BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021657
(309 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 130 bits (328), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 111/215 (51%), Gaps = 16/215 (7%)
Query: 77 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSPVIKVEKAH 135
+G V + I+ GH VEDV++ F SV DD L++WD R TS AH
Sbjct: 213 EGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAH 272
Query: 136 DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP 195
A+++C+ +NP + ++ TGSAD +V ++D RNL ++ FE H + VQWSP
Sbjct: 273 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSP 327
Query: 196 DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR-TTNYPAGLFFQHAGHRDKVVDFHWNAS 254
++ SS D LN+WD K+G+ EQ P + P L F H GH K+ DF WN +
Sbjct: 328 HNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNPN 385
Query: 255 DPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 289
+PW +Q+W+M++ IY +D
Sbjct: 386 EPW-------VICSVSEDNIMQVWQMAENIYNDED 413
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 129 IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS----NGVGSPINKFEGH 184
I+++ H+ +++ + P + +I T + + V +FD S +G +P + GH
Sbjct: 117 IEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGH 176
Query: 185 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK 221
+ W+P+ S S+++D + +WD V K+
Sbjct: 177 QKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKE 213
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 29/129 (22%)
Query: 15 LAMCPTEPYVL-SGGKDKSVVLWSI-------------QDHITSSATDPATAKSAGSSG- 59
L+ P ++L +G DK+V LW + +D I P SSG
Sbjct: 279 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 338
Query: 60 ---------SIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 110
S I + P D A DGP I+ GH + D ++ P+ CSV
Sbjct: 339 DRRLNVWDLSKIGEEQSPED----AEDGPP-ELLFIHGGHTAKISDFSWNPNEPWVICSV 393
Query: 111 GDDSCLILW 119
+D+ + +W
Sbjct: 394 SEDNIMQVW 402
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 109/217 (50%), Gaps = 14/217 (6%)
Query: 70 DGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT-SPV 128
D N +G V + I+ GH VEDV + F SV DD L++WD R T S
Sbjct: 208 DINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKP 267
Query: 129 IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV 188
+ AH A+++C+ +NP + ++ TGSAD +V ++D RNL ++ FE H +
Sbjct: 268 SHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHTFESHKDEI 322
Query: 189 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD 248
V WSP ++ SS D LN+WD K+G++ + + P L F H GH K+ D
Sbjct: 323 FQVHWSPHNETILASSGTDRRLNVWDLSKIGEE-QSAEDAEDGPPELLFIHGGHTAKISD 381
Query: 249 FHWNASDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIY 285
F WN ++PW +QIW+M++ IY
Sbjct: 382 FSWNPNEPW-------VICSVSEDNIMQIWQMAENIY 411
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 19/124 (15%)
Query: 15 LAMCPTEPYVL-SGGKDKSVVLWSIQD-----HITSSATD--------PATAKSAGSSGS 60
L+ P ++L +G DK+V LW +++ H S D P SSG+
Sbjct: 281 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGT 340
Query: 61 IIKQS--PKPGDGNDKAADGPSVGP---RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC 115
+ + G +++A+ GP I+ GH + D ++ P+ CSV +D+
Sbjct: 341 DRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 400
Query: 116 LILW 119
+ +W
Sbjct: 401 MQIW 404
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 62/150 (41%), Gaps = 17/150 (11%)
Query: 91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN 150
+D D + C S EF G + I + ++ H+ +++ + P + +
Sbjct: 91 DDAQFDASHCDSDKGEFGGFGSVTGKIECEIKIN----------HEGEVNRARYMPQNPH 140
Query: 151 LILTGSADNSVRMFDRRNLTS----NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE 206
+I T + + V +FD + +G +P + GH + W+ + S S+++
Sbjct: 141 IIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASD 200
Query: 207 DGLLNIWDYE---KVGKKVEQGPRTTNYPA 233
D + +WD K GK V+ T + A
Sbjct: 201 DHTVCLWDINAGPKEGKIVDAKAIFTGHSA 230
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 124 bits (311), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 129/288 (44%), Gaps = 49/288 (17%)
Query: 4 LTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
L GHQ + L+ P Y+LS D ++ LW I AT K
Sbjct: 177 LRGHQKEG-YGLSWNPNLNGYLLSASDDHTICLWDIN----------ATPK--------- 216
Query: 63 KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 122
+ + + I+ GH VEDV + F SV DD L++WD R
Sbjct: 217 --------------EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR 262
Query: 123 VG-TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 181
TS AH A+++C+ +NP + ++ TGSAD +V ++D RNL ++ F
Sbjct: 263 NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSF 317
Query: 182 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG 241
E H + VQWSP ++ SS D L++WD K+G++ + + P L F H G
Sbjct: 318 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE-QSTEDAEDGPPELLFIHGG 376
Query: 242 HRDKVVDFHWNASDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 289
H K+ DF WN ++PW +Q+W+M++ +Y ++
Sbjct: 377 HTAKISDFSWNPNEPW-------IICSVSEDNIMQVWQMAENVYNDEE 417
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/97 (20%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 129 IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS----NGVGSPINKFEGH 184
I+++ H+ +++ + P + +I T + + V +FD S +G P + GH
Sbjct: 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGH 180
Query: 185 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK 221
+ W+P+ + S+++D + +WD K+
Sbjct: 181 QKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE 217
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 124 bits (311), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 129/288 (44%), Gaps = 49/288 (17%)
Query: 4 LTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
L GHQ + L+ P Y+LS D ++ LW I AT K
Sbjct: 179 LRGHQKEG-YGLSWNPNLNGYLLSASDDHTICLWDIN----------ATPK--------- 218
Query: 63 KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 122
+ + + I+ GH VEDV + F SV DD L++WD R
Sbjct: 219 --------------EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR 264
Query: 123 VG-TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 181
TS AH A+++C+ +NP + ++ TGSAD +V ++D RNL ++ F
Sbjct: 265 NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSF 319
Query: 182 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG 241
E H + VQWSP ++ SS D L++WD K+G++ + + P L F H G
Sbjct: 320 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE-QSTEDAEDGPPELLFIHGG 378
Query: 242 HRDKVVDFHWNASDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 289
H K+ DF WN ++PW +Q+W+M++ +Y ++
Sbjct: 379 HTAKISDFSWNPNEPW-------IICSVSEDNIMQVWQMAENVYNDEE 419
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/97 (20%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 129 IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS----NGVGSPINKFEGH 184
I+++ H+ +++ + P + +I T + + V +FD S +G P + GH
Sbjct: 123 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGH 182
Query: 185 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK 221
+ W+P+ + S+++D + +WD K+
Sbjct: 183 QKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE 219
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 129/288 (44%), Gaps = 49/288 (17%)
Query: 4 LTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 62
L GHQ + L+ P Y+LS D ++ LW I AT K
Sbjct: 181 LRGHQKEG-YGLSWNPNLNGYLLSASDDHTICLWDIN----------ATPK--------- 220
Query: 63 KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 122
+ + + I+ GH VEDV + F SV DD L++WD R
Sbjct: 221 --------------EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR 266
Query: 123 VG-TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 181
TS AH A+++C+ +NP + ++ TGSAD +V ++D RNL ++ F
Sbjct: 267 NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSF 321
Query: 182 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG 241
E H + VQWSP ++ SS D L++WD K+G++ + + P L F H G
Sbjct: 322 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE-QSTEDAEDGPPELLFIHGG 380
Query: 242 HRDKVVDFHWNASDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 289
H K+ DF WN ++PW +Q+W+M++ +Y ++
Sbjct: 381 HTAKISDFSWNPNEPW-------IICSVSEDNIMQVWQMAENVYNDEE 421
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/97 (20%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 129 IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS----NGVGSPINKFEGH 184
I+++ H+ +++ + P + +I T + + V +FD S +G P + GH
Sbjct: 125 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGH 184
Query: 185 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK 221
+ W+P+ + S+++D + +WD K+
Sbjct: 185 QKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE 221
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 107/217 (49%), Gaps = 14/217 (6%)
Query: 70 DGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT-SPV 128
D N +G V + I+ GH VEDV + F SV DD L +WD R T S
Sbjct: 208 DINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKP 267
Query: 129 IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV 188
+ AH A+++C+ +NP + ++ TGSAD +V ++D RNL ++ FE H +
Sbjct: 268 SHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHTFESHKDEI 322
Query: 189 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD 248
V WSP ++ SS D LN+WD K+G++ + + P L F H GH K+ D
Sbjct: 323 FQVHWSPHNETILASSGTDRRLNVWDLSKIGEE-QSAEDAEDGPPELLFIHGGHTAKISD 381
Query: 249 FHWNASDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIY 285
F WN ++PW QIW+ ++ IY
Sbjct: 382 FSWNPNEPWVICSVSEDNIX-------QIWQXAENIY 411
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 19/124 (15%)
Query: 15 LAMCPTEPYVL-SGGKDKSVVLWSIQD-----HITSSATD--------PATAKSAGSSGS 60
L+ P ++L +G DK+V LW +++ H S D P SSG+
Sbjct: 281 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGT 340
Query: 61 IIKQS--PKPGDGNDKAADGPSVGP---RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC 115
+ + G +++A+ GP I+ GH + D ++ P+ CSV +D+
Sbjct: 341 DRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 400
Query: 116 LILW 119
+W
Sbjct: 401 XQIW 404
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 62/150 (41%), Gaps = 17/150 (11%)
Query: 91 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN 150
+D D + C S EF G + I + ++ H+ +++ + P + +
Sbjct: 91 DDAQFDASHCDSDKGEFGGFGSVTGKIECEIKIN----------HEGEVNRARYXPQNPH 140
Query: 151 LILTGSADNSVRMFDRRNLTS----NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE 206
+I T + + V +FD + +G +P + GH + W+ + S S+++
Sbjct: 141 IIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASD 200
Query: 207 DGLLNIWDYE---KVGKKVEQGPRTTNYPA 233
D + +WD K GK V+ T + A
Sbjct: 201 DHTVCLWDINAGPKEGKIVDAKAIFTGHSA 230
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 88 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 86 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 141
Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
NLI++GS D SVR++D + G + HS V V ++ D S+ SS+ D
Sbjct: 142 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYD 194
Query: 208 GLLNIWD 214
GL IWD
Sbjct: 195 GLCRIWD 201
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 96/221 (43%), Gaps = 20/221 (9%)
Query: 1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQD----HITSSATDPATAKSAG 56
++ L GH N F P ++SG D+SV +W ++ + +DP +A
Sbjct: 124 LKTLKGHS-NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 182
Query: 57 SSGSIIKQSPKPGDGNDKAADGPS-VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC 115
GS+I S DG + D S + + + V V F P+ + D++
Sbjct: 183 RDGSLIVSSSY--DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT- 239
Query: 116 LILWDARVGTSPVIKVEKAHDADLHCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNG 173
L LWD G +K H + +C+ +++ I++GS DN V ++ NL +
Sbjct: 240 LKLWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKE 294
Query: 174 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE-DGLLNIW 213
+ + K +GH+ V+ P ++ + ++ E D + +W
Sbjct: 295 I---VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 88 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 65 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 120
Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 121 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 173
Query: 208 GLLNIWD 214
GL IWD
Sbjct: 174 GLCRIWD 180
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 93/214 (43%), Gaps = 19/214 (8%)
Query: 1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQD----HITSSATDPATAKSAG 56
++ L GH N F P ++SG D+SV +W ++ + +DP +A
Sbjct: 103 LKTLKGHS-NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 161
Query: 57 SSGSIIKQSPKPGDGNDKAADGPS-VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC 115
GS+I S DG + D S + + + V V F P+ + D++
Sbjct: 162 RDGSLIVSSSY--DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT- 218
Query: 116 LILWDARVGTSPVIKVEKAHDADLHCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNG 173
L LWD G +K H + +C+ +++ I++GS DN V ++ NL +
Sbjct: 219 LKLWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKE 273
Query: 174 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
+ + K +GH+ V+ P ++ + ++ E+
Sbjct: 274 I---VQKLQGHTDVVISTACHPTENIIASAALEN 304
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 88 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 84 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 139
Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
NLI++GS D SVR++D + G + HS V V ++ D S+ SS+ D
Sbjct: 140 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYD 192
Query: 208 GLLNIWD 214
GL IWD
Sbjct: 193 GLCRIWD 199
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 96/221 (43%), Gaps = 20/221 (9%)
Query: 1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQD----HITSSATDPATAKSAG 56
++ L GH N F P ++SG D+SV +W ++ + +DP +A
Sbjct: 122 LKTLKGHS-NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 180
Query: 57 SSGSIIKQSPKPGDGNDKAADGPS-VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC 115
GS+I S DG + D S + + + V V F P+ + D++
Sbjct: 181 RDGSLIVSSSY--DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT- 237
Query: 116 LILWDARVGTSPVIKVEKAHDADLHCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNG 173
L LWD G +K H + +C+ +++ I++GS DN V ++ NL +
Sbjct: 238 LKLWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKE 292
Query: 174 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE-DGLLNIW 213
+ + K +GH+ V+ P ++ + ++ E D + +W
Sbjct: 293 I---VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 88 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 67 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 122
Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 123 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 175
Query: 208 GLLNIWD 214
GL IWD
Sbjct: 176 GLCRIWD 182
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 96/221 (43%), Gaps = 20/221 (9%)
Query: 1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQD----HITSSATDPATAKSAG 56
++ L GH N F P ++SG D+SV +W ++ + +DP +A
Sbjct: 105 LKTLKGHS-NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 163
Query: 57 SSGSIIKQSPKPGDGNDKAADGPS-VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC 115
GS+I S DG + D S + + + V V F P+ + D++
Sbjct: 164 RDGSLIVSSSY--DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT- 220
Query: 116 LILWDARVGTSPVIKVEKAHDADLHCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNG 173
L LWD G +K H + +C+ +++ I++GS DN V ++ NL +
Sbjct: 221 LKLWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKE 275
Query: 174 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE-DGLLNIW 213
+ + K +GH+ V+ P ++ + ++ E D + +W
Sbjct: 276 I---VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 88 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 65 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 120
Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 121 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 173
Query: 208 GLLNIWD 214
GL IWD
Sbjct: 174 GLCRIWD 180
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 93/214 (43%), Gaps = 19/214 (8%)
Query: 1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQD----HITSSATDPATAKSAG 56
++ L GH N F P ++SG D+SV +W ++ + +DP +A
Sbjct: 103 LKTLKGHS-NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 161
Query: 57 SSGSIIKQSPKPGDGNDKAADGPS-VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC 115
GS+I S DG + D S + + + V V F P+ + D++
Sbjct: 162 RDGSLIVSSSY--DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT- 218
Query: 116 LILWDARVGTSPVIKVEKAHDADLHCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNG 173
L LWD G +K H + +C+ +++ I++GS DN V ++ NL +
Sbjct: 219 LKLWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKE 273
Query: 174 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
+ + K +GH+ V+ P ++ + ++ E+
Sbjct: 274 I---VQKLQGHTDVVISTACHPTENIIASAALEN 304
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 88 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 79 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 134
Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 135 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 187
Query: 208 GLLNIWD 214
GL IWD
Sbjct: 188 GLCRIWD 194
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 96/221 (43%), Gaps = 20/221 (9%)
Query: 1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQD----HITSSATDPATAKSAG 56
++ L GH N F P ++SG D+SV +W ++ + +DP +A
Sbjct: 117 LKTLKGHS-NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 175
Query: 57 SSGSIIKQSPKPGDGNDKAADGPS-VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC 115
GS+I S DG + D S + + + V V F P+ + D++
Sbjct: 176 RDGSLIVSSSY--DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT- 232
Query: 116 LILWDARVGTSPVIKVEKAHDADLHCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNG 173
L LWD G +K H + +C+ +++ I++GS DN V ++ NL +
Sbjct: 233 LKLWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKE 287
Query: 174 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE-DGLLNIW 213
+ + K +GH+ V+ P ++ + ++ E D + +W
Sbjct: 288 I---VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 88 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 68 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 123
Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 124 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 176
Query: 208 GLLNIWD 214
GL IWD
Sbjct: 177 GLCRIWD 183
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 96/221 (43%), Gaps = 20/221 (9%)
Query: 1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQD----HITSSATDPATAKSAG 56
++ L GH N F P ++SG D+SV +W ++ + +DP +A
Sbjct: 106 LKTLKGHS-NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164
Query: 57 SSGSIIKQSPKPGDGNDKAADGPS-VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC 115
GS+I S DG + D S + + + V V F P+ + D++
Sbjct: 165 RDGSLIVSSSY--DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT- 221
Query: 116 LILWDARVGTSPVIKVEKAHDADLHCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNG 173
L LWD G +K H + +C+ +++ I++GS DN V ++ NL +
Sbjct: 222 LKLWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKE 276
Query: 174 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE-DGLLNIW 213
+ + K +GH+ V+ P ++ + ++ E D + +W
Sbjct: 277 I---VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 88 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 68 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 123
Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 124 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 176
Query: 208 GLLNIWD 214
GL IWD
Sbjct: 177 GLCRIWD 183
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 96/221 (43%), Gaps = 20/221 (9%)
Query: 1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQD----HITSSATDPATAKSAG 56
++ L GH N F P ++SG D+SV +W ++ + +DP +A
Sbjct: 106 LKTLKGHS-NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164
Query: 57 SSGSIIKQSPKPGDGNDKAADGPS-VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC 115
GS+I S DG + D S + + + V V F P+ + D++
Sbjct: 165 RDGSLIVSSSY--DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT- 221
Query: 116 LILWDARVGTSPVIKVEKAHDADLHCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNG 173
L LWD G +K H + +C+ +++ I++GS DN V ++ NL +
Sbjct: 222 LKLWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKE 276
Query: 174 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE-DGLLNIW 213
+ + K +GH+ V+ P ++ + ++ E D + +W
Sbjct: 277 I---VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 88 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 63 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 118
Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 119 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 171
Query: 208 GLLNIWD 214
GL IWD
Sbjct: 172 GLCRIWD 178
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 96/221 (43%), Gaps = 20/221 (9%)
Query: 1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQD----HITSSATDPATAKSAG 56
++ L GH N F P ++SG D+SV +W ++ + +DP +A
Sbjct: 101 LKTLKGHS-NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 159
Query: 57 SSGSIIKQSPKPGDGNDKAADGPS-VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC 115
GS+I S DG + D S + + + V V F P+ + D++
Sbjct: 160 RDGSLIVSSSY--DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT- 216
Query: 116 LILWDARVGTSPVIKVEKAHDADLHCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNG 173
L LWD G +K H + +C+ +++ I++GS DN V ++ NL +
Sbjct: 217 LKLWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKE 271
Query: 174 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE-DGLLNIW 213
+ + K +GH+ V+ P ++ + ++ E D + +W
Sbjct: 272 I---VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 88 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 65 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 120
Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 121 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 173
Query: 208 GLLNIWD 214
GL IWD
Sbjct: 174 GLCRIWD 180
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 96/221 (43%), Gaps = 20/221 (9%)
Query: 1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQD----HITSSATDPATAKSAG 56
++ L GH N F P ++SG D+SV +W ++ + +DP +A
Sbjct: 103 LKTLKGHS-NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 161
Query: 57 SSGSIIKQSPKPGDGNDKAADGPS-VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC 115
GS+I S DG + D S + + + V V F P+ + D++
Sbjct: 162 RDGSLIVSSSY--DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT- 218
Query: 116 LILWDARVGTSPVIKVEKAHDADLHCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNG 173
L LWD G +K H + +C+ +++ I++GS DN V ++ NL +
Sbjct: 219 LKLWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKE 273
Query: 174 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE-DGLLNIW 213
+ + K +GH+ V+ P ++ + ++ E D + +W
Sbjct: 274 I---VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 88 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 68 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 123
Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 124 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 176
Query: 208 GLLNIWD 214
GL IWD
Sbjct: 177 GLCRIWD 183
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 96/221 (43%), Gaps = 20/221 (9%)
Query: 1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQD----HITSSATDPATAKSAG 56
++ L GH N F P ++SG D+SV +W ++ + +DP +A
Sbjct: 106 LKTLKGHS-NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164
Query: 57 SSGSIIKQSPKPGDGNDKAADGPS-VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC 115
GS+I S DG + D S + + + V V F P+ + D++
Sbjct: 165 RDGSLIVSSSY--DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT- 221
Query: 116 LILWDARVGTSPVIKVEKAHDADLHCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNG 173
L LWD G +K H + +C+ +++ I++GS DN V ++ NL +
Sbjct: 222 LKLWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKE 276
Query: 174 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE-DGLLNIW 213
+ + K +GH+ V+ P ++ + ++ E D + +W
Sbjct: 277 I---VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 88 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 62 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 117
Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 118 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 170
Query: 208 GLLNIWD 214
GL IWD
Sbjct: 171 GLCRIWD 177
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 96/221 (43%), Gaps = 20/221 (9%)
Query: 1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQD----HITSSATDPATAKSAG 56
++ L GH N F P ++SG D+SV +W ++ + +DP +A
Sbjct: 100 LKTLKGHS-NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 158
Query: 57 SSGSIIKQSPKPGDGNDKAADGPS-VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC 115
GS+I S DG + D S + + + V V F P+ + D++
Sbjct: 159 RDGSLIVSSSY--DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT- 215
Query: 116 LILWDARVGTSPVIKVEKAHDADLHCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNG 173
L LWD G +K H + +C+ +++ I++GS DN V ++ NL +
Sbjct: 216 LKLWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKE 270
Query: 174 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE-DGLLNIW 213
+ + K +GH+ V+ P ++ + ++ E D + +W
Sbjct: 271 I---VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 88 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 61 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 116
Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 117 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 169
Query: 208 GLLNIWD 214
GL IWD
Sbjct: 170 GLCRIWD 176
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 96/221 (43%), Gaps = 20/221 (9%)
Query: 1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQD----HITSSATDPATAKSAG 56
++ L GH N F P ++SG D+SV +W ++ + +DP +A
Sbjct: 99 LKTLKGHS-NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 157
Query: 57 SSGSIIKQSPKPGDGNDKAADGPS-VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC 115
GS+I S DG + D S + + + V V F P+ + D++
Sbjct: 158 RDGSLIVSSSY--DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT- 214
Query: 116 LILWDARVGTSPVIKVEKAHDADLHCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNG 173
L LWD G +K H + +C+ +++ I++GS DN V ++ NL +
Sbjct: 215 LKLWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKE 269
Query: 174 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE-DGLLNIW 213
+ + K +GH+ V+ P ++ + ++ E D + +W
Sbjct: 270 I---VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 307
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 88 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 58 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 113
Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
NLI++GS D SVR++D + G + HS V V ++ D S+ SS+ D
Sbjct: 114 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYD 166
Query: 208 GLLNIWD 214
GL IWD
Sbjct: 167 GLCRIWD 173
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 96/221 (43%), Gaps = 20/221 (9%)
Query: 1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQD----HITSSATDPATAKSAG 56
++ L GH N F P ++SG D+SV +W ++ + +DP +A
Sbjct: 96 LKTLKGHS-NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 154
Query: 57 SSGSIIKQSPKPGDGNDKAADGPS-VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC 115
GS+I S DG + D S + + + V V F P+ + D++
Sbjct: 155 RDGSLIVSSSY--DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT- 211
Query: 116 LILWDARVGTSPVIKVEKAHDADLHCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNG 173
L LWD G +K H + +C+ +++ I++GS DN V ++ NL +
Sbjct: 212 LKLWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKE 266
Query: 174 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE-DGLLNIW 213
+ + K +GH+ V+ P ++ + ++ E D + +W
Sbjct: 267 I---VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 88 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 62 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 117
Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
NLI++GS D SVR++D + G + HS V V ++ D S+ SS+ D
Sbjct: 118 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYD 170
Query: 208 GLLNIWD 214
GL IWD
Sbjct: 171 GLCRIWD 177
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 96/221 (43%), Gaps = 20/221 (9%)
Query: 1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQD----HITSSATDPATAKSAG 56
++ L GH N F P ++SG D+SV +W ++ + +DP +A
Sbjct: 100 LKTLKGHS-NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 158
Query: 57 SSGSIIKQSPKPGDGNDKAADGPS-VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC 115
GS+I S DG + D S + + + V V F P+ + D++
Sbjct: 159 RDGSLIVSSSY--DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT- 215
Query: 116 LILWDARVGTSPVIKVEKAHDADLHCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNG 173
L LWD G +K H + +C+ +++ I++GS DN V ++ NL +
Sbjct: 216 LKLWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKE 270
Query: 174 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE-DGLLNIW 213
+ + K +GH+ V+ P ++ + ++ E D + +W
Sbjct: 271 I---VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 88 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 65 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 120
Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 121 QSNLIVSGSFDESVRIWDVK------TGMCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 173
Query: 208 GLLNIWD 214
GL IWD
Sbjct: 174 GLCRIWD 180
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 96/221 (43%), Gaps = 20/221 (9%)
Query: 1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA----TDPATAKSAG 56
++ L GH N F P ++SG D+SV +W ++ + +DP +A
Sbjct: 103 LKTLKGHS-NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFN 161
Query: 57 SSGSIIKQSPKPGDGNDKAADGPS-VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC 115
GS+I S DG + D S + + + V V F P+ + D++
Sbjct: 162 RDGSLIVSSSY--DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT- 218
Query: 116 LILWDARVGTSPVIKVEKAHDADLHCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNG 173
L LWD G +K H + +C+ +++ I++GS DN V ++ NL +
Sbjct: 219 LKLWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW---NLQTKE 273
Query: 174 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE-DGLLNIW 213
+ + K +GH+ V+ P ++ + ++ E D + +W
Sbjct: 274 I---VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 88 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 65 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 120
Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 121 QSNLIVSGSFDESVRIWDVK------TGMCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 173
Query: 208 GLLNIWD 214
GL IWD
Sbjct: 174 GLCRIWD 180
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 95/221 (42%), Gaps = 20/221 (9%)
Query: 1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA----TDPATAKSAG 56
++ L GH N F P ++SG D+SV +W ++ + +DP +A
Sbjct: 103 LKTLKGHS-NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFN 161
Query: 57 SSGSIIKQSPKPGDGNDKAADGPS-VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC 115
GS+I S DG + D S + + + V V F P+ + D+
Sbjct: 162 RDGSLIVSSSY--DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDND- 218
Query: 116 LILWDARVGTSPVIKVEKAHDADLHCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNG 173
L LWD G +K H + +C+ +++ I++GS DN V ++ NL +
Sbjct: 219 LKLWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW---NLQTKE 273
Query: 174 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE-DGLLNIW 213
+ + K +GH+ V+ P ++ + ++ E D + +W
Sbjct: 274 I---VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 99/225 (44%), Gaps = 36/225 (16%)
Query: 1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGS 60
++ LTGH + +A P + S DK+V LW+ + + T G S S
Sbjct: 378 LQTLTGHSSSVR-GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT--------GHSSS 428
Query: 61 IIKQSPKPGDGN-DKAADGPSVGPRGIYN----------GHEDTVEDVTFCPSSAQEFCS 109
+ + P D A+D +V ++N GH +V V F P Q S
Sbjct: 429 VWGVAFSPDDQTIASASDDKTVK---LWNRNGQLLQTLTGHSSSVRGVAFSPD-GQTIAS 484
Query: 110 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 169
DD + LW+ R G +++ H + + V ++P D I + S D +V++++R
Sbjct: 485 ASDDKTVKLWN-RNG--QLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRN-- 538
Query: 170 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 214
G + GHS++V V +SPD ++ S++ D + +W+
Sbjct: 539 -----GQLLQTLTGHSSSVWGVAFSPDGQTI-ASASSDKTVKLWN 577
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 101/225 (44%), Gaps = 36/225 (16%)
Query: 1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGS 60
++ LTGH + + +A P + S DK+V LW+ + + T G S S
Sbjct: 173 LQTLTGHSSSV-WGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT--------GHSSS 223
Query: 61 IIKQSPKP-GDGNDKAADGPSVGPRGIYN----------GHEDTVEDVTFCPSSAQEFCS 109
+ + P G A+D +V ++N GH +V V F P Q S
Sbjct: 224 VRGVAFSPDGQTIASASDDKTVK---LWNRNGQLLQTLTGHSSSVNGVAFRPD-GQTIAS 279
Query: 110 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 169
DD + LW+ R G +++ H + + V ++P D I + S D +V++++R
Sbjct: 280 ASDDKTVKLWN-RNG--QLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRN-- 333
Query: 170 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 214
G + GHS++V V +SPD ++ S+++D + +W+
Sbjct: 334 -----GQHLQTLTGHSSSVWGVAFSPDGQTI-ASASDDKTVKLWN 372
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 101/225 (44%), Gaps = 36/225 (16%)
Query: 1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGS 60
++ LTGH + + +A P + S DK+V LW+ + + T G S S
Sbjct: 50 LQTLTGHSSSV-WGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT--------GHSSS 100
Query: 61 IIKQSPKP-GDGNDKAADGPSVGPRGIYN----------GHEDTVEDVTFCPSSAQEFCS 109
+ + P G A+D +V ++N GH +V V F P Q S
Sbjct: 101 VRGVAFSPDGQTIASASDDKTV---KLWNRNGQLLQTLTGHSSSVWGVAFSP-DGQTIAS 156
Query: 110 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 169
DD + LW+ R G +++ H + + V ++P D I + S D +V++++R
Sbjct: 157 ASDDKTVKLWN-RNG--QLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRN-- 210
Query: 170 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 214
G + GHS++V V +SPD ++ S+++D + +W+
Sbjct: 211 -----GQLLQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWN 249
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 100/225 (44%), Gaps = 36/225 (16%)
Query: 1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGS 60
++ LTGH + +A P + S DK+V LW+ + + T G S S
Sbjct: 214 LQTLTGHSSSVR-GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT--------GHSSS 264
Query: 61 IIKQSPKP-GDGNDKAADGPSVGPRGIYN----------GHEDTVEDVTFCPSSAQEFCS 109
+ + +P G A+D +V ++N GH +V V F P Q S
Sbjct: 265 VNGVAFRPDGQTIASASDDKTVK---LWNRNGQLLQTLTGHSSSVWGVAFSPD-GQTIAS 320
Query: 110 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 169
DD + LW+ R G ++ H + + V ++P D I + S D +V++++R
Sbjct: 321 ASDDKTVKLWN-RNGQH--LQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRN-- 374
Query: 170 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 214
G + GHS++V V +SPD ++ S+++D + +W+
Sbjct: 375 -----GQLLQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWN 413
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 13/134 (9%)
Query: 81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLH 140
V R H +V V F P Q S DD + LW+ R G +++ H + +
Sbjct: 6 VKERNRLEAHSSSVRGVAFSPD-GQTIASASDDKTVKLWN-RNG--QLLQTLTGHSSSVW 61
Query: 141 CVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSV 200
V ++P D I + S D +V++++R G + GHS++V V +SPD ++
Sbjct: 62 GVAFSP-DGQTIASASDDKTVKLWNRN-------GQLLQTLTGHSSSVRGVAFSPDGQTI 113
Query: 201 FGSSAEDGLLNIWD 214
S+++D + +W+
Sbjct: 114 -ASASDDKTVKLWN 126
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 10/141 (7%)
Query: 86 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI---KVEKAHDADLHCV 142
+ GH+ + P + D +LWD G I + H AD+ +
Sbjct: 152 VLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL 211
Query: 143 DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFG 202
N L+ N+ ++GS D +VR++D R +TS V + GH + V++ PD FG
Sbjct: 212 SINSLNANMFISGSCDTTVRLWDLR-ITSRAV----RTYHGHEGDINSVKFFPDGQR-FG 265
Query: 203 SSAEDGLLNIWDYEKVGKKVE 223
+ ++DG ++D + G +++
Sbjct: 266 TGSDDGTCRLFDM-RTGHQLQ 285
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 56/139 (40%), Gaps = 15/139 (10%)
Query: 94 VEDVTFCPSSAQEFCSVGDDSCLILWDA----RVGTSPVIKVEKAHDADLHCVDWNPLDD 149
V + F P+ C D +C I + R G PV +V H + P +
Sbjct: 111 VMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE 170
Query: 150 NLILTGSADNSVRMFDRRNLTSNGVGSPINKF-----EGHSAAVLCVQWSPDKSSVFGSS 204
++TGS D + ++D G I+ F GH+A VL + + +++F S
Sbjct: 171 TRLITGSGDQTCVLWDVT------TGQRISIFGSEFPSGHTADVLSLSINSLNANMFISG 224
Query: 205 AEDGLLNIWDYEKVGKKVE 223
+ D + +WD + V
Sbjct: 225 SCDTTVRLWDLRITSRAVR 243
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 181 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 214
+GHS V + W+P+K+ + S+++DG L +W+
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIV-SASQDGRLIVWN 94
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 89/216 (41%), Gaps = 23/216 (10%)
Query: 2 EILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQD-HITSSATD--PATAKSAGSS 58
ILTGH + L + E +++G D +V +W + + ++ A ++
Sbjct: 167 RILTGHTGSV---LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN 223
Query: 59 GSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLIL 118
G ++ S A + R + GH V V F + S D + +
Sbjct: 224 GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKV 280
Query: 119 WDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI 178
W+ T ++ H + C+ + D L+++GS+DN++R++D G+ +
Sbjct: 281 WNT--STCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIE------CGACL 329
Query: 179 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 214
EGH V C+++ + S A DG + +WD
Sbjct: 330 RVLEGHEELVRCIRFDNKR---IVSGAYDGKIKVWD 362
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 12/76 (15%)
Query: 139 LHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS 198
++C+ + DD I++G DN+++++D+ L + GH+ +VLC+Q+ ++
Sbjct: 136 VYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRI------LTGHTGSVLCLQYD-ERV 185
Query: 199 SVFGSSAEDGLLNIWD 214
+ GSS D + +WD
Sbjct: 186 IITGSS--DSTVRVWD 199
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 55/110 (50%), Gaps = 14/110 (12%)
Query: 105 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF 164
Q+ S D+ + +WD T ++ H + C+ + D+ +I+TGS+D++VR++
Sbjct: 144 QKIVSGLRDNTIKIWDK--NTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVW 198
Query: 165 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 214
D G +N H AVL ++++ + + + ++D + +WD
Sbjct: 199 D------VNTGEMLNTLIHHCEAVLHLRFN---NGMMVTCSKDRSIAVWD 239
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 10/132 (7%)
Query: 87 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNP 146
+ GH V V F P + Q S G D+ L +W+ + G AH + CV ++P
Sbjct: 105 FLGHTKDVLSVAFSPDNRQ-IVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSP 162
Query: 147 -LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA 205
LD +I++G DN V+++D G + +GH+ V V SPD S+ SS
Sbjct: 163 SLDAPVIVSGGWDNLVKVWDL------ATGRLVTDLKGHTNYVTSVTVSPD-GSLCASSD 215
Query: 206 EDGLLNIWDYEK 217
+DG+ +WD K
Sbjct: 216 KDGVARLWDLTK 227
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
+ N ++ S D+S+R+++ +N G KF GH+ VL V +SPD + S D
Sbjct: 78 NGNFAVSASWDHSLRLWNLQN------GQCQYKFLGHTKDVLSVAFSPDNRQIV-SGGRD 130
Query: 208 GLLNIWDYE 216
L +W+ +
Sbjct: 131 NALRVWNVK 139
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 85/215 (39%), Gaps = 50/215 (23%)
Query: 14 ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND 73
++A+ PT+PYVLSG D +V LW+ +++ T
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-------------------------- 135
Query: 74 KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK 133
+ GHE V V F P F S D + +W T P +
Sbjct: 136 -------------FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-PNFTLTT 181
Query: 134 AHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 192
+ ++ VD+ PL D ++T S D +++++D + S + EGH + V
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT------KSCVATLEGHMSNVSFAV 235
Query: 193 WSPDKSSVFGSSAEDGLLNIWDYE--KVGKKVEQG 225
+ P + S +EDG L IW+ KV K + G
Sbjct: 236 FHPTLPIII-SGSEDGTLKIWNSSTYKVEKTLNVG 269
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 82/203 (40%), Gaps = 14/203 (6%)
Query: 19 PTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDK---A 75
PTEP+VL+ V LW+ + + + ++ +G I + G+D
Sbjct: 23 PTEPWVLTTLYSGRVELWNYETQVEVRSIQ--VTETPVRAGKFIARKNWIIVGSDDFRIR 80
Query: 76 ADGPSVGPRGI-YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA 134
+ G + + + H D + + P+ S DD + LW+ + + +
Sbjct: 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWE-NNWALEQTFEG 138
Query: 135 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 194
H+ + CV +NP D + +G D +V+++ T N + G V V +
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-----TGQERGVNYVDYY 193
Query: 195 PDKSSVFGSSAEDGL-LNIWDYE 216
P + +A D L + IWDY+
Sbjct: 194 PLPDKPYMITASDDLTIKIWDYQ 216
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 85/215 (39%), Gaps = 50/215 (23%)
Query: 14 ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND 73
++A+ PT+PYVLSG D +V LW+ +++ T
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-------------------------- 135
Query: 74 KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK 133
+ GHE V V F P F S D + +W T P +
Sbjct: 136 -------------FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-PNFTLTT 181
Query: 134 AHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 192
+ ++ VD+ PL D ++T S D +++++D + S + EGH + V
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT------KSCVATLEGHMSNVSFAV 235
Query: 193 WSPDKSSVFGSSAEDGLLNIWDYE--KVGKKVEQG 225
+ P + S +EDG L IW+ KV K + G
Sbjct: 236 FHPTLPIII-SGSEDGTLKIWNSSTYKVEKTLNVG 269
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 82/203 (40%), Gaps = 14/203 (6%)
Query: 19 PTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDK---A 75
PTEP+VL+ V LW+ + + + ++ +G I + G+D
Sbjct: 23 PTEPWVLTTLYSGRVELWNYETQVEVRSIQ--VTETPVRAGKFIARKNWIIVGSDDFRIR 80
Query: 76 ADGPSVGPRGI-YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA 134
+ G + + + H D + + P+ S DD + LW+ + + +
Sbjct: 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWE-NNWALEQTFEG 138
Query: 135 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 194
H+ + CV +NP D + +G D +V+++ T N + G V V +
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-----TGQERGVNYVDYY 193
Query: 195 PDKSSVFGSSAEDGL-LNIWDYE 216
P + +A D L + IWDY+
Sbjct: 194 PLPDKPYMITASDDLTIKIWDYQ 216
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 41/245 (16%)
Query: 3 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLW-----------SIQDHITSSATDPAT 51
IL GH+ + ++L P+ ++SG D++V +W SI+D +T+ A P
Sbjct: 160 ILQGHEQDI-YSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD 218
Query: 52 AK--SAGSSGSIIKQ-SPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 108
K +AGS ++ + G ++ G GH+D+V V F Q
Sbjct: 219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESG-----TGHKDSVYSVVFT-RDGQSVV 272
Query: 109 SVGDDSCLILW---------DARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN 159
S D + LW D++ S +V D +D IL+GS D
Sbjct: 273 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 332
Query: 160 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS-----SVFGSSAEDGLLNIWD 214
V +D+++ G+P+ +GH +V+ V + S +VF + + D IW
Sbjct: 333 GVLFWDKKS------GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 386
Query: 215 YEKVG 219
Y+K+
Sbjct: 387 YKKIA 391
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 70/172 (40%), Gaps = 35/172 (20%)
Query: 5 TGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQ 64
TGH+D+ +++ V+SG D+SV LW++Q+ A KS
Sbjct: 253 TGHKDSV-YSVVFTRDGQSVVSGSLDRSVKLWNLQN---------ANNKS---------D 293
Query: 65 SPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG 124
S P G + Y GH+D V V + + S D ++ WD + G
Sbjct: 294 SKTPNSGTCEVT----------YIGHKDFVLSVA-TTQNDEYILSGSKDRGVLFWDKKSG 342
Query: 125 TSPVIKVEKAHDADLHCVDWNPL----DDNLILTGSADNSVRMFDRRNLTSN 172
+P++ ++ ++ + N + N+ TGS D R++ + + N
Sbjct: 343 -NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKIAPN 393
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 80/202 (39%), Gaps = 48/202 (23%)
Query: 14 ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND 73
++A+ PT+PYVLSG D +V LW+ +++ T
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-------------------------- 135
Query: 74 KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK 133
+ GHE V V F P F S D + +W T P +
Sbjct: 136 -------------FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-PNFTLTT 181
Query: 134 AHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 192
+ ++ VD+ PL D ++T S D +++++D + S + EGH + V
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ------TKSCVATLEGHMSNVSFAV 235
Query: 193 WSPDKSSVFGSSAEDGLLNIWD 214
+ P + S +EDG L IW+
Sbjct: 236 FHPTLPIII-SGSEDGTLKIWN 256
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 82/203 (40%), Gaps = 14/203 (6%)
Query: 19 PTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDK---A 75
PTEP+VL+ V LW+ + + + ++ +G I + G+D
Sbjct: 23 PTEPWVLTTLYSGRVELWNYETQVEVRSIQ--VTETPVRAGKFIARKNWIIVGSDDFRIR 80
Query: 76 ADGPSVGPRGI-YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA 134
+ G + + + H D + + P+ S DD + LW+ + + +
Sbjct: 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWE-NNWALEQTFEG 138
Query: 135 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 194
H+ + CV +NP D + +G D +V+++ T N + G V V +
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT-----GQERGVNYVDYY 193
Query: 195 PDKSSVFGSSAEDGL-LNIWDYE 216
P + +A D L + IWDY+
Sbjct: 194 PLPDKPYMITASDDLTIKIWDYQ 216
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 90/229 (39%), Gaps = 61/229 (26%)
Query: 3 ILTGHQD-----NAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGS 57
IL GH D A F+ P ++SG +DK+V++W +
Sbjct: 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLY------------------ 57
Query: 58 SGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC---SVGDDS 114
++ +G P GH V D+ +QE C S D
Sbjct: 58 ---------------EEEQNGYFGIPHKALTGHNHFVSDLAL----SQENCFAISSSWDK 98
Query: 115 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV 174
L LWD R GT+ K H ++++ V ++P D+ IL+ A+ ++++ N+
Sbjct: 99 TLRLWDLRTGTT--YKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLW---NILGECK 152
Query: 175 GSPINKFEGHSAAVLCVQWSPDKSSV---------FGSSAEDGLLNIWD 214
S K E HS V CV++SP S F S DG L +W+
Sbjct: 153 FSSAEK-ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN 200
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 93/238 (39%), Gaps = 37/238 (15%)
Query: 4 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIK 63
GHQ +++A P +LS G ++ + LW+I S+ A ++ S ++
Sbjct: 114 FVGHQSEV-YSVAFSPDNRQILSAGAEREIKLWNILGECKFSS---AEKENHSDWVSCVR 169
Query: 64 QSPKPGDGNDKAADGP---SVG-------------PRGIYNGHEDTVEDVTFCPSSAQEF 107
SP N P SVG R + HE V ++ P + +
Sbjct: 170 YSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISP-NGKYI 228
Query: 108 CSVGDDSCLILWDARVGTSPVIKVEKAHDA--DLHCVDWNPLDDNLILTGSADNSVRMFD 165
+ G D L++WD T P ++ DA ++ + +NP + G+ D V++F+
Sbjct: 229 ATGGKDKKLLIWDILNLTYP----QREFDAGSTINQIAFNP-KLQWVAVGT-DQGVKIFN 282
Query: 166 RRNLTSNGV----GSPINKFEGHSAA---VLCVQWSPDKSSVFGSSAEDGLLNIWDYE 216
+ V PI K EG + W+ +F + DG++ + +E
Sbjct: 283 LMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLF-AGFTDGVIRTFSFE 339
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 26/148 (17%)
Query: 81 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV--------- 131
V RGI GH D V + S + +DS +++ +R T + K+
Sbjct: 11 VVKRGILEGHSDWVTSIVAGFSQKE-----NEDSPVLISGSRDKTVMIWKLYEEEQNGYF 65
Query: 132 ---EKAHDADLHCVDWNPL--DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 186
KA H V L ++ ++ S D ++R++D R G+ +F GH +
Sbjct: 66 GIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLR------TGTTYKRFVGHQS 119
Query: 187 AVLCVQWSPDKSSVFGSSAEDGLLNIWD 214
V V +SPD + + AE + +W+
Sbjct: 120 EVYSVAFSPDNRQILSAGAERE-IKLWN 146
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 80/202 (39%), Gaps = 48/202 (23%)
Query: 14 ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND 73
++A+ PT+PYVLSG D +V LW+ +++ T
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-------------------------- 135
Query: 74 KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK 133
+ GHE V V F P F S D + +W T P +
Sbjct: 136 -------------FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-PNFTLTT 181
Query: 134 AHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 192
+ ++ VD+ PL D ++T S D +++++D + S + EGH + V
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ------TKSCVATLEGHMSNVSFAV 235
Query: 193 WSPDKSSVFGSSAEDGLLNIWD 214
+ P + S +EDG L IW+
Sbjct: 236 FHPTLPIII-SGSEDGTLKIWN 256
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 82/203 (40%), Gaps = 14/203 (6%)
Query: 19 PTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDK---A 75
PTEP+VL+ V +W+ + + + ++ +G I + G+D
Sbjct: 23 PTEPWVLTTLYSGRVEIWNYETQVEVRSIQ--VTETPVRAGKFIARKNWIIVGSDDFRIR 80
Query: 76 ADGPSVGPRGI-YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA 134
+ G + + + H D + + P+ S DD + LW+ + + +
Sbjct: 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWE-NNWALEQTFEG 138
Query: 135 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 194
H+ + CV +NP D + +G D +V+++ T N + G V V +
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT-----GQERGVNYVDYY 193
Query: 195 PDKSSVFGSSAEDGL-LNIWDYE 216
P + +A D L + IWDY+
Sbjct: 194 PLPDKPYMITASDDLTIKIWDYQ 216
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 74/179 (41%), Gaps = 14/179 (7%)
Query: 84 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV-GTSPVIKVEKAHD-ADLHC 141
R I N T+ VTF + E +V L +WD R G P + D LHC
Sbjct: 184 RTIDNADSSTLHAVTFLRTP--EILTVNSIGQLKIWDFRQQGNEPSQILSLTGDRVPLHC 241
Query: 142 VDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVF 201
VD +P +++ TG D + ++D R T P++ + H A + V + P
Sbjct: 242 VDRHPNQQHVVATGGQDGMLSIWDVRQGTM-----PVSLLKAHEAEMWEVHFHPSNPEHL 296
Query: 202 GSSAEDGLLNIWDYE----KVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP 256
+ +EDG L WD + QG R++ + + A V+ W ++DP
Sbjct: 297 FTCSEDGSLWHWDASTDVPEKSSLFHQGGRSSTFLSHSISNQANVHQSVIS-SWLSTDP 354
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 19/151 (12%)
Query: 106 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD 165
E +VG+D + L+ A V ++ A + LH V + L ILT ++ ++++D
Sbjct: 162 EIVTVGEDGRINLFRAD-HKEAVRTIDNADSSTLHAVTF--LRTPEILTVNSIGQLKIWD 218
Query: 166 RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG 225
R S I G + CV P++ V + +DG+L+IWD V QG
Sbjct: 219 FRQ--QGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWD-------VRQG 269
Query: 226 PRTTNYPAGLFFQHAGHRDKVVDFHWNASDP 256
P L H ++ + H++ S+P
Sbjct: 270 ----TMPVSLL---KAHEAEMWEVHFHPSNP 293
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 81/198 (40%), Gaps = 40/198 (20%)
Query: 23 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG 82
Y+LSGG D +VL+ +++ SS T K+ S G D P V
Sbjct: 58 YMLSGGSDGVIVLYDLEN---SSRQSYYTCKAVCSIGR----------------DHPDV- 97
Query: 83 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR-VGTSPVIKVEKAHDADLHC 141
H +VE V + P F S D L +WD + T+ V E+ ++
Sbjct: 98 -------HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEET----VYS 146
Query: 142 VDWNPLDDN--LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS 199
+P+ L+ G+ V++ D ++ GS + +GH +L V WSP
Sbjct: 147 HHMSPVSTKHCLVAVGTRGPKVQLCDLKS------GSCSHILQGHRQEILAVSWSPRYDY 200
Query: 200 VFGSSAEDGLLNIWDYEK 217
+ +++ D + +WD +
Sbjct: 201 ILATASADSRVKLWDVRR 218
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 15/95 (15%)
Query: 131 VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN-----------LTSNGVGSPIN 179
VE+ H ++ +D P++ +L+G +D + ++D N + S G P
Sbjct: 38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHP-- 95
Query: 180 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 214
+ H +V VQW P + +F SS+ D L +WD
Sbjct: 96 --DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWD 128
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 76/191 (39%), Gaps = 36/191 (18%)
Query: 90 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD 149
H+D V V+ S Q S D C+ +WD + V+ +AH A + CV +P D
Sbjct: 126 HDDIVSTVSVLSSGTQAV-SGSKDICIKVWD--LAQQVVLSSYRAHAAQVTCVAASPHKD 182
Query: 150 NLILTGSADNSVRMFDRRN-LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 208
++ L+ S DN + ++D R ++ +G + S A W P +S VF E+G
Sbjct: 183 SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLA-----WHPQQSEVFVFGDENG 237
Query: 209 LLNIWDYEKVGKKVEQG------------PRTTNYPAGL---------------FFQHAG 241
+++ D + + P + + A L F+
Sbjct: 238 TVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQA 297
Query: 242 HRDKVVDFHWN 252
HRD V D W+
Sbjct: 298 HRDFVRDATWS 308
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 9/142 (6%)
Query: 113 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN 172
DS L LW S D+ + +DW+ +N I+ G+ DN N +N
Sbjct: 44 DSSLELWSLLAADSEKPIASLQVDSKFNDLDWS--HNNKIIAGALDNGSLELYSTNEANN 101
Query: 173 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYP 232
+ S + +F HS++V V+++ + +V S +G + IWD K + +NY
Sbjct: 102 AINS-MARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTES------PSNYT 154
Query: 233 AGLFFQHAGHRDKVVDFHWNAS 254
Q D+V+ WN S
Sbjct: 155 PLTPGQSMSSVDEVISLAWNQS 176
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/118 (16%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 112 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS 171
+D +++WD R +P+ + + H + +DW D++L+L+ DN+V +++ +
Sbjct: 238 NDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES--- 294
Query: 172 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT 229
+++F +++P+ +F ++ D + + + + +++ T
Sbjct: 295 ---AEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETET 349
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 135 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG-SPINKFEGHSAA--VLCV 191
H + + V +N DN++ +G + + ++D T + +P+ + S+ V+ +
Sbjct: 112 HSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISL 171
Query: 192 QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKV 222
W+ + VF S+ +IWD K K+V
Sbjct: 172 AWNQSLAHVFASAGSSNFASIWDL-KAKKEV 201
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 129 IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK----FEGH 184
+ + H A + + W P +DN+I +GS D +V +++ + G+ P+ + EGH
Sbjct: 74 VPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWE---IPDGGLVLPLREPVITLEGH 130
Query: 185 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP 226
+ V V W P +V S+ D ++ +WD + GP
Sbjct: 131 TKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGP 172
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 79 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDAD 138
P P GH V V + P++ S G D+ +++WD G + + H
Sbjct: 119 PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDT 178
Query: 139 LHCVDWNPLDDNLILTGSADNSVRMFDRRNLT 170
++ VDW+ D LI T D VR+ + R T
Sbjct: 179 IYSVDWS-RDGALICTSCRDKRVRVIEPRKGT 209
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 16/140 (11%)
Query: 86 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG------TSPVIKVEKAHDADL 139
+ GH V D+ + P + S +D +++W+ G PVI +E H +
Sbjct: 76 LVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE-GHTKRV 134
Query: 140 HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF--EGHSAAVLCVQWSPDK 197
V W+P N++L+ DN + ++D G G+ + + H + V WS D
Sbjct: 135 GIVAWHPTAQNVLLSAGXDNVILVWD------VGTGAAVLTLGPDVHPDTIYSVDWSRD- 187
Query: 198 SSVFGSSAEDGLLNIWDYEK 217
++ +S D + + + K
Sbjct: 188 GALICTSCRDKRVRVIEPRK 207
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 13/158 (8%)
Query: 85 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA---HDADLHC 141
G G + V F PS S DD+ + +++ P K + H +H
Sbjct: 141 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG-----PPFKFKSTFGEHTKFVHS 195
Query: 142 VDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-KFEGHSAAVLCVQWSPDKSSV 200
V +NP D +L + D ++ +++ + T GV + K HS +V + WSPD + +
Sbjct: 196 VRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI 254
Query: 201 FGSSAEDGLLNIWDYE--KVGKKVEQGPRTTNYPAGLF 236
+SA D + IW+ KV K + G R + G+
Sbjct: 255 ASASA-DKTIKIWNVATLKVEKTIPVGTRIEDQQLGII 291
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 70/180 (38%), Gaps = 45/180 (25%)
Query: 77 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK--- 133
+GP + + H V V + P + F S G D ++L++ GT + +
Sbjct: 176 EGPPFKFKSTFGEHTKFVHSVRYNPDGSL-FASTGGDGTIVLYNGVDGTKTGVFEDDSLK 234
Query: 134 --AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL---------------------- 169
AH + + W+P D I + SAD ++++++ L
Sbjct: 235 NVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT 293
Query: 170 -------TSNG--------VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 214
++NG +GS GH+ A+ + S D ++F + AE G +N WD
Sbjct: 294 KQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAE-GHINSWD 352
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 179 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 217
N + H+A V CV WSPD + S ++ ++ +W+ K
Sbjct: 530 NSWTFHTAKVACVSWSPDNVRLATGSLDNSVI-VWNMNK 567
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 135 HDADLHCVDWNPLDDNLILTGSADNSVRMFD 165
H A + CV W+P D+ + TGS DNSV +++
Sbjct: 535 HTAKVACVSWSP-DNVRLATGSLDNSVIVWN 564
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 18/141 (12%)
Query: 89 GHEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
GHE V V + P S D +++W G I V H A ++ V W P
Sbjct: 51 GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
Query: 148 DDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP----------- 195
+ L+L S+D V + + + NG SPI + H+ V W+P
Sbjct: 111 EYGPLLLVASSDGKVSVVEFKE---NGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 196 -DKSSVFGSSAEDGLLNIWDY 215
+S F + D L+ IW Y
Sbjct: 167 TKESRKFVTGGADNLVKIWKY 187
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 23/116 (19%)
Query: 125 TSPVIKVEKAHDADLHCVDWNPL------------DDNLILTGSADNSVRMFDRRNLTSN 172
TSP+I AH ++ W P + +TG ADN V+++ +
Sbjct: 136 TSPIII--DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT 193
Query: 173 GVGSPINKFEGHSAAVLCVQWSPD--KSSVFGSSAEDGLLNIWDYEKVGKKVEQGP 226
V + EGHS V V WSP S S ++D IW + EQGP
Sbjct: 194 YVLE--STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN-----EQGP 242
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 18/141 (12%)
Query: 89 GHEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
GHE V V + P S D +++W G I V H A ++ V W P
Sbjct: 53 GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH 112
Query: 148 DDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP----------- 195
+ L+L S+D V + + + NG SPI + H+ V W+P
Sbjct: 113 EYGPLLLVASSDGKVSVVEFKE---NGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 168
Query: 196 -DKSSVFGSSAEDGLLNIWDY 215
+S F + D L+ IW Y
Sbjct: 169 TKESRKFVTGGADNLVKIWKY 189
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 23/116 (19%)
Query: 125 TSPVIKVEKAHDADLHCVDWNPL------------DDNLILTGSADNSVRMFDRRNLTSN 172
TSP+I AH ++ W P + +TG ADN V+++ +
Sbjct: 138 TSPIII--DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT 195
Query: 173 GVGSPINKFEGHSAAVLCVQWSPD--KSSVFGSSAEDGLLNIWDYEKVGKKVEQGP 226
V + EGHS V V WSP S S ++D IW + EQGP
Sbjct: 196 YVLE--STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN-----EQGP 244
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 48/203 (23%)
Query: 15 LAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND 73
+A P P +LS +DK++++W + T+
Sbjct: 21 IATTPQFPDMILSASRDKTIIMWKLTRDETNYGI-------------------------- 54
Query: 74 KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD-DSCLILWDARVGTSPVIKVE 132
P+ GH V DV SS +F G D L LWD GT+ V
Sbjct: 55 ---------PQRALRGHSHFVSDVVI--SSDGQFALSGSWDGTLRLWDLTTGTTTRRFV- 102
Query: 133 KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 192
H D+ V ++ D+ I++GS D ++++++ + GV + E HS V CV+
Sbjct: 103 -GHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWN-----TLGVCKYTVQDESHSEWVSCVR 155
Query: 193 WSPDKSS-VFGSSAEDGLLNIWD 214
+SP+ S+ + S D L+ +W+
Sbjct: 156 FSPNSSNPIIVSCGWDKLVKVWN 178
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 9/171 (5%)
Query: 84 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVD 143
RG GH V + P S D +I+W + ++A H V
Sbjct: 8 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVS 67
Query: 144 WNPL--DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVF 201
+ D L+GS D ++R++D LT+ G+ +F GH+ VL V +S D +
Sbjct: 68 DVVISSDGQFALSGSWDGTLRLWD---LTT---GTTTRRFVGHTKDVLSVAFSSDNRQIV 121
Query: 202 GSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN 252
S + D + +W+ V K Q + + + + F +V W+
Sbjct: 122 -SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWD 171
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 48/203 (23%)
Query: 15 LAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND 73
+A P P +LS +DK++++W + T+
Sbjct: 44 IATTPQFPDMILSASRDKTIIMWKLTRDETNYGI-------------------------- 77
Query: 74 KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD-DSCLILWDARVGTSPVIKVE 132
P+ GH V DV SS +F G D L LWD GT+ V
Sbjct: 78 ---------PQRALRGHSHFVSDVVI--SSDGQFALSGSWDGTLRLWDLTTGTTTRRFV- 125
Query: 133 KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 192
H D+ V ++ D+ I++GS D ++++++ + GV + E HS V CV+
Sbjct: 126 -GHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWN-----TLGVCKYTVQDESHSEWVSCVR 178
Query: 193 WSPDKSS-VFGSSAEDGLLNIWD 214
+SP+ S+ + S D L+ +W+
Sbjct: 179 FSPNSSNPIIVSCGWDKLVKVWN 201
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 9/171 (5%)
Query: 84 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVD 143
RG GH V + P S D +I+W + ++A H V
Sbjct: 31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVS 90
Query: 144 WNPL--DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVF 201
+ D L+GS D ++R++D LT+ G+ +F GH+ VL V +S D +
Sbjct: 91 DVVISSDGQFALSGSWDGTLRLWD---LTT---GTTTRRFVGHTKDVLSVAFSSDNRQIV 144
Query: 202 GSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN 252
S + D + +W+ V K Q + + + + F +V W+
Sbjct: 145 -SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWD 194
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 56/141 (39%), Gaps = 18/141 (12%)
Query: 89 GHEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
GHE V V + P S D +++W G I V H A ++ V W P
Sbjct: 51 GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
Query: 148 DDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP----------- 195
+ ++L S+D V + + + NG SPI + H+ V W+P
Sbjct: 111 EYGPMLLVASSDGKVSVVEFKE---NGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 196 -DKSSVFGSSAEDGLLNIWDY 215
+S F + D L+ IW Y
Sbjct: 167 TKESRKFVTGGADNLVKIWKY 187
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 23/116 (19%)
Query: 125 TSPVIKVEKAHDADLHCVDWNPL------------DDNLILTGSADNSVRMFDRRNLTSN 172
TSP+I AH ++ W P + +TG ADN V+++ +
Sbjct: 136 TSPIII--DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT 193
Query: 173 GVGSPINKFEGHSAAVLCVQWSPD--KSSVFGSSAEDGLLNIWDYEKVGKKVEQGP 226
V + EGHS V V WSP S S ++D IW + EQGP
Sbjct: 194 YVLE--STLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN-----EQGP 242
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 134 AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK----FEGHSAAVL 189
H A + + W P +DN+I +GS D +V +++ + G+ P+ + EGH+ V
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWE---IPDGGLVLPLREPVITLEGHTKRVG 135
Query: 190 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP 226
V W P +V S+ D ++ +WD + GP
Sbjct: 136 IVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP 172
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 16/137 (11%)
Query: 89 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG------TSPVIKVEKAHDADLHCV 142
GH V D+ +CP + S +D +++W+ G PVI +E H + V
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE-GHTKRVGIV 137
Query: 143 DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF--EGHSAAVLCVQWSPDKSSV 200
W+P N++L+ DN + ++D G G+ + + H + V WS D ++
Sbjct: 138 AWHPTAQNVLLSAGCDNVILVWD------VGTGAAVLTLGPDVHPDTIYSVDWSRD-GAL 190
Query: 201 FGSSAEDGLLNIWDYEK 217
+S D + + + K
Sbjct: 191 ICTSCRDKRVRVIEPRK 207
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 79 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDAD 138
P P GH V V + P++ S G D+ +++WD G + + H
Sbjct: 119 PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT 178
Query: 139 LHCVDWNPLDDNLILTGSADNSVRMFDRRNLT 170
++ VDW+ D LI T D VR+ + R T
Sbjct: 179 IYSVDWS-RDGALICTSCRDKRVRVIEPRKGT 209
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 19/146 (13%)
Query: 89 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV----------GTSP----VIKVEKA 134
GHE TV + F PS Q S DD + +W + G+ P + +
Sbjct: 192 GHESTVWSLAFDPS-GQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGF 250
Query: 135 HDADLHCVDWNPLDDNLILTGSADNSVRMFDR---RNLTSNGVGSPINKFEGHSAAVLCV 191
H ++ + W L L T D+++R+F + + + HS V CV
Sbjct: 251 HSRTIYDIAWCQLTGALA-TACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV 309
Query: 192 QWSPDKSSVFGSSAEDGLLNIWDYEK 217
W+P + + S ++DG + W Y++
Sbjct: 310 AWNPKEPGLLASCSDDGEVAFWKYQR 335
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 82/216 (37%), Gaps = 15/216 (6%)
Query: 6 GHQDNAEFALAMCPTEPYVLSGGKDKSVVLWS------IQDHITSSATDPATAKSAGS-S 58
H D+ + LA P + S G D+ + +W I + S K A S
Sbjct: 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC 72
Query: 59 GSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLIL 118
G+ + + + GHE+ V+ V + P S + D + +
Sbjct: 73 GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWV 131
Query: 119 WDA-RVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP 177
W+ + V +H D+ V W+P L+ + S D++V+++ R + V
Sbjct: 132 WEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLY--REEEDDWVCCA 188
Query: 178 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIW 213
EGH + V + + P + S ++D + IW
Sbjct: 189 T--LEGHESTVWSLAFDPSGQRL-ASCSDDRTVRIW 221
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 9/136 (6%)
Query: 85 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDW 144
G GH V + + S + S G+D+ + +WDAR K H+A + V W
Sbjct: 211 GTLQGHSSEVCGLAW-RSDGLQLASGGNDNVVQIWDARSSIPKFTKTN--HNAAVKAVAW 267
Query: 145 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSS 204
P NL+ TG M + + + G+ +N + S V + WSP + +
Sbjct: 268 CPWQSNLLATGGGT----MDKQIHFWNAATGARVNTVDAGS-QVTSLIWSPHSKEIMSTH 322
Query: 205 A-EDGLLNIWDYEKVG 219
D L+IW Y G
Sbjct: 323 GFPDNNLSIWSYSSSG 338
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 13/136 (9%)
Query: 84 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVD 143
R + H D V F Q S G D L ++ A G ++ + KAH+ ++ C
Sbjct: 608 RLVVRPHTDAVYHACF-SQDGQRIASCGADKTLQVFKAETG-EKLLDI-KAHEDEVLCCA 664
Query: 144 WNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS--VF 201
++ DD+ I T SAD V+++D + G ++ ++ HS V C ++ +KS+ +
Sbjct: 665 FSS-DDSYIATCSADKKVKIWD------SATGKLVHTYDEHSEQVNCCHFT-NKSNHLLL 716
Query: 202 GSSAEDGLLNIWDYEK 217
+ + D L +WD +
Sbjct: 717 ATGSNDFFLKLWDLNQ 732
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 13/133 (9%)
Query: 87 YNGHEDTVEDVTFCPSSAQEFCSVG-DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN 145
Y+ H + V F S + G +D L LWD + H ++ ++
Sbjct: 695 YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD--LNQKECRNTMFGHTNSVNHCRFS 752
Query: 146 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF--------EGHSAAVLCVQWSPDK 197
P DD L+ + SAD ++R++D R+ + +F E V C WS D
Sbjct: 753 P-DDELLASCSADGTLRLWDVRSANERK-SINVKRFFLSSEDPPEDVEVIVKCCSWSADG 810
Query: 198 SSVFGSSAEDGLL 210
+ ++ LL
Sbjct: 811 DKIIVAAKNKVLL 823
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 76/183 (41%), Gaps = 47/183 (25%)
Query: 70 DGNDKAADGPS--VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP 127
DG K + P+ V G+ GH+ V + F + + S +DS + +W+ + G
Sbjct: 982 DGAIKIIELPNNRVFSSGV--GHKKAVRHIQF-TADGKTLISSSEDSVIQVWNWQTGDYV 1038
Query: 128 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD------RRNLT----------- 170
++ AH + D+ L D+ +L+ S D +V++++ R+ T
Sbjct: 1039 FLQ---AHQETVK--DFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAI 1093
Query: 171 -------------------SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLN 211
S + SP+++ +GH+ V C +S D + + ++G +
Sbjct: 1094 SSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD-GILLATGDDNGEIR 1152
Query: 212 IWD 214
IW+
Sbjct: 1153 IWN 1155
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 27/97 (27%)
Query: 155 GSADNSVRMFDRRN--LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNI 212
G D ++++ + N + S+GVG H AV +Q++ D ++ SS+ED ++ +
Sbjct: 979 GDEDGAIKIIELPNNRVFSSGVG--------HKKAVRHIQFTADGKTLI-SSSEDSVIQV 1029
Query: 213 WDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF 249
W+++ T +Y +F Q H++ V DF
Sbjct: 1030 WNWQ-----------TGDY---VFLQ--AHQETVKDF 1050
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 13/136 (9%)
Query: 84 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVD 143
R + H D V F Q S G D L ++ A G ++ + KAH+ ++ C
Sbjct: 615 RLVVRPHTDAVYHACF-SQDGQRIASCGADKTLQVFKAETG-EKLLDI-KAHEDEVLCCA 671
Query: 144 WNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS--VF 201
++ DD+ I T SAD V+++D + G ++ ++ HS V C ++ +KS+ +
Sbjct: 672 FSS-DDSYIATCSADKKVKIWD------SATGKLVHTYDEHSEQVNCCHFT-NKSNHLLL 723
Query: 202 GSSAEDGLLNIWDYEK 217
+ + D L +WD +
Sbjct: 724 ATGSNDFFLKLWDLNQ 739
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 13/133 (9%)
Query: 87 YNGHEDTVEDVTFCPSSAQEFCSVG-DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN 145
Y+ H + V F S + G +D L LWD + H ++ ++
Sbjct: 702 YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD--LNQKECRNTMFGHTNSVNHCRFS 759
Query: 146 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF--------EGHSAAVLCVQWSPDK 197
P DD L+ + SAD ++R++D R+ + +F E V C WS D
Sbjct: 760 P-DDELLASCSADGTLRLWDVRSANERK-SINVKRFFLSSEDPPEDVEVIVKCCSWSADG 817
Query: 198 SSVFGSSAEDGLL 210
+ ++ LL
Sbjct: 818 DKIIVAAKNKVLL 830
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 76/183 (41%), Gaps = 47/183 (25%)
Query: 70 DGNDKAADGPS--VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP 127
DG K + P+ V G+ GH+ V + F + + S +DS + +W+ + G
Sbjct: 989 DGAIKIIELPNNRVFSSGV--GHKKAVRHIQF-TADGKTLISSSEDSVIQVWNWQTGDYV 1045
Query: 128 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD------RRNLT----------- 170
++ AH + D+ L D+ +L+ S D +V++++ R+ T
Sbjct: 1046 FLQ---AHQETVK--DFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAI 1100
Query: 171 -------------------SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLN 211
S + SP+++ +GH+ V C +S D + + ++G +
Sbjct: 1101 SSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD-GILLATGDDNGEIR 1159
Query: 212 IWD 214
IW+
Sbjct: 1160 IWN 1162
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 27/97 (27%)
Query: 155 GSADNSVRMFDRRN--LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNI 212
G D ++++ + N + S+GVG H AV +Q++ D ++ SS+ED ++ +
Sbjct: 986 GDEDGAIKIIELPNNRVFSSGVG--------HKKAVRHIQFTADGKTLI-SSSEDSVIQV 1036
Query: 213 WDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF 249
W+++ T +Y +F Q H++ V DF
Sbjct: 1037 WNWQ-----------TGDY---VFLQ--AHQETVKDF 1057
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 18/141 (12%)
Query: 89 GHEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
GHE V V + P S D +++W G I V H A ++ V W P
Sbjct: 51 GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
Query: 148 DDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP----------- 195
+ L+L S+D V + + + NG SPI + H+ V W+P
Sbjct: 111 EYGPLLLVASSDGKVSVVEFKE---NGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 196 -DKSSVFGSSAEDGLLNIWDY 215
+S F + D L+ IW Y
Sbjct: 167 TKESRKFVTGGADNLVKIWKY 187
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 23/116 (19%)
Query: 125 TSPVIKVEKAHDADLHCVDWNPL------------DDNLILTGSADNSVRMFDRRNLTSN 172
TSP+I AH ++ W P + +TG ADN V+++ +
Sbjct: 136 TSPIII--DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT 193
Query: 173 GVGSPINKFEGHSAAVLCVQWSPD--KSSVFGSSAEDGLLNIWDYEKVGKKVEQGP 226
V + EGHS V V WSP S S ++D IW + EQGP
Sbjct: 194 YVLE--STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN-----EQGP 242
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 18/132 (13%)
Query: 86 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN 145
+ GH+D V +T S DD+ L +W A G ++ H + W+
Sbjct: 113 VLKGHDDHV--ITCLQFCGNRIVSGSDDNTLKVWSAVTG--KCLRTLVGHTGGV----WS 164
Query: 146 P-LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSS 204
+ DN+I++GS D ++++++ G I+ GH++ V C+ +K V GS
Sbjct: 165 SQMRDNIIISGSTDRTLKVWNAET------GECIHTLYGHTSTVRCMHLH-EKRVVSGS- 216
Query: 205 AEDGLLNIWDYE 216
D L +WD E
Sbjct: 217 -RDATLRVWDIE 227
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 93/223 (41%), Gaps = 31/223 (13%)
Query: 1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQD----HITSSATDPATAKSAG 56
+ L GH M E V+SG +D ++ +W I+ H+ A +
Sbjct: 192 IHTLYGHTSTVR---CMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHV--AAVRCVQ 246
Query: 57 SSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCL 116
G + D K D + GH + V + F S D+ +
Sbjct: 247 YDGRRVVSGAY--DFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSI 301
Query: 117 ILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS 176
+WD G I H + ++ L DN++++G+AD++V+++D + G
Sbjct: 302 RVWDVETGNC--IHTLTGHQSLTSGME---LKDNILVSGNADSTVKIWDIKT------GQ 350
Query: 177 PINKFEG---HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE 216
+ +G H +AV C+Q+ +K+ V +S++DG + +WD +
Sbjct: 351 CLQTLQGPNKHQSAVTCLQF--NKNFVI-TSSDDGTVKLWDLK 390
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
Query: 113 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN 172
D L +W+A G I H + + C+ L + +++GS D ++R++D
Sbjct: 178 DRTLKVWNAETG--ECIHTLYGHTSTVRCMH---LHEKRVVSGSRDATLRVWDIET---- 228
Query: 173 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE 216
G ++ GH AAV CVQ+ + S A D ++ +WD E
Sbjct: 229 --GQCLHVLMGHVAAVRCVQYDGRRVV---SGAYDFMVKVWDPE 267
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 63/170 (37%), Gaps = 24/170 (14%)
Query: 87 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-AHDADLHCVDWN 145
YN H V V CP F S G+D ++LWD R P +++ A D V W+
Sbjct: 177 YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR-KPKPATRIDFCASDTIPTSVTWH 235
Query: 146 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA 205
P D+ G +V + + +N S + HS + + +S S S +
Sbjct: 236 PEKDDTFACGDETGNVSLVNIKNPDSAQTSAV------HSQNITGLAYSYHSSPFLASIS 289
Query: 206 EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASD 255
ED + + D + F+ HRD V W+ D
Sbjct: 290 EDCTVAVLDAD----------------FSEVFRDLSHRDFVTGVAWSPLD 323
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
D ++G D SV+++D L+ V + + HS+ V CV P K ++F S ED
Sbjct: 150 DGTQAVSGGKDFSVKVWD---LSQKAV---LKSYNAHSSEVNCVAACPGKDTIFLSCGED 203
Query: 208 GLLNIWDYEK 217
G + +WD K
Sbjct: 204 GRILLWDTRK 213
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 90 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD 149
H+D V+ ++ Q S G D + +WD + V+K AH ++++CV P D
Sbjct: 138 HDDIVKTLSVFSDGTQAV-SGGKDFSVKVWD--LSQKAVLKSYNAHSSEVNCVAACPGKD 194
Query: 150 NLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL--CVQWSPDKSSVFGSSAED 207
+ L+ D + ++D R P + + ++ + V W P+K F E
Sbjct: 195 TIFLSCGEDGRILLWDTRK------PKPATRIDFCASDTIPTSVTWHPEKDDTFACGDET 248
Query: 208 G---LLNI 212
G L+NI
Sbjct: 249 GNVSLVNI 256
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 53/141 (37%), Gaps = 18/141 (12%)
Query: 89 GHEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
GHE V V + P S D + +W G I V H A ++ V W P
Sbjct: 51 GHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
Query: 148 DDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP----------- 195
+ +L S+D V + + NG SPI + H+ V W+P
Sbjct: 111 EYGPXLLVASSDGKVSVVE---FKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 196 -DKSSVFGSSAEDGLLNIWDY 215
+S F + D L+ IW Y
Sbjct: 167 TKESRKFVTGGADNLVKIWKY 187
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 23/116 (19%)
Query: 125 TSPVIKVEKAHDADLHCVDWNPL------------DDNLILTGSADNSVRMFDRRNLTSN 172
TSP+I AH ++ W P + +TG ADN V+++ +
Sbjct: 136 TSPIII--DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT 193
Query: 173 GVGSPINKFEGHSAAVLCVQWSPD--KSSVFGSSAEDGLLNIWDYEKVGKKVEQGP 226
V + EGHS V V WSP S S ++D IW + EQGP
Sbjct: 194 YVLE--STLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDN-----EQGP 242
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 60/156 (38%), Gaps = 25/156 (16%)
Query: 89 GHEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 147
GHE V V + P S D +I+W GT HD+ ++ V W P
Sbjct: 55 GHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPH 114
Query: 148 DDNLILT-GSADNSVRMFDRRNLTSNGVGS-PINKF-EGHSAAVLCVQWS---------- 194
D LIL GS+D ++ + LT G G + K H+ V W+
Sbjct: 115 DYGLILACGSSDGAISL-----LTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLID 169
Query: 195 ------PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQ 224
P+ F S D L+ +W E+ G+ E+
Sbjct: 170 HPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEE 205
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 18/105 (17%)
Query: 152 ILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS-PDKSSVFGSSAEDGLL 210
+ T S+D SV++FD R NG I GH V V W+ P ++ S + D +
Sbjct: 28 LATCSSDRSVKIFDVR----NGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 83
Query: 211 NIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASD 255
IW + E G ++ +HAGH V W D
Sbjct: 84 IIW-------REENGTWEKSH------EHAGHDSSVNSVCWAPHD 115
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 9/133 (6%)
Query: 84 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVD 143
+G H D V + +A S D +ILW ++ H V+
Sbjct: 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVE 434
Query: 144 WNPL--DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVF 201
L D L+GS D +R++D G +F GH+ VL V +S D +
Sbjct: 435 DVVLSSDGQFALSGSWDGELRLWDL------AAGVSTRRFVGHTKDVLSVAFSLDNRQIV 488
Query: 202 GSSAEDGLLNIWD 214
S++ D + +W+
Sbjct: 489 -SASRDRTIKLWN 500
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 81/198 (40%), Gaps = 55/198 (27%)
Query: 24 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP 83
++S +DKS++LW + +DKA V
Sbjct: 398 IVSASRDKSIILWKLTK-------------------------------DDKAY---GVAQ 423
Query: 84 RGIYNGHEDTVEDVTFCPSSAQEFCSVGD-DSCLILWDARVGTSPVIKVEKAHDADLHCV 142
R + GH VEDV SS +F G D L LWD G S V H D+ V
Sbjct: 424 RRL-TGHSHFVEDVVL--SSDGQFALSGSWDGELRLWDLAAGVSTRRFV--GHTKDVLSV 478
Query: 143 DWNPLDDNLILTGSADNSVRMFD-----RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 197
++ LD+ I++ S D ++++++ + ++ G EGH V CV++SP+
Sbjct: 479 AFS-LDNRQIVSASRDRTIKLWNTLGECKYTISEGG--------EGHRDWVSCVRFSPNT 529
Query: 198 -SSVFGSSAEDGLLNIWD 214
S++ D + +W+
Sbjct: 530 LQPTIVSASWDKTVKVWN 547
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 13/134 (9%)
Query: 83 PRGIYNGHEDTVEDVTFCPSSAQEFCSVG--DDSCLILWDARVGTSPVIKVEKAHDADLH 140
P + H+ V+ V +CP + + G D + +W+ V + + AH + +
Sbjct: 279 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN--VCSGACLSAVDAH-SQVC 335
Query: 141 CVDWNPLDDNLILT-GSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS 199
+ W+P LI G A N + ++ + + + + +GH++ VL + SPD ++
Sbjct: 336 SILWSPHYKELISGHGFAQNQLVIWKYPTM------AKVAELKGHTSRVLSLTMSPDGAT 389
Query: 200 VFGSSAEDGLLNIW 213
V S+A D L +W
Sbjct: 390 V-ASAAADETLRLW 402
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 12/108 (11%)
Query: 107 FCSVGDDSCLI-LWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD 165
+ +VG S + LWD V ++ +H A + + WN ++ +GS + D
Sbjct: 172 YLAVGTSSAEVQLWD--VQQQKRLRNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHHD 226
Query: 166 RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIW 213
R + + GHS V ++W+PD S D L+N+W
Sbjct: 227 VRVAEHH-----VATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVW 268
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 13/134 (9%)
Query: 83 PRGIYNGHEDTVEDVTFCPSSAQEFCSVG--DDSCLILWDARVGTSPVIKVEKAHDADLH 140
P + H+ V+ V +CP + + G D + +W+ V + + AH + +
Sbjct: 268 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN--VCSGACLSAVDAH-SQVC 324
Query: 141 CVDWNPLDDNLIL-TGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS 199
+ W+P LI G A N + ++ + + + + +GH++ VL + SPD ++
Sbjct: 325 SILWSPHYKELISGHGFAQNQLVIWKYPTM------AKVAELKGHTSRVLSLTMSPDGAT 378
Query: 200 VFGSSAEDGLLNIW 213
V S+A D L +W
Sbjct: 379 V-ASAAADETLRLW 391
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 12/108 (11%)
Query: 107 FCSVGDDSCLI-LWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD 165
+ +VG S + LWD V ++ +H A + + WN ++ +GS + D
Sbjct: 161 YLAVGTSSAEVQLWD--VQQQKRLRNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHHD 215
Query: 166 RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIW 213
R + + GHS V ++W+PD S D L+N+W
Sbjct: 216 VRVAEHH-----VATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVW 257
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 13/134 (9%)
Query: 83 PRGIYNGHEDTVEDVTFCPSSAQEFCSVG--DDSCLILWDARVGTSPVIKVEKAHDADLH 140
P + H+ V+ V +CP + + G D + +W+ V + + AH + +
Sbjct: 188 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN--VCSGACLSAVDAH-SQVC 244
Query: 141 CVDWNPLDDNLILT-GSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS 199
+ W+P LI G A N + ++ + + + + +GH++ VL + SPD ++
Sbjct: 245 SILWSPHYKELISGHGFAQNQLVIWKYPTM------AKVAELKGHTSRVLSLTMSPDGAT 298
Query: 200 VFGSSAEDGLLNIW 213
V S+A D L +W
Sbjct: 299 V-ASAAADETLRLW 311
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 12/108 (11%)
Query: 107 FCSVGDDSCLI-LWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD 165
+ +VG S + LWD V ++ +H A + + WN ++ +GS + D
Sbjct: 81 YLAVGTSSAEVQLWD--VQQQKRLRNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHHD 135
Query: 166 RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIW 213
R + + GHS V ++W+PD S D L+N+W
Sbjct: 136 VRVAEHH-----VATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVW 177
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 19/135 (14%)
Query: 86 IYN--GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA--HDADLHC 141
+YN H +V D S +F + D + LW VIK +D H
Sbjct: 135 VYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ----NDKVIKTFSGIHNDVVRHL 190
Query: 142 VDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVF 201
+DD ++ S D +++ D G + +EGH + V C++ P+ V
Sbjct: 191 A---VVDDGHFISCSNDGLIKLVDXHT------GDVLRTYEGHESFVYCIKLLPNGDIV- 240
Query: 202 GSSAEDGLLNIWDYE 216
S ED + IW E
Sbjct: 241 -SCGEDRTVRIWSKE 254
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 64/168 (38%), Gaps = 14/168 (8%)
Query: 4 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA---TDPATAKSAGSSGS 60
L H + A + +E L+ DK++ LW I + + D + G
Sbjct: 138 LQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH 197
Query: 61 IIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWD 120
I S DG K D + Y GHE V + P+ + S G+D + +W
Sbjct: 198 FISCS---NDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNG--DIVSCGEDRTVRIWS 252
Query: 121 ARVGT-SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR 167
G+ VI + + C + I+ GS+DN VR+F +
Sbjct: 253 KENGSLKQVITLPAISIWSVDCXS-----NGDIIVGSSDNLVRIFSQE 295
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 149 DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS-SVFGSSAED 207
D ILT S D + ++D + G + F GH A VLC+ +P ++ + F S D
Sbjct: 166 DMQILTASGDGTCALWDVES------GQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCD 219
Query: 208 GLLNIWD 214
+WD
Sbjct: 220 KKAMVWD 226
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 181 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 214
+GH VLC+ W DK + SS++DG + +WD
Sbjct: 60 LKGHGNKVLCMDWCKDKRRIV-SSSQDGKVIVWD 92
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 16 AMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII--------KQSPK 67
A P+ YV GG D +++++ T + + AG +G + +
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLK---TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS 160
Query: 68 PGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP 127
GD D + + GH V ++ P + + F S D+ LWD R G
Sbjct: 161 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCR 219
Query: 128 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR 167
+ H++D++ + + P + N TGS D + R+FD R
Sbjct: 220 --QTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLR 256
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 181 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK 220
GH A + + W D S + S+++DG L IWD K
Sbjct: 51 LRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNK 89
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 16 AMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII--------KQSPK 67
A P+ YV GG D +++++ T + + AG +G + +
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLK---TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS 160
Query: 68 PGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP 127
GD D + + GH V ++ P + + F S D+ LWD R G
Sbjct: 161 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCR 219
Query: 128 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR 167
+ H++D++ + + P + N TGS D + R+FD R
Sbjct: 220 --QTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLR 256
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 181 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK 220
GH A + + W D S + S+++DG L IWD K
Sbjct: 51 LRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNK 89
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 16 AMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII--------KQSPK 67
A P+ YV GG D +++++ T + + AG +G + +
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLK---TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS 160
Query: 68 PGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP 127
GD D + + GH V ++ P + + F S D+ LWD R G
Sbjct: 161 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCR 219
Query: 128 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR 167
+ H++D++ + + P + N TGS D + R+FD R
Sbjct: 220 --QTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLR 256
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 181 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK 220
GH A + + W D S + S+++DG L IWD K
Sbjct: 51 LRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNK 89
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 16 AMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII--------KQSPK 67
A P+ YV GG D +++++ T + + AG +G + +
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLK---TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS 160
Query: 68 PGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP 127
GD D + + GH V ++ P + + F S D+ LWD R G
Sbjct: 161 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCR 219
Query: 128 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR 167
+ H++D++ + + P + N TGS D + R+FD R
Sbjct: 220 --QTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLR 256
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 181 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK 220
GH A + + W D S + S+++DG L IWD K
Sbjct: 51 LRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNK 89
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 16 AMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII--------KQSPK 67
A P+ YV GG D +++++ T + + AG +G + +
Sbjct: 115 AYAPSGNYVACGGLDNICSIYNLK---TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS 171
Query: 68 PGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP 127
GD D + + GH V ++ P + + F S D+ LWD R G
Sbjct: 172 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCR 230
Query: 128 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR 167
+ H++D++ + + P + N TGS D + R+FD R
Sbjct: 231 --QTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLR 267
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 181 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK 220
GH A + + W D S + S+++DG L IWD K
Sbjct: 62 LRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNK 100
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 207
D + +G+ D + +FD G ++ EGH+ + + +SPD S + ++++D
Sbjct: 175 DGKYLASGAIDGIINIFDI------ATGKLLHTLEGHAMPIRSLTFSPD-SQLLVTASDD 227
Query: 208 GLLNIWDYE 216
G + I+D +
Sbjct: 228 GYIKIYDVQ 236
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 123 VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 182
+ T ++ + H + + ++P D L++T S D ++++D ++ G
Sbjct: 193 IATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGT------LS 245
Query: 183 GHSAAVLCVQWSPDKS 198
GH++ VL V + PD +
Sbjct: 246 GHASWVLNVAFCPDDT 261
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 10/157 (6%)
Query: 13 FALAMCPTEPYVLSGGKDKSVVLWSIQD----HITSSATDPATAKSAGSSGSIIKQSPKP 68
++A P Y+ SG D + ++ I H P + + ++ +
Sbjct: 168 LSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD- 226
Query: 69 GDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV 128
DG K D G +GH V +V FCP F S D + +WD VGT
Sbjct: 227 -DGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTH-FVSSSSDKSVKVWD--VGTRTC 282
Query: 129 IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD 165
+ H + V +N ++ G D + ++D
Sbjct: 283 VHTFFDHQDQVWGVKYNGNGSKIVSVGD-DQEIHIYD 318
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 41/199 (20%), Positives = 72/199 (36%), Gaps = 17/199 (8%)
Query: 4 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQ----DHITSSATDPATAKSAGSSG 59
L+GH+ + P ++S +D ++ +W + + TD S SG
Sbjct: 104 LSGHRSPVTRVI-FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 60 SIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILW 119
++ D K D +GH+ V V+ P+ S D + +W
Sbjct: 163 KLLASCS--ADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMW 219
Query: 120 DARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN 179
+ + G +K H + V N D LI + S D +VR++
Sbjct: 220 EVQTGY--CVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKA------ 270
Query: 180 KFEGHSAAVLCVQWSPDKS 198
+ H V C+ W+P+ S
Sbjct: 271 ELREHRHVVECISWAPESS 289
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 11/115 (9%)
Query: 111 GDDSCLILWDARVGTSPVIKVEKAHDA-DLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 169
G+ S L +WD T P IK E A + + +P D + + +D ++ ++D N
Sbjct: 116 GEASTLSIWDLAAPT-PRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQ 173
Query: 170 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQ 224
T + +F+GH+ C+ S D + ++ + D + WD + G++++Q
Sbjct: 174 TL------VRQFQGHTDGASCIDISNDGTKLW-TGGLDNTVRSWDLRE-GRQLQQ 220
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 132 EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 169
EK H A + ++NP D L+ T S D +V+++D RN+
Sbjct: 199 EKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNI 236
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 90 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR-VGTSPVIKVEKAHDADLHCVDWNPLD 148
H+ V F P + D+ + LWD R + E H+ ++ +NP D
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 261
Query: 149 DNLILTGSADNSVRMF 164
+LT N +R++
Sbjct: 262 STKLLTTDQRNEIRVY 277
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 132 EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 169
EK H A + ++NP D L+ T S D +V+++D RN+
Sbjct: 200 EKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNI 237
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 90 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR-VGTSPVIKVEKAHDADLHCVDWNPLD 148
H+ V F P + D+ + LWD R + E H+ ++ +NP D
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 262
Query: 149 DNLILTGSADNSVRMF 164
+LT N +R++
Sbjct: 263 STKLLTTDQRNEIRVY 278
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 141 CVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSV 200
C+ W+ D N I+TG + +R++++ G+ +N H A ++ V+W+ D + +
Sbjct: 113 CLAWSH-DGNSIVTGVENGELRLWNK-------TGALLNVLNFHRAPIVSVKWNKDGTHI 164
Query: 201 FGSSAED 207
E+
Sbjct: 165 ISMDVEN 171
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 149 DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 208
+ L+L+ S D ++R++ G G+ N F GHS +++ W D + S + DG
Sbjct: 259 NKLLLSASDDGTLRIW------HGGNGNSQNCFYGHSQSIVSASWVGDDKVI--SCSMDG 310
Query: 209 LLNIWDYEK 217
+ +W ++
Sbjct: 311 SVRLWSLKQ 319
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 135 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 194
HD + CVDW P N I+T S D + ++++R +G + A V+WS
Sbjct: 54 HDKIVTCVDWAP-KSNRIVTCSQDRNAYVYEKR---PDGTWKQTLVLLRLNRAATFVRWS 109
Query: 195 PDK 197
P++
Sbjct: 110 PNE 112
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 30.8 bits (68), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 10/114 (8%)
Query: 125 TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 184
T IK H ++ + ++P D NL+L+ S D+++R++ N+ ++ + + EGH
Sbjct: 104 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW---NIQTDTLVAIFGGVEGH 160
Query: 185 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWD------YEKVGKKVEQGPRTTNYP 232
VL + + S D L +W + + + P TN P
Sbjct: 161 RDEVLSADYDLLGEKIM-SCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRP 213
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 87 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI--KVEKAHDADLHCVDW 144
Y GH + + ++ F P SV D L LW+ + T I VE H ++ D+
Sbjct: 111 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE-GHRDEVLSADY 169
Query: 145 NPLDDNLILTGSADNSVRMF 164
+ L + ++ G D+S++++
Sbjct: 170 DLLGEKIMSCG-MDHSLKLW 188
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 30.8 bits (68), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 10/114 (8%)
Query: 125 TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 184
T IK H ++ + ++P D NL+L+ S D+++R++ N+ ++ + + EGH
Sbjct: 103 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW---NIQTDTLVAIFGGVEGH 159
Query: 185 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWD------YEKVGKKVEQGPRTTNYP 232
VL + + S D L +W + + + P TN P
Sbjct: 160 RDEVLSADYDLLGEKIM-SCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRP 212
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 87 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI--KVEKAHDADLHCVDW 144
Y GH + + ++ F P SV D L LW+ + T I VE H ++ D+
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE-GHRDEVLSADY 168
Query: 145 NPLDDNLILTGSADNSVRMF 164
+ L + ++ G D+S++++
Sbjct: 169 DLLGEKIMSCG-MDHSLKLW 187
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 10/114 (8%)
Query: 125 TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 184
T IK H ++ + ++P D NL+L+ S D+++R++ N+ ++ + + EGH
Sbjct: 103 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW---NIQTDTLVAIFGGVEGH 159
Query: 185 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWD------YEKVGKKVEQGPRTTNYP 232
VL + + S D L +W + + + P TN P
Sbjct: 160 RDEVLSADYDLLGEKIM-SCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRP 212
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 87 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI--KVEKAHDADLHCVDW 144
Y GH + + ++ F P SV D L LW+ + T I VE H ++ D+
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE-GHRDEVLSADY 168
Query: 145 NPLDDNLILTGSADNSVRMF 164
+ L + ++ G D+S++++
Sbjct: 169 DLLGEKIMSCG-MDHSLKLW 187
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 10/114 (8%)
Query: 125 TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 184
T IK H ++ + ++P D NL+L+ S D+++R++ N+ ++ + + EGH
Sbjct: 140 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW---NIQTDTLVAIFGGVEGH 196
Query: 185 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWD------YEKVGKKVEQGPRTTNYP 232
VL + + S D L +W + + + P TN P
Sbjct: 197 RDEVLSADYDLLGEKIM-SCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRP 249
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 87 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI--KVEKAHDADLHCVDW 144
Y GH + + ++ F P SV D L LW+ + T I VE H ++ D+
Sbjct: 147 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE-GHRDEVLSADY 205
Query: 145 NPLDDNLILTGSADNSVRMF 164
+ L + ++ G D+S++++
Sbjct: 206 DLLGEKIMSCG-MDHSLKLW 224
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 10/114 (8%)
Query: 125 TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 184
T IK H ++ + ++P D NL+L+ S D+++R++ N+ ++ + + EGH
Sbjct: 99 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW---NIQTDTLVAIFGGVEGH 155
Query: 185 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWD------YEKVGKKVEQGPRTTNYP 232
VL + + S D L +W + + + P TN P
Sbjct: 156 RDEVLSADYDLLGEKIM-SCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRP 208
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 87 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI--KVEKAHDADLHCVDW 144
Y GH + + ++ F P SV D L LW+ + T I VE H ++ D+
Sbjct: 106 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE-GHRDEVLSADY 164
Query: 145 NPLDDNLILTGSADNSVRMF 164
+ L + ++ G D+S++++
Sbjct: 165 DLLGEKIMSCG-MDHSLKLW 183
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 147 LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE 206
+DN ++TG+ D +R++D N + + GH V ++++ V GS+
Sbjct: 130 FEDNYVITGADDKXIRVYDSIN------KKFLLQLSGHDGGVWALKYAHGGILVSGST-- 181
Query: 207 DGLLNIWDYEK 217
D + +WD +K
Sbjct: 182 DRTVRVWDIKK 192
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 147 LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE 206
+DN ++TG+ D +R++D N + + GH V ++++ V GS+
Sbjct: 130 FEDNYVITGADDKMIRVYDSIN------KKFLLQLSGHDGGVWALKYAHGGILVSGST-- 181
Query: 207 DGLLNIWDYEK 217
D + +WD +K
Sbjct: 182 DRTVRVWDIKK 192
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 69/154 (44%), Gaps = 20/154 (12%)
Query: 75 AADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR-------VGTSP 127
A + S+ + + ED ED+ CS D I+ A+ + TS
Sbjct: 781 ANERKSINVKQFFLNLEDPQEDMEVIVKC----CSWSADGARIMVAAKNKIFLFDIHTSG 836
Query: 128 VI-KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 186
++ ++ H + + D++P ++L + + V +++ + S + GH +
Sbjct: 837 LLGEIHTGHHSTIQYCDFSP-QNHLAVVALSQYCVELWNTDS------RSKVADCRGHLS 889
Query: 187 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK 220
V V +SPD SS F +S++D + +W+ +KV K
Sbjct: 890 WVHGVMFSPDGSS-FLTSSDDQTIRLWETKKVCK 922
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 17/135 (12%)
Query: 87 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLI-LWDARVGTSPVIKVEKAHDADLHCVDWN 145
Y+ H + V F SS + G C + LWD + H ++ ++
Sbjct: 701 YDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWD--LNQKECRNTMFGHTNSVNHCRFS 758
Query: 146 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN--KF--------EGHSAAVLCVQWSP 195
P DD L+ + SAD +++++D TS IN +F E V C WS
Sbjct: 759 P-DDKLLASCSADGTLKLWDA---TSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSA 814
Query: 196 DKSSVFGSSAEDGLL 210
D + + ++ L
Sbjct: 815 DGARIMVAAKNKIFL 829
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 30/135 (22%)
Query: 89 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS---------PVIKVEKAHDADL 139
GH++TV+D +S S D + +W+ G V+ + +HDA
Sbjct: 1048 GHQETVKDFRLLKNS--RLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDA-- 1103
Query: 140 HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS 199
+ SAD + +++ S + P+++ GH+ V C +S D S+
Sbjct: 1104 ----------TKFSSTSADKTAKIW------SFDLLLPLHELRGHNGCVRCSAFSVD-ST 1146
Query: 200 VFGSSAEDGLLNIWD 214
+ + ++G + IW+
Sbjct: 1147 LLATGDDNGEIRIWN 1161
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 88/210 (41%), Gaps = 38/210 (18%)
Query: 24 VLSGGKDKSVVLWSIQ-----------DHITSSATDPATAKSAGSSGSIIKQSPKPGDGN 72
++SG +DK++ +W+I+ D ++ P K+ S +II GN
Sbjct: 122 IISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVP-NEKADDDSVTIISA------GN 174
Query: 73 DKAADGPSVGPRGI---YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI 129
DK ++ I + GH + +T P S G D ++LW+ + +
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL-IASAGKDGEIMLWN--LAAKKAM 231
Query: 130 KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF--DRRNLTSNGVGSPINKFEGHSAA 187
A D ++ + ++P + L + +++F D + L V +F G+SAA
Sbjct: 232 YTLSAQD-EVFSLAFSP--NRYWLAAATATGIKVFSLDPQYL----VDDLRPEFAGYSAA 284
Query: 188 ----VLCVQWSPDKSSVFGSSAEDGLLNIW 213
+ + WS D ++F + D ++ +W
Sbjct: 285 AEPHAVSLAWSADGQTLF-AGYTDNVIRVW 313
>pdb|4FHL|A Chain A, Nucleoporin Nup37 From Schizosaccharomyces Pombe
pdb|4FHM|A Chain A, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
pdb|4FHN|A Chain A, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|C Chain C, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 394
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 89 GHEDTVEDVTFCPS-------SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHC 141
GH + V D+ + Q SVGDD LI+W R+ I +
Sbjct: 135 GHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW--RLTDEGPILAGYPLSSPGIS 192
Query: 142 VDWNPLDDNLILTGSADNSVRMFD 165
V + P + N ++ G + ++R+FD
Sbjct: 193 VQFRPSNPNQLIVGERNGNIRIFD 216
>pdb|4GQ1|A Chain A, Nup37 Of S. Pombe
pdb|4GQ2|P Chain P, S. Pombe Nup120-Nup37 Complex
Length = 393
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 89 GHEDTVEDVTFCPS-------SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHC 141
GH + V D+ + Q SVGDD LI+W R+ I +
Sbjct: 134 GHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW--RLTDEGPILAGYPLSSPGIS 191
Query: 142 VDWNPLDDNLILTGSADNSVRMFD 165
V + P + N ++ G + ++R+FD
Sbjct: 192 VQFRPSNPNQLIVGERNGNIRIFD 215
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 95/251 (37%), Gaps = 56/251 (22%)
Query: 1 MEILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWS-------------IQDH---ITS 44
+ I+ GH++ + +A Y+ + +DKSV +W +Q+H +
Sbjct: 100 LAIIEGHENEVK-GVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKH 158
Query: 45 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 104
P+ A A SS + K D + + + NGHE TV F +
Sbjct: 159 VIWHPSEALLASSSYDDTVRIWKDYDDDWECV--------AVLNGHEGTVWSSDFDKTEG 210
Query: 105 Q-EFCSVGDDSCLILW--------DARVGTSPVIKVEKAHDADLHCVDW--NPL------ 147
CS DDS + +W D + I + H ++ V W N L
Sbjct: 211 VFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAI-LPDVHKRQVYNVAWGFNGLIASVGA 269
Query: 148 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQW-SPDKSSVFGSSAE 206
D L + D ++F +R L +GV IN V+W + ++ + +
Sbjct: 270 DGVLAVYEEVDGEWKVFAKRALC-HGV-YEIN----------VVKWLELNGKTILATGGD 317
Query: 207 DGLLNIWDYEK 217
DG++N W EK
Sbjct: 318 DGIVNFWSLEK 328
>pdb|2J04|A Chain A, The Tau60-Tau91 Subcomplex Of Yeast Transcription Factor
Iiic
pdb|2J04|C Chain C, The Tau60-Tau91 Subcomplex Of Yeast Transcription Factor
Iiic
Length = 588
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 140 HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 183
HC +WNP++ + I+ G+ D ++ F R N +P FE
Sbjct: 133 HCFEWNPIESS-IVVGNEDGELQFFSIR---KNSENTPEFYFES 172
>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|E Chain E, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 447
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 144 WNPLDDNLILTGSADNSVRMFDR 166
WN D++++TGS +N RMFDR
Sbjct: 350 WNG-SDSVVMTGSYNNFFRMFDR 371
>pdb|2ZE5|A Chain A, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase
pdb|2ZE6|A Chain A, Crystal Structure Of Adenosine
Phosphate-isopentenyltransferase Complexed With
Substrate Analog, Dmaspp
pdb|2ZE7|A Chain A, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With Zinc Ion
And Substrate Analog, Dmaspp
pdb|2ZE8|A Chain A, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With
Diphosphate
pdb|2ZE8|B Chain B, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With
Diphosphate
pdb|2ZE8|C Chain C, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With
Diphosphate
pdb|2ZE8|D Chain D, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With
Diphosphate
Length = 253
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 117 ILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA 157
I D+R T ++ E AH + VDW ++ LIL G +
Sbjct: 59 IYLDSRPLTEGILDAESAHRRLIFEVDWRKSEEGLILEGGS 99
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 87/210 (41%), Gaps = 38/210 (18%)
Query: 24 VLSGGKDKSVVLWSIQ-----------DHITSSATDPATAKSAGSSGSIIKQSPKPGDGN 72
++SG +DK++ +W+I+ D ++ P K+ S +II GN
Sbjct: 122 IISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVP-NEKADDDSVTIISA------GN 174
Query: 73 DKAADGPSVGPRGI---YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI 129
DK ++ I + GH + +T P S G D ++LW+ + +
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL-IASAGKDGEIMLWN--LAAKKAM 231
Query: 130 KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF--DRRNLTSNGVGSPINKFEGHSAA 187
A D ++ + ++P + L + +++F D + L V +F G+S A
Sbjct: 232 YTLSAQD-EVFSLAFSP--NRYWLAAATATGIKVFSLDPQYL----VDDLRPEFAGYSKA 284
Query: 188 ----VLCVQWSPDKSSVFGSSAEDGLLNIW 213
+ + WS D ++F + D ++ +W
Sbjct: 285 AEPHAVSLAWSADGQTLF-AGYTDNVIRVW 313
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 87/210 (41%), Gaps = 38/210 (18%)
Query: 24 VLSGGKDKSVVLWSIQ-----------DHITSSATDPATAKSAGSSGSIIKQSPKPGDGN 72
++SG +DK++ +W+I+ D ++ P K+ S +II GN
Sbjct: 122 IISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVP-NEKADDDSVTIISA------GN 174
Query: 73 DKAADGPSVGPRGI---YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI 129
DK ++ I + GH + +T P S G D ++LW+ + +
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL-IASAGKDGEIMLWN--LAAKKAM 231
Query: 130 KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF--DRRNLTSNGVGSPINKFEGHSAA 187
A D ++ + ++P + L + +++F D + L V +F G+S A
Sbjct: 232 YTLSAQD-EVFSLAFSP--NRYWLAAATATGIKVFSLDPQYL----VDDLRPEFAGYSKA 284
Query: 188 ----VLCVQWSPDKSSVFGSSAEDGLLNIW 213
+ + WS D ++F + D ++ +W
Sbjct: 285 AEPHAVSLAWSADGQTLF-AGYTDNVIRVW 313
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 87/210 (41%), Gaps = 38/210 (18%)
Query: 24 VLSGGKDKSVVLWSIQ-----------DHITSSATDPATAKSAGSSGSIIKQSPKPGDGN 72
++SG +DK++ +W+I+ D ++ P K+ S +II GN
Sbjct: 116 IISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVP-NEKADDDSVTIISA------GN 168
Query: 73 DKAADGPSVGPRGI---YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI 129
DK ++ I + GH + +T P S G D ++LW+ + +
Sbjct: 169 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL-IASAGKDGEIMLWN--LAAKKAM 225
Query: 130 KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF--DRRNLTSNGVGSPINKFEGHSAA 187
A D ++ + ++P + L + +++F D + L V +F G+S A
Sbjct: 226 YTLSAQD-EVFSLAFSP--NRYWLAAATATGIKVFSLDPQYL----VDDLRPEFAGYSKA 278
Query: 188 ----VLCVQWSPDKSSVFGSSAEDGLLNIW 213
+ + WS D ++F + D ++ +W
Sbjct: 279 AEPHAVSLAWSADGQTLF-AGYTDNVIRVW 307
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 87/210 (41%), Gaps = 38/210 (18%)
Query: 24 VLSGGKDKSVVLWSIQ-----------DHITSSATDPATAKSAGSSGSIIKQSPKPGDGN 72
++SG +DK++ +W+I+ D ++ P K+ S +II GN
Sbjct: 122 IISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVP-NEKADDDSVTIISA------GN 174
Query: 73 DKAADGPSVGPRGI---YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI 129
DK ++ I + GH + +T P S G D ++LW+ + +
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL-IASAGKDGEIMLWN--LAAKKAM 231
Query: 130 KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF--DRRNLTSNGVGSPINKFEGHSAA 187
A D ++ + ++P + L + +++F D + L V +F G+S A
Sbjct: 232 YTLSAQD-EVFSLAFSP--NRYWLAAATATGIKVFSLDPQYL----VDDLRPEFAGYSKA 284
Query: 188 ----VLCVQWSPDKSSVFGSSAEDGLLNIW 213
+ + WS D ++F + D ++ +W
Sbjct: 285 AEPHAVSLAWSADGQTLF-AGYTDNVIRVW 313
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,759,758
Number of Sequences: 62578
Number of extensions: 409293
Number of successful extensions: 1381
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 976
Number of HSP's gapped (non-prelim): 293
length of query: 309
length of database: 14,973,337
effective HSP length: 99
effective length of query: 210
effective length of database: 8,778,115
effective search space: 1843404150
effective search space used: 1843404150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 51 (24.3 bits)