 264 Ec~q~pGEt~fVP~GWWHvVlNle~TIA 291 (407)
T KOG2130|consen 264 ECLQKPGETMFVPSGWWHVVLNLEPTIA 291 (407)
T ss_pred eeeecCCceEEecCCeEEEEeccCceee
Confidence 4678899999999999999999987665
No 294
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=27.53 E-value=3.1e+02 Score=24.17 Aligned_cols=67 Identities=13% Similarity=0.106 Sum_probs=37.8
Q ss_pred EEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeE---EEecCCcEEEE-----CCCCeEEEEEcCCceEEEE
Q 021654 218 VRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGER---FDLTVGDYLFT-----PAGDVHRVKYYEETEFFIK 284 (309)
Q Consensus 218 ~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~---~~L~pGD~v~I-----P~g~~H~~~n~gd~~~~i~ 284 (309)
..+++|...-.--.+...+++|++|.+.+....+++. ..+.+||.+-. .....+.+.+.+++.++..
T Consensus 33 ~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~A~~~~~~~~i 107 (236)
T PRK09392 33 QRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFILAAVVLDAPYLMSARTLTRSRVLMI 107 (236)
T ss_pred eecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhhHHHhCCCCCceEEEEcCceEEEEE
Confidence 3455555543222344567899999999854333333 56678886422 1223445666666666543
No 295
>PLN02895 phosphoacetylglucosamine mutase
Probab=27.47 E-value=1.4e+02 Score=31.15 Aligned_cols=37 Identities=24% Similarity=0.452 Sum_probs=32.4
Q ss_pred CCcEEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCC
Q 021654 11 HPLKIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTS 47 (309)
Q Consensus 11 ~~mki~i~~D~--~g~~lk~~l~~~l~~~g~ev~d~G~~ 47 (309)
.+.+|+||-|- +|-.|.+.+.+-|.+.|.+|+|+|.-
T Consensus 126 ~~~~V~vG~DtR~Ss~~l~~a~~~gl~~~G~~v~d~G~~ 164 (562)
T PLN02895 126 PPAEVLLGRDTRPSGPALLAAALKGVRAIGARAVDMGIL 164 (562)
T ss_pred cCCEEEEEecCCCCHHHHHHHHHHHHHHCCCCEEEeCcC
Confidence 45689999995 57779999999999999999999963
No 296
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=27.41 E-value=5.7e+02 Score=24.66 Aligned_cols=118 Identities=14% Similarity=0.039 Sum_probs=64.4
Q ss_pred CcccccCCCCCCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCCC--CcchhH---HHHHHhhcCCCCCCCceEEEE
Q 021654 1 MAENAAAAAPHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSD--YYSIGA---EVGRRVSSSDSSDTTTRGLVA 75 (309)
Q Consensus 1 ~~~~~~~~~~~~mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~~--y~~~a~---~va~~v~~~~~~~~~~~gi~~ 75 (309)
||.. +..+....||+|--..- -..+.+.|+++|.+++-+=+-. ..+-.. ...+.+.. + ++..++
T Consensus 1 ~~~~-~~~pL~g~rIlvtr~~~----a~~la~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~~~~l~~----~--~~d~vv 69 (381)
T PRK07239 1 MAQA-DSAPLAGFTVGVTAARR----AEELAALLERRGARVVHAPALRIVPLADDDELRAATRALIA----A--PPDIVV 69 (381)
T ss_pred CCCC-CCCCCCCcEEEEeccCC----HHHHHHHHHHcCCeEEEecCEEEecCCCcHHHHHHHHHHHc----C--CCCEEE
Confidence 4443 33334456899987542 3677788889999999875432 111111 22223332 2 456788
Q ss_pred ecCchhhhhhhc-------------CCCceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHH
Q 021654 76 CGTGVGVAIFAN-------------KNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEIL 131 (309)
Q Consensus 76 CgtG~G~~iaaN-------------K~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~ 131 (309)
..|+.|+..... +..+++.+.+-. .+|+..+++. -.+-.++.+..+..++..+.
T Consensus 70 fTS~ngv~~~~~~l~~~~~~~~~~~~l~~~~i~aVG~-~Ta~aL~~~G-~~~~~~p~~~~~e~L~~~l~ 136 (381)
T PRK07239 70 ATTGIGFRGWVEAADGWGLADELLEALSSARLLARGP-KATGAIRAAG-LREEWSPASESSAEVLEYLL 136 (381)
T ss_pred EeChHHHHHHHHHHHHcCChHHHHHHHcCCeEEEECc-cHHHHHHHcC-CCCccCCCCCccHHHHHHHh
Confidence 888988876542 234555544432 4444445443 23334555666665555544
No 297
>COG1741 Pirin-related protein [General function prediction only]
Probab=27.33 E-value=5.4e+02 Score=24.34 Aligned_cols=31 Identities=23% Similarity=0.185 Sum_probs=21.8
Q ss_pred EEEEEcCCCcCCCeecCCceEEEEEecEEEE
Q 021654 216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSV 246 (309)
Q Consensus 216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v 246 (309)
..+.+.+|...+.+.-...-.+||++|.+++
T Consensus 176 ~dl~l~~g~~~~l~~~~~~~~l~v~~G~l~v 206 (276)
T COG1741 176 VDLRLEAGARLQLPPAGRRAYLYVIEGTLEV 206 (276)
T ss_pred EEEEeCCCceEecCCCCceEEEEEEEeEEEE
Confidence 4567788888777611223449999999988
No 298
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=27.32 E-value=71 Score=30.76 Aligned_cols=38 Identities=26% Similarity=0.425 Sum_probs=30.1
Q ss_pred ceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhh
Q 021654 112 CNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEE 153 (309)
Q Consensus 112 aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~ 153 (309)
-||||+|.--+|... ++|+.|+|.|+. .|.+-..|-.+
T Consensus 43 FNilCvGETg~GKsT---LmdtLFNt~f~~-~p~~H~~~~V~ 80 (406)
T KOG3859|consen 43 FNILCVGETGLGKST---LMDTLFNTKFES-EPSTHTLPNVK 80 (406)
T ss_pred EEEEEeccCCccHHH---HHHHHhccccCC-CCCccCCCCce
Confidence 599999999888765 578999999985 66666666555
No 299
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=27.15 E-value=1.7e+02 Score=27.87 Aligned_cols=87 Identities=17% Similarity=0.185 Sum_probs=49.0
Q ss_pred CcEEEEEeCcc-cHH---HHHHHHHHHHhCCCcEEEecCC---CCcchhHHHHHHhhcCCC-------CCCC-ceEEEEe
Q 021654 12 PLKIIAGADSF-GAE---LKDALVSHLRSLNIDVEDLGTS---DYYSIGAEVGRRVSSSDS-------SDTT-TRGLVAC 76 (309)
Q Consensus 12 ~mki~i~~D~~-g~~---lk~~l~~~l~~~g~ev~d~G~~---~y~~~a~~va~~v~~~~~-------~~~~-~~gi~~C 76 (309)
.-.|++|.|+. |.. =-+.|+++.++.|++|+=+-.. +-.-.+-.+=+.|.++.- .... -.|.++.
T Consensus 115 ~~~iVvG~Df~FG~~~~G~~~~L~~~~~~~g~~v~~v~~~~~~~~~ISST~IR~~I~~G~i~~A~~lLg~~y~~~g~V~~ 194 (305)
T PRK05627 115 AKHVVVGFDFRFGKKRAGDFELLKEAGKEFGFEVTIVPEVKEDGERVSSTAIRQALAEGDLELANKLLGRPYSISGRVVH 194 (305)
T ss_pred CCEEEECCCCCCCCCCCCCHHHHHHHHHHcCcEEEEeccEecCCCcCchHHHHHHHHcCCHHHHHhhhcCCCceEEEEEE
Confidence 34699999994 322 1266778888889887643221 111122223333333000 0122 3599999
Q ss_pred cCchhhhhh---hc------CC--CceEEEEeC
Q 021654 77 GTGVGVAIF---AN------KN--PGVFATTCL 98 (309)
Q Consensus 77 gtG~G~~ia---aN------K~--~giraa~~~ 98 (309)
|-|.|-.|- || ++ .||+++.+.
T Consensus 195 G~~~Gr~lgfPTaNl~~~~~~~p~~GVY~~~~~ 227 (305)
T PRK05627 195 GQKLGRTLGFPTANLPLPDRVLPADGVYAVRVK 227 (305)
T ss_pred CcccCccccceeEeecCccCCCCCceEEEEEEE
Confidence 999984442 33 32 499999884
No 300
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=26.94 E-value=2.6e+02 Score=27.74 Aligned_cols=71 Identities=11% Similarity=0.022 Sum_probs=45.5
Q ss_pred CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC---C-------CcchhHHHHHHhhcCCCCCCCceEEEEecCch
Q 021654 11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS---D-------YYSIGAEVGRRVSSSDSSDTTTRGLVACGTGV 80 (309)
Q Consensus 11 ~~mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~---~-------y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~ 80 (309)
.++||++-+-|..- ...+.+.|++.|.+|+-+..+ + -|+.-..+.+.|.+ ..+|.||.+.|-|=
T Consensus 172 ~~lkVvvd~~~G~~--~~~~~~ll~~lg~~v~~~~~~~d~~F~~~p~p~~~~l~~l~~~v~~----~~adlgi~~D~DgD 245 (445)
T cd05803 172 RNFKVAVDSVNGAG--GLLIPRLLEKLGCEVIVLNCEPTGLFPHTPEPLPENLTQLCAAVKE----SGADVGFAVDPDAD 245 (445)
T ss_pred CCCEEEEECCCCcH--HHHHHHHHHHcCCEEEEeCCcCCCCCCCCCCCChHHHHHHHHHHHh----cCCCEEEeeCCCCc
Confidence 46899999988643 356778888999998755322 1 12344566677766 55666766666664
Q ss_pred hhhhhhc
Q 021654 81 GVAIFAN 87 (309)
Q Consensus 81 G~~iaaN 87 (309)
-+.++-+
T Consensus 246 R~~ivd~ 252 (445)
T cd05803 246 RLALVDE 252 (445)
T ss_pred eEEEECC
Confidence 4444433
No 301
>PLN02307 phosphoglucomutase
Probab=26.89 E-value=2.4e+02 Score=29.52 Aligned_cols=44 Identities=14% Similarity=0.201 Sum_probs=35.1
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEec---CCCCcchhHHHH
Q 021654 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLG---TSDYYSIGAEVG 57 (309)
Q Consensus 14 ki~i~~D~--~g~~lk~~l~~~l~~~g~ev~d~G---~~~y~~~a~~va 57 (309)
+|+||-|. .+-.+.+.+.+-|.+.|++|++++ .-.-|-++..+-
T Consensus 63 ~VvVG~D~R~~S~~fa~~~a~~L~a~Gi~V~~~~~~G~~PTP~vsfav~ 111 (579)
T PLN02307 63 TLVLGGDGRYFNKEAIQIIIKIAAANGVRRVWVGQNGLLSTPAVSAVIR 111 (579)
T ss_pred eEEEEeCCCcchHHHHHHHHHHHHHCCCEEEEeCCCCccCchHHHHHHH
Confidence 59999994 567799999999999999999994 445565555554
No 302
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=26.84 E-value=2.8e+02 Score=26.50 Aligned_cols=69 Identities=12% Similarity=0.078 Sum_probs=45.6
Q ss_pred CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC---CC---------cchhHHHHHHhhcCCCCCCCceEEEEecC
Q 021654 11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS---DY---------YSIGAEVGRRVSSSDSSDTTTRGLVACGT 78 (309)
Q Consensus 11 ~~mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~---~y---------~~~a~~va~~v~~~~~~~~~~~gi~~Cgt 78 (309)
.++||+|-+-|.. .+..+.+.|++.|.+|+-+... .| +..-..+.+.|.+ ..++.|+.+.|-
T Consensus 111 ~~~kvvvD~~~G~--~~~~~~~ll~~lg~~v~~~n~~~d~~F~~~~p~p~~~~~l~~l~~~v~~----~~adlG~a~DgD 184 (355)
T cd03084 111 KKFKVVVDSVNGV--GGPIAPQLLEKLGAEVIPLNCEPDGNFGNINPDPGSETNLKQLLAVVKA----EKADFGVAFDGD 184 (355)
T ss_pred CCCEEEEECCCch--HHHHHHHHHHHcCCcEEEEcCcCCCCCCCCCCCCCchhhHHHHHHHHHh----cCCCEEEEEcCC
Confidence 4679999988854 4677888888889998876432 11 1233466677766 566777777777
Q ss_pred chhhhhh
Q 021654 79 GVGVAIF 85 (309)
Q Consensus 79 G~G~~ia 85 (309)
|==+.++
T Consensus 185 gDRl~~v 191 (355)
T cd03084 185 ADRLIVV 191 (355)
T ss_pred CceeEEE
Confidence 6433333
No 303
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=26.83 E-value=2.3e+02 Score=26.33 Aligned_cols=65 Identities=9% Similarity=-0.001 Sum_probs=43.1
Q ss_pred cEEEEEeCcc--cHHHHHHHHHHHHhCCCcEEEecCC--CCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhh
Q 021654 13 LKIIAGADSF--GAELKDALVSHLRSLNIDVEDLGTS--DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVA 83 (309)
Q Consensus 13 mki~i~~D~~--g~~lk~~l~~~l~~~g~ev~d~G~~--~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~ 83 (309)
-||++..+.. |..+.+.+++.|++.|.+|+.-... +-.|+...+.+.... + .| .|++++.+-...
T Consensus 133 ~~v~i~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~l~~~----~-pd-~v~~~~~~~~~~ 201 (333)
T cd06358 133 RRWYLIGNDYVWPRGSLAAAKRYIAELGGEVVGEEYVPLGTTDFTSVLERIAAS----G-AD-AVLSTLVGQDAV 201 (333)
T ss_pred CeEEEEeccchhhHHHHHHHHHHHHHcCCEEeeeeeecCChHHHHHHHHHHHHc----C-CC-EEEEeCCCCchH
Confidence 4677766443 5578899999999999999874432 235676666665544 3 33 677777764433
No 304
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.59 E-value=1.4e+02 Score=22.52 Aligned_cols=34 Identities=29% Similarity=0.378 Sum_probs=26.6
Q ss_pred EEEEEeCccc-HHHHHHHHHHHHhCCCcEEEecCC
Q 021654 14 KIIAGADSFG-AELKDALVSHLRSLNIDVEDLGTS 47 (309)
Q Consensus 14 ki~i~~D~~g-~~lk~~l~~~l~~~g~ev~d~G~~ 47 (309)
++.++-+-.+ .+-.+.+++.|++.||.+++...+
T Consensus 41 ~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~~~~~ 75 (85)
T cd04906 41 HIFVGVSVANGAEELAELLEDLKSAGYEVVDLSDD 75 (85)
T ss_pred EEEEEEEeCCcHHHHHHHHHHHHHCCCCeEECCCC
Confidence 4666656556 777789999999999999987643
No 305
>PRK12354 carbamate kinase; Reviewed
Probab=26.58 E-value=4.4e+02 Score=25.35 Aligned_cols=117 Identities=15% Similarity=0.149 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhCCCcEEEecCC------C-Ccc--h-hHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcC---CCce
Q 021654 26 LKDALVSHLRSLNIDVEDLGTS------D-YYS--I-GAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANK---NPGV 92 (309)
Q Consensus 26 lk~~l~~~l~~~g~ev~d~G~~------~-y~~--~-a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK---~~gi 92 (309)
=|++-++..+++|+.+..-|-. | -|. + ...+-..+.+ ..-++.||.| |+-++-.. ..||
T Consensus 128 ~~~~a~~~~~e~g~~~~~dg~g~rrVv~SP~P~~ive~~~I~~Ll~~-------g~ivIa~GGG-GIPV~~~~~~~~~gv 199 (307)
T PRK12354 128 DEAEAERLAAEKGWTIKPDGDYFRRVVPSPRPKRIVEIRPIRWLLEK-------GHLVICAGGG-GIPVVYDADGKLHGV 199 (307)
T ss_pred CHHHHHHHHHhcCCEEeecCCceEEEecCCCCcceeCHHHHHHHHHC-------CCEEEEeCCC-ccCeEecCCCceeee
Confidence 3567777777889855444632 1 111 2 2333444443 2334444444 88876532 4567
Q ss_pred EEEEeCCHHHHHHhHhhcCceEeEec--------------ccc---CCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhh
Q 021654 93 FATTCLTPADALNTRSINNCNVLAVS--------------GMS---TSKESAVEILDTWLKTPFKAPCPASGFKPWEENI 155 (309)
Q Consensus 93 raa~~~~~~~A~~~r~hN~aNvl~lg--------------~~~---~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I 155 (309)
-|..-.|.-.|.+|.+.+ |..|.+= ++. +..+.+.++ .| +..+..||.+..
T Consensus 200 ~aViD~D~~Aa~LA~~l~-Ad~LiiLTdVdGVy~~~~~p~~k~i~~it~~e~~~~-------~f----~~GgM~pKV~AA 267 (307)
T PRK12354 200 EAVIDKDLAAALLAEQLD-ADLLLILTDVDAVYLDWGKPTQRAIAQATPDELREL-------GF----AAGSMGPKVEAA 267 (307)
T ss_pred eecCCccHHHHHHHHHcC-CCEEEEEeCCcceecCCCCCCCeECCCCCHHHHHhh-------CC----CcCChHHHHHHH
Confidence 766667888888888764 6666551 222 333333332 33 567788888876
Q ss_pred hhhhhhc
Q 021654 156 SCFFDKS 162 (309)
Q Consensus 156 ~~fl~~s 162 (309)
-+|..+.
T Consensus 268 ~~~~~~g 274 (307)
T PRK12354 268 CEFVRAT 274 (307)
T ss_pred HHHHHhC
Confidence 6776655
No 306
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=26.44 E-value=52 Score=30.04 Aligned_cols=27 Identities=22% Similarity=0.190 Sum_probs=23.2
Q ss_pred EeCcccHHHHHHHHHHHHhCCCcEEEec
Q 021654 18 GADSFGAELKDALVSHLRSLNIDVEDLG 45 (309)
Q Consensus 18 ~~D~~g~~lk~~l~~~l~~~g~ev~d~G 45 (309)
.||+-- .|+..|...|+.+||.|+|--
T Consensus 31 TSd~~~-~l~~~i~~~L~~kGY~vv~~P 57 (215)
T PF05818_consen 31 TSDKDI-NLESQIISALQAKGYQVVDDP 57 (215)
T ss_pred CCCCcc-chHHHHHHHHHHCCCEEecCh
Confidence 477765 899999999999999999743
No 307
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=26.38 E-value=2.5e+02 Score=25.48 Aligned_cols=99 Identities=17% Similarity=0.220 Sum_probs=61.9
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCCCce
Q 021654 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKNPGV 92 (309)
Q Consensus 13 mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~~gi 92 (309)
|||.|--|.. .+.+.|..+|+..||+|.=+.. +..+-+.+.+ . .|..||=++-. +|+ |.
T Consensus 1 ~~ILiveDd~--~i~~~l~~~L~~~g~~v~~~~~------~~~a~~~~~~----~-~dlviLD~~lP-~~d-------G~ 59 (229)
T COG0745 1 MRILLVEDDP--ELAELLKEYLEEEGYEVDVAAD------GEEALEAARE----Q-PDLVLLDLMLP-DLD-------GL 59 (229)
T ss_pred CeEEEEcCCH--HHHHHHHHHHHHCCCEEEEECC------HHHHHHHHhc----C-CCEEEEECCCC-CCC-------HH
Confidence 6899999984 7889999999999999985432 2333344444 6 88888888554 111 11
Q ss_pred EEEEeCCHHHHHHhH--hhcCceEeEeccccCCHHHH--HH-HHHHHHcCCCC
Q 021654 93 FATTCLTPADALNTR--SINNCNVLAVSGMSTSKESA--VE-ILDTWLKTPFK 140 (309)
Q Consensus 93 raa~~~~~~~A~~~r--~hN~aNvl~lg~~~~~~~~a--~~-i~~~~l~~~f~ 140 (309)
...+.-| ..++.=||.|.++--..+.. .+ =+|-|+.-||.
T Consensus 60 --------~~~~~iR~~~~~~~PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~ 104 (229)
T COG0745 60 --------ELCRRLRAKKGSGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFS 104 (229)
T ss_pred --------HHHHHHHhhcCCCCcEEEEECCCcHHHHHHHHhCcCCeeeeCCCC
Confidence 2223444 44666789999983222221 11 24667777775
No 308
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=25.85 E-value=84 Score=28.31 Aligned_cols=32 Identities=22% Similarity=0.166 Sum_probs=26.8
Q ss_pred EEEEEeCcccHHHHHHHHHHHHhCCCcEEEecC
Q 021654 14 KIIAGADSFGAELKDALVSHLRSLNIDVEDLGT 46 (309)
Q Consensus 14 ki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~ 46 (309)
||+|-+|+.+.+.+ .|.+.|+++|+++.=+..
T Consensus 1 ~~~~~~~~~~~~~~-~l~~a~~~~g~~~~~~~~ 32 (277)
T TIGR00768 1 KLAILYDRIRLDEK-MLKEAAEELGIDYKVVTP 32 (277)
T ss_pred CEEEEEcCCCHHHH-HHHHHHHHcCCceEEEEh
Confidence 69999999999665 889999999998876554
No 309
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=25.77 E-value=76 Score=29.89 Aligned_cols=34 Identities=12% Similarity=0.219 Sum_probs=26.0
Q ss_pred hhcCc-eEeEeccccCCHHHHHHHHHHHHcCCCCC
Q 021654 108 SINNC-NVLAVSGMSTSKESAVEILDTWLKTPFKA 141 (309)
Q Consensus 108 ~hN~a-Nvl~lg~~~~~~~~a~~i~~~~l~~~f~~ 141 (309)
.|.|- |+....++.++.+..+++++..-.++|.+
T Consensus 58 ~h~D~~~~~~~~~~~i~v~~ir~~~~~~~~~p~~~ 92 (313)
T PRK05564 58 EYVDIIEFKPINKKSIGVDDIRNIIEEVNKKPYEG 92 (313)
T ss_pred CCCCeEEeccccCCCCCHHHHHHHHHHHhcCcccC
Confidence 47776 55554667889999999998877788875
No 310
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=25.69 E-value=4.8e+02 Score=24.13 Aligned_cols=113 Identities=8% Similarity=0.015 Sum_probs=61.0
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCCC--CcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcC--
Q 021654 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSD--YYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANK-- 88 (309)
Q Consensus 13 mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~~--y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK-- 88 (309)
.||.|-.=..| ++.|.+.|++.|+.|..+=.|. ++++...+...+.. . ....+++-.||-...-...-
T Consensus 139 ~~vLi~rg~~g---r~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~l~~----~-~~~d~i~ftS~sav~~f~~~l~ 210 (266)
T PRK08811 139 QAVGLITAPGG---RGLLAPTLQQRGARILRADVYQRVPLRLRASTLAALSR----A-APRSVLALSSAEALTLILQQLP 210 (266)
T ss_pred CEEEEEeCCCc---HHHHHHHHHHCCCEEeEEEEEeeeCCCCCHHHHHHHHH----h-CCCCEEEEChHHHHHHHHHHhh
Confidence 46554333334 4788999999999999887753 33343344444432 1 22445556666554333211
Q ss_pred ------CCceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHc
Q 021654 89 ------NPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLK 136 (309)
Q Consensus 89 ------~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~ 136 (309)
...+. .+|-++.+|..+++..=.||++-.. -..+-..+.+.+|++
T Consensus 211 ~~~~~~l~~~~-~v~is~rtA~~a~~~G~~~v~vA~~--~~~~~l~~a~~~~~~ 261 (266)
T PRK08811 211 DALRRALQQRP-VVASSDRLLDAAHAAGFIHVMRAAG--PLPAQLAAAAAAIMT 261 (266)
T ss_pred hhHHHHHhCCC-EEEeCHHHHHHHHHcCCCceeeCCC--CCHHHHHHHHHhhcC
Confidence 12332 3566667777777665555543332 234444455555655
No 311
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=25.57 E-value=2.2e+02 Score=26.70 Aligned_cols=61 Identities=11% Similarity=0.063 Sum_probs=39.2
Q ss_pred EEEEE--eCcccHHHHHHHHHHHHhCCCcEEEecCC--CCcchhHHHHHHhhcCCCCCCCceEEEEecCch
Q 021654 14 KIIAG--ADSFGAELKDALVSHLRSLNIDVEDLGTS--DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGV 80 (309)
Q Consensus 14 ki~i~--~D~~g~~lk~~l~~~l~~~g~ev~d~G~~--~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~ 80 (309)
||++- .+-.|-.+.+.+++.|++.|.+|+..... +-.|+...+.+.-.+ + -.+|++|+.+.
T Consensus 140 ~v~il~~d~~~g~~~~~~~~~~l~~~G~~vv~~~~~~~~~~D~s~~i~~i~~~----~--~d~v~~~~~~~ 204 (347)
T cd06336 140 KVALLGPNDAYGQPWVAAYKAAWEAAGGKVVSEEPYDPGTTDFSPIVTKLLAE----K--PDVIFLGGPSP 204 (347)
T ss_pred eEEEEccCCchhHHHHHHHHHHHHHcCCEEeeecccCCCCcchHHHHHHHHhc----C--CCEEEEcCCCc
Confidence 44443 33445568889999999999999864432 234565555444333 3 35889999887
No 312
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=25.29 E-value=1.8e+02 Score=28.03 Aligned_cols=85 Identities=8% Similarity=0.074 Sum_probs=52.7
Q ss_pred HHHHHHhhcCCCCCCCceEEEEec-Cchhhh---------hhh-cCCCceEEEEeCCHHHHHHhHhhcCceEeEec--cc
Q 021654 54 AEVGRRVSSSDSSDTTTRGLVACG-TGVGVA---------IFA-NKNPGVFATTCLTPADALNTRSINNCNVLAVS--GM 120 (309)
Q Consensus 54 ~~va~~v~~~~~~~~~~~gi~~Cg-tG~G~~---------iaa-NK~~giraa~~~~~~~A~~~r~hN~aNvl~lg--~~ 120 (309)
..+.+.+.+ |+..-++||+| .|+|-. +.| |+-.+--|+.|.+-.- ..+..|+|-..|.-- ..
T Consensus 12 ~~l~~~~~~----~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~-~~~g~HPD~~~i~p~~~~~ 86 (334)
T PRK07993 12 EQLVGSYQA----GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQL-MQAGTHPDYYTLTPEKGKS 86 (334)
T ss_pred HHHHHHHHc----CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHH-HHcCCCCCEEEEecccccc
Confidence 455566665 66666777776 355543 333 3333345666654332 234566666655432 25
Q ss_pred cCCHHHHHHHHHHHHcCCCCCCC
Q 021654 121 STSKESAVEILDTWLKTPFKAPC 143 (309)
Q Consensus 121 ~~~~~~a~~i~~~~l~~~f~~~~ 143 (309)
.++.+..+++.+.+-.++++|+|
T Consensus 87 ~I~idqiR~l~~~~~~~~~~g~~ 109 (334)
T PRK07993 87 SLGVDAVREVTEKLYEHARLGGA 109 (334)
T ss_pred cCCHHHHHHHHHHHhhccccCCc
Confidence 79999999999999999998743
No 313
>PHA02984 hypothetical protein; Provisional
Probab=25.17 E-value=2.9e+02 Score=26.22 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=33.4
Q ss_pred EEEEEecEEEEEEeeCCe--EEEecCCcEEEECCCCeEEEEEc
Q 021654 236 DLVVLQGKKSVWNLTKGE--RFDLTVGDYLFTPAGDVHRVKYY 276 (309)
Q Consensus 236 ~vyVlsG~l~v~i~~~~~--~~~L~pGD~v~IP~g~~H~~~n~ 276 (309)
++.+|+|+.++....+++ +..+..|+.+.+.-+..|+....
T Consensus 96 FvlCl~G~~~I~~~~~~~~is~~I~kGeaf~md~~t~h~i~T~ 138 (286)
T PHA02984 96 FVLCLNGKTSIECFNKGSKITNTIKKGEAFTLNLKTKYVTTTK 138 (286)
T ss_pred EEEEcCCeEEEEEecCCceeeeEEecCceEEEEccceEEEEeC
Confidence 377899999997655443 58899999999999999998653
No 314
>PRK09004 FMN-binding protein MioC; Provisional
Probab=25.16 E-value=2.3e+02 Score=23.69 Aligned_cols=56 Identities=27% Similarity=0.367 Sum_probs=36.6
Q ss_pred CcEEEEEeCcccHH-HHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCCceEEEEecC-chh
Q 021654 12 PLKIIAGADSFGAE-LKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGT-GVG 81 (309)
Q Consensus 12 ~mki~i~~D~~g~~-lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~va~~v~~~~~~~~~~~gi~~Cgt-G~G 81 (309)
+..|+-||.-.-.+ +-+.|.+.|++.|++|.-+-. .+ . ..+. ..+.-|++|.| |.|
T Consensus 3 ~i~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~~~---~~----~-~~l~------~~~~li~~~sT~G~G 60 (146)
T PRK09004 3 DITLISGSTLGGAEYVADHLAEKLEEAGFSTETLHG---PL----L-DDLS------ASGLWLIVTSTHGAG 60 (146)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHHcCCceEEecc---CC----H-HHhc------cCCeEEEEECCCCCC
Confidence 35678888876544 778888999999988763211 11 1 2232 34678888877 888
No 315
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=25.15 E-value=2.8e+02 Score=26.93 Aligned_cols=60 Identities=13% Similarity=0.151 Sum_probs=39.8
Q ss_pred EEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCCCCc--chhHHHHHHhhcCCCCCCCceEEEEecCc
Q 021654 14 KIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYY--SIGAEVGRRVSSSDSSDTTTRGLVACGTG 79 (309)
Q Consensus 14 ki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~~y~--~~a~~va~~v~~~~~~~~~~~gi~~CgtG 79 (309)
|+.|-+|..-. +.+.+++.|++.|.++.-|....-| +...++++.+.+ ..+|. |+-.|.|
T Consensus 24 r~livtd~~~~-~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~----~~~D~-IIaiGGG 85 (374)
T cd08183 24 RVLLVTGASSL-RAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARN----AGCDV-VIAIGGG 85 (374)
T ss_pred cEEEEECCchH-HHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHh----cCCCE-EEEecCc
Confidence 78888887555 7788999999999877666432222 344566666665 55665 5555555
No 316
>PLN02714 thiamin pyrophosphokinase
Probab=25.15 E-value=3.2e+02 Score=24.87 Aligned_cols=34 Identities=9% Similarity=0.093 Sum_probs=23.4
Q ss_pred HHHHHHHHhCCCcEEEecCC-CCcchhHHHHHHhh
Q 021654 28 DALVSHLRSLNIDVEDLGTS-DYYSIGAEVGRRVS 61 (309)
Q Consensus 28 ~~l~~~l~~~g~ev~d~G~~-~y~~~a~~va~~v~ 61 (309)
+..+++++++|.+++-+=+. ||.|+-.++-.++.
T Consensus 67 ~e~~~~~~~~~~~i~~~~~eKD~TD~e~Al~~~~~ 101 (229)
T PLN02714 67 PEVLDFYSNLGTKIVDESHDQDTTDLHKCIAYIRD 101 (229)
T ss_pred HHHHHHHHHCCCEEEECCCCcccCHHHHHHHHHHH
Confidence 45677778888888877553 78887666655543
No 317
>PLN02868 acyl-CoA thioesterase family protein
Probab=25.12 E-value=1.9e+02 Score=28.45 Aligned_cols=47 Identities=17% Similarity=0.134 Sum_probs=28.8
Q ss_pred EEcCCCcCCCeecCCceEEEEEecEEEEEEeeCC-e--EEEecCCcEEEE
Q 021654 219 RFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKG-E--RFDLTVGDYLFT 265 (309)
Q Consensus 219 ~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~-~--~~~L~pGD~v~I 265 (309)
++++|..+-..-.+...+++|++|++++.....+ + ...+.+||++=.
T Consensus 35 ~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 35 RYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGY 84 (413)
T ss_pred EECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeeh
Confidence 4455554433334455679999999998543222 1 356789997653
No 318
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.06 E-value=1.3e+02 Score=22.84 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=25.4
Q ss_pred EEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC
Q 021654 14 KIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS 47 (309)
Q Consensus 14 ki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~ 47 (309)
+|.+|-.-.+- =++.+++.|++.||.+.|+..+
T Consensus 42 ~vlvGi~~~~~-~~~~l~~~l~~~g~~~~dls~n 74 (81)
T cd04907 42 RVLVGIQVPDA-DLDELKERLDALGYPYQEETDN 74 (81)
T ss_pred eEEEEEEeChH-HHHHHHHHHHHcCCCeEECCCC
Confidence 47777665544 5578899999999999998754
No 319
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=24.91 E-value=1.1e+02 Score=24.68 Aligned_cols=32 Identities=22% Similarity=0.103 Sum_probs=18.2
Q ss_pred cEEEEEeC-cccHHHHHHHHHHHHhCCCcEEEec
Q 021654 13 LKIIAGAD-SFGAELKDALVSHLRSLNIDVEDLG 45 (309)
Q Consensus 13 mki~i~~D-~~g~~lk~~l~~~l~~~g~ev~d~G 45 (309)
|||++.|| |.+...-+++.+++ ++.-.|+..|
T Consensus 1 Mki~~~sD~H~~~~~~~~~~~~~-~~~d~vi~~G 33 (156)
T PF12850_consen 1 MKIAVISDLHGNLDALEAVLEYI-NEPDFVIILG 33 (156)
T ss_dssp EEEEEEE--TTTHHHHHHHHHHH-TTESEEEEES
T ss_pred CEEEEEeCCCCChhHHHHHHHHh-cCCCEEEECC
Confidence 89999999 55544434555555 2234455555
No 320
>PLN02591 tryptophan synthase
Probab=24.58 E-value=5.5e+02 Score=23.79 Aligned_cols=92 Identities=15% Similarity=0.038 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEecCCCCc-chhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCCCceEEEEeCCHHH
Q 021654 24 AELKDALVSHLRSLNIDVEDLGTSDYY-SIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKNPGVFATTCLTPAD 102 (309)
Q Consensus 24 ~~lk~~l~~~l~~~g~ev~d~G~~~y~-~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~~giraa~~~~~~~ 102 (309)
++-.+.+++.+++.|.+.+-+=+.+.+ +-..++++. ...+-=++.-+| +.|.|..+-.+...
T Consensus 117 ~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~--------~~gFIY~Vs~~G---------vTG~~~~~~~~~~~ 179 (250)
T PLN02591 117 LEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEA--------SEGFVYLVSSTG---------VTGARASVSGRVES 179 (250)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHh--------CCCcEEEeeCCC---------CcCCCcCCchhHHH
Confidence 345566777777788777766543332 222333332 112222333333 33666665555444
Q ss_pred -HHHhHhhcCceEeEeccccCCHHHHHHHHHH
Q 021654 103 -ALNTRSINNCNVLAVSGMSTSKESAVEILDT 133 (309)
Q Consensus 103 -A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~ 133 (309)
.+..|++.+.-|++ |..+..++.++++.+.
T Consensus 180 ~i~~vk~~~~~Pv~v-GFGI~~~e~v~~~~~~ 210 (250)
T PLN02591 180 LLQELKEVTDKPVAV-GFGISKPEHAKQIAGW 210 (250)
T ss_pred HHHHHHhcCCCceEE-eCCCCCHHHHHHHHhc
Confidence 77888888776664 9999999999887764
No 321
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=24.55 E-value=2.6e+02 Score=25.61 Aligned_cols=74 Identities=14% Similarity=0.163 Sum_probs=45.1
Q ss_pred hhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCCCce--EEEEeCCHHHHHHhHhhcCceEeEecccc-------C
Q 021654 52 IGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKNPGV--FATTCLTPADALNTRSINNCNVLAVSGMS-------T 122 (309)
Q Consensus 52 ~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~~gi--raa~~~~~~~A~~~r~hN~aNvl~lg~~~-------~ 122 (309)
+|.++++.|.. | --|++.+ |-=+...|.-++.. .-.+..+...|.....++|.+|+.+||.+ +
T Consensus 82 IA~~Aa~lI~~----g---~tIflD~-GtT~~~la~~L~~~~~ltvvTnsl~i~~~l~~~~~~~villGG~~~~~~~~~~ 153 (252)
T PRK10681 82 AAQLAATLVEP----N---QTLFFDC-GTTTPWIIEAIDNELPFTAVCYSLNTFLALQEKPHCRAILCGGEFHASNAIFK 153 (252)
T ss_pred HHHHHHhhcCC----C---CEEEEEC-CccHHHHHHhcCCCCCeEEEECCHHHHHHHhhCCCCEEEEECcEEecCcceee
Confidence 66666666665 2 2454543 33344455555443 34555677778777788999999999984 3
Q ss_pred CHHHHHHHHHHH
Q 021654 123 SKESAVEILDTW 134 (309)
Q Consensus 123 ~~~~a~~i~~~~ 134 (309)
|+ .+.+.++.|
T Consensus 154 G~-~~~~~l~~~ 164 (252)
T PRK10681 154 PL-DFQQTLDNI 164 (252)
T ss_pred CH-HHHHHHHhh
Confidence 43 344555554
No 322
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=24.34 E-value=88 Score=31.11 Aligned_cols=45 Identities=27% Similarity=0.428 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCCceEEEEecCch
Q 021654 26 LKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGV 80 (309)
Q Consensus 26 lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~ 80 (309)
+-++|..||++ |--|+|=|-..|+|.- +=++.+.+ +|||+-|+|+
T Consensus 87 ~I~~L~p~Lek-gDiIIDGGNs~y~dT~-RR~~el~k--------~GilfvG~GV 131 (487)
T KOG2653|consen 87 FIEELVPYLEK-GDIIIDGGNSEYQDTE-RRCRELAK--------KGILFVGSGV 131 (487)
T ss_pred HHHHHHhhcCC-CCEEEeCCcccCcchH-HHHHHHHh--------cCcEEEecCc
Confidence 55677777764 8889999988899974 44555553 7999988886
No 323
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=24.21 E-value=2.8e+02 Score=26.86 Aligned_cols=62 Identities=15% Similarity=0.083 Sum_probs=41.1
Q ss_pred EEEEEeCcccHH---HHHHHHHHHHhCCCcEEEec-CCCCc--chhHHHHHHhhcCCCCCCCceEEEEecCch
Q 021654 14 KIIAGADSFGAE---LKDALVSHLRSLNIDVEDLG-TSDYY--SIGAEVGRRVSSSDSSDTTTRGLVACGTGV 80 (309)
Q Consensus 14 ki~i~~D~~g~~---lk~~l~~~l~~~g~ev~d~G-~~~y~--~~a~~va~~v~~~~~~~~~~~gi~~CgtG~ 80 (309)
|+.|-+|...+. +-+.+++.|++.|+++.-|. ...-| +...++++.+.+ ..+| .|+--|.|-
T Consensus 25 r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~----~~~D-~IIavGGGS 92 (375)
T cd08179 25 KAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMRE----FEPD-WIIALGGGS 92 (375)
T ss_pred eEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHh----cCCC-EEEEeCCcc
Confidence 688888875544 55899999999999888774 33233 345666677665 5565 455555553
No 324
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.09 E-value=97 Score=31.10 Aligned_cols=35 Identities=26% Similarity=0.276 Sum_probs=31.6
Q ss_pred CcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecC
Q 021654 12 PLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGT 46 (309)
Q Consensus 12 ~mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~ 46 (309)
+.||.|||.|.+-..-+.|+..|++.|++++=+-+
T Consensus 167 K~kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~ 201 (429)
T PF10100_consen 167 KKKIYIGSTHSNSPELDKLCRLLAQLGIQLEVMDN 201 (429)
T ss_pred hceEEEEeCCCCChHHHHHHHHHHHcCCeEEEeCC
Confidence 35899999999999999999999999999987764
No 325
>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]
Probab=23.60 E-value=4.2e+02 Score=25.68 Aligned_cols=56 Identities=20% Similarity=0.127 Sum_probs=41.1
Q ss_pred CeecCCceE-EEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEE
Q 021654 228 AHHHTFGHD-LVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKW 285 (309)
Q Consensus 228 ~H~H~~~e~-vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~ 285 (309)
......+++ ++..+|.+.+ .+.=.+..+.|++...||.|...++.-.+...-+|+=
T Consensus 149 afyNsDGDFLiVPQ~G~L~I--~TEfGrllV~P~EI~VIpqG~RFsi~v~~~sRGYilE 205 (446)
T KOG1417|consen 149 AFYNSDGDFLIVPQQGRLWI--TTEFGRLLVTPNEIAVIPQGIRFSIDVPGPSRGYILE 205 (446)
T ss_pred eeecCCCCEEEecccCcEEE--EeeccceeecccceEEeecccEEEEecCCCCcceEEE
Confidence 344455555 5667787777 4445678999999999999999998887776655543
No 326
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=23.56 E-value=2.8e+02 Score=28.94 Aligned_cols=75 Identities=20% Similarity=0.202 Sum_probs=47.9
Q ss_pred CCcEEEEEeCcccHH-HHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCCceEEEEecC-chhhh-----
Q 021654 11 HPLKIIAGADSFGAE-LKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGT-GVGVA----- 83 (309)
Q Consensus 11 ~~mki~i~~D~~g~~-lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~va~~v~~~~~~~~~~~gi~~Cgt-G~G~~----- 83 (309)
+++.|+-||--.-.+ +-+.|.+.|++.|+++.=.-..+|.. +.+. ..+.-|++|.| |-|-.
T Consensus 59 ~~i~IlygSqTGnae~~A~~l~~~l~~~g~~~~v~~~~d~~~------~~l~------~~~~li~v~ST~GeGe~Pdna~ 126 (597)
T TIGR01931 59 KRVTILYGSQTGNARRLAKRLAEKLEAAGFSVRLSSADDYKF------KQLK------KERLLLLVISTQGEGEPPEEAI 126 (597)
T ss_pred CeEEEEEECCchHHHHHHHHHHHHHHhCCCccEEechHHCCH------hhcc------cCceEEEEeCCCCCCcCCHHHH
Confidence 456688888765544 78899999999998765333334431 2222 34678888988 88821
Q ss_pred --------hhhcCCCceEEEEe
Q 021654 84 --------IFANKNPGVFATTC 97 (309)
Q Consensus 84 --------iaaNK~~giraa~~ 97 (309)
.-+.+++|++-|+.
T Consensus 127 ~F~~~L~~~~~~~L~~~~~aVf 148 (597)
T TIGR01931 127 SFHKFLHSKKAPKLENLRYSVL 148 (597)
T ss_pred HHHHHHHhCCCcccCCCeEEEE
Confidence 12446677776655
No 327
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=23.51 E-value=3e+02 Score=28.91 Aligned_cols=75 Identities=17% Similarity=0.224 Sum_probs=49.9
Q ss_pred CCcEEEEEeCcccHH-HHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCCceEEEEecC-chh-------
Q 021654 11 HPLKIIAGADSFGAE-LKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGT-GVG------- 81 (309)
Q Consensus 11 ~~mki~i~~D~~g~~-lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~va~~v~~~~~~~~~~~gi~~Cgt-G~G------- 81 (309)
+++.|+-||.-.-.+ +-+.|.+.|++.|++|.=.-..+|.. +.+. +.+..|+||.| |-|
T Consensus 62 ~~v~IlygSqTGnae~lA~~la~~l~~~g~~~~v~~~~d~~~------~~L~------~~~~vl~v~ST~G~Ge~Pdna~ 129 (600)
T PRK10953 62 PGITLISASQTGNARRVAEQLRDDLLAAKLNVNLVNAGDYKF------KQIA------QEKLLIVVTSTQGEGEPPEEAV 129 (600)
T ss_pred CeEEEEEEcCchHHHHHHHHHHHHHHhCCCCcEEechHhCCH------hHhc------cCCeEEEEECCCCCCCCChhHH
Confidence 345688899876555 78899999999998875444445521 1222 24678888888 888
Q ss_pred ------hhhhhcCCCceEEEEe
Q 021654 82 ------VAIFANKNPGVFATTC 97 (309)
Q Consensus 82 ------~~iaaNK~~giraa~~ 97 (309)
.+..+.+++|++-|+.
T Consensus 130 ~F~~~L~~~~~~~L~~~~faVf 151 (600)
T PRK10953 130 ALHKFLFSKKAPKLENTAFAVF 151 (600)
T ss_pred HHHHHHhhCcCcCCCCCEEEEE
Confidence 1223456788887765
No 328
>PRK07742 phosphate butyryltransferase; Validated
Probab=23.43 E-value=1.6e+02 Score=27.87 Aligned_cols=36 Identities=19% Similarity=0.089 Sum_probs=22.7
Q ss_pred hhHHHHHHhhcCCCCCCCceEEEEecCchhhhh---hhcCCCceE
Q 021654 52 IGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAI---FANKNPGVF 93 (309)
Q Consensus 52 ~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~i---aaNK~~gir 93 (309)
.+....+.|.+ |++| ++ +||.=-|-.+ +.+|.+|++
T Consensus 78 s~~~a~~lV~~----G~aD-~l-vsG~~tta~~~~~~l~~~~Gi~ 116 (299)
T PRK07742 78 AAELAVKAVRN----GEAD-VL-MKGNVPTANILKAVLNKEWGLR 116 (299)
T ss_pred HHHHHHHHHHC----CCCC-EE-EECCcCHHHHHHHHhccccCCC
Confidence 34566777877 8887 33 3554344445 577788875
No 329
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=23.42 E-value=3.3e+02 Score=27.26 Aligned_cols=35 Identities=17% Similarity=0.376 Sum_probs=23.6
Q ss_pred CCcEEEEEeCcc-cHHHHHHHHHHHHhCCC--cEEEec
Q 021654 11 HPLKIIAGADSF-GAELKDALVSHLRSLNI--DVEDLG 45 (309)
Q Consensus 11 ~~mki~i~~D~~-g~~lk~~l~~~l~~~g~--ev~d~G 45 (309)
+.+||++-+-|. |..+-..|.+.|++.|. +|+...
T Consensus 169 ~~lkVvvD~~~G~~~~~~~~l~~~l~~lG~~v~v~~~~ 206 (456)
T PRK15414 169 TPLKLVINSGNGAAGPVVDAIEARFKALGAPVELIKVH 206 (456)
T ss_pred CCCEEEEECCCCcchhhHHHHHHHHHhcCCCeEEEEee
Confidence 468999998884 33344555567899998 555443
No 330
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.35 E-value=6.1e+02 Score=23.63 Aligned_cols=84 Identities=13% Similarity=0.085 Sum_probs=52.1
Q ss_pred cEEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCCC
Q 021654 13 LKIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKNP 90 (309)
Q Consensus 13 mki~i~~D~--~g~~lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~~ 90 (309)
|||.|-+-. ...++.+.|+++|+++|+++ | . ...|..|.+-|=|.=.
T Consensus 1 M~i~Ii~~~~~~~~~~~~~l~~~l~~~g~~~-~------------------~----~~~Dlvi~iGGDGT~L-------- 49 (265)
T PRK04885 1 MKVAIISNGDPKSKRVASKLKKYLKDFGFIL-D------------------E----KNPDIVISVGGDGTLL-------- 49 (265)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHcCCcc-C------------------C----cCCCEEEEECCcHHHH--------
Confidence 677765322 24457788999999999883 2 1 2468999998888321
Q ss_pred ceEEEEeCCHHHHHHhHhhcC--ceE--eEeccc---c---CCHHHHHHHHHHHHcCCCC
Q 021654 91 GVFATTCLTPADALNTRSINN--CNV--LAVSGM---S---TSKESAVEILDTWLKTPFK 140 (309)
Q Consensus 91 giraa~~~~~~~A~~~r~hN~--aNv--l~lg~~---~---~~~~~a~~i~~~~l~~~f~ 140 (309)
+.+|..++ .|+ |.+-.. + +.++...++++..++.+|.
T Consensus 50 -------------~a~~~~~~~~~~iPilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~y~ 96 (265)
T PRK04885 50 -------------SAFHRYENQLDKVRFVGVHTGHLGFYTDWRPFEVDKLVIALAKDPGQ 96 (265)
T ss_pred -------------HHHHHhcccCCCCeEEEEeCCCceecccCCHHHHHHHHHHHHcCCce
Confidence 22333333 334 332222 1 2467788899999988875
No 331
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=22.89 E-value=3.6e+02 Score=26.78 Aligned_cols=67 Identities=15% Similarity=0.141 Sum_probs=39.5
Q ss_pred CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-C------C--cchhHHHHHHhhcCCC------CCCCceEEEE
Q 021654 11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-D------Y--YSIGAEVGRRVSSSDS------SDTTTRGLVA 75 (309)
Q Consensus 11 ~~mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~-~------y--~~~a~~va~~v~~~~~------~~~~~~gi~~ 75 (309)
..+||++-+-|.. -...+.+.|++.|.+|+-+-.. | . +..=..+.+.|.+... ++.+||-+++
T Consensus 170 ~~~kVvvD~~~G~--~~~~~~~ll~~lG~~v~~~n~~~dg~~~~~~~~~~~l~~l~~~v~~~~adlGia~D~DgDRl~~v 247 (443)
T PRK10887 170 RGLKIVVDCANGA--TYHIAPNVFRELGAEVIAIGCEPNGLNINDECGATDPEALQAAVLAEKADLGIAFDGDGDRVIMV 247 (443)
T ss_pred CCCEEEEECCCch--HHHHHHHHHHHhCCeEEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcCCCeeeEECCCCceEEEE
Confidence 4789999888853 4466777788889998855321 1 1 1233456666665110 3444555555
Q ss_pred ecCc
Q 021654 76 CGTG 79 (309)
Q Consensus 76 CgtG 79 (309)
...|
T Consensus 248 d~~G 251 (443)
T PRK10887 248 DHLG 251 (443)
T ss_pred CCCC
Confidence 5554
No 332
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=22.88 E-value=3.7e+02 Score=26.67 Aligned_cols=104 Identities=15% Similarity=0.105 Sum_probs=57.9
Q ss_pred CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-C--C------cchhHHHHHHhhcCCC------CCCCceEEEE
Q 021654 11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-D--Y------YSIGAEVGRRVSSSDS------SDTTTRGLVA 75 (309)
Q Consensus 11 ~~mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~-~--y------~~~a~~va~~v~~~~~------~~~~~~gi~~ 75 (309)
..+||++-+-|.. -...+...|++.|.+|+-+-.. | + ++.-..+.+.|.+..+ ++.+||-+++
T Consensus 171 ~~lkVvvD~~~G~--~~~~~~~ll~~lg~~v~~in~~~d~~~~~~~~~~~~l~~l~~~v~~~~adlGia~DgD~DR~~~v 248 (443)
T TIGR01455 171 SGLKVVLDCANGA--AYKVAPHVFRELGAEVIAIGVEPDGLNINDGCGSTHLDALQKAVREHGADLGIAFDGDADRVLAV 248 (443)
T ss_pred CCCEEEEECCCch--HHHHHHHHHHHcCCEEEEEccCCCCCCCCCCCCCCCHHHHHHHHhhcCCCEEEEEcCCCceEEEE
Confidence 4689999998854 4567778888999998865432 1 1 1223455566654211 4556666666
Q ss_pred ecCchh------hhhhhc------CCC--ceEEEEeCCHHHHHHhHhhcCceEeEe
Q 021654 76 CGTGVG------VAIFAN------KNP--GVFATTCLTPADALNTRSINNCNVLAV 117 (309)
Q Consensus 76 CgtG~G------~~iaaN------K~~--giraa~~~~~~~A~~~r~hN~aNvl~l 117 (309)
+..|.= +++.|+ +.+ .|..-+..+....+++++ ++.+|+.-
T Consensus 249 d~~G~~l~~d~~~al~a~~ll~~~~~~~~~vv~~v~ss~~l~~~a~~-~g~~v~~t 303 (443)
T TIGR01455 249 DANGRIVDGDQILYIIARALKESGELAGNTVVATVMSNLGLERALEK-LGLTLIRT 303 (443)
T ss_pred CCCCcEeCHHHHHHHHHHHHHHhcCCCCCcEEEEccCCHHHHHHHHH-cCCeEEEe
Confidence 666631 122221 122 355555555555566665 45555544
No 333
>PRK01424 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=22.78 E-value=77 Score=31.18 Aligned_cols=62 Identities=24% Similarity=0.366 Sum_probs=45.1
Q ss_pred EEEEeCcccHHHHHHHHHHHHhCCCcEEEe------cCC---------------CCcchhHHHHHHhhcCCCCCCCceEE
Q 021654 15 IIAGADSFGAELKDALVSHLRSLNIDVEDL------GTS---------------DYYSIGAEVGRRVSSSDSSDTTTRGL 73 (309)
Q Consensus 15 i~i~~D~~g~~lk~~l~~~l~~~g~ev~d~------G~~---------------~y~~~a~~va~~v~~~~~~~~~~~gi 73 (309)
=++++--||...-+.|.+.|+++|+++..+ |++ .|..+....|+.|.+. ....+=|
T Consensus 196 GSVAAPTAGLHFT~~ll~~L~~kGv~~a~vTLHVG~GTF~PV~~e~i~~H~MH~E~~~I~~eta~~In~a---k~~G~RI 272 (366)
T PRK01424 196 GSVAAPTAGLHFTKDILDKLKAKGIQTAFLTLHVGAGTFLPVKTENIHEHKMHTEYCSITPETAEIINKA---KQEGRRI 272 (366)
T ss_pred CceecCCCcCCCCHHHHHHHHHCCCeEEEEEEeecCCCCcCccccccccCCccceEEEECHHHHHHHHHH---HHcCCeE
Confidence 357788899999999999999999988764 443 1778888999998762 2222345
Q ss_pred EEecCc
Q 021654 74 VACGTG 79 (309)
Q Consensus 74 ~~CgtG 79 (309)
+-.||=
T Consensus 273 iAVGTT 278 (366)
T PRK01424 273 IAVGTT 278 (366)
T ss_pred EEEecc
Confidence 555554
No 334
>PF13271 DUF4062: Domain of unknown function (DUF4062)
Probab=22.48 E-value=3.4e+02 Score=20.28 Aligned_cols=64 Identities=13% Similarity=0.102 Sum_probs=42.3
Q ss_pred EEEEEeCcccHH-HHHHHHHHHHhCCCcEEEecCCCC-cchhHHHHHHhhcCCCCCCCceEEEEecCchhh
Q 021654 14 KIIAGADSFGAE-LKDALVSHLRSLNIDVEDLGTSDY-YSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGV 82 (309)
Q Consensus 14 ki~i~~D~~g~~-lk~~l~~~l~~~g~ev~d~G~~~y-~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~ 82 (309)
||+|.|=...+. .++.|++.|...|++.+.+..... ..-...++..-.+ ++|.-|+|=|.-=|-
T Consensus 1 rVFiSSt~~Dl~~eR~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~-----~cDifI~ilG~rYG~ 66 (83)
T PF13271_consen 1 RVFISSTFRDLKEERDALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVD-----ECDIFILILGNRYGS 66 (83)
T ss_pred CEEEecChhhHHHHHHHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHh-----hCCEEEEeeccccCC
Confidence 577777665554 678999999999988876654321 2345667766553 577777776654443
No 335
>PRK14321 glmM phosphoglucosamine mutase; Provisional
Probab=22.46 E-value=3.6e+02 Score=26.91 Aligned_cols=67 Identities=12% Similarity=0.017 Sum_probs=40.0
Q ss_pred CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC---CC-------cchhHHHHHHhhcCCC------CCCCceEEE
Q 021654 11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS---DY-------YSIGAEVGRRVSSSDS------SDTTTRGLV 74 (309)
Q Consensus 11 ~~mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~---~y-------~~~a~~va~~v~~~~~------~~~~~~gi~ 74 (309)
++.||++-+-|.. -...+.+.|++.|.+|+-+... .+ |+.-..+.+.|.+... ++.+||-.+
T Consensus 164 ~~~kVvvD~~~G~--~~~~~~~il~~lg~~v~~i~~~~d~~f~~~p~p~~~~l~~l~~~v~~~~adlGia~DgD~DR~~v 241 (449)
T PRK14321 164 NSYTVVVDSGNGA--GSILSPYLQRELGNKVISLNSHPSGFFVRELEPNAKSLSMLAKTVKVLKADVGIAHDGDADRIGV 241 (449)
T ss_pred CCCEEEEECCCch--HHHHHHHHHHHcCCEEEEeCccCCCCCCCCCCCchhhHHHHHHHHHHCCCCEEEEecCCCceEEE
Confidence 5678999888754 3566777778889998865432 12 2344556666655110 455555555
Q ss_pred EecCc
Q 021654 75 ACGTG 79 (309)
Q Consensus 75 ~CgtG 79 (309)
++..|
T Consensus 242 vd~~G 246 (449)
T PRK14321 242 VDDQG 246 (449)
T ss_pred ECCCC
Confidence 55555
No 336
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=22.39 E-value=92 Score=28.16 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=18.6
Q ss_pred cEEEEEe--CcccHHHHHHHHHHHHhCCCcEEEec
Q 021654 13 LKIIAGA--DSFGAELKDALVSHLRSLNIDVEDLG 45 (309)
Q Consensus 13 mki~i~~--D~~g~~lk~~l~~~l~~~g~ev~d~G 45 (309)
|||+|.+ -++| ..|.+....+||||+-+=
T Consensus 1 mKIaiIgAsG~~G----s~i~~EA~~RGHeVTAiv 31 (211)
T COG2910 1 MKIAIIGASGKAG----SRILKEALKRGHEVTAIV 31 (211)
T ss_pred CeEEEEecCchhH----HHHHHHHHhCCCeeEEEE
Confidence 7887764 4555 334444456799999764
No 337
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=22.38 E-value=4e+02 Score=23.57 Aligned_cols=60 Identities=10% Similarity=0.125 Sum_probs=40.3
Q ss_pred EEEEeCcccHHHH-----------------HHHHHHHHhCCCcEEEecCC-CCcchhHHHHHHhhcCCCCCCCceEEEEe
Q 021654 15 IIAGADSFGAELK-----------------DALVSHLRSLNIDVEDLGTS-DYYSIGAEVGRRVSSSDSSDTTTRGLVAC 76 (309)
Q Consensus 15 i~i~~D~~g~~lk-----------------~~l~~~l~~~g~ev~d~G~~-~y~~~a~~va~~v~~~~~~~~~~~gi~~C 76 (309)
..||+|.+...++ +..+++++++|.+++-+=+. |+.|+-.++-.++.. ..+.-+++.
T Consensus 20 ~~i~aDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~~~eKD~TD~e~Al~~~~~~-----~~~~i~i~G 94 (203)
T TIGR01378 20 LVIAADGGANHLLKLGLTPDLIVGDFDSIDEEELDFYKKAGVKIIVFPPEKDTTDLELALKYALER-----GADEITILG 94 (203)
T ss_pred EEEEEChHHHHHHHCCCCCCEEEeCcccCCHHHHHHHHHcCCceEEcCCCCCCCHHHHHHHHHHHC-----CCCEEEEEc
Confidence 5678887665543 57888888888888887654 788876666555554 344555555
Q ss_pred cCc
Q 021654 77 GTG 79 (309)
Q Consensus 77 gtG 79 (309)
++|
T Consensus 95 a~G 97 (203)
T TIGR01378 95 ATG 97 (203)
T ss_pred CCC
Confidence 566
No 338
>PRK14316 glmM phosphoglucosamine mutase; Provisional
Probab=22.32 E-value=3.8e+02 Score=26.63 Aligned_cols=67 Identities=18% Similarity=0.153 Sum_probs=40.0
Q ss_pred CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-C--C------cchhHHHHHHhhcCCC------CCCCceEEEE
Q 021654 11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-D--Y------YSIGAEVGRRVSSSDS------SDTTTRGLVA 75 (309)
Q Consensus 11 ~~mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~-~--y------~~~a~~va~~v~~~~~------~~~~~~gi~~ 75 (309)
.++||++-+-|.. -...+.+.|++.|.+|+-+-.. | + ++.-..+.+.|.+... ++.+||-+++
T Consensus 172 ~~lkvvvD~~nG~--~~~~~~~ll~~lg~~v~~in~~~dg~~~~~~~~~~~~~~l~~~v~~~~adlGia~DgDaDR~~~v 249 (448)
T PRK14316 172 SGLKVALDCANGA--TSSLAPRLFADLGADVTVIGTSPDGLNINDGVGSTHPEALQELVVEKGADLGLAFDGDADRLIAV 249 (448)
T ss_pred CCCEEEEECCCch--hhHHHHHHHHHcCCeEEEEccCCCCCCCCCCCCCCCHHHHHHHHhhcCCCEEEEEcCCCceEEEE
Confidence 4679999888853 3667788888899988865321 1 1 1223456677765211 4445555555
Q ss_pred ecCc
Q 021654 76 CGTG 79 (309)
Q Consensus 76 CgtG 79 (309)
..+|
T Consensus 250 d~~G 253 (448)
T PRK14316 250 DENG 253 (448)
T ss_pred CCCC
Confidence 5554
No 339
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=22.30 E-value=4.4e+02 Score=21.53 Aligned_cols=61 Identities=23% Similarity=0.243 Sum_probs=34.6
Q ss_pred EEEEEeCcccHHH---HHHHHHHHHhC-CCcEE-EecC-CC--CcchhHHHHHHhhcCCCCCCCceEEEEecCch
Q 021654 14 KIIAGADSFGAEL---KDALVSHLRSL-NIDVE-DLGT-SD--YYSIGAEVGRRVSSSDSSDTTTRGLVACGTGV 80 (309)
Q Consensus 14 ki~i~~D~~g~~l---k~~l~~~l~~~-g~ev~-d~G~-~~--y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~ 80 (309)
||.|.=.|..-+- =..+.++|++. |++|+ |.=. .. -.+...=+.+.+. .+|+.|+||.-|.
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~------~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIR------EADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHh------cCCEEEEEeccch
Confidence 4566544444333 45677889999 99977 3200 01 1112222333344 4799999999773
No 340
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=22.29 E-value=4e+02 Score=26.50 Aligned_cols=103 Identities=13% Similarity=0.144 Sum_probs=56.3
Q ss_pred CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-C--C------cchhHHHHHHhhcCCC------CCCCceEEEE
Q 021654 11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-D--Y------YSIGAEVGRRVSSSDS------SDTTTRGLVA 75 (309)
Q Consensus 11 ~~mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~-~--y------~~~a~~va~~v~~~~~------~~~~~~gi~~ 75 (309)
..+||++-+-|.. -...+...|++.|.+|+-+-.. | + +.-=..+.+.|.+..+ ++.+||-+++
T Consensus 175 ~~lkVvvD~~~G~--~~~~~~~ll~~lG~~v~~i~~~~dg~~~~~~~~~~~l~~l~~~v~~~~adlGia~DgDgDR~~iv 252 (448)
T PRK14315 175 DGLRVVVDCANGA--AYKVAPEALWELGAEVITIGVEPNGFNINEECGSTHPEALAKKVREVRADIGIALDGDADRVIIV 252 (448)
T ss_pred CCCEEEEECCCch--HHHHHHHHHHHcCCeEEEeccCCCCCCCCCCCCCCCHHHHHHHHHHcCCCEEEEEcCCCceEEEE
Confidence 4689999888853 3567777888899998865432 1 1 1122346666655211 4555666666
Q ss_pred ecCchh------hhhhh-----c-C--CCceEEEEeCCHHHHHHhHhhcCceEeE
Q 021654 76 CGTGVG------VAIFA-----N-K--NPGVFATTCLTPADALNTRSINNCNVLA 116 (309)
Q Consensus 76 CgtG~G------~~iaa-----N-K--~~giraa~~~~~~~A~~~r~hN~aNvl~ 116 (309)
+..|.= +.+.+ + + -..|..-+..+....++++++ ++.++-
T Consensus 253 d~~G~~i~~d~~~~l~a~~ll~~~~~~~~~vV~~v~ss~~i~~~a~~~-g~~v~~ 306 (448)
T PRK14315 253 DEKGHVVDGDQLMALIAESWAEDGRLRGGGIVATVMSNLGLERFLADR-GLTLER 306 (448)
T ss_pred cCCCcEeCHHHHHHHHHHHHHHhCCCCCCeEEEEecCChHHHHHHHHc-CCeEEE
Confidence 666511 11112 1 2 234555555555555666654 344443
No 341
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i
Probab=22.28 E-value=1.2e+02 Score=23.04 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhCCCcEEEecCC--CCcc
Q 021654 25 ELKDALVSHLRSLNIDVEDLGTS--DYYS 51 (309)
Q Consensus 25 ~lk~~l~~~l~~~g~ev~d~G~~--~y~~ 51 (309)
.+|+.+...|+..|+++.+++.. +||+
T Consensus 83 ~v~~~l~~~~~~~Gi~i~~v~i~~i~~~~ 111 (121)
T cd02106 83 EVREALQEDLDKYGIEVVDVRIKDIDPPE 111 (121)
T ss_pred HHHHHHHHHHHhcCCEEEEEEEEecCCCH
Confidence 47788888899999999999865 4665
No 342
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=22.27 E-value=1.3e+02 Score=29.79 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=27.3
Q ss_pred CCCcEEEEEeCc------ccHH-HHHHHHHHHHhCCCcEEEecC
Q 021654 10 PHPLKIIAGADS------FGAE-LKDALVSHLRSLNIDVEDLGT 46 (309)
Q Consensus 10 ~~~mki~i~~D~------~g~~-lk~~l~~~l~~~g~ev~d~G~ 46 (309)
.++|||++-.+. .|.+ .-..+.++|+++||+|.=+.+
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~ 99 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTT 99 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEec
Confidence 678999999763 4554 234677789999999976644
No 343
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=22.25 E-value=1.3e+02 Score=32.05 Aligned_cols=58 Identities=21% Similarity=0.150 Sum_probs=35.7
Q ss_pred CcccHHHHHHHHHHHHhC-CCcEEEecC--CCCcchhHHHHHHhhcCCCCCCCceEEEEecCchh
Q 021654 20 DSFGAELKDALVSHLRSL-NIDVEDLGT--SDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVG 81 (309)
Q Consensus 20 D~~g~~lk~~l~~~l~~~-g~ev~d~G~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G 81 (309)
|.+|-.+.+.+.+.++.. |+++.+++. ++...+...+.+.+.. ..+|.-|+--|||+|
T Consensus 477 D~sg~~~~~il~~n~~~l~G~~v~~~~iv~Dd~~~I~~~l~~~~~~----~~~DlVItTGGts~g 537 (659)
T PLN02699 477 DRSGPRAVSVVNSSSEKLGGAKVVATAVVPDDVEKIKDVLQKWSDI----DRMDLILTLGGTGFT 537 (659)
T ss_pred cccchHHHHHHHhhhhhcCCcEEEEEEEcCCCHHHHHHHHHHHHhc----CCCCEEEECCCccCC
Confidence 334445555665555555 999999985 4566677777666543 356655555555554
No 344
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=22.24 E-value=5e+02 Score=22.56 Aligned_cols=100 Identities=13% Similarity=0.043 Sum_probs=51.7
Q ss_pred CcEEEEEeCcccHH-HHHHHHHHHHhCCCc-EEEecCCCCc----chhHHHHH---HhhcCCCCCCCceEEEEecCchhh
Q 021654 12 PLKIIAGADSFGAE-LKDALVSHLRSLNID-VEDLGTSDYY----SIGAEVGR---RVSSSDSSDTTTRGLVACGTGVGV 82 (309)
Q Consensus 12 ~mki~i~~D~~g~~-lk~~l~~~l~~~g~e-v~d~G~~~y~----~~a~~va~---~v~~~~~~~~~~~gi~~CgtG~G~ 82 (309)
+|||.+-||-=+-. .-+...+.....+.+ |+-.|-...+ .+...++. .|. |.+|+...- .+...
T Consensus 1 ~m~ilviSDtH~~~~~~~~~~~~~~~~~~d~vih~GD~~~~~~~~~l~~~~~~~i~~V~-----GN~D~~~~~--~~~p~ 73 (172)
T COG0622 1 MMKILVISDTHGPLRAIEKALKIFNLEKVDAVIHAGDSTSPFTLDALEGGLAAKLIAVR-----GNCDGEVDQ--EELPE 73 (172)
T ss_pred CcEEEEEeccCCChhhhhHHHHHhhhcCCCEEEECCCcCCccchHHhhcccccceEEEE-----ccCCCcccc--ccCCh
Confidence 48999999977644 223334444444554 4556644222 22111111 222 556654332 11111
Q ss_pred hhhhcCCCceEEEEeCC--------HHHHHHhHhhcCceEeEecc
Q 021654 83 AIFANKNPGVFATTCLT--------PADALNTRSINNCNVLAVSG 119 (309)
Q Consensus 83 ~iaaNK~~giraa~~~~--------~~~A~~~r~hN~aNvl~lg~ 119 (309)
. .-=++-|+|-+++|- ...-..-.+-.++-||..|-
T Consensus 74 ~-~~~~~~g~ki~l~HGh~~~~~~~~~~l~~la~~~~~Dvli~GH 117 (172)
T COG0622 74 E-LVLEVGGVKIFLTHGHLYFVKTDLSLLEYLAKELGADVLIFGH 117 (172)
T ss_pred h-HeEEECCEEEEEECCCccccccCHHHHHHHHHhcCCCEEEECC
Confidence 1 112455788888873 55555555557788888774
No 345
>PRK12483 threonine dehydratase; Reviewed
Probab=22.22 E-value=1.9e+02 Score=29.79 Aligned_cols=64 Identities=20% Similarity=0.301 Sum_probs=42.5
Q ss_pred CceEEEEecCc---hhhhhhhcCCCceEEEEeCC---HHHHHHhHhhcCceEeEeccccCC-HHHHHHHHHH
Q 021654 69 TTRGLVACGTG---VGVAIFANKNPGVFATTCLT---PADALNTRSINNCNVLAVSGMSTS-KESAVEILDT 133 (309)
Q Consensus 69 ~~~gi~~CgtG---~G~~iaaNK~~giraa~~~~---~~~A~~~r~hN~aNvl~lg~~~~~-~~~a~~i~~~ 133 (309)
..+||+-|++| +|++++|.+. ||.|.++-. +..=...-+.-+|+|+-.|..+-. .+.|+++.+.
T Consensus 84 ~~~GVV~aSaGNha~gvA~aA~~l-Gi~~~IvmP~~tp~~Kv~~~r~~GAeVil~g~~~d~a~~~A~~la~e 154 (521)
T PRK12483 84 LARGVITASAGNHAQGVALAAARL-GVKAVIVMPRTTPQLKVDGVRAHGGEVVLHGESFPDALAHALKLAEE 154 (521)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHh-CCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHh
Confidence 45788888875 6889999876 999998854 233233444578999999875432 2444555543
No 346
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=22.22 E-value=2.1e+02 Score=27.57 Aligned_cols=48 Identities=8% Similarity=0.068 Sum_probs=30.7
Q ss_pred EEEEeCCHHHHHHhHhhcCceEeEe-ccccCCHHHHHHHHHHHHcCCCCC
Q 021654 93 FATTCLTPADALNTRSINNCNVLAV-SGMSTSKESAVEILDTWLKTPFKA 141 (309)
Q Consensus 93 raa~~~~~~~A~~~r~hN~aNvl~l-g~~~~~~~~a~~i~~~~l~~~f~~ 141 (309)
-|+.|.+-.- ..+..|+|--+|.- .++.++.+..+++.+..-.++++|
T Consensus 58 ~Cg~C~sC~~-~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g 106 (325)
T PRK06871 58 PCGQCHSCHL-FQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQHAQQG 106 (325)
T ss_pred CCCCCHHHHH-HhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhccccC
Confidence 3555543221 23345555444432 356799999999999988898887
No 347
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=22.17 E-value=1.4e+02 Score=28.04 Aligned_cols=35 Identities=29% Similarity=0.314 Sum_probs=26.3
Q ss_pred CcEEEEEeCcccHHHHH--HHHHHHHhCCCcEEEecC
Q 021654 12 PLKIIAGADSFGAELKD--ALVSHLRSLNIDVEDLGT 46 (309)
Q Consensus 12 ~mki~i~~D~~g~~lk~--~l~~~l~~~g~ev~d~G~ 46 (309)
+|||+|-+-..|-.+.. .|.++|.++||||.=++.
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~ 37 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGT 37 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEEC
Confidence 38999987755555543 688899999999986654
No 348
>PTZ00302 N-acetylglucosamine-phosphate mutase; Provisional
Probab=22.09 E-value=1.9e+02 Score=30.45 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=31.5
Q ss_pred CcEEEEEeCc--ccHHHHHHHHHHHH-hCCCcEEEecCC
Q 021654 12 PLKIIAGADS--FGAELKDALVSHLR-SLNIDVEDLGTS 47 (309)
Q Consensus 12 ~mki~i~~D~--~g~~lk~~l~~~l~-~~g~ev~d~G~~ 47 (309)
+-+|+||.|- +|-.|.+.+.+-|. ..|.+|+|+|.-
T Consensus 152 ~~~V~vGrDtR~Ss~~L~~al~~gl~~~~G~~v~d~G~~ 190 (585)
T PTZ00302 152 KAKVHVGRDTRPSSPELVSALLRGLKLLIGSNVRNFGIV 190 (585)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHhcCCcEEEeCCC
Confidence 4579999995 56779999999999 999999999963
No 349
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=22.04 E-value=1.4e+02 Score=31.04 Aligned_cols=72 Identities=22% Similarity=0.204 Sum_probs=46.7
Q ss_pred EEEEEeCcccHHHHHHHHHHHHhCCCcEE--EecCCCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCCCc
Q 021654 14 KIIAGADSFGAELKDALVSHLRSLNIDVE--DLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKNPG 91 (309)
Q Consensus 14 ki~i~~D~~g~~lk~~l~~~l~~~g~ev~--d~G~~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~~g 91 (309)
-|+.||+.. .+.-+...+.|++.|+++. =.+.+--|+-....++...+ ... -++||+.|. ++-.||
T Consensus 414 ~i~~gs~sd-~~~~~~~~~~l~~~g~~~~~~v~sahr~~~~~~~~~~~~~~----~~~--~v~i~~ag~-----~~~l~~ 481 (577)
T PLN02948 414 GIIMGSDSD-LPTMKDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSAHS----RGL--QVIIAGAGG-----AAHLPG 481 (577)
T ss_pred EEEECchhh-HHHHHHHHHHHHHcCCCeEEEEECCccCHHHHHHHHHHHHH----CCC--CEEEEEcCc-----cccchH
Confidence 367777764 5677888889999996633 23444566666666655543 222 388998884 666777
Q ss_pred eEEEEe
Q 021654 92 VFATTC 97 (309)
Q Consensus 92 iraa~~ 97 (309)
|.|++.
T Consensus 482 ~~a~~t 487 (577)
T PLN02948 482 MVASMT 487 (577)
T ss_pred HHhhcc
Confidence 777654
No 350
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=21.90 E-value=1.2e+02 Score=28.27 Aligned_cols=34 Identities=24% Similarity=-0.017 Sum_probs=25.4
Q ss_pred cEEEEEe-CcccHHHHHHHHHHHHhCCCcEEEecCC
Q 021654 13 LKIIAGA-DSFGAELKDALVSHLRSLNIDVEDLGTS 47 (309)
Q Consensus 13 mki~i~~-D~~g~~lk~~l~~~l~~~g~ev~d~G~~ 47 (309)
|||.|-+ |.+-...| .+.+.|+++||+|.-+-..
T Consensus 1 m~~~i~~~~~s~~s~~-~~~~a~~~~g~~v~~i~~~ 35 (300)
T PRK10446 1 MKIAILSRDGTLYSCK-RLREAAIQRGHLVEILDPL 35 (300)
T ss_pred CeEEEEecCCcchhHH-HHHHHHHHcCCeEEEEehH
Confidence 6777777 66666666 6778889999999876543
No 351
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=21.81 E-value=2e+02 Score=26.49 Aligned_cols=74 Identities=16% Similarity=0.145 Sum_probs=48.8
Q ss_pred hhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCCCce--EEEEeCCHHHHHHhHhhcCceEeEecccc-------C
Q 021654 52 IGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKNPGV--FATTCLTPADALNTRSINNCNVLAVSGMS-------T 122 (309)
Q Consensus 52 ~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~~gi--raa~~~~~~~A~~~r~hN~aNvl~lg~~~-------~ 122 (309)
+|.++|..|.. | +.-++=||| =.-..|-.+++. ....+++...|......++..|+.+||.+ +
T Consensus 81 IA~~Aa~lI~~----g--~~ifld~GT--T~~~la~~L~~~~~ltviTNsl~ia~~l~~~~~~~vi~~GG~~~~~~~~~~ 152 (253)
T COG1349 81 IAKAAATLIED----G--DTIFLDAGT--TTLALARALPDDNNLTVITNSLNIAAALLEKPNIEVILLGGTVRKKSGSFV 152 (253)
T ss_pred HHHHHHhhCCC----C--CEEEECCCc--HHHHHHHHhCcCCCeEEEeCCHHHHHHHHhCCCCeEEEeCcEEEcCCCeEE
Confidence 77777777765 2 334444444 344444444433 47888888888888888999999999984 3
Q ss_pred CHHHHHHHHHHH
Q 021654 123 SKESAVEILDTW 134 (309)
Q Consensus 123 ~~~~a~~i~~~~ 134 (309)
|+ .+.+.++.|
T Consensus 153 G~-~a~~~l~~~ 163 (253)
T COG1349 153 GP-LAEEFLRQF 163 (253)
T ss_pred cH-HHHHHHHhC
Confidence 43 455555554
No 352
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=21.73 E-value=7.3e+02 Score=23.89 Aligned_cols=125 Identities=12% Similarity=0.116 Sum_probs=68.0
Q ss_pred cEEEEEeC-cccHHHHHHHHHHHHhCCCcEEEecCCC--CcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCC
Q 021654 13 LKIIAGAD-SFGAELKDALVSHLRSLNIDVEDLGTSD--YYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKN 89 (309)
Q Consensus 13 mki~i~~D-~~g~~lk~~l~~~l~~~g~ev~d~G~~~--y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~ 89 (309)
-|++|.-| ..|+..-+.+.+.+++.|.+|...-... -.||...+ +.+.+ ...++-|+-|-+ -......+..
T Consensus 125 k~vaiiYd~~~~~~~lq~l~~~~~~~g~~v~~~~~~~~~~~d~~~~L-~~ik~----~~~~~iil~~~~-~~~~~il~qa 198 (371)
T cd06388 125 NRFVFLYDTDRGYSILQAIMEKAGQNGWQVSAICVENFNDASYRRLL-EDLDR----RQEKKFVIDCEI-ERLQNILEQI 198 (371)
T ss_pred eEEEEEecCCccHHHHHHHHHhhHhcCCeeeeEEeccCCcHHHHHHH-HHhcc----cccEEEEEECCH-HHHHHHHHHH
Confidence 46777766 5678878889999999998887532221 12453333 33443 344555555554 4444444433
Q ss_pred Cc----------eEEEEeCCHHHHHHhH-hhcCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCCC
Q 021654 90 PG----------VFATTCLTPADALNTR-SINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPAS 146 (309)
Q Consensus 90 ~g----------iraa~~~~~~~A~~~r-~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~ 146 (309)
+- |...+ +..+..+-. +++..||..+=.--......+++++.|-+ .|...||..
T Consensus 199 ~~~gm~~~~y~~il~~~--~~~~~~l~~~~~g~~nitg~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~ 263 (371)
T cd06388 199 VSVGKHVKGYHYIIANL--GFKDISLERFMHGGANVTGFQLVDFNTPMVTKLMQRWKK-LDQREYPGS 263 (371)
T ss_pred HhcCccccceEEEEccC--ccccccHHHHhccCCceEEEEeecCCChhHHHHHHHHHh-cCccccCCC
Confidence 21 22222 222222322 47888976442222234667889999944 365566553
No 353
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=21.71 E-value=2.9e+02 Score=25.49 Aligned_cols=60 Identities=18% Similarity=0.131 Sum_probs=36.7
Q ss_pred EEEEEe--CcccHHHHHHHHHHHHhCCCcEEEecCCCC----cchhHHHHHHhhcCCCCCCCceEEEEecCc
Q 021654 14 KIIAGA--DSFGAELKDALVSHLRSLNIDVEDLGTSDY----YSIGAEVGRRVSSSDSSDTTTRGLVACGTG 79 (309)
Q Consensus 14 ki~i~~--D~~g~~lk~~l~~~l~~~g~ev~d~G~~~y----~~~a~~va~~v~~~~~~~~~~~gi~~CgtG 79 (309)
||++.. |..|..+.+.+++.+++.|.+|.+.-...- .++.. +.+.+.+ ... +.|++++++
T Consensus 162 ~v~~l~~~~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~d~~~-~l~~l~~----~~~-~vvv~~~~~ 227 (348)
T cd06350 162 WVGLVYSDDDYGRSGLSDLEEELEKNGICIAFVEAIPPSSTEEDIKR-ILKKLKS----STA-RVIVVFGDE 227 (348)
T ss_pred EEEEEEecchhHHHHHHHHHHHHHHCCCcEEEEEEccCCCcHHHHHH-HHHHHHh----CCC-cEEEEEeCc
Confidence 455443 334778899999999999999986433221 24433 3344444 222 677777666
No 354
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=21.56 E-value=1.4e+02 Score=28.52 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=24.0
Q ss_pred CCcEEEEEeCccc---HHHHHHHHHHHHhCCCcEE
Q 021654 11 HPLKIIAGADSFG---AELKDALVSHLRSLNIDVE 42 (309)
Q Consensus 11 ~~mki~i~~D~~g---~~lk~~l~~~l~~~g~ev~ 42 (309)
+.|||.|-++..| ..--++|++.|+++|++|+
T Consensus 3 ~~~rili~t~~~G~GH~~~a~al~~~l~~~g~~~~ 37 (380)
T PRK13609 3 KNPKVLILTAHYGNGHVQVAKTLEQTFRQKGIKDV 37 (380)
T ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHHHhcCCCcE
Confidence 4579999999888 2244678888888998643
No 355
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=21.43 E-value=4.2e+02 Score=26.17 Aligned_cols=67 Identities=16% Similarity=0.157 Sum_probs=40.7
Q ss_pred CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-C--------CcchhHHHHHHhhcCCC------CCCCceEEEE
Q 021654 11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-D--------YYSIGAEVGRRVSSSDS------SDTTTRGLVA 75 (309)
Q Consensus 11 ~~mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~-~--------y~~~a~~va~~v~~~~~------~~~~~~gi~~ 75 (309)
.++||++-+-|... ...+.+.|++.|.+|+-+-.. | .++.-..+.+.|.+... ++.+||-+++
T Consensus 168 ~~lkVvvD~~nG~~--~~~~~~ll~~lg~~v~~in~~~dg~~~~~~~~~~~~~~l~~~v~~~~adlGia~DgDgDR~~~v 245 (434)
T cd05802 168 SGLKIVLDCANGAA--YKVAPEVFRELGAEVIVINNAPDGLNINVNCGSTHPESLQKAVLENGADLGIAFDGDADRVIAV 245 (434)
T ss_pred CCCEEEEECCCchH--HHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEEEcCCCceEEEE
Confidence 46899999888543 456777788889998865332 1 12333456667765211 4555555555
Q ss_pred ecCc
Q 021654 76 CGTG 79 (309)
Q Consensus 76 CgtG 79 (309)
+..|
T Consensus 246 d~~G 249 (434)
T cd05802 246 DEKG 249 (434)
T ss_pred CCCC
Confidence 5555
No 356
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=21.35 E-value=2.2e+02 Score=26.14 Aligned_cols=74 Identities=8% Similarity=0.042 Sum_probs=44.5
Q ss_pred hhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCCCce--EEEEeCCHHHHHHhHh-hcCceEeEecccc-------
Q 021654 52 IGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKNPGV--FATTCLTPADALNTRS-INNCNVLAVSGMS------- 121 (309)
Q Consensus 52 ~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~~gi--raa~~~~~~~A~~~r~-hN~aNvl~lg~~~------- 121 (309)
+|.+++..|.. | --|++ ++|-=....|.-+|.. .-.++++...|..... .|+.||+++||.+
T Consensus 81 IA~~Aa~~I~~----g---~tIfl-d~GtT~~~la~~L~~~~~ltVvTnsl~ia~~l~~~~~~~~v~l~GG~~~~~~~~~ 152 (256)
T PRK10434 81 IAEAAVSLIHD----G---DSIIL-DAGSTVLQMVPLLSRFNNITVMTNSLHIVNALSELDNEQTILMPGGTFRKKSASF 152 (256)
T ss_pred HHHHHHhhCCC----C---CEEEE-cCcHHHHHHHHHhccCCCeEEEECCHHHHHHHhhCCCCCEEEEECCEEeCCCCeE
Confidence 66666666654 2 23444 4444444556655543 4566777777765555 4557999999984
Q ss_pred CCHHHHHHHHHHH
Q 021654 122 TSKESAVEILDTW 134 (309)
Q Consensus 122 ~~~~~a~~i~~~~ 134 (309)
+|+.. .+.++.|
T Consensus 153 ~G~~a-~~~l~~~ 164 (256)
T PRK10434 153 HGQLA-ENAFEHF 164 (256)
T ss_pred ECHHH-HHHHHhC
Confidence 45544 4555554
No 357
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=21.29 E-value=3.8e+02 Score=24.51 Aligned_cols=63 Identities=21% Similarity=0.178 Sum_probs=40.0
Q ss_pred EEEEE--eCcccHHHHHHHHHHHHhCCCcEEEe---cCCCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhh
Q 021654 14 KIIAG--ADSFGAELKDALVSHLRSLNIDVEDL---GTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVA 83 (309)
Q Consensus 14 ki~i~--~D~~g~~lk~~l~~~l~~~g~ev~d~---G~~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~ 83 (309)
||+|. .|-.|..+.+.+.+.|++.|.+|++. ... -.++...+.+.... ..|. |++|+++.-+.
T Consensus 137 ~v~iv~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~-~~d~~~~~~~l~~~-----~~d~-v~~~~~~~~~~ 204 (343)
T PF13458_consen 137 KVAIVYPDDPYGRSLAEAFRKALEAAGGKVVGEIRYPPG-DTDFSALVQQLKSA-----GPDV-VVLAGDPADAA 204 (343)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEE-TT-SSHHHHHHHHHHHT-----TTSE-EEEESTHHHHH
T ss_pred EEEEEecCchhhhHHHHHHHHHHhhcCceeccceecccc-cccchHHHHHHhhc-----CCCE-EEEeccchhHH
Confidence 44444 45577789999999999999998633 322 25666555554443 4454 77777665443
No 358
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=21.28 E-value=3.3e+02 Score=25.02 Aligned_cols=62 Identities=10% Similarity=-0.010 Sum_probs=39.5
Q ss_pred hhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCCCce--EEEEeCCHHHHHHhHhhcCceEeEecccc
Q 021654 52 IGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKNPGV--FATTCLTPADALNTRSINNCNVLAVSGMS 121 (309)
Q Consensus 52 ~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~~gi--raa~~~~~~~A~~~r~hN~aNvl~lg~~~ 121 (309)
+|.+++..|.. | --|++.++- =+...|..+|+. .-.+.++...|.....+++.+|+++||.+
T Consensus 81 IA~~Aa~~I~~----g---~tIflD~Gt-T~~~la~~L~~~~~ltVvTNsl~ia~~l~~~~~~~villGG~~ 144 (252)
T PRK10906 81 IARKVASQIPN----G---ATLFIDIGT-TPEAVAHALLNHSNLRIVTNNLNVANTLMAKEDFRIILAGGEL 144 (252)
T ss_pred HHHHHHhhCCC----C---CEEEEcCcH-HHHHHHHHhcCCCCcEEEECcHHHHHHHhhCCCCEEEEECCEE
Confidence 66666776665 2 235454333 334455555442 34556667778777788999999999984
No 359
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=21.16 E-value=3.8e+02 Score=26.71 Aligned_cols=32 Identities=25% Similarity=0.210 Sum_probs=24.1
Q ss_pred CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEe
Q 021654 11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDL 44 (309)
Q Consensus 11 ~~mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~ 44 (309)
+++||++-+-|.. -...+...|++.|.+|+-+
T Consensus 163 ~~lkVvvd~~~Ga--~~~~~~~ll~~lg~~vv~~ 194 (445)
T PRK09542 163 RPLKVAVDAGNGM--GGHTVPAVLGGLPITLLPL 194 (445)
T ss_pred CCCEEEEECCCCc--hhHHHHHHHHhCCCEEEEE
Confidence 4689999988854 3456667778889999855
No 360
>PRK14825 putative deoxyribonucleotide triphosphate pyrophosphatase; Provisional
Probab=21.08 E-value=2.4e+02 Score=25.25 Aligned_cols=76 Identities=11% Similarity=0.192 Sum_probs=50.2
Q ss_pred EEEEEeCcccHHHHHHHHHHHHhCCCcEEEecC-------CCCcchhHHHHHHhhcCCCCCCC-ceEEEEecCchhhhhh
Q 021654 14 KIIAGADSFGAELKDALVSHLRSLNIDVEDLGT-------SDYYSIGAEVGRRVSSSDSSDTT-TRGLVACGTGVGVAIF 85 (309)
Q Consensus 14 ki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~-------~~y~~~a~~va~~v~~~~~~~~~-~~gi~~CgtG~G~~ia 85 (309)
||++++-..+ .+ +++++.|...+++|..... .+|.+.|..=|+.+.+ --. ..-++..-||+=+. |
T Consensus 3 ~i~~aT~N~~-K~-~E~~~il~~~~~~i~~~~~~~~~E~~~tf~enA~~KA~~~~~----~~~~~~pvlaDDSGL~vd-A 75 (199)
T PRK14825 3 TLFFATTNIN-KI-NEVKQILDIPNIKIEIPQNFDIKETGKTFKENSLLKAKALFE----ILNNKQPVFSEDSGLCIE-A 75 (199)
T ss_pred eEEEECCChh-HH-HHHHHHHhhcCceEeecccCCCCCCCCCHHHHHHHHHHHHHH----HHCCCCcEEEecCeEEEh-h
Confidence 7899888766 33 4567777766776653322 1466777777777665 111 23588899987665 6
Q ss_pred hcCCCceEEEE
Q 021654 86 ANKNPGVFATT 96 (309)
Q Consensus 86 aNK~~giraa~ 96 (309)
.|-+|||+.+.
T Consensus 76 L~G~PGvysar 86 (199)
T PRK14825 76 LNLEPGIYSKR 86 (199)
T ss_pred hCCCCceeeHh
Confidence 79999998643
No 361
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=20.96 E-value=3.7e+02 Score=25.28 Aligned_cols=65 Identities=11% Similarity=0.034 Sum_probs=42.5
Q ss_pred CcEEEEEeC--cccHHHHHHHHHHHHhCCCcEEEecCC--CCcchhHHHHHHhhcCCCCCCCceEEEEecCchhh
Q 021654 12 PLKIIAGAD--SFGAELKDALVSHLRSLNIDVEDLGTS--DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGV 82 (309)
Q Consensus 12 ~mki~i~~D--~~g~~lk~~l~~~l~~~g~ev~d~G~~--~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~ 82 (309)
..||++-.+ -.|..+.+.+++.|++.|.+|+..-.. .-.|+...+.+...+ +. | .|+++++|...
T Consensus 133 ~k~vaii~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~l~~~----~p-d-~v~~~~~~~~~ 201 (348)
T cd06355 133 GKRFYLVGSDYVYPRTANKILKAQLESLGGEVVGEEYLPLGHTDFQSIINKIKAA----KP-D-VVVSTVNGDSN 201 (348)
T ss_pred CCeEEEECCcchHHHHHHHHHHHHHHHcCCeEEeeEEecCChhhHHHHHHHHHHh----CC-C-EEEEeccCCch
Confidence 357777643 346789999999999999998853221 124566666655554 33 3 67777777543
No 362
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=20.93 E-value=3.6e+02 Score=24.56 Aligned_cols=74 Identities=8% Similarity=0.056 Sum_probs=45.9
Q ss_pred hhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCCCce-EEEEeCCHHHHHHhHhhcCceEeEeccc-------cCC
Q 021654 52 IGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKNPGV-FATTCLTPADALNTRSINNCNVLAVSGM-------STS 123 (309)
Q Consensus 52 ~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~~gi-raa~~~~~~~A~~~r~hN~aNvl~lg~~-------~~~ 123 (309)
+|.++++.|.. | +.-.+=+|| =+...|--+|.. .-.++++...|...+.++|.+++++||. ++|
T Consensus 83 IA~~Aa~lI~~----g--d~Ifld~Gt--T~~~l~~~L~~~~ltVvTNs~~ia~~l~~~~~~~vil~GG~~~~~~~~~~G 154 (240)
T PRK10411 83 IAREALAWIEE----G--MVIALDASS--TCWYLARQLPDINIQVFTNSHPICQELGKRERIQLISSGGTLERKYGCYVN 154 (240)
T ss_pred HHHHHHHhCCC----C--CEEEEcCcH--HHHHHHHhhCCCCeEEEeCCHHHHHHHhcCCCCEEEEECCEEeCCCCceEC
Confidence 67777777765 2 223333333 333344433321 5667788888888888999999999997 456
Q ss_pred HHHHHHHHHHH
Q 021654 124 KESAVEILDTW 134 (309)
Q Consensus 124 ~~~a~~i~~~~ 134 (309)
+. +.+.++.|
T Consensus 155 ~~-a~~~l~~~ 164 (240)
T PRK10411 155 PS-LISQLKSL 164 (240)
T ss_pred HH-HHHHHHhc
Confidence 44 45555554
No 363
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2.7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
Probab=20.92 E-value=1.3e+02 Score=27.45 Aligned_cols=36 Identities=22% Similarity=0.298 Sum_probs=26.5
Q ss_pred EEEEEeCcccH-------HHHHHHHHHHHhCCCcEEEecCCCC
Q 021654 14 KIIAGADSFGA-------ELKDALVSHLRSLNIDVEDLGTSDY 49 (309)
Q Consensus 14 ki~i~~D~~g~-------~lk~~l~~~l~~~g~ev~d~G~~~y 49 (309)
+.+||-||+|. +.++.+.++..+.|++++-|...-|
T Consensus 118 h~IvGrdhAg~g~~Y~~~~a~~i~~~~~~el~I~~v~~~~~~Y 160 (215)
T PF01747_consen 118 HFIVGRDHAGVGDFYDPYEAQEIFDEYAGELGIEPVPFPEMVY 160 (215)
T ss_dssp EEEE-TTTT-SCBSS-TTHHHHHHHHHHHHCTSEEEE---EEE
T ss_pred eEEeCCcCCCccccCCccHHHHHHHcCcccCCceEEecceEEE
Confidence 68999999996 6888888899999999999876433
No 364
>PRK02491 putative deoxyribonucleotide triphosphate pyrophosphatase/unknown domain fusion protein; Reviewed
Probab=20.90 E-value=1.6e+02 Score=28.71 Aligned_cols=78 Identities=18% Similarity=0.222 Sum_probs=52.1
Q ss_pred CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecC-----------CCCcchhHHHHHHhhcCCCCCCCceEEEEecCc
Q 021654 11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGT-----------SDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTG 79 (309)
Q Consensus 11 ~~mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~-----------~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG 79 (309)
-.+||++++-..+ .+ +++++.|...|++|+.+.. .+|.+.|..=|+.+.+ ....-++..-||
T Consensus 126 ~~~kIv~AT~N~~-K~-~E~~~iL~~~~iev~~l~~~~~~~Ei~Etg~Tf~ENA~~KA~~aa~-----~~g~pvLADDSG 198 (328)
T PRK02491 126 FGDTILIATRNEG-KT-KEFRKLFGKLGYKVENLNDYPDLPEVAETGMTFEENARLKAETISR-----LTGKMVLADDSG 198 (328)
T ss_pred CCCeEEEEcCChh-HH-HHHHHHHhhcCcEEEehhhcCCCCCcCCCCCCHHHHHHHHHHHHHH-----HHCCCEEEEccE
Confidence 3478999998876 33 5677778878888875441 1456667666666654 112357778887
Q ss_pred hhhhhhhcCCCceEEEE
Q 021654 80 VGVAIFANKNPGVFATT 96 (309)
Q Consensus 80 ~G~~iaaNK~~giraa~ 96 (309)
+=+. |.|..|||+.|.
T Consensus 199 L~Vd-AL~G~PGvySAR 214 (328)
T PRK02491 199 LKVD-ALGGLPGVWSAR 214 (328)
T ss_pred EEEc-ccCCCCcccchh
Confidence 6443 679999996553
No 365
>PRK09774 fec operon regulator FecR; Reviewed
Probab=20.73 E-value=3.9e+02 Score=25.37 Aligned_cols=31 Identities=16% Similarity=0.078 Sum_probs=15.8
Q ss_pred EEEEEcCCC-cCCCeecCCceEEEEEecEEEE
Q 021654 216 AIVRFKAGS-VEPAHHHTFGHDLVVLQGKKSV 246 (309)
Q Consensus 216 ~~~~l~pG~-~~p~H~H~~~e~vyVlsG~l~v 246 (309)
.+|.+.+.. ..|+..|...-.+-|+-....+
T Consensus 155 a~F~Va~d~~~rPF~V~t~~~~v~vlGT~F~V 186 (319)
T PRK09774 155 IAITTAKDALQRPFRVLTRQGQLTALGTEFTV 186 (319)
T ss_pred EEEEEcCCCCCCCEEEEeCCcEEEEeeeEEEE
Confidence 445555554 3555555544445555444444
No 366
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=20.71 E-value=3.4e+02 Score=25.71 Aligned_cols=63 Identities=11% Similarity=0.029 Sum_probs=40.9
Q ss_pred cEEEEEe-Cc-ccHHHHHHHHHHHHhCCCcEEEecCC--CCcchhHHHHHHhhcCCCCCCCceEEEEecCchh
Q 021654 13 LKIIAGA-DS-FGAELKDALVSHLRSLNIDVEDLGTS--DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVG 81 (309)
Q Consensus 13 mki~i~~-D~-~g~~lk~~l~~~l~~~g~ev~d~G~~--~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G 81 (309)
.|+++-. |+ .|....+.+.+.|++.|.+|+..-.. .-.||...+.+..++ + .| .|+++++|-.
T Consensus 135 k~v~~l~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~s~~v~~l~~~----~-pD-av~~~~~~~~ 201 (359)
T TIGR03407 135 KRFFLLGSDYVFPRTANKIIKAYLKSLGGTVVGEDYTPLGHTDFQTIINKIKAF----K-PD-VVFNTLNGDS 201 (359)
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHcCCEEEeeEEecCChHhHHHHHHHHHHh----C-CC-EEEEeccCCC
Confidence 4566544 43 36668888999999999998754332 234677666666554 4 34 6677777744
No 367
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=20.64 E-value=83 Score=23.25 Aligned_cols=17 Identities=12% Similarity=0.321 Sum_probs=14.4
Q ss_pred HHHHHHHHhCCCcEEEe
Q 021654 28 DALVSHLRSLNIDVEDL 44 (309)
Q Consensus 28 ~~l~~~l~~~g~ev~d~ 44 (309)
+.|++.|+++||+|...
T Consensus 2 ~~I~~~L~~~G~~v~~i 18 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNI 18 (68)
T ss_pred HHHHHHHHHcCCceEEE
Confidence 57888999999999865
No 368
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=20.56 E-value=1.3e+02 Score=23.63 Aligned_cols=26 Identities=15% Similarity=0.104 Sum_probs=21.4
Q ss_pred cHHHHHHHHHHHHhCCCcEEEecCCC
Q 021654 23 GAELKDALVSHLRSLNIDVEDLGTSD 48 (309)
Q Consensus 23 g~~lk~~l~~~l~~~g~ev~d~G~~~ 48 (309)
|.-|-..++++..+.|+++.|||...
T Consensus 112 ~~~l~~~~i~~a~~~g~~~~d~g~g~ 137 (142)
T PF13480_consen 112 GRLLLWEAIRWAIERGLRYFDFGGGN 137 (142)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 44477788899999999999999754
No 369
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=20.49 E-value=3.5e+02 Score=25.91 Aligned_cols=61 Identities=13% Similarity=0.151 Sum_probs=36.9
Q ss_pred cEEEEEeCcccH-HHHHHHHHHHHhCCCcEEEec---CCCCcchhHHHHHHhhcCCCCCCCceEEEEec
Q 021654 13 LKIIAGADSFGA-ELKDALVSHLRSLNIDVEDLG---TSDYYSIGAEVGRRVSSSDSSDTTTRGLVACG 77 (309)
Q Consensus 13 mki~i~~D~~g~-~lk~~l~~~l~~~g~ev~d~G---~~~y~~~a~~va~~v~~~~~~~~~~~gi~~Cg 77 (309)
.|+.|-+|...+ ...+.|.+.|++.|.++..|. .+.-.+...++++...+ ..+|.-|-|-|
T Consensus 23 ~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~----~~~d~iiavGG 87 (345)
T cd08171 23 KKVVVIGGKTALAAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAV----QEADMIFAVGG 87 (345)
T ss_pred CEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhh----cCCCEEEEeCC
Confidence 478888986443 356789999999998876543 22212233455555444 45565554443
No 370
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=20.47 E-value=1.2e+02 Score=25.52 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=15.4
Q ss_pred EEEecCCcEEEECCCCeEEEEEcC
Q 021654 254 RFDLTVGDYLFTPAGDVHRVKYYE 277 (309)
Q Consensus 254 ~~~L~pGD~v~IP~g~~H~~~n~g 277 (309)
...|.||+++.+-|+.+|+.....
T Consensus 114 ~i~l~~g~f~iffP~d~H~p~~~~ 137 (153)
T PF04074_consen 114 FITLKPGDFAIFFPEDAHRPGCAV 137 (153)
T ss_dssp EEEE-TTEEEEE-TT--EEEEE-B
T ss_pred EEEEcCCEEEEECCCccccccccC
Confidence 457899999999999999966443
No 371
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=20.43 E-value=3.9e+02 Score=26.52 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=26.1
Q ss_pred CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecC
Q 021654 11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGT 46 (309)
Q Consensus 11 ~~mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~ 46 (309)
+++||++-+-|.. -...+.+.|++.|.+|+-+..
T Consensus 162 ~~lkVvvd~~~G~--~~~~~~~ll~~lG~~v~~i~~ 195 (443)
T cd03089 162 RPLKVVVDAGNGA--AGPIAPQLLEALGCEVIPLFC 195 (443)
T ss_pred CCCeEEEECCCCc--hHHHHHHHHHHCCCEEEEecC
Confidence 5789999988854 356778888889999886643
No 372
>PRK14318 glmM phosphoglucosamine mutase; Provisional
Probab=20.35 E-value=4.6e+02 Score=26.12 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=38.6
Q ss_pred CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-C--C------cchhHHHHHHhhcCCCCCCCceEEEEecCc
Q 021654 11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-D--Y------YSIGAEVGRRVSSSDSSDTTTRGLVACGTG 79 (309)
Q Consensus 11 ~~mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~-~--y------~~~a~~va~~v~~~~~~~~~~~gi~~CgtG 79 (309)
..+||++-+-|.. -...+.+.|++.|.+|+-+... | + ++.-..+.+.|.+ ..+|.||.+.|-|
T Consensus 174 ~~~kVvvD~~nG~--~~~~~~~ll~~lG~~v~~in~~~dg~~~~~~~~~~~l~~l~~~v~~----~~adlGia~DgD~ 245 (448)
T PRK14318 174 DGLKVVVDCAHGA--ASGVAPEAYRAAGADVIAINADPDGLNINDGCGSTHLEQLQAAVVA----HGADLGLAHDGDA 245 (448)
T ss_pred CCCEEEEECCCch--HHHHHHHHHHHcCCEEEEeccCCCCCCCCCCCCCCCHHHHHHHHHh----cCCCEEEEecCCC
Confidence 4689999888854 3456667778889998866432 1 1 1223456666765 4455555555544
No 373
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=20.22 E-value=2e+02 Score=25.99 Aligned_cols=38 Identities=21% Similarity=0.317 Sum_probs=27.7
Q ss_pred CCeEEEecCCcEEEECCCCeEEEEEcCC--ceEEEEEcCc
Q 021654 251 KGERFDLTVGDYLFTPAGDVHRVKYYEE--TEFFIKWDGR 288 (309)
Q Consensus 251 ~~~~~~L~pGD~v~IP~g~~H~~~n~gd--~~~~i~~~~~ 288 (309)
++....|++||.+.+|+...|.+.-.+. ....+.|...
T Consensus 142 g~h~VklPAGdLVlypStSlH~VtPVTRg~R~asffW~qs 181 (229)
T COG3128 142 GNHRVKLPAGDLVLYPSTSLHEVTPVTRGERFASFFWIQS 181 (229)
T ss_pred cceEEeccCCCEEEcccccceeccccccCceEEEeeehHH
Confidence 3567899999999999999999866553 2233445443
No 374
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=20.20 E-value=2.7e+02 Score=23.32 Aligned_cols=65 Identities=17% Similarity=0.161 Sum_probs=37.4
Q ss_pred EEEcCCCcCCCeecCCceEEEEEecEEEEEEeeC-CeE---EEecCCcEEEECC-----CCeEEEEEcCCceEE
Q 021654 218 VRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTK-GER---FDLTVGDYLFTPA-----GDVHRVKYYEETEFF 282 (309)
Q Consensus 218 ~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~-~~~---~~L~pGD~v~IP~-----g~~H~~~n~gd~~~~ 282 (309)
..+++|...-..--+...+++|++|.+.+..... |+. ..+.|||++=..+ ...+.....++..++
T Consensus 26 ~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~~~~~~~~~~a~~~~~~~ 99 (214)
T COG0664 26 RKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLGGDPRSASAVALTDVEVL 99 (214)
T ss_pred EeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhcCCCccceEEEcceEEEE
Confidence 3455554333333344447899999999965433 333 3467999775553 234456666664443
No 375
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=20.13 E-value=2.1e+02 Score=21.76 Aligned_cols=32 Identities=9% Similarity=0.222 Sum_probs=26.3
Q ss_pred EEEEEeCcccHHHHHHHHHHHHhCCCcEEEecC
Q 021654 14 KIIAGADSFGAELKDALVSHLRSLNIDVEDLGT 46 (309)
Q Consensus 14 ki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~ 46 (309)
-|+|++|-.- .+++.+...-+..+..++.+++
T Consensus 30 lViiA~D~~~-~~~~~i~~~c~~~~Vp~~~~~s 61 (82)
T PRK13602 30 EVVVAEDADP-RLTEKVEALANEKGVPVSKVDS 61 (82)
T ss_pred EEEEECCCCH-HHHHHHHHHHHHcCCCEEEECC
Confidence 3677777665 7999999999999999998773
No 376
>cd03088 ManB ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In Mycobacterium tuberculosis, the causative agent of tuberculosis, PMM is involved in the biosynthesis of mannosylated lipoglycans that participate in the association of mycobacteria with host macrophage phagocytic receptors. ManB belongs to the the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrall
Probab=20.08 E-value=4.1e+02 Score=26.54 Aligned_cols=69 Identities=22% Similarity=0.121 Sum_probs=43.1
Q ss_pred CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-CC---------cchhHHHHHHhhcCCCCCCCceEEEEecCch
Q 021654 11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-DY---------YSIGAEVGRRVSSSDSSDTTTRGLVACGTGV 80 (309)
Q Consensus 11 ~~mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~-~y---------~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~ 80 (309)
+.+||++-+-|.. -...+.+.|++.|.+|+-+-.. ++ +..-..+.+.|.+ ..+|.||.+.|-|=
T Consensus 164 ~~lkIvvD~~~G~--~~~~~~~ll~~lG~~v~~l~~~~~~~~~~~~~~~~~~l~~l~~~v~~----~~adlGia~D~DgD 237 (459)
T cd03088 164 KGLRIGVYQHSSV--GRDLLVRILEALGAEVVPLGRSDTFIPVDTEAVRPEDRALAAAWAAE----HGLDAIVSTDGDGD 237 (459)
T ss_pred CCCEEEEECCCCC--HHHHHHHHHHHcCCeEEEeCCCCCCCCCCCCcCCHHHHHHHHHHHHh----cCCCEEEEeCCCCC
Confidence 4689999998854 2456777778889998865321 11 1233456666765 55667776666654
Q ss_pred hhhhh
Q 021654 81 GVAIF 85 (309)
Q Consensus 81 G~~ia 85 (309)
=+.++
T Consensus 238 R~~vv 242 (459)
T cd03088 238 RPLVA 242 (459)
T ss_pred CceeE
Confidence 44433
Done!