Query 021656
Match_columns 309
No_of_seqs 331 out of 1820
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 07:21:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021656.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021656hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 3.2E-17 1.1E-21 126.7 5.3 77 155-231 11-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 2E-16 6.7E-21 117.5 3.9 71 162-232 2-73 (75)
3 2ect_A Ring finger protein 126 99.5 1.3E-14 4.4E-19 108.2 6.0 58 179-236 12-69 (78)
4 1iym_A EL5; ring-H2 finger, ub 99.5 1E-14 3.5E-19 101.5 3.7 51 180-230 3-54 (55)
5 2kiz_A E3 ubiquitin-protein li 99.5 1.3E-14 4.5E-19 105.7 3.5 55 180-234 12-66 (69)
6 2ep4_A Ring finger protein 24; 99.5 2.7E-14 9.3E-19 105.4 4.0 54 180-233 13-66 (74)
7 3dpl_R Ring-box protein 1; ubi 99.4 2.7E-13 9.2E-18 107.7 3.7 50 181-230 36-100 (106)
8 2ecm_A Ring finger and CHY zin 99.4 2.9E-13 9.9E-18 93.9 3.2 50 181-230 4-54 (55)
9 1v87_A Deltex protein 2; ring- 99.3 4E-13 1.4E-17 107.2 4.3 52 181-232 24-95 (114)
10 2ecl_A Ring-box protein 2; RNF 99.3 2.1E-13 7.2E-18 102.9 1.6 50 182-231 15-76 (81)
11 3ng2_A RNF4, snurf, ring finge 99.3 4.5E-13 1.5E-17 97.7 2.3 54 180-233 8-65 (71)
12 2ea6_A Ring finger protein 4; 99.3 3.8E-13 1.3E-17 97.4 1.8 52 180-231 13-68 (69)
13 2ecn_A Ring finger protein 141 99.3 1.2E-12 4.1E-17 95.4 2.7 51 180-234 13-63 (70)
14 2xeu_A Ring finger protein 4; 99.3 8.3E-13 2.8E-17 94.1 1.7 52 182-233 3-58 (64)
15 4a0k_B E3 ubiquitin-protein li 99.3 4.8E-13 1.7E-17 108.0 -0.3 51 181-231 47-112 (117)
16 2d8s_A Cellular modulator of i 99.2 2.9E-12 1E-16 96.6 3.8 53 181-234 14-73 (80)
17 1chc_A Equine herpes virus-1 r 99.2 2.6E-12 9.1E-17 92.9 3.3 49 181-231 4-52 (68)
18 2djb_A Polycomb group ring fin 99.2 2.7E-12 9.2E-17 94.3 3.2 55 179-235 12-66 (72)
19 2d8t_A Dactylidin, ring finger 99.2 3E-12 1E-16 93.8 3.0 50 180-232 13-62 (71)
20 2ct2_A Tripartite motif protei 99.2 5.1E-12 1.8E-16 95.8 2.9 55 178-232 11-69 (88)
21 2yur_A Retinoblastoma-binding 99.2 1E-11 3.4E-16 91.8 3.9 53 179-234 12-67 (74)
22 2ysl_A Tripartite motif-contai 99.2 1.3E-11 4.5E-16 90.4 3.4 52 179-233 17-71 (73)
23 4ayc_A E3 ubiquitin-protein li 99.1 8.3E-12 2.8E-16 103.3 1.7 50 180-232 51-100 (138)
24 2ecy_A TNF receptor-associated 99.1 1.1E-11 3.9E-16 89.3 1.9 50 180-232 13-63 (66)
25 2csy_A Zinc finger protein 183 99.1 1.6E-11 5.5E-16 92.0 2.5 48 180-230 13-60 (81)
26 2egp_A Tripartite motif-contai 99.1 1.6E-11 5.4E-16 91.2 1.7 51 179-232 9-66 (79)
27 1t1h_A Gspef-atpub14, armadill 99.1 2.7E-11 9.2E-16 90.0 2.9 51 179-232 5-56 (78)
28 3lrq_A E3 ubiquitin-protein li 99.1 5.9E-12 2E-16 98.6 -1.2 52 179-233 19-72 (100)
29 2ct0_A Non-SMC element 1 homol 99.1 3.7E-11 1.3E-15 89.1 2.9 53 181-235 14-68 (74)
30 2ecv_A Tripartite motif-contai 99.1 5.5E-11 1.9E-15 89.1 3.4 53 179-234 16-74 (85)
31 2ckl_A Polycomb group ring fin 99.1 3.4E-11 1.2E-15 95.3 2.3 56 175-232 8-63 (108)
32 2ecw_A Tripartite motif-contai 99.1 3.9E-11 1.3E-15 89.9 2.3 52 179-233 16-73 (85)
33 4ap4_A E3 ubiquitin ligase RNF 99.1 4.2E-11 1.5E-15 97.0 2.3 54 181-234 6-63 (133)
34 2ysj_A Tripartite motif-contai 99.0 7.7E-11 2.6E-15 84.0 2.5 44 179-225 17-63 (63)
35 2y43_A E3 ubiquitin-protein li 99.0 3.8E-11 1.3E-15 93.4 0.7 49 180-231 20-69 (99)
36 1z6u_A NP95-like ring finger p 99.0 3.3E-11 1.1E-15 101.3 -0.3 51 179-232 75-126 (150)
37 2ckl_B Ubiquitin ligase protei 99.0 6.7E-11 2.3E-15 100.5 1.0 52 178-231 50-102 (165)
38 3ztg_A E3 ubiquitin-protein li 99.0 1.3E-10 4.5E-15 89.0 2.5 49 179-230 10-61 (92)
39 2ecj_A Tripartite motif-contai 99.0 1E-10 3.5E-15 81.6 1.5 44 179-225 12-58 (58)
40 3fl2_A E3 ubiquitin-protein li 99.0 1.2E-10 4E-15 94.4 1.9 49 180-231 50-99 (124)
41 1g25_A CDK-activating kinase a 99.0 1.7E-10 5.7E-15 82.8 2.5 52 182-233 3-57 (65)
42 4ap4_A E3 ubiquitin ligase RNF 98.9 1.3E-10 4.5E-15 94.1 1.4 52 181-232 71-126 (133)
43 1bor_A Transcription factor PM 98.9 4.2E-10 1.4E-14 78.6 3.2 47 181-233 5-51 (56)
44 3l11_A E3 ubiquitin-protein li 98.9 1.7E-10 5.9E-15 92.1 1.2 49 180-231 13-62 (115)
45 1jm7_A BRCA1, breast cancer ty 98.9 1.8E-10 6.1E-15 91.2 1.2 50 181-233 20-72 (112)
46 3knv_A TNF receptor-associated 98.9 2.2E-10 7.7E-15 95.2 0.8 52 178-232 27-79 (141)
47 3hct_A TNF receptor-associated 98.9 3.7E-10 1.2E-14 90.8 1.1 51 179-232 15-66 (118)
48 1jm7_B BARD1, BRCA1-associated 98.8 1E-09 3.5E-14 88.0 2.6 49 180-233 20-69 (117)
49 2y1n_A E3 ubiquitin-protein li 98.8 3.9E-10 1.3E-14 107.9 -0.0 48 182-232 332-380 (389)
50 2kre_A Ubiquitin conjugation f 98.8 1.1E-09 3.7E-14 85.8 2.4 51 180-233 27-77 (100)
51 1rmd_A RAG1; V(D)J recombinati 98.8 4.3E-10 1.5E-14 89.9 -0.0 51 180-233 21-72 (116)
52 1e4u_A Transcriptional repress 98.8 2.9E-09 1E-13 79.6 4.0 55 179-234 8-65 (78)
53 2kr4_A Ubiquitin conjugation f 98.8 1.1E-09 3.9E-14 83.1 1.5 50 180-232 12-61 (85)
54 1wgm_A Ubiquitin conjugation f 98.8 2.1E-09 7E-14 84.0 3.0 52 180-234 20-72 (98)
55 4ic3_A E3 ubiquitin-protein li 98.7 8.8E-10 3E-14 81.4 -0.3 44 180-230 22-66 (74)
56 2vje_A E3 ubiquitin-protein li 98.7 3.1E-09 1.1E-13 76.4 2.0 47 181-230 7-56 (64)
57 2vje_B MDM4 protein; proto-onc 98.7 7.7E-09 2.6E-13 74.0 2.3 47 181-230 6-55 (63)
58 3hcs_A TNF receptor-associated 98.5 1.5E-08 5.3E-13 86.1 1.2 51 179-232 15-66 (170)
59 3k1l_B Fancl; UBC, ring, RWD, 98.5 1.5E-08 5E-13 95.0 1.1 52 180-231 306-373 (381)
60 2yu4_A E3 SUMO-protein ligase 98.5 1.4E-08 4.7E-13 78.4 0.1 49 180-231 5-63 (94)
61 2c2l_A CHIP, carboxy terminus 98.5 3E-08 1E-12 89.9 2.2 49 181-232 207-256 (281)
62 2ecg_A Baculoviral IAP repeat- 98.4 3E-08 1E-12 73.2 0.0 44 181-231 24-68 (75)
63 1vyx_A ORF K3, K3RING; zinc-bi 98.4 5.2E-08 1.8E-12 69.1 1.3 48 181-231 5-59 (60)
64 2yho_A E3 ubiquitin-protein li 98.4 5.8E-08 2E-12 72.6 0.5 44 181-231 17-61 (79)
65 2ea5_A Cell growth regulator w 98.4 1.8E-07 6.2E-12 67.9 3.0 45 181-232 14-59 (68)
66 2f42_A STIP1 homology and U-bo 98.4 8.9E-08 3E-12 82.5 1.4 50 180-232 104-154 (179)
67 1wim_A KIAA0161 protein; ring 98.3 1.8E-07 6.3E-12 71.8 1.3 48 181-228 4-61 (94)
68 3t6p_A Baculoviral IAP repeat- 98.2 4.1E-07 1.4E-11 86.1 3.2 44 180-230 293-337 (345)
69 2bay_A PRE-mRNA splicing facto 98.2 2E-07 6.9E-12 66.3 -0.1 49 183-234 4-53 (61)
70 3htk_C E3 SUMO-protein ligase 98.2 4.1E-07 1.4E-11 82.5 1.5 52 180-233 179-234 (267)
71 3vk6_A E3 ubiquitin-protein li 97.8 5.3E-06 1.8E-10 64.2 1.6 45 184-230 3-48 (101)
72 3nw0_A Non-structural maintena 97.7 8.9E-06 3E-10 73.1 2.1 53 182-236 180-234 (238)
73 2ko5_A Ring finger protein Z; 95.6 0.011 3.9E-07 44.9 4.2 54 180-238 26-80 (99)
74 2lri_C Autoimmune regulator; Z 93.0 0.06 2.1E-06 38.3 2.9 45 181-228 11-59 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 92.1 0.052 1.8E-06 41.3 1.6 35 182-216 3-38 (101)
76 2kdx_A HYPA, hydrogenase/ureas 92.0 0.1 3.5E-06 41.3 3.3 33 6-38 72-105 (119)
77 2yql_A PHD finger protein 21A; 90.2 0.14 4.6E-06 35.0 2.1 45 180-227 7-55 (56)
78 1fp0_A KAP-1 corepressor; PHD 90.0 0.37 1.3E-05 36.2 4.5 46 180-228 23-72 (88)
79 1mm2_A MI2-beta; PHD, zinc fin 89.6 0.26 8.8E-06 34.3 3.1 46 181-229 8-57 (61)
80 2l5u_A Chromodomain-helicase-D 89.2 0.19 6.5E-06 35.0 2.2 46 180-228 9-58 (61)
81 1xwh_A Autoimmune regulator; P 88.2 0.39 1.3E-05 33.9 3.3 45 181-228 7-55 (66)
82 2puy_A PHD finger protein 21A; 88.0 0.13 4.6E-06 35.5 0.8 47 181-230 4-54 (60)
83 1wil_A KIAA1045 protein; ring 87.9 0.18 6.2E-06 37.5 1.4 32 180-215 13-47 (89)
84 3o36_A Transcription intermedi 87.4 0.32 1.1E-05 41.2 2.9 46 181-229 3-52 (184)
85 3a43_A HYPD, hydrogenase nicke 86.7 0.33 1.1E-05 39.5 2.5 32 6-37 69-121 (139)
86 1f62_A Transcription factor WS 86.3 0.32 1.1E-05 32.3 1.8 44 184-227 2-49 (51)
87 4ayb_P DNA-directed RNA polyme 86.2 0.34 1.2E-05 32.0 1.8 32 6-37 2-37 (48)
88 2k16_A Transcription initiatio 86.2 0.38 1.3E-05 34.6 2.4 49 181-230 17-70 (75)
89 1we9_A PHD finger family prote 85.7 0.46 1.6E-05 33.1 2.5 48 180-227 4-57 (64)
90 2e6r_A Jumonji/ARID domain-con 85.2 0.33 1.1E-05 36.7 1.6 49 181-229 15-67 (92)
91 2ysm_A Myeloid/lymphoid or mix 85.0 0.61 2.1E-05 36.1 3.2 47 180-226 5-55 (111)
92 1wev_A Riken cDNA 1110020M19; 84.3 0.63 2.2E-05 34.8 2.9 51 181-231 15-75 (88)
93 2yt5_A Metal-response element- 84.0 0.46 1.6E-05 33.2 1.9 50 180-229 4-62 (66)
94 3u5n_A E3 ubiquitin-protein li 83.9 0.44 1.5E-05 41.2 2.1 46 181-229 6-55 (207)
95 3shb_A E3 ubiquitin-protein li 79.1 0.88 3E-05 33.2 1.9 25 203-227 47-76 (77)
96 3v43_A Histone acetyltransfera 78.9 1.3 4.6E-05 34.3 3.1 45 183-227 62-111 (112)
97 3lqh_A Histone-lysine N-methyl 78.9 0.96 3.3E-05 38.5 2.4 47 183-229 3-64 (183)
98 2lv9_A Histone-lysine N-methyl 78.8 1.4 4.9E-05 33.5 3.1 44 183-227 29-75 (98)
99 2ro1_A Transcription intermedi 78.7 0.95 3.3E-05 38.6 2.3 44 182-228 2-49 (189)
100 3h0g_L DNA-directed RNA polyme 76.9 1.4 4.7E-05 31.0 2.3 32 6-37 20-52 (63)
101 2e6s_A E3 ubiquitin-protein li 75.3 1.7 5.7E-05 31.7 2.5 44 184-227 28-76 (77)
102 2xb1_A Pygopus homolog 2, B-ce 73.7 1.2 4.2E-05 34.3 1.5 47 183-229 4-62 (105)
103 3asl_A E3 ubiquitin-protein li 73.1 1.7 5.6E-05 31.0 2.0 43 184-227 20-68 (70)
104 2ct7_A Ring finger protein 31; 72.2 2.5 8.5E-05 31.1 2.9 32 6-37 24-57 (86)
105 4fo9_A E3 SUMO-protein ligase 71.0 1.2 4E-05 42.0 1.0 86 142-230 172-265 (360)
106 3i2d_A E3 SUMO-protein ligase 70.8 1.4 4.7E-05 41.6 1.4 47 182-231 249-300 (371)
107 2cu8_A Cysteine-rich protein 2 70.7 3.5 0.00012 29.0 3.3 40 182-231 9-48 (76)
108 1iml_A CRIP, cysteine rich int 70.6 2.8 9.7E-05 29.5 2.8 37 184-230 2-38 (76)
109 2ku3_A Bromodomain-containing 70.5 1.2 4.2E-05 31.9 0.8 49 180-228 14-66 (71)
110 2kwj_A Zinc finger protein DPF 69.9 1.1 3.7E-05 35.0 0.4 47 183-229 59-109 (114)
111 2l43_A N-teminal domain from h 69.8 0.93 3.2E-05 33.9 0.0 53 180-232 23-79 (88)
112 2dj7_A Actin-binding LIM prote 67.9 4.4 0.00015 29.1 3.4 40 181-230 14-53 (80)
113 1twf_L ABC10-alpha, DNA-direct 67.8 3.1 0.0001 29.8 2.4 31 6-36 27-58 (70)
114 3ask_A E3 ubiquitin-protein li 67.2 2.8 9.5E-05 36.9 2.5 45 183-227 175-224 (226)
115 2a20_A Regulating synaptic mem 65.0 2.7 9.3E-05 29.0 1.5 50 178-227 5-59 (62)
116 2ysm_A Myeloid/lymphoid or mix 63.9 3.3 0.00011 31.8 2.1 45 184-228 56-104 (111)
117 2jmi_A Protein YNG1, ING1 homo 63.8 2.1 7.3E-05 32.1 0.9 45 181-227 25-75 (90)
118 2co8_A NEDD9 interacting prote 62.7 5.6 0.00019 28.6 3.1 42 181-232 14-55 (82)
119 2kgg_A Histone demethylase jar 61.8 6.3 0.00021 26.1 2.9 43 184-226 4-52 (52)
120 4gne_A Histone-lysine N-methyl 61.5 8.9 0.0003 29.6 4.2 47 180-232 13-66 (107)
121 1wen_A Inhibitor of growth fam 60.9 6.6 0.00023 27.9 3.1 45 181-229 15-66 (71)
122 2kwj_A Zinc finger protein DPF 60.2 3.8 0.00013 31.8 1.8 34 183-216 2-42 (114)
123 1wee_A PHD finger family prote 59.5 5.3 0.00018 28.3 2.4 46 182-228 16-66 (72)
124 2k2d_A Ring finger and CHY zin 58.5 5.2 0.00018 29.2 2.2 32 7-38 37-70 (79)
125 1wfk_A Zinc finger, FYVE domai 58.4 5.5 0.00019 29.5 2.4 51 181-231 8-66 (88)
126 3v43_A Histone acetyltransfera 58.1 5.6 0.00019 30.7 2.5 35 180-214 3-43 (112)
127 2dar_A PDZ and LIM domain prot 57.8 14 0.00048 26.8 4.6 39 182-231 25-63 (90)
128 1wep_A PHF8; structural genomi 57.8 11 0.00037 27.1 3.9 47 182-229 12-64 (79)
129 1weu_A Inhibitor of growth fam 57.3 12 0.00042 27.9 4.2 43 182-228 36-85 (91)
130 3ql9_A Transcriptional regulat 57.1 5 0.00017 32.2 2.1 44 180-227 55-110 (129)
131 3m62_A Ubiquitin conjugation f 56.9 2.9 9.9E-05 44.1 0.8 49 182-233 891-940 (968)
132 1x63_A Skeletal muscle LIM-pro 56.6 10 0.00035 26.8 3.6 41 183-232 16-56 (82)
133 1x4k_A Skeletal muscle LIM-pro 56.0 9.7 0.00033 26.1 3.3 40 183-231 6-45 (72)
134 1x64_A Alpha-actinin-2 associa 55.9 10 0.00035 27.5 3.5 41 181-232 24-64 (89)
135 2lbm_A Transcriptional regulat 55.9 5.6 0.00019 32.4 2.2 45 180-227 61-116 (142)
136 1a7i_A QCRP2 (LIM1); LIM domai 54.8 8.4 0.00029 27.3 2.8 41 182-232 7-47 (81)
137 1wyh_A SLIM 2, skeletal muscle 54.6 9.5 0.00033 26.2 3.0 40 183-231 6-45 (72)
138 3o70_A PHD finger protein 13; 54.4 5.7 0.00019 28.0 1.8 46 181-227 18-66 (68)
139 2jrp_A Putative cytoplasmic pr 53.0 5.1 0.00017 29.5 1.4 23 7-32 18-40 (81)
140 1pft_A TFIIB, PFTFIIBN; N-term 52.7 5.8 0.0002 25.9 1.5 32 6-37 4-38 (50)
141 1x4l_A Skeletal muscle LIM-pro 52.3 14 0.00048 25.4 3.6 40 182-230 5-46 (72)
142 2con_A RUH-035 protein, NIN on 51.7 12 0.00041 27.3 3.2 31 8-39 16-46 (79)
143 2rsd_A E3 SUMO-protein ligase 50.8 5.4 0.00018 28.0 1.2 43 183-227 11-64 (68)
144 2d8x_A Protein pinch; LIM doma 50.8 14 0.00047 25.3 3.3 40 182-232 5-44 (70)
145 2zet_C Melanophilin; complex, 50.7 5.6 0.00019 32.8 1.4 47 181-228 67-117 (153)
146 1x4w_A Hypothetical protein FL 50.3 2.7 9.3E-05 29.8 -0.5 30 6-36 14-44 (67)
147 1x61_A Thyroid receptor intera 50.2 15 0.00051 25.2 3.5 39 183-230 6-44 (72)
148 3c6w_A P28ING5, inhibitor of g 50.0 5.3 0.00018 27.3 1.0 42 182-227 9-57 (59)
149 1y02_A CARP2, FYVE-ring finger 49.9 4.6 0.00016 31.9 0.7 48 182-229 19-67 (120)
150 1g47_A Pinch protein; LIM doma 49.5 13 0.00044 25.9 3.1 42 182-232 11-52 (77)
151 1wem_A Death associated transc 49.0 4.1 0.00014 29.1 0.3 45 183-228 17-70 (76)
152 1z2q_A LM5-1; membrane protein 49.0 5.4 0.00018 29.2 1.0 50 181-230 20-78 (84)
153 3f6q_B LIM and senescent cell 48.5 13 0.00045 25.2 3.0 42 182-232 11-52 (72)
154 2vpb_A Hpygo1, pygopus homolog 48.1 7.2 0.00025 27.2 1.5 33 181-213 7-41 (65)
155 2vnf_A ING 4, P29ING4, inhibit 48.0 5.8 0.0002 27.1 1.0 42 182-227 10-58 (60)
156 1wew_A DNA-binding family prot 47.3 6.4 0.00022 28.3 1.1 47 182-229 16-73 (78)
157 1x68_A FHL5 protein; four-and- 47.0 15 0.00053 25.5 3.2 39 183-230 6-46 (76)
158 1dvp_A HRS, hepatocyte growth 46.9 29 0.00098 29.7 5.5 35 182-216 161-196 (220)
159 2ri7_A Nucleosome-remodeling f 46.8 4.7 0.00016 33.4 0.4 47 181-228 7-59 (174)
160 1v6g_A Actin binding LIM prote 45.9 20 0.00069 25.2 3.7 38 183-231 16-53 (81)
161 2d8z_A Four and A half LIM dom 45.7 18 0.00061 24.6 3.3 38 183-231 6-43 (70)
162 2gmg_A Hypothetical protein PF 45.7 10 0.00036 29.2 2.2 31 6-36 66-97 (105)
163 1zbd_B Rabphilin-3A; G protein 45.6 10 0.00034 30.5 2.2 48 181-228 54-107 (134)
164 2cor_A Pinch protein; LIM doma 45.2 14 0.00048 26.2 2.7 40 182-232 15-54 (79)
165 1joc_A EEA1, early endosomal a 44.8 5.9 0.0002 31.4 0.6 35 182-216 69-104 (125)
166 2l4z_A DNA endonuclease RBBP8, 44.7 14 0.00048 28.8 2.9 39 182-230 61-99 (123)
167 2d8y_A Eplin protein; LIM doma 44.5 19 0.00064 26.1 3.4 42 181-232 14-55 (91)
168 1z60_A TFIIH basal transcripti 44.5 6.7 0.00023 27.0 0.8 43 183-225 16-58 (59)
169 2yw8_A RUN and FYVE domain-con 44.1 14 0.00048 26.7 2.6 48 182-229 19-73 (82)
170 2lv2_A Insulinoma-associated p 44.0 9.7 0.00033 27.7 1.7 33 3-35 24-68 (85)
171 1wfp_A Zinc finger (AN1-like) 43.0 7.9 0.00027 27.9 1.0 28 6-36 24-51 (74)
172 1nyp_A Pinch protein; LIM doma 42.9 19 0.00064 24.2 3.0 38 183-231 6-43 (66)
173 1wg2_A Zinc finger (AN1-like) 42.9 7.6 0.00026 27.2 0.9 28 6-36 14-41 (64)
174 1x6a_A LIMK-2, LIM domain kina 42.9 15 0.00053 25.8 2.6 38 183-231 16-53 (81)
175 2l3k_A Rhombotin-2, linker, LI 42.8 10 0.00035 29.4 1.8 28 184-212 10-37 (123)
176 3zyq_A Hepatocyte growth facto 42.7 35 0.0012 29.5 5.4 48 182-229 164-220 (226)
177 1dx8_A Rubredoxin; electron tr 42.3 18 0.00061 25.7 2.8 32 1-32 1-49 (70)
178 1x62_A C-terminal LIM domain p 42.3 17 0.00056 25.6 2.7 39 181-230 14-52 (79)
179 3t7l_A Zinc finger FYVE domain 41.8 13 0.00044 27.5 2.1 48 182-229 20-74 (90)
180 1zfo_A LAsp-1; LIM domain, zin 41.7 7.1 0.00024 23.0 0.5 28 183-212 4-31 (31)
181 2ct7_A Ring finger protein 31; 41.7 9.9 0.00034 27.8 1.5 43 185-227 28-75 (86)
182 2jne_A Hypothetical protein YF 41.2 7.1 0.00024 29.7 0.6 29 9-37 34-62 (101)
183 1wfh_A Zinc finger (AN1-like) 41.0 13 0.00046 26.0 1.9 28 6-36 14-41 (64)
184 1wd2_A Ariadne-1 protein homol 40.0 16 0.00056 24.9 2.2 37 183-219 7-48 (60)
185 2b9d_A E7 protein; zinc finger 39.0 12 0.00042 25.0 1.4 22 10-31 11-49 (52)
186 2d8v_A Zinc finger FYVE domain 38.7 18 0.0006 25.5 2.2 30 181-214 7-37 (67)
187 2dmd_A Zinc finger protein 64, 38.3 13 0.00044 26.3 1.6 34 2-35 3-48 (96)
188 2jne_A Hypothetical protein YF 38.2 14 0.00046 28.2 1.7 28 6-37 47-74 (101)
189 2yt9_A Zinc finger-containing 38.0 16 0.00054 25.8 2.1 34 2-35 2-47 (95)
190 2cur_A Skeletal muscle LIM-pro 37.9 21 0.00073 24.2 2.7 37 183-230 6-42 (69)
191 2egq_A FHL1 protein; LIM domai 37.5 29 0.001 23.9 3.4 40 183-231 16-58 (77)
192 2g6q_A Inhibitor of growth pro 36.9 12 0.0004 25.9 1.1 44 182-227 11-59 (62)
193 4gzn_C ZFP-57, zinc finger pro 36.8 13 0.00044 25.1 1.3 30 6-35 3-44 (60)
194 2dlo_A Thyroid receptor-intera 36.6 30 0.001 24.2 3.4 39 182-231 15-53 (81)
195 1ryq_A DNA-directed RNA polyme 35.7 16 0.00054 26.0 1.6 20 9-32 13-32 (69)
196 1vd4_A Transcription initiatio 34.8 28 0.00095 22.8 2.8 33 6-38 13-54 (62)
197 1x4u_A Zinc finger, FYVE domai 33.7 25 0.00086 25.4 2.6 34 182-215 14-48 (84)
198 3uk3_C Zinc finger protein 217 33.3 12 0.00042 23.6 0.7 30 6-35 3-44 (57)
199 1b8t_A Protein (CRP1); LIM dom 33.1 31 0.0011 28.7 3.4 40 182-231 115-154 (192)
200 2cuq_A Four and A half LIM dom 32.4 31 0.0011 24.0 2.8 37 183-230 16-52 (80)
201 2jrp_A Putative cytoplasmic pr 32.2 24 0.00081 25.9 2.1 30 8-37 3-32 (81)
202 2lce_A B-cell lymphoma 6 prote 32.2 19 0.00066 24.2 1.7 32 4-35 14-57 (74)
203 1vfy_A Phosphatidylinositol-3- 31.7 26 0.00088 24.7 2.3 34 183-216 12-46 (73)
204 3o7a_A PHD finger protein 13 v 31.4 19 0.00067 23.5 1.5 41 187-227 8-51 (52)
205 2cup_A Skeletal muscle LIM-pro 31.1 43 0.0015 24.3 3.6 10 184-193 7-16 (101)
206 2ehe_A Four and A half LIM dom 31.0 31 0.0011 24.2 2.7 39 183-230 16-54 (82)
207 1rfh_A RAS association (ralgds 30.6 25 0.00085 23.7 1.9 23 6-30 21-43 (59)
208 2fnf_X Putative RAS effector N 30.5 24 0.00083 24.9 1.9 23 6-30 34-56 (72)
209 1wff_A Riken cDNA 2810002D23 p 30.0 19 0.00065 26.6 1.3 28 7-36 25-52 (85)
210 2ida_A Hypothetical protein; z 29.8 24 0.00081 27.0 1.9 18 2-19 70-87 (102)
211 1x3h_A Leupaxin; paxillin fami 29.7 36 0.0012 23.6 2.8 39 183-232 16-54 (80)
212 2iyb_E Testin, TESS, TES; LIM 29.7 43 0.0015 22.4 3.1 40 183-231 3-44 (65)
213 1m3v_A FLIN4, fusion of the LI 29.5 25 0.00085 27.0 2.0 48 183-231 33-81 (122)
214 2xqn_T Testin, TESS; metal-bin 29.4 40 0.0014 25.7 3.2 46 182-231 30-75 (126)
215 1weo_A Cellulose synthase, cat 29.2 73 0.0025 23.7 4.3 50 182-231 16-70 (93)
216 1x5w_A Zinc finger protein 64, 28.9 25 0.00086 23.3 1.8 31 5-35 7-49 (70)
217 2ewl_A Protein E7; HPV, oncopr 28.8 11 0.00038 25.6 -0.1 21 10-30 16-53 (56)
218 1x6e_A Zinc finger protein 24; 28.7 23 0.00077 23.7 1.5 30 6-35 13-54 (72)
219 1b8t_A Protein (CRP1); LIM dom 28.7 43 0.0015 27.8 3.5 40 182-231 7-46 (192)
220 2cs3_A Protein C14ORF4, MY039 27.9 33 0.0011 25.2 2.2 36 182-218 15-52 (93)
221 2m0e_A Zinc finger and BTB dom 27.8 22 0.00076 18.3 1.1 11 24-34 3-13 (29)
222 1bbo_A Human enhancer-binding 27.6 17 0.00059 22.8 0.7 28 8-35 2-41 (57)
223 1wig_A KIAA1808 protein; LIM d 27.2 28 0.00095 24.1 1.8 37 183-230 6-42 (73)
224 2jvx_A NF-kappa-B essential mo 26.9 17 0.00056 21.2 0.4 12 220-231 4-15 (28)
225 2akl_A PHNA-like protein PA012 26.6 17 0.00057 29.1 0.5 14 24-37 28-41 (138)
226 1wfl_A Zinc finger protein 216 26.4 22 0.00075 25.6 1.1 27 7-36 25-51 (74)
227 2dlq_A GLI-kruppel family memb 26.2 28 0.00097 25.5 1.8 33 2-34 2-46 (124)
228 1vq8_Z 50S ribosomal protein L 26.0 21 0.00073 26.2 1.0 29 6-34 26-56 (83)
229 1ard_A Yeast transcription fac 25.7 25 0.00085 18.2 1.0 12 24-35 3-14 (29)
230 1j2o_A FLIN2, fusion of rhombo 25.4 37 0.0013 25.7 2.3 38 183-230 4-41 (114)
231 6rxn_A Rubredoxin; electron tr 25.4 52 0.0018 21.3 2.7 28 5-32 2-39 (46)
232 2jny_A Uncharacterized BCR; st 25.3 28 0.00094 24.5 1.4 21 212-232 3-23 (67)
233 2adr_A ADR1; transcription reg 24.6 23 0.00079 22.5 0.9 28 7-34 2-41 (60)
234 3a1b_A DNA (cytosine-5)-methyl 24.4 28 0.00094 28.8 1.5 34 181-218 78-114 (159)
235 2eps_A POZ-, at HOOK-, and zin 24.2 45 0.0015 20.9 2.3 29 6-34 11-52 (54)
236 1rut_X Flinc4, fusion protein 24.2 48 0.0016 27.4 3.0 28 184-212 71-98 (188)
237 1znf_A 31ST zinc finger from X 23.8 29 0.001 17.6 1.1 12 24-35 2-13 (27)
238 2kpi_A Uncharacterized protein 23.5 24 0.00083 23.8 0.8 21 212-232 3-23 (56)
239 2v3b_B Rubredoxin 2, rubredoxi 23.5 59 0.002 21.8 2.7 27 6-32 2-45 (55)
240 3ga8_A HTH-type transcriptiona 22.9 38 0.0013 24.0 1.8 15 23-37 2-17 (78)
241 2rgt_A Fusion of LIM/homeobox 22.7 55 0.0019 26.5 3.1 46 182-232 33-78 (169)
242 2pk7_A Uncharacterized protein 22.7 29 0.00098 24.5 1.1 20 213-232 2-21 (69)
243 4bbq_A Lysine-specific demethy 22.5 25 0.00084 26.9 0.8 45 184-228 61-114 (117)
244 2kvh_A Zinc finger and BTB dom 22.5 24 0.00081 18.2 0.5 11 24-34 4-14 (27)
245 3bvo_A CO-chaperone protein HS 22.4 39 0.0013 28.9 2.1 44 6-53 9-53 (207)
246 3cw1_L U1 small nuclear ribonu 22.4 27 0.00091 25.3 0.9 13 6-18 2-14 (77)
247 2xjy_A Rhombotin-2; oncoprotei 22.3 57 0.002 24.9 3.0 38 184-230 68-105 (131)
248 2jr6_A UPF0434 protein NMA0874 22.3 28 0.00096 24.5 1.0 19 213-231 2-20 (68)
249 3mpx_A FYVE, rhogef and PH dom 22.2 19 0.00064 33.8 0.0 48 182-229 375-430 (434)
250 2kn9_A Rubredoxin; metalloprot 22.2 69 0.0024 23.3 3.1 28 5-32 25-69 (81)
251 1p7a_A BF3, BKLF, kruppel-like 22.0 32 0.0011 19.2 1.1 13 23-35 11-23 (37)
252 1klr_A Zinc finger Y-chromosom 21.9 34 0.0012 17.6 1.1 12 24-35 3-14 (30)
253 2jtn_A LIM domain-binding prot 21.9 61 0.0021 26.5 3.2 11 220-230 120-130 (182)
254 1paa_A Yeast transcription fac 21.8 32 0.0011 17.9 1.0 11 24-34 3-13 (30)
255 2lvu_A Zinc finger and BTB dom 26.8 20 0.00068 18.3 0.0 13 24-36 3-15 (26)
256 1rut_X Flinc4, fusion protein 21.0 44 0.0015 27.6 2.1 50 182-232 32-82 (188)
257 1rik_A E6APC1 peptide; E6-bind 20.9 27 0.00091 18.1 0.5 11 24-34 3-13 (29)
258 2enz_A NPKC-theta, protein kin 20.9 41 0.0014 22.9 1.6 25 6-30 22-47 (65)
259 2k5c_A Uncharacterized protein 20.7 25 0.00085 25.8 0.4 11 24-34 52-62 (95)
260 3mjh_B Early endosome antigen 20.6 28 0.00096 21.1 0.6 9 221-229 7-15 (34)
261 3c5k_A HD6, histone deacetylas 20.4 25 0.00087 27.0 0.4 16 4-19 71-86 (109)
262 1yuz_A Nigerythrin; rubrythrin 20.2 33 0.0011 29.2 1.2 23 199-228 173-195 (202)
263 2js4_A UPF0434 protein BB2007; 20.1 30 0.001 24.4 0.8 19 213-231 2-20 (70)
264 1loi_A Cyclic 3',5'-AMP specif 20.1 18 0.00061 20.0 -0.4 13 205-217 5-17 (26)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.67 E-value=3.2e-17 Score=126.67 Aligned_cols=77 Identities=35% Similarity=0.906 Sum_probs=67.9
Q ss_pred CCCCCCcchhhhhcCCceeeeccc--ccccccccccccccccCCceEEccccceeccccchhhhccCCCcCcccccccC
Q 021656 155 RRGPPPAARSAIDAMPTVRITQRH--LRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPL 231 (309)
Q Consensus 155 ~~~~ppa~~~~i~~lp~~~~~~~~--~~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~ 231 (309)
.....+++++.|++||.+.+.... ...+..|+||++.|..++.++.|+|+|.||..||..||+.+.+||+||+.+..
T Consensus 11 ~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 11 MVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 446778999999999999887654 34567899999999988889999999999999999999999999999998864
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2e-16 Score=117.51 Aligned_cols=71 Identities=28% Similarity=0.717 Sum_probs=61.3
Q ss_pred chhhhhcCCceeeeccc-ccccccccccccccccCCceEEccccceeccccchhhhccCCCcCcccccccCC
Q 021656 162 ARSAIDAMPTVRITQRH-LRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQ 232 (309)
Q Consensus 162 ~~~~i~~lp~~~~~~~~-~~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~~ 232 (309)
+...|+.||.+++.... ..+...|+||++.|..++.++.|+|+|+||..||.+||+.+.+||+||+.+...
T Consensus 2 s~~~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 2 SSGSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCCCCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred cHhhHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 45678889998887654 345678999999999988899999999999999999999999999999988653
No 3
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.52 E-value=1.3e-14 Score=108.25 Aligned_cols=58 Identities=52% Similarity=1.225 Sum_probs=51.1
Q ss_pred ccccccccccccccccCCceEEccccceeccccchhhhccCCCcCcccccccCCCCCC
Q 021656 179 LRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQGSSS 236 (309)
Q Consensus 179 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~~~~~~ 236 (309)
......|+||++.|..+..++.|+|+|.||..||..|++.+.+||+||+.+.......
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCC
Confidence 3456799999999998888899999999999999999999999999999987665543
No 4
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.49 E-value=1e-14 Score=101.45 Aligned_cols=51 Identities=39% Similarity=0.974 Sum_probs=46.7
Q ss_pred cccccccccccccccCCceEEcc-ccceeccccchhhhccCCCcCccccccc
Q 021656 180 RSDSHCPVCQDKFELGSEARQMP-CNHIYHSDCIVPWLVQHNSCPVCRQELP 230 (309)
Q Consensus 180 ~~~~~C~IC~~~~~~~~~~~~lp-C~H~fh~~Ci~~Wl~~~~sCP~CR~~l~ 230 (309)
+++..|+||++.|..++.+..++ |+|.||..||.+|++.+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 45678999999999888889998 9999999999999999999999999875
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.48 E-value=1.3e-14 Score=105.66 Aligned_cols=55 Identities=31% Similarity=0.954 Sum_probs=49.0
Q ss_pred cccccccccccccccCCceEEccccceeccccchhhhccCCCcCcccccccCCCC
Q 021656 180 RSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQGS 234 (309)
Q Consensus 180 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~~~~ 234 (309)
.....|+||++.|..++.++.++|+|.||..||..|+..+.+||+||..|.....
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcCC
Confidence 4467899999999888889999999999999999999999999999999876543
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2.7e-14 Score=105.38 Aligned_cols=54 Identities=28% Similarity=0.776 Sum_probs=48.5
Q ss_pred cccccccccccccccCCceEEccccceeccccchhhhccCCCcCcccccccCCC
Q 021656 180 RSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQG 233 (309)
Q Consensus 180 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~~~ 233 (309)
.....|+||++.|..+..++.|+|+|.||..||..|++.+.+||+||+.+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 456789999999998888899999999999999999999999999999886543
No 7
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.36 E-value=2.7e-13 Score=107.72 Aligned_cols=50 Identities=26% Similarity=0.614 Sum_probs=43.1
Q ss_pred ccccccccccccccCC---------------ceEEccccceeccccchhhhccCCCcCccccccc
Q 021656 181 SDSHCPVCQDKFELGS---------------EARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 230 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~~---------------~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~ 230 (309)
.+..|+||++.|...- .++.++|+|.||..||.+||..+.+||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 4578999999987541 3677899999999999999999999999999864
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.35 E-value=2.9e-13 Score=93.88 Aligned_cols=50 Identities=28% Similarity=0.736 Sum_probs=43.5
Q ss_pred ccccccccccccccC-CceEEccccceeccccchhhhccCCCcCccccccc
Q 021656 181 SDSHCPVCQDKFELG-SEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 230 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~-~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~ 230 (309)
....|+||++.|..+ +.++.++|+|.||..||.+|++.+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 356899999998653 35788999999999999999999999999999874
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.35 E-value=4e-13 Score=107.23 Aligned_cols=52 Identities=23% Similarity=0.621 Sum_probs=42.6
Q ss_pred ccccccccccccccCC---------------ceEEccccceeccccchhhh-----ccCCCcCcccccccCC
Q 021656 181 SDSHCPVCQDKFELGS---------------EARQMPCNHIYHSDCIVPWL-----VQHNSCPVCRQELPLQ 232 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~~---------------~~~~lpC~H~fh~~Ci~~Wl-----~~~~sCP~CR~~l~~~ 232 (309)
.+..|+||++.|..+. .++.++|+|+||..||..|| ..+.+||+||..+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3468999999996543 34578999999999999999 4567899999988654
No 10
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=2.1e-13 Score=102.89 Aligned_cols=50 Identities=28% Similarity=0.734 Sum_probs=41.1
Q ss_pred cccccccccccc-----------cCCceEEcc-ccceeccccchhhhccCCCcCcccccccC
Q 021656 182 DSHCPVCQDKFE-----------LGSEARQMP-CNHIYHSDCIVPWLVQHNSCPVCRQELPL 231 (309)
Q Consensus 182 ~~~C~IC~~~~~-----------~~~~~~~lp-C~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~ 231 (309)
+..|+||++.|. .++.++.++ |+|.||..||.+||+.+++||+||+.+..
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 456888887774 345566666 99999999999999999999999998754
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.31 E-value=4.5e-13 Score=97.70 Aligned_cols=54 Identities=26% Similarity=0.672 Sum_probs=46.3
Q ss_pred cccccccccccccccC----CceEEccccceeccccchhhhccCCCcCcccccccCCC
Q 021656 180 RSDSHCPVCQDKFELG----SEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQG 233 (309)
Q Consensus 180 ~~~~~C~IC~~~~~~~----~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~~~ 233 (309)
.++..|+||++.|... ..++.++|+|.||..||.+|++.+.+||+||+.+...+
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 3567899999998653 45688999999999999999999999999999987544
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=3.8e-13 Score=97.36 Aligned_cols=52 Identities=27% Similarity=0.694 Sum_probs=44.8
Q ss_pred cccccccccccccccC----CceEEccccceeccccchhhhccCCCcCcccccccC
Q 021656 180 RSDSHCPVCQDKFELG----SEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPL 231 (309)
Q Consensus 180 ~~~~~C~IC~~~~~~~----~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~ 231 (309)
.....|+||++.|... ..++.++|+|.||..||..|+..+.+||+||+.|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 4567899999999753 345889999999999999999999999999998753
No 13
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=1.2e-12 Score=95.43 Aligned_cols=51 Identities=27% Similarity=0.755 Sum_probs=44.6
Q ss_pred cccccccccccccccCCceEEccccceeccccchhhhccCCCcCcccccccCCCC
Q 021656 180 RSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQGS 234 (309)
Q Consensus 180 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~~~~ 234 (309)
.....|+||++.+.. +.++|+|.||..||..|+..+.+||+||+.+.....
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence 456789999999864 789999999999999999999999999999875543
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.27 E-value=8.3e-13 Score=94.10 Aligned_cols=52 Identities=27% Similarity=0.677 Sum_probs=44.7
Q ss_pred cccccccccccccC----CceEEccccceeccccchhhhccCCCcCcccccccCCC
Q 021656 182 DSHCPVCQDKFELG----SEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQG 233 (309)
Q Consensus 182 ~~~C~IC~~~~~~~----~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~~~ 233 (309)
...|+||++.+... ..+..++|+|.||..||..|++.+.+||+||+.+...+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 46899999998753 45578899999999999999999999999999886543
No 15
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.25 E-value=4.8e-13 Score=107.98 Aligned_cols=51 Identities=25% Similarity=0.616 Sum_probs=1.0
Q ss_pred ccccccccccccccC-------------C--ceEEccccceeccccchhhhccCCCcCcccccccC
Q 021656 181 SDSHCPVCQDKFELG-------------S--EARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPL 231 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~-------------~--~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~ 231 (309)
.++.|+||++.|... + .+..++|+|.||..||.+||..+.+||+||+++..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 357899999999652 1 23346899999999999999999999999998643
No 16
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=2.9e-12 Score=96.64 Aligned_cols=53 Identities=25% Similarity=0.696 Sum_probs=44.6
Q ss_pred ccccccccccccccCCceEEcccc-----ceeccccchhhhccCC--CcCcccccccCCCC
Q 021656 181 SDSHCPVCQDKFELGSEARQMPCN-----HIYHSDCIVPWLVQHN--SCPVCRQELPLQGS 234 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~~~~~~lpC~-----H~fh~~Ci~~Wl~~~~--sCP~CR~~l~~~~~ 234 (309)
++..|.||+++|..++.+ ++||. |.||..||.+||..++ +||+||+.+..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~ 73 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETK 73 (80)
T ss_dssp TSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCC
T ss_pred CCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcc
Confidence 457899999999876655 69996 9999999999998764 89999999876554
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.25 E-value=2.6e-12 Score=92.94 Aligned_cols=49 Identities=27% Similarity=0.777 Sum_probs=43.0
Q ss_pred ccccccccccccccCCceEEccccceeccccchhhhccCCCcCcccccccC
Q 021656 181 SDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPL 231 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~ 231 (309)
.+..|+||++.+.. .++.++|+|.||..||..|++.+.+||+||+.+..
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 45689999999863 46889999999999999999999999999998853
No 18
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=2.7e-12 Score=94.27 Aligned_cols=55 Identities=22% Similarity=0.463 Sum_probs=45.0
Q ss_pred ccccccccccccccccCCceEEccccceeccccchhhhccCCCcCcccccccCCCCC
Q 021656 179 LRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQGSS 235 (309)
Q Consensus 179 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~~~~~ 235 (309)
++....|+||++.|.. .+..++|+|.||..||..|+..+.+||+||+.+...+..
T Consensus 12 ~~~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 12 LTPYILCSICKGYLID--ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp CCGGGSCTTTSSCCSS--CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSC
T ss_pred cCCCCCCCCCChHHHC--cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccc
Confidence 3456789999999864 233349999999999999999989999999998765543
No 19
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=3e-12 Score=93.77 Aligned_cols=50 Identities=24% Similarity=0.612 Sum_probs=43.2
Q ss_pred cccccccccccccccCCceEEccccceeccccchhhhccCCCcCcccccccCC
Q 021656 180 RSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQ 232 (309)
Q Consensus 180 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~~ 232 (309)
.....|+||++.+.. .+.++|+|.||..||..|+..+.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBCSS---EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCCCCccCCcccCC---CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 345789999999853 47889999999999999999999999999988643
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=5.1e-12 Score=95.76 Aligned_cols=55 Identities=24% Similarity=0.616 Sum_probs=46.3
Q ss_pred cccccccccccccccccCCc-eEEccccceeccccchhhhccC---CCcCcccccccCC
Q 021656 178 HLRSDSHCPVCQDKFELGSE-ARQMPCNHIYHSDCIVPWLVQH---NSCPVCRQELPLQ 232 (309)
Q Consensus 178 ~~~~~~~C~IC~~~~~~~~~-~~~lpC~H~fh~~Ci~~Wl~~~---~sCP~CR~~l~~~ 232 (309)
.+.+...|+||++.|...+. .+.++|+|.||..||..|+..+ ..||+||+.+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 34566789999999976543 7889999999999999999876 6899999987654
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.19 E-value=1e-11 Score=91.80 Aligned_cols=53 Identities=26% Similarity=0.657 Sum_probs=43.3
Q ss_pred ccccccccccccccccCCceEEcc-ccceeccccchhhhccC--CCcCcccccccCCCC
Q 021656 179 LRSDSHCPVCQDKFELGSEARQMP-CNHIYHSDCIVPWLVQH--NSCPVCRQELPLQGS 234 (309)
Q Consensus 179 ~~~~~~C~IC~~~~~~~~~~~~lp-C~H~fh~~Ci~~Wl~~~--~sCP~CR~~l~~~~~ 234 (309)
+.....|+||++.|.. .+.++ |+|.||..||..|+..+ .+||+||+.+...+.
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2yur_A 12 IPDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA 67 (74)
T ss_dssp SCGGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTT
T ss_pred CCCCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccc
Confidence 3456789999999964 47799 99999999999999865 689999997654433
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.3e-11 Score=90.39 Aligned_cols=52 Identities=23% Similarity=0.645 Sum_probs=43.0
Q ss_pred ccccccccccccccccCCceEEccccceeccccchhhhc---cCCCcCcccccccCCC
Q 021656 179 LRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLV---QHNSCPVCRQELPLQG 233 (309)
Q Consensus 179 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~---~~~sCP~CR~~l~~~~ 233 (309)
+.....|+||++.|. ..+.++|+|.||..||..|++ ....||+||+.+..++
T Consensus 17 ~~~~~~C~IC~~~~~---~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 17 LQEEVICPICLDILQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCBCTTTCSBCS---SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred CccCCEeccCCcccC---CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 345678999999986 457789999999999999997 3557999999886543
No 23
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.14 E-value=8.3e-12 Score=103.25 Aligned_cols=50 Identities=30% Similarity=0.853 Sum_probs=43.3
Q ss_pred cccccccccccccccCCceEEccccceeccccchhhhccCCCcCcccccccCC
Q 021656 180 RSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQ 232 (309)
Q Consensus 180 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~~ 232 (309)
+.+..|+||++.|. .++.+||+|.||..||..|+..+.+||+||+.+...
T Consensus 51 ~~~~~C~iC~~~~~---~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 51 ENELQCIICSEYFI---EAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHHSBCTTTCSBCS---SEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cccCCCcccCcccC---CceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 34568999999985 357899999999999999999999999999988543
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=1.1e-11 Score=89.28 Aligned_cols=50 Identities=18% Similarity=0.523 Sum_probs=41.9
Q ss_pred cccccccccccccccCCceEEccccceeccccchhhhc-cCCCcCcccccccCC
Q 021656 180 RSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLV-QHNSCPVCRQELPLQ 232 (309)
Q Consensus 180 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~-~~~sCP~CR~~l~~~ 232 (309)
.+...|+||++.+..+ +.++|+|.||..||..|+. ....||+||+.+..+
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 4567899999998644 4589999999999999995 556899999988654
No 25
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=1.6e-11 Score=92.05 Aligned_cols=48 Identities=19% Similarity=0.518 Sum_probs=42.3
Q ss_pred cccccccccccccccCCceEEccccceeccccchhhhccCCCcCccccccc
Q 021656 180 RSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 230 (309)
Q Consensus 180 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~ 230 (309)
.....|+||++.|.. .+.++|+|.||..||..|+....+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQN---PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCS---EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcC---eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 345789999999854 467999999999999999999899999999885
No 26
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.10 E-value=1.6e-11 Score=91.22 Aligned_cols=51 Identities=24% Similarity=0.628 Sum_probs=43.0
Q ss_pred ccccccccccccccccCCceEEccccceeccccchhhhcc-------CCCcCcccccccCC
Q 021656 179 LRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQ-------HNSCPVCRQELPLQ 232 (309)
Q Consensus 179 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~-------~~sCP~CR~~l~~~ 232 (309)
+.+...|+||++.|... +.++|+|.||..||..|+.. ...||+||..+...
T Consensus 9 ~~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 9 VQEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred cccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 34568899999998643 56899999999999999987 56799999988654
No 27
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.10 E-value=2.7e-11 Score=90.01 Aligned_cols=51 Identities=20% Similarity=0.455 Sum_probs=43.5
Q ss_pred ccccccccccccccccCCceEEccccceeccccchhhhcc-CCCcCcccccccCC
Q 021656 179 LRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQ-HNSCPVCRQELPLQ 232 (309)
Q Consensus 179 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~-~~sCP~CR~~l~~~ 232 (309)
+.+...|+||++.|.. .+.++|+|.||..||..|+.. +.+||+||..+...
T Consensus 5 ~~~~~~C~IC~~~~~~---Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 5 FPEYFRCPISLELMKD---PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp CSSSSSCTTTSCCCSS---EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred CcccCCCCCccccccC---CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 3456789999999864 477899999999999999987 77899999988654
No 28
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.09 E-value=5.9e-12 Score=98.56 Aligned_cols=52 Identities=31% Similarity=0.713 Sum_probs=43.9
Q ss_pred ccccccccccccccccCCceEE-ccccceeccccchhhhccC-CCcCcccccccCCC
Q 021656 179 LRSDSHCPVCQDKFELGSEARQ-MPCNHIYHSDCIVPWLVQH-NSCPVCRQELPLQG 233 (309)
Q Consensus 179 ~~~~~~C~IC~~~~~~~~~~~~-lpC~H~fh~~Ci~~Wl~~~-~sCP~CR~~l~~~~ 233 (309)
+.+...|+||++.|.. .+. ++|+|.||..||..|+... .+||+||..+....
T Consensus 19 l~~~~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72 (100)
T ss_dssp HHHHTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCccCCccccC---ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence 4556789999999963 456 9999999999999999987 68999999986543
No 29
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=3.7e-11 Score=89.13 Aligned_cols=53 Identities=19% Similarity=0.504 Sum_probs=43.7
Q ss_pred ccccccccccccccCCceEEccccceeccccchhhhccC--CCcCcccccccCCCCC
Q 021656 181 SDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQH--NSCPVCRQELPLQGSS 235 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~--~sCP~CR~~l~~~~~~ 235 (309)
....|+||++.+..+. +...|+|.||..||.+||+.+ .+||+||.++..+...
T Consensus 14 ~i~~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~~ 68 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPK 68 (74)
T ss_dssp SSCBCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCCC
T ss_pred CCCcCcchhhHcccCC--ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCCC
Confidence 4578999999998653 333799999999999999987 7899999998755544
No 30
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=5.5e-11 Score=89.12 Aligned_cols=53 Identities=23% Similarity=0.670 Sum_probs=44.0
Q ss_pred ccccccccccccccccCCceEEccccceeccccchhhhcc------CCCcCcccccccCCCC
Q 021656 179 LRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQ------HNSCPVCRQELPLQGS 234 (309)
Q Consensus 179 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~------~~sCP~CR~~l~~~~~ 234 (309)
+.+...|+||++.|.. .+.++|+|.||..||..|+.. ...||+||..+...+.
T Consensus 16 ~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQ---PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENI 74 (85)
T ss_dssp CCCCCCCTTTCSCCSS---CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSC
T ss_pred ccCCCCCCCCCcccCC---ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhc
Confidence 3456789999999864 367899999999999999987 6789999998875443
No 31
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.07 E-value=3.4e-11 Score=95.25 Aligned_cols=56 Identities=23% Similarity=0.552 Sum_probs=45.4
Q ss_pred ecccccccccccccccccccCCceEEccccceeccccchhhhccCCCcCcccccccCC
Q 021656 175 TQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQ 232 (309)
Q Consensus 175 ~~~~~~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~~ 232 (309)
..+.+.....|+||++.|.. .+..++|+|.||..||..|+..+.+||+||..+...
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 8 KITELNPHLMCVLCGGYFID--ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp EHHHHGGGTBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred chhccCCcCCCccCChHHhC--cCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 33445667899999999863 333349999999999999999999999999988653
No 32
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.06 E-value=3.9e-11 Score=89.94 Aligned_cols=52 Identities=27% Similarity=0.729 Sum_probs=43.7
Q ss_pred ccccccccccccccccCCceEEccccceeccccchhhhcc------CCCcCcccccccCCC
Q 021656 179 LRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQ------HNSCPVCRQELPLQG 233 (309)
Q Consensus 179 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~------~~sCP~CR~~l~~~~ 233 (309)
+.....|+||++.|..+ +.++|+|.||..||..|+.. ...||+||..+..+.
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp CCTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred CccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 34567899999998643 67899999999999999987 668999999887543
No 33
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.05 E-value=4.2e-11 Score=97.03 Aligned_cols=54 Identities=26% Similarity=0.661 Sum_probs=46.2
Q ss_pred ccccccccccccccC----CceEEccccceeccccchhhhccCCCcCcccccccCCCC
Q 021656 181 SDSHCPVCQDKFELG----SEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQGS 234 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~----~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~~~~ 234 (309)
+...|+||++.|..+ ..++.++|+|.||..||..||+.+.+||+||+.+.....
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence 457899999999753 455889999999999999999999999999998865543
No 34
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=7.7e-11 Score=83.97 Aligned_cols=44 Identities=27% Similarity=0.715 Sum_probs=37.3
Q ss_pred ccccccccccccccccCCceEEccccceeccccchhhhc---cCCCcCcc
Q 021656 179 LRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLV---QHNSCPVC 225 (309)
Q Consensus 179 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~---~~~sCP~C 225 (309)
+.+...|+||++.|.. .+.++|+|.||..||..|++ ....||+|
T Consensus 17 ~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSS---CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCC---eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3556789999999864 47789999999999999998 45579998
No 35
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.02 E-value=3.8e-11 Score=93.44 Aligned_cols=49 Identities=29% Similarity=0.642 Sum_probs=42.1
Q ss_pred cccccccccccccccCCceEEc-cccceeccccchhhhccCCCcCcccccccC
Q 021656 180 RSDSHCPVCQDKFELGSEARQM-PCNHIYHSDCIVPWLVQHNSCPVCRQELPL 231 (309)
Q Consensus 180 ~~~~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~ 231 (309)
.+...|+||++.|.. .+.+ +|+|.||..||..|+..+.+||+||..+..
T Consensus 20 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 20 DDLLRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHHTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCCcccCChhhCC---cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 345789999999864 3555 899999999999999999999999998864
No 36
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.00 E-value=3.3e-11 Score=101.26 Aligned_cols=51 Identities=27% Similarity=0.544 Sum_probs=43.4
Q ss_pred ccccccccccccccccCCceEEccccceeccccchhhhccCC-CcCcccccccCC
Q 021656 179 LRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHN-SCPVCRQELPLQ 232 (309)
Q Consensus 179 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~-sCP~CR~~l~~~ 232 (309)
+.....|+||++.|.. .+.++|+|.||..||..|+.... +||+||..+...
T Consensus 75 l~~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQ---PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHHTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CccCCEeecCChhhcC---CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 3456789999999864 46799999999999999998765 799999998765
No 37
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.98 E-value=6.7e-11 Score=100.49 Aligned_cols=52 Identities=33% Similarity=0.756 Sum_probs=42.5
Q ss_pred cccccccccccccccccCCceEEccccceeccccchhhhcc-CCCcCcccccccC
Q 021656 178 HLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQ-HNSCPVCRQELPL 231 (309)
Q Consensus 178 ~~~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~-~~sCP~CR~~l~~ 231 (309)
.+.....|+||++.|.. .+..++|+|.||..||..|+.. +..||+||..+..
T Consensus 50 ~~~~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKN--TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp CCHHHHBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred hCCCCCCCcccChHhhC--cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 34456799999999874 3444599999999999999997 6789999998853
No 38
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.98 E-value=1.3e-10 Score=88.96 Aligned_cols=49 Identities=29% Similarity=0.718 Sum_probs=41.4
Q ss_pred ccccccccccccccccCCceEEcc-ccceeccccchhhhccC--CCcCccccccc
Q 021656 179 LRSDSHCPVCQDKFELGSEARQMP-CNHIYHSDCIVPWLVQH--NSCPVCRQELP 230 (309)
Q Consensus 179 ~~~~~~C~IC~~~~~~~~~~~~lp-C~H~fh~~Ci~~Wl~~~--~sCP~CR~~l~ 230 (309)
+.....|+||++.|.. .+.++ |+|.||..||..|+... ..||+||..+.
T Consensus 10 ~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4566899999999964 47889 99999999999999754 58999999873
No 39
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=1e-10 Score=81.59 Aligned_cols=44 Identities=30% Similarity=0.825 Sum_probs=36.6
Q ss_pred ccccccccccccccccCCceEEccccceeccccchhhh---ccCCCcCcc
Q 021656 179 LRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWL---VQHNSCPVC 225 (309)
Q Consensus 179 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl---~~~~sCP~C 225 (309)
+.....|+||++.+..+ +.++|+|.||..||..|+ ....+||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34567899999999654 668999999999999995 456789998
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.97 E-value=1.2e-10 Score=94.37 Aligned_cols=49 Identities=27% Similarity=0.527 Sum_probs=42.0
Q ss_pred cccccccccccccccCCceEEccccceeccccchhhhccCC-CcCcccccccC
Q 021656 180 RSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHN-SCPVCRQELPL 231 (309)
Q Consensus 180 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~-sCP~CR~~l~~ 231 (309)
.....|+||++.|. ..+.++|+|.||..||..|+..+. +||+||..+..
T Consensus 50 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVF---RPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHc---CcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 45678999999996 447789999999999999998554 89999999865
No 41
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.97 E-value=1.7e-10 Score=82.79 Aligned_cols=52 Identities=27% Similarity=0.579 Sum_probs=41.1
Q ss_pred ccccccccc-ccccCCc-eEEccccceeccccchhhhcc-CCCcCcccccccCCC
Q 021656 182 DSHCPVCQD-KFELGSE-ARQMPCNHIYHSDCIVPWLVQ-HNSCPVCRQELPLQG 233 (309)
Q Consensus 182 ~~~C~IC~~-~~~~~~~-~~~lpC~H~fh~~Ci~~Wl~~-~~sCP~CR~~l~~~~ 233 (309)
+..|+||++ .|..+.. ++.++|+|.||..||..|+.. ...||+||+.+...+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 467999999 7765533 256899999999999999765 457999999886543
No 42
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.95 E-value=1.3e-10 Score=94.06 Aligned_cols=52 Identities=27% Similarity=0.705 Sum_probs=44.5
Q ss_pred ccccccccccccccC----CceEEccccceeccccchhhhccCCCcCcccccccCC
Q 021656 181 SDSHCPVCQDKFELG----SEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQ 232 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~----~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~~ 232 (309)
....|+||++.|... ..++.++|+|.||..||.+||+.+++||+||..+..+
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 457899999998652 3457889999999999999999999999999988654
No 43
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.93 E-value=4.2e-10 Score=78.65 Aligned_cols=47 Identities=28% Similarity=0.654 Sum_probs=39.5
Q ss_pred ccccccccccccccCCceEEccccceeccccchhhhccCCCcCcccccccCCC
Q 021656 181 SDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQG 233 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~~~ 233 (309)
+...|+||++.|... +.|+|+|.||..||..| ...||+||+.+..+.
T Consensus 5 ~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 5 QFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred cCCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 457899999999754 78999999999999885 568999999886544
No 44
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.92 E-value=1.7e-10 Score=92.07 Aligned_cols=49 Identities=24% Similarity=0.657 Sum_probs=41.7
Q ss_pred cccccccccccccccCCceEEccccceeccccchhhhcc-CCCcCcccccccC
Q 021656 180 RSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQ-HNSCPVCRQELPL 231 (309)
Q Consensus 180 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~-~~sCP~CR~~l~~ 231 (309)
.++..|+||++.|.. .+.++|+|.||..||..|+.. ..+||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVE---PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSS---CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCc---eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 345789999999864 478899999999999999986 5689999998753
No 45
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.92 E-value=1.8e-10 Score=91.17 Aligned_cols=50 Identities=24% Similarity=0.713 Sum_probs=41.8
Q ss_pred ccccccccccccccCCceEEccccceeccccchhhhccCC---CcCcccccccCCC
Q 021656 181 SDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHN---SCPVCRQELPLQG 233 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~---sCP~CR~~l~~~~ 233 (309)
....|+||++.|..+ +.++|+|.||..||..|+..+. +||+||..+....
T Consensus 20 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 20 KILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HHTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 456899999998643 5689999999999999998654 7999999887543
No 46
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.89 E-value=2.2e-10 Score=95.23 Aligned_cols=52 Identities=25% Similarity=0.519 Sum_probs=43.6
Q ss_pred cccccccccccccccccCCceEEccccceeccccchhhhccCC-CcCcccccccCC
Q 021656 178 HLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHN-SCPVCRQELPLQ 232 (309)
Q Consensus 178 ~~~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~-sCP~CR~~l~~~ 232 (309)
.+++...|+||++.|..+ +.++|+|.||..||..|+.... +||+||.++..+
T Consensus 27 ~l~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYE 79 (141)
T ss_dssp GCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred cCCcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence 445678999999998644 6789999999999999998665 899999987543
No 47
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.87 E-value=3.7e-10 Score=90.77 Aligned_cols=51 Identities=31% Similarity=0.637 Sum_probs=43.2
Q ss_pred ccccccccccccccccCCceEEccccceeccccchhhhccCC-CcCcccccccCC
Q 021656 179 LRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHN-SCPVCRQELPLQ 232 (309)
Q Consensus 179 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~-sCP~CR~~l~~~ 232 (309)
+.+...|+||++.+.. .+.++|+|.||..||..|+.... +||+||..+...
T Consensus 15 ~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 15 LESKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CCGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcCChhhcC---eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 4556799999999864 47789999999999999998765 899999988653
No 48
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.83 E-value=1e-09 Score=87.98 Aligned_cols=49 Identities=24% Similarity=0.594 Sum_probs=41.0
Q ss_pred cccccccccccccccCCceEEc-cccceeccccchhhhccCCCcCcccccccCCC
Q 021656 180 RSDSHCPVCQDKFELGSEARQM-PCNHIYHSDCIVPWLVQHNSCPVCRQELPLQG 233 (309)
Q Consensus 180 ~~~~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~~~ 233 (309)
.....|+||++.|.. .+.+ +|+|.||..||..|+. ..||+||..+....
T Consensus 20 ~~~~~C~IC~~~~~~---pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~ 69 (117)
T 1jm7_B 20 EKLLRCSRCTNILRE---PVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQD 69 (117)
T ss_dssp HHTTSCSSSCSCCSS---CBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSS
T ss_pred hhCCCCCCCChHhhC---ccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcccc
Confidence 356789999999964 3666 9999999999999998 78999999885443
No 49
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.82 E-value=3.9e-10 Score=107.95 Aligned_cols=48 Identities=25% Similarity=0.770 Sum_probs=41.7
Q ss_pred cccccccccccccCCceEEccccceeccccchhhhc-cCCCcCcccccccCC
Q 021656 182 DSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLV-QHNSCPVCRQELPLQ 232 (309)
Q Consensus 182 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~-~~~sCP~CR~~l~~~ 232 (309)
...|+||++.+. .++.+||+|.||..||..|+. .+.+||+||..+...
T Consensus 332 ~~~C~ICle~~~---~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBC---CEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCC---CeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 368999999884 468899999999999999998 678999999988643
No 50
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.82 E-value=1.1e-09 Score=85.85 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=44.4
Q ss_pred cccccccccccccccCCceEEccccceeccccchhhhccCCCcCcccccccCCC
Q 021656 180 RSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQG 233 (309)
Q Consensus 180 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~~~ 233 (309)
.....|+||++.|.. .+.++|||.|+..||..||..+.+||+|+..+....
T Consensus 27 p~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 77 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD---PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESM 77 (100)
T ss_dssp STTTBCTTTCSBCSS---EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTS
T ss_pred cHhhCCcCccCcccC---CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhh
Confidence 346789999999964 478899999999999999998889999999887544
No 51
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.82 E-value=4.3e-10 Score=89.89 Aligned_cols=51 Identities=22% Similarity=0.521 Sum_probs=42.9
Q ss_pred cccccccccccccccCCceEEccccceeccccchhhhcc-CCCcCcccccccCCC
Q 021656 180 RSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQ-HNSCPVCRQELPLQG 233 (309)
Q Consensus 180 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~-~~sCP~CR~~l~~~~ 233 (309)
.+...|+||++.|.. .+.++|+|.||..||..|+.. ..+||+||..+...+
T Consensus 21 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 21 VKSISCQICEHILAD---PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHHTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred cCCCCCCCCCcHhcC---cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 346789999999853 467899999999999999987 678999999886543
No 52
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.80 E-value=2.9e-09 Score=79.64 Aligned_cols=55 Identities=22% Similarity=0.558 Sum_probs=42.1
Q ss_pred ccccccccccccccccCCceEEcc--ccceeccccchhhhcc-CCCcCcccccccCCCC
Q 021656 179 LRSDSHCPVCQDKFELGSEARQMP--CNHIYHSDCIVPWLVQ-HNSCPVCRQELPLQGS 234 (309)
Q Consensus 179 ~~~~~~C~IC~~~~~~~~~~~~lp--C~H~fh~~Ci~~Wl~~-~~sCP~CR~~l~~~~~ 234 (309)
++++..|+||++.+...+ ++.+| |||.||..||..++.. ...||+||+.+.....
T Consensus 8 ~~~~~~CpICle~~~~~d-~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDD-INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCBCTTTCCBCCTTT-TTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cccCCcCCccCccCcccc-ccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 356678999999886532 33444 9999999999998753 5679999998875544
No 53
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.79 E-value=1.1e-09 Score=83.10 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=43.7
Q ss_pred cccccccccccccccCCceEEccccceeccccchhhhccCCCcCcccccccCC
Q 021656 180 RSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQ 232 (309)
Q Consensus 180 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~~ 232 (309)
.....|+||++.|.. .+.++|||.|+..||..|+..+.+||+|+..+...
T Consensus 12 p~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD---PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred chheECcccCchhcC---CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 356789999999964 48899999999999999999888999999988654
No 54
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.79 E-value=2.1e-09 Score=83.96 Aligned_cols=52 Identities=13% Similarity=0.152 Sum_probs=44.9
Q ss_pred cccccccccccccccCCceEEcccc-ceeccccchhhhccCCCcCcccccccCCCC
Q 021656 180 RSDSHCPVCQDKFELGSEARQMPCN-HIYHSDCIVPWLVQHNSCPVCRQELPLQGS 234 (309)
Q Consensus 180 ~~~~~C~IC~~~~~~~~~~~~lpC~-H~fh~~Ci~~Wl~~~~sCP~CR~~l~~~~~ 234 (309)
.....|+||++.|.. .+.++|+ |.|+..||..||..+.+||+||..+.....
T Consensus 20 p~~~~CpI~~~~m~d---PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L 72 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD---PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQI 72 (98)
T ss_dssp CTTTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTS
T ss_pred cHhcCCcCccccccC---CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhc
Confidence 346789999999964 4789999 999999999999988899999999876543
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.75 E-value=8.8e-10 Score=81.42 Aligned_cols=44 Identities=23% Similarity=0.691 Sum_probs=37.9
Q ss_pred cccccccccccccccCCceEEccccce-eccccchhhhccCCCcCccccccc
Q 021656 180 RSDSHCPVCQDKFELGSEARQMPCNHI-YHSDCIVPWLVQHNSCPVCRQELP 230 (309)
Q Consensus 180 ~~~~~C~IC~~~~~~~~~~~~lpC~H~-fh~~Ci~~Wl~~~~sCP~CR~~l~ 230 (309)
++...|+||++.+. .++.+||+|. ||..|+..| ..||+||+.+.
T Consensus 22 ~~~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 22 QEEKLCKICMDRNI---AIVFVPCGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp HHHTBCTTTSSSBC---CEEEETTCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred ccCCCCCCCCCCCC---CEEEcCCCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 34578999999874 4678899999 999999999 78999999875
No 56
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.73 E-value=3.1e-09 Score=76.35 Aligned_cols=47 Identities=23% Similarity=0.509 Sum_probs=39.3
Q ss_pred ccccccccccccccCCceEEc--cccce-eccccchhhhccCCCcCccccccc
Q 021656 181 SDSHCPVCQDKFELGSEARQM--PCNHI-YHSDCIVPWLVQHNSCPVCRQELP 230 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~~~~~~l--pC~H~-fh~~Ci~~Wl~~~~sCP~CR~~l~ 230 (309)
++..|.||++.+.. +..+ ||+|. |+..|+..|++.+..||+||+.+.
T Consensus 7 ~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKN---GCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSC---EEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCC---EEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 45689999988643 3444 99999 899999999998889999999874
No 57
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.65 E-value=7.7e-09 Score=74.00 Aligned_cols=47 Identities=19% Similarity=0.475 Sum_probs=38.9
Q ss_pred ccccccccccccccCCceEEc--cccce-eccccchhhhccCCCcCccccccc
Q 021656 181 SDSHCPVCQDKFELGSEARQM--PCNHI-YHSDCIVPWLVQHNSCPVCRQELP 230 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~~~~~~l--pC~H~-fh~~Ci~~Wl~~~~sCP~CR~~l~ 230 (309)
....|.||++.+.. ...+ ||+|. |+..|+..|.+.+..||+||+.+.
T Consensus 6 ~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRD---GNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSC---EEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCC---eEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 35689999987642 3444 99998 999999999988889999999874
No 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.53 E-value=1.5e-08 Score=86.09 Aligned_cols=51 Identities=29% Similarity=0.624 Sum_probs=42.9
Q ss_pred ccccccccccccccccCCceEEccccceeccccchhhhccCC-CcCcccccccCC
Q 021656 179 LRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHN-SCPVCRQELPLQ 232 (309)
Q Consensus 179 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~-sCP~CR~~l~~~ 232 (309)
+.+...|+||++.|..+ +.++|+|.||..||..|+.... +||+||..+...
T Consensus 15 ~~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 15 LESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 45678999999998643 6789999999999999998654 899999988653
No 59
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.53 E-value=1.5e-08 Score=95.05 Aligned_cols=52 Identities=23% Similarity=0.599 Sum_probs=39.8
Q ss_pred cccccccccccccccCCce-----EEccccceeccccchhhhccC-----------CCcCcccccccC
Q 021656 180 RSDSHCPVCQDKFELGSEA-----RQMPCNHIYHSDCIVPWLVQH-----------NSCPVCRQELPL 231 (309)
Q Consensus 180 ~~~~~C~IC~~~~~~~~~~-----~~lpC~H~fh~~Ci~~Wl~~~-----------~sCP~CR~~l~~ 231 (309)
+...+|+||++.+..+..+ ....|+|.||..||.+||+.. .+||+||++|..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 3467899999998762222 124699999999999999752 469999998753
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.50 E-value=1.4e-08 Score=78.44 Aligned_cols=49 Identities=24% Similarity=0.609 Sum_probs=39.9
Q ss_pred cccccccccccccccCCceEEcc-ccceeccccchhhhccC------CCcCc--cccc-ccC
Q 021656 180 RSDSHCPVCQDKFELGSEARQMP-CNHIYHSDCIVPWLVQH------NSCPV--CRQE-LPL 231 (309)
Q Consensus 180 ~~~~~C~IC~~~~~~~~~~~~lp-C~H~fh~~Ci~~Wl~~~------~sCP~--CR~~-l~~ 231 (309)
.....|+||++.|.. .+.++ |+|.|+..||..||..+ .+||+ |++. +..
T Consensus 5 ~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred CcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 345789999999964 47786 99999999999999864 48999 9866 543
No 61
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.50 E-value=3e-08 Score=89.87 Aligned_cols=49 Identities=16% Similarity=0.116 Sum_probs=41.4
Q ss_pred ccccccccccccccCCceEEccccceeccccchhhhccC-CCcCcccccccCC
Q 021656 181 SDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQH-NSCPVCRQELPLQ 232 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~-~sCP~CR~~l~~~ 232 (309)
....|+||++.|.. .+.++|||.||..||..|+..+ .+||+||..+...
T Consensus 207 ~~~~c~i~~~~~~d---Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 207 DYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp STTBCTTTCSBCSS---EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred cccCCcCcCCHhcC---CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 45789999999964 4789999999999999999864 4599999988543
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=3e-08 Score=73.18 Aligned_cols=44 Identities=23% Similarity=0.699 Sum_probs=36.1
Q ss_pred ccccccccccccccCCceEEccccce-eccccchhhhccCCCcCcccccccC
Q 021656 181 SDSHCPVCQDKFELGSEARQMPCNHI-YHSDCIVPWLVQHNSCPVCRQELPL 231 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~~~~~~lpC~H~-fh~~Ci~~Wl~~~~sCP~CR~~l~~ 231 (309)
+...|+||++.+. .++.+||+|. ||..|+.. ...||+||..+..
T Consensus 24 ~~~~C~IC~~~~~---~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNI---AIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCC---CBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCC---CEEEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 3467999999874 4578999999 99999964 3689999998854
No 63
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.41 E-value=5.2e-08 Score=69.15 Aligned_cols=48 Identities=25% Similarity=0.696 Sum_probs=37.3
Q ss_pred ccccccccccccccCCceEEcccc--c---eeccccchhhhcc--CCCcCcccccccC
Q 021656 181 SDSHCPVCQDKFELGSEARQMPCN--H---IYHSDCIVPWLVQ--HNSCPVCRQELPL 231 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~~~~~~lpC~--H---~fh~~Ci~~Wl~~--~~sCP~CR~~l~~ 231 (309)
+...|.||+++. ++. ..+||. + .||..||.+|+.. +.+||+|+..+..
T Consensus 5 ~~~~CrIC~~~~--~~~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEEL--GNE-RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEEC--SCC-CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCC--CCc-eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 457899999874 233 368954 4 9999999999974 5689999988753
No 64
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.36 E-value=5.8e-08 Score=72.61 Aligned_cols=44 Identities=30% Similarity=0.658 Sum_probs=37.0
Q ss_pred ccccccccccccccCCceEEccccce-eccccchhhhccCCCcCcccccccC
Q 021656 181 SDSHCPVCQDKFELGSEARQMPCNHI-YHSDCIVPWLVQHNSCPVCRQELPL 231 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~~~~~~lpC~H~-fh~~Ci~~Wl~~~~sCP~CR~~l~~ 231 (309)
....|.||++.+. .++.+||+|. |+..|+..|. .||+||..+..
T Consensus 17 ~~~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEI---NSTFCPCGHTVCCESCAAQLQ----SCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBC---CEEEETTCBCCBCHHHHTTCS----BCTTTCCBCCE
T ss_pred CCCEeEEeCcccC---cEEEECCCCHHHHHHHHHhcC----cCCCCCchhhC
Confidence 4568999998764 5688999999 9999999873 89999998754
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=1.8e-07 Score=67.88 Aligned_cols=45 Identities=29% Similarity=0.682 Sum_probs=37.1
Q ss_pred ccccccccccccccCCceEEccccce-eccccchhhhccCCCcCcccccccCC
Q 021656 181 SDSHCPVCQDKFELGSEARQMPCNHI-YHSDCIVPWLVQHNSCPVCRQELPLQ 232 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~~~~~~lpC~H~-fh~~Ci~~Wl~~~~sCP~CR~~l~~~ 232 (309)
....|.||++.+. .++.+||+|. |+..|+.. ...||+||..+...
T Consensus 14 ~~~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 14 NSKDCVVCQNGTV---NWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp CSSCCSSSSSSCC---CCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred CCCCCCCcCcCCC---CEEEECCCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 4578999998763 5689999999 99999974 46899999988543
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.35 E-value=8.9e-08 Score=82.55 Aligned_cols=50 Identities=16% Similarity=0.094 Sum_probs=42.2
Q ss_pred cccccccccccccccCCceEEccccceeccccchhhhccC-CCcCcccccccCC
Q 021656 180 RSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQH-NSCPVCRQELPLQ 232 (309)
Q Consensus 180 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~-~sCP~CR~~l~~~ 232 (309)
.....|+||++.|.. ++.++|||.|+..||..|+..+ .+||+|+..+...
T Consensus 104 p~~f~CPI~~elm~D---PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred cHhhcccCccccCCC---CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 356789999999964 4788999999999999999864 4799999988654
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.26 E-value=1.8e-07 Score=71.78 Aligned_cols=48 Identities=21% Similarity=0.602 Sum_probs=38.4
Q ss_pred ccccccccccccccCCceEEccccceeccccchhhhcc--------CCCcCc--cccc
Q 021656 181 SDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQ--------HNSCPV--CRQE 228 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~--------~~sCP~--CR~~ 228 (309)
+..+|+||++++.....+..++|+|.||.+||..++.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 34689999999876644445579999999999999873 136999 9987
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.23 E-value=4.1e-07 Score=86.11 Aligned_cols=44 Identities=30% Similarity=0.785 Sum_probs=38.1
Q ss_pred cccccccccccccccCCceEEccccce-eccccchhhhccCCCcCccccccc
Q 021656 180 RSDSHCPVCQDKFELGSEARQMPCNHI-YHSDCIVPWLVQHNSCPVCRQELP 230 (309)
Q Consensus 180 ~~~~~C~IC~~~~~~~~~~~~lpC~H~-fh~~Ci~~Wl~~~~sCP~CR~~l~ 230 (309)
+++..|+||++.+. .++.+||+|. ||..|+..| ..||+||..+.
T Consensus 293 ~~~~~C~IC~~~~~---~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 293 QEERTCKVCMDKEV---SVVFIPCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp HTTCBCTTTSSSBC---CEEEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred cCCCCCCccCCcCC---ceEEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 45678999999885 4688899999 999999998 67999999875
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.18 E-value=2e-07 Score=66.27 Aligned_cols=49 Identities=8% Similarity=0.186 Sum_probs=42.2
Q ss_pred ccccccccccccCCceEEc-cccceeccccchhhhccCCCcCcccccccCCCC
Q 021656 183 SHCPVCQDKFELGSEARQM-PCNHIYHSDCIVPWLVQHNSCPVCRQELPLQGS 234 (309)
Q Consensus 183 ~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~~~~ 234 (309)
..|+||++.+.++ +.+ +|||+|...||.+||+.+.+||+++..|..++.
T Consensus 4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~L 53 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI 53 (61)
T ss_dssp CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhc
Confidence 5799999999743 666 899999999999999988899999998876554
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.16 E-value=4.1e-07 Score=82.46 Aligned_cols=52 Identities=25% Similarity=0.617 Sum_probs=41.9
Q ss_pred cccccccccccccccCCceEEccccceeccccchhhhccC--CCcCc--ccccccCCC
Q 021656 180 RSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQH--NSCPV--CRQELPLQG 233 (309)
Q Consensus 180 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~--~sCP~--CR~~l~~~~ 233 (309)
.....|+||++.|.. .|+.+.|||.|+..||..|+..+ .+||+ |++.+...+
T Consensus 179 ~~el~CPIcl~~f~D--PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~d 234 (267)
T 3htk_C 179 KIELTCPITCKPYEA--PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRD 234 (267)
T ss_dssp BCCSBCTTTSSBCSS--EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGG
T ss_pred ceeeECcCccCcccC--CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhh
Confidence 456789999999964 35556899999999999999864 36999 999875443
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.80 E-value=5.3e-06 Score=64.19 Aligned_cols=45 Identities=24% Similarity=0.665 Sum_probs=37.2
Q ss_pred cccccccccccCCceEEccccceeccccchhhhc-cCCCcCccccccc
Q 021656 184 HCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLV-QHNSCPVCRQELP 230 (309)
Q Consensus 184 ~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~-~~~sCP~CR~~l~ 230 (309)
.|.+|--.+. ...+.+||+|+||.+|+..|.+ ..++||.|+..+.
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 5888876665 4678999999999999999985 4678999998773
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.73 E-value=8.9e-06 Score=73.09 Aligned_cols=53 Identities=19% Similarity=0.492 Sum_probs=42.6
Q ss_pred cccccccccccccCCceEEccccceeccccchhhhccCC--CcCcccccccCCCCCC
Q 021656 182 DSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHN--SCPVCRQELPLQGSSS 236 (309)
Q Consensus 182 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~--sCP~CR~~l~~~~~~~ 236 (309)
...|.||.+.+..+ .+.-.|+|.||..|+..|++.+. .||.|+..++......
T Consensus 180 i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~~~ 234 (238)
T 3nw0_A 180 VKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKV 234 (238)
T ss_dssp CCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCCCC
T ss_pred CCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Confidence 56899999998765 23334999999999999998654 7999999988775543
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.61 E-value=0.011 Score=44.90 Aligned_cols=54 Identities=26% Similarity=0.559 Sum_probs=42.4
Q ss_pred cccccccccccccccCCceEEccc-cceeccccchhhhccCCCcCcccccccCCCCCCCc
Q 021656 180 RSDSHCPVCQDKFELGSEARQMPC-NHIYHSDCIVPWLVQHNSCPVCRQELPLQGSSSSR 238 (309)
Q Consensus 180 ~~~~~C~IC~~~~~~~~~~~~lpC-~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~~~~~~~~ 238 (309)
-+-..|..|+-..+ ....| .|++|..||...|.....||+|++.|+.+-.....
T Consensus 26 ~G~~nCKsCWf~~k-----~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~~~~ 80 (99)
T 2ko5_A 26 LGPQFCKSCWFENK-----GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRPSAA 80 (99)
T ss_dssp SCCCCCCSSCSCCS-----SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCTTTS
T ss_pred cCcccChhhccccC-----CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcceecCcC
Confidence 34568999996543 24445 69999999999999999999999999887665443
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=93.04 E-value=0.06 Score=38.34 Aligned_cols=45 Identities=24% Similarity=0.555 Sum_probs=32.3
Q ss_pred ccccccccccccccCCceEEccccceeccccchhhhccCC----CcCccccc
Q 021656 181 SDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHN----SCPVCRQE 228 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~----sCP~CR~~ 228 (309)
....|.||.+. ++-+.--.|...||..|+.+.|.... .||.|+..
T Consensus 11 ~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 34679999753 33333334999999999999987543 49999754
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.10 E-value=0.052 Score=41.28 Aligned_cols=35 Identities=14% Similarity=0.415 Sum_probs=26.2
Q ss_pred cccccccccccccCCceEEccccceeccccchh-hh
Q 021656 182 DSHCPVCQDKFELGSEARQMPCNHIYHSDCIVP-WL 216 (309)
Q Consensus 182 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~-Wl 216 (309)
+..|.||.+.+.......-+.|+|.|+..|+.. |.
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 468999998754333333489999999999998 54
No 76
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=91.98 E-value=0.1 Score=41.30 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=27.7
Q ss_pred CceecccCCCceeecCCCc-cCCCCCCCceEEec
Q 021656 6 NTHWCYRCRRPVRLQGEDA-VCLYCSGGFVQELD 38 (309)
Q Consensus 6 ~~ywCh~C~r~v~~~~~~~-~CP~C~~gFvEE~~ 38 (309)
..|||..|...+....... .||.|++..++-+.
T Consensus 72 ~~~~C~~CG~~~e~~~~~~~~CP~Cgs~~~~i~~ 105 (119)
T 2kdx_A 72 VELECKDCSHVFKPNALDYGVCEKCHSKNVIITQ 105 (119)
T ss_dssp CEEECSSSSCEECSCCSTTCCCSSSSSCCCEEEE
T ss_pred ceEEcCCCCCEEeCCCCCCCcCccccCCCcEEec
Confidence 5799999999998766667 99999999877553
No 77
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.23 E-value=0.14 Score=35.03 Aligned_cols=45 Identities=31% Similarity=0.752 Sum_probs=31.0
Q ss_pred cccccccccccccccCCceEEccccceeccccchhhhccCC----CcCcccc
Q 021656 180 RSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHN----SCPVCRQ 227 (309)
Q Consensus 180 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~----sCP~CR~ 227 (309)
..+..|.||.+. ++-+.--.|...||..|+.+-|.... .||.|..
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 346789999864 33333334899999999998665432 3888854
No 78
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=89.98 E-value=0.37 Score=36.22 Aligned_cols=46 Identities=33% Similarity=0.660 Sum_probs=32.5
Q ss_pred cccccccccccccccCCceEEccccceeccccchhhhccCC----CcCccccc
Q 021656 180 RSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHN----SCPVCRQE 228 (309)
Q Consensus 180 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~----sCP~CR~~ 228 (309)
..+..|.||.+. ++-+..-.|.-.||..|+.+=|.... .||.|+..
T Consensus 23 ~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 456789999854 33333334889999999988776432 49999764
No 79
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=89.57 E-value=0.26 Score=34.29 Aligned_cols=46 Identities=30% Similarity=0.591 Sum_probs=31.5
Q ss_pred ccccccccccccccCCceEEccccceeccccchhhhccCC----CcCcccccc
Q 021656 181 SDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHN----SCPVCRQEL 229 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~----sCP~CR~~l 229 (309)
.+..|.||.+. ++-+.--.|...||..|+.+-|.... .||.|+...
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 45789999852 33233334889999999997665432 499997643
No 80
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=89.22 E-value=0.19 Score=34.99 Aligned_cols=46 Identities=33% Similarity=0.678 Sum_probs=31.5
Q ss_pred cccccccccccccccCCceEEccccceeccccchhhhccCC----CcCccccc
Q 021656 180 RSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHN----SCPVCRQE 228 (309)
Q Consensus 180 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~----sCP~CR~~ 228 (309)
..+..|.||.+. ++-+.--.|...||..|+.+-|.... .||.|++.
T Consensus 9 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 346789999863 33223334889999999998665322 49999764
No 81
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=88.17 E-value=0.39 Score=33.87 Aligned_cols=45 Identities=29% Similarity=0.657 Sum_probs=31.4
Q ss_pred ccccccccccccccCCceEEccccceeccccchhhhccCC----CcCccccc
Q 021656 181 SDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHN----SCPVCRQE 228 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~----sCP~CR~~ 228 (309)
.+..|.||.+. ++-+..-.|...||..|+.+-|.... .||.|...
T Consensus 7 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 46789999853 33333334899999999997665432 49999753
No 82
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=88.03 E-value=0.13 Score=35.52 Aligned_cols=47 Identities=30% Similarity=0.743 Sum_probs=32.7
Q ss_pred ccccccccccccccCCceEEccccceeccccchhhhccCC----CcCccccccc
Q 021656 181 SDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHN----SCPVCRQELP 230 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~----sCP~CR~~l~ 230 (309)
.+..|.||... ++-+.--.|...||..|+.+-|.... .||.|.....
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 45789999863 33333334899999999997665432 4999976543
No 83
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=87.92 E-value=0.18 Score=37.54 Aligned_cols=32 Identities=25% Similarity=0.768 Sum_probs=23.6
Q ss_pred cccccccccccccccCCceEEcc---ccceeccccchhh
Q 021656 180 RSDSHCPVCQDKFELGSEARQMP---CNHIYHSDCIVPW 215 (309)
Q Consensus 180 ~~~~~C~IC~~~~~~~~~~~~lp---C~H~fh~~Ci~~W 215 (309)
..+..|.||.. |... .++| |+-+||..|+.+-
T Consensus 13 ~~D~~C~VC~~-~t~~---~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEV-WTAE---SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCC-CCSS---CCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccc-cccc---ceeccccccccccHhhcccc
Confidence 45789999963 3333 3455 8999999999885
No 84
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=87.38 E-value=0.32 Score=41.15 Aligned_cols=46 Identities=30% Similarity=0.694 Sum_probs=32.3
Q ss_pred ccccccccccccccCCceEEccccceeccccchhhhccCC----CcCcccccc
Q 021656 181 SDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHN----SCPVCRQEL 229 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~----sCP~CR~~l 229 (309)
.+..|.||.+. ++-+..-.|...||..|+.+-|.... .||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 45679999843 33233333899999999998876432 499998643
No 85
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=86.74 E-value=0.33 Score=39.53 Aligned_cols=32 Identities=16% Similarity=0.342 Sum_probs=25.8
Q ss_pred CceecccCCCceeecC-----------C----------CccCCCCCCCceEEe
Q 021656 6 NTHWCYRCRRPVRLQG-----------E----------DAVCLYCSGGFVQEL 37 (309)
Q Consensus 6 ~~ywCh~C~r~v~~~~-----------~----------~~~CP~C~~gFvEE~ 37 (309)
..+||..|...+.... . ...||.|++.-++-+
T Consensus 69 ~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~i~ 121 (139)
T 3a43_A 69 AVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFEVV 121 (139)
T ss_dssp CEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEEEE
T ss_pred CcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccEEe
Confidence 5799999999987654 3 578999999987744
No 86
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=86.30 E-value=0.32 Score=32.31 Aligned_cols=44 Identities=32% Similarity=0.639 Sum_probs=28.7
Q ss_pred cccccccccccCCceEEccccceeccccchhhhccCC----CcCcccc
Q 021656 184 HCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHN----SCPVCRQ 227 (309)
Q Consensus 184 ~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~----sCP~CR~ 227 (309)
.|.||...-..++-+.--.|...||..|+.+=|.... .||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 5889986532222233334899999999987555322 4999964
No 87
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=86.21 E-value=0.34 Score=31.97 Aligned_cols=32 Identities=16% Similarity=0.399 Sum_probs=24.2
Q ss_pred CceecccCCCceeecC----CCccCCCCCCCceEEe
Q 021656 6 NTHWCYRCRRPVRLQG----EDAVCLYCSGGFVQEL 37 (309)
Q Consensus 6 ~~ywCh~C~r~v~~~~----~~~~CP~C~~gFvEE~ 37 (309)
+.|-|-.|-+++.... .++.||+|+=-.|..+
T Consensus 2 ~iY~C~rCg~~fs~~el~~lP~IrCpyCGyrii~Kv 37 (48)
T 4ayb_P 2 AVYRCGKCWKTFTDEQLKVLPGVRCPYCGYKIIFMV 37 (48)
T ss_dssp ---CCCCTTTTCCCCCSCCCSSSCCTTTCCSCEECC
T ss_pred cEEEeeccCCCccHHHHhhCCCcccCccCcEEEEEe
Confidence 4689999999997653 7889999998877665
No 88
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=86.19 E-value=0.38 Score=34.61 Aligned_cols=49 Identities=24% Similarity=0.499 Sum_probs=33.1
Q ss_pred ccccccccccccccCCceEE-ccccceeccccchhhhcc----CCCcCccccccc
Q 021656 181 SDSHCPVCQDKFELGSEARQ-MPCNHIYHSDCIVPWLVQ----HNSCPVCRQELP 230 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~~~~~~-lpC~H~fh~~Ci~~Wl~~----~~sCP~CR~~l~ 230 (309)
+...|.||..... ++..+. =.|.--||..|+..-+.. .-.||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 4567999987643 322222 238999999999776543 235999987664
No 89
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=85.65 E-value=0.46 Score=33.06 Aligned_cols=48 Identities=19% Similarity=0.512 Sum_probs=32.5
Q ss_pred cccccccccccccccCCc-eEEccccceeccccchhhhc-----cCCCcCcccc
Q 021656 180 RSDSHCPVCQDKFELGSE-ARQMPCNHIYHSDCIVPWLV-----QHNSCPVCRQ 227 (309)
Q Consensus 180 ~~~~~C~IC~~~~~~~~~-~~~lpC~H~fh~~Ci~~Wl~-----~~~sCP~CR~ 227 (309)
++...|+||...+..+.. +..-.|..-||..|+.--.. ..-.||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 345689999988753332 33334899999999865432 2346999975
No 90
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.16 E-value=0.33 Score=36.69 Aligned_cols=49 Identities=27% Similarity=0.431 Sum_probs=32.4
Q ss_pred ccccccccccccccCCceEEccccceeccccchhhhccCC----CcCcccccc
Q 021656 181 SDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHN----SCPVCRQEL 229 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~----sCP~CR~~l 229 (309)
+...|.||...-....-+..=-|...||..|+.+=|.... .||.|+...
T Consensus 15 ~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~ 67 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAE 67 (92)
T ss_dssp CCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHHH
T ss_pred CCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCcc
Confidence 4568999987533222222333899999999987665432 499997643
No 91
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=85.03 E-value=0.61 Score=36.11 Aligned_cols=47 Identities=26% Similarity=0.552 Sum_probs=30.8
Q ss_pred cccccccccccccccCCceEEccccceeccccchhhhccC----CCcCccc
Q 021656 180 RSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQH----NSCPVCR 226 (309)
Q Consensus 180 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~----~sCP~CR 226 (309)
..+..|.||.+.-+..+-+.--.|...||..||...+... -.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 3567899998653222224444599999999999887531 1366654
No 92
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=84.28 E-value=0.63 Score=34.77 Aligned_cols=51 Identities=24% Similarity=0.587 Sum_probs=33.5
Q ss_pred cccccccccccccc-CCceEEc-cccceeccccchhhhcc--------CCCcCcccccccC
Q 021656 181 SDSHCPVCQDKFEL-GSEARQM-PCNHIYHSDCIVPWLVQ--------HNSCPVCRQELPL 231 (309)
Q Consensus 181 ~~~~C~IC~~~~~~-~~~~~~l-pC~H~fh~~Ci~~Wl~~--------~~sCP~CR~~l~~ 231 (309)
.+..|.||...-.. ...+..- -|...||..|+.+-|.. .=.|+.|+.....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 35689999875322 1222222 38999999999987752 1249999876543
No 93
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=83.95 E-value=0.46 Score=33.21 Aligned_cols=50 Identities=22% Similarity=0.468 Sum_probs=32.8
Q ss_pred ccccccccccccccc--CCceEEccccceeccccchhhhcc-------CCCcCcccccc
Q 021656 180 RSDSHCPVCQDKFEL--GSEARQMPCNHIYHSDCIVPWLVQ-------HNSCPVCRQEL 229 (309)
Q Consensus 180 ~~~~~C~IC~~~~~~--~~~~~~lpC~H~fh~~Ci~~Wl~~-------~~sCP~CR~~l 229 (309)
.++..|.||...... +.-+.--.|...||..|+.+-|.. .=.|+.|....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 345789999976432 222222338999999999986642 12499997644
No 94
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=83.95 E-value=0.44 Score=41.18 Aligned_cols=46 Identities=30% Similarity=0.686 Sum_probs=31.4
Q ss_pred ccccccccccccccCCceEEccccceeccccchhhhccCC----CcCcccccc
Q 021656 181 SDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHN----SCPVCRQEL 229 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~----sCP~CR~~l 229 (309)
.+..|.||... ++-+..=.|...||..|+.+.|.... .||.|+..-
T Consensus 6 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG---GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC---EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC---CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 45789999743 22112222889999999998876432 499998643
No 95
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=79.13 E-value=0.88 Score=33.20 Aligned_cols=25 Identities=36% Similarity=0.825 Sum_probs=19.1
Q ss_pred ccceeccccchhhhccC-----CCcCcccc
Q 021656 203 CNHIYHSDCIVPWLVQH-----NSCPVCRQ 227 (309)
Q Consensus 203 C~H~fh~~Ci~~Wl~~~-----~sCP~CR~ 227 (309)
|...||..|+.+-|... =.||.|+.
T Consensus 47 C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 47 CDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCccCcccCCCcccCCCCCCceECcCccc
Confidence 88999999999877632 25998875
No 96
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=78.91 E-value=1.3 Score=34.32 Aligned_cols=45 Identities=24% Similarity=0.569 Sum_probs=28.9
Q ss_pred cccccccccccc-CCceEEccccceeccccchhhhccCC----CcCcccc
Q 021656 183 SHCPVCQDKFEL-GSEARQMPCNHIYHSDCIVPWLVQHN----SCPVCRQ 227 (309)
Q Consensus 183 ~~C~IC~~~~~~-~~~~~~lpC~H~fh~~Ci~~Wl~~~~----sCP~CR~ 227 (309)
..|.||.+.-.. ++-+.--.|...||..|+.+-|.... .||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 368888754222 22222223899999999988776432 4999974
No 97
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=78.91 E-value=0.96 Score=38.53 Aligned_cols=47 Identities=21% Similarity=0.445 Sum_probs=32.9
Q ss_pred ccccccccccccCCc---eEE-ccccceeccccchhhh------c-----cCCCcCcccccc
Q 021656 183 SHCPVCQDKFELGSE---ARQ-MPCNHIYHSDCIVPWL------V-----QHNSCPVCRQEL 229 (309)
Q Consensus 183 ~~C~IC~~~~~~~~~---~~~-lpC~H~fh~~Ci~~Wl------~-----~~~sCP~CR~~l 229 (309)
..|+||...+..++. .+. --|..-||..|+.--- . ..-.||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 469999999877652 333 3499999999985421 1 145799998643
No 98
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=78.75 E-value=1.4 Score=33.46 Aligned_cols=44 Identities=20% Similarity=0.375 Sum_probs=29.5
Q ss_pred ccccccccccccCCceEEccccceeccccchhhhcc---CCCcCcccc
Q 021656 183 SHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQ---HNSCPVCRQ 227 (309)
Q Consensus 183 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~---~~sCP~CR~ 227 (309)
..| ||......+.-+..-.|.-.||..|+..-+.. .-.||.|+.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 457 88876554443334449999999999764432 236999973
No 99
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=78.73 E-value=0.95 Score=38.59 Aligned_cols=44 Identities=32% Similarity=0.676 Sum_probs=30.9
Q ss_pred cccccccccccccCCceEEccccceeccccchhhhccCC----CcCccccc
Q 021656 182 DSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHN----SCPVCRQE 228 (309)
Q Consensus 182 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~----sCP~CR~~ 228 (309)
+..|.+|.+. ++-+..-.|...||..|+.+=|.... .||.|+..
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4579999843 33333444889999999987665322 49999865
No 100
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=76.87 E-value=1.4 Score=30.99 Aligned_cols=32 Identities=19% Similarity=0.354 Sum_probs=26.6
Q ss_pred CceecccCCCceeecC-CCccCCCCCCCceEEe
Q 021656 6 NTHWCYRCRRPVRLQG-EDAVCLYCSGGFVQEL 37 (309)
Q Consensus 6 ~~ywCh~C~r~v~~~~-~~~~CP~C~~gFvEE~ 37 (309)
-.|-|-.|..+|.+.. ..+.||+|+.-.+...
T Consensus 20 v~Y~C~~Cg~~~~l~~~~~iRC~~CG~RILyK~ 52 (63)
T 3h0g_L 20 MIYLCADCGARNTIQAKEVIRCRECGHRVMYKM 52 (63)
T ss_dssp CCCBCSSSCCBCCCCSSSCCCCSSSCCCCCBCC
T ss_pred eEEECCCCCCeeecCCCCceECCCCCcEEEEEe
Confidence 4588999999998876 5589999999877654
No 101
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.25 E-value=1.7 Score=31.69 Aligned_cols=44 Identities=34% Similarity=0.637 Sum_probs=27.8
Q ss_pred cccccccccccCCceEEccccceeccccchhhhccC-----CCcCcccc
Q 021656 184 HCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQH-----NSCPVCRQ 227 (309)
Q Consensus 184 ~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~-----~sCP~CR~ 227 (309)
.|.||...-..++-+.--.|...||..|+.+=|... =.||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 688888542222222222389999999999766532 24888864
No 102
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=73.75 E-value=1.2 Score=34.29 Aligned_cols=47 Identities=17% Similarity=0.417 Sum_probs=31.9
Q ss_pred ccccccccccccCCceEEc--cccceeccccchhhhc----------cCCCcCcccccc
Q 021656 183 SHCPVCQDKFELGSEARQM--PCNHIYHSDCIVPWLV----------QHNSCPVCRQEL 229 (309)
Q Consensus 183 ~~C~IC~~~~~~~~~~~~l--pC~H~fh~~Ci~~Wl~----------~~~sCP~CR~~l 229 (309)
..|.||...+......+.- .|.--||..|+.--.. ..-.||.|+...
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 4799999987554444433 4889999999853211 234699998753
No 103
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=73.08 E-value=1.7 Score=31.02 Aligned_cols=43 Identities=26% Similarity=0.627 Sum_probs=26.3
Q ss_pred cccccccccccCCceEEc-cccceeccccchhhhccC-----CCcCcccc
Q 021656 184 HCPVCQDKFELGSEARQM-PCNHIYHSDCIVPWLVQH-----NSCPVCRQ 227 (309)
Q Consensus 184 ~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~Wl~~~-----~sCP~CR~ 227 (309)
.|.||...-..+ .+..- .|...||..||.+=|... =.||.|+.
T Consensus 20 ~C~~C~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCC-CEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 466776432222 22222 288999999999766532 24998864
No 104
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=72.17 E-value=2.5 Score=31.15 Aligned_cols=32 Identities=22% Similarity=0.522 Sum_probs=23.8
Q ss_pred CceecccCCCceeecC--CCccCCCCCCCceEEe
Q 021656 6 NTHWCYRCRRPVRLQG--EDAVCLYCSGGFVQEL 37 (309)
Q Consensus 6 ~~ywCh~C~r~v~~~~--~~~~CP~C~~gFvEE~ 37 (309)
..+||-.|...|.... ..++||.|+..|.-.-
T Consensus 24 ~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C 57 (86)
T 2ct7_A 24 KFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRC 57 (86)
T ss_dssp CEECCSSSCCCEECCCSCSCEECTTTCCEECSSS
T ss_pred CEeECcCCCchheecCCCCceEeCCCCCcccccc
Confidence 5679999988775543 3478999998887543
No 105
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=71.02 E-value=1.2 Score=41.96 Aligned_cols=86 Identities=24% Similarity=0.488 Sum_probs=43.7
Q ss_pred chHHHHHHHHhcCCCCCCCcchhhhhc-C---CceeeecccccccccccccccccccCCceEEccccceeccc--cchhh
Q 021656 142 GLEELFEQLSANGRRGPPPAARSAIDA-M---PTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSD--CIVPW 215 (309)
Q Consensus 142 ~l~~l~~~l~~~~~~~~ppa~~~~i~~-l---p~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~--Ci~~W 215 (309)
+.++|+++|...... ++..++..|+. | +...+....+.-...|+|=+..+. ..++-..|.|.=|.+ -+...
T Consensus 172 s~~~Llq~l~~k~~~-~~e~t~~~Ik~~l~~d~DddI~~~~~~vSL~CPlS~~ri~--~P~Rg~~C~HlqCFDl~sfL~~ 248 (360)
T 4fo9_A 172 TSAMLLQRLKMKGIR-NPDHSRALIKEKLTADPDSEIATTSLRVSLMCPLGKMRLT--IPCRAVTCTHLQCFDAALYLQM 248 (360)
T ss_dssp CHHHHHHHHHTC-CB-CHHHHHHHHHHHHC---------CCEEEESBCTTTCSBCS--SEEEETTCCCCCCEEHHHHHHH
T ss_pred CHHHHHHHHHhcCCC-CHHHHHHHHHHHhccCCccceeeeeeEEeeeCCCccceec--cCCcCCCCCCCccCCHHHHHHH
Confidence 678999888753221 11112223332 1 111111112222467999887776 357778899984433 22222
Q ss_pred hccCC--CcCccccccc
Q 021656 216 LVQHN--SCPVCRQELP 230 (309)
Q Consensus 216 l~~~~--sCP~CR~~l~ 230 (309)
..+.. .||+|.+.+.
T Consensus 249 ~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 249 NEKKPTWICPVCDKKAA 265 (360)
T ss_dssp HHHSCCCBCTTTCSBCC
T ss_pred HhhCCCeECCCCCcccC
Confidence 22333 4999998764
No 106
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=70.77 E-value=1.4 Score=41.62 Aligned_cols=47 Identities=26% Similarity=0.674 Sum_probs=30.9
Q ss_pred cccccccccccccCCceEEccccceeccccchhhhc---cCC--CcCcccccccC
Q 021656 182 DSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLV---QHN--SCPVCRQELPL 231 (309)
Q Consensus 182 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~---~~~--sCP~CR~~l~~ 231 (309)
...|+|=+..+. ..++-..|.|.-|.+- ..||. +.. .||+|.+.+..
T Consensus 249 SL~CPlS~~ri~--~PvRg~~C~HlQCFDl-~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 249 SLQCPISYTRMK--YPSKSINCKHLQCFDA-LWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp ESBCTTTSSBCS--SEEEETTCCSSCCEEH-HHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred eecCCCcccccc--ccCcCCcCCCcceECH-HHHHHHhhcCCceeCCCCCcccCH
Confidence 478998887766 4577888999854442 23333 222 49999887643
No 107
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.73 E-value=3.5 Score=29.01 Aligned_cols=40 Identities=23% Similarity=0.615 Sum_probs=30.4
Q ss_pred cccccccccccccCCceEEccccceeccccchhhhccCCCcCcccccccC
Q 021656 182 DSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPL 231 (309)
Q Consensus 182 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~ 231 (309)
...|..|.+.+..++.+. .-+..||..|+ .|-.|+..|..
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~CF--------~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--SLGKDWHKFCL--------KCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--ETTEEEETTTC--------BCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEE--ECCeEeeCCCC--------CCCCCCCccCC
Confidence 357999999887665443 35788999886 58899888864
No 108
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=70.63 E-value=2.8 Score=29.50 Aligned_cols=37 Identities=22% Similarity=0.735 Sum_probs=21.4
Q ss_pred cccccccccccCCceEEccccceeccccchhhhccCCCcCccccccc
Q 021656 184 HCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 230 (309)
Q Consensus 184 ~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~ 230 (309)
.|..|.+.+..++.+..+ +..||..|+ .|-.|+..|.
T Consensus 2 ~C~~C~~~I~~~~~v~a~--~~~~H~~CF--------~C~~C~~~L~ 38 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTSL--GKDWHRPCL--------KCEKCGKTLT 38 (76)
T ss_dssp BCTTTSSBCCGGGEEEET--TEEEETTTC--------BCTTTCCBCC
T ss_pred cCCCCCCEEECceEEEEC--CccccCCCC--------CccccCccCC
Confidence 466676666544433333 667777665 3666666554
No 109
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=70.53 E-value=1.2 Score=31.87 Aligned_cols=49 Identities=22% Similarity=0.420 Sum_probs=30.6
Q ss_pred ccccccccccccc-ccCCceEEc-cccceeccccchhhhccCC--CcCccccc
Q 021656 180 RSDSHCPVCQDKF-ELGSEARQM-PCNHIYHSDCIVPWLVQHN--SCPVCRQE 228 (309)
Q Consensus 180 ~~~~~C~IC~~~~-~~~~~~~~l-pC~H~fh~~Ci~~Wl~~~~--sCP~CR~~ 228 (309)
..+..|.||.+.- ...+.++.- .|.-.||..|+.+-+.-.. .||.|+..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 3567899998653 122222222 3889999999986542222 49888653
No 110
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=69.86 E-value=1.1 Score=35.01 Aligned_cols=47 Identities=23% Similarity=0.456 Sum_probs=30.7
Q ss_pred ccccccccccccCCceEEccccceeccccchhhhccCC----CcCcccccc
Q 021656 183 SHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHN----SCPVCRQEL 229 (309)
Q Consensus 183 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~----sCP~CR~~l 229 (309)
..|.||...-..++-+.--.|...||..|+.+=|.... .||.|+..+
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred CccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 36888876533333233334899999999997665432 399997654
No 111
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=69.84 E-value=0.93 Score=33.87 Aligned_cols=53 Identities=21% Similarity=0.352 Sum_probs=32.6
Q ss_pred cccccccccccccc-cCCceEEc-cccceeccccchhhhccCC--CcCcccccccCC
Q 021656 180 RSDSHCPVCQDKFE-LGSEARQM-PCNHIYHSDCIVPWLVQHN--SCPVCRQELPLQ 232 (309)
Q Consensus 180 ~~~~~C~IC~~~~~-~~~~~~~l-pC~H~fh~~Ci~~Wl~~~~--sCP~CR~~l~~~ 232 (309)
+.+..|.||...-. ..+.++.- .|.-.||..|+.+-+.-.. .||.|......+
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~ 79 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARP 79 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSC
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchh
Confidence 35678999986531 11122222 3888999999986543222 499997755433
No 112
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.92 E-value=4.4 Score=29.06 Aligned_cols=40 Identities=25% Similarity=0.676 Sum_probs=30.4
Q ss_pred ccccccccccccccCCceEEccccceeccccchhhhccCCCcCccccccc
Q 021656 181 SDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 230 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~ 230 (309)
....|..|.+.+..++.+.. -+..||..|+ .|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a--~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA--LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE--TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE--CCcccccccC--------CcCcCCCCcC
Confidence 34679999998876665544 4788999886 5889988775
No 113
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=67.83 E-value=3.1 Score=29.79 Aligned_cols=31 Identities=16% Similarity=0.400 Sum_probs=24.2
Q ss_pred CceecccCCCceeecC-CCccCCCCCCCceEE
Q 021656 6 NTHWCYRCRRPVRLQG-EDAVCLYCSGGFVQE 36 (309)
Q Consensus 6 ~~ywCh~C~r~v~~~~-~~~~CP~C~~gFvEE 36 (309)
-.|-|-.|...+.+.. +.+.||.|+.-.+-.
T Consensus 27 v~Y~C~~CG~~~e~~~~d~irCp~CG~RILyK 58 (70)
T 1twf_L 27 LKYICAECSSKLSLSRTDAVRCKDCGHRILLK 58 (70)
T ss_dssp CCEECSSSCCEECCCTTSTTCCSSSCCCCCBC
T ss_pred EEEECCCCCCcceeCCCCCccCCCCCceEeEe
Confidence 4688999999987765 457899999955443
No 114
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=67.18 E-value=2.8 Score=36.89 Aligned_cols=45 Identities=24% Similarity=0.575 Sum_probs=25.8
Q ss_pred ccccccccccccCCceEEccccceeccccchhhhccC-----CCcCcccc
Q 021656 183 SHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQH-----NSCPVCRQ 227 (309)
Q Consensus 183 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~-----~sCP~CR~ 227 (309)
..|.+|...-..+.-+..=.|...||..|+.+=|... =.||.|+.
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 3688887542222222222489999999999766532 14999965
No 115
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=64.98 E-value=2.7 Score=29.04 Aligned_cols=50 Identities=20% Similarity=0.499 Sum_probs=34.2
Q ss_pred cccccccccccccc-cccCCceEEccccceeccccchhhhccCC----CcCcccc
Q 021656 178 HLRSDSHCPVCQDK-FELGSEARQMPCNHIYHSDCIVPWLVQHN----SCPVCRQ 227 (309)
Q Consensus 178 ~~~~~~~C~IC~~~-~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~----sCP~CR~ 227 (309)
+......|.||+.. |.++-.-...-|.-.|+..|-..|-.+.+ .|-+||+
T Consensus 5 ~~~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 5 QKGDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp CSSCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred ccCCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 33456789999965 55443333444888999999888865444 3888876
No 116
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=63.89 E-value=3.3 Score=31.83 Aligned_cols=45 Identities=24% Similarity=0.463 Sum_probs=27.9
Q ss_pred cccccccccccCCceEEccccceeccccchhhhccCC----CcCccccc
Q 021656 184 HCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHN----SCPVCRQE 228 (309)
Q Consensus 184 ~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~----sCP~CR~~ 228 (309)
.|.||...-....-+.--.|...||..|+.+-|.... .||.|+..
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 5777875432211222223899999999997665422 48888653
No 117
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=63.76 E-value=2.1 Score=32.13 Aligned_cols=45 Identities=16% Similarity=0.364 Sum_probs=24.9
Q ss_pred ccccccccccccccCCceEEcccc---ceeccccchhhhc--cCCCcCc-ccc
Q 021656 181 SDSHCPVCQDKFELGSEARQMPCN---HIYHSDCIVPWLV--QHNSCPV-CRQ 227 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~~~~~~lpC~---H~fh~~Ci~~Wl~--~~~sCP~-CR~ 227 (309)
+...| ||.... .++-+..=.|. .-||..||.--.. ..-.||. |+.
T Consensus 25 ~~~yC-iC~~~~-~g~MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 25 EEVYC-FCRNVS-YGPMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CSCCS-TTTCCC-SSSEECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCcEE-EeCCCC-CCCEEEecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 34567 998642 23322222243 5799999952111 1235999 974
No 118
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.69 E-value=5.6 Score=28.57 Aligned_cols=42 Identities=19% Similarity=0.527 Sum_probs=30.4
Q ss_pred ccccccccccccccCCceEEccccceeccccchhhhccCCCcCcccccccCC
Q 021656 181 SDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQ 232 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~~ 232 (309)
....|..|.+.+...+.+. .-+..||..|+ .|-.|+..|...
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a~~~~wH~~CF--------~C~~C~~~L~~~ 55 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--VNGHFFHRSCF--------RCHTCEATLWPG 55 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--BTTBCCBTTTC--------BCSSSCCBCCTT
T ss_pred CCCCCcccCCCcccceEEE--ECCCeeCCCcC--------EEcCCCCCcCCC
Confidence 3467999999886555443 35788999996 588888877543
No 119
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=61.84 E-value=6.3 Score=26.05 Aligned_cols=43 Identities=19% Similarity=0.306 Sum_probs=27.5
Q ss_pred cccccccccccCCceEE-c-cccceeccccchhhhc----cCCCcCccc
Q 021656 184 HCPVCQDKFELGSEARQ-M-PCNHIYHSDCIVPWLV----QHNSCPVCR 226 (309)
Q Consensus 184 ~C~IC~~~~~~~~~~~~-l-pC~H~fh~~Ci~~Wl~----~~~sCP~CR 226 (309)
.|.||...+..+...+. - .|.--||..|+.--.. ....||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 47888887754443333 2 4888999999854322 345688885
No 120
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=61.45 E-value=8.9 Score=29.60 Aligned_cols=47 Identities=28% Similarity=0.484 Sum_probs=29.6
Q ss_pred cccccccccccccccCCceEEc---cccceeccccchhhhccCC----CcCcccccccCC
Q 021656 180 RSDSHCPVCQDKFELGSEARQM---PCNHIYHSDCIVPWLVQHN----SCPVCRQELPLQ 232 (309)
Q Consensus 180 ~~~~~C~IC~~~~~~~~~~~~l---pC~H~fh~~Ci~~Wl~~~~----sCP~CR~~l~~~ 232 (309)
..+..|.+|.+. + .++.- .|...||..||. |.... .||.|...+..+
T Consensus 13 ~~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 13 MHEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp SSCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 456789999832 3 23333 377899999997 44322 388776555433
No 121
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=60.91 E-value=6.6 Score=27.91 Aligned_cols=45 Identities=27% Similarity=0.586 Sum_probs=26.4
Q ss_pred ccccccccccccccCCceEEcc--cc-ceeccccchhhhccC----CCcCcccccc
Q 021656 181 SDSHCPVCQDKFELGSEARQMP--CN-HIYHSDCIVPWLVQH----NSCPVCRQEL 229 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~~~~~~lp--C~-H~fh~~Ci~~Wl~~~----~sCP~CR~~l 229 (309)
+...| ||.... .++-+..=. |. .-||..||. |... -.||.|+...
T Consensus 15 ~~~~C-~C~~~~-~g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVS-YGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCS-CSSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCC-CCCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 34567 898753 233222222 55 589999997 3322 2599997643
No 122
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=60.18 E-value=3.8 Score=31.83 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=22.8
Q ss_pred ccccccccccc----cC---CceEEccccceeccccchhhh
Q 021656 183 SHCPVCQDKFE----LG---SEARQMPCNHIYHSDCIVPWL 216 (309)
Q Consensus 183 ~~C~IC~~~~~----~~---~~~~~lpC~H~fh~~Ci~~Wl 216 (309)
..|.||+..-. .+ +-+.-..|...||..||..++
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~ 42 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTL 42 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCH
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChh
Confidence 46999987531 11 223334489999999998764
No 123
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=59.46 E-value=5.3 Score=28.25 Aligned_cols=46 Identities=22% Similarity=0.271 Sum_probs=29.9
Q ss_pred cccccccccccccCC-ceEEccccceeccccchhhh----ccCCCcCccccc
Q 021656 182 DSHCPVCQDKFELGS-EARQMPCNHIYHSDCIVPWL----VQHNSCPVCRQE 228 (309)
Q Consensus 182 ~~~C~IC~~~~~~~~-~~~~lpC~H~fh~~Ci~~Wl----~~~~sCP~CR~~ 228 (309)
...| ||......++ .+..-.|..-||..|+.--. .....||.|+..
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 4568 7987654443 23333489999999986532 233469999764
No 124
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=58.53 E-value=5.2 Score=29.22 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=25.3
Q ss_pred ceecccCCCceeecCCCc--cCCCCCCCceEEec
Q 021656 7 THWCYRCRRPVRLQGEDA--VCLYCSGGFVQELD 38 (309)
Q Consensus 7 ~ywCh~C~r~v~~~~~~~--~CP~C~~gFvEE~~ 38 (309)
.-+|..|+.........+ +||.|++-=...+.
T Consensus 37 ~I~CnDC~~~s~v~~h~lg~kC~~C~SyNTr~~~ 70 (79)
T 2k2d_A 37 DILCNDCNGRSTVQFHILGMKCKICESYNTAQAG 70 (79)
T ss_dssp EEEESSSCCEEEEECCTTCCCCTTTSCCCEEESC
T ss_pred EEECCCCCCCccCCceeecccCcCCCCcCeEecC
Confidence 457999999987766555 89999998777663
No 125
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=58.38 E-value=5.5 Score=29.54 Aligned_cols=51 Identities=24% Similarity=0.443 Sum_probs=34.2
Q ss_pred ccccccccccccccCCc-eEEccccceeccccchhhhc-------cCCCcCcccccccC
Q 021656 181 SDSHCPVCQDKFELGSE-ARQMPCNHIYHSDCIVPWLV-------QHNSCPVCRQELPL 231 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~~~-~~~lpC~H~fh~~Ci~~Wl~-------~~~sCP~CR~~l~~ 231 (309)
+...|.+|...|..-.. -..-.|+.+|+..|....+. ....|-.|-..|..
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~ 66 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTR 66 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHH
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHh
Confidence 34579999999965422 22234999999999876442 22358888776643
No 126
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=58.05 E-value=5.6 Score=30.68 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=23.0
Q ss_pred ccccccccccccc------ccCCceEEccccceeccccchh
Q 021656 180 RSDSHCPVCQDKF------ELGSEARQMPCNHIYHSDCIVP 214 (309)
Q Consensus 180 ~~~~~C~IC~~~~------~~~~~~~~lpC~H~fh~~Ci~~ 214 (309)
.....|.+|+..- ..++-+.-..|...||..||..
T Consensus 3 ~p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 3 EPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKF 43 (112)
T ss_dssp CCCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTC
T ss_pred ccCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcC
Confidence 3456899998652 1122333444999999999964
No 127
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.78 E-value=14 Score=26.76 Aligned_cols=39 Identities=15% Similarity=0.539 Sum_probs=29.1
Q ss_pred cccccccccccccCCceEEccccceeccccchhhhccCCCcCcccccccC
Q 021656 182 DSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPL 231 (309)
Q Consensus 182 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~ 231 (309)
...|..|.+.+. ++.+ ..-+..||..|+ .|-.|+..|..
T Consensus 25 ~~~C~~C~~~I~-~~~v--~a~~~~~H~~CF--------~C~~C~~~L~~ 63 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPFL--VALGKSWHPEEF--------NCAHCKNTMAY 63 (90)
T ss_dssp CCBBSSSCCBCC-SCEE--EETTEEECTTTC--------BCSSSCCBCSS
T ss_pred CCCCccCCCEec-ceEE--EECCccccccCC--------ccCCCCCCCCC
Confidence 468999999874 3333 345889999986 68899888864
No 128
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=57.75 E-value=11 Score=27.08 Aligned_cols=47 Identities=17% Similarity=0.481 Sum_probs=29.8
Q ss_pred cccccccccccccCC-ceEEccccceeccccchhhhc-----cCCCcCcccccc
Q 021656 182 DSHCPVCQDKFELGS-EARQMPCNHIYHSDCIVPWLV-----QHNSCPVCRQEL 229 (309)
Q Consensus 182 ~~~C~IC~~~~~~~~-~~~~lpC~H~fh~~Ci~~Wl~-----~~~sCP~CR~~l 229 (309)
...| ||...+.... .+..-.|..-||..|+.--.. ..-.||.|+...
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 3456 9988764322 233334899999999853222 244699998643
No 129
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=57.28 E-value=12 Score=27.95 Aligned_cols=43 Identities=28% Similarity=0.607 Sum_probs=26.1
Q ss_pred cccccccccccccCCceEEcc--cc-ceeccccchhhhcc----CCCcCccccc
Q 021656 182 DSHCPVCQDKFELGSEARQMP--CN-HIYHSDCIVPWLVQ----HNSCPVCRQE 228 (309)
Q Consensus 182 ~~~C~IC~~~~~~~~~~~~lp--C~-H~fh~~Ci~~Wl~~----~~sCP~CR~~ 228 (309)
...| ||..... ++-+..=. |. .-||..||. |.. .-.||.|+..
T Consensus 36 ~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 36 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 4567 9987642 33222223 54 579999996 332 2359999764
No 130
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=57.15 E-value=5 Score=32.16 Aligned_cols=44 Identities=20% Similarity=0.480 Sum_probs=28.4
Q ss_pred cccccccccccccccCCceEE-ccccceeccccchhhhc-----c------CCCcCcccc
Q 021656 180 RSDSHCPVCQDKFELGSEARQ-MPCNHIYHSDCIVPWLV-----Q------HNSCPVCRQ 227 (309)
Q Consensus 180 ~~~~~C~IC~~~~~~~~~~~~-lpC~H~fh~~Ci~~Wl~-----~------~~sCP~CR~ 227 (309)
..+..|.||.+. ..+.. =.|-..||..||.+-+. . .=.|++|+.
T Consensus 55 g~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 345679999753 22222 23889999999997531 1 125999964
No 131
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=56.89 E-value=2.9 Score=44.14 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=41.4
Q ss_pred cccccccccccccCCceEEcccc-ceeccccchhhhccCCCcCcccccccCCC
Q 021656 182 DSHCPVCQDKFELGSEARQMPCN-HIYHSDCIVPWLVQHNSCPVCRQELPLQG 233 (309)
Q Consensus 182 ~~~C~IC~~~~~~~~~~~~lpC~-H~fh~~Ci~~Wl~~~~sCP~CR~~l~~~~ 233 (309)
.-.|+|-++.+.+ .+.+|-| +.|-..+|..||..+.+||+=|.+|....
T Consensus 891 ~F~cPIs~~lM~D---PVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~ 940 (968)
T 3m62_A 891 EFLDPLMYTIMKD---PVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLED 940 (968)
T ss_dssp GGBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred HhCCcchhhHHhC---CeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCccc
Confidence 4679999988864 4889987 68999999999999999999998886543
No 132
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.58 E-value=10 Score=26.81 Aligned_cols=41 Identities=22% Similarity=0.598 Sum_probs=29.5
Q ss_pred ccccccccccccCCceEEccccceeccccchhhhccCCCcCcccccccCC
Q 021656 183 SHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQ 232 (309)
Q Consensus 183 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~~ 232 (309)
..|..|.+.+..++.++. .=+..||..|+ .|-.|++.|...
T Consensus 16 ~~C~~C~~~I~~~~~~~~-a~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVE-YKGTVWHKDCF--------TCSNCKQVIGTG 56 (82)
T ss_dssp CBCSSSCCBCCSSSCEEE-CSSCEEETTTC--------CCSSSCCCCTTS
T ss_pred CcCccCCcccccCceEEE-ECccccccccC--------chhhCCCccCCC
Confidence 579999998876554332 24788999886 588888877543
No 133
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.00 E-value=9.7 Score=26.12 Aligned_cols=40 Identities=23% Similarity=0.547 Sum_probs=28.3
Q ss_pred ccccccccccccCCceEEccccceeccccchhhhccCCCcCcccccccC
Q 021656 183 SHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPL 231 (309)
Q Consensus 183 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~ 231 (309)
..|..|.+.+...+.++. .=+..||..|+ .|-.|...|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~-a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKME-YKGSSWHETCF--------ICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSCEEE-ETTEEEETTTT--------CCSSSCCCCCS
T ss_pred CCCccCCCcccCCceEEE-ECcCeecccCC--------cccccCCccCC
Confidence 479999998876443332 25778999886 58888877753
No 134
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=55.91 E-value=10 Score=27.46 Aligned_cols=41 Identities=17% Similarity=0.388 Sum_probs=29.5
Q ss_pred ccccccccccccccCCceEEccccceeccccchhhhccCCCcCcccccccCC
Q 021656 181 SDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQ 232 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~~ 232 (309)
....|..|.+.+.. +. ...-+..||.+|+ .|-.|...|...
T Consensus 24 ~~~~C~~C~~~I~~-~~--~~a~~~~~H~~CF--------~C~~C~~~L~~~ 64 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AV--VKARDKYRHPECF--------VCADCNLNLKQK 64 (89)
T ss_dssp SCCBCTTTCCBCCS-CC--EESSSCEECTTTC--------CCSSSCCCTTTS
T ss_pred cCCCcccCCCEecc-cE--EEECCceECccCC--------EecCCCCCCCCC
Confidence 45689999988764 22 2336788999986 588898887543
No 135
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=55.90 E-value=5.6 Score=32.39 Aligned_cols=45 Identities=22% Similarity=0.510 Sum_probs=30.3
Q ss_pred cccccccccccccccCCceEEccccceeccccchhhhcc-----------CCCcCcccc
Q 021656 180 RSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQ-----------HNSCPVCRQ 227 (309)
Q Consensus 180 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~-----------~~sCP~CR~ 227 (309)
..+..|.||.+. |+-+..-.|...||..||.+-|.. .=.||+|+.
T Consensus 61 g~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 356789999753 222222248999999999976631 124999974
No 136
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=54.81 E-value=8.4 Score=27.31 Aligned_cols=41 Identities=24% Similarity=0.522 Sum_probs=29.5
Q ss_pred cccccccccccccCCceEEccccceeccccchhhhccCCCcCcccccccCC
Q 021656 182 DSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQ 232 (309)
Q Consensus 182 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~~ 232 (309)
...|..|.+.+..++.+ ..-+..||.+|+ .|-.|.+.|...
T Consensus 7 ~~~C~~C~~~I~~~~~~--~a~~~~~H~~CF--------~C~~C~~~L~~~ 47 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEV--QCDGRSFHRCCF--------LCMVCRKNLDST 47 (81)
T ss_dssp -CBCSSSCCBCSSTTEE--EETTEEEESSSE--------ECSSSCCEECSS
T ss_pred CCcCcCcCccccCceeE--EeCCcccccccC--------ccCCCCCCCCCC
Confidence 35799999988666533 336789999986 488888877543
No 137
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.56 E-value=9.5 Score=26.18 Aligned_cols=40 Identities=28% Similarity=0.560 Sum_probs=28.5
Q ss_pred ccccccccccccCCceEEccccceeccccchhhhccCCCcCcccccccC
Q 021656 183 SHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPL 231 (309)
Q Consensus 183 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~ 231 (309)
..|..|.+.+...+.+ ...-+..||..|+ .|-.|...|..
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 6 SGCSACGETVMPGSRK-LEYGGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CBCSSSCCBCCSSSCE-ECSTTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCCccCCCccccCccE-EEECccccCcccC--------eECCCCCcCCC
Confidence 5799999988754333 3335788999886 58888887754
No 138
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=54.45 E-value=5.7 Score=28.00 Aligned_cols=46 Identities=20% Similarity=0.363 Sum_probs=29.0
Q ss_pred ccccccccccccccCCceEEccccceeccccchhhhc---cCCCcCcccc
Q 021656 181 SDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLV---QHNSCPVCRQ 227 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~---~~~sCP~CR~ 227 (309)
+...| ||......+.-+..-.|..-||..|+.--.. ..-.||.|+.
T Consensus 18 ~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 34568 9987654222333334999999999964332 2346998864
No 139
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=53.00 E-value=5.1 Score=29.49 Aligned_cols=23 Identities=35% Similarity=0.700 Sum_probs=11.8
Q ss_pred ceecccCCCceeecCCCccCCCCCCC
Q 021656 7 THWCYRCRRPVRLQGEDAVCLYCSGG 32 (309)
Q Consensus 7 ~ywCh~C~r~v~~~~~~~~CP~C~~g 32 (309)
.|.|-.|...+... ..||.|+.-
T Consensus 18 ~~~C~~C~~~~~~~---afCPeCgq~ 40 (81)
T 2jrp_A 18 TAHCETCAKDFSLQ---ALCPDCRQP 40 (81)
T ss_dssp EEECTTTCCEEEEE---EECSSSCSC
T ss_pred ceECccccccCCCc---ccCcchhhH
Confidence 34455555555442 266666544
No 140
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=52.67 E-value=5.8 Score=25.91 Aligned_cols=32 Identities=16% Similarity=0.406 Sum_probs=23.1
Q ss_pred CceecccCCC-ceeec--CCCccCCCCCCCceEEe
Q 021656 6 NTHWCYRCRR-PVRLQ--GEDAVCLYCSGGFVQEL 37 (309)
Q Consensus 6 ~~ywCh~C~r-~v~~~--~~~~~CP~C~~gFvEE~ 37 (309)
..+-|-.|.. .+... ..+++|+.|+--|-|++
T Consensus 4 ~~~~CP~C~~~~l~~d~~~gelvC~~CG~v~~e~~ 38 (50)
T 1pft_A 4 KQKVCPACESAELIYDPERGEIVCAKCGYVIEENI 38 (50)
T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESSSCCBCCCCC
T ss_pred ccEeCcCCCCcceEEcCCCCeEECcccCCcccccc
Confidence 3677999987 55443 26799999988776554
No 141
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.28 E-value=14 Score=25.38 Aligned_cols=40 Identities=25% Similarity=0.566 Sum_probs=28.7
Q ss_pred ccccccccccccc--CCceEEccccceeccccchhhhccCCCcCccccccc
Q 021656 182 DSHCPVCQDKFEL--GSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 230 (309)
Q Consensus 182 ~~~C~IC~~~~~~--~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~ 230 (309)
...|..|.+.+.. .+.++. .-+..||.+|+ .|-.|...|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~-a~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYIS-FEERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEE-CSSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceEE-ECCcccCcccC--------EeccCCCcCC
Confidence 3579999988764 223332 35788999986 6888988875
No 142
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=51.68 E-value=12 Score=27.35 Aligned_cols=31 Identities=13% Similarity=0.342 Sum_probs=23.9
Q ss_pred eecccCCCceeecCCCccCCCCCCCceEEecC
Q 021656 8 HWCYRCRRPVRLQGEDAVCLYCSGGFVQELDD 39 (309)
Q Consensus 8 ywCh~C~r~v~~~~~~~~CP~C~~gFvEE~~~ 39 (309)
+.||-|-.... ...-.+||.|+..=+.-+.-
T Consensus 16 LrC~aCf~~t~-~~~k~FCp~CGn~TL~Rvsv 46 (79)
T 2con_A 16 LRCHGCFKTTS-DMNRVFCGHCGNKTLKKVSV 46 (79)
T ss_dssp EECSSSCCEES-CSSCCSCSSSCCSCCEEEEC
T ss_pred eEecccceECC-CcccccccccCcccceEEEE
Confidence 45999988763 24567999999998888743
No 143
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=50.84 E-value=5.4 Score=27.96 Aligned_cols=43 Identities=23% Similarity=0.460 Sum_probs=26.4
Q ss_pred ccccccccccccCCceEEc---cccceeccccchhhh---c-----cCCCcCcccc
Q 021656 183 SHCPVCQDKFELGSEARQM---PCNHIYHSDCIVPWL---V-----QHNSCPVCRQ 227 (309)
Q Consensus 183 ~~C~IC~~~~~~~~~~~~l---pC~H~fh~~Ci~~Wl---~-----~~~sCP~CR~ 227 (309)
..| ||......+. .+.- -|..-||..|+.--- . .+-.||.||.
T Consensus 11 v~C-~C~~~~~~g~-mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDS-MIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSC-EEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCC-EEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 457 8976555443 3333 288899999983211 1 1346999974
No 144
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.78 E-value=14 Score=25.28 Aligned_cols=40 Identities=25% Similarity=0.639 Sum_probs=28.3
Q ss_pred cccccccccccccCCceEEccccceeccccchhhhccCCCcCcccccccCC
Q 021656 182 DSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQ 232 (309)
Q Consensus 182 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~~ 232 (309)
...|..|.+.+. ++.+. .-+..||.+|+ .|-.|+..|...
T Consensus 5 ~~~C~~C~~~I~-~~~~~--a~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFII-GRVIK--AMNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCC-SCCEE--ETTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CCcCccCCCEec-ceEEE--ECcccccccCC--------EeCCCCCcCCCC
Confidence 357999998876 33332 34788999886 588888877644
No 145
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=50.73 E-value=5.6 Score=32.76 Aligned_cols=47 Identities=19% Similarity=0.537 Sum_probs=33.6
Q ss_pred ccccccccccccc--cCCceEEccccceeccccchhhhccCC--CcCccccc
Q 021656 181 SDSHCPVCQDKFE--LGSEARQMPCNHIYHSDCIVPWLVQHN--SCPVCRQE 228 (309)
Q Consensus 181 ~~~~C~IC~~~~~--~~~~~~~lpC~H~fh~~Ci~~Wl~~~~--sCP~CR~~ 228 (309)
.+..|.+|...|. .+......-|.|.+|..|= .|+.... .|-+|++.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHHH
Confidence 4678999999763 3445566669999999997 3554433 38888753
No 146
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.28 E-value=2.7 Score=29.83 Aligned_cols=30 Identities=20% Similarity=0.613 Sum_probs=23.8
Q ss_pred CceecccCCCceeecCCC-ccCCCCCCCceEE
Q 021656 6 NTHWCYRCRRPVRLQGED-AVCLYCSGGFVQE 36 (309)
Q Consensus 6 ~~ywCh~C~r~v~~~~~~-~~CP~C~~gFvEE 36 (309)
....|..|++.|.+...+ +.| +|+.-|.-.
T Consensus 14 ~~~rC~~C~kk~gL~~~egf~C-rCg~~FC~~ 44 (67)
T 1x4w_A 14 SRRRCFQCQTKLELVQQELGSC-RCGYVFCML 44 (67)
T ss_dssp CTTBCSSSCCBCCHHHHHHHCC-SSSCCCCTT
T ss_pred cCCcchhhCCeecccccCceEe-cCCCEehhc
Confidence 346799999999876543 899 999998743
No 147
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.23 E-value=15 Score=25.16 Aligned_cols=39 Identities=23% Similarity=0.638 Sum_probs=27.2
Q ss_pred ccccccccccccCCceEEccccceeccccchhhhccCCCcCccccccc
Q 021656 183 SHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 230 (309)
Q Consensus 183 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~ 230 (309)
..|..|.+.+...+.++ ..=+..||..|+ .|-.|...|.
T Consensus 6 ~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGV-VALDRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CCCSSSCSCCCSSSCCE-ECSSSEECTTTC--------BCSSSCCBCT
T ss_pred CCCccCCCccCCCceEE-EECCCeEcccCC--------cccccCCcCC
Confidence 57999998776433222 224788999886 5888988874
No 148
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=49.99 E-value=5.3 Score=27.30 Aligned_cols=42 Identities=26% Similarity=0.589 Sum_probs=24.8
Q ss_pred cccccccccccccCCceEEcc--cc-ceeccccchhhhcc----CCCcCcccc
Q 021656 182 DSHCPVCQDKFELGSEARQMP--CN-HIYHSDCIVPWLVQ----HNSCPVCRQ 227 (309)
Q Consensus 182 ~~~C~IC~~~~~~~~~~~~lp--C~-H~fh~~Ci~~Wl~~----~~sCP~CR~ 227 (309)
...| ||.... .++-+.-=. |. .-||..|+. |.. .-.||.|+.
T Consensus 9 ~~yC-~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVS-YGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCC-CCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 3456 998753 232222222 55 589999997 332 225999864
No 149
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=49.87 E-value=4.6 Score=31.94 Aligned_cols=48 Identities=15% Similarity=0.386 Sum_probs=31.7
Q ss_pred cccccccccccccCC-ceEEccccceeccccchhhhccCCCcCcccccc
Q 021656 182 DSHCPVCQDKFELGS-EARQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 229 (309)
Q Consensus 182 ~~~C~IC~~~~~~~~-~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l 229 (309)
...|.+|...|..-. +-..-.||.+||..|..........|-.|-..+
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 357999999986432 223345999999999888766667788886543
No 150
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.46 E-value=13 Score=25.85 Aligned_cols=42 Identities=24% Similarity=0.669 Sum_probs=29.6
Q ss_pred cccccccccccccCCceEEccccceeccccchhhhccCCCcCcccccccCC
Q 021656 182 DSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQ 232 (309)
Q Consensus 182 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~~ 232 (309)
...|..|.+.+...+.+.. .-+..||..|+ .|-.|.+.|...
T Consensus 11 ~~~C~~C~~~I~~~~~~~~-a~~~~~H~~CF--------~C~~C~~~L~~~ 52 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQFPEG 52 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEE-ETTEEECTTTC--------CCTTTCCCCGGG
T ss_pred CCCchhcCCccCCCceEEE-eCccEeccccC--------eECCCCCCCCCC
Confidence 4689999998865444432 24778999886 588888777543
No 151
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=49.02 E-value=4.1 Score=29.11 Aligned_cols=45 Identities=20% Similarity=0.435 Sum_probs=29.4
Q ss_pred ccccccccccccCCceEEccccceeccccchhhhc---------cCCCcCccccc
Q 021656 183 SHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLV---------QHNSCPVCRQE 228 (309)
Q Consensus 183 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~---------~~~sCP~CR~~ 228 (309)
..| ||...+..+..+..-.|..-||..|+.--.. ....||.|+..
T Consensus 17 ~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 17 LYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 456 8988765333333334899999999853221 35579999764
No 152
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=49.01 E-value=5.4 Score=29.20 Aligned_cols=50 Identities=18% Similarity=0.358 Sum_probs=32.8
Q ss_pred ccccccccccccccCCc-eEEccccceeccccchhhhc--------cCCCcCccccccc
Q 021656 181 SDSHCPVCQDKFELGSE-ARQMPCNHIYHSDCIVPWLV--------QHNSCPVCRQELP 230 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~~~-~~~lpC~H~fh~~Ci~~Wl~--------~~~sCP~CR~~l~ 230 (309)
+...|.+|...|..-.. -..-.|+.+|+..|....+. ....|-.|-..|.
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~ 78 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALR 78 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHH
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHh
Confidence 34689999999965432 22334999999999876532 1235777765553
No 153
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=48.51 E-value=13 Score=25.21 Aligned_cols=42 Identities=24% Similarity=0.669 Sum_probs=30.2
Q ss_pred cccccccccccccCCceEEccccceeccccchhhhccCCCcCcccccccCC
Q 021656 182 DSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQ 232 (309)
Q Consensus 182 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~~ 232 (309)
...|..|.+.+...+.++. .=+..||..|+ .|-.|.+.|...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEE-ETTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEE-eCcCeeCcCCC--------cccCCCCCCCCC
Confidence 4579999998876554432 35678999887 588888877543
No 154
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=48.14 E-value=7.2 Score=27.22 Aligned_cols=33 Identities=18% Similarity=0.466 Sum_probs=23.5
Q ss_pred ccccccccccccccCCceEEc--cccceeccccch
Q 021656 181 SDSHCPVCQDKFELGSEARQM--PCNHIYHSDCIV 213 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~~~~~~l--pC~H~fh~~Ci~ 213 (309)
....|.+|...+......+.- .|.--||..|+.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 456899999987655444433 589999999984
No 155
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=48.00 E-value=5.8 Score=27.15 Aligned_cols=42 Identities=26% Similarity=0.614 Sum_probs=23.9
Q ss_pred cccccccccccccCCceEEcc--cc-ceeccccchhhhccC----CCcCcccc
Q 021656 182 DSHCPVCQDKFELGSEARQMP--CN-HIYHSDCIVPWLVQH----NSCPVCRQ 227 (309)
Q Consensus 182 ~~~C~IC~~~~~~~~~~~~lp--C~-H~fh~~Ci~~Wl~~~----~sCP~CR~ 227 (309)
...| ||.... .++-+.-=. |. .-||..||. |... -.||.|+.
T Consensus 10 ~~~C-~C~~~~-~g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVS-YGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcC-CCCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 3456 898753 232111112 44 579999997 3322 24998864
No 156
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=47.27 E-value=6.4 Score=28.35 Aligned_cols=47 Identities=23% Similarity=0.482 Sum_probs=30.2
Q ss_pred cccccccccccccCCceEEc--cccceeccccchhhhc---------cCCCcCcccccc
Q 021656 182 DSHCPVCQDKFELGSEARQM--PCNHIYHSDCIVPWLV---------QHNSCPVCRQEL 229 (309)
Q Consensus 182 ~~~C~IC~~~~~~~~~~~~l--pC~H~fh~~Ci~~Wl~---------~~~sCP~CR~~l 229 (309)
...| ||......+..+..- .|..-||..|+.---. ....||.|+..-
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 4567 898774444333333 5989999999853221 245699997643
No 157
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.03 E-value=15 Score=25.53 Aligned_cols=39 Identities=26% Similarity=0.553 Sum_probs=26.9
Q ss_pred cccccccccccc--CCceEEccccceeccccchhhhccCCCcCccccccc
Q 021656 183 SHCPVCQDKFEL--GSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 230 (309)
Q Consensus 183 ~~C~IC~~~~~~--~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~ 230 (309)
..|..|.+.+.. ... .+..-+..||.+|+ .|-.|...|.
T Consensus 6 ~~C~~C~~~I~~~g~~~-~~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAK-FICFQDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCC-EEEETTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCccCCCcccCCCCce-eEEECCcccCcccC--------ChhhCCCcCC
Confidence 479999988764 222 23335788999886 5888887775
No 158
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=46.87 E-value=29 Score=29.73 Aligned_cols=35 Identities=14% Similarity=0.468 Sum_probs=25.3
Q ss_pred cccccccccccccCCc-eEEccccceeccccchhhh
Q 021656 182 DSHCPVCQDKFELGSE-ARQMPCNHIYHSDCIVPWL 216 (309)
Q Consensus 182 ~~~C~IC~~~~~~~~~-~~~lpC~H~fh~~Ci~~Wl 216 (309)
+..|.+|...|..-.. -..-.||++||..|.....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~~ 196 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQC 196 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCee
Confidence 4789999999964332 2233499999999976654
No 159
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=46.81 E-value=4.7 Score=33.37 Aligned_cols=47 Identities=19% Similarity=0.495 Sum_probs=30.2
Q ss_pred ccccccccccccccCCc-eEEccccceeccccchhhhc-----cCCCcCccccc
Q 021656 181 SDSHCPVCQDKFELGSE-ARQMPCNHIYHSDCIVPWLV-----QHNSCPVCRQE 228 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~~~-~~~lpC~H~fh~~Ci~~Wl~-----~~~sCP~CR~~ 228 (309)
+...| ||......+.. +..-.|..-||..|+.--.. ..-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 44678 99887543322 33334899999999853221 23469999864
No 160
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.88 E-value=20 Score=25.19 Aligned_cols=38 Identities=34% Similarity=0.828 Sum_probs=26.9
Q ss_pred ccccccccccccCCceEEccccceeccccchhhhccCCCcCcccccccC
Q 021656 183 SHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPL 231 (309)
Q Consensus 183 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~ 231 (309)
..|..|.+.+. ++.+. .-+..||..|+ .|-.|++.|..
T Consensus 16 ~~C~~C~~~I~-~~~v~--a~~~~wH~~CF--------~C~~C~~~L~~ 53 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVS--ALGKTYHPDCF--------VCAVCRLPFPP 53 (81)
T ss_dssp CBCTTTCCBCC-SCCEE--ETTEEECTTTS--------SCSSSCCCCCS
T ss_pred CcCccccCEec-cceEE--ECCceeCccCC--------ccccCCCCCCC
Confidence 47999998876 33333 35788999886 57788777653
No 161
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.70 E-value=18 Score=24.59 Aligned_cols=38 Identities=24% Similarity=0.603 Sum_probs=27.7
Q ss_pred ccccccccccccCCceEEccccceeccccchhhhccCCCcCcccccccC
Q 021656 183 SHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPL 231 (309)
Q Consensus 183 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~ 231 (309)
..|..|.+.+.. +. +..-+..||..|+ .|-.|+..|..
T Consensus 6 ~~C~~C~~~I~~-~~--~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8z_A 6 SGCVQCKKPITT-GG--VTYREQPWHKECF--------VCTACRKQLSG 43 (70)
T ss_dssp CBCSSSCCBCCS-SE--EESSSSEEETTTS--------BCSSSCCBCTT
T ss_pred CCCcccCCeecc-ce--EEECccccCCCCC--------ccCCCCCcCCc
Confidence 579999988763 32 3335788999886 58889888753
No 162
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=45.70 E-value=10 Score=29.17 Aligned_cols=31 Identities=16% Similarity=0.432 Sum_probs=23.2
Q ss_pred CceecccCCCceeecC-CCccCCCCCCCceEE
Q 021656 6 NTHWCYRCRRPVRLQG-EDAVCLYCSGGFVQE 36 (309)
Q Consensus 6 ~~ywCh~C~r~v~~~~-~~~~CP~C~~gFvEE 36 (309)
..|-|-.|--.+.... .-..||.|.+..||+
T Consensus 66 ~p~~C~~CG~~F~~~~~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 66 KPAQCRKCGFVFKAEINIPSRCPKCKSEWIEE 97 (105)
T ss_dssp CCCBBTTTCCBCCCCSSCCSSCSSSCCCCBCC
T ss_pred ECcChhhCcCeecccCCCCCCCcCCCCCccCC
Confidence 4577999988873222 447899999998876
No 163
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=45.64 E-value=10 Score=30.48 Aligned_cols=48 Identities=17% Similarity=0.428 Sum_probs=32.2
Q ss_pred ccccccccccccc-c-CCceEEccccceeccccchhhhcc-CC---CcCccccc
Q 021656 181 SDSHCPVCQDKFE-L-GSEARQMPCNHIYHSDCIVPWLVQ-HN---SCPVCRQE 228 (309)
Q Consensus 181 ~~~~C~IC~~~~~-~-~~~~~~lpC~H~fh~~Ci~~Wl~~-~~---sCP~CR~~ 228 (309)
....|.+|...|. . +......-|.|.+|..|-..-... +. .|-+|++.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 4578999999983 2 334455559999999997643221 11 38899753
No 164
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.17 E-value=14 Score=26.16 Aligned_cols=40 Identities=25% Similarity=0.532 Sum_probs=28.8
Q ss_pred cccccccccccccCCceEEccccceeccccchhhhccCCCcCcccccccCC
Q 021656 182 DSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQ 232 (309)
Q Consensus 182 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~~ 232 (309)
...|..|.+.+. ++.+ ..-+..||..|+ +|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~-~~~v--~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIID-EQPL--IFKNDPYHPDHF--------NCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCC-SCCC--CCSSSCCCTTTS--------BCSSSCCBCCTT
T ss_pred CCCCccCCCEec-ceEE--EECcceeCCCCC--------EeCCCCCccCCC
Confidence 467999998876 3333 235778998885 688898887643
No 165
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=44.81 E-value=5.9 Score=31.35 Aligned_cols=35 Identities=17% Similarity=0.472 Sum_probs=25.0
Q ss_pred cccccccccccccCCc-eEEccccceeccccchhhh
Q 021656 182 DSHCPVCQDKFELGSE-ARQMPCNHIYHSDCIVPWL 216 (309)
Q Consensus 182 ~~~C~IC~~~~~~~~~-~~~lpC~H~fh~~Ci~~Wl 216 (309)
...|.+|...|..-.. -..-.||++||..|....+
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~~ 104 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNA 104 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCcc
Confidence 4579999999964322 2233499999999976653
No 166
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=44.73 E-value=14 Score=28.81 Aligned_cols=39 Identities=23% Similarity=0.530 Sum_probs=29.0
Q ss_pred cccccccccccccCCceEEccccceeccccchhhhccCCCcCccccccc
Q 021656 182 DSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 230 (309)
Q Consensus 182 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~ 230 (309)
...|..|.+.+.... ++..-+..||..|+ .|-.|+..|.
T Consensus 61 ~~~C~~C~~~I~~~~--~v~a~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRF--LLYAMDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSS--EEEETTEEEETTTS--------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcE--EEEeCCcEEccccc--------CcCcCCCccc
Confidence 367999998876432 23336788999996 6999998885
No 167
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.53 E-value=19 Score=26.11 Aligned_cols=42 Identities=21% Similarity=0.593 Sum_probs=30.5
Q ss_pred ccccccccccccccCCceEEccccceeccccchhhhccCCCcCcccccccCC
Q 021656 181 SDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQ 232 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~~ 232 (309)
....|..|.+.+...+.+ ..-+..||..|+ .|-.|...|...
T Consensus 14 ~~~~C~~C~~~I~~~~~v--~a~~~~~H~~CF--------~C~~C~~~L~~~ 55 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERL--LANQQVFHISCF--------RCSYCNNKLSLG 55 (91)
T ss_dssp SSCBCTTTCCBCCTTSEE--ECSSSEEETTTC--------BCTTTCCBCCTT
T ss_pred CCCcCccCCCccCCceeE--EECCCEECCCCC--------eeCCCCCCCCCC
Confidence 346899999988755433 446788999986 578888777543
No 168
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=44.49 E-value=6.7 Score=27.03 Aligned_cols=43 Identities=26% Similarity=0.468 Sum_probs=27.9
Q ss_pred ccccccccccccCCceEEccccceeccccchhhhccCCCcCcc
Q 021656 183 SHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVC 225 (309)
Q Consensus 183 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~C 225 (309)
..|-.|+..|......+--.|++.|+.+|=.---+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4699999988532112233499999999943333344569987
No 169
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=44.08 E-value=14 Score=26.73 Aligned_cols=48 Identities=25% Similarity=0.623 Sum_probs=30.9
Q ss_pred cccccccccccccCCc-eEEccccceeccccchhhhcc------CCCcCcccccc
Q 021656 182 DSHCPVCQDKFELGSE-ARQMPCNHIYHSDCIVPWLVQ------HNSCPVCRQEL 229 (309)
Q Consensus 182 ~~~C~IC~~~~~~~~~-~~~lpC~H~fh~~Ci~~Wl~~------~~sCP~CR~~l 229 (309)
...|.+|...|..-.. -..-.||.+|+..|....+.. ...|-.|-..|
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 73 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLL 73 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHT
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHH
Confidence 4579999999974322 223349999999998765421 12466665544
No 170
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=43.99 E-value=9.7 Score=27.67 Aligned_cols=33 Identities=24% Similarity=0.597 Sum_probs=23.2
Q ss_pred CCCCceecccCCCceeecC------------CCccCCCCCCCceE
Q 021656 3 SGRNTHWCYRCRRPVRLQG------------EDAVCLYCSGGFVQ 35 (309)
Q Consensus 3 s~~~~ywCh~C~r~v~~~~------------~~~~CP~C~~gFvE 35 (309)
+....|-|..|.+...... ..+.|+.|+..|..
T Consensus 24 ~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~ 68 (85)
T 2lv2_A 24 ASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYS 68 (85)
T ss_dssp CCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESS
T ss_pred CCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCC
Confidence 3446788999988775432 23689999988854
No 171
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=43.05 E-value=7.9 Score=27.94 Aligned_cols=28 Identities=21% Similarity=0.614 Sum_probs=22.6
Q ss_pred CceecccCCCceeecCCCccCCCCCCCceEE
Q 021656 6 NTHWCYRCRRPVRLQGEDAVCLYCSGGFVQE 36 (309)
Q Consensus 6 ~~ywCh~C~r~v~~~~~~~~CP~C~~gFvEE 36 (309)
..-.|..|++.|.+. .+.| +|+.-|.-.
T Consensus 24 ~~~RC~~C~kkvgL~--~f~C-rCg~~FCs~ 51 (74)
T 1wfp_A 24 TATRCLSCNKKVGVT--GFKC-RCGSTFCGT 51 (74)
T ss_dssp CCCBCSSSCCBCTTT--CEEC-TTSCEECTT
T ss_pred cCccchhhcCccccc--ceEe-ccCCEeccc
Confidence 346799999998775 7899 899998744
No 172
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=42.93 E-value=19 Score=24.20 Aligned_cols=38 Identities=18% Similarity=0.465 Sum_probs=28.1
Q ss_pred ccccccccccccCCceEEccccceeccccchhhhccCCCcCcccccccC
Q 021656 183 SHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPL 231 (309)
Q Consensus 183 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~ 231 (309)
..|..|.+.+. ++ ....-+..||..|+ .|-.|+..|..
T Consensus 6 ~~C~~C~~~I~-~~--~~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE-GR--VVNAMGKQWHVEHF--------VCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC-SC--EECCTTSBEETTTC--------BCTTTCCBCSS
T ss_pred CCCcccCCEec-ce--EEEECccccccCcC--------EECCCCCCCCC
Confidence 57999998886 43 23345788999886 58899888753
No 173
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=42.91 E-value=7.6 Score=27.24 Aligned_cols=28 Identities=21% Similarity=0.662 Sum_probs=22.4
Q ss_pred CceecccCCCceeecCCCccCCCCCCCceEE
Q 021656 6 NTHWCYRCRRPVRLQGEDAVCLYCSGGFVQE 36 (309)
Q Consensus 6 ~~ywCh~C~r~v~~~~~~~~CP~C~~gFvEE 36 (309)
..-.|..|++.|.+. .+.| +|+.-|.-.
T Consensus 14 ~~~rC~~C~kkvgl~--~f~C-rCg~~FC~~ 41 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVM--GFKC-KCGSTFCGS 41 (64)
T ss_dssp CSCSCTTTCCCCTTS--CEEC-TTSCEECSS
T ss_pred cCCcChhhCCccccc--CeEe-ecCCEeccc
Confidence 345799999998764 6899 999998754
No 174
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.88 E-value=15 Score=25.80 Aligned_cols=38 Identities=21% Similarity=0.546 Sum_probs=27.1
Q ss_pred ccccccccccccCCceEEccccceeccccchhhhccCCCcCcccccccC
Q 021656 183 SHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPL 231 (309)
Q Consensus 183 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~ 231 (309)
..|..|.+.+. +..+ ..-+..||..|+ .|-.|...|..
T Consensus 16 ~~C~~C~~~I~-~~~~--~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (81)
T 1x6a_A 16 EFCHGCSLLMT-GPFM--VAGEFKYHPECF--------ACMSCKVIIED 53 (81)
T ss_dssp CBCTTTCCBCC-SCCB--CCTTCCBCTTSC--------BCTTTCCBCCT
T ss_pred CcCccCCCCcC-ceEE--EECCceeccccC--------CccCCCCccCC
Confidence 47999998876 3332 234788998886 58889888753
No 175
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=42.80 E-value=10 Score=29.35 Aligned_cols=28 Identities=18% Similarity=0.606 Sum_probs=16.4
Q ss_pred cccccccccccCCceEEccccceeccccc
Q 021656 184 HCPVCQDKFELGSEARQMPCNHIYHSDCI 212 (309)
Q Consensus 184 ~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci 212 (309)
.|..|.+.+...+.++.. -+..||..|+
T Consensus 10 ~C~~C~~~I~~~e~~~~a-~~~~~H~~CF 37 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRV-KDKVYHLECF 37 (123)
T ss_dssp CCSSSSCCCCTTCCCCCC-SSCCCCTTTC
T ss_pred cccCCCCeecCCceEEEE-CCcccccccC
Confidence 588887776543333221 3667777774
No 176
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=42.70 E-value=35 Score=29.48 Aligned_cols=48 Identities=19% Similarity=0.531 Sum_probs=32.4
Q ss_pred cccccccccccccCCc-eEEccccceeccccchhhhcc--------CCCcCcccccc
Q 021656 182 DSHCPVCQDKFELGSE-ARQMPCNHIYHSDCIVPWLVQ--------HNSCPVCRQEL 229 (309)
Q Consensus 182 ~~~C~IC~~~~~~~~~-~~~lpC~H~fh~~Ci~~Wl~~--------~~sCP~CR~~l 229 (309)
...|.+|...|..-.. -..-.||++||..|-...+.. ...|-.|-..|
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l 220 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQL 220 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHH
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHh
Confidence 4689999999975422 223349999999998765431 23577776555
No 177
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=42.26 E-value=18 Score=25.71 Aligned_cols=32 Identities=16% Similarity=0.316 Sum_probs=23.0
Q ss_pred CCCCCCceecccCCCceeec-----------------CCCccCCCCCCC
Q 021656 1 MSSGRNTHWCYRCRRPVRLQ-----------------GEDAVCLYCSGG 32 (309)
Q Consensus 1 mss~~~~ywCh~C~r~v~~~-----------------~~~~~CP~C~~g 32 (309)
|+-.+..|-|-.|-=..... ..+.+||.|+.+
T Consensus 1 m~~~m~~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 1 MEIDEGKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP 49 (70)
T ss_dssp CBCCSSCEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred CCCCCceEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCC
Confidence 66777889999998554421 145699999974
No 178
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.26 E-value=17 Score=25.63 Aligned_cols=39 Identities=18% Similarity=0.326 Sum_probs=28.3
Q ss_pred ccccccccccccccCCceEEccccceeccccchhhhccCCCcCccccccc
Q 021656 181 SDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 230 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~ 230 (309)
....|..|.+.+.. + .+..-+..||..|+ .|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~-~--~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVG-V--FVKLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCS-S--CEECSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCccccCCCCccC-c--EEEECcceeCcCcC--------eeCCCCCCCC
Confidence 34689999988764 3 23335789999986 5888888774
No 179
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=41.78 E-value=13 Score=27.51 Aligned_cols=48 Identities=21% Similarity=0.477 Sum_probs=32.7
Q ss_pred cccccccccccccCCc-eEEccccceeccccchhhhcc------CCCcCcccccc
Q 021656 182 DSHCPVCQDKFELGSE-ARQMPCNHIYHSDCIVPWLVQ------HNSCPVCRQEL 229 (309)
Q Consensus 182 ~~~C~IC~~~~~~~~~-~~~lpC~H~fh~~Ci~~Wl~~------~~sCP~CR~~l 229 (309)
...|.+|...|..-.. -..-.||++|+..|...++.. ...|-.|-..|
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 74 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETI 74 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHH
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHH
Confidence 4579999999865332 223349999999998776531 23477776555
No 180
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=41.74 E-value=7.1 Score=22.97 Aligned_cols=28 Identities=14% Similarity=0.450 Sum_probs=19.2
Q ss_pred ccccccccccccCCceEEccccceeccccc
Q 021656 183 SHCPVCQDKFELGSEARQMPCNHIYHSDCI 212 (309)
Q Consensus 183 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci 212 (309)
..|+.|...+-..+.+. .=+..||..|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--CLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--SSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE--ECCeEecccCC
Confidence 46999988775554333 34788998884
No 181
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=41.72 E-value=9.9 Score=27.78 Aligned_cols=43 Identities=26% Similarity=0.594 Sum_probs=27.0
Q ss_pred cccccccccc--CCceEEcc-ccceeccccchhhhccCC--CcCcccc
Q 021656 185 CPVCQDKFEL--GSEARQMP-CNHIYHSDCIVPWLVQHN--SCPVCRQ 227 (309)
Q Consensus 185 C~IC~~~~~~--~~~~~~lp-C~H~fh~~Ci~~Wl~~~~--sCP~CR~ 227 (309)
|+-|...+.. +...+.-| |++.||..|-.+|=+.|. +|..-++
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~ 75 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQN 75 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHH
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCchhhcCCCCChHHHHH
Confidence 6656544322 12234555 999999999999955554 5665543
No 182
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=41.22 E-value=7.1 Score=29.70 Aligned_cols=29 Identities=17% Similarity=0.386 Sum_probs=17.9
Q ss_pred ecccCCCceeecCCCccCCCCCCCceEEe
Q 021656 9 WCYRCRRPVRLQGEDAVCLYCSGGFVQEL 37 (309)
Q Consensus 9 wCh~C~r~v~~~~~~~~CP~C~~gFvEE~ 37 (309)
.|-.|+.++......+.|..|+..|..+-
T Consensus 34 ~CP~Cq~eL~~~g~~~hC~~C~~~f~~~a 62 (101)
T 2jne_A 34 HCPQCQHVLDQDNGHARCRSCGEFIEMKA 62 (101)
T ss_dssp BCSSSCSBEEEETTEEEETTTCCEEEEEE
T ss_pred cCccCCCcceecCCEEECccccchhhccc
Confidence 47777777665444445777766666554
No 183
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=40.99 E-value=13 Score=25.98 Aligned_cols=28 Identities=29% Similarity=0.679 Sum_probs=22.6
Q ss_pred CceecccCCCceeecCCCccCCCCCCCceEE
Q 021656 6 NTHWCYRCRRPVRLQGEDAVCLYCSGGFVQE 36 (309)
Q Consensus 6 ~~ywCh~C~r~v~~~~~~~~CP~C~~gFvEE 36 (309)
..-.|..|++.|.+. .+.| +|+.-|.-.
T Consensus 14 ~~~rC~~C~kkvgl~--~f~C-rCg~~FC~~ 41 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLT--GFMC-RCGTTFCGS 41 (64)
T ss_dssp SCCCCTTTCCCCCTT--CEEC-SSSCEECTT
T ss_pred cCCcChhhCCccCcc--CEEe-ecCCEeccc
Confidence 457899999998765 7899 899988743
No 184
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=39.99 E-value=16 Score=24.95 Aligned_cols=37 Identities=24% Similarity=0.621 Sum_probs=25.7
Q ss_pred ccccccccccccCCceEEcc-----ccceeccccchhhhccC
Q 021656 183 SHCPVCQDKFELGSEARQMP-----CNHIYHSDCIVPWLVQH 219 (309)
Q Consensus 183 ~~C~IC~~~~~~~~~~~~lp-----C~H~fh~~Ci~~Wl~~~ 219 (309)
..|+-|...++..+....|. |++.|+..|..+|-...
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 56888887776544333222 78999999999987543
No 185
>2b9d_A E7 protein; zinc finger, homodimer, transcription, viral protein; 1.60A {Human papillomavirus type 1A} SCOP: g.91.1.1
Probab=39.03 E-value=12 Score=25.03 Aligned_cols=22 Identities=36% Similarity=0.733 Sum_probs=17.9
Q ss_pred cccCCCceeecC-----------------CCccCCCCCC
Q 021656 10 CYRCRRPVRLQG-----------------EDAVCLYCSG 31 (309)
Q Consensus 10 Ch~C~r~v~~~~-----------------~~~~CP~C~~ 31 (309)
|+.|++.|++.. -+++||.|..
T Consensus 11 C~~C~~~lrl~V~at~~~IR~lqqLLl~~L~lvCp~Ca~ 49 (52)
T 2b9d_A 11 CAYCEKLVRLTVLADHSAIRQLEEMLLRSLNIVCPLCTL 49 (52)
T ss_dssp CTTTCCEEEEEEEECHHHHHHHHHHHHHTCCCCCTTTTT
T ss_pred CCCCCCeEEEEEEeCchhHHHHHHHhhCCceEECcchhc
Confidence 999999998753 2589999974
No 186
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=38.69 E-value=18 Score=25.52 Aligned_cols=30 Identities=20% Similarity=0.613 Sum_probs=23.9
Q ss_pred ccccccccccccccCCceEEccc-cceeccccchh
Q 021656 181 SDSHCPVCQDKFELGSEARQMPC-NHIYHSDCIVP 214 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~~~~~~lpC-~H~fh~~Ci~~ 214 (309)
+..-|.||.++ ..++.+-| +-+||..|...
T Consensus 7 e~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE 37 (67)
T 2d8v_A 7 GLPWCCICNED----ATLRCAGCDGDLYCARCFRE 37 (67)
T ss_dssp CCSSCTTTCSC----CCEEETTTTSEEECSSHHHH
T ss_pred CCCeeEEeCCC----CeEEecCCCCceehHHHHHH
Confidence 45679999887 35788889 88999999655
No 187
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=38.34 E-value=13 Score=26.31 Aligned_cols=34 Identities=18% Similarity=0.328 Sum_probs=23.7
Q ss_pred CCCCCceecccCCCceeecC------------CCccCCCCCCCceE
Q 021656 2 SSGRNTHWCYRCRRPVRLQG------------EDAVCLYCSGGFVQ 35 (309)
Q Consensus 2 ss~~~~ywCh~C~r~v~~~~------------~~~~CP~C~~gFvE 35 (309)
+++...|-|..|.+...... ..+.|+.|+..|..
T Consensus 3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 48 (96)
T 2dmd_A 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAAD 48 (96)
T ss_dssp CCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESS
T ss_pred CCCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCC
Confidence 44457889999998765321 24689999887753
No 188
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=38.15 E-value=14 Score=28.16 Aligned_cols=28 Identities=25% Similarity=0.560 Sum_probs=19.7
Q ss_pred CceecccCCCceeecCCCccCCCCCCCceEEe
Q 021656 6 NTHWCYRCRRPVRLQGEDAVCLYCSGGFVQEL 37 (309)
Q Consensus 6 ~~ywCh~C~r~v~~~~~~~~CP~C~~gFvEE~ 37 (309)
.+|.|-.|+..+.. ...||.|+.. +|.|
T Consensus 47 ~~~hC~~C~~~f~~---~a~CPdC~q~-LevL 74 (101)
T 2jne_A 47 GHARCRSCGEFIEM---KALCPDCHQP-LQVL 74 (101)
T ss_dssp TEEEETTTCCEEEE---EEECTTTCSB-CEEE
T ss_pred CEEECccccchhhc---cccCcchhhH-HHHH
Confidence 45669999987755 5788888865 3444
No 189
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=37.99 E-value=16 Score=25.76 Aligned_cols=34 Identities=26% Similarity=0.354 Sum_probs=24.4
Q ss_pred CCCCCceecccCCCceeecC------------CCccCCCCCCCceE
Q 021656 2 SSGRNTHWCYRCRRPVRLQG------------EDAVCLYCSGGFVQ 35 (309)
Q Consensus 2 ss~~~~ywCh~C~r~v~~~~------------~~~~CP~C~~gFvE 35 (309)
|++...|-|..|.+...... ..+.|+.|+..|..
T Consensus 2 s~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 47 (95)
T 2yt9_A 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKR 47 (95)
T ss_dssp CCCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESC
T ss_pred CCCCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCC
Confidence 44557899999998875432 23689999987753
No 190
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.86 E-value=21 Score=24.15 Aligned_cols=37 Identities=24% Similarity=0.624 Sum_probs=27.2
Q ss_pred ccccccccccccCCceEEccccceeccccchhhhccCCCcCccccccc
Q 021656 183 SHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 230 (309)
Q Consensus 183 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~ 230 (309)
..|..|.+.+.. +.+. .-+..||.+|+ .|-.|...|.
T Consensus 6 ~~C~~C~~~I~~-~~~~--a~~~~~H~~CF--------~C~~C~~~L~ 42 (69)
T 2cur_A 6 SGCVKCNKAITS-GGIT--YQDQPWHADCF--------VCVTCSKKLA 42 (69)
T ss_dssp CCCSSSCCCCCT-TCEE--ETTEEECTTTT--------BCTTTCCBCT
T ss_pred CCCcccCCEeCc-ceEE--ECccccccCcC--------EECCCCCCCC
Confidence 579999988753 3333 35788999886 5888988875
No 191
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=37.45 E-value=29 Score=23.93 Aligned_cols=40 Identities=23% Similarity=0.502 Sum_probs=28.0
Q ss_pred cccccccccccc---CCceEEccccceeccccchhhhccCCCcCcccccccC
Q 021656 183 SHCPVCQDKFEL---GSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPL 231 (309)
Q Consensus 183 ~~C~IC~~~~~~---~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~ 231 (309)
..|+.|.+.+.. ... ....=+..||..|+ .|-.|...|..
T Consensus 16 ~~C~~C~~~I~~~g~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~ 58 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSS-VVAYEGQSWHDYCF--------HCKKCSVNLAN 58 (77)
T ss_dssp CCCSSSCCCCCCCSSCCC-EEEETTEEEETTTC--------BCSSSCCBCTT
T ss_pred ccCcccCCcccCCCCCce-eEEECcceeCcccC--------EehhcCCCCCC
Confidence 579999988763 222 22234788999886 58999888853
No 192
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=36.89 E-value=12 Score=25.86 Aligned_cols=44 Identities=23% Similarity=0.516 Sum_probs=24.7
Q ss_pred cccccccccccccCCceEEcc--cc-ceeccccchhhhc--cCCCcCcccc
Q 021656 182 DSHCPVCQDKFELGSEARQMP--CN-HIYHSDCIVPWLV--QHNSCPVCRQ 227 (309)
Q Consensus 182 ~~~C~IC~~~~~~~~~~~~lp--C~-H~fh~~Ci~~Wl~--~~~sCP~CR~ 227 (309)
...| ||.... .++-+.-=. |. .-||..||.---. ..-.||.|+.
T Consensus 11 ~~yC-~C~~~~-~g~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVS-YGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCC-CCCeeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 3456 998753 232122122 44 7899999962111 1225999965
No 193
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=36.76 E-value=13 Score=25.07 Aligned_cols=30 Identities=20% Similarity=0.481 Sum_probs=23.5
Q ss_pred CceecccCCCceeecC------------CCccCCCCCCCceE
Q 021656 6 NTHWCYRCRRPVRLQG------------EDAVCLYCSGGFVQ 35 (309)
Q Consensus 6 ~~ywCh~C~r~v~~~~------------~~~~CP~C~~gFvE 35 (309)
..|-|-.|.+...... .-+.|+.|+..|..
T Consensus 3 Kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~ 44 (60)
T 4gzn_C 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRD 44 (60)
T ss_dssp CCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESS
T ss_pred CCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCC
Confidence 5799999999886532 24799999999864
No 194
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.62 E-value=30 Score=24.24 Aligned_cols=39 Identities=23% Similarity=0.560 Sum_probs=27.9
Q ss_pred cccccccccccccCCceEEccccceeccccchhhhccCCCcCcccccccC
Q 021656 182 DSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPL 231 (309)
Q Consensus 182 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~ 231 (309)
...|..|.+.+. +.. +..-+..||..|+ +|-.|...|..
T Consensus 15 ~~~C~~C~~~I~-~~~--~~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (81)
T 2dlo_A 15 LEKCATCSQPIL-DRI--LRAMGKAYHPGCF--------TCVVCHRGLDG 53 (81)
T ss_dssp CCBCTTTCCBCC-SCC--EEETTEEECTTTC--------BCSSSCCBCTT
T ss_pred CCccccCCCeec-cee--EEECCccccHHhc--------CcccCCCccCC
Confidence 357999998876 332 2235788999886 58899888753
No 195
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=35.72 E-value=16 Score=26.00 Aligned_cols=20 Identities=20% Similarity=0.574 Sum_probs=15.6
Q ss_pred ecccCCCceeecCCCccCCCCCCC
Q 021656 9 WCYRCRRPVRLQGEDAVCLYCSGG 32 (309)
Q Consensus 9 wCh~C~r~v~~~~~~~~CP~C~~g 32 (309)
=|-.|.+-| .+-.||.|++.
T Consensus 13 AC~~C~~~~----~~~~CPnC~s~ 32 (69)
T 1ryq_A 13 ACRHCHYIT----SEDRCPVCGSR 32 (69)
T ss_dssp EETTTCBEE----SSSSCTTTCCC
T ss_pred hHHhCCccc----cCCcCCCccCC
Confidence 388999843 67799999964
No 196
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=34.81 E-value=28 Score=22.83 Aligned_cols=33 Identities=12% Similarity=0.287 Sum_probs=24.2
Q ss_pred CceecccCCCceeec---------CCCccCCCCCCCceEEec
Q 021656 6 NTHWCYRCRRPVRLQ---------GEDAVCLYCSGGFVQELD 38 (309)
Q Consensus 6 ~~ywCh~C~r~v~~~---------~~~~~CP~C~~gFvEE~~ 38 (309)
..|-|..|....... ...+.|+.|+..|...-.
T Consensus 13 k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~~~~~ 54 (62)
T 1vd4_A 13 ASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDES 54 (62)
T ss_dssp SEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEECTT
T ss_pred CCccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccccCcc
Confidence 578899999865321 134799999999987653
No 197
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.71 E-value=25 Score=25.43 Aligned_cols=34 Identities=18% Similarity=0.358 Sum_probs=23.9
Q ss_pred cccccccccccccCCc-eEEccccceeccccchhh
Q 021656 182 DSHCPVCQDKFELGSE-ARQMPCNHIYHSDCIVPW 215 (309)
Q Consensus 182 ~~~C~IC~~~~~~~~~-~~~lpC~H~fh~~Ci~~W 215 (309)
...|.+|...|..-.. -..-.|+.+|+..|....
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 4689999999964321 222349999999997553
No 198
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=33.31 E-value=12 Score=23.60 Aligned_cols=30 Identities=20% Similarity=0.383 Sum_probs=20.4
Q ss_pred CceecccCCCceeecC------------CCccCCCCCCCceE
Q 021656 6 NTHWCYRCRRPVRLQG------------EDAVCLYCSGGFVQ 35 (309)
Q Consensus 6 ~~ywCh~C~r~v~~~~------------~~~~CP~C~~gFvE 35 (309)
..|-|..|.+...... ..+.|+.|+..|..
T Consensus 3 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 44 (57)
T 3uk3_C 3 SSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQ 44 (57)
T ss_dssp --CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESS
T ss_pred CCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCC
Confidence 4688999988765321 24789999988753
No 199
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=33.08 E-value=31 Score=28.66 Aligned_cols=40 Identities=20% Similarity=0.575 Sum_probs=27.8
Q ss_pred cccccccccccccCCceEEccccceeccccchhhhccCCCcCcccccccC
Q 021656 182 DSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPL 231 (309)
Q Consensus 182 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~ 231 (309)
...|..|.+.+...+.+.. =+..||.+|+ .|-.|+..|..
T Consensus 115 ~~~C~~C~~~I~~~~~v~a--~~~~~H~~CF--------~C~~C~~~L~~ 154 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVIG--AGKSWHKSCF--------RCAKCGKSLES 154 (192)
T ss_dssp CEECTTTSCEECSSSCEEE--TTEEECTTTC--------BCTTTCCBCCS
T ss_pred CCcCCCCCCEecCcEEEec--CCCccchhcC--------CccccCCCCCC
Confidence 4579999888765554443 4778888885 57777776643
No 200
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.40 E-value=31 Score=24.02 Aligned_cols=37 Identities=19% Similarity=0.608 Sum_probs=27.0
Q ss_pred ccccccccccccCCceEEccccceeccccchhhhccCCCcCccccccc
Q 021656 183 SHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 230 (309)
Q Consensus 183 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~ 230 (309)
..|..|.+.+.. +. +..=+..||..|+ .|-.|+..|.
T Consensus 16 ~~C~~C~~~I~~-~~--v~a~~~~~H~~CF--------~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQ-GG--VTYRDQPWHRECL--------VCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCS-CC--EESSSSEECTTTC--------BCSSSCCBCT
T ss_pred CcCCCCCCEecC-cE--EEECCchhhhhhC--------CcccCCCcCC
Confidence 579999988754 32 3345788999886 5888988884
No 201
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=32.20 E-value=24 Score=25.86 Aligned_cols=30 Identities=23% Similarity=0.527 Sum_probs=24.9
Q ss_pred eecccCCCceeecCCCccCCCCCCCceEEe
Q 021656 8 HWCYRCRRPVRLQGEDAVCLYCSGGFVQEL 37 (309)
Q Consensus 8 ywCh~C~r~v~~~~~~~~CP~C~~gFvEE~ 37 (309)
..|-.|..++........|+.|+..|..+-
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~C~~~~~~~a 32 (81)
T 2jrp_A 3 ITCPVCHHALERNGDTAHCETCAKDFSLQA 32 (81)
T ss_dssp CCCSSSCSCCEECSSEEECTTTCCEEEEEE
T ss_pred CCCCCCCCccccCCCceECccccccCCCcc
Confidence 459999999987666667999999988776
No 202
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=32.16 E-value=19 Score=24.18 Aligned_cols=32 Identities=25% Similarity=0.586 Sum_probs=21.5
Q ss_pred CCCceecccCCCceeecC------------CCccCCCCCCCceE
Q 021656 4 GRNTHWCYRCRRPVRLQG------------EDAVCLYCSGGFVQ 35 (309)
Q Consensus 4 ~~~~ywCh~C~r~v~~~~------------~~~~CP~C~~gFvE 35 (309)
+...|-|..|.+...... ..+.|+.|+..|..
T Consensus 14 ~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 14 SDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp CCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESC
T ss_pred CCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCC
Confidence 346788888888765321 23688888887753
No 203
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=31.70 E-value=26 Score=24.68 Aligned_cols=34 Identities=18% Similarity=0.455 Sum_probs=23.9
Q ss_pred ccccccccccccCCc-eEEccccceeccccchhhh
Q 021656 183 SHCPVCQDKFELGSE-ARQMPCNHIYHSDCIVPWL 216 (309)
Q Consensus 183 ~~C~IC~~~~~~~~~-~~~lpC~H~fh~~Ci~~Wl 216 (309)
..|.+|...|..-.. -.--.||.+|+..|....+
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~~ 46 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSI 46 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEEE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCeE
Confidence 579999999864321 2223499999999976543
No 204
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=31.45 E-value=19 Score=23.52 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=24.6
Q ss_pred ccccccccCCceEEccccceeccccchhhhc---cCCCcCcccc
Q 021656 187 VCQDKFELGSEARQMPCNHIYHSDCIVPWLV---QHNSCPVCRQ 227 (309)
Q Consensus 187 IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~---~~~sCP~CR~ 227 (309)
||......+.-+.--.|..-||..|+.--.. ..-.||.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6766543222233334889999999864322 3346998864
No 205
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=31.13 E-value=43 Score=24.35 Aligned_cols=10 Identities=20% Similarity=0.650 Sum_probs=4.8
Q ss_pred cccccccccc
Q 021656 184 HCPVCQDKFE 193 (309)
Q Consensus 184 ~C~IC~~~~~ 193 (309)
.|..|.+.+.
T Consensus 7 ~C~~C~~~I~ 16 (101)
T 2cup_A 7 GCVECRKPIG 16 (101)
T ss_dssp BCSSSCCBCC
T ss_pred cCcccCCccc
Confidence 4555554443
No 206
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.05 E-value=31 Score=24.15 Aligned_cols=39 Identities=23% Similarity=0.542 Sum_probs=26.3
Q ss_pred ccccccccccccCCceEEccccceeccccchhhhccCCCcCccccccc
Q 021656 183 SHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 230 (309)
Q Consensus 183 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~ 230 (309)
..|..|.+.+...+.++. .=+..||..|+ .|-.|...|.
T Consensus 16 ~~C~~C~~~I~~~~~~~~-a~~~~~H~~CF--------~C~~C~~~L~ 54 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELF-YEDRHFHEGCF--------RCCRCQRSLA 54 (82)
T ss_dssp CBCTTTCCBCCSSCCBCC-CSSCCCBTTTS--------BCTTTCCBCS
T ss_pred CcCccCCCccccCcEEEE-eCCccccccCC--------eecCCCCccC
Confidence 479999888763332222 24678888886 5888888775
No 207
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=30.61 E-value=25 Score=23.71 Aligned_cols=23 Identities=30% Similarity=0.783 Sum_probs=19.2
Q ss_pred CceecccCCCceeecCCCccCCCCC
Q 021656 6 NTHWCYRCRRPVRLQGEDAVCLYCS 30 (309)
Q Consensus 6 ~~ywCh~C~r~v~~~~~~~~CP~C~ 30 (309)
..-||..|...| ..+.+.|-.|+
T Consensus 21 ~pt~C~~C~~~i--~kqg~kC~~C~ 43 (59)
T 1rfh_A 21 GPGWCDLCGREV--LRQALRCANCK 43 (59)
T ss_dssp CCEECTTTCSEE--CSCCEECTTTS
T ss_pred CCeEchhcchhh--hhCccEeCCCC
Confidence 567999999998 56889998886
No 208
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=30.53 E-value=24 Score=24.90 Aligned_cols=23 Identities=30% Similarity=0.783 Sum_probs=19.1
Q ss_pred CceecccCCCceeecCCCccCCCCC
Q 021656 6 NTHWCYRCRRPVRLQGEDAVCLYCS 30 (309)
Q Consensus 6 ~~ywCh~C~r~v~~~~~~~~CP~C~ 30 (309)
..-||..|...+ ..+.+.|-.|+
T Consensus 34 ~pt~C~~C~~~l--~~qG~kC~~C~ 56 (72)
T 2fnf_X 34 GPGWCDLCGREV--LRQALRCANCK 56 (72)
T ss_dssp SCCBCTTTSSBC--SSCCEECTTSS
T ss_pred CCcchhhhhHHH--HhCcCccCCCC
Confidence 456899999998 56889999885
No 209
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=29.98 E-value=19 Score=26.62 Aligned_cols=28 Identities=21% Similarity=0.650 Sum_probs=22.1
Q ss_pred ceecccCCCceeecCCCccCCCCCCCceEE
Q 021656 7 THWCYRCRRPVRLQGEDAVCLYCSGGFVQE 36 (309)
Q Consensus 7 ~ywCh~C~r~v~~~~~~~~CP~C~~gFvEE 36 (309)
.-.|+.|++.|.+. ..+.| +|+.-|.-.
T Consensus 25 ~~rC~~C~kkvgl~-~~f~C-rCg~~FC~~ 52 (85)
T 1wff_A 25 MKHCFLCGKKTGLA-TSFEC-RCGNNFCAS 52 (85)
T ss_dssp CCBCSSSCCBCSSS-SCEEC-TTCCEECTT
T ss_pred CccchhhCCeeccc-CCeEc-CCCCEeccc
Confidence 46799999998764 46899 699988744
No 210
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=29.80 E-value=24 Score=26.95 Aligned_cols=18 Identities=22% Similarity=0.433 Sum_probs=13.7
Q ss_pred CCCCCceecccCCCceee
Q 021656 2 SSGRNTHWCYRCRRPVRL 19 (309)
Q Consensus 2 ss~~~~ywCh~C~r~v~~ 19 (309)
+.+....|||.|+..|..
T Consensus 70 ~~~~~~vwcY~cd~~V~~ 87 (102)
T 2ida_A 70 DPPEGWGWCYVDEVMFDL 87 (102)
T ss_dssp SSCSCEEEETTTTEEEEC
T ss_pred ecCCCCEEEcCCCcEEEC
Confidence 344578999999998854
No 211
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.73 E-value=36 Score=23.62 Aligned_cols=39 Identities=15% Similarity=0.460 Sum_probs=28.0
Q ss_pred ccccccccccccCCceEEccccceeccccchhhhccCCCcCcccccccCC
Q 021656 183 SHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQ 232 (309)
Q Consensus 183 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~~ 232 (309)
..|..|.+.+.. +.+ ..-+..||..|+ .|-.|+..|...
T Consensus 16 ~~C~~C~~~I~~-~~v--~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NYL--SAMDTVWHPECF--------VCGDCFTSFSTG 54 (80)
T ss_dssp CBCTTTCCBCCS-SCE--EETTEEECTTTC--------BCSSSCCBSCSS
T ss_pred CccccCCCeecc-eeE--EECCCeEecCcC--------ChhhCCCCCCCC
Confidence 579999988764 333 234678999886 588998888543
No 212
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=29.67 E-value=43 Score=22.37 Aligned_cols=40 Identities=20% Similarity=0.488 Sum_probs=27.9
Q ss_pred ccccccccccccCCceEEccccceec--cccchhhhccCCCcCcccccccC
Q 021656 183 SHCPVCQDKFELGSEARQMPCNHIYH--SDCIVPWLVQHNSCPVCRQELPL 231 (309)
Q Consensus 183 ~~C~IC~~~~~~~~~~~~lpC~H~fh--~~Ci~~Wl~~~~sCP~CR~~l~~ 231 (309)
..|..|.+.+..++.. +..-+..|| .+|+ +|-.|+..|..
T Consensus 3 ~~C~~C~~~I~~~~~~-v~a~~~~wH~~~~CF--------~C~~C~~~L~~ 44 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQR-VTYNNFSWHASTECF--------LCSCCSKCLIG 44 (65)
T ss_dssp EECTTTSSEECTTSCE-EEETTEEEETTTTTS--------BCTTTCCBCTT
T ss_pred CCCcCCCCeeccCceE-EEECCCccCCCCCCE--------ECCCCCCcCCC
Confidence 3689999887753222 223478899 8886 68889888753
No 213
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=29.50 E-value=25 Score=27.02 Aligned_cols=48 Identities=10% Similarity=0.090 Sum_probs=28.8
Q ss_pred cccccccccccc-CCceEEccccceeccccchhhhccCCCcCcccccccC
Q 021656 183 SHCPVCQDKFEL-GSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPL 231 (309)
Q Consensus 183 ~~C~IC~~~~~~-~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~ 231 (309)
..|..|...+.. +.. -...=+..||..|...-+.....|-.|...|..
T Consensus 33 F~C~~C~~~L~~~~~~-~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTS-SYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HCCSSSCCCTTTSEEC-CEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCcCCCCCcccccCCe-EEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 567777766641 111 112245667777776655444479999887764
No 214
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=29.37 E-value=40 Score=25.72 Aligned_cols=46 Identities=15% Similarity=0.221 Sum_probs=27.8
Q ss_pred cccccccccccccCCceEEccccceeccccchhhhccCCCcCcccccccC
Q 021656 182 DSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPL 231 (309)
Q Consensus 182 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~ 231 (309)
-..|..|...+... .....=+..||..|...- -...|..|.+.|..
T Consensus 30 CF~C~~C~~~L~~~--~f~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 30 HFCCFDCDSILAGE--IYVMVNDKPVCKPCYVKN--HAVVCQGCHNAIDP 75 (126)
T ss_dssp GSBCTTTCCBCTTS--EEEEETTEEEEHHHHHHH--SCCBCTTTCSBCCT
T ss_pred CCCcCCCCCCCCcC--EEEeECCEEechHHhCcC--cCccCcccCCcCCc
Confidence 35777887766432 122234566777776442 34569999888864
No 215
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=29.19 E-value=73 Score=23.74 Aligned_cols=50 Identities=20% Similarity=0.420 Sum_probs=33.7
Q ss_pred cccccccccccccCCc----eEEccccceeccccchhhhc-cCCCcCcccccccC
Q 021656 182 DSHCPVCQDKFELGSE----ARQMPCNHIYHSDCIVPWLV-QHNSCPVCRQELPL 231 (309)
Q Consensus 182 ~~~C~IC~~~~~~~~~----~~~lpC~H~fh~~Ci~~Wl~-~~~sCP~CR~~l~~ 231 (309)
...|.||-+++..... +...-|.--.|..|+.-=.+ .++.||-|+.....
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 4689999998754332 22233777788888855443 45679999887753
No 216
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=28.88 E-value=25 Score=23.27 Aligned_cols=31 Identities=23% Similarity=0.390 Sum_probs=22.1
Q ss_pred CCceecccCCCceeecC------------CCccCCCCCCCceE
Q 021656 5 RNTHWCYRCRRPVRLQG------------EDAVCLYCSGGFVQ 35 (309)
Q Consensus 5 ~~~ywCh~C~r~v~~~~------------~~~~CP~C~~gFvE 35 (309)
...|-|..|.+...... ..+.|+.|+..|..
T Consensus 7 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~ 49 (70)
T 1x5w_A 7 GHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQ 49 (70)
T ss_dssp CCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESS
T ss_pred CCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCC
Confidence 36789999998764321 23789999988753
No 217
>2ewl_A Protein E7; HPV, oncoprotein, zinc binding, virus-viral protein COMP; NMR {Human papillomavirus} SCOP: g.91.1.1 PDB: 2f8b_A
Probab=28.76 E-value=11 Score=25.61 Aligned_cols=21 Identities=29% Similarity=0.823 Sum_probs=16.8
Q ss_pred cccCCCceeecC-----------------CCccCCCCC
Q 021656 10 CYRCRRPVRLQG-----------------EDAVCLYCS 30 (309)
Q Consensus 10 Ch~C~r~v~~~~-----------------~~~~CP~C~ 30 (309)
|+.|++.|++.. -.++||.|.
T Consensus 16 C~~C~~~lRl~V~at~~~IR~lqqLLl~~L~lvCp~Ca 53 (56)
T 2ewl_A 16 CCKCDGRIELTVESSAEDLRTLQQLFLSTLSFVCPWCA 53 (56)
T ss_dssp BTTTCCEEEEEEECCHHHHHHHHHHHHHTCCBCCHHHH
T ss_pred CCCCCCeEEEEEEeCchhHHHHHHHhhCCceEECcccc
Confidence 999999998753 257899884
No 218
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=28.73 E-value=23 Score=23.73 Aligned_cols=30 Identities=23% Similarity=0.520 Sum_probs=21.2
Q ss_pred CceecccCCCceeecC------------CCccCCCCCCCceE
Q 021656 6 NTHWCYRCRRPVRLQG------------EDAVCLYCSGGFVQ 35 (309)
Q Consensus 6 ~~ywCh~C~r~v~~~~------------~~~~CP~C~~gFvE 35 (309)
..|-|..|.+...... ..+.|+.|+..|..
T Consensus 13 k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~ 54 (72)
T 1x6e_A 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQ 54 (72)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESS
T ss_pred CCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCC
Confidence 5688999988764321 34689999887753
No 219
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=28.65 E-value=43 Score=27.78 Aligned_cols=40 Identities=28% Similarity=0.654 Sum_probs=26.4
Q ss_pred cccccccccccccCCceEEccccceeccccchhhhccCCCcCcccccccC
Q 021656 182 DSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPL 231 (309)
Q Consensus 182 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~ 231 (309)
...|..|.+.+..++.+. .-+..||..|+ .|-.|+..|..
T Consensus 7 ~~~C~~C~~~I~~~~~v~--a~g~~wH~~CF--------~C~~C~~~L~~ 46 (192)
T 1b8t_A 7 GKKCGVCQKAVYFAEEVQ--CEGSSFHKSCF--------LCMVCKKNLDS 46 (192)
T ss_dssp CEECTTTCCEECSSCCEE--ETTEEECTTTC--------BCTTTCCBCCS
T ss_pred CCcCccCCCeecceeEEE--eCCceecCCCC--------cCcccCCcCCC
Confidence 457888888876555443 35778888886 46666665543
No 220
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=27.90 E-value=33 Score=25.19 Aligned_cols=36 Identities=19% Similarity=0.385 Sum_probs=27.7
Q ss_pred cccccccccccccCCceEEcc--ccceeccccchhhhcc
Q 021656 182 DSHCPVCQDKFELGSEARQMP--CNHIYHSDCIVPWLVQ 218 (309)
Q Consensus 182 ~~~C~IC~~~~~~~~~~~~lp--C~H~fh~~Ci~~Wl~~ 218 (309)
...|.+|.+.++.. .-++.| =.|.||..|-...+++
T Consensus 15 ~l~CtlC~erLEdt-HFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 15 PLCCTICHERLEDT-HFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCCSSSCSCCSST-TSEECSSCSSCEECHHHHHHHHHH
T ss_pred eeEeecchhhhccC-ceeeCCCccCCeeeccccHHHHHh
Confidence 46899999998764 444444 3799999999888874
No 221
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=27.78 E-value=22 Score=18.27 Aligned_cols=11 Identities=27% Similarity=0.579 Sum_probs=8.4
Q ss_pred ccCCCCCCCce
Q 021656 24 AVCLYCSGGFV 34 (309)
Q Consensus 24 ~~CP~C~~gFv 34 (309)
+.|+.|+..|.
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 2m0e_A 3 HKCPHCDKKFN 13 (29)
T ss_dssp CCCSSCCCCCC
T ss_pred CcCCCCCcccC
Confidence 57888888774
No 222
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=27.56 E-value=17 Score=22.82 Aligned_cols=28 Identities=21% Similarity=0.475 Sum_probs=19.2
Q ss_pred eecccCCCceeecC------------CCccCCCCCCCceE
Q 021656 8 HWCYRCRRPVRLQG------------EDAVCLYCSGGFVQ 35 (309)
Q Consensus 8 ywCh~C~r~v~~~~------------~~~~CP~C~~gFvE 35 (309)
|-|..|........ ..+.|+.|+..|..
T Consensus 2 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 41 (57)
T 1bbo_A 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKT 41 (57)
T ss_dssp CBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESS
T ss_pred CcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcC
Confidence 67888887764321 23689999988753
No 223
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.15 E-value=28 Score=24.10 Aligned_cols=37 Identities=24% Similarity=0.497 Sum_probs=24.4
Q ss_pred ccccccccccccCCceEEccccceeccccchhhhccCCCcCccccccc
Q 021656 183 SHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 230 (309)
Q Consensus 183 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~ 230 (309)
..|.-|...+.. +. +..-+..||.+|+ .|-.|...|.
T Consensus 6 ~~C~~C~~~I~~-~~--v~a~~~~wH~~CF--------~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG-RV--LEAGEKHYHPSCA--------LCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS-CC--BCCSSCCBCTTTS--------CCSSSCCCCC
T ss_pred CCcccCCCEecC-ee--EEeCCCCCCCCcC--------EeCCCCCCCC
Confidence 468888887653 22 2335678888885 4777777664
No 224
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=26.86 E-value=17 Score=21.21 Aligned_cols=12 Identities=33% Similarity=0.827 Sum_probs=8.5
Q ss_pred CCcCcccccccC
Q 021656 220 NSCPVCRQELPL 231 (309)
Q Consensus 220 ~sCP~CR~~l~~ 231 (309)
.+||+|+..++.
T Consensus 4 ~~CpvCk~q~Pd 15 (28)
T 2jvx_A 4 FCCPKCQYQAPD 15 (28)
T ss_dssp EECTTSSCEESS
T ss_pred ccCccccccCcC
Confidence 368888877654
No 225
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=26.63 E-value=17 Score=29.13 Aligned_cols=14 Identities=21% Similarity=0.501 Sum_probs=6.7
Q ss_pred ccCCCCCCCceEEe
Q 021656 24 AVCLYCSGGFVQEL 37 (309)
Q Consensus 24 ~~CP~C~~gFvEE~ 37 (309)
+.||.|++.++.|.
T Consensus 28 P~CP~C~seytYeD 41 (138)
T 2akl_A 28 PPCPQCNSEYTYED 41 (138)
T ss_dssp CCCTTTCCCCCEEC
T ss_pred CCCCCCCCcceEec
Confidence 34555555554443
No 226
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=26.36 E-value=22 Score=25.59 Aligned_cols=27 Identities=30% Similarity=0.674 Sum_probs=21.1
Q ss_pred ceecccCCCceeecCCCccCCCCCCCceEE
Q 021656 7 THWCYRCRRPVRLQGEDAVCLYCSGGFVQE 36 (309)
Q Consensus 7 ~ywCh~C~r~v~~~~~~~~CP~C~~gFvEE 36 (309)
...|..|++.|.+. .+.|. |+.-|.-.
T Consensus 25 ~nRC~~CrKkvgL~--gf~Cr-Cg~~FCs~ 51 (74)
T 1wfl_A 25 KNRCFMCRKKVGLT--GFDCR-CGNLFCGL 51 (74)
T ss_dssp TTBCSSSCCBCGGG--CEECT-TSCEECSS
T ss_pred CCcChhhCCccccc--CeecC-CCCEechh
Confidence 35799999998775 58997 99887643
No 227
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=26.24 E-value=28 Score=25.54 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=22.9
Q ss_pred CCCCCceecccCCCceeecC------------CCccCCCCCCCce
Q 021656 2 SSGRNTHWCYRCRRPVRLQG------------EDAVCLYCSGGFV 34 (309)
Q Consensus 2 ss~~~~ywCh~C~r~v~~~~------------~~~~CP~C~~gFv 34 (309)
|++...|-|..|........ ..+.|+.|+..|.
T Consensus 2 s~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 46 (124)
T 2dlq_A 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYF 46 (124)
T ss_dssp CCCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCS
T ss_pred CCCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhc
Confidence 34557888999988764321 2468999988764
No 228
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=26.01 E-value=21 Score=26.16 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=19.8
Q ss_pred CceecccCCCceeecC--CCccCCCCCCCce
Q 021656 6 NTHWCYRCRRPVRLQG--EDAVCLYCSGGFV 34 (309)
Q Consensus 6 ~~ywCh~C~r~v~~~~--~~~~CP~C~~gFv 34 (309)
..|-|-.|-....... .-..|++|+..|.
T Consensus 26 ~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 26 EDHACPNCGEDRVDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp SCEECSSSCCEEEEEEETTEEEETTTCCEEE
T ss_pred ccCcCCCCCCcceeccCCCeEECCCCCCEec
Confidence 4688999988654332 4468999987643
No 229
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=25.66 E-value=25 Score=18.19 Aligned_cols=12 Identities=33% Similarity=0.827 Sum_probs=9.0
Q ss_pred ccCCCCCCCceE
Q 021656 24 AVCLYCSGGFVQ 35 (309)
Q Consensus 24 ~~CP~C~~gFvE 35 (309)
+.|+.|+..|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 578888887753
No 230
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=25.45 E-value=37 Score=25.65 Aligned_cols=38 Identities=26% Similarity=0.563 Sum_probs=21.8
Q ss_pred ccccccccccccCCceEEccccceeccccchhhhccCCCcCccccccc
Q 021656 183 SHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 230 (309)
Q Consensus 183 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~ 230 (309)
..|.-|.+.+.... .+..-+..||..|+ .|-.|+..|.
T Consensus 4 ~~C~~C~~~I~~~~--~~~a~~~~wH~~CF--------~C~~C~~~L~ 41 (114)
T 1j2o_A 4 LTCGGCQQNIGDRY--FLKAIDQYWHEDCL--------SCDLCGCRLG 41 (114)
T ss_dssp BCBSSSCSCBCSSE--EEECSSSEECTTTC--------CCSSSCSCCC
T ss_pred CCCcCCCCeeCCcE--EEEECchhHHHhcC--------cccccCCchh
Confidence 45777777665321 12224667777765 4666666554
No 231
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=25.37 E-value=52 Score=21.28 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=18.4
Q ss_pred CCceecccCCCceeec----------CCCccCCCCCCC
Q 021656 5 RNTHWCYRCRRPVRLQ----------GEDAVCLYCSGG 32 (309)
Q Consensus 5 ~~~ywCh~C~r~v~~~----------~~~~~CP~C~~g 32 (309)
+..|-|-.|-=..... ..+.+||.|+.+
T Consensus 2 m~~y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 2 MQKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp CCCEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred CCEEECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCc
Confidence 3567788887544321 135699999875
No 232
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=25.26 E-value=28 Score=24.49 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=15.3
Q ss_pred chhhhccCCCcCcccccccCC
Q 021656 212 IVPWLVQHNSCPVCRQELPLQ 232 (309)
Q Consensus 212 i~~Wl~~~~sCP~CR~~l~~~ 232 (309)
+++||..--.||+|+..|...
T Consensus 3 md~~LLeiL~CP~ck~~L~~~ 23 (67)
T 2jny_A 3 LDPQLLEVLACPKDKGPLRYL 23 (67)
T ss_dssp SCGGGTCCCBCTTTCCBCEEE
T ss_pred CCHHHHHHhCCCCCCCcCeEe
Confidence 456777777899998877543
No 233
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=24.62 E-value=23 Score=22.53 Aligned_cols=28 Identities=25% Similarity=0.520 Sum_probs=19.2
Q ss_pred ceecccCCCceeecC------------CCccCCCCCCCce
Q 021656 7 THWCYRCRRPVRLQG------------EDAVCLYCSGGFV 34 (309)
Q Consensus 7 ~ywCh~C~r~v~~~~------------~~~~CP~C~~gFv 34 (309)
.|-|..|.+...... ..+.|+.|+..|.
T Consensus 2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 41 (60)
T 2adr_A 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFT 41 (60)
T ss_dssp CBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEES
T ss_pred cCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccC
Confidence 477888887764321 2368999988774
No 234
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=24.43 E-value=28 Score=28.79 Aligned_cols=34 Identities=18% Similarity=0.413 Sum_probs=24.2
Q ss_pred ccccccccccccccCCceEEc---cccceeccccchhhhcc
Q 021656 181 SDSHCPVCQDKFELGSEARQM---PCNHIYHSDCIVPWLVQ 218 (309)
Q Consensus 181 ~~~~C~IC~~~~~~~~~~~~l---pC~H~fh~~Ci~~Wl~~ 218 (309)
.+..|.||-+. ..+..- .|...||..||..++..
T Consensus 78 ~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 78 YQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp SBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 45679999743 333333 38899999999998864
No 235
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=24.15 E-value=45 Score=20.87 Aligned_cols=29 Identities=14% Similarity=0.240 Sum_probs=20.7
Q ss_pred CceecccCCCceeec-----------C--CCccCCCCCCCce
Q 021656 6 NTHWCYRCRRPVRLQ-----------G--EDAVCLYCSGGFV 34 (309)
Q Consensus 6 ~~ywCh~C~r~v~~~-----------~--~~~~CP~C~~gFv 34 (309)
..|-|..|.+..... . ..+.|+.|+..|-
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~ 52 (54)
T 2eps_A 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52 (54)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred CCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCC
Confidence 668899998765321 1 2368999999884
No 236
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=24.15 E-value=48 Score=27.38 Aligned_cols=28 Identities=18% Similarity=0.522 Sum_probs=17.3
Q ss_pred cccccccccccCCceEEccccceeccccc
Q 021656 184 HCPVCQDKFELGSEARQMPCNHIYHSDCI 212 (309)
Q Consensus 184 ~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci 212 (309)
.|..|.+.+...+.++ ..-++.||..|+
T Consensus 71 ~C~~C~~~I~~~e~~i-~a~~~~~H~~CF 98 (188)
T 1rut_X 71 ACSACGQSIPASELVM-RAQGNVYHLKCF 98 (188)
T ss_dssp ECTTTCCEECTTSEEE-EETTEEECGGGC
T ss_pred ccccCCCccccCcEEE-EcCCCEEeCCCC
Confidence 5888887765433222 224677887774
No 237
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=23.80 E-value=29 Score=17.59 Aligned_cols=12 Identities=33% Similarity=0.733 Sum_probs=8.1
Q ss_pred ccCCCCCCCceE
Q 021656 24 AVCLYCSGGFVQ 35 (309)
Q Consensus 24 ~~CP~C~~gFvE 35 (309)
+.|+.|+..|..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 468888877643
No 238
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=23.50 E-value=24 Score=23.77 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=15.4
Q ss_pred chhhhccCCCcCcccccccCC
Q 021656 212 IVPWLVQHNSCPVCRQELPLQ 232 (309)
Q Consensus 212 i~~Wl~~~~sCP~CR~~l~~~ 232 (309)
+++||..--.||+|+..|..+
T Consensus 3 ~d~~lL~iL~CP~c~~~L~~~ 23 (56)
T 2kpi_A 3 LEAGLLEILACPACHAPLEER 23 (56)
T ss_dssp CCCSCTTSCCCSSSCSCEEEE
T ss_pred CCHHHHhheeCCCCCCcceec
Confidence 456777777899999887543
No 239
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=23.45 E-value=59 Score=21.78 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=17.3
Q ss_pred CceecccCCCceeec-----------------CCCccCCCCCCC
Q 021656 6 NTHWCYRCRRPVRLQ-----------------GEDAVCLYCSGG 32 (309)
Q Consensus 6 ~~ywCh~C~r~v~~~-----------------~~~~~CP~C~~g 32 (309)
+.|-|-.|-=..... ..+.+||.|+.+
T Consensus 2 ~~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 2 RKWQCVVCGFIYDEALGLPEEGIPAGTRWEDIPADWVCPDCGVG 45 (55)
T ss_dssp CEEEETTTCCEEETTTCBTTTTBCTTCCGGGSCTTCCCTTTCCC
T ss_pred CcEEeCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 467788887544431 145689999874
No 240
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=22.88 E-value=38 Score=24.02 Aligned_cols=15 Identities=27% Similarity=0.671 Sum_probs=11.1
Q ss_pred CccCCCCCCC-ceEEe
Q 021656 23 DAVCLYCSGG-FVQEL 37 (309)
Q Consensus 23 ~~~CP~C~~g-FvEE~ 37 (309)
.++||.|+++ +++..
T Consensus 2 ~m~Cp~Cg~~~l~~~~ 17 (78)
T 3ga8_A 2 HMKCPVCHQGEMVSGI 17 (78)
T ss_dssp -CBCTTTSSSBEEEEE
T ss_pred ceECCCCCCCeeEeEE
Confidence 3689999987 66555
No 241
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=22.72 E-value=55 Score=26.45 Aligned_cols=46 Identities=15% Similarity=0.308 Sum_probs=26.2
Q ss_pred cccccccccccccCCceEEccccceeccccchhhhccCCCcCcccccccCC
Q 021656 182 DSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQ 232 (309)
Q Consensus 182 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~~ 232 (309)
-..|..|...+.... . .-=+..||..|...- -...|..|...|...
T Consensus 33 CF~C~~C~~~L~~~~--f-~~~g~~yC~~~y~~~--f~~~C~~C~~~I~~~ 78 (169)
T 2rgt_A 33 CLKCSDCHVPLAERC--F-SRGESVYCKDDFFKR--FGTKCAACQLGIPPT 78 (169)
T ss_dssp TSBCTTTCCBCCSCC--E-ESSSCEECHHHHHHH--HSCBCTTTCCBCCTT
T ss_pred cCccCCCCCcCCCCC--c-ccCCeeeeccccccc--ccccccccccccCCC
Confidence 356777776664331 1 123455666665442 235688898877643
No 242
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=22.67 E-value=29 Score=24.51 Aligned_cols=20 Identities=30% Similarity=0.647 Sum_probs=13.6
Q ss_pred hhhhccCCCcCcccccccCC
Q 021656 213 VPWLVQHNSCPVCRQELPLQ 232 (309)
Q Consensus 213 ~~Wl~~~~sCP~CR~~l~~~ 232 (309)
++||..--.||+|+..|...
T Consensus 2 d~~LLeiL~CP~ck~~L~~~ 21 (69)
T 2pk7_A 2 DTKLLDILACPICKGPLKLS 21 (69)
T ss_dssp -CCGGGTCCCTTTCCCCEEC
T ss_pred ChHHHhheeCCCCCCcCeEe
Confidence 45666666799998877543
No 243
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=22.53 E-value=25 Score=26.87 Aligned_cols=45 Identities=22% Similarity=0.375 Sum_probs=25.1
Q ss_pred cccccccccccCCceEE-ccccceeccccchhhhcc--------CCCcCccccc
Q 021656 184 HCPVCQDKFELGSEARQ-MPCNHIYHSDCIVPWLVQ--------HNSCPVCRQE 228 (309)
Q Consensus 184 ~C~IC~~~~~~~~~~~~-lpC~H~fh~~Ci~~Wl~~--------~~sCP~CR~~ 228 (309)
.|..|......+..++. --|...||..|+...... ...||.|+..
T Consensus 61 ~c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 61 EVDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQE 114 (117)
T ss_dssp CBCCHHHHCCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC--
T ss_pred cccccccccccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCC
Confidence 34445444333333333 339999999998754321 1349999753
No 244
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=22.52 E-value=24 Score=18.19 Aligned_cols=11 Identities=18% Similarity=0.341 Sum_probs=8.3
Q ss_pred ccCCCCCCCce
Q 021656 24 AVCLYCSGGFV 34 (309)
Q Consensus 24 ~~CP~C~~gFv 34 (309)
+.|+.|+..|.
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvh_A 4 FSCSLCPQRSR 14 (27)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCcChhhC
Confidence 57888887774
No 245
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=22.45 E-value=39 Score=28.89 Aligned_cols=44 Identities=18% Similarity=0.431 Sum_probs=25.9
Q ss_pred CceecccCCCceee-cCCCccCCCCCCCceEEecCCCCCCCCCcCCCCC
Q 021656 6 NTHWCYRCRRPVRL-QGEDAVCLYCSGGFVQELDDMVSVSPLDFFGLDN 53 (309)
Q Consensus 6 ~~ywCh~C~r~v~~-~~~~~~CP~C~~gFvEE~~~~~~~~p~~~~~~~~ 53 (309)
..--|..|...+.. ....++|+.|+. |+.... ..+.+.++|+..
T Consensus 9 ~~~~Cw~C~~~~~~~~~~~~fC~~c~~--~q~~~~--~~d~y~lLgv~~ 53 (207)
T 3bvo_A 9 NYPRCWNCGGPWGPGREDRFFCPQCRA--LQAPDP--TRDYFSLMDCNR 53 (207)
T ss_dssp --CBCSSSCCBCCSSCSCCCBCTTTCC--BCCCCT--TCCHHHHTTSCS
T ss_pred CCCCCCCCCCCcccccccccccccccc--cCCCCC--CCCHHHHcCCCC
Confidence 34569999987532 347799999974 333221 234555666654
No 246
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A
Probab=22.40 E-value=27 Score=25.34 Aligned_cols=13 Identities=15% Similarity=0.503 Sum_probs=9.7
Q ss_pred CceecccCCCcee
Q 021656 6 NTHWCYRCRRPVR 18 (309)
Q Consensus 6 ~~ywCh~C~r~v~ 18 (309)
..|||--|++.+.
T Consensus 2 PkYyCdYCd~~lt 14 (77)
T 3cw1_L 2 PKFYCDYCDTYLT 14 (77)
T ss_pred CCcccccCCceec
Confidence 5788888887773
No 247
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=22.33 E-value=57 Score=24.91 Aligned_cols=38 Identities=18% Similarity=0.615 Sum_probs=26.2
Q ss_pred cccccccccccCCceEEccccceeccccchhhhccCCCcCccccccc
Q 021656 184 HCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 230 (309)
Q Consensus 184 ~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~ 230 (309)
.|..|.+.+...+.++ ..=+..||..|+ .|-.|.+.|.
T Consensus 68 ~C~~C~~~I~~~e~~~-~a~~~~~H~~CF--------~C~~C~~~L~ 105 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTM-RVKDKVYHLECF--------KCAACQKHFC 105 (131)
T ss_dssp ECTTTCCEECTTSEEE-EETTEEEEGGGC--------BCTTTCCBCC
T ss_pred ChhhcCCccCccceeE-eeCCceECccCc--------ccCCCCCCCC
Confidence 6888988775433222 235788888885 6888888774
No 248
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=22.32 E-value=28 Score=24.48 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=13.2
Q ss_pred hhhhccCCCcCcccccccC
Q 021656 213 VPWLVQHNSCPVCRQELPL 231 (309)
Q Consensus 213 ~~Wl~~~~sCP~CR~~l~~ 231 (309)
++||..--.||+|+..|..
T Consensus 2 d~~LL~iL~CP~ck~~L~~ 20 (68)
T 2jr6_A 2 EKKFLDILVCPVTKGRLEY 20 (68)
T ss_dssp CCSSSCCCBCSSSCCBCEE
T ss_pred ChHHhhheECCCCCCcCeE
Confidence 4566666678888877654
No 249
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=22.25 E-value=19 Score=33.81 Aligned_cols=48 Identities=23% Similarity=0.358 Sum_probs=0.0
Q ss_pred cccccccccccccCC-ceEEccccceeccccchhhhcc-------CCCcCcccccc
Q 021656 182 DSHCPVCQDKFELGS-EARQMPCNHIYHSDCIVPWLVQ-------HNSCPVCRQEL 229 (309)
Q Consensus 182 ~~~C~IC~~~~~~~~-~~~~lpC~H~fh~~Ci~~Wl~~-------~~sCP~CR~~l 229 (309)
...|.+|...|..-. .-..-.||++||..|-..++.. ...|-.|-..|
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 468999999886432 1223349999999998765421 23477775544
No 250
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=22.20 E-value=69 Score=23.34 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=18.4
Q ss_pred CCceecccCCCceeec----------------C-CCccCCCCCCC
Q 021656 5 RNTHWCYRCRRPVRLQ----------------G-EDAVCLYCSGG 32 (309)
Q Consensus 5 ~~~ywCh~C~r~v~~~----------------~-~~~~CP~C~~g 32 (309)
+..|-|-.|-=..... . .+.+||.|+.+
T Consensus 25 m~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 69 (81)
T 2kn9_A 25 YKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAA 69 (81)
T ss_dssp CCEEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCC
T ss_pred cceEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 4678898887554431 1 35689999873
No 251
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=21.97 E-value=32 Score=19.20 Aligned_cols=13 Identities=23% Similarity=0.534 Sum_probs=10.3
Q ss_pred CccCCCCCCCceE
Q 021656 23 DAVCLYCSGGFVQ 35 (309)
Q Consensus 23 ~~~CP~C~~gFvE 35 (309)
.+.|+.|+..|..
T Consensus 11 ~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 11 PFQCPDCDRSFSR 23 (37)
T ss_dssp SBCCTTTCCCBSS
T ss_pred CccCCCCCcccCc
Confidence 4789999988853
No 252
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=21.92 E-value=34 Score=17.61 Aligned_cols=12 Identities=25% Similarity=0.493 Sum_probs=8.9
Q ss_pred ccCCCCCCCceE
Q 021656 24 AVCLYCSGGFVQ 35 (309)
Q Consensus 24 ~~CP~C~~gFvE 35 (309)
+.|+.|+..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1klr_A 3 YQCQYCEFRSAD 14 (30)
T ss_dssp CCCSSSSCCCSC
T ss_pred ccCCCCCCccCC
Confidence 578888887753
No 253
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=21.88 E-value=61 Score=26.54 Aligned_cols=11 Identities=27% Similarity=1.014 Sum_probs=6.0
Q ss_pred CCcCccccccc
Q 021656 220 NSCPVCRQELP 230 (309)
Q Consensus 220 ~sCP~CR~~l~ 230 (309)
..|..|...|.
T Consensus 120 ~kC~~C~~~I~ 130 (182)
T 2jtn_A 120 TKCAACQLGIP 130 (182)
T ss_dssp CCCTTTCCCCC
T ss_pred cccccCCCccC
Confidence 34666665554
No 254
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=21.84 E-value=32 Score=17.90 Aligned_cols=11 Identities=27% Similarity=0.724 Sum_probs=8.4
Q ss_pred ccCCCCCCCce
Q 021656 24 AVCLYCSGGFV 34 (309)
Q Consensus 24 ~~CP~C~~gFv 34 (309)
+.|+.|+..|.
T Consensus 3 ~~C~~C~k~f~ 13 (30)
T 1paa_A 3 YACGLCNRAFT 13 (30)
T ss_dssp SBCTTTCCBCS
T ss_pred cCCcccCcccC
Confidence 57888888774
No 255
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=26.81 E-value=20 Score=18.31 Aligned_cols=13 Identities=46% Similarity=0.800 Sum_probs=9.9
Q ss_pred ccCCCCCCCceEE
Q 021656 24 AVCLYCSGGFVQE 36 (309)
Q Consensus 24 ~~CP~C~~gFvEE 36 (309)
+.|+.|+..|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 3 YVCERCGKRFVQS 15 (26)
Confidence 5788898888754
No 256
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=21.04 E-value=44 Score=27.62 Aligned_cols=50 Identities=18% Similarity=0.416 Sum_probs=29.1
Q ss_pred ccccccccccccc-CCceEEccccceeccccchhhhccCCCcCcccccccCC
Q 021656 182 DSHCPVCQDKFEL-GSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQ 232 (309)
Q Consensus 182 ~~~C~IC~~~~~~-~~~~~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~l~~~ 232 (309)
-..|..|...+.. +... ...=+..||..|...-+.....|..|.+.|...
T Consensus 32 CF~C~~C~~~L~~~g~~~-~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~ 82 (188)
T 1rut_X 32 CLKCSSCQAQLGDIGTSS-YTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 82 (188)
T ss_dssp GCBCTTTCCBHHHHCSEE-EEETTEEECHHHHHHHHSCCEECTTTCCEECTT
T ss_pred CcccCCCCcccccCCceE-EEeCCccccccccccccccCCccccCCCccccC
Confidence 3577777766653 2111 112356677777655433223699999988753
No 257
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=20.94 E-value=27 Score=18.10 Aligned_cols=11 Identities=27% Similarity=0.688 Sum_probs=8.1
Q ss_pred ccCCCCCCCce
Q 021656 24 AVCLYCSGGFV 34 (309)
Q Consensus 24 ~~CP~C~~gFv 34 (309)
+.|+.|+..|.
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 1rik_A 3 FACPECPKRFM 13 (29)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCCCchhC
Confidence 46888887774
No 258
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=20.88 E-value=41 Score=22.91 Aligned_cols=25 Identities=16% Similarity=0.433 Sum_probs=18.9
Q ss_pred CceecccCCCceee-cCCCccCCCCC
Q 021656 6 NTHWCYRCRRPVRL-QGEDAVCLYCS 30 (309)
Q Consensus 6 ~~ywCh~C~r~v~~-~~~~~~CP~C~ 30 (309)
..-||..|...+.- ..+.+.|..|.
T Consensus 22 ~pt~C~~C~~~l~Gl~~qg~~C~~C~ 47 (65)
T 2enz_A 22 SPTFCEHCGTLLWGLARQGLKCDACG 47 (65)
T ss_dssp SCCBCSSSCCBCCCSSSCSEEESSSC
T ss_pred CCcCchhcChhheecCCcccccCCCC
Confidence 34689999998853 34888998885
No 259
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=20.73 E-value=25 Score=25.84 Aligned_cols=11 Identities=27% Similarity=0.615 Sum_probs=8.6
Q ss_pred ccCCCCCCCce
Q 021656 24 AVCLYCSGGFV 34 (309)
Q Consensus 24 ~~CP~C~~gFv 34 (309)
++||.|+..|.
T Consensus 52 FkCP~CgEEFy 62 (95)
T 2k5c_A 52 FKCPVCGEEFY 62 (95)
T ss_dssp EECTTTCCEEE
T ss_pred hcCCCccHHHh
Confidence 58999996654
No 260
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=20.63 E-value=28 Score=21.15 Aligned_cols=9 Identities=44% Similarity=1.158 Sum_probs=5.0
Q ss_pred CcCcccccc
Q 021656 221 SCPVCRQEL 229 (309)
Q Consensus 221 sCP~CR~~l 229 (309)
.||+|.+.+
T Consensus 7 iCP~C~~~l 15 (34)
T 3mjh_B 7 ICPQCMKSL 15 (34)
T ss_dssp ECTTTCCEE
T ss_pred CCcHHHHHc
Confidence 366665544
No 261
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=20.37 E-value=25 Score=27.00 Aligned_cols=16 Identities=31% Similarity=0.750 Sum_probs=12.5
Q ss_pred CCCceecccCCCceee
Q 021656 4 GRNTHWCYRCRRPVRL 19 (309)
Q Consensus 4 ~~~~ywCh~C~r~v~~ 19 (309)
+..+.|||.|+..|..
T Consensus 71 ~~~~vwCy~cd~~V~~ 86 (109)
T 3c5k_A 71 IDLSAWCYYCQAYVHH 86 (109)
T ss_dssp TTCCEEETTTTEEBCC
T ss_pred CCCCEEECCCCCEEec
Confidence 3457999999998853
No 262
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=20.20 E-value=33 Score=29.18 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=13.7
Q ss_pred EEccccceeccccchhhhccCCCcCccccc
Q 021656 199 RQMPCNHIYHSDCIVPWLVQHNSCPVCRQE 228 (309)
Q Consensus 199 ~~lpC~H~fh~~Ci~~Wl~~~~sCP~CR~~ 228 (309)
+...|+|++-. ..+| .||+|...
T Consensus 173 ~C~~CG~i~~g--~~p~-----~CP~C~~~ 195 (202)
T 1yuz_A 173 LCPICGYIHKG--EDFE-----KCPICFRP 195 (202)
T ss_dssp ECSSSCCEEES--SCCS-----BCTTTCCB
T ss_pred EECCCCCEEcC--cCCC-----CCCCCCCC
Confidence 34446666543 3444 79999753
No 263
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=20.09 E-value=30 Score=24.44 Aligned_cols=19 Identities=32% Similarity=0.684 Sum_probs=12.5
Q ss_pred hhhhccCCCcCcccccccC
Q 021656 213 VPWLVQHNSCPVCRQELPL 231 (309)
Q Consensus 213 ~~Wl~~~~sCP~CR~~l~~ 231 (309)
++||..--.||+|+..|..
T Consensus 2 d~~LL~iL~CP~ck~~L~~ 20 (70)
T 2js4_A 2 ESRLLDILVCPVCKGRLEF 20 (70)
T ss_dssp CCCCCCCCBCTTTCCBEEE
T ss_pred ChHHhhheECCCCCCcCEE
Confidence 4556656678888877654
No 264
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=20.06 E-value=18 Score=20.01 Aligned_cols=13 Identities=38% Similarity=1.091 Sum_probs=10.3
Q ss_pred ceeccccchhhhc
Q 021656 205 HIYHSDCIVPWLV 217 (309)
Q Consensus 205 H~fh~~Ci~~Wl~ 217 (309)
..||..|-.+||.
T Consensus 5 dffcetcskpwlv 17 (26)
T 1loi_A 5 DFFCETCSKPWLV 17 (26)
T ss_dssp HHHHHTSSCTTGG
T ss_pred HHHHHhcCCchhh
Confidence 3588889999985
Done!