Your job contains 1 sequence.
>021660
MAEAETVSLMDFDEDENQNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRD
IVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDV
VRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ
VNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKAL
NILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLAL
VDIVREVTM
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 021660
(309 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2204710 - symbol:RFC3 "replication factor C su... 1212 2.7e-123 1
MGI|MGI:1919401 - symbol:Rfc5 "replication factor C (acti... 861 4.3e-86 1
RGD|1309280 - symbol:Rfc5 "replication factor C (activato... 861 4.3e-86 1
UNIPROTKB|Q32PI3 - symbol:RFC5 "Uncharacterized protein" ... 854 2.4e-85 1
UNIPROTKB|F1RKG3 - symbol:RFC5 "Uncharacterized protein" ... 854 2.4e-85 1
ZFIN|ZDB-GENE-040907-1 - symbol:rfc5 "replication factor ... 854 2.4e-85 1
UNIPROTKB|P40937 - symbol:RFC5 "Replication factor C subu... 853 3.0e-85 1
UNIPROTKB|E2RCF4 - symbol:RFC5 "Uncharacterized protein" ... 846 1.7e-84 1
UNIPROTKB|J9NUF8 - symbol:RFC5 "Uncharacterized protein" ... 846 1.7e-84 1
DICTYBASE|DDB_G0282235 - symbol:rfc5 "replication factor ... 814 4.1e-81 1
POMBASE|SPAC27E2.10c - symbol:rfc3 "DNA replication facto... 784 6.2e-78 1
FB|FBgn0032244 - symbol:RfC3 "Replication factor C subuni... 777 3.4e-77 1
ASPGD|ASPL0000017750 - symbol:AN8064 species:162425 "Emer... 626 2.6e-69 2
SGD|S000005234 - symbol:RFC3 "Subunit of heteropentameric... 689 7.2e-68 1
WB|WBGene00018409 - symbol:F44B9.8 species:6239 "Caenorha... 678 1.1e-66 1
GENEDB_PFALCIPARUM|PF14_0601 - symbol:PF14_0601 "replicat... 650 9.7e-64 1
UNIPROTKB|Q8IKK4 - symbol:PF14_0601 "Replication factor C... 650 9.7e-64 1
CGD|CAL0003213 - symbol:RCF3 species:5476 "Candida albica... 634 4.8e-62 1
UNIPROTKB|F8W9B4 - symbol:RFC5 "Replication factor C subu... 627 2.7e-61 1
DICTYBASE|DDB_G0286027 - symbol:rfc4 "replication factor ... 551 3.0e-53 1
WB|WBGene00004338 - symbol:rfc-2 species:6239 "Caenorhabd... 542 2.7e-52 1
UNIPROTKB|F1NEW1 - symbol:RFC4 "Uncharacterized protein" ... 526 1.3e-50 1
UNIPROTKB|F1NIY0 - symbol:RFC4 "Uncharacterized protein" ... 526 1.3e-50 1
SGD|S000005454 - symbol:RFC4 "Subunit of heteropentameric... 523 2.8e-50 1
ZFIN|ZDB-GENE-040824-3 - symbol:rfc4 "replication factor ... 520 5.8e-50 1
UNIPROTKB|P53033 - symbol:RFC2 "Replication factor C subu... 517 1.2e-49 1
DICTYBASE|DDB_G0291868 - symbol:rfc2 "replication factor ... 516 1.5e-49 1
UNIPROTKB|P35249 - symbol:RFC4 "Replication factor C subu... 515 2.0e-49 1
RGD|1310142 - symbol:Rfc4 "replication factor C (activato... 515 2.0e-49 1
ZFIN|ZDB-GENE-050306-29 - symbol:rfc2 "replication factor... 515 2.0e-49 1
UNIPROTKB|C9JZI1 - symbol:RFC4 "Replication factor C subu... 511 5.2e-49 1
UNIPROTKB|E2R2M6 - symbol:RFC4 "Uncharacterized protein" ... 510 6.7e-49 1
ASPGD|ASPL0000039105 - symbol:AN2969 species:162425 "Emer... 509 8.5e-49 1
UNIPROTKB|Q29RS9 - symbol:RFC4 "Uncharacterized protein" ... 509 8.5e-49 1
UNIPROTKB|P35250 - symbol:RFC2 "Replication factor C subu... 509 8.5e-49 1
MGI|MGI:2146571 - symbol:Rfc4 "replication factor C (acti... 509 8.5e-49 1
RGD|621198 - symbol:Rfc2 "replication factor C (activator... 509 8.5e-49 1
MGI|MGI:1341868 - symbol:Rfc2 "replication factor C (acti... 508 1.1e-48 1
UNIPROTKB|Q05B83 - symbol:RFC2 "Replication factor C subu... 507 1.4e-48 1
UNIPROTKB|F1SFI3 - symbol:RFC4 "Uncharacterized protein" ... 507 1.4e-48 1
UNIPROTKB|E2QSU1 - symbol:RFC2 "Uncharacterized protein" ... 504 2.9e-48 1
UNIPROTKB|F6ULR2 - symbol:RFC2 "Uncharacterized protein" ... 504 2.9e-48 1
TAIR|locus:2015233 - symbol:RFC2 "replication factor C 2"... 502 4.7e-48 1
FB|FBgn0030871 - symbol:CG8142 species:7227 "Drosophila m... 499 9.8e-48 1
FB|FBgn0260985 - symbol:RfC4 "Replication factor C subuni... 494 3.3e-47 1
POMBASE|SPAC1687.03c - symbol:rfc4 "DNA replication facto... 493 4.2e-47 1
POMBASE|SPAC23D3.02 - symbol:rfc2 "DNA replication factor... 490 8.8e-47 1
GENEDB_PFALCIPARUM|PFL2005w - symbol:PFL2005w "replicatio... 486 2.3e-46 1
UNIPROTKB|Q8I512 - symbol:PFL2005w "Replication factor C ... 486 2.3e-46 1
CGD|CAL0000922 - symbol:RFC4 species:5476 "Candida albica... 482 6.2e-46 1
SGD|S000003829 - symbol:RFC2 "Subunit of heteropentameric... 478 1.6e-45 1
WB|WBGene00004340 - symbol:rfc-4 species:6239 "Caenorhabd... 473 5.6e-45 1
UNIPROTKB|P53016 - symbol:rfc-4 "Replication factor C sub... 473 5.6e-45 1
CGD|CAL0002015 - symbol:RFC2 species:5476 "Candida albica... 471 9.1e-45 1
GENEDB_PFALCIPARUM|PFB0840w - symbol:PFB0840w "replicatio... 458 2.2e-43 1
UNIPROTKB|O96260 - symbol:PFB0840w "Replication factor C,... 458 2.2e-43 1
UNIPROTKB|I3LHX6 - symbol:RFC2 "Uncharacterized protein" ... 440 1.7e-41 1
UNIPROTKB|C9J8M3 - symbol:RFC4 "Replication factor C subu... 430 2.0e-40 1
RGD|1593197 - symbol:LOC367042 "similar to Activator 1 37... 417 4.8e-39 1
POMBASE|SPBC83.14c - symbol:rfc5 "DNA replication factor ... 219 2.8e-30 2
UNIPROTKB|C9JTT7 - symbol:RFC4 "Replication factor C subu... 312 6.4e-28 1
RGD|1306832 - symbol:Rfc3 "replication factor C (activato... 208 3.2e-27 2
UNIPROTKB|F1P3C0 - symbol:RFC3 "Uncharacterized protein" ... 207 7.3e-27 2
MGI|MGI:1916513 - symbol:Rfc3 "replication factor C (acti... 206 8.0e-27 2
UNIPROTKB|E2R7L0 - symbol:RFC3 "Uncharacterized protein" ... 207 2.4e-26 2
UNIPROTKB|P40938 - symbol:RFC3 "Replication factor C subu... 207 2.4e-26 2
UNIPROTKB|F1RSR4 - symbol:RFC3 "Uncharacterized protein" ... 205 3.2e-26 2
ZFIN|ZDB-GENE-020809-3 - symbol:rfc3 "replication factor ... 197 3.4e-26 2
WB|WBGene00004339 - symbol:rfc-3 species:6239 "Caenorhabd... 223 4.1e-26 2
UNIPROTKB|Q18547 - symbol:rfc-3 "Protein RFC-3" species:6... 223 4.1e-26 2
FB|FBgn0028700 - symbol:RfC38 "Replication factor C 38kD ... 196 4.3e-25 2
SGD|S000000291 - symbol:RFC5 "Subunit of heteropentameric... 190 6.1e-24 2
DICTYBASE|DDB_G0293702 - symbol:rfc3 "replication factor ... 181 5.5e-23 2
CGD|CAL0004366 - symbol:RFC5 species:5476 "Candida albica... 184 5.9e-23 2
UNIPROTKB|G4NAB7 - symbol:MGG_03202 "Replication factor C... 182 6.4e-22 2
ASPGD|ASPL0000001589 - symbol:AN6300 species:162425 "Emer... 185 1.7e-21 2
UNIPROTKB|H7C5P4 - symbol:RFC2 "Replication factor C subu... 249 3.0e-21 1
UNIPROTKB|C9JXZ7 - symbol:RFC4 "Replication factor C subu... 247 4.9e-21 1
TIGR_CMR|BA_0019 - symbol:BA_0019 "DNA polymerase III, ga... 223 8.0e-17 1
TIGR_CMR|DET_0585 - symbol:DET_0585 "DNA polymerase III, ... 217 8.3e-16 1
UNIPROTKB|Q97RF7 - symbol:dnaX "DNA polymerase III, gamma... 211 5.6e-15 1
UNIPROTKB|Q2TBV1 - symbol:RFC3 "Replication factor C subu... 206 7.2e-15 1
UNIPROTKB|P09122 - symbol:dnaX "DNA polymerase III subuni... 205 3.7e-14 1
UNIPROTKB|Q2GDS0 - symbol:NSE_0492 "Putative DNA polymera... 197 1.5e-13 1
TIGR_CMR|NSE_0492 - symbol:NSE_0492 "putative DNA polymer... 197 1.5e-13 1
TIGR_CMR|SPO_3550 - symbol:SPO_3550 "DNA polymerase III, ... 162 2.8e-13 2
TIGR_CMR|CHY_2675 - symbol:CHY_2675 "putative DNA polymer... 195 5.2e-13 1
UNIPROTKB|E7DN81 - symbol:E7DN81 "DnaX DNA polymerase III... 190 6.9e-13 1
TIGR_CMR|GSU_0094 - symbol:GSU_0094 "DNA polymerase III, ... 193 1.2e-12 1
TAIR|locus:2180315 - symbol:EMB2775 "EMBRYO DEFECTIVE 277... 185 3.3e-12 1
UNIPROTKB|Q0C591 - symbol:dnaX "DNA polymerase III, subun... 151 7.1e-12 2
TAIR|locus:2172013 - symbol:AT5G45720 species:3702 "Arabi... 189 7.6e-12 1
TAIR|locus:2032432 - symbol:AT1G24290 species:3702 "Arabi... 185 8.7e-12 1
UNIPROTKB|P63975 - symbol:dnaX "DNA polymerase III subuni... 131 8.6e-11 2
TIGR_CMR|CJE_1293 - symbol:CJE_1293 "DNA polymerase III, ... 174 1.6e-10 1
TAIR|locus:2065299 - symbol:STI "STICHEL" species:3702 "A... 143 1.6e-10 2
ASPGD|ASPL0000029025 - symbol:AN5617 species:162425 "Emer... 172 2.9e-10 1
TIGR_CMR|CHY_2201 - symbol:CHY_2201 "ATPase, AAA family" ... 166 1.0e-09 1
DICTYBASE|DDB_G0272158 - symbol:wrnip1 "putative Werner h... 156 1.8e-09 2
TIGR_CMR|ECH_0014 - symbol:ECH_0014 "DNA polymerase III, ... 164 2.2e-09 1
WARNING: Descriptions of 81 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2204710 [details] [associations]
symbol:RFC3 "replication factor C subunit 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0031348 "negative regulation of defense
response" evidence=IMP] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006312 "mitotic recombination"
evidence=RCA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=RCA] [GO:0009560 "embryo sac egg cell
differentiation" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0016246 "RNA interference"
evidence=RCA] [GO:0016570 "histone modification" evidence=RCA]
[GO:0031048 "chromatin silencing by small RNA" evidence=RCA]
[GO:0048449 "floral organ formation" evidence=RCA] [GO:0051567
"histone H3-K9 methylation" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005524 GO:GO:0031348 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 EMBL:AC010704 eggNOG:COG0470 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OMA:ILACARQ HSSP:Q8U4J3
EMBL:AY065452 EMBL:AY117282 IPI:IPI00521569 PIR:A96804
RefSeq:NP_177871.1 UniGene:At.28476 UniGene:At.70634
ProteinModelPortal:Q9CAQ8 SMR:Q9CAQ8 STRING:Q9CAQ8 PaxDb:Q9CAQ8
PRIDE:Q9CAQ8 EnsemblPlants:AT1G77470.1 GeneID:844083
KEGG:ath:AT1G77470 TAIR:At1g77470 InParanoid:Q9CAQ8
PhylomeDB:Q9CAQ8 ProtClustDB:CLSN2682996 ArrayExpress:Q9CAQ8
Genevestigator:Q9CAQ8 Uniprot:Q9CAQ8
Length = 369
Score = 1212 (431.7 bits), Expect = 2.7e-123, P = 2.7e-123
Identities = 245/313 (78%), Positives = 272/313 (86%)
Query: 5 ETVSLMDFDEDENQNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDT 64
E S MD D DE Q KP + GK+V+ G PP KA+PWVEKYRPQSL DVAAHRDI+DT
Sbjct: 3 ELTSAMDIDVDEIQPRKPINKGKDVVGFGPPPQSKATPWVEKYRPQSLDDVAAHRDIIDT 62
Query: 65 IDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQ 124
IDRLT+EN+LPHLLLYGPPGTGKTSTILAVARKLYG +Y NMILELNASDDRGIDVVRQQ
Sbjct: 63 IDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGPKYRNMILELNASDDRGIDVVRQQ 122
Query: 125 IQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKI 184
IQDFASTQSFS G K+SVKLVLLDEADAMTKDAQFALRRVIEKYTK+TRFALI N VNKI
Sbjct: 123 IQDFASTQSFSLG-KSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALIGNHVNKI 181
Query: 185 IPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQ 244
IPALQSRCTRFRFAPL+ VH+++RLKHVIEAE L V++ GLAALVRL NGDMRKALNILQ
Sbjct: 182 IPALQSRCTRFRFAPLDGVHMSQRLKHVIEAERLVVSDCGLAALVRLSNGDMRKALNILQ 241
Query: 245 STHMASQ--------QITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRK 296
STHMAS+ QITEE VYLCTGNPLPKDIEQIS+WLLN+ F + +K +SE+K RK
Sbjct: 242 STHMASKEITEEESKQITEEDVYLCTGNPLPKDIEQISHWLLNKPFDECYKDVSEIKTRK 301
Query: 297 GLALVDIVREVTM 309
GLA+VDIV+E+T+
Sbjct: 302 GLAIVDIVKEITL 314
>MGI|MGI:1919401 [details] [associations]
symbol:Rfc5 "replication factor C (activator 1) 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:1919401
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 GO:GO:0005663
HOVERGEN:HBG002053 Pfam:PF08542 HOGENOM:HOG000224152
GeneTree:ENSGT00550000075072 OMA:ILACARQ CTD:5985 EMBL:AK011489
IPI:IPI00132481 RefSeq:NP_082404.1 UniGene:Mm.27997
ProteinModelPortal:Q9D0F6 SMR:Q9D0F6 STRING:Q9D0F6
PhosphoSite:Q9D0F6 PaxDb:Q9D0F6 PRIDE:Q9D0F6
Ensembl:ENSMUST00000086461 GeneID:72151 KEGG:mmu:72151
InParanoid:Q9D0F6 OrthoDB:EOG4RBQJX NextBio:335574 Bgee:Q9D0F6
CleanEx:MM_RFC5 Genevestigator:Q9D0F6 GermOnline:ENSMUSG00000029363
Uniprot:Q9D0F6
Length = 339
Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
Identities = 169/267 (63%), Positives = 211/267 (79%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY-G 100
PWVEKYRPQ+LAD+ +H+DI+ TI + SE+RLPHLLLYGPPGTGKTSTILA A++LY
Sbjct: 20 PWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 79
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
++ +M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+DAQ A
Sbjct: 80 KEFGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQDAQNA 136
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV++ E +D+
Sbjct: 137 LRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDI 196
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+E G+ ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W+LN+
Sbjct: 197 SEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKTDIANILDWMLNQ 256
Query: 281 SFADSFKRISEMKMRKGLALVDIVREV 307
F ++K I E+K KGLAL DI+ EV
Sbjct: 257 DFTTAYKNIMELKTLKGLALHDILTEV 283
>RGD|1309280 [details] [associations]
symbol:Rfc5 "replication factor C (activator 1) 5" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005663 "DNA replication factor C complex" evidence=IEA;ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1309280
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GO:GO:0005663 Pfam:PF08542
GeneTree:ENSGT00550000075072 OMA:ILACARQ IPI:IPI00870052
Ensembl:ENSRNOT00000001498 UCSC:RGD:1309280 ArrayExpress:F1LQL0
Uniprot:F1LQL0
Length = 339
Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
Identities = 169/267 (63%), Positives = 211/267 (79%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY-G 100
PWVEKYRPQ+LAD+ +H+DI+ TI + SE+RLPHLLLYGPPGTGKTSTILA A++LY
Sbjct: 20 PWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 79
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
++ +M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+DAQ A
Sbjct: 80 KEFGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKRGFKLVILDEADAMTQDAQNA 136
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV++ E +D+
Sbjct: 137 LRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDI 196
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+E G+ ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W+LN+
Sbjct: 197 SEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKTDIANILDWMLNQ 256
Query: 281 SFADSFKRISEMKMRKGLALVDIVREV 307
F ++K I E+K KGLAL DI+ EV
Sbjct: 257 DFTTAYKNIMELKTLKGLALHDILTEV 283
>UNIPROTKB|Q32PI3 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542
HOGENOM:HOG000224152 GeneTree:ENSGT00550000075072 OMA:ILACARQ
CTD:5985 OrthoDB:EOG4RBQJX EMBL:DAAA02045332 EMBL:BC108105
IPI:IPI00688331 RefSeq:NP_001068826.1 UniGene:Bt.21988 SMR:Q32PI3
STRING:Q32PI3 Ensembl:ENSBTAT00000009392 GeneID:508389
KEGG:bta:508389 NextBio:20868499 Uniprot:Q32PI3
Length = 316
Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
Identities = 167/271 (61%), Positives = 212/271 (78%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I+ PWVEKYRPQ+L D+ +H+DI+ TI + SE+RLPHLLLYGPPGTGKTSTILA A++
Sbjct: 16 IRNLPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQ 75
Query: 98 LY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
LY ++ +M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+D
Sbjct: 76 LYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQD 132
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV+E E
Sbjct: 133 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 192
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
+D++E G+ AL+ L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W
Sbjct: 193 KVDISEDGMKALITLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDW 252
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREV 307
+LN+ F +++ I E+K KGLAL DI+ E+
Sbjct: 253 MLNQDFTTAYRNIMELKTLKGLALHDILTEI 283
>UNIPROTKB|F1RKG3 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000075072 OMA:ILACARQ
EMBL:CU468330 Ensembl:ENSSSCT00000010801 Uniprot:F1RKG3
Length = 354
Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
Identities = 167/271 (61%), Positives = 212/271 (78%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I+ PWVEKYRPQ+L D+ +H+DI+ TI + SE+RLPHLLLYGPPGTGKTSTILA A++
Sbjct: 31 IRNLPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQ 90
Query: 98 LY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
LY ++ +M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+D
Sbjct: 91 LYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQD 147
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV+E E
Sbjct: 148 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 207
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
+D++E G+ AL+ L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W
Sbjct: 208 KVDISEDGMKALITLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDW 267
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREV 307
+LN+ F +++ I E+K KGLAL DI+ E+
Sbjct: 268 MLNQDFTTAYRNIMELKTLKGLALNDILTEI 298
>ZFIN|ZDB-GENE-040907-1 [details] [associations]
symbol:rfc5 "replication factor C (activator 1) 5"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0060041 "retina development in camera-type eye" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
ZFIN:ZDB-GENE-040907-1 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0060041 KO:K10756 GO:GO:0017111 SUPFAM:SSF48019
HOVERGEN:HBG002053 Pfam:PF08542 GeneTree:ENSGT00550000075072
OMA:ILACARQ CTD:5985 EMBL:CU207223 EMBL:AY648755 IPI:IPI00505315
RefSeq:NP_001003862.1 UniGene:Dr.151058 SMR:Q6DRK4 STRING:Q6DRK4
Ensembl:ENSDART00000051670 GeneID:445385 KEGG:dre:445385
InParanoid:Q6DRK4 NextBio:20832089 Uniprot:Q6DRK4
Length = 334
Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
Identities = 170/277 (61%), Positives = 210/277 (75%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
S T P + PWVEKYRPQ+L D+ +H+DI+ TI + SE+RLPHLL YGPPGTGKTSTI
Sbjct: 5 SKTQPQARNLPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTI 64
Query: 92 LAVARKLY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEA 150
LA AR+LY ++++M+LELNASDDRGIDVVR I FAST++ K KLV+LDEA
Sbjct: 65 LACARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTI---FKKGFKLVILDEA 121
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
DAMT+DAQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL + RL+
Sbjct: 122 DAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQMIPRLE 181
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDI 270
HVI+ E +D+T G+ A+V L GDMR++LNILQSTHMA ++TEE VY CTG+PL DI
Sbjct: 182 HVIQQESIDITPDGMKAIVTLSTGDMRRSLNILQSTHMAYGKVTEETVYTCTGHPLRSDI 241
Query: 271 EQISYWLLNESFADSFKRISEMKMRKGLALVDIVREV 307
I W LN+ F ++ +I E+K KGLAL DI+ EV
Sbjct: 242 ANILDWALNKDFTTAYNQILELKTLKGLALHDILTEV 278
>UNIPROTKB|P40937 [details] [associations]
symbol:RFC5 "Replication factor C subunit 5" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0019899 "enzyme binding" evidence=NAS]
[GO:0006260 "DNA replication" evidence=NAS;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006281 "DNA repair"
evidence=NAS;TAS] [GO:0005663 "DNA replication factor C complex"
evidence=IDA] [GO:0000722 "telomere maintenance via recombination"
evidence=TAS] [GO:0000723 "telomere maintenance" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand
elongation involved in DNA replication" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
Reactome:REACT_216 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 Reactome:REACT_115566 GO:GO:0005654 GO:GO:0003677
GO:GO:0019899 KO:K10756 GO:GO:0017111 GO:GO:0000084 eggNOG:COG0470
GO:GO:0000075 GO:GO:0000722 Reactome:REACT_383 GO:GO:0006283
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 HOGENOM:HOG000224152
OMA:ILACARQ EMBL:L07540 EMBL:AY254323 EMBL:AK094575 EMBL:AC131159
EMBL:BC001866 EMBL:BC013961 IPI:IPI00031514 IPI:IPI00925306
RefSeq:NP_001123584.1 RefSeq:NP_031396.1 RefSeq:NP_853556.2
UniGene:Hs.731908 PDB:1LFS PDBsum:1LFS ProteinModelPortal:P40937
SMR:P40937 DIP:DIP-36433N IntAct:P40937 MINT:MINT-1372754
STRING:P40937 PhosphoSite:P40937 DMDM:728777 PaxDb:P40937
PRIDE:P40937 DNASU:5985 Ensembl:ENST00000392542
Ensembl:ENST00000454402 GeneID:5985 KEGG:hsa:5985 UCSC:uc001twq.3
CTD:5985 GeneCards:GC12P118454 HGNC:HGNC:9973 HPA:HPA041037
MIM:600407 neXtProt:NX_P40937 PharmGKB:PA34342 InParanoid:P40937
PhylomeDB:P40937 GenomeRNAi:5985 NextBio:23303 ArrayExpress:P40937
Bgee:P40937 CleanEx:HS_RFC5 Genevestigator:P40937
GermOnline:ENSG00000111445 Uniprot:P40937
Length = 340
Score = 853 (305.3 bits), Expect = 3.0e-85, P = 3.0e-85
Identities = 166/271 (61%), Positives = 213/271 (78%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I+ PWVEKYRPQ+L D+ +H+DI+ TI + +E+RLPHLLLYGPPGTGKTSTILA A++
Sbjct: 17 IRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQ 76
Query: 98 LY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
LY ++ +M+LELNASDDRGID++R I FAST++ K KLV+LDEADAMT+D
Sbjct: 77 LYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTI---FKKGFKLVILDEADAMTQD 133
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV+E E
Sbjct: 134 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 193
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
+D++E G+ ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W
Sbjct: 194 KVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDW 253
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREV 307
+LN+ F +++ I+E+K KGLAL DI+ E+
Sbjct: 254 MLNQDFTTAYRNITELKTLKGLALHDILTEI 284
>UNIPROTKB|E2RCF4 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075072
OMA:ILACARQ CTD:5985 EMBL:AAEX03014719 RefSeq:XP_534696.3
ProteinModelPortal:E2RCF4 Ensembl:ENSCAFT00000015721 GeneID:477499
KEGG:cfa:477499 NextBio:20852966 Uniprot:E2RCF4
Length = 339
Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
Identities = 167/271 (61%), Positives = 211/271 (77%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I+ PWVEKYRPQ+L D+ +H+DI+ TI + SE+RLPHLLLYGPPGTGKTSTILA A++
Sbjct: 16 IRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQ 75
Query: 98 LY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
LY ++ +M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+D
Sbjct: 76 LYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQD 132
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV+ E
Sbjct: 133 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVGEE 192
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
+D++E G+ ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W
Sbjct: 193 KVDLSEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDW 252
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREV 307
+LN+ F +++ I E+K KGLAL DI+ E+
Sbjct: 253 MLNQDFTTAYRNIMELKTLKGLALHDILTEI 283
>UNIPROTKB|J9NUF8 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075072
EMBL:AAEX03014719 Ensembl:ENSCAFT00000046634 Uniprot:J9NUF8
Length = 316
Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
Identities = 167/271 (61%), Positives = 211/271 (77%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I+ PWVEKYRPQ+L D+ +H+DI+ TI + SE+RLPHLLLYGPPGTGKTSTILA A++
Sbjct: 16 IRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQ 75
Query: 98 LY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
LY ++ +M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+D
Sbjct: 76 LYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQD 132
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV+ E
Sbjct: 133 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVGEE 192
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
+D++E G+ ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W
Sbjct: 193 KVDLSEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDW 252
Query: 277 LLNESFADSFKRISEMKMRKGLALVDIVREV 307
+LN+ F +++ I E+K KGLAL DI+ E+
Sbjct: 253 MLNQDFTTAYRNIMELKTLKGLALHDILTEI 283
>DICTYBASE|DDB_G0282235 [details] [associations]
symbol:rfc5 "replication factor C subunit 5"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=ISS] [GO:0031391 "Elg1 RFC-like complex" evidence=ISS]
[GO:0031389 "Rad17 RFC-like complex" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] [GO:0006272 "leading strand elongation" evidence=ISS]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
dictyBase:DDB_G0282235 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0003677 GO:GO:0016887 GO:GO:0006298
KO:K10756 EMBL:AAFI02000046 eggNOG:COG0470 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 RefSeq:XP_640301.1 HSSP:P38629
ProteinModelPortal:Q54ST4 STRING:Q54ST4 EnsemblProtists:DDB0232229
GeneID:8623477 KEGG:ddi:DDB_G0282235 OMA:ILACARQ Uniprot:Q54ST4
Length = 347
Score = 814 (291.6 bits), Expect = 4.1e-81, P = 4.1e-81
Identities = 164/266 (61%), Positives = 197/266 (74%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L D+ AH DI TI +L N LPHLL YGPPGTGKTSTI A+ARKLYG
Sbjct: 25 PWVEKYRPKNLDDLIAHEDITQTITKLIDNNTLPHLLFYGPPGTGKTSTIQAIARKLYGD 84
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y M+LELNASDDRGIDVVR+QI+ FAS+ F F KL++LDEAD+MT AQ AL
Sbjct: 85 NYSRMVLELNASDDRGIDVVREQIKTFASSMFF-FNTTVPYKLIILDEADSMTNIAQTAL 143
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTE-RLKHVIEAEGLDV 220
RRVIEKYTK TRF ++CN V KIIPALQSRCTRFRF+PL P TE RLK +IE E + V
Sbjct: 144 RRVIEKYTKTTRFCIVCNYVIKIIPALQSRCTRFRFSPL-PTPPTEIRLKEIIEKENVKV 202
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMAS--QQITEEAVYLCTGNPLPKDIEQISYWLL 278
+ A++ L GDMRK LNILQS M+S ITEEA+Y CTG P+P DIE + WLL
Sbjct: 203 DSKAMNAVLELGCGDMRKCLNILQSVSMSSIDNNITEEAIYKCTGYPMPSDIELMVDWLL 262
Query: 279 NESFADSFKRISEMKMRKGLALVDIV 304
N + ++F+ IS++K +KGL+L DI+
Sbjct: 263 NSDYEEAFQNISDLKKKKGLSLNDII 288
>POMBASE|SPAC27E2.10c [details] [associations]
symbol:rfc3 "DNA replication factor C complex subunit
Rfc3" species:4896 "Schizosaccharomyces pombe" [GO:0000077 "DNA
damage checkpoint" evidence=IMP] [GO:0000790 "nuclear chromatin"
evidence=IC] [GO:0005524 "ATP binding" evidence=ISM] [GO:0005634
"nucleus" evidence=IC;IDA] [GO:0005663 "DNA replication factor C
complex" evidence=TAS] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IC]
[GO:0031389 "Rad17 RFC-like complex" evidence=TAS] [GO:0031390
"Ctf18 RFC-like complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like
complex" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0065007 "biological regulation" evidence=NAS]
[GO:0003689 "DNA clamp loader activity" evidence=TAS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 PomBase:SPAC27E2.10c
GO:GO:0005829 GO:GO:0005524 GO:GO:0000077 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006261 GO:GO:0000790
GO:GO:0043596 KO:K10756 GO:GO:0017111 eggNOG:COG0470 GO:GO:0031390
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 EMBL:AB017039 EMBL:AB017040 EMBL:AJ012839 PIR:T43410
RefSeq:XP_001713099.1 ProteinModelPortal:O14003 SMR:O14003
STRING:O14003 EnsemblFungi:SPAC27E2.10c.1 GeneID:2541493
KEGG:spo:SPAC27E2.10c HOGENOM:HOG000224152 OMA:VIAFHER
OrthoDB:EOG4K0TX8 NextBio:20802592 Uniprot:O14003
Length = 342
Score = 784 (281.0 bits), Expect = 6.2e-78, P = 6.2e-78
Identities = 149/263 (56%), Positives = 193/263 (73%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L DV +H+DI+ T+++ S NR+PH+L YGPPGTGKTSTILA ARK+YG
Sbjct: 24 PWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIYGP 83
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y N ++ELNASDDRGID VR+QI++FAST+ F ++ K+++LDEADAMT AQ AL
Sbjct: 84 NYRNQLMELNASDDRGIDAVREQIKNFASTRQI-FA--STFKMIILDEADAMTLAAQNAL 140
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RRVIEKYTKN RF +ICN +NKI PA+QSRCTRFRF PL P + + + HVI++E ++
Sbjct: 141 RRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSEHCNID 200
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
A++RL GDMRKALNILQ+ H A I A+Y C G+P P DI+ ++N+
Sbjct: 201 PDAKMAVLRLSKGDMRKALNILQACHAAYDHIDVSAIYNCVGHPHPSDIDYFLKSIMNDE 260
Query: 282 FADSFKRISEMKMRKGLALVDIV 304
F +F IS +K +KGLAL DI+
Sbjct: 261 FVIAFNTISSIKQQKGLALQDIL 283
>FB|FBgn0032244 [details] [associations]
symbol:RfC3 "Replication factor C subunit 3" species:7227
"Drosophila melanogaster" [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0046331
"lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 EMBL:AE014134
GO:GO:0022008 GO:GO:0003677 GO:GO:0006260 GO:GO:0046331 KO:K10756
GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 CTD:5983
GeneTree:ENSGT00550000075072 OMA:ILACARQ HSSP:Q8U4J3 EMBL:AF247499
EMBL:AY119188 RefSeq:NP_609399.1 UniGene:Dm.3298 SMR:Q9VKW3
IntAct:Q9VKW3 MINT:MINT-284572 STRING:Q9VKW3
EnsemblMetazoa:FBtr0080019 GeneID:34423 KEGG:dme:Dmel_CG5313
UCSC:CG5313-RA FlyBase:FBgn0032244 InParanoid:Q9VKW3
OrthoDB:EOG451C6M GenomeRNAi:34423 NextBio:788424 Uniprot:Q9VKW3
Length = 332
Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
Identities = 158/268 (58%), Positives = 194/268 (72%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L D+ +H +I+ TI R S +LPHLL YGPPGTGKTSTILA AR+LY
Sbjct: 12 PWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSP 71
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Q + +M+LELNASDDRGI +VR QI +FAST++ + KL++LDEADAMT DAQ A
Sbjct: 72 QQFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCD---TFKLIILDEADAMTNDAQNA 128
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IEKYT N RF +ICN ++KIIPALQSRCTRFRFAPL + RL+ +IEAE + +
Sbjct: 129 LRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQI 188
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLN- 279
TE G AL+ L GDMRK LN+LQST MA + E+ VY+C G PL +DIEQI LL+
Sbjct: 189 TEDGKRALLTLAKGDMRKVLNVLQSTVMAFDTVNEDNVYMCVGYPLRQDIEQILKALLSG 248
Query: 280 ESFADSFKRISEMKMRKGLALVDIVREV 307
S DSFK + K +GLAL DI+ E+
Sbjct: 249 SSLEDSFKTVESAKYARGLALEDIITEL 276
>ASPGD|ASPL0000017750 [details] [associations]
symbol:AN8064 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003689 "DNA clamp
loader activity" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IEA] [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031390
"Ctf18 RFC-like complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IEA]
[GO:0031389 "Rad17 RFC-like complex" evidence=IEA] [GO:0006272
"leading strand elongation" evidence=IEA] [GO:0007062 "sister
chromatid cohesion" evidence=IEA] [GO:0000077 "DNA damage
checkpoint" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:BN001302 KO:K10756
GO:GO:0017111 eggNOG:COG0470 EMBL:AACD01000139 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OrthoDB:EOG4K0TX8 OMA:ILACARQ
RefSeq:XP_681333.1 ProteinModelPortal:Q5AUG6 STRING:Q5AUG6
EnsemblFungi:CADANIAT00004090 GeneID:2869010 KEGG:ani:AN8064.2
Uniprot:Q5AUG6
Length = 398
Score = 626 (225.4 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
Identities = 127/221 (57%), Positives = 162/221 (73%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L DV+ H+DI+ TI+R N+LPHLLLYGPPGTGKTSTILA+AR++YG+
Sbjct: 46 PWVEKYRPNTLDDVSGHKDILATINRFVEANQLPHLLLYGPPGTGKTSTILALARRIYGS 105
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKA-------SVKLVLLDEADA 152
+ M+LELNASDDRGIDVVR+QI+ FAST Q FS A S KL++LDEADA
Sbjct: 106 KNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPSATGKSSLASFKLIILDEADA 165
Query: 153 MTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212
MT AQ ALRR++EKYT NTRF +I N +K+ PAL SRCTRFRF+PL+ + + V
Sbjct: 166 MTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRVLIDQV 225
Query: 213 IEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQI 253
IE E + + + +LV L GDMR+ALN+LQ+ H +S+ +
Sbjct: 226 IEKEDVRIQPEAVDSLVTLSRGDMRRALNVLQACHASSKPL 266
Score = 95 (38.5 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
Identities = 23/55 (41%), Positives = 31/55 (56%)
Query: 251 QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADS-FKRISEMKMRKGLALVDIV 304
+ IT E +Y C P P DI+QI LL S S ++ +K+ KGLAL DI+
Sbjct: 281 ETITNETIYDCIAAPHPADIQQIVTTLLATSDVTSCLNTLNTLKINKGLALADIL 335
>SGD|S000005234 [details] [associations]
symbol:RFC3 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003689 "DNA
clamp loader activity" evidence=IDA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0031390 "Ctf18 RFC-like complex"
evidence=IPI] [GO:0031391 "Elg1 RFC-like complex" evidence=IPI]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005663 "DNA
replication factor C complex" evidence=IDA] [GO:0006272 "leading
strand elongation" evidence=IDA] [GO:0006298 "mismatch repair"
evidence=TAS] [GO:0007062 "sister chromatid cohesion" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 SGD:S000005234
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:BK006947
GO:GO:0016887 GO:GO:0006298 KO:K10756 eggNOG:COG0470 EMBL:U23084
GO:GO:0031390 GO:GO:0007062 GO:GO:0006272 SUPFAM:SSF48019
GO:GO:0005663 GO:GO:0031391 EMBL:Z71566 PDB:1SXJ PDBsum:1SXJ
GO:GO:0031389 Pfam:PF08542 HOGENOM:HOG000224152 OrthoDB:EOG4K0TX8
EMBL:L18755 EMBL:U26029 PIR:A36988 RefSeq:NP_014109.1
ProteinModelPortal:P38629 SMR:P38629 DIP:DIP-2529N IntAct:P38629
MINT:MINT-540713 STRING:P38629 PaxDb:P38629 PeptideAtlas:P38629
EnsemblFungi:YNL290W GeneID:855426 KEGG:sce:YNL290W CYGD:YNL290w
GeneTree:ENSGT00550000075072 OMA:YAHKLTP EvolutionaryTrace:P38629
NextBio:979295 Genevestigator:P38629 GermOnline:YNL290W
Uniprot:P38629
Length = 340
Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
Identities = 135/272 (49%), Positives = 187/272 (68%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L +V +++ T+ + E +LPHLL YGPPGTGKTSTI+A+AR++YG
Sbjct: 14 PWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y NM+LELNASDDRGIDVVR QI+DFAST Q FS G K L++LDEADAMT AQ A
Sbjct: 74 NYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFK----LIILDEADAMTNAAQNA 129
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIE+YTKNTRF ++ N +K+ PAL SRCTRFRF PL + R+ +V+ E L +
Sbjct: 130 LRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKL 189
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMA-----SQQITEEAVYLCTGNPLPKDIEQISY 275
+ AL+ L NGDMR+ LN+LQS +I+++ +Y C G P P D++ +
Sbjct: 190 SPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLKAVLK 249
Query: 276 WLLNESFADSFKRISEMKMRKGLALVDIVREV 307
+L + + + +++++ KGLAL+D++ +
Sbjct: 250 SILEDDWGTAHYTLNKVRSAKGLALIDLIEGI 281
>WB|WBGene00018409 [details] [associations]
symbol:F44B9.8 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0009360 "DNA polymerase III complex" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 eggNOG:COG0470 EMBL:FO080400 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OMA:VIAFHER
GeneTree:ENSGT00550000075072 PIR:S44809 RefSeq:NP_498750.2
ProteinModelPortal:P34429 SMR:P34429 DIP:DIP-27001N IntAct:P34429
MINT:MINT-1095598 STRING:P34429 PaxDb:P34429 EnsemblMetazoa:F44B9.8
GeneID:176131 KEGG:cel:CELE_F44B9.8 UCSC:F44B9.8 CTD:176131
WormBase:F44B9.8 InParanoid:P34429 NextBio:891256 Uniprot:P34429
Length = 368
Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
Identities = 137/270 (50%), Positives = 177/270 (65%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRP L ++ AH IV T+ + LPHLL YGPPGTGKT+T+LA AR++Y
Sbjct: 30 PWVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARQMYSP 89
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFAST---QSFSFGVKASV---KLVLLDEADAMT 154
+ +M+LELNASD+RGIDVVR I +FA T Q+FS KLV+LDEADAMT
Sbjct: 90 TKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTVPFKLVILDEADAMT 149
Query: 155 KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE 214
KDAQ ALRRVIEKYT N RF +ICN + I+PA+QSRCTRFRFAPL+ + RL++++E
Sbjct: 150 KDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQKLIVPRLEYIVE 209
Query: 215 AEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQIS 274
E L +T G AL+ + GDMR +N LQST M+ ++E VY C G P PK+++++
Sbjct: 210 TEQLKMTPDGKDALLIVSKGDMRTVINTLQSTAMSFDTVSENTVYQCIGQPTPKEMKEVV 269
Query: 275 YWLLNESFADSFKRISEMKMRKGLALVDIV 304
LLN+ I G AL D++
Sbjct: 270 KTLLNDPSKKCMNTIQTKLFENGYALQDVI 299
>GENEDB_PFALCIPARUM|PF14_0601 [details] [associations]
symbol:PF14_0601 "replication factor C3"
species:5833 "Plasmodium falciparum" [GO:0005663 "DNA replication
factor C complex" evidence=ISS] [GO:0043626 "PCNA complex"
evidence=ISS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 EMBL:AE014187 KO:K10756 GO:GO:0017111
GO:GO:0006271 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0043626
Pfam:PF08542 HOGENOM:HOG000224152 HSSP:Q8U4J3 RefSeq:XP_001348775.1
ProteinModelPortal:Q8IKK4 EnsemblProtists:PF14_0601:mRNA
GeneID:812183 KEGG:pfa:PF14_0601 EuPathDB:PlasmoDB:PF3D7_1463200
OMA:ERIFITR ProtClustDB:CLSZ2432150 Uniprot:Q8IKK4
Length = 344
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 125/267 (46%), Positives = 188/267 (70%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
+PWVEKYRP L D+ +H ++ TI R + LPHLLL+GPPGTGKTSTILAV ++LYG
Sbjct: 13 TPWVEKYRPNVLNDIISHEQVISTIKRFVQKGELPHLLLHGPPGTGKTSTILAVCKELYG 72
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQS-FSFGVKASVKLVLLDEADAMTKDAQF 159
+ + +LELNASDDRGI+V+R QI+ FA +++ ++ K ++KL++LDEAD MT AQ
Sbjct: 73 DKRSSFVLELNASDDRGINVIRDQIKTFAESKNHYTTCEKTTLKLIILDEADHMTYPAQN 132
Query: 160 ALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLD 219
A+RR++E Y KN RF L+CN VNKI PA+QSRCT FRFAPL+ ++ + + ++E ++
Sbjct: 133 AMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLKKEYMKNKALDIAKSENVN 192
Query: 220 VTEGGLAALVRLCNGDMRKALNILQSTHMASQQIT-EEAVYLCTGN-PLPKDIEQISYWL 277
+TEGG+ +L+R+ +GDMR+ LN LQ ++ + + +E V L T + PLP + ++I +
Sbjct: 193 LTEGGIDSLIRVGHGDMRRILNCLQVVSLSHKNLVIDENVILSTLDIPLPSETKKILEYF 252
Query: 278 LNESFADSFKRISEMKMRKGLALVDIV 304
S +S++ +S ++ KG + DI+
Sbjct: 253 TKGSIKESYEFVSNLQYDKGYSTKDIM 279
>UNIPROTKB|Q8IKK4 [details] [associations]
symbol:PF14_0601 "Replication factor C3" species:36329
"Plasmodium falciparum 3D7" [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006271 "DNA strand elongation involved
in DNA replication" evidence=ISS] [GO:0043626 "PCNA complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 EMBL:AE014187 KO:K10756 GO:GO:0017111
GO:GO:0006271 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0043626
Pfam:PF08542 HOGENOM:HOG000224152 HSSP:Q8U4J3 RefSeq:XP_001348775.1
ProteinModelPortal:Q8IKK4 EnsemblProtists:PF14_0601:mRNA
GeneID:812183 KEGG:pfa:PF14_0601 EuPathDB:PlasmoDB:PF3D7_1463200
OMA:ERIFITR ProtClustDB:CLSZ2432150 Uniprot:Q8IKK4
Length = 344
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 125/267 (46%), Positives = 188/267 (70%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
+PWVEKYRP L D+ +H ++ TI R + LPHLLL+GPPGTGKTSTILAV ++LYG
Sbjct: 13 TPWVEKYRPNVLNDIISHEQVISTIKRFVQKGELPHLLLHGPPGTGKTSTILAVCKELYG 72
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQS-FSFGVKASVKLVLLDEADAMTKDAQF 159
+ + +LELNASDDRGI+V+R QI+ FA +++ ++ K ++KL++LDEAD MT AQ
Sbjct: 73 DKRSSFVLELNASDDRGINVIRDQIKTFAESKNHYTTCEKTTLKLIILDEADHMTYPAQN 132
Query: 160 ALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLD 219
A+RR++E Y KN RF L+CN VNKI PA+QSRCT FRFAPL+ ++ + + ++E ++
Sbjct: 133 AMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLKKEYMKNKALDIAKSENVN 192
Query: 220 VTEGGLAALVRLCNGDMRKALNILQSTHMASQQIT-EEAVYLCTGN-PLPKDIEQISYWL 277
+TEGG+ +L+R+ +GDMR+ LN LQ ++ + + +E V L T + PLP + ++I +
Sbjct: 193 LTEGGIDSLIRVGHGDMRRILNCLQVVSLSHKNLVIDENVILSTLDIPLPSETKKILEYF 252
Query: 278 LNESFADSFKRISEMKMRKGLALVDIV 304
S +S++ +S ++ KG + DI+
Sbjct: 253 TKGSIKESYEFVSNLQYDKGYSTKDIM 279
>CGD|CAL0003213 [details] [associations]
symbol:RCF3 species:5476 "Candida albicans" [GO:0005663 "DNA
replication factor C complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0031390 "Ctf18 RFC-like complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0031391 "Elg1 RFC-like
complex" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0000077
"DNA damage checkpoint" evidence=IEA] [GO:0003689 "DNA clamp loader
activity" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 CGD:CAL0003213 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 HOGENOM:HOG000224152 EMBL:AACQ01000224
RefSeq:XP_710951.1 ProteinModelPortal:Q59ML2 SMR:Q59ML2
STRING:Q59ML2 GeneID:3647440 KEGG:cal:CaO19.3211 Uniprot:Q59ML2
Length = 361
Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
Identities = 135/280 (48%), Positives = 188/280 (67%)
Query: 44 VEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA-Q 102
VEKYRP SL +V ++IVDT+ + +LPHLL YGP GTGKTSTI+A+A+++YGA
Sbjct: 26 VEKYRPDSLEEVKGQQEIVDTVRKFVETGKLPHLLFYGPSGTGKTSTIIALAKEIYGATN 85
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASV-----KLVLLDEADAMTKD 156
Y NMILELNASDDRGIDVVR QI++FAST Q F+ + KL++LDEADAMT
Sbjct: 86 YKNMILELNASDDRGIDVVRNQIKNFASTRQIFTKNTSQTASNNQFKLIILDEADAMTNV 145
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ +LRRVIEK+TKN RF ++ N +K+ PAL SRCTRFRF P++ + +RL VI E
Sbjct: 146 AQNSLRRVIEKFTKNCRFCILANYSHKLNPALISRCTRFRFTPIDISAIKDRLNTVIIKE 205
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMA------------SQQITEEAVYLCTGN 264
++++ + AL++L NGDMR+ALN+LQS A + +I + +Y C G
Sbjct: 206 NVNISPEAIDALLKLSNGDMRRALNVLQSCKAALGDEEKEEDGHANDEIDVDMIYDCVGA 265
Query: 265 PLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIV 304
P P+D+E +L + + ++ +++ K KGLAL+D++
Sbjct: 266 PHPQDVETCLDSILKDDWTTAYLTLNKYKTIKGLALIDLI 305
>UNIPROTKB|F8W9B4 [details] [associations]
symbol:RFC5 "Replication factor C subunit 5" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] InterPro:IPR008921
InterPro:IPR013748 GO:GO:0003677 GO:GO:0006260 KO:K10756
SUPFAM:SSF48019 Pfam:PF08542 EMBL:AC131159 RefSeq:NP_001123584.1
UniGene:Hs.731908 DNASU:5985 GeneID:5985 KEGG:hsa:5985 CTD:5985
HGNC:HGNC:9973 GenomeRNAi:5985 NextBio:23303 IPI:IPI00908568
ProteinModelPortal:F8W9B4 SMR:F8W9B4 PRIDE:F8W9B4
Ensembl:ENST00000229043 ArrayExpress:F8W9B4 Bgee:F8W9B4
Uniprot:F8W9B4
Length = 255
Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
Identities = 124/202 (61%), Positives = 157/202 (77%)
Query: 106 MILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVI 165
M+LELNASDDRGID++R I FAST++ K KLV+LDEADAMT+DAQ ALRRVI
Sbjct: 1 MVLELNASDDRGIDIIRGPILSFASTRTI---FKKGFKLVILDEADAMTQDAQNALRRVI 57
Query: 166 EKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGL 225
EK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV+E E +D++E G+
Sbjct: 58 EKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGM 117
Query: 226 AALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADS 285
ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W+LN+ F +
Sbjct: 118 KALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTA 177
Query: 286 FKRISEMKMRKGLALVDIVREV 307
++ I+E+K KGLAL DI+ E+
Sbjct: 178 YRNITELKTLKGLALHDILTEI 199
>DICTYBASE|DDB_G0286027 [details] [associations]
symbol:rfc4 "replication factor C subunit 4"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003689 "DNA
clamp loader activity" evidence=ISS] [GO:0031391 "Elg1 RFC-like
complex" evidence=ISS] [GO:0031389 "Rad17 RFC-like complex"
evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
[GO:0006272 "leading strand elongation" evidence=ISS] [GO:0005663
"DNA replication factor C complex" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0286027 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000153_GR GO:GO:0003677 GO:GO:0006298
EMBL:AAFI02000085 GO:GO:0017111 KO:K10755 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 Pfam:PF08542 RefSeq:XP_637900.1 HSSP:O28219
ProteinModelPortal:Q54MD4 STRING:Q54MD4 EnsemblProtists:DDB0232233
GeneID:8625410 KEGG:ddi:DDB_G0286027 OMA:SANDIVQ
ProtClustDB:CLSZ2430137 Uniprot:Q54MD4
Length = 347
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 116/273 (42%), Positives = 172/273 (63%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWV KYRP+++ DV+ D++ + + + LPHLL YGPPGTGKTSTILA+A +YG
Sbjct: 11 PWVAKYRPKTVDDVSYQEDVISALKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMDIYGP 70
Query: 102 QYHNM-ILELNASDDRGIDVVRQQIQDFAS-----TQSFSFGVKASVKLVLLDEADAMTK 155
+ +LELNASD+RGI+VVR +I++FA T + + A+ KL++LDEAD+MT
Sbjct: 71 ELMKQRVLELNASDERGIEVVRTKIKNFAGYAVNKTTTGTSNPGATFKLIILDEADSMTT 130
Query: 156 DAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA 215
DAQ ALRR IE +K TRF L+CN +++II L SRC +FRF PL+ V ERLK + +
Sbjct: 131 DAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERLKFISQQ 190
Query: 216 EGLDVTEGGLAALVRLCNGDMRKALNILQST-HMASQQITEEAVYLCTGNPLPKDIEQIS 274
EG+ E A+ + NGDMRKA+ LQS + +I+E+ +Y G+ P+ I+Q+
Sbjct: 191 EGIKCEESVYQAIQVVSNGDMRKAITYLQSAFRFFANKISEDVIYNIAGSLPPQLIKQLV 250
Query: 275 YWLLNESFADSFKRISEMKMRKGLALVDIVREV 307
SF D + + + + +G + ++ ++
Sbjct: 251 DCCKKNSF-DRLQSMVQSIIAQGYPVSQVISQL 282
>WB|WBGene00004338 [details] [associations]
symbol:rfc-2 species:6239 "Caenorhabditis elegans"
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0009792 GO:GO:0003677 GO:GO:0006260
GO:GO:0040011 GO:GO:0000003 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
OMA:IQCLARI Pfam:PF08542 EMBL:FO080408 PIR:D88638
RefSeq:NP_500069.1 HSSP:Q8U4J3 ProteinModelPortal:O44175 SMR:O44175
DIP:DIP-26649N IntAct:O44175 MINT:MINT-1044481 STRING:O44175
PaxDb:O44175 EnsemblMetazoa:F58F6.4 GeneID:176946
KEGG:cel:CELE_F58F6.4 UCSC:F58F6.4 CTD:176946 WormBase:F58F6.4
InParanoid:O44175 NextBio:894694 Uniprot:O44175
Length = 334
Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
Identities = 116/264 (43%), Positives = 169/264 (64%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
+PWVEKYRP+ LAD+ + +IV+ + + E +P+++L GPPG GKT+++ A+AR+L G
Sbjct: 10 APWVEKYRPKVLADIVGNENIVERLKVIGHEGNVPNIVLSGPPGCGKTTSVWALARELLG 69
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
+ +LELNASD+RGIDVVR +I+ FA T+ + K+++LDEAD+MT AQ A
Sbjct: 70 DKVKEAVLELNASDERGIDVVRHRIKTFAQTKVTL--PEGRHKIIILDEADSMTDGAQQA 127
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E YTK TRFAL CNQ KII +QSRC R+ L PV + R+K V +AE ++
Sbjct: 128 LRRTMEMYTKTTRFALACNQSEKIIEPIQSRCALLRYTKLSPVQLLTRVKEVAKAEKVNY 187
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+GGL A++ GDMR+ALN LQ+T A + + +E V P P + ++ ++ +
Sbjct: 188 DDGGLEAILFTAQGDMRQALNNLQATVNAYELVNKENVLKVCDEPHPDLMIKMLHYCTDR 247
Query: 281 SFADSFKRISEMKMRKGLALVDIV 304
F ++ K I E R G + DIV
Sbjct: 248 KFFEASKIIHEFH-RLGFSSDDIV 270
>UNIPROTKB|F1NEW1 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917 OMA:QQLSQNC
EMBL:AADN02020726 IPI:IPI00819051 PRIDE:F1NEW1
Ensembl:ENSGALT00000039711 ArrayExpress:F1NEW1 Uniprot:F1NEW1
Length = 362
Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 119/284 (41%), Positives = 180/284 (63%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG +K PWVEKYRP+++ +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 27 SGEGKKLKPVPWVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 86
Query: 92 LAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFAS-TQSFSFG---VKASVKLVL 146
LA AR+L+G + + +LELNASD+RGI V+R++++ FA T S S V K+V+
Sbjct: 87 LAAARELFGPELFRQRVLELNASDERGIQVIREKVKAFAQLTASGSRADGKVCPPFKIVI 146
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT AQ ALRR +EK +K TRF LICN +++II L SRC++FRF PL
Sbjct: 147 LDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQ 206
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCTGN 264
+RL V E E + +T ++ LV++ +GD+RKA+ LQS M ++ITE+ V G
Sbjct: 207 QRLLDVSEKENVKITSEAVSYLVKVSDGDLRKAITYLQSATRLMGGKEITEKTVTEIAG- 265
Query: 265 PLPKD-IEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREV 307
+P++ I+ + + SF + + +++ + +G A+ +V ++
Sbjct: 266 VIPRETIDGLLSACSSGSF-EKLETVAKNLINEGYAVAQLVNQL 308
>UNIPROTKB|F1NIY0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917
EMBL:AADN02020726 IPI:IPI00574772 Ensembl:ENSGALT00000014162
ArrayExpress:F1NIY0 Uniprot:F1NIY0
Length = 359
Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 119/284 (41%), Positives = 180/284 (63%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG +K PWVEKYRP+++ +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 27 SGEGKKLKPVPWVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 86
Query: 92 LAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFAS-TQSFSFG---VKASVKLVL 146
LA AR+L+G + + +LELNASD+RGI V+R++++ FA T S S V K+V+
Sbjct: 87 LAAARELFGPELFRQRVLELNASDERGIQVIREKVKAFAQLTASGSRADGKVCPPFKIVI 146
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT AQ ALRR +EK +K TRF LICN +++II L SRC++FRF PL
Sbjct: 147 LDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQ 206
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCTGN 264
+RL V E E + +T ++ LV++ +GD+RKA+ LQS M ++ITE+ V G
Sbjct: 207 QRLLDVSEKENVKITSEAVSYLVKVSDGDLRKAITYLQSATRLMGGKEITEKTVTEIAG- 265
Query: 265 PLPKD-IEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREV 307
+P++ I+ + + SF + + +++ + +G A+ +V ++
Sbjct: 266 VIPRETIDGLLSACSSGSF-EKLETVAKNLINEGYAVAQLVNQL 308
>SGD|S000005454 [details] [associations]
symbol:RFC4 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003689 "DNA
clamp loader activity" evidence=IDA] [GO:0007062 "sister chromatid
cohesion" evidence=IPI] [GO:0005663 "DNA replication factor C
complex" evidence=ISS;IDA] [GO:0006272 "leading strand elongation"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IPI]
[GO:0031390 "Ctf18 RFC-like complex" evidence=IPI] [GO:0007049
"cell cycle" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0031389 "Rad17
RFC-like complex" evidence=IDA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 SGD:S000005454 GO:GO:0005524 GO:GO:0005634
EMBL:BK006948 GO:GO:0003677 GO:GO:0006298 EMBL:X83121 GO:GO:0017111
KO:K10755 eggNOG:COG0470 GO:GO:0031390 GO:GO:0007062 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 EMBL:U26030 PDB:1SXJ
PDBsum:1SXJ GO:GO:0031389 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 Pfam:PF08542 OrthoDB:EOG4PP1RM EMBL:L20502
EMBL:Z74836 PIR:A53845 RefSeq:NP_014547.1 ProteinModelPortal:P40339
SMR:P40339 DIP:DIP-2530N IntAct:P40339 MINT:MINT-540691
STRING:P40339 PaxDb:P40339 PeptideAtlas:P40339 EnsemblFungi:YOL094C
GeneID:854059 KEGG:sce:YOL094C CYGD:YOL094c OMA:TMELYSN
EvolutionaryTrace:P40339 NextBio:975656 Genevestigator:P40339
GermOnline:YOL094C Uniprot:P40339
Length = 323
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 110/263 (41%), Positives = 163/263 (61%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRPQ L+D+ +++ +D + ++ + +PH+++ G PG GKT+++ +A +L G
Sbjct: 10 PWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGR 69
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y + +LELNASDDRGIDVVR QI+ FA + K K+V+LDEAD+MT AQ AL
Sbjct: 70 SYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKH--KIVILDEADSMTAGAQQAL 127
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+ +TRFA CNQ NKII LQSRC R++ L V +RL +I+ E + T
Sbjct: 128 RRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKLEDVKYT 187
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
GL A++ GDMR+A+N LQST + + V+ +P P ++++ LL +
Sbjct: 188 NDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKM---LLASN 244
Query: 282 FADSFKRISEMKMRKGLALVDIV 304
DS + + +KG + +DIV
Sbjct: 245 LEDSIQILRTDLWKKGYSSIDIV 267
>ZFIN|ZDB-GENE-040824-3 [details] [associations]
symbol:rfc4 "replication factor C (activator 1) 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0060041 "retina development in
camera-type eye" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 ZFIN:ZDB-GENE-040824-3 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0060041 GO:GO:0017111 KO:K10755
eggNOG:COG0470 SUPFAM:SSF48019 HOVERGEN:HBG002053 Pfam:PF08542
CTD:5984 HOGENOM:HOG000224154 OMA:ICFRGTF OrthoDB:EOG4Q58PN
EMBL:AY648805 IPI:IPI00506924 RefSeq:NP_999902.2 UniGene:Dr.77554
ProteinModelPortal:Q6DRF4 STRING:Q6DRF4 PRIDE:Q6DRF4 GeneID:406435
KEGG:dre:406435 NextBio:20818031 ArrayExpress:Q6DRF4 Bgee:Q6DRF4
Uniprot:Q6DRF4
Length = 358
Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
Identities = 120/285 (42%), Positives = 172/285 (60%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG +A PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 24 SGGEKKQRAVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 83
Query: 92 LAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS------VKL 144
LA AR+LYG Y +LELNASD+RGI VVR++++ FA Q G + K+
Sbjct: 84 LAAARELYGPDLYRQRVLELNASDERGIQVVREKVKRFA--QLTVAGTRPDGKTCPPFKI 141
Query: 145 VLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVH 204
++LDEAD+MT AQ ALRR +EK ++ TRF LICN V++II L SRC++FRF PL
Sbjct: 142 IILDEADSMTSAAQAALRRTMEKESRTTRFCLICNYVSRIIEPLTSRCSKFRFKPLANDV 201
Query: 205 VTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS-THMASQ-QITEEAVYLCT 262
ER+ + E L T G+ ALVR+ GD+RKA+ LQS + S+ +ITE+ +
Sbjct: 202 QQERILEICRKENLKYTTEGVDALVRVSEGDLRKAITFLQSGARLNSEREITEQTIIEIA 261
Query: 263 GNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREV 307
G PK I+ + + +F + +M + +G A +++ ++
Sbjct: 262 GVVPPKVIQSLLHICYKGTFEKLEVAVKDM-IDQGYAATNLLNQL 305
>UNIPROTKB|P53033 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006302
"double-strand break repair" evidence=TAS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005654 GO:GO:0003677
GO:GO:0006260 GO:GO:0000724 GO:GO:0017111 KO:K10755 eggNOG:COG0470
Reactome:REACT_115612 SUPFAM:SSF48019 GO:GO:0005663 CTD:5982
GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI OrthoDB:EOG48WC2D Pfam:PF08542
EMBL:U12438 IPI:IPI00586061 PIR:I50704 RefSeq:NP_990861.1
UniGene:Gga.883 ProteinModelPortal:P53033 SMR:P53033 STRING:P53033
Ensembl:ENSGALT00000001980 GeneID:396542 KEGG:gga:396542
InParanoid:P53033 NextBio:20816578 Uniprot:P53033
Length = 359
Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
Identities = 109/266 (40%), Positives = 162/266 (60%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L +V + D V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 42 PWVEKYRPLKLCEVVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGP 101
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ AL
Sbjct: 102 ALKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTLP-KGRHKIIILDEADSMTDGAQQAL 159
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R+ L + RL ++E E + T
Sbjct: 160 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILARLLKIVEKEDVPYT 219
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A++ GDMR+ALN LQST+ I E V+ P P ++++ +N +
Sbjct: 220 DDGLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKEMIQHCINAN 279
Query: 282 FADSFKRISEMKMRKGLALVDIVREV 307
+++K ++ + R G + D++ +
Sbjct: 280 IDEAYKILAHL-WRLGYSPEDVIGNI 304
>DICTYBASE|DDB_G0291868 [details] [associations]
symbol:rfc2 "replication factor C subunit 2"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=ISS] [GO:0031391 "Elg1 RFC-like complex" evidence=ISS]
[GO:0031389 "Rad17 RFC-like complex" evidence=ISS] [GO:0006298
"mismatch repair" evidence=ISS] [GO:0006272 "leading strand
elongation" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0291868 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000155_GR GO:GO:0003677 GO:GO:0006298
EMBL:AAFI02000186 GO:GO:0017111 KO:K10755 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 OMA:IQCLARI Pfam:PF08542 RefSeq:XP_629875.1
HSSP:P40339 ProteinModelPortal:Q54E21 SMR:Q54E21 STRING:Q54E21
EnsemblProtists:DDB0232231 GeneID:8628373 KEGG:ddi:DDB_G0291868
ProtClustDB:CLSZ2728742 Uniprot:Q54E21
Length = 338
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 109/264 (41%), Positives = 158/264 (59%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP + D+ + + V ++ ++ + LP++++ GPPGTGKTS+IL +AR L GA
Sbjct: 21 PWVEKYRPILIKDIVGNEETVSRLESISKDGNLPNIIISGPPGTGKTSSILCLARALLGA 80
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y + ELNASDDR +DVVR +I+ FA + + G K+++LDE D+MT AQ A
Sbjct: 81 NYKEAVYELNASDDRTLDVVRDKIKSFAMKKVTLPAGRH---KIIILDEVDSMTSGAQQA 137
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR++E Y+ TRFA CNQ KII +QSRC RF L + RL+ V++ E +
Sbjct: 138 LRRIMEIYSGTTRFAFACNQSTKIIEPIQSRCAVLRFTRLSDSQILTRLREVVQIEKVPY 197
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
T+ GLAA++ GDMR+ALN LQ+TH I E V P P I+QI
Sbjct: 198 TDDGLAAIIFTAEGDMRQALNNLQATHSGFGLINAENVTKVCDQPHPLIIKQIIALCAKS 257
Query: 281 SFADSFKRISEMKMRKGLALVDIV 304
F +++ + ++ G + +DI+
Sbjct: 258 DFKEAYPFLKKL-WDDGYSSIDII 280
>UNIPROTKB|P35249 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0048015 "phosphatidylinositol-mediated
signaling" evidence=NAS] [GO:0006260 "DNA replication"
evidence=NAS;TAS] [GO:0006281 "DNA repair" evidence=NAS;TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] Reactome:REACT_216
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0003677 EMBL:CH471052
GO:GO:0017111 GO:GO:0048015 GO:GO:0000084 KO:K10755 eggNOG:COG0470
GO:GO:0000075 GO:GO:0000722 Reactome:REACT_383 GO:GO:0006283
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 CTD:5984
HOGENOM:HOG000224154 EMBL:M87339 EMBL:AF538718 EMBL:BT006987
EMBL:CR536561 EMBL:BC017452 EMBL:BC024022 IPI:IPI00017381
PIR:A45253 RefSeq:NP_002907.1 RefSeq:NP_853551.1 UniGene:Hs.732098
ProteinModelPortal:P35249 SMR:P35249 DIP:DIP-24267N IntAct:P35249
MINT:MINT-1485723 STRING:P35249 PhosphoSite:P35249 DMDM:1703052
PaxDb:P35249 PeptideAtlas:P35249 PRIDE:P35249 DNASU:5984
Ensembl:ENST00000296273 Ensembl:ENST00000392481 GeneID:5984
KEGG:hsa:5984 UCSC:uc003fqz.3 GeneCards:GC03M186507 HGNC:HGNC:9972
HPA:CAB004557 MIM:102577 neXtProt:NX_P35249 PharmGKB:PA34341
InParanoid:P35249 OMA:QQLSQNC PhylomeDB:P35249 ChiTaRS:RFC4
GenomeRNAi:5984 NextBio:23297 ArrayExpress:P35249 Bgee:P35249
CleanEx:HS_RFC4 Genevestigator:P35249 GermOnline:ENSG00000163918
Uniprot:P35249
Length = 363
Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
Identities = 118/283 (41%), Positives = 176/283 (62%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG K PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 29 SGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 88
Query: 92 LAVARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFAS---TQSFSFGVKAS-VKLVL 146
LA AR+L+G + + +LELNASD+RGI VVR+++++FA + S S G K+V+
Sbjct: 89 LAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVI 148
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L SRC++FRF PL
Sbjct: 149 LDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQ 208
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS-THMAS-QQITEEAVYLCTGN 264
+RL + + E + +++ G+A LV++ GD+RKA+ LQS T + ++ITE+ + G
Sbjct: 209 QRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGV 268
Query: 265 PLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREV 307
+ I+ + + SF D + + + + +G A +V ++
Sbjct: 269 IPAEKIDGVFAACQSGSF-DKLEAVVKDLIDEGHAATQLVNQL 310
>RGD|1310142 [details] [associations]
symbol:Rfc4 "replication factor C (activator 1) 4" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1310142
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755
eggNOG:COG0470 EMBL:CH473999 SUPFAM:SSF48019 HOVERGEN:HBG002053
Pfam:PF08542 CTD:5984 HOGENOM:HOG000224154
GeneTree:ENSGT00550000074917 OrthoDB:EOG4Q58PN EMBL:BC168166
IPI:IPI00370513 RefSeq:NP_001099339.1 UniGene:Rn.17046
STRING:B4F778 Ensembl:ENSRNOT00000002487 GeneID:288003
KEGG:rno:288003 UCSC:RGD:1310142 OMA:INIPHED NextBio:627397
Genevestigator:B4F778 Uniprot:B4F778
Length = 364
Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
Identities = 120/283 (42%), Positives = 174/283 (61%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG +K PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 29 SGETKKVKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 88
Query: 92 LAVARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFAS---TQSFSFGVKAS-VKLVL 146
LA AR+L+G + + +LELNASD+RGI VVR+++++FA + S S G K+V+
Sbjct: 89 LAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVI 148
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L SRC++FRF PL
Sbjct: 149 LDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQ 208
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS-THMAS-QQITEEAVYLCTGN 264
+RL + E E + + + +A LVR+ GD+RKA+ LQS T + ++I+E+ + G
Sbjct: 209 KRLLDIAEKENVKIGDEEIAYLVRISEGDLRKAITFLQSATRLTGGKEISEDVITDIAGV 268
Query: 265 PLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREV 307
IE I + SF D + + + + +G A +V ++
Sbjct: 269 IPAATIEGIVTACHSGSF-DKLEAVLKNLIDEGHAATQLVNQL 310
>ZFIN|ZDB-GENE-050306-29 [details] [associations]
symbol:rfc2 "replication factor C (activator 1) 2"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
ZFIN:ZDB-GENE-050306-29 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 SUPFAM:SSF48019 GeneTree:ENSGT00550000075050
Pfam:PF08542 EMBL:CR450711 IPI:IPI00505688
Ensembl:ENSDART00000122513 Bgee:F1R0T0 Uniprot:F1R0T0
Length = 384
Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
Identities = 111/266 (41%), Positives = 161/266 (60%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L ++ + + V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 67 PWVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 126
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ AL
Sbjct: 127 AMKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTLP-KGRHKIIILDEADSMTDGAQQAL 184
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R++ L + RL V+E E L VT
Sbjct: 185 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLRDEQIMMRLTEVVEKENLHVT 244
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
GL A++ GDMR+ALN LQST+ I E V+ P P ++ + +N +
Sbjct: 245 NDGLEAIIFTAQGDMRQALNNLQSTNSGFGYINSENVFKVCDEPHPLLVKSMLEHCVNAN 304
Query: 282 FADSFKRISEMKMRKGLALVDIVREV 307
+++K I ++ G + DI+ +
Sbjct: 305 IDEAYKIIEQL-WSLGYSPEDIIGNI 329
>UNIPROTKB|C9JZI1 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 EMBL:AC112907 Pfam:PF08542 HOGENOM:HOG000224154
HGNC:HGNC:9972 ChiTaRS:RFC4 IPI:IPI00925945
ProteinModelPortal:C9JZI1 SMR:C9JZI1 STRING:C9JZI1
Ensembl:ENST00000433496 ArrayExpress:C9JZI1 Bgee:C9JZI1
Uniprot:C9JZI1
Length = 336
Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
Identities = 110/234 (47%), Positives = 156/234 (66%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG K PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 29 SGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 88
Query: 92 LAVARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFAS---TQSFSFGVKAS-VKLVL 146
LA AR+L+G + + +LELNASD+RGI VVR+++++FA + S S G K+V+
Sbjct: 89 LAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVI 148
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L SRC++FRF PL
Sbjct: 149 LDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQ 208
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS-THMAS-QQITEEAV 258
+RL + + E + +++ G+A LV++ GD+RKA+ LQS T + ++ITE+ +
Sbjct: 209 QRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVI 262
>UNIPROTKB|E2R2M6 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 CTD:5984 OMA:ICFRGTF
GeneTree:ENSGT00550000074917 EMBL:AAEX03017297 RefSeq:XP_535837.1
Ensembl:ENSCAFT00000021708 GeneID:478667 KEGG:cfa:478667
NextBio:20853970 Uniprot:E2R2M6
Length = 363
Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
Identities = 116/249 (46%), Positives = 160/249 (64%)
Query: 21 KP--KDNGKNVIV--SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH 76
KP KD G SG K PWVEKYRP+ + +VA ++V + + LP+
Sbjct: 13 KPPLKDRGIAATAGSSGENKKTKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPN 72
Query: 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFAS---TQ 132
LL YGPPGTGKTSTILA AR+L+G + + +LELNASD+RGI VVR+++++FA +
Sbjct: 73 LLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSG 132
Query: 133 SFSFGVKAS-VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSR 191
S S G K+V+LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L SR
Sbjct: 133 SRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSR 192
Query: 192 CTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS-THMAS 250
C++FRF PL +RL + + E + V+ G+A LV++ GD+RKA+ LQS T +
Sbjct: 193 CSKFRFKPLSDKIQQQRLLDIADKEHVKVSNEGIAYLVKVSEGDLRKAITFLQSATRLTG 252
Query: 251 -QQITEEAV 258
++ITE+ +
Sbjct: 253 GKEITEKVI 261
>ASPGD|ASPL0000039105 [details] [associations]
symbol:AN2969 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0033314 "mitotic DNA
replication checkpoint" evidence=IEA] [GO:0006272 "leading strand
elongation" evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IEA] [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0031390 "Ctf18 RFC-like
complex" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0031389
"Rad17 RFC-like complex" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:BN001306 GO:GO:0017111 SUPFAM:SSF48019 Pfam:PF08542
OMA:QQLSQNC EnsemblFungi:CADANIAT00010111 Uniprot:C8VJ05
Length = 387
Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 106/232 (45%), Positives = 148/232 (63%)
Query: 25 NGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPG 84
+ K G + PWVEKYRP++L DVAA + R + LPH+L YGPPG
Sbjct: 18 SSKQKPTEGKEEQSRLQPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPG 77
Query: 85 TGKTSTILAVARKLYG-AQYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASV 142
TGKTSTILA+A+ L+G A Y + ILELNASD+RGI +VR++++ FA Q S G+ A
Sbjct: 78 TGKTSTILALAKSLFGPALYRSRILELNASDERGIGIVREKVKGFARVQLSHPTGLDAEY 137
Query: 143 ---------KLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCT 193
K+++LDEAD+MT+DAQ ALRR +E+Y++ TRF L+CN V +II L SRC+
Sbjct: 138 FEKYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCS 197
Query: 194 RFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
+FRF PL+ +RL + + E L + G + L+ +GD+R+A+ LQS
Sbjct: 198 KFRFKPLDNSAAGDRLAQIAQLEKLSLENGVVDKLISCSDGDLRRAITYLQS 249
>UNIPROTKB|Q29RS9 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542
CTD:5984 HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917
OMA:QQLSQNC EMBL:DAAA02001847 EMBL:DAAA02001846 EMBL:BC114041
IPI:IPI00728867 RefSeq:NP_001039359.1 UniGene:Bt.102331
STRING:Q29RS9 Ensembl:ENSBTAT00000045810 GeneID:504637
KEGG:bta:504637 NextBio:20866768 Uniprot:Q29RS9
Length = 337
Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 112/245 (45%), Positives = 158/245 (64%)
Query: 23 KDNGKNVIV--SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLY 80
KD G SG K PWVEKYRP+ + +VA ++V + + LP+LL Y
Sbjct: 18 KDRGVTATARSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFY 77
Query: 81 GPPGTGKTSTILAVARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFAS---TQSFSF 136
GPPGTGKTSTILA AR+L+G + + +LELNASD+RGI VVR+++++FA + S S
Sbjct: 78 GPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSD 137
Query: 137 GVKAS-VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRF 195
G K+V+LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L SRC++F
Sbjct: 138 GKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKF 197
Query: 196 RFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS-THMAS-QQI 253
RF PL +RL + + E + ++ G+A LV++ GD+RKA+ LQS T + +++
Sbjct: 198 RFKPLSDKIQQQRLLDIADKEHVKISNEGIAYLVQVSEGDLRKAITFLQSATRLTGGKEV 257
Query: 254 TEEAV 258
TE+ +
Sbjct: 258 TEKVI 262
>UNIPROTKB|P35250 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006260 "DNA replication"
evidence=TAS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=TAS] [GO:0032201 "telomere maintenance via
semi-conservative replication" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_216 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 Reactome:REACT_115566
GO:GO:0005654 GO:GO:0003677 GO:GO:0017111 GO:GO:0000084 KO:K10755
eggNOG:COG0470 GO:GO:0000075 GO:GO:0000722 EMBL:CH471200
Orphanet:904 Reactome:REACT_383 GO:GO:0006283 GO:GO:0006271
GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019 GO:GO:0005663
EMBL:AF045555 EMBL:AC005081 CTD:5982 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI Pfam:PF08542 EMBL:M87338
EMBL:AF483622 EMBL:AB451243 EMBL:BC002813 IPI:IPI00017412
IPI:IPI00218280 PIR:A42700 RefSeq:NP_002905.2 RefSeq:NP_852136.1
UniGene:Hs.647062 ProteinModelPortal:P35250 SMR:P35250
DIP:DIP-34367N IntAct:P35250 STRING:P35250 PhosphoSite:P35250
DMDM:2507300 PaxDb:P35250 PeptideAtlas:P35250 PRIDE:P35250
DNASU:5982 Ensembl:ENST00000055077 Ensembl:ENST00000352131
Ensembl:ENST00000573234 Ensembl:ENST00000576908 GeneID:5982
KEGG:hsa:5982 UCSC:uc003uaj.3 GeneCards:GC07M073645 HGNC:HGNC:9970
HPA:HPA029493 MIM:194050 MIM:600404 neXtProt:NX_P35250
PharmGKB:PA34339 InParanoid:P35250 PhylomeDB:P35250 ChiTaRS:RFC2
GenomeRNAi:5982 NextBio:23285 ArrayExpress:P35250 Bgee:P35250
CleanEx:HS_RFC2 Genevestigator:P35250 GermOnline:ENSG00000049541
Uniprot:P35250
Length = 354
Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 110/266 (41%), Positives = 161/266 (60%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L ++ + D V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 37 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 96
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ AL
Sbjct: 97 ALKDAMLELNASNDRGIDVVRNKIKMFAQ-QKVTLP-KGRHKIIILDEADSMTDGAQQAL 154
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R+ L + RL +VIE E + T
Sbjct: 155 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYT 214
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A++ GDMR+ALN LQST I E V+ P P ++++ +N +
Sbjct: 215 DDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNAN 274
Query: 282 FADSFKRISEMKMRKGLALVDIVREV 307
+++K ++ + G + DI+ +
Sbjct: 275 IDEAYKILAHL-WHLGYSPEDIIGNI 299
>MGI|MGI:2146571 [details] [associations]
symbol:Rfc4 "replication factor C (activator 1) 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:2146571
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 CTD:5984
HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917 EMBL:AK146954
EMBL:BC003335 IPI:IPI00319874 RefSeq:NP_663455.1 UniGene:Mm.386835
ProteinModelPortal:Q99J62 SMR:Q99J62 IntAct:Q99J62 STRING:Q99J62
PhosphoSite:Q99J62 PaxDb:Q99J62 PRIDE:Q99J62
Ensembl:ENSMUST00000023598 GeneID:106344 KEGG:mmu:106344
UCSC:uc007yth.1 OrthoDB:EOG4Q58PN NextBio:358165 Bgee:Q99J62
CleanEx:MM_RFC4 Genevestigator:Q99J62 GermOnline:ENSMUSG00000022881
Uniprot:Q99J62
Length = 364
Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 121/294 (41%), Positives = 176/294 (59%)
Query: 23 KDNGKNVIV--SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLY 80
KD G SG +K PWVEKYRP+ + +VA ++V + + LP+LL Y
Sbjct: 18 KDRGTPATAGSSGETKKVKPVPWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFY 77
Query: 81 GPPGTGKTSTILAVARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFAS---TQSFSF 136
GPPGTGKTSTILA AR+L+G + + +LELNASD+RGI VVR+++++FA + S S
Sbjct: 78 GPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSD 137
Query: 137 GVKAS-VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRF 195
G K+V+LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L SRC++F
Sbjct: 138 GKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKF 197
Query: 196 RFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS-THMAS-QQI 253
RF PL ERL + E E + + +A LV++ GD+RKA+ LQS T + +++
Sbjct: 198 RFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEV 257
Query: 254 TEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREV 307
+E+ + G I+ I + SF D + + + + +G A +V ++
Sbjct: 258 SEDVITDIAGVIPAATIDGIFTACHSGSF-DKLEAVVKNLIDEGHAATQLVNQL 310
>RGD|621198 [details] [associations]
symbol:Rfc2 "replication factor C (activator 1) 2" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA;ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:621198
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
GO:GO:0005663 CTD:5982 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 HOVERGEN:HBG002053 OMA:IQCLARI
OrthoDB:EOG48WC2D Pfam:PF08542 HSSP:P40339 EMBL:BC082110
IPI:IPI00194781 RefSeq:NP_446238.1 UniGene:Rn.113319
ProteinModelPortal:Q641W4 SMR:Q641W4 STRING:Q641W4 PRIDE:Q641W4
Ensembl:ENSRNOT00000001989 GeneID:116468 KEGG:rno:116468
UCSC:RGD:621198 InParanoid:Q641W4 NextBio:619010
Genevestigator:Q641W4 Uniprot:Q641W4
Length = 349
Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 109/266 (40%), Positives = 161/266 (60%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L ++ + D V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 32 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 91
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ AL
Sbjct: 92 ALKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTLP-KGRHKIIILDEADSMTDGAQQAL 149
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R+ L V RL +VIE E + T
Sbjct: 150 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLSRLMNVIEKEKVPYT 209
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A++ GDMR+ALN LQST I E V+ P P ++++ ++ +
Sbjct: 210 DDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMIQHCVDAN 269
Query: 282 FADSFKRISEMKMRKGLALVDIVREV 307
+++K ++ + G + D++ +
Sbjct: 270 IDEAYKILAHL-WHLGYSPEDVIGNI 294
>MGI|MGI:1341868 [details] [associations]
symbol:Rfc2 "replication factor C (activator 1) 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:1341868
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 EMBL:AF289664
SUPFAM:SSF48019 GO:GO:0005663 EMBL:AF139987 CTD:5982
GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI OrthoDB:EOG48WC2D Pfam:PF08542
ChiTaRS:RFC2 EMBL:AK075997 EMBL:BC023028 IPI:IPI00124744
RefSeq:NP_064406.1 UniGene:Mm.332739 ProteinModelPortal:Q9WUK4
SMR:Q9WUK4 STRING:Q9WUK4 PhosphoSite:Q9WUK4 PaxDb:Q9WUK4
PRIDE:Q9WUK4 Ensembl:ENSMUST00000023867 GeneID:19718 KEGG:mmu:19718
InParanoid:Q9WUK4 NextBio:297116 Bgee:Q9WUK4 CleanEx:MM_RFC2
Genevestigator:Q9WUK4 GermOnline:ENSMUSG00000023104 Uniprot:Q9WUK4
Length = 349
Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
Identities = 109/266 (40%), Positives = 161/266 (60%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L ++ + D V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 32 PWVEKYRPLKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 91
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ AL
Sbjct: 92 ALKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTLP-KGRHKIIILDEADSMTDGAQQAL 149
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R+ L V RL +VIE E + T
Sbjct: 150 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEKEKVPYT 209
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A++ GDMR+ALN LQST I E V+ P P ++++ ++ +
Sbjct: 210 DDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMIQHCVDAN 269
Query: 282 FADSFKRISEMKMRKGLALVDIVREV 307
+++K ++ + G + D++ +
Sbjct: 270 IDEAYKILAHL-WHLGYSPEDVIGNI 294
>UNIPROTKB|Q05B83 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 EMBL:BC122635 IPI:IPI00704020
RefSeq:NP_001074372.1 UniGene:Bt.35362 ProteinModelPortal:Q05B83
SMR:Q05B83 STRING:Q05B83 PRIDE:Q05B83 Ensembl:ENSBTAT00000024740
GeneID:508652 KEGG:bta:508652 CTD:5982 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 HOVERGEN:HBG002053 InParanoid:Q05B83
OMA:IQCLARI OrthoDB:EOG48WC2D NextBio:20868620 ArrayExpress:Q05B83
Pfam:PF08542 Uniprot:Q05B83
Length = 352
Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
Identities = 109/266 (40%), Positives = 161/266 (60%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L ++ + D V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 35 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 94
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ AL
Sbjct: 95 ALKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTLP-KGRHKIIILDEADSMTDGAQQAL 152
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R+ L + + RL VIE E + T
Sbjct: 153 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDMQILARLLSVIEKEKVQYT 212
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A++ GDMR+ALN LQST+ I E V+ P P ++++ ++
Sbjct: 213 DDGLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKEMIQHCVSAD 272
Query: 282 FADSFKRISEMKMRKGLALVDIVREV 307
+++K ++ + G + DI+ +
Sbjct: 273 IDEAYKILAHL-WHLGYSPEDIIGNI 297
>UNIPROTKB|F1SFI3 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917 OMA:QQLSQNC
EMBL:CU633961 Ensembl:ENSSSCT00000012916 Uniprot:F1SFI3
Length = 366
Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
Identities = 119/296 (40%), Positives = 176/296 (59%)
Query: 23 KDNGKNVIV--SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLY 80
KD G SG K PWVEKYRP+ + +VA ++V + + LP+LL Y
Sbjct: 18 KDRGVAATARSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFY 77
Query: 81 GPPGTGKTSTILAVARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFA------STQS 133
GPPGTGKTSTILA AR+L+G + + +LELNASD+RGI VVR+++++FA S
Sbjct: 78 GPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSE 137
Query: 134 FSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCT 193
S K+V+LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L SRC+
Sbjct: 138 ISGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCS 197
Query: 194 RFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS-THMAS-Q 251
+FRF PL +RL + + E + +++ G+A LV++ GD+RKA+ LQS T + +
Sbjct: 198 KFRFKPLSDKIQQQRLLDIADKEHVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGK 257
Query: 252 QITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREV 307
++TE+ + G + I+ + + SF D + + + + +G A V ++
Sbjct: 258 EVTEKMITDIAGVVPTETIDGVLAACQSGSF-DKLEAVVKDLIDEGHAATQFVNQL 312
>UNIPROTKB|E2QSU1 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GO:GO:0005663 Pfam:PF08542
Ensembl:ENSCAFT00000019010 Uniprot:E2QSU1
Length = 316
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 109/266 (40%), Positives = 160/266 (60%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L ++ + D V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 35 PWVEKYRPVKLNEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGP 94
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ AL
Sbjct: 95 ALKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTLP-KGRHKIIILDEADSMTDGAQQAL 152
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R+ L V RL V+E E + T
Sbjct: 153 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLLTVLEQEKVPYT 212
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A++ GDMR+ALN +QST I E V+ P P ++++ +N +
Sbjct: 213 DDGLEAVIFTAQGDMRQALNNVQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNAN 272
Query: 282 FADSFKRISEMKMRKGLALVDIVREV 307
+++K ++ + G + DI+ +
Sbjct: 273 IDEAYKILAHL-WHLGYSPEDIIGNI 297
>UNIPROTKB|F6ULR2 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GeneTree:ENSGT00550000075050 OMA:IQCLARI
Pfam:PF08542 Ensembl:ENSCAFT00000019010 EMBL:AAEX03004231
EMBL:AAEX03004232 Uniprot:F6ULR2
Length = 364
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 109/266 (40%), Positives = 160/266 (60%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L ++ + D V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 47 PWVEKYRPVKLNEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGP 106
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ AL
Sbjct: 107 ALKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTLP-KGRHKIIILDEADSMTDGAQQAL 164
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R+ L V RL V+E E + T
Sbjct: 165 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLLTVLEQEKVPYT 224
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A++ GDMR+ALN +QST I E V+ P P ++++ +N +
Sbjct: 225 DDGLEAVIFTAQGDMRQALNNVQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNAN 284
Query: 282 FADSFKRISEMKMRKGLALVDIVREV 307
+++K ++ + G + DI+ +
Sbjct: 285 IDEAYKILAHL-WHLGYSPEDIIGNI 309
>TAIR|locus:2015233 [details] [associations]
symbol:RFC2 "replication factor C 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 EMBL:AC010795 HOGENOM:HOG000224155 Pfam:PF08542
OMA:TMELYSN HSSP:Q8U4J3 EMBL:BT031353 IPI:IPI00535046 PIR:B96657
RefSeq:NP_176504.1 UniGene:At.36170 ProteinModelPortal:Q9CAM7
SMR:Q9CAM7 STRING:Q9CAM7 PaxDb:Q9CAM7 PRIDE:Q9CAM7
EnsemblPlants:AT1G63160.1 GeneID:842620 KEGG:ath:AT1G63160
TAIR:At1g63160 InParanoid:Q9CAM7 PhylomeDB:Q9CAM7
ProtClustDB:PLN03025 Genevestigator:Q9CAM7 Uniprot:Q9CAM7
Length = 333
Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
Identities = 112/266 (42%), Positives = 156/266 (58%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP + D+ + D V + + + +P+L+L GPPGTGKT++ILA+A +L G
Sbjct: 16 PWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGT 75
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y +LELNASDDRGIDVVR +I+ FA + K+V+LDEAD+MT AQ AL
Sbjct: 76 NYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTL--PPGRHKVVILDEADSMTSGAQQAL 133
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR IE Y+ +TRFAL CN KII +QSRC RF+ L + RL V+ AE +
Sbjct: 134 RRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGRLLVVVAAEKVPYV 193
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
GL A++ +GDMR+ALN LQ+T + +E V+ P P ++ I +L
Sbjct: 194 PEGLEAIIFTADGDMRQALNNLQATFSGFSFVNQENVFKVCDQPHPLHVKNIVRNVLESK 253
Query: 282 F---ADSFKRISEMKMRKGLALVDIV 304
F D K++ ++ G + DI+
Sbjct: 254 FDIACDGLKQLYDL----GYSPTDII 275
>FB|FBgn0030871 [details] [associations]
symbol:CG8142 species:7227 "Drosophila melanogaster"
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0031122 "cytoplasmic microtubule organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 GO:GO:0003677
GO:GO:0006260 EMBL:AE014298 GO:GO:0046331 GO:GO:0017111
GO:GO:0031122 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542
GeneTree:ENSGT00550000074917 HSSP:Q8U4J3 EMBL:AY069598
RefSeq:NP_573245.1 UniGene:Dm.2050 SMR:Q9VX15 IntAct:Q9VX15
MINT:MINT-847740 STRING:Q9VX15 EnsemblMetazoa:FBtr0074472
GeneID:32763 KEGG:dme:Dmel_CG8142 UCSC:CG8142-RA
FlyBase:FBgn0030871 InParanoid:Q9VX15 OMA:VGQMMEQ OrthoDB:EOG4Q2BXJ
GenomeRNAi:32763 NextBio:780237 Uniprot:Q9VX15
Length = 353
Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
Identities = 99/221 (44%), Positives = 150/221 (67%)
Query: 33 GTPPDIKA--SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTST 90
GTP + +PWVEKYRP+++ DV ++V + + LP++LLYGPPGTGKTST
Sbjct: 20 GTPAARRKPPAPWVEKYRPRNVDDVVEQSEVVAVLRKCVEGGDLPNMLLYGPPGTGKTST 79
Query: 91 ILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS----VKLVL 146
ILA +R+++G + + ILELNASD+RGI+VVR +I++F+ + S K+++
Sbjct: 80 ILAASRQIFGDMFKDRILELNASDERGINVVRTKIKNFSQLSASSVRPDGKPCPPFKIII 139
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT AQ ALRR +EK +++TRF LICN V++II + SRC++FRF L V
Sbjct: 140 LDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGEDKVI 199
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH 247
+RLK++ E EG+ + + ++V++ GD+R+A+ LQS +
Sbjct: 200 DRLKYICEMEGVKIEDDAYKSIVKISGGDLRRAITTLQSCY 240
>FB|FBgn0260985 [details] [associations]
symbol:RfC4 "Replication factor C subunit 4" species:7227
"Drosophila melanogaster" [GO:0007076 "mitotic chromosome
condensation" evidence=IMP;NAS] [GO:0000819 "sister chromatid
segregation" evidence=NAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=NAS;TAS] [GO:0006260 "DNA replication"
evidence=ISS;NAS;TAS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS;NAS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA;NAS]
[GO:0016321 "female meiosis chromosome segregation" evidence=IMP]
[GO:0007067 "mitosis" evidence=IMP] [GO:0005634 "nucleus"
evidence=NAS;IDA] [GO:0000077 "DNA damage checkpoint" evidence=IMP]
[GO:0000076 "DNA replication checkpoint" evidence=IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005875 "microtubule associated
complex" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005634 GO:GO:0000077
GO:GO:0005875 EMBL:AE014296 GO:GO:0022008 GO:GO:0003677
GO:GO:0006281 GO:GO:0046331 GO:GO:0017111 GO:GO:0007076 KO:K10755
eggNOG:COG0470 GO:GO:0016321 GO:GO:0000076 GO:GO:0006271
SUPFAM:SSF48019 EMBL:U15967 GeneTree:ENSGT00550000075050
OMA:IQCLARI Pfam:PF08542 EMBL:AY094829 PIR:S55020
RefSeq:NP_523915.1 UniGene:Dm.839 ProteinModelPortal:P53034
SMR:P53034 DIP:DIP-22077N IntAct:P53034 MINT:MINT-925288
STRING:P53034 PaxDb:P53034 PRIDE:P53034 EnsemblMetazoa:FBtr0073264
GeneID:38492 KEGG:dme:Dmel_CG14999 CTD:5984 FlyBase:FBgn0260985
InParanoid:P53034 OrthoDB:EOG4P8D0Q PhylomeDB:P53034
GenomeRNAi:38492 NextBio:808930 Bgee:P53034 GermOnline:CG14999
Uniprot:P53034
Length = 331
Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
Identities = 108/266 (40%), Positives = 155/266 (58%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PW+EKYRP ++ + D V + ++ P++++ GPPG GKT+TI +AR L G
Sbjct: 17 PWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGD 76
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y +LELNAS++RGIDVVR +I+ FA Q + + K+V+LDEAD+MT+ AQ AL
Sbjct: 77 SYKEAVLELNASNERGIDVVRNKIKMFAQ-QKVTLP-RGRHKIVILDEADSMTEGAQQAL 134
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+ TRFAL CN KII +QSRC RF L V +L V + E L+ T
Sbjct: 135 RRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYT 194
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
E GL A+V GDMR+ LN LQST IT E V+ P PK +E++ +
Sbjct: 195 EDGLEAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCDEPHPKLLEEMIHHCAAND 254
Query: 282 FADSFKRISEMKMRKGLALVDIVREV 307
++K ++++ + G + DI+ +
Sbjct: 255 IHKAYKILAKL-WKLGYSPEDIIANI 279
>POMBASE|SPAC1687.03c [details] [associations]
symbol:rfc4 "DNA replication factor C complex subunit
Rfc4 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=IC] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006272 "leading strand
elongation" evidence=ISO] [GO:0031389 "Rad17 RFC-like complex"
evidence=TAS] [GO:0031390 "Ctf18 RFC-like complex" evidence=TAS]
[GO:0031391 "Elg1 RFC-like complex" evidence=IDA] [GO:0043596
"nuclear replication fork" evidence=IC] [GO:0003689 "DNA clamp
loader activity" evidence=TAS] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748
PomBase:SPAC1687.03c GO:GO:0005829 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0007049 GO:GO:0000790
GO:GO:0043596 GO:GO:0017111 KO:K10755 eggNOG:COG0470 GO:GO:0031390
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 HOGENOM:HOG000224155 Pfam:PF08542 PIR:T37746
RefSeq:NP_593121.1 ProteinModelPortal:O94449 SMR:O94449
STRING:O94449 EnsemblFungi:SPAC1687.03c.1 GeneID:2542790
KEGG:spo:SPAC1687.03c OMA:GTYELPW OrthoDB:EOG4PP1RM
NextBio:20803834 Uniprot:O94449
Length = 342
Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
Identities = 103/226 (45%), Positives = 141/226 (62%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L D+ + + +D + + E +PHL++ G PG GKT++IL +A L G
Sbjct: 22 PWVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILCLAHALLGP 81
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y +LELNASD+RGIDVVR +I+ FA + K+++LDEAD+MT AQ AL
Sbjct: 82 AYKEGVLELNASDERGIDVVRNRIKAFAQKKVIL--PPGRHKIIILDEADSMTAGAQQAL 139
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+ TRFAL CNQ NKII +QSRC R++ L V +RL ++ +AE ++ T
Sbjct: 140 RRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVLQRLLNICKAEKVNYT 199
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLP 267
+ GLAAL+ GDMR+A+N LQST + E V+ P P
Sbjct: 200 DDGLAALIMTAEGDMRQAVNNLQSTVAGFGLVNGENVFRVADQPSP 245
>POMBASE|SPAC23D3.02 [details] [associations]
symbol:rfc2 "DNA replication factor C complex subunit
Rfc2" species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005663 "DNA replication
factor C complex" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006270 "DNA replication initiation" evidence=IMP] [GO:0031389
"Rad17 RFC-like complex" evidence=TAS] [GO:0031390 "Ctf18 RFC-like
complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like complex"
evidence=IDA] [GO:0033314 "mitotic DNA replication checkpoint"
evidence=IMP] [GO:0043596 "nuclear replication fork" evidence=IC]
[GO:0003689 "DNA clamp loader activity" evidence=TAS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 PomBase:SPAC23D3.02
GO:GO:0005829 GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0003677 GO:GO:0000790 GO:GO:0006270 GO:GO:0043596
GO:GO:0017111 KO:K10755 eggNOG:COG0470 GO:GO:0033314 GO:GO:0031390
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 PIR:T38278 RefSeq:NP_594540.1
ProteinModelPortal:Q09843 SMR:Q09843 STRING:Q09843
EnsemblFungi:SPAC23D3.02.1 GeneID:2541908 KEGG:spo:SPAC23D3.02
HOGENOM:HOG000224154 OMA:ICFRGTF OrthoDB:EOG4ZCXDF NextBio:20802995
Uniprot:Q09843
Length = 340
Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
Identities = 97/211 (45%), Positives = 142/211 (67%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
K+ PWVE YRP++L V++ V + + N LPH+L YG PGTGKTSTILA++R+L
Sbjct: 17 KSIPWVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYGSPGTGKTSTILALSREL 76
Query: 99 YGAQY-HNMILELNASDDRGIDVVRQQIQDFASTQSFSF--GVKAS-VKLVLLDEADAMT 154
+G Q + +LELNASD+RGI ++R++++ FA T + G K+++LDEAD+MT
Sbjct: 77 FGPQLMKSRVLELNASDERGISIIREKVKSFAKTTVTNKVDGYPCPPFKIIILDEADSMT 136
Query: 155 KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE 214
+DAQ ALRR +E Y + TRF LICN + +II L SRC+++RF PL+ ++ +RL+ +
Sbjct: 137 QDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYRFKPLDNENMVKRLEFIAA 196
Query: 215 AEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
+ + + G + ALV GDMRKA+ LQS
Sbjct: 197 DQAVSMEPGVVNALVECSGGDMRKAITFLQS 227
>GENEDB_PFALCIPARUM|PFL2005w [details] [associations]
symbol:PFL2005w "replication factor c subunit 4"
species:5833 "Plasmodium falciparum" [GO:0006260 "DNA replication"
evidence=ISS] [GO:0005663 "DNA replication factor C complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE014188
GO:GO:0017111 KO:K10755 SUPFAM:SSF48019 GO:GO:0005663
HOGENOM:HOG000224155 OMA:IQCLARI Pfam:PF08542 HSSP:Q8U4J3
RefSeq:XP_001350805.1 ProteinModelPortal:Q8I512
EnsemblProtists:PFL2005w:mRNA GeneID:811453 KEGG:pfa:PFL2005w
EuPathDB:PlasmoDB:PF3D7_1241700 ProtClustDB:CLSZ2733842
Uniprot:Q8I512
Length = 336
Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
Identities = 106/262 (40%), Positives = 162/262 (61%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRP+ L +V + +++T+ + + +P+LLL G PGTGKT++IL +A ++ G Q
Sbjct: 18 WIEKYRPEFLDEVVGNPFVINTLKSIITSGNMPNLLLAGAPGTGKTTSILCLASEMLGNQ 77
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+LELNASDDRGI+V+R +I+ FA + S K+++LDE D+MT AQ +LR
Sbjct: 78 AKKAVLELNASDDRGINVIRDRIKSFAK-EIISLP-PGKHKIIILDEVDSMTTAAQQSLR 135
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y+ TRFAL CNQ KII ALQSRC R+ L V +R+ + + E + T+
Sbjct: 136 RIMELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLSDDQVLKRILKICDLENIKYTD 195
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAV-YLCTGNPLPKDIEQISYWLLNES 281
GL AL + +GD+RKA+N LQST+ + I +E V ++C P P+ IE + +N
Sbjct: 196 DGLDALTFIADGDLRKAVNCLQSTYAGLEVINKENVLHICD-IPSPERIENLLKHCVNSE 254
Query: 282 FADSFKRISEMKMRKGLALVDI 303
+ + I+ +++G DI
Sbjct: 255 WKKAHD-IAYSMIKEGHTPYDI 275
>UNIPROTKB|Q8I512 [details] [associations]
symbol:PFL2005w "Replication factor C subunit 4"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE014188
GO:GO:0017111 KO:K10755 SUPFAM:SSF48019 GO:GO:0005663
HOGENOM:HOG000224155 OMA:IQCLARI Pfam:PF08542 HSSP:Q8U4J3
RefSeq:XP_001350805.1 ProteinModelPortal:Q8I512
EnsemblProtists:PFL2005w:mRNA GeneID:811453 KEGG:pfa:PFL2005w
EuPathDB:PlasmoDB:PF3D7_1241700 ProtClustDB:CLSZ2733842
Uniprot:Q8I512
Length = 336
Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
Identities = 106/262 (40%), Positives = 162/262 (61%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRP+ L +V + +++T+ + + +P+LLL G PGTGKT++IL +A ++ G Q
Sbjct: 18 WIEKYRPEFLDEVVGNPFVINTLKSIITSGNMPNLLLAGAPGTGKTTSILCLASEMLGNQ 77
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+LELNASDDRGI+V+R +I+ FA + S K+++LDE D+MT AQ +LR
Sbjct: 78 AKKAVLELNASDDRGINVIRDRIKSFAK-EIISLP-PGKHKIIILDEVDSMTTAAQQSLR 135
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y+ TRFAL CNQ KII ALQSRC R+ L V +R+ + + E + T+
Sbjct: 136 RIMELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLSDDQVLKRILKICDLENIKYTD 195
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAV-YLCTGNPLPKDIEQISYWLLNES 281
GL AL + +GD+RKA+N LQST+ + I +E V ++C P P+ IE + +N
Sbjct: 196 DGLDALTFIADGDLRKAVNCLQSTYAGLEVINKENVLHICD-IPSPERIENLLKHCVNSE 254
Query: 282 FADSFKRISEMKMRKGLALVDI 303
+ + I+ +++G DI
Sbjct: 255 WKKAHD-IAYSMIKEGHTPYDI 275
>CGD|CAL0000922 [details] [associations]
symbol:RFC4 species:5476 "Candida albicans" [GO:0003689 "DNA
clamp loader activity" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0031390 "Ctf18 RFC-like
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 CGD:CAL0000922
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:AACQ01000032 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
HOGENOM:HOG000224155 Pfam:PF08542 RefSeq:XP_719417.1
ProteinModelPortal:Q5ACI4 SMR:Q5ACI4 STRING:Q5ACI4 GeneID:3638994
KEGG:cal:CaO19.7658 Uniprot:Q5ACI4
Length = 323
Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
Identities = 109/265 (41%), Positives = 154/265 (58%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+ L D+ + + V+ + + + +P++++ G PG GKT++I +A +L G
Sbjct: 10 PWVEKYRPKKLEDIVGNEETVERLKLIVQDGNMPNMIISGLPGIGKTTSIHCLAYELLGD 69
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQF 159
+ YH +ELNASDDRGIDVVR +I+ FA T+ S G + K+++LDEAD+MT AQ
Sbjct: 70 EHYHQATMELNASDDRGIDVVRNKIKQFAQTKISLPPGRQ---KIIILDEADSMTPGAQQ 126
Query: 160 ALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLD 219
ALRR IE Y+ TRFA CNQ +KII LQSRC R+ L V RL +I+ E +
Sbjct: 127 ALRRTIEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNRLSDEEVLARLLEIIKMEDVK 186
Query: 220 VTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLN 279
GL AL+ GDMR+A+N LQST + + V+ P P I+ I L
Sbjct: 187 YNTEGLQALIFTAEGDMRQAINNLQSTVAGFGFVNDVNVFKIVDQPHPLVIQSILLSCLK 246
Query: 280 ESFADSFKRISEMKMRKGLALVDIV 304
+ D + + KG + +DIV
Sbjct: 247 DKDIDKALGLLDGLWYKGYSAIDIV 271
>SGD|S000003829 [details] [associations]
symbol:RFC2 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031391 "Elg1 RFC-like complex"
evidence=IPI] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=TAS]
[GO:0006272 "leading strand elongation" evidence=IDA] [GO:0017076
"purine nucleotide binding" evidence=ISS] [GO:0000075 "cell cycle
checkpoint" evidence=IMP] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0007062 "sister chromatid cohesion"
evidence=IPI] [GO:0003689 "DNA clamp loader activity" evidence=IDA]
[GO:0031390 "Ctf18 RFC-like complex" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 SGD:S000003829
GO:GO:0005524 GO:GO:0005634 EMBL:BK006943 GO:GO:0003677
GO:GO:0006298 EMBL:L47993 GO:GO:0017111 GO:GO:0017076 KO:K06883
RefSeq:NP_012602.3 GeneID:853531 KEGG:sce:YJR068W KO:K10755
eggNOG:COG0470 GO:GO:0000075 GO:GO:0031390 GO:GO:0007062
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
RefSeq:NP_012606.3 GeneID:853535 KEGG:sce:YJR072C PDB:1SXJ
PDBsum:1SXJ GO:GO:0031389 Pfam:PF08542 HOGENOM:HOG000224154
OrthoDB:EOG4ZCXDF EMBL:D28499 EMBL:U26028 EMBL:Z49568 EMBL:AY557920
PIR:S45531 ProteinModelPortal:P40348 SMR:P40348 DIP:DIP-2528N
IntAct:P40348 MINT:MINT-480404 STRING:P40348 PaxDb:P40348
PeptideAtlas:P40348 EnsemblFungi:YJR068W CYGD:YJR068w
GeneTree:ENSGT00550000074917 OMA:SMTADAQ EvolutionaryTrace:P40348
NextBio:974230 Genevestigator:P40348 GermOnline:YJR068W
Uniprot:P40348
Length = 353
Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
Identities = 111/281 (39%), Positives = 162/281 (57%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L +V A V + + LPH+L YGPPGTGKTSTILA+ ++LYG
Sbjct: 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP 85
Query: 102 QY-HNMILELNASDDRGIDVVRQQIQDFA-------STQSFSFGVKASVKLVLLDEADAM 153
+ ILELNASD+RGI +VR+++++FA S K+++LDEAD+M
Sbjct: 86 DLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM 145
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
T DAQ ALRR +E Y+ TRF LICN V +II L SRC++FRF L+ + +RL+ +
Sbjct: 146 TADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFIS 205
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQ------QITEEAVYLCTGNPLP 267
E E + +G L ++ + GD+R+ + +LQS +Q IT V G +P
Sbjct: 206 EQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG-VVP 264
Query: 268 KDIE-QISYWLLNESFADSFKRISEMKMRKGLALVDIVREV 307
DI +I + + F D K+ M+ G + +V ++
Sbjct: 265 HDILIEIVEKVKSGDF-DEIKKYVNTFMKSGWSAASVVNQL 304
>WB|WBGene00004340 [details] [associations]
symbol:rfc-4 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0045750 "positive regulation of S
phase of mitotic cell cycle" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0006260
GO:GO:0000003 GO:GO:0000910 GO:GO:0017111 GO:GO:0045750 KO:K10755
eggNOG:COG0470 EMBL:FO080392 HOGENOM:HOG000224154
GeneTree:ENSGT00550000074917 PIR:T16219 RefSeq:NP_498521.1
ProteinModelPortal:P53016 SMR:P53016 DIP:DIP-24293N IntAct:P53016
MINT:MINT-226482 STRING:P53016 PaxDb:P53016 EnsemblMetazoa:F31E3.3
GeneID:175976 KEGG:cel:CELE_F31E3.3 UCSC:F31E3.3 CTD:175976
WormBase:F31E3.3 InParanoid:P53016 OMA:CDLENNL NextBio:890574
Uniprot:P53016
Length = 334
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 98/212 (46%), Positives = 139/212 (65%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
K W EKYRP++L D+A ++V + LPHLL YGPPGTGKTS LA R+L
Sbjct: 13 KVLTWTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCRQL 72
Query: 99 YGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASV---KLVLLDEADAMT 154
+ +H+ +L+LNASD+RGI VVRQ+IQ F S S + V K+++LDE DAMT
Sbjct: 73 FPKNIFHDRVLDLNASDERGIAVVRQKIQSF-SKSSLGHSHREDVLKLKIIILDEVDAMT 131
Query: 155 KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHV-TERLKHVI 213
++AQ A+RRVIE ++K TRF LICN V+++IP + SRC +FRF L P + +RL+ +
Sbjct: 132 REAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSL-PAEIQVQRLRTIC 190
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
+AEG +++ L ++ GD+R+A+ LQS
Sbjct: 191 DAEGTPMSDDELKQVMEYSEGDLRRAVCTLQS 222
>UNIPROTKB|P53016 [details] [associations]
symbol:rfc-4 "Replication factor C subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0006260 GO:GO:0000003 GO:GO:0000910
GO:GO:0017111 GO:GO:0045750 KO:K10755 eggNOG:COG0470 EMBL:FO080392
HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917 PIR:T16219
RefSeq:NP_498521.1 ProteinModelPortal:P53016 SMR:P53016
DIP:DIP-24293N IntAct:P53016 MINT:MINT-226482 STRING:P53016
PaxDb:P53016 EnsemblMetazoa:F31E3.3 GeneID:175976
KEGG:cel:CELE_F31E3.3 UCSC:F31E3.3 CTD:175976 WormBase:F31E3.3
InParanoid:P53016 OMA:CDLENNL NextBio:890574 Uniprot:P53016
Length = 334
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 98/212 (46%), Positives = 139/212 (65%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
K W EKYRP++L D+A ++V + LPHLL YGPPGTGKTS LA R+L
Sbjct: 13 KVLTWTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCRQL 72
Query: 99 YGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASV---KLVLLDEADAMT 154
+ +H+ +L+LNASD+RGI VVRQ+IQ F S S + V K+++LDE DAMT
Sbjct: 73 FPKNIFHDRVLDLNASDERGIAVVRQKIQSF-SKSSLGHSHREDVLKLKIIILDEVDAMT 131
Query: 155 KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHV-TERLKHVI 213
++AQ A+RRVIE ++K TRF LICN V+++IP + SRC +FRF L P + +RL+ +
Sbjct: 132 REAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSL-PAEIQVQRLRTIC 190
Query: 214 EAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
+AEG +++ L ++ GD+R+A+ LQS
Sbjct: 191 DAEGTPMSDDELKQVMEYSEGDLRRAVCTLQS 222
>CGD|CAL0002015 [details] [associations]
symbol:RFC2 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA] [GO:0031390 "Ctf18 RFC-like complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0031391 "Elg1
RFC-like complex" evidence=IEA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0033314 "mitotic DNA replication checkpoint"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0006270
"DNA replication initiation" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 CGD:CAL0002015
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:AACQ01000024 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224154 RefSeq:XP_720328.1
RefSeq:XP_888712.1 ProteinModelPortal:Q5AFN3 SMR:Q5AFN3
STRING:Q5AFN3 GeneID:3637939 GeneID:3703993 KEGG:cal:CaO19.7035
KEGG:cal:CaO19_7035 Uniprot:Q5AFN3
Length = 363
Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
Identities = 101/225 (44%), Positives = 144/225 (64%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
+PWVEKYRP+SL DV++ + + + LPH+L YGPPGTGKTSTILA+A++LYG
Sbjct: 24 TPWVEKYRPKSLNDVSSQEHTIKVLTQTIKSGNLPHMLFYGPPGTGKTSTILALAKELYG 83
Query: 101 AQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASV--------KLVLLDEAD 151
Y + +LELNASD+RGI +VR++I++FA + S K + K+++LDEAD
Sbjct: 84 PNLYKSRVLELNASDERGISIVREKIKNFARL-TISNPTKEDLQNYPCPPYKIIILDEAD 142
Query: 152 AMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKH 211
+MT DAQ ALRR +E Y TRF LICN + +II + SRC++FRF L + RLK+
Sbjct: 143 SMTNDAQSALRRTMENYAGITRFVLICNYITRIIDPITSRCSKFRFKLLNNENAQLRLKY 202
Query: 212 VIEAEGLDV-TEGG----LAALVRLCNGDMRKALNILQSTHMASQ 251
+ + E L +E + L+++ GD+RKA+ LQS S+
Sbjct: 203 IGQQENLRFESENNEHQVIQELLKISGGDLRKAITYLQSAAKLSE 247
>GENEDB_PFALCIPARUM|PFB0840w [details] [associations]
symbol:PFB0840w "replication factor C, subunit
2" species:5833 "Plasmodium falciparum" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 EMBL:AE001362 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 HOGENOM:HOG000224154 HSSP:Q8U4J3
PIR:H71604 RefSeq:XP_001349685.1 ProteinModelPortal:O96260
PRIDE:O96260 EnsemblProtists:PFB0840w:mRNA GeneID:812767
KEGG:pfa:PFB0840w EuPathDB:PlasmoDB:PF3D7_0218000 OMA:DPIFSRC
ProtClustDB:CLSZ2432483 Uniprot:O96260
Length = 330
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 100/237 (42%), Positives = 149/237 (62%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+ L D+ + V + + +PHL+ +GPPGTGKTS I A+A +L+G
Sbjct: 5 PWVEKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFGK 64
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFA-------STQSFSFGVKASVKLVLLDEADAM 153
+ +LELNASDDRGI+VVR++I+ + S + V S KLV+LDEAD M
Sbjct: 65 ENISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLPSWKLVVLDEADMM 124
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT-ERLKHV 212
T+DAQ ALRR+IE Y+ TRF LICN ++KI + SRC+ +RF + P+++ E+L ++
Sbjct: 125 TEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSI-PINIKKEKLLYI 183
Query: 213 IEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKD 269
+ E +D+ + L ++ GD+R+A++ILQ + +IT +V +G LP D
Sbjct: 184 CQNENIDIVDDALEKIIETTEGDLRRAVSILQLCSCINTKITLNSVLDVSG--LPSD 238
>UNIPROTKB|O96260 [details] [associations]
symbol:PFB0840w "Replication factor C, subunit 2"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 EMBL:AE001362 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 HOGENOM:HOG000224154 HSSP:Q8U4J3
PIR:H71604 RefSeq:XP_001349685.1 ProteinModelPortal:O96260
PRIDE:O96260 EnsemblProtists:PFB0840w:mRNA GeneID:812767
KEGG:pfa:PFB0840w EuPathDB:PlasmoDB:PF3D7_0218000 OMA:DPIFSRC
ProtClustDB:CLSZ2432483 Uniprot:O96260
Length = 330
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 100/237 (42%), Positives = 149/237 (62%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP+ L D+ + V + + +PHL+ +GPPGTGKTS I A+A +L+G
Sbjct: 5 PWVEKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFGK 64
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFA-------STQSFSFGVKASVKLVLLDEADAM 153
+ +LELNASDDRGI+VVR++I+ + S + V S KLV+LDEAD M
Sbjct: 65 ENISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLPSWKLVVLDEADMM 124
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT-ERLKHV 212
T+DAQ ALRR+IE Y+ TRF LICN ++KI + SRC+ +RF + P+++ E+L ++
Sbjct: 125 TEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSI-PINIKKEKLLYI 183
Query: 213 IEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKD 269
+ E +D+ + L ++ GD+R+A++ILQ + +IT +V +G LP D
Sbjct: 184 CQNENIDIVDDALEKIIETTEGDLRRAVSILQLCSCINTKITLNSVLDVSG--LPSD 238
>UNIPROTKB|I3LHX6 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 GeneTree:ENSGT00550000075050 OMA:IQCLARI Pfam:PF08542
EMBL:FP340223 Ensembl:ENSSSCT00000028815 Uniprot:I3LHX6
Length = 295
Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
Identities = 98/237 (41%), Positives = 145/237 (61%)
Query: 71 ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAS 130
E +P++++ GPPGTGKT++IL +AR L G + +LELNAS+DRGIDVVR +I+ FA
Sbjct: 7 EGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQ 66
Query: 131 TQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQS 190
Q + K K+++LDEAD+MT AQ ALRR +E Y+K TRFAL CN +KII +QS
Sbjct: 67 -QKVTLP-KGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQS 124
Query: 191 RCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS 250
RC R+ L + RL +VIE E + T+ GL A++ GDMR+ALN LQST
Sbjct: 125 RCAVLRYTKLTDAQILARLLNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGF 184
Query: 251 QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREV 307
I E V+ P P ++++ ++ + +++K ++ + G + DI+ +
Sbjct: 185 GFINSENVFKVCDEPHPLLVKEMIQHCVSANIDEAYKILAHL-WHLGYSPEDIIGNI 240
>UNIPROTKB|C9J8M3 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 EMBL:AC112907 HOGENOM:HOG000224154
HGNC:HGNC:9972 ChiTaRS:RFC4 OrthoDB:EOG4Q58PN IPI:IPI00792595
ProteinModelPortal:C9J8M3 SMR:C9J8M3 STRING:C9J8M3
Ensembl:ENST00000418288 ArrayExpress:C9J8M3 Bgee:C9J8M3
Uniprot:C9J8M3
Length = 214
Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
Identities = 93/183 (50%), Positives = 123/183 (67%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG K PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 29 SGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 88
Query: 92 LAVARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFAS---TQSFSFGVKAS-VKLVL 146
LA AR+L+G + + +LELNASD+RGI VVR+++++FA + S S G K+V+
Sbjct: 89 LAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVI 148
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L SRC++FRF PL
Sbjct: 149 LDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQ 208
Query: 207 ERL 209
+RL
Sbjct: 209 QRL 211
>RGD|1593197 [details] [associations]
symbol:LOC367042 "similar to Activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit) (A1 37 kDa subunit) (RF-C 37
kDa subunit) (RFC37)" species:10116 "Rattus norvegicus" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1593197
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000074917
OrthoDB:EOG4Q58PN IPI:IPI00780490 Ensembl:ENSRNOT00000060753
Uniprot:D4ADU1
Length = 346
Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
Identities = 112/274 (40%), Positives = 157/274 (57%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
+K PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTILA AR+
Sbjct: 35 VKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARE 94
Query: 98 LYG-AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKA-SVKLVLLDEADAMTK 155
L+G A + +LELNASD+RGI V+ Q + S S G S K V+LDEAD+MT
Sbjct: 95 LFGPALFRLRVLELNASDERGIQKVKNFAQ-LTVSGSRSDGKPCPSFKTVILDEADSMTS 153
Query: 156 DAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA 215
A+ ALR+ +EK +K TRF L CN V++II L SR ++F F PL +RL + E
Sbjct: 154 AAR-ALRQTMEKESKTTRFCLFCNYVSRIIEPLTSRRSKFCFTPLSDKIQQKRLLGIAEK 212
Query: 216 EGLDVTEGGLAALVRLCNGDMRKALNILQS-THMASQQITEEAVYLCTGNPLPK-DIEQI 273
E + + + LV + GD+RKA+ +LQS T + T E V P IE I
Sbjct: 213 ENVKLGDD----LVTISEGDLRKAIPLLQSATRPTGGKETPEDVITDIAGVTPAATIEGI 268
Query: 274 SYWLLNESFADSFKRISEMKMRKGLALVDIVREV 307
++ SF D + + + + +G A +V E+
Sbjct: 269 ----VSGSF-DKLEAVVKNLIDEGHAATGLVNEL 297
>POMBASE|SPBC83.14c [details] [associations]
symbol:rfc5 "DNA replication factor C complex subunit
Rfc5 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=IC] [GO:0003689 "DNA clamp
loader activity" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006272 "leading strand
elongation" evidence=ISO] [GO:0006281 "DNA repair" evidence=ISO]
[GO:0031389 "Rad17 RFC-like complex" evidence=TAS] [GO:0031390
"Ctf18 RFC-like complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like
complex" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] InterPro:IPR008921 InterPro:IPR013748
PomBase:SPBC83.14c GO:GO:0005829 EMBL:CU329671 GO:GO:0006281
GenomeReviews:CU329671_GR GO:GO:0000790 GO:GO:0043596 KO:K10756
eggNOG:COG0470 GO:GO:0003689 GO:GO:0031390 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 HOGENOM:HOG000224153 OMA:TRIMCLL PIR:T40703
RefSeq:NP_595646.1 ProteinModelPortal:O94697 STRING:O94697
EnsemblFungi:SPBC83.14c.1 GeneID:2540215 KEGG:spo:SPBC83.14c
OrthoDB:EOG4R273P NextBio:20801347 Uniprot:O94697
Length = 358
Score = 219 (82.2 bits), Expect = 2.8e-30, Sum P(2) = 2.8e-30
Identities = 67/216 (31%), Positives = 109/216 (50%)
Query: 79 LYGPPGTGKTS----TILAVARKLYGAQYHNMI--LELNASDDRGID-VVRQQI-QDFAS 130
LYGP G+ K T L + K + + LE+ SD D V+ Q++ +D A
Sbjct: 58 LYGP-GSEKLKIDQRTFLTPSSKKLQINIVSSLHHLEITPSDVGNYDRVIMQELLKDVAQ 116
Query: 131 TQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQS 190
+ K K+V+++ AD +T+DAQ ALRR +EKY+ N R LI N +KII ++S
Sbjct: 117 SAQVDLQAKKIFKVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRS 176
Query: 191 RCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS 250
R R A P + + ++ A+GL+ + L + C+ ++RKA+ +L++ H S
Sbjct: 177 RTLMVRVAAPTPEEIILVMSKILTAQGLEAPDSLLNNIANNCDRNLRKAILLLETVHAKS 236
Query: 251 ---QQITEEAVYLCTGNPLPK---DIEQISYWLLNE 280
+Q+ + L PLP I+Q+ +L E
Sbjct: 237 PGNKQLIDTGAQL----PLPDWQTFIQQVGDSMLQE 268
Score = 156 (60.0 bits), Expect = 2.8e-30, Sum P(2) = 2.8e-30
Identities = 25/58 (43%), Positives = 42/58 (72%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
W+++YRP++LA + H+ + + + L+S N PHLL+YGP G GK + ++A+ R+LYG
Sbjct: 3 WLDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYG 60
>UNIPROTKB|C9JTT7 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 EMBL:AC112907 HOGENOM:HOG000224154
HGNC:HGNC:9972 ChiTaRS:RFC4 IPI:IPI00925397
ProteinModelPortal:C9JTT7 SMR:C9JTT7 STRING:C9JTT7
Ensembl:ENST00000447345 ArrayExpress:C9JTT7 Bgee:C9JTT7
Uniprot:C9JTT7
Length = 167
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 69/139 (49%), Positives = 93/139 (66%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG K PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 29 SGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 88
Query: 92 LAVARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFAS---TQSFSFGVKAS-VKLVL 146
LA AR+L+G + + +LELNASD+RGI VVR+++++FA + S S G K+V+
Sbjct: 89 LAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVI 148
Query: 147 LDEADAMTKDAQFALRRVI 165
LDEAD+MT AQ ALRR +
Sbjct: 149 LDEADSMTSAAQAALRRTM 167
>RGD|1306832 [details] [associations]
symbol:Rfc3 "replication factor C (activator 1) 3" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA;ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005663 "DNA replication factor C complex"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA;ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0016887 "ATPase activity"
evidence=IEA;ISO] [GO:0046683 "response to organophosphorus"
evidence=IEA;ISO] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 RGD:1306832 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 KO:K10756 GO:GO:0046683
eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 CTD:5983
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153
HOVERGEN:HBG040509 OMA:TRIMCLL OrthoDB:EOG4T4CVP EMBL:BC088281
EMBL:CH474108 IPI:IPI00189913 RefSeq:NP_001009629.1 UniGene:Rn.3711
STRING:Q5M830 Ensembl:ENSRNOT00000001444 GeneID:288414
KEGG:rno:288414 UCSC:RGD:1306832 InParanoid:Q5M830 NextBio:628070
Genevestigator:Q5M830 Uniprot:Q5M830
Length = 356
Score = 208 (78.3 bits), Expect = 3.2e-27, Sum P(2) = 3.2e-27
Identities = 53/159 (33%), Positives = 80/159 (50%)
Query: 101 AQYHNMILELNASDDRGID--VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQ 158
+ YH LE+N SD D V+++ ++ A +Q + K+VLL E D +TKDAQ
Sbjct: 89 SNYH---LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQRDFKVVLLTEVDKLTKDAQ 145
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVH-VTERLKHVIEAEG 217
ALRR +EKY R L CN +K+IP ++SRC R P + + L V + EG
Sbjct: 146 HALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAIR-VPAPSIEDICSVLSTVCKKEG 204
Query: 218 LDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEE 256
L + L ++RKAL + ++ + TE+
Sbjct: 205 LALPSKLARRLAEKSCRNLRKALLMCEACRVQQYPFTED 243
Score = 146 (56.5 bits), Expect = 3.2e-27, Sum P(2) = 3.2e-27
Identities = 28/69 (40%), Positives = 40/69 (57%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
S WV+KYRP SLA + H++ + L PHLL+YGP G GK + I+ + R+LYG
Sbjct: 2 SLWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYG 61
Query: 101 AQYHNMILE 109
+ +E
Sbjct: 62 VGVEKLRIE 70
Score = 45 (20.9 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVY 259
E L H I E + +G L+ L+ C+G ++ + + + + Q+ +A+Y
Sbjct: 280 ELLTHCIPPEV--IMKGLLSELLHNCDGQLKGEVAQMAAYYEHRLQLGSKAIY 330
>UNIPROTKB|F1P3C0 [details] [associations]
symbol:RFC3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0046683 "response
to organophosphorus" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 GO:GO:0046683
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
OMA:TRIMCLL EMBL:AADN02005263 IPI:IPI00593478 PRIDE:F1P3C0
Ensembl:ENSGALT00000027564 Uniprot:F1P3C0
Length = 356
Score = 207 (77.9 bits), Expect = 7.3e-27, Sum P(2) = 7.3e-27
Identities = 57/150 (38%), Positives = 81/150 (54%)
Query: 101 AQYHNMILELNASDDRGID--VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQ 158
+ YH LE+N SD D V+++ ++ A +Q + K+VLL E D +TKDAQ
Sbjct: 89 SNYH---LEVNPSDAGNNDRVVIQELLKTVAQSQQLETSTQRDFKVVLLTEVDKLTKDAQ 145
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRF-AP-LEPV-HVTERLKHVIEA 215
ALRR +EKY R L CN ++KII +QSRC R AP +E + HV L V +
Sbjct: 146 HALRRTMEKYMATCRLILCCNSISKIIGPIQSRCLSVRVPAPSIEDICHV---LSSVCKK 202
Query: 216 EGLDVTEGGLAALVRLCNGDMRKALNILQS 245
EGL++ L ++RKAL + +S
Sbjct: 203 EGLNLPPELAQRLAEKSGRNLRKALLMCES 232
Score = 144 (55.7 bits), Expect = 7.3e-27, Sum P(2) = 7.3e-27
Identities = 28/69 (40%), Positives = 41/69 (59%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
S WV+KYRP +L+ + HR+ + L PHLL+YGP G GK + I+ + R+LYG
Sbjct: 2 SLWVDKYRPSALSRLDFHREQAAQLRSLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYG 61
Query: 101 AQYHNMILE 109
A + +E
Sbjct: 62 AGVEKLRIE 70
Score = 44 (20.5 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 13/53 (24%), Positives = 26/53 (49%)
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVY 259
E L H I E + +G L L+ C+G ++ + + + + Q+ +A+Y
Sbjct: 280 ELLTHCIPPE--IIMKGLLTELLNNCDGQLKGEVAQMAAFYEHRLQLGSKAIY 330
>MGI|MGI:1916513 [details] [associations]
symbol:Rfc3 "replication factor C (activator 1) 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006260 "DNA
replication" evidence=ISO] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 MGI:MGI:1916513 GO:GO:0005634
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 KO:K10756
GO:GO:0046683 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 CTD:5983
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153
HOVERGEN:HBG040509 OMA:TRIMCLL OrthoDB:EOG4T4CVP EMBL:BC026795
IPI:IPI00665571 RefSeq:NP_081285.1 UniGene:Mm.12553
ProteinModelPortal:Q8R323 SMR:Q8R323 IntAct:Q8R323 STRING:Q8R323
PhosphoSite:Q8R323 PaxDb:Q8R323 PRIDE:Q8R323
Ensembl:ENSMUST00000038131 GeneID:69263 KEGG:mmu:69263
InParanoid:Q8R323 NextBio:328993 Bgee:Q8R323 CleanEx:MM_RFC3
Genevestigator:Q8R323 GermOnline:ENSMUSG00000033970 Uniprot:Q8R323
Length = 356
Score = 206 (77.6 bits), Expect = 8.0e-27, Sum P(2) = 8.0e-27
Identities = 53/159 (33%), Positives = 79/159 (49%)
Query: 101 AQYHNMILELNASDDRGID--VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQ 158
+ YH LE+N SD D V+++ ++ A +Q + K+VLL E D +TKDAQ
Sbjct: 89 SNYH---LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQRDFKVVLLTEVDKLTKDAQ 145
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVH-VTERLKHVIEAEG 217
ALRR +EKY R L CN +K+IP ++SRC R P + + L V EG
Sbjct: 146 HALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVR-VPAPSIEDICSVLSTVCRKEG 204
Query: 218 LDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEE 256
L + L ++RKAL + ++ + TE+
Sbjct: 205 LALPSTLARRLAEKSCRNLRKALLMCEACRVQQYPFTED 243
Score = 145 (56.1 bits), Expect = 8.0e-27, Sum P(2) = 8.0e-27
Identities = 28/69 (40%), Positives = 40/69 (57%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
S WV+KYRP SLA + H++ + L PHLL+YGP G GK + I+ + R+LYG
Sbjct: 2 SLWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYG 61
Query: 101 AQYHNMILE 109
+ +E
Sbjct: 62 IGVEKLRIE 70
Score = 45 (20.9 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVY 259
E L H I E + +G L+ L+ C+G ++ + + + + Q+ +A+Y
Sbjct: 280 ELLTHCIPPE--IIMKGLLSELLHNCDGQLKGEVAQMAAYYEHRLQLGSKAIY 330
>UNIPROTKB|E2R7L0 [details] [associations]
symbol:RFC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046683 "response to organophosphorus"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0016887 KO:K10756 GO:GO:0046683 SUPFAM:SSF48019 Pfam:PF08542
CTD:5983 GeneTree:ENSGT00550000075006 OMA:TRIMCLL EMBL:AAEX03014212
RefSeq:XP_534500.3 ProteinModelPortal:E2R7L0
Ensembl:ENSCAFT00000010156 GeneID:477308 KEGG:cfa:477308
NextBio:20852824 Uniprot:E2R7L0
Length = 356
Score = 207 (77.9 bits), Expect = 2.4e-26, Sum P(2) = 2.4e-26
Identities = 63/173 (36%), Positives = 89/173 (51%)
Query: 101 AQYHNMILELNASDDRGID--VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQ 158
+ YH LE+N SD D V+++ ++ A +Q + K+VLL E D +TKDAQ
Sbjct: 89 SNYH---LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQ 145
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRF-AP-LEPV-HVTERLKHVIEA 215
ALRR +EKY R L CN +K+IP ++SRC R AP +E + HV L V +
Sbjct: 146 HALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHV---LSTVCKK 202
Query: 216 EGLDVTEGGLAALVRLCNGDMRKAL------NILQSTHMASQQI--TEEAVYL 260
EGL++ L ++RKAL + Q A Q+I T+ VYL
Sbjct: 203 EGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVYL 255
Score = 139 (54.0 bits), Expect = 2.4e-26, Sum P(2) = 2.4e-26
Identities = 27/69 (39%), Positives = 39/69 (56%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
S WV+KYRP SL + H++ + L PHLL+YGP G GK + I+ + R+LYG
Sbjct: 2 SLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYG 61
Query: 101 AQYHNMILE 109
+ +E
Sbjct: 62 VGVEKLRIE 70
Score = 45 (20.9 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVY 259
E L H I E + +G L+ L+ C+G ++ + + + + Q+ +A+Y
Sbjct: 280 ELLTHCIPPE--IIMKGLLSELLHNCDGQLKGEVAQMAAYYEHRLQLGSKAIY 330
>UNIPROTKB|P40938 [details] [associations]
symbol:RFC3 "Replication factor C subunit 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IDA;TAS]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006260 "DNA replication"
evidence=IDA;TAS] [GO:0003689 "DNA clamp loader activity"
evidence=TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0046683 "response to organophosphorus" evidence=IEP]
[GO:0000075 "cell cycle checkpoint" evidence=TAS] [GO:0000084 "S
phase of mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic
cell cycle" evidence=TAS] [GO:0000722 "telomere maintenance via
recombination" evidence=TAS] [GO:0000723 "telomere maintenance"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271
"DNA strand elongation involved in DNA replication" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0006200 "ATP catabolic process"
evidence=IDA] Reactome:REACT_216 InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 EMBL:CH471075 KO:K10756 GO:GO:0017111 GO:GO:0046683
GO:GO:0000084 eggNOG:COG0470 GO:GO:0000075 GO:GO:0000722
GO:GO:0000731 Reactome:REACT_383 GO:GO:0006283 GO:GO:0003689
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 CTD:5983 HOGENOM:HOG000224153
HOVERGEN:HBG040509 OMA:TRIMCLL OrthoDB:EOG4T4CVP EMBL:L07541
EMBL:AF484446 EMBL:AL139081 EMBL:AL160394 EMBL:AL161891
EMBL:BC000149 EMBL:CX786577 IPI:IPI00031521 IPI:IPI00373882
PIR:T09573 RefSeq:NP_002906.1 RefSeq:NP_853536.2 UniGene:Hs.115474
ProteinModelPortal:P40938 SMR:P40938 DIP:DIP-36432N IntAct:P40938
MINT:MINT-3015032 STRING:P40938 PhosphoSite:P40938 DMDM:3915601
PaxDb:P40938 PeptideAtlas:P40938 PRIDE:P40938 DNASU:5983
Ensembl:ENST00000380071 Ensembl:ENST00000434425 GeneID:5983
KEGG:hsa:5983 UCSC:uc001uuz.3 GeneCards:GC13P034392 HGNC:HGNC:9971
HPA:HPA030149 MIM:600405 neXtProt:NX_P40938 PharmGKB:PA34340
InParanoid:P40938 PhylomeDB:P40938 ChiTaRS:RFC3 GenomeRNAi:5983
NextBio:23291 ArrayExpress:P40938 Bgee:P40938 CleanEx:HS_RFC3
Genevestigator:P40938 GermOnline:ENSG00000133119 Uniprot:P40938
Length = 356
Score = 207 (77.9 bits), Expect = 2.4e-26, Sum P(2) = 2.4e-26
Identities = 63/173 (36%), Positives = 89/173 (51%)
Query: 101 AQYHNMILELNASDDRGID--VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQ 158
+ YH LE+N SD D V+++ ++ A +Q + K+VLL E D +TKDAQ
Sbjct: 89 SNYH---LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQ 145
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRF-AP-LEPV-HVTERLKHVIEA 215
ALRR +EKY R L CN +K+IP ++SRC R AP +E + HV L V +
Sbjct: 146 HALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHV---LSTVCKK 202
Query: 216 EGLDVTEGGLAALVRLCNGDMRKAL------NILQSTHMASQQI--TEEAVYL 260
EGL++ L ++RKAL + Q A Q+I T+ VYL
Sbjct: 203 EGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVYL 255
Score = 139 (54.0 bits), Expect = 2.4e-26, Sum P(2) = 2.4e-26
Identities = 27/69 (39%), Positives = 39/69 (56%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
S WV+KYRP SL + H++ + L PHLL+YGP G GK + I+ + R+LYG
Sbjct: 2 SLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYG 61
Query: 101 AQYHNMILE 109
+ +E
Sbjct: 62 VGVEKLRIE 70
Score = 45 (20.9 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVY 259
E L H I E + +G L+ L+ C+G ++ + + + + Q+ +A+Y
Sbjct: 280 ELLTHCIPPE--IIMKGLLSELLHNCDGQLKGEVAQMAAYYEHRLQLGSKAIY 330
>UNIPROTKB|F1RSR4 [details] [associations]
symbol:RFC3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046683 "response to organophosphorus" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 GO:GO:0046683
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
OMA:TRIMCLL EMBL:AEMK01181220 EMBL:CU076062
Ensembl:ENSSSCT00000010246 Uniprot:F1RSR4
Length = 356
Score = 205 (77.2 bits), Expect = 3.2e-26, Sum P(2) = 3.2e-26
Identities = 56/159 (35%), Positives = 82/159 (51%)
Query: 101 AQYHNMILELNASDDRGID--VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQ 158
+ YH LE+N SD D V+++ ++ A +Q + K+VLL E D +TKDAQ
Sbjct: 89 SNYH---LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQKDFKVVLLTEVDKLTKDAQ 145
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRF-AP-LEPV-HVTERLKHVIEA 215
ALRR +EKY R L CN +K+IP ++SRC R AP +E + HV L V +
Sbjct: 146 HALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHV---LSTVCKK 202
Query: 216 EGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQIT 254
EGL + L ++RKAL + ++ + T
Sbjct: 203 EGLSLPSQLARKLAEKSCRNLRKALLMCEACRVQQYPFT 241
Score = 141 (54.7 bits), Expect = 3.2e-26, Sum P(2) = 3.2e-26
Identities = 27/69 (39%), Positives = 39/69 (56%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
S WV+KYRP SL + H++ + L PHLL+YGP G GK + I+ + R+LYG
Sbjct: 2 SLWVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYG 61
Query: 101 AQYHNMILE 109
+ +E
Sbjct: 62 VGVEKLRIE 70
Score = 45 (20.9 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVY 259
E L H I E + +G L+ L+ C+G ++ + + + + Q+ +A+Y
Sbjct: 280 ELLTHCIPPE--IIMKGLLSELLHNCDGQLKGEVAQMAAYYEHRLQLGSKAIY 330
>ZFIN|ZDB-GENE-020809-3 [details] [associations]
symbol:rfc3 "replication factor C (activator 1) 3"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 ZFIN:ZDB-GENE-020809-3 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111 SUPFAM:SSF48019
Pfam:PF08542 CTD:5983 HOVERGEN:HBG040509 HSSP:Q8U4J3 EMBL:BC042327
IPI:IPI00734824 RefSeq:NP_958865.1 UniGene:Dr.13362
ProteinModelPortal:Q8AW06 STRING:Q8AW06 PRIDE:Q8AW06 GeneID:259256
KEGG:dre:259256 InParanoid:Q8AW06 NextBio:20804713
ArrayExpress:Q8AW06 Bgee:Q8AW06 Uniprot:Q8AW06
Length = 356
Score = 197 (74.4 bits), Expect = 3.4e-26, Sum P(2) = 3.4e-26
Identities = 56/144 (38%), Positives = 76/144 (52%)
Query: 101 AQYHNMILELNASDDRGID--VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQ 158
+ YH LE+N SD D V+++ I+ A +Q + K+VLL E D +TKDAQ
Sbjct: 89 SNYH---LEVNPSDAGNSDRVVIQELIKTVAQSQQIQSSAQREFKVVLLTEVDRLTKDAQ 145
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVH-VTERLKHVIEAEG 217
ALRR +EKY R L CN +K+I ++SRC R PL V V L V EG
Sbjct: 146 HALRRTMEKYMATCRLILCCNSTSKVIAPIRSRCLAVR-VPLPSVEEVCSVLSGVCRKEG 204
Query: 218 LDVTEGGLAALVRLCNG-DMRKAL 240
L + LA + +G ++RKAL
Sbjct: 205 L-LLPPELAKQIAEKSGRNLRKAL 227
Score = 152 (58.6 bits), Expect = 3.4e-26, Sum P(2) = 3.4e-26
Identities = 29/69 (42%), Positives = 42/69 (60%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
S WV+KYRP SLA + H++ + + L PHLL+YGP G GK + I+ + R+LYG
Sbjct: 2 SLWVDKYRPTSLAKLDYHKEQANQLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYG 61
Query: 101 AQYHNMILE 109
A + +E
Sbjct: 62 AGVEKLRIE 70
Score = 41 (19.5 bits), Expect = 9.6e-09, Sum P(2) = 9.6e-09
Identities = 12/53 (22%), Positives = 26/53 (49%)
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVY 259
E L H I E + +G + L+ C+G ++ + + + + Q+ +A+Y
Sbjct: 280 ELLTHCISPEV--IMKGLVTELLSNCDGHLKAEVAQMAAYYEHRLQLGNKAIY 330
>WB|WBGene00004339 [details] [associations]
symbol:rfc-3 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003677 GO:GO:0006260 GO:GO:0040011
GO:GO:0006974 GO:GO:0040035 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
HOGENOM:HOG000224153 OMA:TRIMCLL EMBL:Z70307 HSSP:Q8U4J3 PIR:T19856
RefSeq:NP_502517.1 ProteinModelPortal:Q18547 SMR:Q18547
DIP:DIP-27479N IntAct:Q18547 MINT:MINT-228120 STRING:Q18547
PaxDb:Q18547 EnsemblMetazoa:C39E9.13.1 EnsemblMetazoa:C39E9.13.2
GeneID:178259 KEGG:cel:CELE_C39E9.13 UCSC:C39E9.13 CTD:178259
WormBase:C39E9.13 InParanoid:Q18547 NextBio:900398 Uniprot:Q18547
Length = 354
Score = 223 (83.6 bits), Expect = 4.1e-26, Sum P(2) = 4.1e-26
Identities = 61/197 (30%), Positives = 105/197 (53%)
Query: 101 AQYHNMILELNASDDRGID--VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQ 158
+ YH +E+ SD D VV+ +++ A T + S K+V+L EAD++T+DAQ
Sbjct: 91 SNYH---IEMTPSDVGIYDRVVVQDLVKEMAQTSQIESTSQRSFKVVVLCEADSLTRDAQ 147
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRF-APLEPVHVTERLKHVIEAEG 217
LRR +EKY N + L C +++II LQSRC AP + VT+ L+ VIE E
Sbjct: 148 HGLRRTMEKYANNCKIVLSCESLSRIIEPLQSRCIIINVPAPTDE-DVTKVLRKVIERES 206
Query: 218 LDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPK---DIEQIS 274
+ E L +V G++R+A+ + ++ M ++ E+V + P+P+ I++ +
Sbjct: 207 FLLPENVLQKIVEKSEGNLRRAILMTEALRMENESGVAESVVI----PVPEWEIYIQETA 262
Query: 275 YWLLNESFADSFKRISE 291
+L + +D ++ E
Sbjct: 263 RLILQKQSSDMLLKVRE 279
Score = 105 (42.0 bits), Expect = 4.1e-26, Sum P(2) = 4.1e-26
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 43 WVEKYRPQSLAD---VAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99
WV+KYRP+ L V H + + + + S + +PHLL GP G GK + I + R+LY
Sbjct: 4 WVDKYRPKDLLGKDGVDYHIEQANHL-KFLSADCMPHLLFCGPSGAGKKTRIKCLLRELY 62
Query: 100 G 100
G
Sbjct: 63 G 63
>UNIPROTKB|Q18547 [details] [associations]
symbol:rfc-3 "Protein RFC-3" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0009792 GO:GO:0040010
GO:GO:0003677 GO:GO:0006260 GO:GO:0040011 GO:GO:0006974
GO:GO:0040035 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
HOGENOM:HOG000224153 OMA:TRIMCLL EMBL:Z70307 HSSP:Q8U4J3 PIR:T19856
RefSeq:NP_502517.1 ProteinModelPortal:Q18547 SMR:Q18547
DIP:DIP-27479N IntAct:Q18547 MINT:MINT-228120 STRING:Q18547
PaxDb:Q18547 EnsemblMetazoa:C39E9.13.1 EnsemblMetazoa:C39E9.13.2
GeneID:178259 KEGG:cel:CELE_C39E9.13 UCSC:C39E9.13 CTD:178259
WormBase:C39E9.13 InParanoid:Q18547 NextBio:900398 Uniprot:Q18547
Length = 354
Score = 223 (83.6 bits), Expect = 4.1e-26, Sum P(2) = 4.1e-26
Identities = 61/197 (30%), Positives = 105/197 (53%)
Query: 101 AQYHNMILELNASDDRGID--VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQ 158
+ YH +E+ SD D VV+ +++ A T + S K+V+L EAD++T+DAQ
Sbjct: 91 SNYH---IEMTPSDVGIYDRVVVQDLVKEMAQTSQIESTSQRSFKVVVLCEADSLTRDAQ 147
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRF-APLEPVHVTERLKHVIEAEG 217
LRR +EKY N + L C +++II LQSRC AP + VT+ L+ VIE E
Sbjct: 148 HGLRRTMEKYANNCKIVLSCESLSRIIEPLQSRCIIINVPAPTDE-DVTKVLRKVIERES 206
Query: 218 LDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPK---DIEQIS 274
+ E L +V G++R+A+ + ++ M ++ E+V + P+P+ I++ +
Sbjct: 207 FLLPENVLQKIVEKSEGNLRRAILMTEALRMENESGVAESVVI----PVPEWEIYIQETA 262
Query: 275 YWLLNESFADSFKRISE 291
+L + +D ++ E
Sbjct: 263 RLILQKQSSDMLLKVRE 279
Score = 105 (42.0 bits), Expect = 4.1e-26, Sum P(2) = 4.1e-26
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 43 WVEKYRPQSLAD---VAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99
WV+KYRP+ L V H + + + + S + +PHLL GP G GK + I + R+LY
Sbjct: 4 WVDKYRPKDLLGKDGVDYHIEQANHL-KFLSADCMPHLLFCGPSGAGKKTRIKCLLRELY 62
Query: 100 G 100
G
Sbjct: 63 G 63
>FB|FBgn0028700 [details] [associations]
symbol:RfC38 "Replication factor C 38kD subunit" species:7227
"Drosophila melanogaster" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0003689 "DNA clamp loader activity" evidence=ISS]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 GO:GO:0022008
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 EMBL:AF160912 UniGene:Dm.19818
ProteinModelPortal:Q7KLW6 IntAct:Q7KLW6 STRING:Q7KLW6 PaxDb:Q7KLW6
PRIDE:Q7KLW6 FlyBase:FBgn0028700 InParanoid:Q7KLW6
OrthoDB:EOG4C2FS4 ArrayExpress:Q7KLW6 Bgee:Q7KLW6 Uniprot:Q7KLW6
Length = 395
Score = 196 (74.1 bits), Expect = 4.3e-25, Sum P(2) = 4.3e-25
Identities = 50/156 (32%), Positives = 78/156 (50%)
Query: 101 AQYHNMILELNASDDRGID--VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQ 158
+ YH LE+N SD D VV I+ A T + K++++ E D +TKDAQ
Sbjct: 128 SNYH---LEVNPSDAGMYDRTVVIDLIKQVAQTHQIEISGQREFKVIVISEGDELTKDAQ 184
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGL 218
ALRR +EKY R + N ++IIPA++SRC R A + L++ + EGL
Sbjct: 185 HALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPNETEIVSILQNTCKREGL 244
Query: 219 DVTEGGLAALVRLCNGDMRKALNILQSTHMASQQIT 254
+ +V ++R+AL +L++ +A T
Sbjct: 245 ALPVELAKRVVDKSERNLRRALLMLEAAKVAKAPFT 280
Score = 146 (56.5 bits), Expect = 4.3e-25, Sum P(2) = 4.3e-25
Identities = 23/59 (38%), Positives = 39/59 (66%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
WV+KYRP+ L+ + H+D + + L ++ PHL+ YGP G GK + I+ + R++YG+
Sbjct: 43 WVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGS 101
Score = 37 (18.1 bits), Expect = 9.9e-14, Sum P(2) = 9.9e-14
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 7 VSLMDFDEDENQNLK 21
+S +DF +D+ +NL+
Sbjct: 52 LSKLDFHKDQAENLR 66
>SGD|S000000291 [details] [associations]
symbol:RFC5 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0031390 "Ctf18
RFC-like complex" evidence=IPI] [GO:0003689 "DNA clamp loader
activity" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IMP;IPI] [GO:0006272 "leading strand elongation"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005663 "DNA
replication factor C complex" evidence=IDA;IMP] [GO:0006298
"mismatch repair" evidence=TAS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031389 "Rad17 RFC-like complex" evidence=IDA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IPI] [GO:0005634
"nucleus" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 SGD:S000000291 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 EMBL:BK006936 GO:GO:0006298 EMBL:X78993
RefSeq:NP_009644.3 GeneID:852383 KEGG:sce:YBR087W KO:K10756
GO:GO:0017111 eggNOG:COG0470 GO:GO:0031390 GO:GO:0007062
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
EMBL:Z35956 PDB:1SXJ PDBsum:1SXJ GO:GO:0031389 Pfam:PF08542
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153 OMA:TRIMCLL
OrthoDB:EOG4R273P EMBL:U26031 EMBL:AY693173 PIR:S48257
RefSeq:NP_009648.4 ProteinModelPortal:P38251 SMR:P38251
DIP:DIP-2531N IntAct:P38251 MINT:MINT-480383 STRING:P38251
PaxDb:P38251 PeptideAtlas:P38251 EnsemblFungi:YBR087W GeneID:852387
KEGG:sce:YBR090C CYGD:YBR087w EvolutionaryTrace:P38251
NextBio:971189 Genevestigator:P38251 GermOnline:YBR087W
Uniprot:P38251
Length = 354
Score = 190 (71.9 bits), Expect = 6.1e-24, Sum P(2) = 6.1e-24
Identities = 48/151 (31%), Positives = 85/151 (56%)
Query: 103 YHNMILELNASDDRGID--VVRQQIQDFASTQSFSF-----GVKASVKLVLLDEADAMTK 155
YH LE+ SD D V+++ +++ A + F G+ K V+++EA+++TK
Sbjct: 92 YH---LEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK 148
Query: 156 DAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA 215
DAQ ALRR +EKY+KN R ++C+ ++ II ++SRC R ++ L V+
Sbjct: 149 DAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIRCPAPSDSEISTILSDVVTN 208
Query: 216 EGLDV-TEGGLAALVRLCNGDMRKALNILQS 245
E + + T+ L + + NG++R +L +L+S
Sbjct: 209 ERIQLETKDILKRIAQASNGNLRVSLLMLES 239
Score = 140 (54.3 bits), Expect = 6.1e-24, Sum P(2) = 6.1e-24
Identities = 26/71 (36%), Positives = 47/71 (66%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENR-LPHLLLYGPPGTGKTSTILAVARKLY 99
S WV+KYRP+SL ++ + ++ + + L+ + R LPHLLLYGP GTGK + +A+ ++
Sbjct: 2 SLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIF 61
Query: 100 GAQYHNMILEL 110
G + + +++
Sbjct: 62 GPGVYRLKIDV 72
>DICTYBASE|DDB_G0293702 [details] [associations]
symbol:rfc3 "replication factor C subunit 3"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003689 "DNA
clamp loader activity" evidence=ISS] [GO:0031391 "Elg1 RFC-like
complex" evidence=ISS] [GO:0031389 "Rad17 RFC-like complex"
evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
[GO:0006272 "leading strand elongation" evidence=ISS] [GO:0005663
"DNA replication factor C complex" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0293702 GO:GO:0005634
GenomeReviews:CM000155_GR GO:GO:0000166 GO:GO:0003677 GO:GO:0006298
KO:K10756 GO:GO:0017111 EMBL:AAFI02000218 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 Pfam:PF08542 OMA:TRIMCLL RefSeq:XP_628996.1
HSSP:P38251 ProteinModelPortal:Q54BN3 STRING:Q54BN3 PRIDE:Q54BN3
EnsemblProtists:DDB0232232 GeneID:8629280 KEGG:ddi:DDB_G0293702
ProtClustDB:CLSZ2429230 Uniprot:Q54BN3
Length = 347
Score = 181 (68.8 bits), Expect = 5.5e-23, Sum P(2) = 5.5e-23
Identities = 45/147 (30%), Positives = 74/147 (50%)
Query: 101 AQYHNMILELNASDDRGID--VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQ 158
+ YH +E+N + D V++ I++ A + G + K+V+L+E D ++KDAQ
Sbjct: 89 SHYH---IEINPGEAGSYDRVVIQTIIKEIAQSPPIDSGSLGAFKIVILNEVDKLSKDAQ 145
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGL 218
ALRR +EKY R L C+ K+I ++SRC R + + L V AE
Sbjct: 146 HALRRTMEKYATFCRLILCCDSTAKVIDPIKSRCLGIRVPAPSQEEIEKVLAKVATAEKF 205
Query: 219 DVTEGGLAALVRLCNGDMRKALNILQS 245
D+ + + G++R AL +L+S
Sbjct: 206 DLPSKLAVNVAKQSGGNLRYALMLLES 232
Score = 142 (55.0 bits), Expect = 5.5e-23, Sum P(2) = 5.5e-23
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
W++KY+P SL + H DI + + PHLL+YGP G GK + ILAV +++YG
Sbjct: 3 WIDKYKPTSLDKMDYHNDISINLKNMIKSGDFPHLLVYGPSGAGKKTRILAVLQEIYG 60
>CGD|CAL0004366 [details] [associations]
symbol:RFC5 species:5476 "Candida albicans" [GO:0031390
"Ctf18 RFC-like complex" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0003689
"DNA clamp loader activity" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 CGD:CAL0004366
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111
eggNOG:COG0470 EMBL:AACQ01000031 SUPFAM:SSF48019 Pfam:PF08542
RefSeq:XP_719478.1 ProteinModelPortal:Q5AD38 STRING:Q5AD38
GeneID:3638890 KEGG:cal:CaO19.2029 Uniprot:Q5AD38
Length = 362
Score = 184 (69.8 bits), Expect = 5.9e-23, Sum P(2) = 5.9e-23
Identities = 43/117 (36%), Positives = 66/117 (56%)
Query: 108 LELNASDDRGID--VVRQQIQDFASTQSFSFG----VKASVKLVLLDEADAMTKDAQFAL 161
LE+ SD D V++ ++D AST+ F K K+V+++EAD++++DAQ AL
Sbjct: 93 LEITPSDMGNNDRVVIQDLLKDVASTEQVDFANQSRAKHRFKIVIINEADSLSRDAQAAL 152
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGL 218
RR +EKY+ N R L+CN ++ II ++SR R ++ L HV E E L
Sbjct: 153 RRTMEKYSSNIRLILVCNSISNIIAPIKSRTLLVRIPSPSVDNINHILGHVAEKESL 209
Score = 139 (54.0 bits), Expect = 5.9e-23, Sum P(2) = 5.9e-23
Identities = 24/70 (34%), Positives = 41/70 (58%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
S WV+KYRP++L + H I +++ L PHLL+YGP G+GK + I +++G
Sbjct: 2 SLWVDKYRPRTLDQLTYHDSITNSLRALAKSGDFPHLLVYGPSGSGKKTRIYCTLNEIFG 61
Query: 101 AQYHNMILEL 110
Q + +++
Sbjct: 62 PQVEKLKIDV 71
>UNIPROTKB|G4NAB7 [details] [associations]
symbol:MGG_03202 "Replication factor C subunit 5"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
KO:K10756 GO:GO:0017111 EMBL:CM001234 SUPFAM:SSF48019 Pfam:PF08542
RefSeq:XP_003716781.1 ProteinModelPortal:G4NAB7
EnsemblFungi:MGG_03202T0 GeneID:2676506 KEGG:mgr:MGG_03202
Uniprot:G4NAB7
Length = 352
Score = 182 (69.1 bits), Expect = 6.4e-22, Sum P(2) = 6.4e-22
Identities = 48/171 (28%), Positives = 88/171 (51%)
Query: 87 KTSTILAVARKLYGAQYHNMILELNASDDRGID--VVRQQIQDFASTQSFSFGVKASVKL 144
+TS+ + + + YH LE+ SD D V++ +++ A TQ G + K+
Sbjct: 75 QTSSNRKLEFNIVASIYH---LEITPSDVGNYDRVVIQDLLKEVAQTQQVDQGARQRFKV 131
Query: 145 VLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVH 204
V+++EAD +++DAQ ALRR +EKY+ N R L+ N II ++SR R A
Sbjct: 132 VVINEADHLSRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTLLVRVAAPSEDE 191
Query: 205 VTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITE 255
+ L + EG V+ + + ++R+AL +L++ H ++++ +
Sbjct: 192 ICTVLAASAKKEGWTVSTQLHERIAKESGRNLRRALLMLETVHAQNEKVED 242
Score = 131 (51.2 bits), Expect = 6.4e-22, Sum P(2) = 6.4e-22
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 44 VEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
V+K+RP+SL + H ++ + + L PHLL+YGP G GK + I+A ++LYG
Sbjct: 5 VDKHRPRSLDSLTYHEELSERLRSLAQSGDFPHLLIYGPSGAGKKTRIVATLKELYG 61
>ASPGD|ASPL0000001589 [details] [associations]
symbol:AN6300 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IEA]
[GO:0003689 "DNA clamp loader activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0005663 "DNA replication factor C complex"
evidence=IEA] InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:AACD01000107 EMBL:BN001301 KO:K10756 GO:GO:0017111
eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 HOGENOM:HOG000224153
OMA:TRIMCLL OrthoDB:EOG4R273P RefSeq:XP_663904.1
ProteinModelPortal:Q5AZI0 STRING:Q5AZI0
EnsemblFungi:CADANIAT00006689 GeneID:2870977 KEGG:ani:AN6300.2
Uniprot:Q5AZI0
Length = 352
Score = 185 (70.2 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 56/196 (28%), Positives = 99/196 (50%)
Query: 103 YHNMILELNASDDRGID--VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
YH LE+ SD D VV++ +++ A TQ K K+V+++EAD +T+DAQ A
Sbjct: 91 YH---LEITPSDVGTYDRVVVQELLKEIAQTQQVDLSAKQRFKVVVINEADHLTRDAQAA 147
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +EKY+ N R L+ N + II ++SR R A + L + EG +
Sbjct: 148 LRRTMEKYSPNMRLILLANSTSNIIAPIRSRTLLVRVAAPSEEDICTILSTSAKREGWNE 207
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+ + ++R+AL + ++ + S++++++ T P P D E + + E
Sbjct: 208 APELNKRIAKESGRNLRRALLMFEAIYAQSEKVSDD-----TPIP-PPDWEALISVIAEE 261
Query: 281 SFAD-SFKRISEMKMR 295
A+ S R+ +++ R
Sbjct: 262 ILAERSPARLLQVRAR 277
Score = 123 (48.4 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 44 VEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
V+K+RP+SL ++ H ++ + L PHLL+YGP G GK + +A ++LYG
Sbjct: 5 VDKHRPRSLDTLSYHHELSARLRSLAQSGDFPHLLMYGPSGAGKKTRTIATLKELYG 61
>UNIPROTKB|H7C5P4 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] InterPro:IPR008921
InterPro:IPR013748 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF48019
EMBL:AC005081 Pfam:PF08542 HGNC:HGNC:9970 ChiTaRS:RFC2
ProteinModelPortal:H7C5P4 Ensembl:ENST00000497430 Uniprot:H7C5P4
Length = 198
Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 58/155 (37%), Positives = 86/155 (55%)
Query: 153 MTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212
MT AQ ALRR +E Y+K TRFAL CN +KII +QSRC R+ L + RL +V
Sbjct: 2 MTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNV 61
Query: 213 IEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQ 272
IE E + T+ GL A++ GDMR+ALN LQST I E V+ P P +++
Sbjct: 62 IEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKE 121
Query: 273 ISYWLLNESFADSFKRISEMKMRKGLALVDIVREV 307
+ +N + +++K ++ + G + DI+ +
Sbjct: 122 MIQHCVNANIDEAYKILAHL-WHLGYSPEDIIGNI 155
>UNIPROTKB|C9JXZ7 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003959 Pfam:PF00004 GO:GO:0005524 EMBL:AC112907
HGNC:HGNC:9972 ChiTaRS:RFC4 IPI:IPI00795756
ProteinModelPortal:C9JXZ7 SMR:C9JXZ7 STRING:C9JXZ7
Ensembl:ENST00000427785 HOGENOM:HOG000185875 ArrayExpress:C9JXZ7
Bgee:C9JXZ7 Uniprot:C9JXZ7
Length = 123
Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
Identities = 49/95 (51%), Positives = 66/95 (69%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG K PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 29 SGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 88
Query: 92 LAVARKLYGAQYHNM-ILELNASDDRGIDVVRQQI 125
LA AR+L+G + + +LELNASD+RGI VVR+++
Sbjct: 89 LAAARELFGPELFRLRVLELNASDERGIQVVREKV 123
>TIGR_CMR|BA_0019 [details] [associations]
symbol:BA_0019 "DNA polymerase III, gamma and tau subunits"
species:198094 "Bacillus anthracis str. Ames" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 PRINTS:PR00300 SMART:SM00382 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
HOGENOM:HOG000083933 KO:K02343 ProtClustDB:PRK05563 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 HSSP:P06710 RefSeq:NP_842590.1
RefSeq:YP_016623.1 RefSeq:YP_026309.1 ProteinModelPortal:Q81W18
IntAct:Q81W18 DNASU:1089003 EnsemblBacteria:EBBACT00000011079
EnsemblBacteria:EBBACT00000018474 EnsemblBacteria:EBBACT00000022003
GeneID:1089003 GeneID:2819477 GeneID:2849405 KEGG:ban:BA_0019
KEGG:bar:GBAA_0019 KEGG:bat:BAS0021 OMA:QTSHAYL
BioCyc:BANT260799:GJAJ-24-MONOMER BioCyc:BANT261594:GJ7F-25-MONOMER
Uniprot:Q81W18
Length = 562
Score = 223 (83.6 bits), Expect = 8.0e-17, P = 8.0e-17
Identities = 72/274 (26%), Positives = 125/274 (45%)
Query: 47 YRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLY-GPPGTGKTSTILAVARKLYGAQYHN 105
+RPQ DV + + T+ + ++ H L+ GP GTGKT TI V K ++
Sbjct: 10 WRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKT-TIAKVFAKAINCEHAP 68
Query: 106 M--------------------ILELNASDDRGIDVVRQQIQDFASTQSFSFGVKA-SVKL 144
+ +LE++A+ + G+D +R I+D + A K+
Sbjct: 69 VAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRD-IRD-----KVKYAPSAVEYKV 122
Query: 145 VLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVH 204
++DE ++ A AL + +E+ + F L + +KI P + SRC RF F +
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 205 VTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNIL-QSTHMASQQITEEAVYLCTG 263
+ ERL V+ EG V + L + R G MR AL+++ Q+ + +++T E V TG
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDERVTTEDVLAVTG 242
Query: 264 NPLPKDIEQISYWLLNESFADSFKRISEMKMRKG 297
+ + + + + + + + I EM M KG
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALRIIDEM-MGKG 275
>TIGR_CMR|DET_0585 [details] [associations]
symbol:DET_0585 "DNA polymerase III, gamma and tau
subunits, putative" species:243164 "Dehalococcoides ethenogenes
195" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0009360 "DNA polymerase III complex" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812
HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
RefSeq:YP_181327.1 ProteinModelPortal:Q3Z8X2 STRING:Q3Z8X2
GeneID:3230093 KEGG:det:DET0585 PATRIC:21608239 OMA:ISGDERI
ProtClustDB:PRK14950 BioCyc:DETH243164:GJNF-586-MONOMER
Uniprot:Q3Z8X2
Length = 559
Score = 217 (81.4 bits), Expect = 8.3e-16, P = 8.3e-16
Identities = 77/298 (25%), Positives = 137/298 (45%)
Query: 46 KYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLY-GPPGTGKTST--ILAVARK----- 97
K+RPQ+LAD+ + T+ S R+ L+ GP GTGKTST ILA A
Sbjct: 9 KWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTNQ 68
Query: 98 ------------LYGAQYHNM-ILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKL 144
L + +M ++E++A+ + G+D +R+ + + A+ K+
Sbjct: 69 GKGEPCNTCPMCLSITEGSSMDVIEIDAASNTGVDDIRELKEKVQYAPAL-----ANYKV 123
Query: 145 VLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVH 204
++DE ++ A AL + +E+ F L +++K++P + SRC RF F +
Sbjct: 124 YIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHRVSLSD 183
Query: 205 VTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS------THMASQQIT---- 254
++ +L+ + +AEG+++ L + R G R N+LQ T ++ Q+
Sbjct: 184 MSRKLEKISQAEGINIEPEALKLIARSAGGSFRDGENLLQQIATTYGTEISLPQVQAALG 243
Query: 255 ---EEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTM 309
+E + N L KDI+ LN AD I + R+ L+D +R++ +
Sbjct: 244 ISGDERIKTLAENILKKDIKN-GLQTLNAVVADG---IDLKQFRR--ELLDYLRQIML 295
>UNIPROTKB|Q97RF7 [details] [associations]
symbol:dnaX "DNA polymerase III, gamma and tau subunits"
species:170187 "Streptococcus pneumoniae TIGR4" [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE005672
GenomeReviews:AE005672_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
HOGENOM:HOG000083933 KO:K02343 ProtClustDB:PRK05563 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 HSSP:P06710 OMA:QTSHAYL PIR:G95099
RefSeq:NP_345352.1 ProteinModelPortal:Q97RF7
EnsemblBacteria:EBSTRT00000026555 GeneID:930817 KEGG:spn:SP_0865
PATRIC:19706123 Uniprot:Q97RF7
Length = 551
Score = 211 (79.3 bits), Expect = 5.6e-15, P = 5.6e-15
Identities = 72/280 (25%), Positives = 135/280 (48%)
Query: 46 KYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLY-GPPGTGKTST--ILAVA----RKL 98
KYR Q+ + + + T+ + + ++ H L+ GP GTGKTS I A A ++
Sbjct: 8 KYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMNCPNQV 67
Query: 99 YGAQYHNM-------------ILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLV 145
G +N ++E++A+ + G+D +R+ I+D ST + S A K+
Sbjct: 68 GGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIRE-IRD-KSTYAPSL---ARYKVY 122
Query: 146 LLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHV 205
++DE ++ A AL + +E+ T+N F L +++KI + SR RF F ++ +
Sbjct: 123 IIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQDI 182
Query: 206 TERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNP 265
E + +++E E + + + R G MR AL+IL ++A+ L GN
Sbjct: 183 KEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSIL-----------DQALSLTQGNE 231
Query: 266 LPKDI-EQISYWLLNESFADSFKRISEMKMRKGLALVDIV 304
L I E+I+ + + D +S+ + K L+ ++++
Sbjct: 232 LTTAISEEITGTISLSALDDYVAALSQQDVPKALSCLNLL 271
>UNIPROTKB|Q2TBV1 [details] [associations]
symbol:RFC3 "Replication factor C subunit 3" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0046683
"response to organophosphorus" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 KO:K10756 GO:GO:0046683
eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 EMBL:BC109606
IPI:IPI00713322 RefSeq:NP_001033636.1 UniGene:Bt.16980
ProteinModelPortal:Q2TBV1 STRING:Q2TBV1 PRIDE:Q2TBV1
Ensembl:ENSBTAT00000014278 GeneID:515602 KEGG:bta:515602 CTD:5983
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153
HOVERGEN:HBG040509 InParanoid:Q2TBV1 OMA:TRIMCLL OrthoDB:EOG4T4CVP
NextBio:20871915 Uniprot:Q2TBV1
Length = 356
Score = 206 (77.6 bits), Expect = 7.2e-15, P = 7.2e-15
Identities = 63/173 (36%), Positives = 89/173 (51%)
Query: 101 AQYHNMILELNASDDRGID--VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQ 158
+ YH LE+N SD D V+++ ++ A +Q + K+VLL E D +TKDAQ
Sbjct: 89 SNYH---LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQKDFKVVLLTEVDKLTKDAQ 145
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRF-AP-LEPV-HVTERLKHVIEA 215
ALRR +EKY R L CN +K+IP ++SRC R AP +E + HV L V +
Sbjct: 146 HALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHV---LSTVCKK 202
Query: 216 EGLDVTEGGLAALVRLCNGDMRKAL------NILQSTHMASQQI--TEEAVYL 260
EGL++ L ++RKAL + Q A Q+I T+ VYL
Sbjct: 203 EGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVYL 255
Score = 142 (55.0 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 39/147 (26%), Positives = 68/147 (46%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
S WV+KYRP SL + H++ + L PHLL+YGP G GK + I+ + R+LYG
Sbjct: 2 SLWVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYG 61
Query: 101 AQYHNMILE---LNASDDRGIDV------VRQQIQDFASTQSFSFGVKASVKLVLLDEA- 150
+ +E + + I++ ++ + S ++ +K V +
Sbjct: 62 VGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQL 121
Query: 151 -DAMTKDAQFALRRVIEKYTKNTRFAL 176
+ KD + L ++K TK+ + AL
Sbjct: 122 ETSSQKDFKVVLLTEVDKLTKDAQHAL 148
Score = 45 (20.9 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVY 259
E L H I E + +G L+ L+ C+G ++ + + + + Q+ +A+Y
Sbjct: 280 ELLTHCIPPE--IIMKGLLSELLHNCDGQLKGEVAQMAAYYEHRLQLGSKAIY 330
>UNIPROTKB|P09122 [details] [associations]
symbol:dnaX "DNA polymerase III subunit gamma/tau"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AL009126
GenomeReviews:AL009126_GR GO:GO:0017111 GO:GO:0003887 EMBL:D26185
GO:GO:0009360 EMBL:X17014 EMBL:X06803 EMBL:X52144 PIR:I40469
PIR:S13786 RefSeq:NP_387900.2 ProteinModelPortal:P09122 SMR:P09122
IntAct:P09122 EnsemblBacteria:EBBACT00000003868 GeneID:936899
KEGG:bsu:BSU00190 PATRIC:18971499 GenoList:BSU00190 eggNOG:COG2812
HOGENOM:HOG000083933 KO:K02343 ProtClustDB:PRK05563
BioCyc:BSUB:BSU00190-MONOMER SUPFAM:SSF48019 TIGRFAMs:TIGR02397
Uniprot:P09122
Length = 563
Score = 205 (77.2 bits), Expect = 3.7e-14, P = 3.7e-14
Identities = 69/273 (25%), Positives = 129/273 (47%)
Query: 47 YRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLY-GPPGTGKTSTILAVARKLY------ 99
+RPQ DV I T+ + + H L+ GP GTGKTS A+ +
Sbjct: 10 FRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVNCEHAPV 69
Query: 100 -----------GAQYHNM--ILELNASDDRGIDVVRQQIQDFASTQSFSFGVKA-SVKLV 145
G ++ ++E++A+ + G+D +R I+D F A + K+
Sbjct: 70 DEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRD-IRD-----KVKFAPSAVTYKVY 123
Query: 146 LLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHV 205
++DE ++ A AL + +E+ ++ F L + +KI + SRC RF F + +
Sbjct: 124 IIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITSQAI 183
Query: 206 TERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNIL-QSTHMASQQITEEAVYLCTGN 264
R+ +++AE L V EG L + +G MR AL++L Q+ + + E L TG
Sbjct: 184 VGRMNKIVDAEQLQVEEGSLEIIASAADGGMRDALSLLDQAISFSGDILKVEDALLITGA 243
Query: 265 PLPKDIEQISYWLLNESFADSFKRISEMKMRKG 297
I +++ L +++ +D+ + ++E+ +++G
Sbjct: 244 VSQLYIGKLAKSLHDKNVSDALETLNEL-LQQG 275
>UNIPROTKB|Q2GDS0 [details] [associations]
symbol:NSE_0492 "Putative DNA polymerase III, gamma/tau
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006259 "DNA metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006259 GO:GO:0017111
EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
RefSeq:YP_506376.1 ProteinModelPortal:Q2GDS0 STRING:Q2GDS0
GeneID:3931782 KEGG:nse:NSE_0492 PATRIC:22681033
HOGENOM:HOG000127275 OMA:IKEEIWI ProtClustDB:CLSK2528078
BioCyc:NSEN222891:GHFU-512-MONOMER Uniprot:Q2GDS0
Length = 396
Score = 197 (74.4 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 72/288 (25%), Positives = 134/288 (46%)
Query: 46 KYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY- 103
KYRP+ L ++ +V + + + + +LL GP GTGKT+T AV L
Sbjct: 9 KYRPRLLDEIVGQDFLVKCLSASIARDEVAGAILLSGPYGTGKTTTARAVTLSLLCLNRT 68
Query: 104 ------------------HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLV 145
H ILE++A+ + G++ VR I+ S K
Sbjct: 69 SALPCLKCDSCISILSGSHPDILEIDAASNTGVEDVRMLIEGALYKPLLS-----KYKSY 123
Query: 146 LLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHV 205
++DE +++ A AL +++E+ ++ +F L ++ KI + SRC +R + L V +
Sbjct: 124 IVDEVHMLSQSAFSALLKLLEEPPQHVKFFLATTELQKIPATIISRCQHYRLSRLSRVVI 183
Query: 206 TERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQST--HMASQQITEEAVYLCTG 263
ERL V E E +++T+ + + +G +R AL++L+ H + +IT V++
Sbjct: 184 AERLTQVAEKEQIEITQDAIKFIAEKADGSLRDALSLLEQVTLHPSEGKIT---VHVLRN 240
Query: 264 NPLPKDIEQISYWLLNESFADSFK----RISEMKMRKGLALVDIVREV 307
D+ ++ Y LL+ A K +++++ KG ++ I E+
Sbjct: 241 KMGLVDLSEV-YMLLDSIIAGDCKTSLGKLNDL-YSKGYEMLTIFMEL 286
>TIGR_CMR|NSE_0492 [details] [associations]
symbol:NSE_0492 "putative DNA polymerase III, gamma/tau
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006259 "DNA metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006259 GO:GO:0017111
EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
RefSeq:YP_506376.1 ProteinModelPortal:Q2GDS0 STRING:Q2GDS0
GeneID:3931782 KEGG:nse:NSE_0492 PATRIC:22681033
HOGENOM:HOG000127275 OMA:IKEEIWI ProtClustDB:CLSK2528078
BioCyc:NSEN222891:GHFU-512-MONOMER Uniprot:Q2GDS0
Length = 396
Score = 197 (74.4 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 72/288 (25%), Positives = 134/288 (46%)
Query: 46 KYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY- 103
KYRP+ L ++ +V + + + + +LL GP GTGKT+T AV L
Sbjct: 9 KYRPRLLDEIVGQDFLVKCLSASIARDEVAGAILLSGPYGTGKTTTARAVTLSLLCLNRT 68
Query: 104 ------------------HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLV 145
H ILE++A+ + G++ VR I+ S K
Sbjct: 69 SALPCLKCDSCISILSGSHPDILEIDAASNTGVEDVRMLIEGALYKPLLS-----KYKSY 123
Query: 146 LLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHV 205
++DE +++ A AL +++E+ ++ +F L ++ KI + SRC +R + L V +
Sbjct: 124 IVDEVHMLSQSAFSALLKLLEEPPQHVKFFLATTELQKIPATIISRCQHYRLSRLSRVVI 183
Query: 206 TERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQST--HMASQQITEEAVYLCTG 263
ERL V E E +++T+ + + +G +R AL++L+ H + +IT V++
Sbjct: 184 AERLTQVAEKEQIEITQDAIKFIAEKADGSLRDALSLLEQVTLHPSEGKIT---VHVLRN 240
Query: 264 NPLPKDIEQISYWLLNESFADSFK----RISEMKMRKGLALVDIVREV 307
D+ ++ Y LL+ A K +++++ KG ++ I E+
Sbjct: 241 KMGLVDLSEV-YMLLDSIIAGDCKTSLGKLNDL-YSKGYEMLTIFMEL 286
>TIGR_CMR|SPO_3550 [details] [associations]
symbol:SPO_3550 "DNA polymerase III, gamma and tau
subunits" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
ProtClustDB:PRK09111 InterPro:IPR022107 Pfam:PF12362
RefSeq:YP_168745.1 ProteinModelPortal:Q5LML3 GeneID:3193201
KEGG:sil:SPO3550 PATRIC:23380573 OMA:FTHLVTR Uniprot:Q5LML3
Length = 583
Score = 162 (62.1 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 40/155 (25%), Positives = 78/155 (50%)
Query: 104 HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRR 163
H ++E++A+ G++ +R+ I D ++ S A K+ ++DE ++ A AL +
Sbjct: 98 HVDVMEMDAASRTGVNDIREII-DSVRYRAAS----ARYKIYIIDEVHMLSTSAFNALLK 152
Query: 164 VIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEG 223
+E+ + +F ++ K+ + SRC RF +EP + ++ + +AEG + E
Sbjct: 153 TLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEPEDMIALMRRIADAEGAQIAED 212
Query: 224 GLAALVRLCNGDMRKALNILQS--THMASQQITEE 256
LA +VR G R A ++L +H A + E+
Sbjct: 213 ALALIVRAAEGSARDATSLLDQAISHGAGETSAEQ 247
Score = 81 (33.6 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 37 DIKASPW---VEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTIL 92
D ++P+ KYRP++ AD+ +V T+ + +R+ ++ G GTGKT+T
Sbjct: 3 DAPSTPYQVLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTAR 62
Query: 93 AVAR 96
+A+
Sbjct: 63 IIAK 66
>TIGR_CMR|CHY_2675 [details] [associations]
symbol:CHY_2675 "putative DNA polymerase III, gamma/tau
subunits" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006260 "DNA replication" evidence=ISS] InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 RefSeq:YP_361464.1 ProteinModelPortal:Q3A8S0
STRING:Q3A8S0 GeneID:3728788 KEGG:chy:CHY_2675 PATRIC:21278371
OMA:DICHAIN BioCyc:CHYD246194:GJCN-2674-MONOMER Uniprot:Q3A8S0
Length = 511
Score = 195 (73.7 bits), Expect = 5.2e-13, P = 5.2e-13
Identities = 56/231 (24%), Positives = 108/231 (46%)
Query: 46 KYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLY-GPPGTGKTSTILAVARKL------ 98
K+RP++ +++ IV + + ++ H L+ GP GTGKT+T +A+ +
Sbjct: 8 KWRPKTFSEIVGQETIVKILKNAVATMQVAHAYLFSGPRGTGKTTTAKVLAKAVNCEHPV 67
Query: 99 -----------YGAQYHNM--ILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLV 145
G ++ + E++A+ +RGID +R+ + + + K+
Sbjct: 68 EGEPCNQCPSCIGINNQSLLNVFEIDAASNRGIDEIRELRESIKLVPA-----QGKYKVY 122
Query: 146 LLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHV 205
++DE +T +A AL + +E+ ++ F L + NK+ + SRC RF F + +
Sbjct: 123 IIDEVHMLTNEAFNALLKTLEEPPEHVIFILATTEFNKVPVTIVSRCQRFDFKRISTKTI 182
Query: 206 TERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEE 256
E LK++ E E L L + G +R AL+++ + + +IT E
Sbjct: 183 WEHLKNIAEKEKLQYEAEALHLIAEASEGGLRDALSLMDQILVFNPKITVE 233
>UNIPROTKB|E7DN81 [details] [associations]
symbol:E7DN81 "DnaX DNA polymerase III clamp loader complex
gamma-tau-delta subunit" species:59241 "Streptococcus phage Dp-1"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 EMBL:HQ268735
RefSeq:YP_004306905.1 IntAct:E7DN81 GeneID:10358613 Uniprot:E7DN81
Length = 341
Score = 190 (71.9 bits), Expect = 6.9e-13, P = 6.9e-13
Identities = 60/226 (26%), Positives = 104/226 (46%)
Query: 46 KYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLY-GPPGTGKTSTILAVARKLYGAQYH 104
KYRPQ+ +V A + + + + H L+ G GTGKT+T A+ +
Sbjct: 6 KYRPQTFEEVVAQEYVKEILLNQLQNGAIKHGYLFCGGAGTGKTTTARIFAKDVNKGL-- 63
Query: 105 NMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRV 164
+E++A+ + G++ VR I+D S + + K+ ++DE ++ A AL +
Sbjct: 64 GSPIEIDAASNNGVENVRNIIED-----SRYKSMDSEFKVYIIDEVHMLSTGAFNALLKT 118
Query: 165 IEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE-----GLD 219
+E+ + T F L KI + SR RF F ++ + +L+ +IE+E G
Sbjct: 119 LEEPSSGTVFILCTTDPQKIPDTILSRVQRFDFTRIDNDDIVNQLQFIIESENEEGAGYS 178
Query: 220 VTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNP 265
L+ + +L NG MR ++ L+ S + EAV G P
Sbjct: 179 YERDALSFIGKLANGGMRDSITRLEKVLDYSHHVDMEAVSNALGVP 224
>TIGR_CMR|GSU_0094 [details] [associations]
symbol:GSU_0094 "DNA polymerase III, gamma and tau
subunits" species:243231 "Geobacter sulfurreducens PCA" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 PRINTS:PR00300 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 HOGENOM:HOG000083933
KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397 HSSP:P28631
RefSeq:NP_951156.1 ProteinModelPortal:Q74GZ9 GeneID:2688299
KEGG:gsu:GSU0094 PATRIC:22022936 OMA:ELIDHFR ProtClustDB:PRK14965
BioCyc:GSUL243231:GH27-55-MONOMER Uniprot:Q74GZ9
Length = 579
Score = 193 (73.0 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 56/239 (23%), Positives = 113/239 (47%)
Query: 46 KYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLY-GPPGTGKTSTILAVARKLYGAQYH 104
K+RPQ+ +D+ + T+ R+ H L+ G G GKTS+ +A+ L Q
Sbjct: 9 KWRPQTFSDLTGQEHVSRTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALNCEQGM 68
Query: 105 -----NM--------------ILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLV 145
N+ +LE++ + + G+D +R+ ++ S + K+
Sbjct: 69 SPEPCNVCPACTEITAGTSVDVLEIDGASNTGVDDIRELRENVKYLPS-----RLRYKIF 123
Query: 146 LLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHV 205
++DE ++ +A AL + +E+ + +F + +K+ + SRC RF F + V
Sbjct: 124 IIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKLPITILSRCQRFDFRRIPLAKV 183
Query: 206 TERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNIL-QSTHMASQQITEEAVYLCTG 263
RL+++++ EG+ +++ LA + R +G MR +L++L Q + + ++ V G
Sbjct: 184 VARLRYIVDREGISISDESLAVVARKGDGSMRDSLSVLDQVLAFCGETVNDDDVVSLLG 242
>TAIR|locus:2180315 [details] [associations]
symbol:EMB2775 "EMBRYO DEFECTIVE 2775" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=IMP] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0006260
KO:K10756 GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542
HOGENOM:HOG000224153 OMA:TRIMCLL HSSP:Q8U4J3 EMBL:AY074381
EMBL:AY091236 IPI:IPI00528406 RefSeq:NP_198126.1 UniGene:At.19785
ProteinModelPortal:Q8VXX4 SMR:Q8VXX4 STRING:Q8VXX4 PaxDb:Q8VXX4
PRIDE:Q8VXX4 EnsemblPlants:AT5G27740.1 GeneID:832836
KEGG:ath:AT5G27740 TAIR:At5g27740 InParanoid:Q8VXX4
PhylomeDB:Q8VXX4 ProtClustDB:CLSN2687133 ArrayExpress:Q8VXX4
Genevestigator:Q8VXX4 Uniprot:Q8VXX4
Length = 354
Score = 185 (70.2 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 45/154 (29%), Positives = 83/154 (53%)
Query: 108 LELNASDDRGID--VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVI 165
+EL SD D +V++ I++ A + K K+++L+E D ++++AQ +LRR +
Sbjct: 95 VELTPSDAGFQDRYIVQEIIKEMAKNRPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTM 154
Query: 166 EKYTKNTRFALICNQVNKIIPALQSRCTRFRF-APLEPVHVTERLKHVIEAEGLDVTEGG 224
EKY+ + R L CN +K+ A++SRC R AP + + + L+ V + E L + +G
Sbjct: 155 EKYSSSCRLILCCNSSSKVTEAIKSRCLNVRINAPSQE-EIVKVLEFVAKKESLQLPQGF 213
Query: 225 LAALVRLCNGDMRKALNILQSTHMASQQITEEAV 258
A + N +R+A+ L++ + + T V
Sbjct: 214 AARIAEKSNRSLRRAILSLETCRVQNYPFTGNQV 247
Score = 181 (68.8 bits), Expect = 9.9e-12, P = 9.9e-12
Identities = 44/130 (33%), Positives = 70/130 (53%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
WV+KYRP+SL V H DI + +L SE PHLL YGP G+GK + I+A+ +++YGA
Sbjct: 3 WVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYGAS 62
Query: 103 YHNMILELNA-SDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +E A D G + ++ +ST V L +DA +D ++ +
Sbjct: 63 AEKVKVENRAWKVDAGSRTIDLELTTLSSTNH-----------VELTPSDAGFQD-RYIV 110
Query: 162 RRVIEKYTKN 171
+ +I++ KN
Sbjct: 111 QEIIKEMAKN 120
>UNIPROTKB|Q0C591 [details] [associations]
symbol:dnaX "DNA polymerase III, subunits gamma and tau"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009360 "DNA polymerase III complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:CP000158 GenomeReviews:CP000158_GR GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 RefSeq:YP_759102.1 STRING:Q0C591 GeneID:4289739
KEGG:hne:HNE_0372 PATRIC:32213536 OMA:TCARIVS ProtClustDB:PRK09111
BioCyc:HNEP228405:GI69-416-MONOMER InterPro:IPR022107 Pfam:PF12362
Uniprot:Q0C591
Length = 578
Score = 151 (58.2 bits), Expect = 7.1e-12, Sum P(2) = 7.1e-12
Identities = 42/145 (28%), Positives = 74/145 (51%)
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFG-VKASVKLVLLDEADAMTKDAQF 159
A H +LEL+A+ G+ +R + S +G V A K+ ++DE M +A F
Sbjct: 122 ASRHPDVLELDAASRTGVADMRDLLD------SARYGPVSARYKVYIIDEVH-MLSNASF 174
Query: 160 -ALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGL 218
AL + +E+ + +F ++ K+ + SRC RF L+ ++ L +V ++EG
Sbjct: 175 NALLKTLEEPPPHLKFIFATTEIRKVPVTVLSRCQRFDLKRLDSGELSRHLGNVAQSEGA 234
Query: 219 DVTEGGLAALVRLCNGDMRKALNIL 243
+V+E LA + R G +R L++L
Sbjct: 235 NVSEEALALIARAAEGSVRDGLSLL 259
Score = 80 (33.2 bits), Expect = 7.1e-12, Sum P(2) = 7.1e-12
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 46 KYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKL 98
KYRP+ D+ +V T+ R+ H +L G G GKT+T +AR L
Sbjct: 35 KYRPRRFEDLIGQEAMVRTLSNAFETGRIAHGFMLTGVRGVGKTTTARLLARGL 88
>TAIR|locus:2172013 [details] [associations]
symbol:AT5G45720 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0009360 "DNA polymerase III complex" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
EMBL:CP002688 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
GO:GO:0003887 GO:GO:0009360 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
IPI:IPI00536419 RefSeq:NP_199384.2 UniGene:At.51078
UniGene:At.70630 ProteinModelPortal:F4KEM0 SMR:F4KEM0 PRIDE:F4KEM0
EnsemblPlants:AT5G45720.1 GeneID:834611 KEGG:ath:AT5G45720
OMA:ESGRSEI Uniprot:F4KEM0
Length = 966
Score = 189 (71.6 bits), Expect = 7.6e-12, P = 7.6e-12
Identities = 70/295 (23%), Positives = 132/295 (44%)
Query: 25 NGKNVIVSGTPPDIKASPW----VEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLY 80
NGK+ ++ G K + W +KY P++ D+ +V + ++ R+ L ++
Sbjct: 324 NGKDSVI-GKKSSRKNTRWHQSFTQKYAPRTFRDLLGQNLVVQALSNAIAKRRVGLLYVF 382
Query: 81 -GPPGTGKTSTILAVARKL--YGAQYHNM--ILELNASDDRGIDVVRQQIQDFASTQSFS 135
GP GTGKTS AR L + + + S D G + + I++ +SF
Sbjct: 383 HGPNGTGKTSCARVFARALNCHSTEQSKPCGVCSSCVSYDDGKN---RYIREMGPVKSFD 439
Query: 136 F-------GVKASVK--LVLL-DEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKII 185
F ++ K LVL+ D+ D M+ D L +++++ + F L+C+ ++ +
Sbjct: 440 FENLLDKTNIRQQQKQQLVLIFDDCDTMSTDCWNTLSKIVDRAPRRVVFVLVCSSLDVLP 499
Query: 186 PALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
+ SRC +F F L+ V + + L+ + E +D+ + L + +G +R A L+
Sbjct: 500 HIIVSRCQKFFFPKLKDVDIIDSLQLIASKEEIDIDKDALKLVASRSDGSLRDAEMTLEQ 559
Query: 246 THMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMK--MRKGL 298
+ +I+ V G L D + + L S AD+ + ++ M GL
Sbjct: 560 LSLLGTRISVPLVQEMVG--LISDEKLVDLLDLALS-ADTVNTVKNLRIIMETGL 611
>TAIR|locus:2032432 [details] [associations]
symbol:AT1G24290 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR000449 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR009060 Pfam:PF00004 Pfam:PF00627 SMART:SM00382
EMBL:CP002684 GO:GO:0005524 InterPro:IPR015940 SMART:SM00165
PROSITE:PS50030 GO:GO:0017111 SUPFAM:SSF46934 EMBL:AC002396
UniGene:At.41453 UniGene:At.63976 HOGENOM:HOG000017623 KO:K07478
InterPro:IPR021886 Pfam:PF12002 IPI:IPI00523189 PIR:T00660
RefSeq:NP_173839.1 HSSP:Q56313 ProteinModelPortal:O48696 SMR:O48696
STRING:O48696 PRIDE:O48696 EnsemblPlants:AT1G24290.1 GeneID:839045
KEGG:ath:AT1G24290 TAIR:At1g24290 InParanoid:O48696 OMA:FEVIAPL
PhylomeDB:O48696 ProtClustDB:CLSN2682390 Genevestigator:O48696
Uniprot:O48696
Length = 525
Score = 185 (70.2 bits), Expect = 8.7e-12, P = 8.7e-12
Identities = 68/227 (29%), Positives = 102/227 (44%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTS---ENRLPHLLLYGPPGTGKTSTILAVARKL 98
P E+ RP++L DV ++ L S NRLP ++ +GPPGTGKTS ++
Sbjct: 102 PLSERMRPRTLDDVVGQDHLLSPSSLLRSAVESNRLPSIVFWGPPGTGKTSIAKSLINSS 161
Query: 99 YGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQ 158
+ + L+A G+ VR ++ A + G K +V + +DE K Q
Sbjct: 162 KDPSLYRFV-SLSAVTS-GVKDVRDAVES-AKRLNLE-GRKRTV--LFMDEVHRFNKSQQ 215
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE--AE 216
VIE + A N +I L SRC PL+P HV L+ ++
Sbjct: 216 DTFLPVIEDGSILFIGATTENPSFHLITPLLSRCRVLTLNPLKPNHVETLLRRAVDDSER 275
Query: 217 GL----DVTEGGLAALVRLCNGDMRKALNILQ-STHMASQQITEEAV 258
GL +V + + L C+GD R ALN L+ S MA+ + +AV
Sbjct: 276 GLPNSVEVDDSVIEFLANNCDGDARVALNALEISATMATTRAGTDAV 322
>UNIPROTKB|P63975 [details] [associations]
symbol:dnaX "DNA polymerase III subunit gamma/tau"
species:1773 "Mycobacterium tuberculosis" [GO:0040007 "growth"
evidence=IMP] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 EMBL:BX842583 GO:GO:0006260
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812
HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
PIR:B70796 RefSeq:NP_218238.1 RefSeq:NP_338379.1
RefSeq:YP_006517213.1 ProteinModelPortal:P63975 SMR:P63975
PRIDE:P63975 EnsemblBacteria:EBMYCT00000002188
EnsemblBacteria:EBMYCT00000072154 GeneID:13317335 GeneID:885361
GeneID:922673 KEGG:mtc:MT3824 KEGG:mtu:Rv3721c KEGG:mtv:RVBD_3721c
PATRIC:18130168 TubercuList:Rv3721c OMA:IARVEPH
ProtClustDB:PRK14952 Uniprot:P63975
Length = 578
Score = 131 (51.2 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
Identities = 34/137 (24%), Positives = 71/137 (51%)
Query: 107 ILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIE 166
++EL+A+ G+D R+ ++D ++F V++ ++ ++DEA +T AL +++E
Sbjct: 89 VVELDAASHGGVDDTRE-LRD----RAFYAPVQSRYRVFIVDEAHMVTTAGFNALLKIVE 143
Query: 167 KYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLA 226
+ ++ F + K++P ++SR + F L P + L + E EG+ V +
Sbjct: 144 EPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALLARICEQEGVVVDDAVYP 203
Query: 227 ALVRLCNGDMRKALNIL 243
++R G R L++L
Sbjct: 204 LVIRAGGGSPRDTLSVL 220
Score = 92 (37.4 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
Identities = 22/58 (37%), Positives = 29/58 (50%)
Query: 46 KYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLY-GPPGTGKTSTILAVARKLYGAQ 102
KYRP S A+V + + R+ H L+ GP G GKTS+ +AR L AQ
Sbjct: 6 KYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQ 63
>TIGR_CMR|CJE_1293 [details] [associations]
symbol:CJE_1293 "DNA polymerase III, gamma/tau subunits"
species:195099 "Campylobacter jejuni RM1221" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR012763
SMART:SM00382 GO:GO:0005524 GO:GO:0006260 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 TIGRFAMs:TIGR02397
RefSeq:YP_179281.1 ProteinModelPortal:Q5HTV4 STRING:Q5HTV4
GeneID:3231800 KEGG:cjr:CJE1293 PATRIC:20044382 OMA:EMMLFLK
ProtClustDB:PRK08451 BioCyc:CJEJ195099:GJC0-1319-MONOMER
Uniprot:Q5HTV4
Length = 509
Score = 174 (66.3 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 64/278 (23%), Positives = 119/278 (42%)
Query: 46 KYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLY-GPPGTGKTSTILAVARKLYGAQ-- 102
KYRP++ ++ + + ++ + NRL H L+ G G+GKTS+ +R L Q
Sbjct: 8 KYRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSGLRGSGKTSSARIFSRALVCEQGP 67
Query: 103 -----------------YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLV 145
H I+E++A+ +RG++ ++ I+ T S A K+
Sbjct: 68 SDTPCGTCKHCLAALEGKHIDIIEMDAASNRGLEDIQALIEQTKYTPSM-----ARFKIF 122
Query: 146 LLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHV 205
++DE +T A AL + +E+ +F L K+ + SR FRF + +
Sbjct: 123 IIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRTQHFRFKQIPQSEI 182
Query: 206 TERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNIL-QSTHMASQQITEEAVYLCTGN 264
LK ++ E + E L + R NG +R L +L Q+ +I+ G
Sbjct: 183 LNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLTLLDQAIIFCQNEISISKTTDMLGF 242
Query: 265 PLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVD 302
P+ I+ +L + F + E++ + +++D
Sbjct: 243 LDPEKIKAFYQAILTKDKEKVFAYLEELQDYEASSVID 280
>TAIR|locus:2065299 [details] [associations]
symbol:STI "STICHEL" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0009360 "DNA
polymerase III complex" evidence=IEA] [GO:0010026 "trichome
differentiation" evidence=IMP] [GO:0010091 "trichome branching"
evidence=IMP] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0000278 "mitotic cell cycle" evidence=RCA] [GO:0003002
"regionalization" evidence=RCA] [GO:0007155 "cell adhesion"
evidence=RCA] [GO:0009887 "organ morphogenesis" evidence=RCA]
[GO:0009888 "tissue development" evidence=RCA] [GO:0010014
"meristem initiation" evidence=RCA] [GO:0010090 "trichome
morphogenesis" evidence=RCA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0010638 "positive regulation of organelle organization"
evidence=RCA] [GO:0016049 "cell growth" evidence=RCA] [GO:0016926
"protein desumoylation" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0045595 "regulation of cell
differentiation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048589 "developmental growth" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 GO:GO:0005886 GO:GO:0005524 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0006260 GO:GO:0010091
EMBL:AC004136 GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 EMBL:AF264023 IPI:IPI00542444
PIR:T00615 RefSeq:NP_565285.1 UniGene:At.19529 HSSP:P06710
ProteinModelPortal:O64728 SMR:O64728 STRING:O64728 PaxDb:O64728
PRIDE:O64728 EnsemblPlants:AT2G02480.1 GeneID:814777
KEGG:ath:AT2G02480 TAIR:At2g02480 HOGENOM:HOG000244020
InParanoid:O64728 OMA:CHSKTLR PhylomeDB:O64728
ProtClustDB:CLSN2687935 ArrayExpress:O64728 Genevestigator:O64728
Uniprot:O64728
Length = 1218
Score = 143 (55.4 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 54/237 (22%), Positives = 100/237 (42%)
Query: 75 PHLLLYGPPGTGKTST--ILAVARKL----------YGAQYHNMIL-------ELNASDD 115
P L GP GTGKTST I + A Y + ++ + EL+ ++
Sbjct: 484 PVYLFQGPRGTGKTSTARIFSAALNCVATEEMKPCGYCKECNDFMSGKSKDFWELDGANK 543
Query: 116 RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFA 175
+G D VR +++ + + + K+ ++DE + + + +E + F
Sbjct: 544 KGADKVRYLLKNLPTILPRN---SSMYKVFVIDECHLLPSKTWLSFLKFLENPLQKVVFI 600
Query: 176 LICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGD 235
I + + +QSRC +F F L+ + RLK + E LDV L + +G
Sbjct: 601 FITTDLENVPRTIQSRCQKFLFDKLKDSDIVVRLKKIASDENLDVDLHALDLIAMNADGS 660
Query: 236 MRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEM 292
+R A +L+ + ++IT V G + + ++ L+ A++ KR E+
Sbjct: 661 LRDAETMLEQLSLLGKRITTALVNELVGVVSDEKLLELLELALSSDTAETVKRAREL 717
Score = 84 (34.6 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 34 TPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRL-PHLLLYGPPGTGKTST 90
TP I++ + +KYRP ++ +V ++ +R+ P L GP GTGKTST
Sbjct: 444 TPETIRS--FSQKYRPMFFEELIGQSIVVQSLMNAVKRSRIAPVYLFQGPRGTGKTST 499
>ASPGD|ASPL0000029025 [details] [associations]
symbol:AN5617 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 EMBL:AACD01000098 EMBL:BN001305 GO:GO:0017111
eggNOG:COG2256 HOGENOM:HOG000017623 KO:K07478 OMA:HDEPDAF
InterPro:IPR021886 Pfam:PF12002 OrthoDB:EOG4Z924S
RefSeq:XP_663221.1 ProteinModelPortal:Q5B1G3 STRING:Q5B1G3
EnsemblFungi:CADANIAT00003453 GeneID:2871909 KEGG:ani:AN5617.2
Uniprot:Q5B1G3
Length = 528
Score = 172 (65.6 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 58/214 (27%), Positives = 98/214 (45%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDT--IDRLTSENRLPHLLLYGPPGTGKTSTILAVAR 96
+A+P E+ RP++L +V + T + L E+R+P ++L+G PGTGKT TI V
Sbjct: 113 RAAPLAERMRPRTLDEVCGQELVGPTGVLRGLIEEDRVPSMILWGGPGTGKT-TIARVIA 171
Query: 97 KLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
+ G+++ +E+N S G+ ++ FA +S G+ ++ DE +K
Sbjct: 172 SMVGSRF----VEIN-STSTGVAECKKI---FADAKS-ELGLTGRKTIIFCDEIHRFSKS 222
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
Q +E A N K+ AL SRC F + L + L ++ E
Sbjct: 223 QQDVFLGPVESGQVTLIGATTENPSFKVQNALLSRCRTFTLSKLTDEDIRSILNRALKTE 282
Query: 217 GLDVTEGGLAA------LVRLCNGDMRKALNILQ 244
G + + L L + +GD R +LN+L+
Sbjct: 283 GPNYSPSALVDDELLDYLAKFADGDARTSLNLLE 316
>TIGR_CMR|CHY_2201 [details] [associations]
symbol:CHY_2201 "ATPase, AAA family" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0019538 "protein metabolic process"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004
SMART:SM00382 GO:GO:0005524 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0017111 eggNOG:COG2256 KO:K07478 ProtClustDB:PRK13342
InterPro:IPR021886 Pfam:PF12002 OMA:FEVIAPL RefSeq:YP_361014.1
ProteinModelPortal:Q3AA20 STRING:Q3AA20 GeneID:3726481
KEGG:chy:CHY_2201 PATRIC:21277469 HOGENOM:HOG000017624
BioCyc:CHYD246194:GJCN-2200-MONOMER Uniprot:Q3AA20
Length = 444
Score = 166 (63.5 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 62/213 (29%), Positives = 100/213 (46%)
Query: 39 KASPWVEKYRPQSLADVAAHRDIVDT---IDRLTSENRLPHLLLYGPPGTGKTSTILAVA 95
K +P + RP+SL + I+ + R +RL L+ YGPPGTGKT+ LA
Sbjct: 13 KEAPLAYRMRPRSLDEFIGQEHILGEGKLLRRAILSDRLGSLIFYGPPGTGKTT--LA-- 68
Query: 96 RKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK 155
++ + + +NA G+ +R+ I+ + + +G + ++ +DE K
Sbjct: 69 -RIIASTTKSGFESINAVTS-GVGEIREVIKKAKEREKY-YGERT---VLFIDEIHRFNK 122
Query: 156 DAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKH-VIE 214
Q AL +E T A N ++ L SR F F PLEP H+ E ++ +++
Sbjct: 123 AQQDALLPEVEAGTIVLIGATTENPYFEVNAPLLSRSRIFEFKPLEPEHIREIVRRALVD 182
Query: 215 AE-GL-----DVTEGGLAALVRLCNGDMRKALN 241
E GL +++E L LV + GD R ALN
Sbjct: 183 KERGLGEYKVEISEEALDHLVTMAAGDARAALN 215
>DICTYBASE|DDB_G0272158 [details] [associations]
symbol:wrnip1 "putative Werner helicase-interacting
protein 1" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0009378
"four-way junction helicase activity" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR008824
Pfam:PF05496 SMART:SM00382 dictyBase:DDB_G0272158 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0006260 GO:GO:0006281
GenomeReviews:CM000151_GR GO:GO:0006310 EMBL:AAFI02000008
GO:GO:0009378 eggNOG:COG2256 InterPro:IPR021886 Pfam:PF12002
RefSeq:XP_645251.1 ProteinModelPortal:Q75JU2 STRING:Q75JU2
EnsemblProtists:DDB0305118 GeneID:8618418 KEGG:ddi:DDB_G0272158
InParanoid:Q75JU2 Uniprot:Q75JU2
Length = 876
Score = 156 (60.0 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 66/228 (28%), Positives = 100/228 (43%)
Query: 41 SPWVEKYRPQSLADVAAHRDIV--DTI-DRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
+P E+ RP L+D ++ D I +L LP +LYGPPG GKT+ VA K
Sbjct: 195 APLSEQMRPTELSDFIGQESLLVGDPIVKKLFQSPELPSFILYGPPGCGKTTLAQIVASK 254
Query: 98 LYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDA 157
+ Y+ I L+A G+ +++ I +T FG K ++ +DE K
Sbjct: 255 ---SNYN--INALSAVGS-GVKDIKEVIDKARNT--LQFGKKT---ILFIDEIHRYNKLQ 303
Query: 158 QFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEG 217
Q L IE A N ++ AL SRC F+ L ++ +K +E
Sbjct: 304 QDVLLPAIESGIIILIGATTENPSFELNGALLSRCKVFKMEKLTKENLETLIKRTLEVTP 363
Query: 218 L--D----VTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVY 259
L D + E + +L + +GD R A+N+L MA + EE Y
Sbjct: 364 LLMDRRLIMDEDAIKSLAEIADGDARVAINVLD---MAIKANKEEQTY 408
Score = 56 (24.8 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 5 ETVSLMDFDEDEN-QNLKPKDNGKNVI 30
E + + DF+ED+N ++ K NG N I
Sbjct: 38 EIIDINDFEEDQNLYKIQNKSNGNNSI 64
>TIGR_CMR|ECH_0014 [details] [associations]
symbol:ECH_0014 "DNA polymerase III, subunits gamma and
tau" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR003583
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00278 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0006260 GO:GO:0006281 GO:GO:0017111 GO:GO:0003887
GO:GO:0009360 eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 RefSeq:YP_506849.1
ProteinModelPortal:Q2GI84 STRING:Q2GI84 GeneID:3926952
KEGG:ech:ECH_0014 PATRIC:20575601 OMA:HPDVIEI ProtClustDB:PRK14964
BioCyc:ECHA205920:GJNR-14-MONOMER Uniprot:Q2GI84
Length = 505
Score = 164 (62.8 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 58/228 (25%), Positives = 99/228 (43%)
Query: 46 KYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTST--ILAVARK-LYG- 100
KYRP + D+ +V + N++P +LL G G GKT+ I+++ + G
Sbjct: 19 KYRPSNFKDLIGQEVLVRVLHNAFHLNKIPESILLTGISGVGKTTAARIISMCLNCISGP 78
Query: 101 -------AQYHNMILELNASDDRGIDVVRQ-QIQDFASTQSFS--FGVKASVKLVLLDEA 150
Q I N D ID I+D S + + K+ ++DE
Sbjct: 79 TSDPCNTCQNCISIKNFNHPDVIEIDAASNTSIEDVKVILENSRYMPISSKFKVYIIDEV 138
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
++ A AL +V+E+ +F L +V KI + SRC RF F + + + LK
Sbjct: 139 HMLSNSAFNALLKVLEEPAPYVKFILATTEVKKIPVTIISRCQRFDFQRISTDKLVDHLK 198
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAV 258
V + E + E + + +G +R AL++L+ + S +I E +
Sbjct: 199 VVAKKENVSFDEESIKLIAYNADGSIRNALSLLEQAAIYSNKILSENI 246
>TIGR_CMR|CBU_0659 [details] [associations]
symbol:CBU_0659 "DNA polymerase III, gamma and tau
subunits" species:227377 "Coxiella burnetii RSA 493" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR021029
InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170 PRINTS:PR00300
SMART:SM00382 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0017111 GO:GO:0003887
GO:GO:0009360 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
HOGENOM:HOG000083934 HSSP:P06710 RefSeq:NP_819689.1
ProteinModelPortal:Q83DN8 SMR:Q83DN8 GeneID:1208544
KEGG:cbu:CBU_0659 PATRIC:17929995 OMA:CETKLLA ProtClustDB:PRK14958
BioCyc:CBUR227377:GJ7S-653-MONOMER Uniprot:Q83DN8
Length = 509
Score = 162 (62.1 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 53/216 (24%), Positives = 94/216 (43%)
Query: 46 KYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLY-GPPGTGKT--STILAVARKLYGAQ 102
K+RP+ +V +V + + L H L+ G G GKT S ILA
Sbjct: 9 KWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGV 68
Query: 103 YHNMILEL-NASD-DRG-------IDVV-RQQIQDFAST-QSFSFG-VKASVKLVLLDEA 150
N + N + D G +D R +++D + + K K+ L+DE
Sbjct: 69 SANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEV 128
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
++ + AL + +E+ + +F L +K+ + SRC +F A L P+ + +
Sbjct: 129 HMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQ 188
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQST 246
H+++ E ++ L L R NG +R AL++L +
Sbjct: 189 HLLKEENVEFENAALDLLARAANGSVRDALSLLDQS 224
Score = 41 (19.5 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 11/45 (24%), Positives = 25/45 (55%)
Query: 251 QQITEEAVYLCTGNPLPKDI-EQISYWLLNESFADSFKRISEMKM 294
+++T+ +YL NP K + +Q ++E+ ++ F R +K+
Sbjct: 408 KELTDNRLYLML-NPKQKPLLQQKHIERISEALSEHFNRTITVKI 451
>TAIR|locus:2012497 [details] [associations]
symbol:AT1G14460 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0009360 "DNA polymerase III complex"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IDA]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 EMBL:CP002684
GO:GO:0005886 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 IPI:IPI00525486 RefSeq:NP_172898.2
UniGene:At.43554 UniGene:At.69297 ProteinModelPortal:F4HW65
SMR:F4HW65 PRIDE:F4HW65 EnsemblPlants:AT1G14460.1 GeneID:838008
KEGG:ath:AT1G14460 OMA:REVIAYK Uniprot:F4HW65
Length = 1116
Score = 129 (50.5 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 39/186 (20%), Positives = 80/186 (43%)
Query: 107 ILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIE 166
+LEL+A G + VR ++ + S K+ ++DE + +L + +E
Sbjct: 509 LLELDAGKKNGAEKVRYLLKKLLTLAPQS---SQRYKVFVIDECHLLPSRTWLSLLKFLE 565
Query: 167 KYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLA 226
+ F I ++ + +QSRC ++ F + + RL+ + E LDV L
Sbjct: 566 NPLQKFVFVCITTDLDNVPRTIQSRCQKYIFNKVRDGDIVVRLRKIASDENLDVESQALD 625
Query: 227 ALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSF 286
+ +G +R A +L+ + ++IT + V G + ++ L+ A++
Sbjct: 626 LIALNADGSLRDAETMLEQLSLMGKRITVDLVNELVGVVSDDKLLELLELALSSDTAETV 685
Query: 287 KRISEM 292
K+ E+
Sbjct: 686 KKAREL 691
Score = 87 (35.7 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 34 TPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLY-GPPGTGKTST-- 90
TP I++ +KY+P ++ +V ++ + R+ H+ L+ GP GTGKTST
Sbjct: 417 TPESIQSLS--QKYKPMFFDELIGQSIVVQSLMNAVKKGRVAHVYLFQGPRGTGKTSTAR 474
Query: 91 ILAVA 95
IL+ A
Sbjct: 475 ILSAA 479
>UNIPROTKB|P06710 [details] [associations]
symbol:dnaX species:83333 "Escherichia coli K-12"
[GO:0006260 "DNA replication" evidence=IEA;IMP] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IDA] [GO:0043846 "DNA
polymerase III, clamp loader complex" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0030337 "DNA polymerase
processivity factor activity" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006200 "ATP catabolic process"
evidence=IDA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] UniProt:P06710 InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR021029 InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170
PRINTS:PR00300 SMART:SM00382 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 EMBL:U82664 EMBL:X04487
EMBL:M38777 GO:GO:0003887 eggNOG:COG2812 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 EMBL:X04275 PIR:A25549 RefSeq:NP_415003.1
RefSeq:YP_488761.1 PDB:1JR3 PDB:1NJF PDB:1NJG PDB:1XXH PDB:1XXI
PDB:2AYA PDB:3GLF PDB:3GLG PDB:3GLH PDB:3GLI PDBsum:1JR3
PDBsum:1NJF PDBsum:1NJG PDBsum:1XXH PDBsum:1XXI PDBsum:2AYA
PDBsum:3GLF PDBsum:3GLG PDBsum:3GLH PDBsum:3GLI
ProteinModelPortal:P06710 SMR:P06710 DIP:DIP-9464N IntAct:P06710
MINT:MINT-1222776 PRIDE:P06710 EnsemblBacteria:EBESCT00000003686
EnsemblBacteria:EBESCT00000015762 GeneID:12930852 GeneID:945105
KEGG:ecj:Y75_p0457 KEGG:eco:b0470 PATRIC:32116097 EchoBASE:EB0241
EcoGene:EG10245 HOGENOM:HOG000083934 OMA:VQLYYQT
ProtClustDB:PRK07994 BioCyc:EcoCyc:EG10245-MONOMER
BioCyc:EcoCyc:MONOMER0-2383 BioCyc:ECOL316407:JW0459-MONOMER
BindingDB:P06710 EvolutionaryTrace:P06710 Genevestigator:P06710
GO:GO:0043846 GO:GO:0030337 InterPro:IPR022001 Pfam:PF12168
Length = 643
Score = 162 (62.1 bits), Expect = 5.7e-09, P = 5.7e-09
Identities = 54/235 (22%), Positives = 103/235 (43%)
Query: 46 KYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLY-GPPGTGKTSTILAVARKLYGAQYH 104
K+RPQ+ ADV ++ + S R+ H L+ G G GKTS +A+ L +
Sbjct: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL-NCETG 67
Query: 105 NMILELNASDD-------RGIDVV------RQQIQDFAST-QSFSFG-VKASVKLVLLDE 149
D+ R +D++ R +++D + + + K+ L+DE
Sbjct: 68 ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDE 127
Query: 150 ADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERL 209
+++ + AL + +E+ ++ +F L K+ + SRC +F L+ + +L
Sbjct: 128 VHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQL 187
Query: 210 KHVIEAEGLDVTEGGLAALVRLCNGDMRKALNIL-QSTHMASQQITEEAVYLCTG 263
+H++ E + L L R G +R AL++ Q+ Q++ +AV G
Sbjct: 188 EHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242
>TAIR|locus:2121934 [details] [associations]
symbol:AT4G24790 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0009360 "DNA polymerase III complex"
evidence=IEA] InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 GO:GO:0005524 EMBL:CP002687
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887 GO:GO:0009360
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 IPI:IPI00532502
RefSeq:NP_001119046.1 RefSeq:NP_194210.2 UniGene:At.54505
ProteinModelPortal:F4JRP8 SMR:F4JRP8 PRIDE:F4JRP8
EnsemblPlants:AT4G24790.1 EnsemblPlants:AT4G24790.2 GeneID:828581
KEGG:ath:AT4G24790 OMA:TWLTVAL Uniprot:F4JRP8
Length = 857
Score = 163 (62.4 bits), Expect = 6.6e-09, P = 6.6e-09
Identities = 56/268 (20%), Positives = 119/268 (44%)
Query: 13 DEDENQNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSEN 72
D +E L NG++ +V+ + ++ + +K+RP+S ++ +V +
Sbjct: 212 DVEEYPLLPGNGNGESDVVTPSH-EVLSRSLSQKFRPKSFDELVGQEVVVKCLLSTILRG 270
Query: 73 RLPHLLLY-GPPGTGKTST--ILAVARKLYGAQYHNMILELNAS-----DDRGIDVVRQQ 124
R+ + L+ GP GTGKTST I A A H+ L + RG DV+
Sbjct: 271 RITSVYLFHGPRGTGKTSTSKIFAAALNCLSQAAHSRPCGLCSECKSYFSGRGRDVMETD 330
Query: 125 ---------IQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFA 175
++ + S V + K+ ++DE + ++ L ++ +++++ F
Sbjct: 331 SGKLNRPSYLRSLIKSASLP-PVSSRFKVFIIDECQLLCQETWGTLLNSLDNFSQHSVFI 389
Query: 176 LICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGD 235
L+ +++ K+ + SR ++ F+ + ++ +L + EG+D +G + + +G
Sbjct: 390 LVTSELEKLPRNVLSRSQKYHFSKVCDADISTKLAKICIEEGIDFDQGAVDFIASKSDGS 449
Query: 236 MRKALNILQSTHMASQQITEEAVYLCTG 263
+R A +L + ++IT Y G
Sbjct: 450 LRDAEIMLDQLSLLGKRITTSLAYKLIG 477
>TAIR|locus:504956441 [details] [associations]
symbol:RFC1 "replication factor C1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003689
"DNA clamp loader activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0031935
"regulation of chromatin silencing" evidence=IMP] [GO:0051570
"regulation of histone H3-K9 methylation" evidence=IMP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0007126
"meiosis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0000712 "resolution of meiotic recombination intermediates"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR010372 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF06144 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005524 GO:GO:0009737 GO:GO:0007126 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006260 GO:GO:0006974 GO:GO:0051570
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003689
GO:GO:0003887 EMBL:AL589883 HSSP:P26996 GO:GO:0009360
SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 eggNOG:COG5275 OMA:KLRMDER
GO:GO:0031935 EMBL:BT014965 IPI:IPI00543426 RefSeq:NP_680188.1
UniGene:At.45635 ProteinModelPortal:Q9C587 SMR:Q9C587 STRING:Q9C587
PaxDb:Q9C587 PRIDE:Q9C587 EnsemblPlants:AT5G22010.1 GeneID:832261
KEGG:ath:AT5G22010 TAIR:At5g22010 HOGENOM:HOG000085054
InParanoid:Q9C587 PhylomeDB:Q9C587 ProtClustDB:CLSN2690182
Genevestigator:Q9C587 Uniprot:Q9C587
Length = 956
Score = 148 (57.2 bits), Expect = 9.1e-09, Sum P(2) = 9.1e-09
Identities = 51/184 (27%), Positives = 92/184 (50%)
Query: 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG---IDVVR-------QQIQ 126
+LL G PG GKT++ V++ L G Q +E+NASD RG ++ + ++
Sbjct: 396 VLLSGTPGIGKTTSAKLVSQML-GFQ----AVEVNASDSRGKANSNIAKGIGGSNANSVK 450
Query: 127 DFASTQSFS--FGVKASVKLVLL-DEADAMTKDAQFALRRVIEKYTKNTRFALIC---NQ 180
+ + ++ + F K VL+ DE D M+ + + +I K ++ +IC ++
Sbjct: 451 ELVNNEAMAANFDRSKHPKTVLIMDEVDGMSAGDRGGVADLIASI-KISKIPIICICNDR 509
Query: 181 VNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKAL 240
++ + +L + C + + +RL H+ +AEGL++ E L L NGD+R A+
Sbjct: 510 YSQKLKSLVNYCLPLNYRKPTKQQMAKRLMHIAKAEGLEINEIALEELAERVNGDIRLAV 569
Query: 241 NILQ 244
N LQ
Sbjct: 570 NQLQ 573
Score = 59 (25.8 bits), Expect = 9.1e-09, Sum P(2) = 9.1e-09
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 22 PKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIV 62
P GKN I+ + PW EKYRP+ ++ ++ +V
Sbjct: 327 PPAKGKNKIIE------TSLPWTEKYRPKVPNEIVGNQSLV 361
>POMBASE|SPBC23E6.07c [details] [associations]
symbol:rfc1 "DNA replication factor C complex subunit
Rfc1" species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IGI] [GO:0006272 "leading strand elongation" evidence=ISO]
[GO:0031389 "Rad17 RFC-like complex" evidence=TAS] [GO:0031390
"Ctf18 RFC-like complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like
complex" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0003689 "DNA clamp loader activity" evidence=IC]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
InterPro:IPR012178 InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 InterPro:IPR001357
PomBase:SPBC23E6.07c Pfam:PF00533 GO:GO:0005524 GO:GO:0005730
GO:GO:0051301 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0007049
GO:GO:0000790 GO:GO:0043596 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0003689 GO:GO:0031390 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389 KO:K10754
eggNOG:COG5275 EMBL:AB027931 PIR:T39941 RefSeq:NP_596607.1
ProteinModelPortal:O60182 IntAct:O60182 STRING:O60182
EnsemblFungi:SPBC23E6.07c.1 GeneID:2540426 KEGG:spo:SPBC23E6.07c
HOGENOM:HOG000164552 OMA:KLRMDER OrthoDB:EOG4WDHM8 NextBio:20801553
Uniprot:O60182
Length = 934
Score = 161 (61.7 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 58/192 (30%), Positives = 97/192 (50%)
Query: 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFS- 135
+LL GPPG GKT+ VA KL G Y +LELNASD R ++ +Q+ +QS +
Sbjct: 412 VLLSGPPGIGKTTAAHLVA-KLEG--YD--VLELNASDTRSKRLLDEQLFGVTDSQSLAG 466
Query: 136 -FGVKASV------KLVLL-DEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPA 187
FG KA+ +LVL+ DE D M+ + + + + K + +IC ++ P
Sbjct: 467 YFGTKANPVDMAKSRLVLIMDEIDGMSSGDRGGVGQ-LNMIIKKSMIPIICICNDRAHPK 525
Query: 188 LQ--SRCT-RFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQ 244
L+ R T RF + + R+ + EGL ++ + LV+ DMR+ +N+L
Sbjct: 526 LRPLDRTTFDLRFRRPDANSMRSRIMSIAYREGLKLSPQAVDQLVQGTQSDMRQIINLLS 585
Query: 245 STHMASQQITEE 256
+ ++ ++T +
Sbjct: 586 TYKLSCSEMTPQ 597
>TIGR_CMR|SPO_2741 [details] [associations]
symbol:SPO_2741 "DNA polymerase III, delta prime subunit,
putative" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 SMART:SM00382
GO:GO:0000166 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0017111
KO:K02341 HOGENOM:HOG000142449 RefSeq:YP_167948.1
ProteinModelPortal:Q5LPV8 GeneID:3194106 KEGG:sil:SPO2741
PATRIC:23378901 OMA:NLDRKQT ProtClustDB:PRK07471 Uniprot:Q5LPV8
Length = 373
Score = 145 (56.1 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 45/171 (26%), Positives = 79/171 (46%)
Query: 82 PPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS 141
PP T VAR++ + + +D+G ++D F FG+ A+
Sbjct: 84 PPDTLDIDPEHPVARRMQAGAEPGLAAITRSLNDQGRLRAEIVVEDVRKLGRF-FGLSAA 142
Query: 142 V---KLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFA 198
++V++D AD M A AL +++E+ T L+ +Q ++++P ++SRC R
Sbjct: 143 DGGRRVVIVDSADEMNTSAANALLKMLEEPPARTTLLLVSHQPSRLLPTIRSRCRTLRLT 202
Query: 199 PLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA 249
PL P + L+ G +V LAAL +G + +AL +L +A
Sbjct: 203 PLSPADMQSALEQA--GAGTEVMPEHLAALA---SGSVGRALRLLNLDGLA 248
Score = 49 (22.3 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 72 NRLPH-LLLYGPPGTGKTSTILAVARKL 98
+RL H LL GP G GK + +AR L
Sbjct: 40 DRLHHGWLLTGPEGVGKATLAWRIARFL 67
>GENEDB_PFALCIPARUM|PFB0895c [details] [associations]
symbol:PFB0895c "replication factor C subunit 1,
putative" species:5833 "Plasmodium falciparum" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524
GO:GO:0006260 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003689 EMBL:AE001362 HSSP:P26996 SUPFAM:SSF48019
GO:GO:0005663 KO:K10754 PIR:D71603 RefSeq:XP_001349697.1
ProteinModelPortal:O96271 PRIDE:O96271
EnsemblProtists:PFB0895c:mRNA GeneID:812779 KEGG:pfa:PFB0895c
EuPathDB:PlasmoDB:PF3D7_0219600 HOGENOM:HOG000284296 OMA:YNYEKKD
ProtClustDB:CLSZ2733780 Uniprot:O96271
Length = 904
Score = 162 (62.1 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 68/236 (28%), Positives = 108/236 (45%)
Query: 18 QNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHL 77
+ +PK+ N +V IK W+ + + + + T +
Sbjct: 355 EKYRPKN--LNELVGNNQNVIKLQNWLASWEDVCIKGIK--KPAQKTFRGIFENVNARCA 410
Query: 78 LLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFG 137
LL GP G GKT+T V+ A +N+I E NASD+R V ++I + A T +S
Sbjct: 411 LLSGPAGIGKTTTAKIVSE----ASGYNVI-EFNASDERNKAAV-EKISEMA-TGGYSIM 463
Query: 138 VKASVKL----VLLDEADAMT---KDAQFALRRVIEKYTKNTRFALICN--QVNKIIPAL 188
+ KL +++DE D M+ K A+ ++IEK TK ICN Q NK+ L
Sbjct: 464 SLNNRKLTKTCIIMDEVDGMSSGDKGGSTAILKLIEK-TK-CPIICICNDRQNNKM-RTL 520
Query: 189 QSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQ 244
++C +F+ + V +RL + + EG+ + L L GD+R+ LN LQ
Sbjct: 521 ANKCYDLKFSMPQKNSVVKRLLEICKKEGIMMEPNALELLWESTCGDIRQMLNTLQ 576
Score = 38 (18.4 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 16/73 (21%), Positives = 30/73 (41%)
Query: 231 LCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFK--- 287
L D+ +A+ I++ + + +TE C P +++ L SF +
Sbjct: 773 LHKADVNQAIQIMEEYSITREMVTENLP--CLRLPNQENLYDKLDTKLKSSFTRLYNSSH 830
Query: 288 --RISEMKMRKGL 298
+I M+KGL
Sbjct: 831 VIKIDPNSMKKGL 843
>UNIPROTKB|O96271 [details] [associations]
symbol:PFB0895c "Replication factor C subunit 1, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524
GO:GO:0006260 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003689 EMBL:AE001362 HSSP:P26996 SUPFAM:SSF48019
GO:GO:0005663 KO:K10754 PIR:D71603 RefSeq:XP_001349697.1
ProteinModelPortal:O96271 PRIDE:O96271
EnsemblProtists:PFB0895c:mRNA GeneID:812779 KEGG:pfa:PFB0895c
EuPathDB:PlasmoDB:PF3D7_0219600 HOGENOM:HOG000284296 OMA:YNYEKKD
ProtClustDB:CLSZ2733780 Uniprot:O96271
Length = 904
Score = 162 (62.1 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 68/236 (28%), Positives = 108/236 (45%)
Query: 18 QNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHL 77
+ +PK+ N +V IK W+ + + + + T +
Sbjct: 355 EKYRPKN--LNELVGNNQNVIKLQNWLASWEDVCIKGIK--KPAQKTFRGIFENVNARCA 410
Query: 78 LLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFG 137
LL GP G GKT+T V+ A +N+I E NASD+R V ++I + A T +S
Sbjct: 411 LLSGPAGIGKTTTAKIVSE----ASGYNVI-EFNASDERNKAAV-EKISEMA-TGGYSIM 463
Query: 138 VKASVKL----VLLDEADAMT---KDAQFALRRVIEKYTKNTRFALICN--QVNKIIPAL 188
+ KL +++DE D M+ K A+ ++IEK TK ICN Q NK+ L
Sbjct: 464 SLNNRKLTKTCIIMDEVDGMSSGDKGGSTAILKLIEK-TK-CPIICICNDRQNNKM-RTL 520
Query: 189 QSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQ 244
++C +F+ + V +RL + + EG+ + L L GD+R+ LN LQ
Sbjct: 521 ANKCYDLKFSMPQKNSVVKRLLEICKKEGIMMEPNALELLWESTCGDIRQMLNTLQ 576
Score = 38 (18.4 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 16/73 (21%), Positives = 30/73 (41%)
Query: 231 LCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFK--- 287
L D+ +A+ I++ + + +TE C P +++ L SF +
Sbjct: 773 LHKADVNQAIQIMEEYSITREMVTENLP--CLRLPNQENLYDKLDTKLKSSFTRLYNSSH 830
Query: 288 --RISEMKMRKGL 298
+I M+KGL
Sbjct: 831 VIKIDPNSMKKGL 843
>TIGR_CMR|BA_0028 [details] [associations]
symbol:BA_0028 "DNA polymerase III, delta prime subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR004622 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006260
GO:GO:0008408 GO:GO:0003887 KO:K02341 TIGRFAMs:TIGR00678
HOGENOM:HOG000192593 RefSeq:NP_842598.1 RefSeq:YP_016633.2
RefSeq:YP_026317.1 ProteinModelPortal:Q81W10 DNASU:1085794
EnsemblBacteria:EBBACT00000013310 EnsemblBacteria:EBBACT00000013749
EnsemblBacteria:EBBACT00000019869 GeneID:1085794 GeneID:2816307
GeneID:2852708 KEGG:ban:BA_0028 KEGG:bar:GBAA_0028 KEGG:bat:BAS0030
OMA:RIESGNH ProtClustDB:PRK08058 BioCyc:BANT260799:GJAJ-37-MONOMER
BioCyc:BANT261594:GJ7F-38-MONOMER Uniprot:Q81W10
Length = 327
Score = 151 (58.2 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 67/253 (26%), Positives = 122/253 (48%)
Query: 70 SENRLPHL-LLYGPPGTGKTSTILAVARKLYGAQYHNM----IL------------ELNA 112
++ R+ H LL G GTGK +T + +A+ +Q + + + L+
Sbjct: 24 AKERISHAYLLEGEKGTGKFATAIQMAKSFLCSQRNRVEPCHVCTNCKRIDSGNHPNLHI 83
Query: 113 SDDRGIDVVRQQIQDFASTQSFS-FGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKN 171
G+ + +QQI D + FS G++A+ K+ +++ AD MT +A AL + +E+ + +
Sbjct: 84 VKPDGLSIKKQQIHDLQ--EEFSKTGLEANKKVYIIEHADRMTANAANALLKFLEEPSSD 141
Query: 172 TRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRL 231
T L+ Q ++I+ + SRC F PL P TE L ++ EG+ V+ LAA +L
Sbjct: 142 TTAILLTEQSHQILNTILSRCQVVTFRPL-P---TESLIRRLQDEGITVSLSTLAA--QL 195
Query: 232 CNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISE 291
N +AL + A Q + LC L KD + S + + E + F +
Sbjct: 196 TNS-FDEALTLCNDEWFA--QARALVIKLCEA--LEKD--KASIFFVQEKWGKHFGE--K 246
Query: 292 MKMRKGLALVDIV 304
++++GL ++ ++
Sbjct: 247 EQLQQGLDMLLLI 259
>GENEDB_PFALCIPARUM|PF11_0117 [details] [associations]
symbol:PF11_0117 "replication factor C subunit
5, putative" species:5833 "Plasmodium falciparum" [GO:0006260 "DNA
replication" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006271 "DNA strand elongation involved
in DNA replication" evidence=ISS] KO:K10756 EMBL:AE014186
GO:GO:0006271 GO:GO:0005663 RefSeq:XP_001347790.1
ProteinModelPortal:Q8IIQ1 EnsemblProtists:PF11_0117:mRNA
GeneID:810666 KEGG:pfa:PF11_0117 EuPathDB:PlasmoDB:PF3D7_1111100
HOGENOM:HOG000282249 OMA:CIMALEM ProtClustDB:CLSZ2432864
Uniprot:Q8IIQ1
Length = 349
Score = 140 (54.3 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 31/102 (30%), Positives = 54/102 (52%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKY PQS+ ++ H+DI + + +L+ LPH++ YG PG GK++ I + ++++ +
Sbjct: 2 WLEKYSPQSIDELTIHKDITERLRKLSRHKDLPHIIFYGAPGGGKSTRINCLIKEIFKDE 61
Query: 103 YHNMILEL--NASDDRGIDVVRQQIQDFASTQSFSFGVKASV 142
E NA + I+VV+ Q F G K +
Sbjct: 62 KIIRRPECITNAENKININVVQSNYH--LELQCFELGNKDKI 101
Score = 114 (45.2 bits), Expect = 0.00055, P = 0.00055
Identities = 38/156 (24%), Positives = 73/156 (46%)
Query: 101 AQYHNMI--LELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQ 158
+ YH + EL D + + +++ + S+ SF F ++ + +A+ +++ AQ
Sbjct: 84 SNYHLELQCFELGNKDKIIVQSIIKELCSYKSSASF-FSKTPMYRIFVFKDAEFLSEGAQ 142
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPL-EPVHVTERLKHVIEAEG 217
LRR +E Y +N R L ++KII L+SRC R PL + L+++ + E
Sbjct: 143 AGLRRTLETYIRNARVILHLEHLSKIIEPLKSRCICIR-VPLPSEEEIYSVLQNICKQEN 201
Query: 218 LDV---TEGGLAALVRLCNGDMRKALNILQSTHMAS 250
+ T L+ ++RK + L+ + A+
Sbjct: 202 VSPSFSTYEYFQTLINTHGRNLRKCIMALEMSVYAN 237
Score = 48 (22.0 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 29/99 (29%), Positives = 43/99 (43%)
Query: 181 VNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKAL 240
V II L S + F P++ R+ +AE L +EG A L R +R A
Sbjct: 103 VQSIIKELCSYKSSASFFSKTPMY---RIFVFKDAEFL--SEGAQAGLRRTLETYIRNAR 157
Query: 241 NILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLN 279
IL H++ ++ +C PLP + E+I L N
Sbjct: 158 VILHLEHLSKIIEPLKSRCICIRVPLPSE-EEIYSVLQN 195
>UNIPROTKB|Q8IIQ1 [details] [associations]
symbol:PF11_0117 "Replication factor C subunit 5, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=ISS] KO:K10756 EMBL:AE014186
GO:GO:0006271 GO:GO:0005663 RefSeq:XP_001347790.1
ProteinModelPortal:Q8IIQ1 EnsemblProtists:PF11_0117:mRNA
GeneID:810666 KEGG:pfa:PF11_0117 EuPathDB:PlasmoDB:PF3D7_1111100
HOGENOM:HOG000282249 OMA:CIMALEM ProtClustDB:CLSZ2432864
Uniprot:Q8IIQ1
Length = 349
Score = 140 (54.3 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 31/102 (30%), Positives = 54/102 (52%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKY PQS+ ++ H+DI + + +L+ LPH++ YG PG GK++ I + ++++ +
Sbjct: 2 WLEKYSPQSIDELTIHKDITERLRKLSRHKDLPHIIFYGAPGGGKSTRINCLIKEIFKDE 61
Query: 103 YHNMILEL--NASDDRGIDVVRQQIQDFASTQSFSFGVKASV 142
E NA + I+VV+ Q F G K +
Sbjct: 62 KIIRRPECITNAENKININVVQSNYH--LELQCFELGNKDKI 101
Score = 114 (45.2 bits), Expect = 0.00055, P = 0.00055
Identities = 38/156 (24%), Positives = 73/156 (46%)
Query: 101 AQYHNMI--LELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQ 158
+ YH + EL D + + +++ + S+ SF F ++ + +A+ +++ AQ
Sbjct: 84 SNYHLELQCFELGNKDKIIVQSIIKELCSYKSSASF-FSKTPMYRIFVFKDAEFLSEGAQ 142
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPL-EPVHVTERLKHVIEAEG 217
LRR +E Y +N R L ++KII L+SRC R PL + L+++ + E
Sbjct: 143 AGLRRTLETYIRNARVILHLEHLSKIIEPLKSRCICIR-VPLPSEEEIYSVLQNICKQEN 201
Query: 218 LDV---TEGGLAALVRLCNGDMRKALNILQSTHMAS 250
+ T L+ ++RK + L+ + A+
Sbjct: 202 VSPSFSTYEYFQTLINTHGRNLRKCIMALEMSVYAN 237
Score = 48 (22.0 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 29/99 (29%), Positives = 43/99 (43%)
Query: 181 VNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKAL 240
V II L S + F P++ R+ +AE L +EG A L R +R A
Sbjct: 103 VQSIIKELCSYKSSASFFSKTPMY---RIFVFKDAEFL--SEGAQAGLRRTLETYIRNAR 157
Query: 241 NILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLN 279
IL H++ ++ +C PLP + E+I L N
Sbjct: 158 VILHLEHLSKIIEPLKSRCICIRVPLPSE-EEIYSVLQN 195
>UNIPROTKB|O83970 [details] [associations]
symbol:TP_1005 "DNA polymerase III, subunits gamma and tau
(DnaH)" species:243276 "Treponema pallidum subsp. pallidum str.
Nichols" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001270 InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300
SMART:SM00382 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 GO:GO:0003887 EMBL:AE000520 GenomeReviews:AE000520_GR
GO:GO:0009360 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
HSSP:P06710 PIR:G71254 RefSeq:NP_219442.1 ProteinModelPortal:O83970
IntAct:O83970 GeneID:2610796 KEGG:tpa:TP1005 PATRIC:20532135
OMA:ANAYIFS ProtClustDB:PRK06647 Uniprot:O83970
Length = 572
Score = 152 (58.6 bits), Expect = 6.4e-08, P = 6.4e-08
Identities = 66/277 (23%), Positives = 114/277 (41%)
Query: 46 KYRPQSLADVAAHRDIVDTIDRLTSENRL-PHLLLYGPPGTGKTSTILAVARKLYGAQYH 104
+YRPQ V + +V T+ + EN++ P L GP G GKTS +A+ L Q
Sbjct: 9 RYRPQRFQHVLGQKFVVATLQKSLEENKVSPAYLFSGPHGCGKTSCARILAKALNCVQRE 68
Query: 105 ------------------NM-ILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLV 145
N+ ++E++ + G+ VRQ ++ G + K+
Sbjct: 69 ASEPCGECPSCREIATGTNLNVIEIDGASHTGVGDVRQIKEEILFPPH---GTR--YKVF 123
Query: 146 LLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHV 205
++DE ++ A AL + IE+ F +V++I ++SRC +F F ++ +
Sbjct: 124 IIDEVHMLSNSAFNALLKTIEEPPPYVVFIFATTEVHRIPATVKSRCQQFHFRLVDTQTL 183
Query: 206 TERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNP 265
L + + V +G L+ + R G MR A + T V C G
Sbjct: 184 VCALAQAAQQMQIAVEDGVLSWIARESAGSMRDAYTLFDQT-----------VVSCAGPV 232
Query: 266 LPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVD 302
++I++ + ++S A F R L LVD
Sbjct: 233 TLENIQKKLGLMTDDSLAALFSHCCRKDARAALELVD 269
>UNIPROTKB|F1RG33 [details] [associations]
symbol:CHTF18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0009360 "DNA
polymerase III complex" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR010372
Pfam:PF00004 Pfam:PF06144 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887
GeneTree:ENSGT00550000075029 GO:GO:0009360 EMBL:FP016225
Ensembl:ENSSSCT00000008778 Uniprot:F1RG33
Length = 978
Score = 106 (42.4 bits), Expect = 6.7e-08, Sum P(3) = 6.7e-08
Identities = 33/91 (36%), Positives = 48/91 (52%)
Query: 78 LLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFS-F 136
LL GPPG GKT+ +AR A Y ++E+NASDDR + R +I+ A+TQ S
Sbjct: 372 LLCGPPGLGKTTLAHVIARH---AGY--CVVEMNASDDRSPEAFRTRIE--AATQMESVL 424
Query: 137 GVKASVKLVLLDEADAMTKDAQFALRRVIEK 167
G +++DE D A L V+++
Sbjct: 425 GSGGRPNCLVIDEIDGAPTAAINVLLSVLDR 455
Score = 100 (40.3 bits), Expect = 6.7e-08, Sum P(3) = 6.7e-08
Identities = 23/72 (31%), Positives = 35/72 (48%)
Query: 177 ICN-QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGD 235
ICN Q + L+ + F P P +T+RL+ + + G+ G LAAL + D
Sbjct: 490 ICNDQFAPSLRQLKPQALLLHFPPTLPSRLTQRLQEISQQRGMQADPGALAALCEKTDND 549
Query: 236 MRKALNILQSTH 247
+R +N LQ H
Sbjct: 550 IRACINALQFLH 561
Score = 37 (18.1 bits), Expect = 6.7e-08, Sum P(3) = 6.7e-08
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 5 ETVSLMDFDEDENQNLKPKDNGKNVIVSGT 34
E ++F DE ++L P D+ I+ T
Sbjct: 108 EAARRLNFRPDEMEDLLPPDSPTRDIILPT 137
>DICTYBASE|DDB_G0285961 [details] [associations]
symbol:rfc1 "replication factor C subunit 1"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003689 "DNA clamp loader activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006298 "mismatch repair" evidence=ISS]
[GO:0006272 "leading strand elongation" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 dictyBase:DDB_G0285961
Pfam:PF00533 GO:GO:0005524 GO:GO:0005634 GenomeReviews:CM000153_GR
GO:GO:0006355 GO:GO:0006351 GO:GO:0006298 EMBL:AAFI02000082
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 HSSP:P38630
GO:GO:0003689 eggNOG:COG0272 GO:GO:0006272 SUPFAM:SSF48019
GO:GO:0005663 RefSeq:XP_638011.1 ProteinModelPortal:Q54MH9
STRING:Q54MH9 EnsemblProtists:DDB0232230 GeneID:8625362
KEGG:ddi:DDB_G0285961 KO:K10754 OMA:IIELSTW Uniprot:Q54MH9
Length = 1401
Score = 161 (61.7 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 59/242 (24%), Positives = 114/242 (47%)
Query: 43 WVEKYRPQSLADVAAHRDIVDT----IDRLTSE-----NRLPHLLLYGPPGTGKTSTILA 93
WVEKYRP+ + D+ + I +D+ S ++ +LL GPPG GKTS L
Sbjct: 851 WVEKYRPKVIEDIVGNPGIFQEFGKWLDQWNSTAPRDASKKNAVLLSGPPGIGKTSAALL 910
Query: 94 VARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFS--FG---------VKASV 142
+ ++ G + +ELNASD R +++ + + Q+ + FG V+A+
Sbjct: 911 ICKQK-GFE----AIELNASDARSKSEIKRLLSGVSDNQNITKFFGTTNQDTGKDVQANK 965
Query: 143 KL---VLLDEADAMTKDA-QFALRRVIEKYTKNTR-FALICNQV-NKIIPALQSRCTRFR 196
K+ ++LDE D + ++ + + +I K+ F +CN + + +L++ C +
Sbjct: 966 KIKTAIILDEIDGSSGNSDRGGIAEIIGLIKKSKMPFICLCNDYYSSKVTSLRNHCMDLK 1025
Query: 197 FAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEE 256
V+ RL + + EG+ V+ + + + D+R+++N LQ + + +
Sbjct: 1026 LRKPTLNQVSSRLLAIAKHEGMKVSSYMIEKVYTSSHSDIRQSINTLQMMSRSKRDYNND 1085
Query: 257 AV 258
V
Sbjct: 1086 NV 1087
Score = 39 (18.8 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 16 ENQNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQS 51
EN++ K K+ K++ + T + K+S +K +P S
Sbjct: 100 ENKSPKKKEPSKSIDL--TSDEDKSSSEEDKKKPSS 133
>UNIPROTKB|F1NEP9 [details] [associations]
symbol:RFC1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524 GO:GO:0006260
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 EMBL:AADN02015876 EMBL:AADN02015877 EMBL:AADN02015878
EMBL:AADN02015879 EMBL:AADN02015880 IPI:IPI00574416
Ensembl:ENSGALT00000023118 ArrayExpress:F1NEP9 Uniprot:F1NEP9
Length = 1147
Score = 143 (55.4 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 55/217 (25%), Positives = 103/217 (47%)
Query: 78 LLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDF---ASTQSF 134
LL GPPG GKT+T V ++L G Y +ELNASD R + +++ + + S + F
Sbjct: 644 LLSGPPGVGKTTTASLVCKEL-GYSY----VELNASDTRSKNSLKEVVAESLNNTSIKDF 698
Query: 135 SFGVKASVK---LVLLDEADAMT-KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQS 190
G +SV ++++DE D M + + ++ +I ++T+ +IC ++ P ++S
Sbjct: 699 CSGTSSSVSGKHVLIMDEVDGMAGNEDRGGIQELIG-LIRHTKVPIICMCNDRNHPKIRS 757
Query: 191 R---CTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH 247
C RF + + + EGL + + ++ N D+R+ L+ L
Sbjct: 758 LVHYCFDLRFQRPRLEQIKGAMMSIAFKEGLKIPPPAMNEIILAANQDIRQVLHNLNMWC 817
Query: 248 MASQQIT-EEAVYLCTGNPLPKDIEQISYWLLNESFA 283
+ +T +EA + KDI+ + ++ + FA
Sbjct: 818 AKDKSLTYDEAK--TDASRAKKDIKLGPFDVVRKVFA 852
Score = 56 (24.8 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 3 EAETVS-LMDFDEDENQNLK-PKDNGKNVIVSGTPPDIKASPWVEKYRPQSL 52
EA V L DF+ + + PK G N + + + WV+KY+P SL
Sbjct: 543 EATAVQKLKDFEHQTVEKKEAPKPKG-NFVSERSEDRTETLLWVDKYKPVSL 593
Score = 52 (23.4 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 30/102 (29%), Positives = 44/102 (43%)
Query: 7 VSLMDFDED---ENQNLKPKDNGKNVI-VSGTPP----DIKASPWVEKYRPQSLADVAAH 58
VS D ++D + +LKPK+NG + I GT D+K + P L +A
Sbjct: 106 VSETDEEDDFVSKRISLKPKENGTSAISCPGTATVKKGDVKPQAKTKPLSPVKLTPTSA- 164
Query: 59 RDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI--LAVARKL 98
D T SE +L P + ST+ A+AR+L
Sbjct: 165 LDYFGTRSVQRSEKKLV-ASKRKEPSESRDSTLDDEAIARQL 205
>UNIPROTKB|E1C339 [details] [associations]
symbol:RFC1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524 GO:GO:0006260
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 OMA:GQINFPG EMBL:AADN02015876 EMBL:AADN02015877
EMBL:AADN02015878 EMBL:AADN02015879 EMBL:AADN02015880
IPI:IPI00683437 Ensembl:ENSGALT00000029582 ArrayExpress:E1C339
Uniprot:E1C339
Length = 1153
Score = 143 (55.4 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 55/217 (25%), Positives = 103/217 (47%)
Query: 78 LLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDF---ASTQSF 134
LL GPPG GKT+T V ++L G Y +ELNASD R + +++ + + S + F
Sbjct: 648 LLSGPPGVGKTTTASLVCKEL-GYSY----VELNASDTRSKNSLKEVVAESLNNTSIKDF 702
Query: 135 SFGVKASVK---LVLLDEADAMT-KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQS 190
G +SV ++++DE D M + + ++ +I ++T+ +IC ++ P ++S
Sbjct: 703 CSGTSSSVSGKHVLIMDEVDGMAGNEDRGGIQELIG-LIRHTKVPIICMCNDRNHPKIRS 761
Query: 191 R---CTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH 247
C RF + + + EGL + + ++ N D+R+ L+ L
Sbjct: 762 LVHYCFDLRFQRPRLEQIKGAMMSIAFKEGLKIPPPAMNEIILAANQDIRQVLHNLNMWC 821
Query: 248 MASQQIT-EEAVYLCTGNPLPKDIEQISYWLLNESFA 283
+ +T +EA + KDI+ + ++ + FA
Sbjct: 822 AKDKSLTYDEAK--TDASRAKKDIKLGPFDVVRKVFA 856
Score = 56 (24.8 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 3 EAETVS-LMDFDEDENQNLK-PKDNGKNVIVSGTPPDIKASPWVEKYRPQSL 52
EA V L DF+ + + PK G N + + + WV+KY+P SL
Sbjct: 547 EATAVQKLKDFEHQTVEKKEAPKPKG-NFVSERSEDRTETLLWVDKYKPVSL 597
Score = 56 (24.8 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 31/104 (29%), Positives = 45/104 (43%)
Query: 7 VSLMDFDEDENQ-----NLKPKDNGKNVI-VSGTPP----DIKASPWVEKYRPQSLADVA 56
VS D DE+++ +LKPK+NG + I GT D+K + P L +
Sbjct: 106 VSETDLDEEDDFVSKRISLKPKENGTSAISCPGTATVKKGDVKPQAKTKPLSPVKLTPTS 165
Query: 57 AHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI--LAVARKL 98
A D T SE +L P + ST+ A+AR+L
Sbjct: 166 A-LDYFGTRSVQRSEKKLV-ASKRKEPSESRDSTLDDEAIARQL 207
>POMBASE|SPAC14C4.13 [details] [associations]
symbol:rad17 "RFC related checkpoint protein Rad17"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0007095 "mitotic G2 DNA
damage checkpoint" evidence=IMP] [GO:0031389 "Rad17 RFC-like
complex" evidence=TAS] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=IMP] [GO:0033314 "mitotic DNA replication checkpoint"
evidence=IMP] [GO:0003689 "DNA clamp loader activity" evidence=TAS]
InterPro:IPR003593 InterPro:IPR004582 InterPro:IPR018324
SMART:SM00382 PomBase:SPAC14C4.13 GO:GO:0005524 GO:GO:0007095
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006281 GO:GO:0000790
GO:GO:0017111 eggNOG:COG0470 GO:GO:0033314 GO:GO:0031573 KO:K06662
PANTHER:PTHR12172 TIGRFAMs:TIGR00602 EMBL:X91889 PIR:S60090
RefSeq:NP_594918.1 ProteinModelPortal:P50531 STRING:P50531
EnsemblFungi:SPAC14C4.13.1 GeneID:2541643 KEGG:spo:SPAC14C4.13
OMA:SLVENIC OrthoDB:EOG4WDHNC NextBio:20802736 GO:GO:0031389
Uniprot:P50531
Length = 606
Score = 119 (46.9 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 40/135 (29%), Positives = 71/135 (52%)
Query: 5 ETVSLMDFDEDENQNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDT 64
+ S+ D E++ + ++N K V ++ D + W EKY PQ AD+A H+ +
Sbjct: 36 KNASITDIHEEDIEAFSDEEN-KIVHLNNLKED-RFQLWFEKYIPQKAADLAVHKSKISA 93
Query: 65 IDR--LTS--ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDV 120
I + LT E+RL LL+ GP G GK++ + +A++L G +++I LN + + +
Sbjct: 94 IKQWMLTDSLESRL--LLICGPSGCGKSTAVQVLAKEL-G---YSLIEWLNPMNLK--EP 145
Query: 121 VRQQIQDFASTQSFS 135
Q+ + T+ FS
Sbjct: 146 SNQESDTLSLTEKFS 160
Score = 74 (31.1 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 191 RCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCN---GDMRKALNILQ 244
R T +F P+ P ++ + L ++ EG+ + L+ + +C+ GD+R A+N LQ
Sbjct: 266 RVTVLQFNPIAPTYMKKCLGSILRKEGVPKSPKLLSLVENICSASEGDLRSAINSLQ 322
>UNIPROTKB|E1B8Q4 [details] [associations]
symbol:CHTF18 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0017111 CTD:63922
KO:K11269 GeneTree:ENSGT00550000075029 OMA:TMLAYNL
EMBL:DAAA02057284 IPI:IPI00717859 RefSeq:NP_001179389.1
UniGene:Bt.60318 Ensembl:ENSBTAT00000026311 GeneID:517007
KEGG:bta:517007 NextBio:20872353 Uniprot:E1B8Q4
Length = 978
Score = 108 (43.1 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 33/91 (36%), Positives = 48/91 (52%)
Query: 78 LLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFS-F 136
LL GPPG GKT+ +AR A Y ++E+NASDDR + R +I+ A+TQ S
Sbjct: 372 LLCGPPGLGKTTLAHVIARH---AGY--CVVEMNASDDRSPEAFRTRIE--AATQMESVL 424
Query: 137 GVKASVKLVLLDEADAMTKDAQFALRRVIEK 167
G +++DE D A L V+++
Sbjct: 425 GAGGRPNCLVIDEIDGAPTAAINVLLSVLDR 455
Score = 90 (36.7 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 24/84 (28%), Positives = 39/84 (46%)
Query: 177 ICNQ-VNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGD 235
ICN + L+ + F P P + +RL+ + G+ G LAAL + D
Sbjct: 490 ICNDPFAPSLRQLKQQALLLHFPPTLPSRLMQRLQEISLRRGMRADPGALAALCEKTDND 549
Query: 236 MRKALNILQSTHMASQ-QITEEAV 258
+R +N LQ H Q +++ +AV
Sbjct: 550 IRACINALQFLHRRGQRELSVQAV 573
>UNIPROTKB|I3LC39 [details] [associations]
symbol:CHTF18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0017111
GeneTree:ENSGT00550000075029 OMA:TMLAYNL EMBL:FP016225
Ensembl:ENSSSCT00000031631 Uniprot:I3LC39
Length = 1007
Score = 106 (42.4 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 33/91 (36%), Positives = 48/91 (52%)
Query: 78 LLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFS-F 136
LL GPPG GKT+ +AR A Y ++E+NASDDR + R +I+ A+TQ S
Sbjct: 404 LLCGPPGLGKTTLAHVIARH---AGY--CVVEMNASDDRSPEAFRTRIE--AATQMESVL 456
Query: 137 GVKASVKLVLLDEADAMTKDAQFALRRVIEK 167
G +++DE D A L V+++
Sbjct: 457 GSGGRPNCLVIDEIDGAPTAAINVLLSVLDR 487
Score = 89 (36.4 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 24/72 (33%), Positives = 34/72 (47%)
Query: 177 ICN-QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGD 235
ICN Q + L+ + F P P +T+RL+ E G+ G LAAL + D
Sbjct: 522 ICNDQFAPSLRQLKPQALLLHFPPTLPSRLTQRLQ---EQRGMQADPGALAALCEKTDND 578
Query: 236 MRKALNILQSTH 247
+R +N LQ H
Sbjct: 579 IRACINALQFLH 590
Score = 43 (20.2 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 5 ETVSLMDFDEDENQNLKPKDNG-KNVIVSG-TPPDIKASP 42
E ++F DE ++L P D+ +++I+ +PP + P
Sbjct: 145 EAARRLNFRPDEMEDLLPPDSPTRDIILPPPSPPSLSHFP 184
>TIGR_CMR|SO_2308 [details] [associations]
symbol:SO_2308 "ATPase, AAA family" species:211586
"Shewanella oneidensis MR-1" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0019538 "protein metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0017111
HOGENOM:HOG000017623 KO:K07478 OMA:HDEPDAF ProtClustDB:PRK13342
InterPro:IPR021886 Pfam:PF12002 HSSP:Q56313 RefSeq:NP_717903.2
ProteinModelPortal:Q8EER1 GeneID:1170033 KEGG:son:SO_2308
PATRIC:23524239 Uniprot:Q8EER1
Length = 443
Score = 145 (56.1 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 63/219 (28%), Positives = 100/219 (45%)
Query: 36 PDIKASPWVEKYRPQSLADVAAHRDIV---DTIDRLTSENRLPHLLLYGPPGTGKTSTIL 92
PD + P + RP+++A+ ++ + + R ++L+GPPGTGKT+
Sbjct: 10 PDFR--PLAARMRPRTIAEYIGQAHLLGEGQPLRQALEAGRAHSMMLWGPPGTGKTT--- 64
Query: 93 AVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADA 152
+A + A Y N +E ++ G+ +R I+ A + S G + L+ +DE
Sbjct: 65 -LAELI--AHYSNAHVERISAVTSGVKDIRGAIEQ-AQAIAQSRGQRT---LLFVDEVHR 117
Query: 153 MTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRF---RFAPLEPVHV-TER 208
K Q A IE T A N +I AL SR + R + E VH+ T+
Sbjct: 118 FNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSRARVYLIKRLSQDEIVHIITQA 177
Query: 209 LKHVIEAEG---LDVTEGGLAALVRLCNGDMRKALNILQ 244
L G L++ L L +LC+GD RKALN+L+
Sbjct: 178 LADTERGLGQRALNMPTDVLNKLAQLCDGDARKALNLLE 216
>UNIPROTKB|P35251 [details] [associations]
symbol:RFC1 "Replication factor C subunit 1" species:9606
"Homo sapiens" [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0006261
"DNA-dependent DNA replication" evidence=TAS] [GO:0007004 "telomere
maintenance via telomerase" evidence=TAS] [GO:0008047 "enzyme
activator activity" evidence=TAS] [GO:0000084 "S phase of mitotic
cell cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle"
evidence=TAS] [GO:0000722 "telomere maintenance via recombination"
evidence=TAS] [GO:0000723 "telomere maintenance" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand
elongation involved in DNA replication" evidence=TAS] [GO:0006281
"DNA repair" evidence=TAS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0043085 "positive regulation of
catalytic activity" evidence=TAS] Reactome:REACT_216
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
InterPro:IPR012178 InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005524 Reactome:REACT_115566 GO:GO:0005654 GO:GO:0006355
GO:GO:0006351 GO:GO:0008047 GO:GO:0000084 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 EMBL:CH471069 GO:GO:0007004
GO:GO:0000722 Pathway_Interaction_DB:faspathway Reactome:REACT_383
GO:GO:0006283 GO:GO:0003689 GO:GO:0006271 GO:GO:0032201
GO:GO:0006297 SUPFAM:SSF48019 GO:GO:0005663 KO:K10754
eggNOG:COG5275 EMBL:L23320 EMBL:Z22642 EMBL:AF040250 EMBL:AY600371
EMBL:AK291612 EMBL:BC035297 EMBL:BC051751 EMBL:BC051786
IPI:IPI00375358 IPI:IPI00375359 PIR:A49651 PIR:JN0599
RefSeq:NP_001191676.1 RefSeq:NP_002904.3 UniGene:Hs.507475 PDB:2EBU
PDB:2K6G PDB:2K7F PDBsum:2EBU PDBsum:2K6G PDBsum:2K7F
ProteinModelPortal:P35251 SMR:P35251 IntAct:P35251 STRING:P35251
PhosphoSite:P35251 DMDM:56757608 PaxDb:P35251 PRIDE:P35251
DNASU:5981 Ensembl:ENST00000349703 Ensembl:ENST00000381897
GeneID:5981 KEGG:hsa:5981 UCSC:uc003gtx.2 UCSC:uc003gty.2 CTD:5981
GeneCards:GC04M039291 HGNC:HGNC:9969 HPA:CAB009520 MIM:102579
neXtProt:NX_P35251 PharmGKB:PA34338 HOGENOM:HOG000013116
HOVERGEN:HBG004167 InParanoid:P35251 OMA:GQINFPG OrthoDB:EOG4D26P3
ChiTaRS:RFC1 EvolutionaryTrace:P35251 GenomeRNAi:5981 NextBio:23281
PMAP-CutDB:P35251 ArrayExpress:P35251 Bgee:P35251 CleanEx:HS_RFC1
Genevestigator:P35251 GermOnline:ENSG00000035928 Uniprot:P35251
Length = 1148
Score = 138 (53.6 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 55/217 (25%), Positives = 99/217 (45%)
Query: 78 LLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID----VVRQQIQDFASTQS 133
LL GPPG GKT+T V ++L G Y +ELNASD R +V + + + +
Sbjct: 648 LLSGPPGVGKTTTASLVCQEL-GYSY----VELNASDTRSKSSLKAIVAESLNNTSIKGF 702
Query: 134 FSFGVKASVKL---VLLDEADAMT-KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQ 189
+S G +SV +++DE D M + + ++ +I K+T+ +IC ++ P ++
Sbjct: 703 YSNGAASSVSTKHALIMDEVDGMAGNEDRGGIQELIG-LIKHTKIPIICMCNDRNHPKIR 761
Query: 190 SR---CTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQST 246
S C RF + + + EGL + + ++ N D+R+ L+ L
Sbjct: 762 SLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMW 821
Query: 247 HMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFA 283
S+ +T + + KDI+ + + + FA
Sbjct: 822 CARSKALTYDQAK-ADSHRAKKDIKMGPFDVARKVFA 857
Score = 57 (25.1 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 10 MDFDEDENQNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADV 55
+DF E + +N+ + ++ WV+KY+P SL +
Sbjct: 553 LDFKEQVAEETSGDSKARNLADDSSENKVENLLWVDKYKPTSLKTI 598
>UNIPROTKB|Q8WVB6 [details] [associations]
symbol:CHTF18 "Chromosome transmission fidelity protein 18
homolog" species:9606 "Homo sapiens" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006260
EMBL:CH471112 GO:GO:0007049 GO:GO:0017111 HSSP:P38630
eggNOG:COG0470 EMBL:AK024476 EMBL:AL031033 EMBL:BC006278
EMBL:BC006437 EMBL:BC018184 IPI:IPI00414657 IPI:IPI00872454
IPI:IPI00895945 RefSeq:NP_071375.1 UniGene:Hs.153850
ProteinModelPortal:Q8WVB6 SMR:Q8WVB6 IntAct:Q8WVB6 STRING:Q8WVB6
DMDM:74751544 PaxDb:Q8WVB6 PRIDE:Q8WVB6 Ensembl:ENST00000262315
Ensembl:ENST00000455171 GeneID:63922 KEGG:hsa:63922 UCSC:uc002cke.4
UCSC:uc002ckf.4 CTD:63922 GeneCards:GC16P000838 HGNC:HGNC:18435
MIM:613201 neXtProt:NX_Q8WVB6 PharmGKB:PA134908713
HOVERGEN:HBG062099 KO:K11269 GenomeRNAi:63922 NextBio:65649
ArrayExpress:Q8WVB6 Bgee:Q8WVB6 CleanEx:HS_CHTF18
Genevestigator:Q8WVB6 Uniprot:Q8WVB6
Length = 975
Score = 109 (43.4 bits), Expect = 3.8e-07, Sum P(3) = 3.8e-07
Identities = 31/75 (41%), Positives = 43/75 (57%)
Query: 78 LLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFS-F 136
LL GPPG GKT+ +AR A Y ++E+NASDDR +V R +I+ A+TQ S
Sbjct: 371 LLCGPPGLGKTTLAHVIARH---AGYS--VVEMNASDDRSPEVFRTRIE--AATQMESVL 423
Query: 137 GVKASVKLVLLDEAD 151
G +++DE D
Sbjct: 424 GAGGKPNCLVIDEID 438
Score = 86 (35.3 bits), Expect = 3.8e-07, Sum P(3) = 3.8e-07
Identities = 23/77 (29%), Positives = 36/77 (46%)
Query: 177 ICN-QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGD 235
ICN Q + L+ + F P P + +RL+ V +G+ G LAAL + D
Sbjct: 489 ICNDQFAPSLRQLKQQAFLLHFPPTLPSRLVQRLQEVSLRQGMRADPGVLAALCEKTDND 548
Query: 236 MRKALNILQSTHMASQQ 252
+R +N LQ + Q+
Sbjct: 549 IRACINTLQFLYSRGQR 565
Score = 40 (19.1 bits), Expect = 3.8e-07, Sum P(3) = 3.8e-07
Identities = 13/55 (23%), Positives = 22/55 (40%)
Query: 5 ETVSLMDFDEDENQNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHR 59
+ V ++F +E + P D+ I P+ A W ++ ADV R
Sbjct: 105 QVVKRLNFRSEEMEEPPPPDSSPTDITPPPSPEDLAELWGHGVS-EAAADVGLTR 158
>UNIPROTKB|F1S4I7 [details] [associations]
symbol:RFC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524 GO:GO:0005634
GO:GO:0006260 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 OMA:GQINFPG EMBL:FP089679 Ensembl:ENSSSCT00000009614
Uniprot:F1S4I7
Length = 1146
Score = 137 (53.3 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 51/188 (27%), Positives = 89/188 (47%)
Query: 78 LLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQS---- 133
LL GPPG GKT+T V ++L G Y +ELNASD R + +++ I + + S
Sbjct: 647 LLSGPPGVGKTTTASLVCQEL-GYSY----VELNASDTRSKNSLKEIIAESLNNTSIKGF 701
Query: 134 FSFGVKASVKL---VLLDEADAMT-KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQ 189
+S G SV +++DE D M + + ++ +I K+T+ +IC ++ P ++
Sbjct: 702 YSSGAAHSVSTKHALIMDEVDGMAGNEDRGGIQELIG-LIKHTKIPIICMCNDRNHPKIR 760
Query: 190 SR---CTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQST 246
S C RF + + + EGL + + ++ N D+R+ L+ L
Sbjct: 761 SLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMW 820
Query: 247 HMASQQIT 254
S+ +T
Sbjct: 821 CARSKALT 828
Score = 56 (24.8 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 10 MDFDEDENQNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADV 55
+DF E + +N+ + ++ WV+KY+P SL +
Sbjct: 552 LDFKEQVAEETDGDSRARNLADDSSENKVENLLWVDKYKPASLKTI 597
>UNIPROTKB|Q9KT51 [details] [associations]
symbol:VC_1054 "DNA polymerase III, subunits gamma and tau"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR021029
InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397 OMA:VQLYYQT
ProtClustDB:PRK07994 InterPro:IPR022001 Pfam:PF12168 HSSP:P06710
PIR:H82246 RefSeq:NP_230699.1 ProteinModelPortal:Q9KT51 SMR:Q9KT51
DNASU:2614324 GeneID:2614324 KEGG:vch:VC1054 PATRIC:20081206
Uniprot:Q9KT51
Length = 692
Score = 144 (55.7 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 49/212 (23%), Positives = 94/212 (44%)
Query: 46 KYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLY-GPPGTGKTSTILAVARKLY---G- 100
K+RP ++V ++ ++ ++NRL H L+ G G GKT+ A+ L G
Sbjct: 9 KWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETGI 68
Query: 101 -AQYHNMILELNASDD-RGIDVV------RQQIQDFAST-QSFSFG-VKASVKLVLLDEA 150
A D R +D++ R +++D + + + K+ L+DE
Sbjct: 69 TATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLIDEV 128
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
+++ + AL + +E+ + +F L K+ + SRC +F P+ ++ ++L
Sbjct: 129 HMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPISVENIQQQLD 188
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNI 242
V+ AE + L L +G MR AL++
Sbjct: 189 KVLHAEQISSDSKALNLLAHAADGSMRDALSL 220
>TIGR_CMR|VC_1054 [details] [associations]
symbol:VC_1054 "DNA polymerase III, subunits gamma and tau"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR021029 InterPro:IPR022754
Pfam:PF12169 Pfam:PF12170 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0017111
GO:GO:0003887 GO:GO:0009360 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 OMA:VQLYYQT ProtClustDB:PRK07994
InterPro:IPR022001 Pfam:PF12168 HSSP:P06710 PIR:H82246
RefSeq:NP_230699.1 ProteinModelPortal:Q9KT51 SMR:Q9KT51
DNASU:2614324 GeneID:2614324 KEGG:vch:VC1054 PATRIC:20081206
Uniprot:Q9KT51
Length = 692
Score = 144 (55.7 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 49/212 (23%), Positives = 94/212 (44%)
Query: 46 KYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLY-GPPGTGKTSTILAVARKLY---G- 100
K+RP ++V ++ ++ ++NRL H L+ G G GKT+ A+ L G
Sbjct: 9 KWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETGI 68
Query: 101 -AQYHNMILELNASDD-RGIDVV------RQQIQDFAST-QSFSFG-VKASVKLVLLDEA 150
A D R +D++ R +++D + + + K+ L+DE
Sbjct: 69 TATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLIDEV 128
Query: 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLK 210
+++ + AL + +E+ + +F L K+ + SRC +F P+ ++ ++L
Sbjct: 129 HMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPISVENIQQQLD 188
Query: 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNI 242
V+ AE + L L +G MR AL++
Sbjct: 189 KVLHAEQISSDSKALNLLAHAADGSMRDALSL 220
>FB|FBgn0004913 [details] [associations]
symbol:Gnf1 "Germ line transcription factor 1" species:7227
"Drosophila melanogaster" [GO:0003677 "DNA binding"
evidence=NAS;IDA] [GO:0005634 "nucleus" evidence=NAS;IDA]
[GO:0006260 "DNA replication" evidence=IEA;NAS] [GO:0005663 "DNA
replication factor C complex" evidence=IEA;NAS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0046331
"lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 Pfam:PF00533 EMBL:AE014297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005875 GO:GO:0022008
GO:GO:0006355 GO:GO:0003677 GO:GO:0006260 GO:GO:0006351
GO:GO:0046331 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 KO:K10754 EMBL:L17340 EMBL:U97685 EMBL:AY122077
EMBL:BT003618 RefSeq:NP_001014605.1 RefSeq:NP_524229.1
UniGene:Dm.2491 ProteinModelPortal:P35600 SMR:P35600 DIP:DIP-18735N
IntAct:P35600 MINT:MINT-961959 STRING:P35600 PaxDb:P35600
EnsemblMetazoa:FBtr0078837 GeneID:40607 KEGG:dme:Dmel_CG1119
CTD:100035172 FlyBase:FBgn0004913 eggNOG:COG5275 InParanoid:P35600
OrthoDB:EOG4S1RP9 GenomeRNAi:40607 NextBio:819627 GermOnline:CG1119
Uniprot:P35600
Length = 986
Score = 138 (53.6 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 58/223 (26%), Positives = 100/223 (44%)
Query: 78 LLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFS-- 135
LL GPPG GKT+T V ++L G +E NASD R +++ ++ S +S S
Sbjct: 484 LLSGPPGIGKTTTATLVVKEL-GFD----AVEFNASDTRSKRLLKDEVSTLLSNKSLSGY 538
Query: 136 F---GVKASVKLVLL-DEADAMTKDAQFALRRVIEKYTKNTRFALIC--NQVNKI-IPAL 188
F G S K VL+ DE D M + + + K++ +IC N N I +L
Sbjct: 539 FTGQGQAVSRKHVLIMDEVDGMAGNEDRGGMQELIALIKDSSIPIICMCNDRNHPKIRSL 598
Query: 189 QSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM 248
+ C RF + ++ + E + ++ + ++ N D+R+++N H+
Sbjct: 599 VNYCYDLRFQRPRLEQIKGKIMSICFKEKVKISPAKVEEIIAATNNDIRQSIN-----HI 653
Query: 249 ASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF-ADSFKRIS 290
A E+A KD++ + ++ + F AD K +S
Sbjct: 654 ALLSAKEDASQKSGQQVATKDLKLGPWEVVRKVFTADEHKHMS 696
Score = 52 (23.4 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 37 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRL 68
D+ WV+K++P S+ ++ + +L
Sbjct: 417 DVVGMAWVDKHKPTSIKEIVGQAGAASNVTKL 448
>TIGR_CMR|CPS_2757 [details] [associations]
symbol:CPS_2757 "ATPase, AAA family" species:167879
"Colwellia psychrerythraea 34H" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0019538 "protein metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008824 Pfam:PF05496 SMART:SM00382
GO:GO:0000166 GO:GO:0006281 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0006310 GO:GO:0009378 eggNOG:COG2256 HOGENOM:HOG000017623
KO:K07478 OMA:HDEPDAF ProtClustDB:PRK13342 InterPro:IPR021886
Pfam:PF12002 RefSeq:YP_269469.1 ProteinModelPortal:Q480Q0
SMR:Q480Q0 STRING:Q480Q0 GeneID:3522496 KEGG:cps:CPS_2757
PATRIC:21468551 BioCyc:CPSY167879:GI48-2818-MONOMER Uniprot:Q480Q0
Length = 511
Score = 142 (55.0 bits), Expect = 7.3e-07, P = 7.3e-07
Identities = 68/264 (25%), Positives = 108/264 (40%)
Query: 2 AEAETVSLMDFDEDENQNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDI 61
+E + SL D D N + DN G P K RP++LAD + I
Sbjct: 22 SEGQQDSLFDLTPD-NDEVTSTDNTST---QGNAAASSFMPLAAKMRPKTLADYVGQQHI 77
Query: 62 VDTIDRLTSENRLPH---LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 118
+ L H L+ +GPPG+GKT T+ + AQ+ N +E ++ GI
Sbjct: 78 LGGDSPLAQSIEQGHCHSLIFWGPPGSGKT-TLAEII-----AQHANAEIERVSAVTSGI 131
Query: 119 DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC 178
+R I+ A ++ G ++ +DE K Q A IE T A
Sbjct: 132 KEIRSAIEK-AKLRAQGEGANKRRTVLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTE 190
Query: 179 NQVNKIIPALQSRCTRFRFAPL---EPVHVTERLKHVIEAE---GLDVTEGGLAALVRLC 232
N ++ AL SR + L + V +R + EAE + ++ +L+
Sbjct: 191 NPAFELNQALLSRARLYTLKKLTRDDLAQVLQRAISLCEAEQQLSIKLSVDAKQSLLNRS 250
Query: 233 NGDMRKALNILQSTHMASQQITEE 256
+GD R+ LN+L++ + S T E
Sbjct: 251 DGDARRLLNLLENC-LDSSVTTHE 273
>TIGR_CMR|GSU_2067 [details] [associations]
symbol:GSU_2067 "ATPase, AAA family" species:243231
"Geobacter sulfurreducens PCA" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0019538 "protein metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111
HOGENOM:HOG000017623 KO:K07478 ProtClustDB:PRK13342
InterPro:IPR021886 Pfam:PF12002 OMA:FEVIAPL RefSeq:NP_953116.1
ProteinModelPortal:Q74BH4 GeneID:2686000 KEGG:gsu:GSU2067
PATRIC:22026995 BioCyc:GSUL243231:GH27-1993-MONOMER Uniprot:Q74BH4
Length = 440
Score = 141 (54.7 bits), Expect = 7.3e-07, P = 7.3e-07
Identities = 51/218 (23%), Positives = 93/218 (42%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDT---IDRLTSENRLPHLLLYGPPGTGKTSTILAV 94
++ +P E+ RP++L + ++ + RL + L L+ +GPPG+GKT+ +
Sbjct: 13 LRNAPLAERMRPRTLDEYVGQEHLLGEGKLLRRLIESDTLTSLIFWGPPGSGKTTLARVI 72
Query: 95 ARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT 154
A + H + S GI +R+ +++ + + + ++ +DE
Sbjct: 73 AN---ATKSHFIFFSAILS---GIKEIREIVKEAEEEKKY----RGRNTILFVDEIHRFN 122
Query: 155 KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE 214
K Q A +E+ T A N +++ L SRC PL +V + L+ +
Sbjct: 123 KSQQDAFLPYVERGTFTIIGATTENPSFEVVAPLLSRCKVLVLNPLSQENVEQILRSALA 182
Query: 215 -------AEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
A GL + LA + GD R ALN L++
Sbjct: 183 DPERGLGASGLAADDDALAFMAEQSGGDGRVALNTLET 220
>UNIPROTKB|F1PFW9 [details] [associations]
symbol:CHTF18 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 GeneTree:ENSGT00550000075029
OMA:TMLAYNL EMBL:AAEX03004670 Ensembl:ENSCAFT00000031175
Uniprot:F1PFW9
Length = 1140
Score = 108 (43.1 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 37/116 (31%), Positives = 57/116 (49%)
Query: 57 AHRDIV-DTIDRLTSENRLPH---LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112
+H ++ D ++ +R P LL GPPG GKT+ +AR A Y ++E+NA
Sbjct: 503 SHEQVLEDMLEADLDPSRRPRQKVALLCGPPGLGKTTLAHVIARH---AGYS--VVEMNA 557
Query: 113 SDDRGIDVVRQQIQDFASTQSFS-FGVKASVKLVLLDEADAMTKDAQFALRRVIEK 167
SDDR + R I+ A+TQ S G +++DE D A L V+++
Sbjct: 558 SDDRSPEAFRTCIE--AATQMESVLGAGGKPNCLVIDEIDGAPVAAINVLLNVLDR 611
Score = 86 (35.3 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 28/86 (32%), Positives = 44/86 (51%)
Query: 177 ICNQVNKIIPAL-QSRCTRF--RFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCN 233
ICN ++ +P+L Q R F F P+ +T+RL+ EG+ G LAAL +
Sbjct: 646 ICN--DQFVPSLRQLRQQAFLLHFPPILSSRLTQRLQ-----EGMQADPGALAALCEKTD 698
Query: 234 GDMRKALNILQSTH-MASQQITEEAV 258
D+R +N LQ H ++++ AV
Sbjct: 699 NDIRACINTLQFLHGRGRRELSVRAV 724
>ASPGD|ASPL0000006457 [details] [associations]
symbol:AN6694 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0051455
"attachment of spindle microtubules to kinetochore involved in
homologous chromosome segregation" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 GO:GO:0007049
EMBL:BN001301 GO:GO:0017111 eggNOG:COG0470 EMBL:AACD01000112
ProteinModelPortal:P0C1D3 EnsemblFungi:CADANIAT00007479
HOGENOM:HOG000180892 OMA:YNEGFSN OrthoDB:EOG4S1XG8 Uniprot:P0C1D3
Length = 993
Score = 115 (45.5 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 30/66 (45%), Positives = 40/66 (60%)
Query: 71 ENRLPH---LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQD 127
E PH LLL GPPG GKT+ AR+ A Y +LE+NASD+R DVV+ +I+D
Sbjct: 308 EEERPHRKVLLLCGPPGLGKTTLAHVCARQ---AGYE--VLEINASDERSRDVVKGRIRD 362
Query: 128 FASTQS 133
T++
Sbjct: 363 ALGTEN 368
Score = 77 (32.2 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 35/123 (28%), Positives = 53/123 (43%)
Query: 138 VKASVKLVLLDEAD-AMTKD-AQFALRRVIEKYTKNTRFALICNQVN--KIIPALQSRCT 193
+KA LVLLD+ + A T + A +R + + L+CN V + P QS
Sbjct: 411 MKALTDLVLLDQRNSARTSERASDGRKRKGDNFRFLRPLILVCNDVYHASLRPLRQSSVA 470
Query: 194 RF---RFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS 250
R APLE +V R+K + EG+ G+ L G ++ ++ST A
Sbjct: 471 EIIHVRQAPLE--NVVSRMKSIFTLEGIPSDSDGVRRLCEASWGLAKRKQRGVRSTGAAE 528
Query: 251 QQI 253
I
Sbjct: 529 GDI 531
>TIGR_CMR|BA_4628 [details] [associations]
symbol:BA_4628 "ATPase, AAA family" species:198094
"Bacillus anthracis str. Ames" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0019538 "protein metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0017111 KO:K07478
ProtClustDB:PRK13342 InterPro:IPR021886 Pfam:PF12002
HOGENOM:HOG000017624 OMA:RLLVIAY RefSeq:NP_846846.1
RefSeq:YP_021276.1 RefSeq:YP_030542.1 ProteinModelPortal:Q81LJ0
SMR:Q81LJ0 DNASU:1085339 EnsemblBacteria:EBBACT00000011786
EnsemblBacteria:EBBACT00000016240 EnsemblBacteria:EBBACT00000022391
GeneID:1085339 GeneID:2814872 GeneID:2851063 KEGG:ban:BA_4628
KEGG:bar:GBAA_4628 KEGG:bat:BAS4294
BioCyc:BANT260799:GJAJ-4350-MONOMER
BioCyc:BANT261594:GJ7F-4499-MONOMER Uniprot:Q81LJ0
Length = 428
Score = 137 (53.3 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 62/227 (27%), Positives = 93/227 (40%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDT---IDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
P + RP ++ +V + +V + R+ N ++LYGPPGTGKTS A+A
Sbjct: 4 PLAHRMRPTNIQEVIGQQHLVGEGKILWRMVQANHFQSMILYGPPGTGKTSIASAIAGST 63
Query: 99 YGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVL-LDEADAMTKDA 157
G + +L + + ++VV Q+ K LVL LDE + K
Sbjct: 64 -GTPFR--LLNAVTHNKKDMEVVVQE-------------AKMHRHLVLILDEVHRLDKAK 107
Query: 158 QFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE--A 215
Q L +E A N + I A++SRC F L + LK +E
Sbjct: 108 QDFLLPHLESGLLTLIGATTSNPFHAINSAIRSRCQIFELHALTEEDLLIGLKRALEDKE 167
Query: 216 EGLD-----VTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEA 257
+GL VT L GDMR A N L+ ++S ++A
Sbjct: 168 KGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKA 214
>TIGR_CMR|SO_2013 [details] [associations]
symbol:SO_2013 "DNA polymerase III, gamma and tau subunits"
species:211586 "Shewanella oneidensis MR-1" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR021029
InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170 PRINTS:PR00300
SMART:SM00382 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0017111 GO:GO:0003887
GO:GO:0009360 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
HOGENOM:HOG000083934 HSSP:P06710 RefSeq:NP_717619.1
ProteinModelPortal:Q8EFG0 SMR:Q8EFG0 GeneID:1169765
KEGG:son:SO_2013 PATRIC:23523647 OMA:PKSGLEM ProtClustDB:PRK14949
Uniprot:Q8EFG0
Length = 1002
Score = 140 (54.3 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 48/214 (22%), Positives = 92/214 (42%)
Query: 46 KYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLY-GPPGTGKTSTILAVARKLY---GA 101
K+RP + + ++ + ++ RL H L+ G G GKTS A+ L G
Sbjct: 9 KWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCETGV 68
Query: 102 QYH-----NMILELNASDDRGIDVV------RQQIQDFAST-QSFSFG-VKASVKLVLLD 148
+E+ + R +D++ R ++ D + + + K+ L+D
Sbjct: 69 TASPCGVCGSCVEI--AQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRFKVYLID 126
Query: 149 EADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTER 208
E +++ + AL + +E+ ++ +F L K+ + SRC +F L + +
Sbjct: 127 EVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQQEIGTQ 186
Query: 209 LKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNI 242
L+H++ E L L L + NG MR AL++
Sbjct: 187 LQHILTQEQLPFEHEALGLLAKSANGSMRDALSL 220
>SGD|S000005743 [details] [associations]
symbol:RFC1 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000278 "mitotic cell cycle"
evidence=IMP] [GO:0007049 "cell cycle" evidence=IEA] [GO:0051301
"cell division" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA;IDA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=TAS] [GO:0006281 "DNA
repair" evidence=IMP] [GO:0006272 "leading strand elongation"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 SGD:S000005743 Pfam:PF00533 GO:GO:0005524
GO:GO:0005634 EMBL:BK006948 GO:GO:0051301 GO:GO:0006298 EMBL:X92441
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0000278 GO:GO:0003689
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 PDB:1SXJ PDBsum:1SXJ
KO:K10754 eggNOG:COG5275 HOGENOM:HOG000164552 OMA:KLRMDER
OrthoDB:EOG4WDHM8 EMBL:U03102 EMBL:U26027 EMBL:Z75125 PIR:S44763
RefSeq:NP_014860.1 ProteinModelPortal:P38630 SMR:P38630
DIP:DIP-2527N IntAct:P38630 MINT:MINT-619267 STRING:P38630
PaxDb:P38630 PeptideAtlas:P38630 EnsemblFungi:YOR217W GeneID:854392
KEGG:sce:YOR217W CYGD:YOR217w EvolutionaryTrace:P38630
NextBio:976553 Genevestigator:P38630 GermOnline:YOR217W
Uniprot:P38630
Length = 861
Score = 139 (54.0 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 52/193 (26%), Positives = 92/193 (47%)
Query: 78 LLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQS---- 133
+LYGPPG GKT+ VA++L G Y ILE NASD R ++ +++ S
Sbjct: 350 MLYGPPGIGKTTAAHLVAQEL-G--YD--ILEQNASDVRSKTLLNAGVKNALDNMSVVGY 404
Query: 134 FSFGVKA---SVK--LVLLDEADAMTKDAQFALRRVIEKYTK-NTRFALICNQVN--KII 185
F +A + K ++++DE D M+ + + ++ + K +T LICN+ N K+
Sbjct: 405 FKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMR 464
Query: 186 PALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
P C +F + + RL + E + + L++ GD+R+ +N+L +
Sbjct: 465 P-FDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLST 523
Query: 246 THMASQQITEEAV 258
++ I E +
Sbjct: 524 ISTTTKTINHENI 536
>UNIPROTKB|Q71ZF6 [details] [associations]
symbol:LMOf2365_1533 "ATPase, AAA family domain protein"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR003593
InterPro:IPR008824 Pfam:PF05496 SMART:SM00382 GO:GO:0000166
GO:GO:0006281 GO:GO:0006310 EMBL:AE017262 GenomeReviews:AE017262_GR
GO:GO:0009378 eggNOG:COG2256 KO:K07478 ProtClustDB:PRK13342
InterPro:IPR021886 Pfam:PF12002 HOGENOM:HOG000017624 OMA:RLLVIAY
RefSeq:YP_014131.1 ProteinModelPortal:Q71ZF6 SMR:Q71ZF6
STRING:Q71ZF6 DNASU:2797899 GeneID:2797899 KEGG:lmf:LMOf2365_1533
PATRIC:20324305 Uniprot:Q71ZF6
Length = 427
Score = 135 (52.6 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 57/229 (24%), Positives = 99/229 (43%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDT---IDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
P + RP++L ++ +V I R+ +L ++LYGPPG GKTS A+A
Sbjct: 5 PLAYRMRPKALDEIVGQTHLVGKDKIIYRMVKAKQLSSMILYGPPGIGKTSIASAIAGS- 63
Query: 99 YGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQ 158
+Y L ++ + ++VV + + + +V ++LLDE + K Q
Sbjct: 64 --TKYAFRTLNAVTNNKKDMEVVAAEAK-----------MSGTV-ILLLDEVHRLDKAKQ 109
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPL--EPVHVTERLKHVIEAE 216
L ++E A N I PA++SR F PL E + +T +
Sbjct: 110 DFLLPLLESGAIILIGATTSNPYIAINPAIRSRTQIFELKPLTVEDIMITMDRALSDKER 169
Query: 217 GL-----DVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYL 260
GL ++ E NGD+R ALN L+ ++S+ + +++
Sbjct: 170 GLGNYDVEIDEVAKKHFATASNGDVRSALNALELAVISSEPNEDGVIHI 218
>RGD|1310473 [details] [associations]
symbol:Chtf18 "CTF18, chromosome transmission fidelity factor 18
homolog (S. cerevisiae)" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0009360 "DNA polymerase III complex"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR010372 Pfam:PF00004 Pfam:PF06144 SMART:SM00382
RGD:1310473 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 EMBL:CH473948 GO:GO:0003887 CTD:63922
KO:K11269 GeneTree:ENSGT00550000075029 OrthoDB:EOG44QT0B
GO:GO:0009360 OMA:TMLAYNL IPI:IPI00369267 RefSeq:NP_001099243.1
UniGene:Rn.53402 Ensembl:ENSRNOT00000026139 GeneID:287146
KEGG:rno:287146 UCSC:RGD:1310473 NextBio:625609 Uniprot:D4AC99
Length = 968
Score = 108 (43.1 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 44/148 (29%), Positives = 66/148 (44%)
Query: 29 VIVSGTPPDIKASPWVEKYRPQSLADVA----AHRDIVDT-IDRLTSENRLPH---LLLY 80
V+ P K P VE R A +H +++ ++ +R P LL
Sbjct: 307 VVFGHERPARKPRPGVEPTRVGKEAPAPGKWKSHEQVLEEMLEAELDPSRRPRQKVALLC 366
Query: 81 GPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFS-FGVK 139
GPPG GKT+ VAR A Y ++E+NASDDR + R +I+ A+TQ S G
Sbjct: 367 GPPGLGKTTLAHVVARH---AGY--CVVEMNASDDRSPEAFRTRIE--AATQMESVLGAG 419
Query: 140 ASVKLVLLDEADAMTKDAQFALRRVIEK 167
+++DE D A L ++ +
Sbjct: 420 GRPNCLVIDEIDGAPTAAINVLLSILNR 447
Score = 78 (32.5 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 21/77 (27%), Positives = 34/77 (44%)
Query: 177 ICN-QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGD 235
ICN Q + L+ + P P + +RL+ + G+ G LAAL + D
Sbjct: 482 ICNDQFTPSLRQLKQQALLLHVPPTLPSRLVQRLQEISLQHGMRSDPGALAALCEKTDND 541
Query: 236 MRKALNILQSTHMASQQ 252
+R +N LQ + Q+
Sbjct: 542 IRACINTLQFLYGRGQR 558
>UNIPROTKB|P0AAZ4 [details] [associations]
symbol:rarA species:83333 "Escherichia coli K-12"
[GO:0030894 "replisome" evidence=IDA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IGI] [GO:0006310 "DNA recombination" evidence=IGI]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006261 GO:GO:0006310 GO:GO:0017111
GO:GO:0030894 EMBL:D49398 eggNOG:COG2256 HOGENOM:HOG000017623
KO:K07478 ProtClustDB:PRK13342 InterPro:IPR021886 Pfam:PF12002
EMBL:X05017 PIR:C64828 RefSeq:NP_415412.1 RefSeq:YP_489164.1
ProteinModelPortal:P0AAZ4 SMR:P0AAZ4 DIP:DIP-48151N IntAct:P0AAZ4
MINT:MINT-1224512 PRIDE:P0AAZ4 EnsemblBacteria:EBESCT00000001727
EnsemblBacteria:EBESCT00000016690 GeneID:12930363 GeneID:945505
KEGG:ecj:Y75_p0864 KEGG:eco:b0892 PATRIC:32116995 EchoBASE:EB2553
EcoGene:EG12690 OMA:TTYYLND BioCyc:EcoCyc:EG12690-MONOMER
BioCyc:ECOL316407:JW0875-MONOMER Genevestigator:P0AAZ4
Uniprot:P0AAZ4
Length = 447
Score = 135 (52.6 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 55/213 (25%), Positives = 93/213 (43%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDT---IDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
P + RP++LA + ++ + R L ++L+GPPGTGKT+ +AR
Sbjct: 15 PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIAR-- 72
Query: 99 YGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQ 158
Y N +E ++ G+ +R+ I+ + Q+ + G + ++ +DE K Q
Sbjct: 73 ----YANADVERISAVTSGVKEIREAIE--RARQNRNAGRRT---ILFVDEVHRFNKSQQ 123
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE-- 216
A IE T A N ++ AL SR + L + + L +E +
Sbjct: 124 DAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTR 183
Query: 217 ---GLDVT--EGGLAALVRLCNGDMRKALNILQ 244
G D+ + A+ L NGD R+ALN L+
Sbjct: 184 GYGGQDIVLPDETRRAIAELVNGDARRALNTLE 216
>ZFIN|ZDB-GENE-070410-99 [details] [associations]
symbol:rfc1 "replication factor C (activator 1) 1"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005663 "DNA
replication factor C complex" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
InterPro:IPR012178 InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 InterPro:IPR001357 Pfam:PF00533
ZFIN:ZDB-GENE-070410-99 GO:GO:0005524 GO:GO:0006260 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GeneTree:ENSGT00670000098003
GO:GO:0003689 SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 CTD:5981
EMBL:CR759875 EMBL:BX000461 IPI:IPI00851894 RefSeq:NP_001082960.2
UniGene:Dr.79216 Ensembl:ENSDART00000143948 GeneID:100037336
KEGG:dre:100037336 NextBio:20788508 ArrayExpress:F1Q5P6 Bgee:F1Q5P6
Uniprot:F1Q5P6
Length = 1147
Score = 131 (51.2 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 54/216 (25%), Positives = 98/216 (45%)
Query: 78 LLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDF---ASTQSF 134
LL GPPG GKT+T V +L G Y +E+NAS R + +++ I + S ++F
Sbjct: 641 LLSGPPGVGKTTTAALVCEEL-GYSY----VEMNASCTRSKNSLKEVIAESLNNTSIKNF 695
Query: 135 SFGVKASVK---LVLLDEADAMT-KDAQFALRRVIEKYTKNTRFALIC--NQVN-KIIPA 187
G +V ++++DE D M + + ++ +I K ++ +IC N N + I +
Sbjct: 696 YTGASQTVSSKHVLIMDEVDGMAGNEDRGGIQEMIG-LIKQSKIPIICMCNDRNHQKIRS 754
Query: 188 LQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH 247
L + C RF + + + EGL + L ++ N D+R+ L+ L
Sbjct: 755 LANYCYDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPALNEVILASNQDIRQVLHNLSMWS 814
Query: 248 MASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFA 283
+ +T + N KD++ + + + FA
Sbjct: 815 AKDKVMTYDQAK-ADANNAKKDMKLGPFDVCRKVFA 849
Score = 54 (24.1 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 31 VSGTPPDIKASP--WVEKYRPQSLADV 55
VS + P+ S WV+KYRP+SL ++
Sbjct: 564 VSHSAPENDGSSLLWVDKYRPRSLKNL 590
>UNIPROTKB|E7EXA6 [details] [associations]
symbol:CHTF18 "Chromosome transmission fidelity protein 18
homolog" species:9606 "Homo sapiens" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
Pfam:PF00004 SMART:SM00382 GO:GO:0005524 GO:GO:0017111
EMBL:AL031033 HGNC:HGNC:18435 IPI:IPI00178203
ProteinModelPortal:E7EXA6 SMR:E7EXA6 PRIDE:E7EXA6
Ensembl:ENST00000317063 OMA:TMLAYNL PhylomeDB:E7EXA6
ArrayExpress:E7EXA6 Bgee:E7EXA6 Uniprot:E7EXA6
Length = 1184
Score = 109 (43.4 bits), Expect = 4.5e-06, Sum P(3) = 4.5e-06
Identities = 31/75 (41%), Positives = 43/75 (57%)
Query: 78 LLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFS-F 136
LL GPPG GKT+ +AR A Y ++E+NASDDR +V R +I+ A+TQ S
Sbjct: 566 LLCGPPGLGKTTLAHVIARH---AGYS--VVEMNASDDRSPEVFRTRIE--AATQMESVL 618
Query: 137 GVKASVKLVLLDEAD 151
G +++DE D
Sbjct: 619 GAGGKPNCLVIDEID 633
Score = 74 (31.1 bits), Expect = 4.5e-06, Sum P(3) = 4.5e-06
Identities = 23/77 (29%), Positives = 35/77 (45%)
Query: 177 ICN-QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGD 235
ICN Q + L+ + F P P + +RL+ EG+ G LAAL + D
Sbjct: 684 ICNDQFAPSLRQLKQQAFLLHFPPTLPSRLVQRLQ-----EGMRADPGVLAALCEKTDND 738
Query: 236 MRKALNILQSTHMASQQ 252
+R +N LQ + Q+
Sbjct: 739 IRACINTLQFLYSRGQR 755
Score = 44 (20.5 bits), Expect = 4.5e-06, Sum P(3) = 4.5e-06
Identities = 13/55 (23%), Positives = 23/55 (41%)
Query: 5 ETVSLMDFDEDENQNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHR 59
+ V ++F +E + P D+ I P+ A W + ++ ADV R
Sbjct: 302 QVVKRLNFRSEEMEEPPPPDSSPTDITPPPSPEDLAELWGHGFS-EAAADVGLTR 355
>UNIPROTKB|Q47XQ9 [details] [associations]
symbol:dnaX "DNA polymerase III, gamma/tau subunit"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR021029 InterPro:IPR022754
Pfam:PF12169 Pfam:PF12170 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0017111
GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812 KO:K02343
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 HOGENOM:HOG000083934
RefSeq:YP_270411.1 ProteinModelPortal:Q47XQ9 SMR:Q47XQ9
STRING:Q47XQ9 GeneID:3522410 KEGG:cps:CPS_3744 PATRIC:21470407
OMA:ICEFLAR BioCyc:CPSY167879:GI48-3766-MONOMER Uniprot:Q47XQ9
Length = 715
Score = 136 (52.9 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 48/217 (22%), Positives = 95/217 (43%)
Query: 46 KYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLY-GPPGTGKTSTILAVARKL---YGA 101
K+RP++ + +V+ + S+ RL H L+ G G GKT+ A+ L G
Sbjct: 9 KWRPKNFQQLMGQEHVVNVLANALSQKRLHHAYLFTGTRGVGKTTIARIFAKSLNCELGI 68
Query: 102 ---------------QYHNM-ILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLV 145
Q + +LE++A+ +D R+ + + S + K+
Sbjct: 69 TDKPCGKCDACIDIDQGRFVDLLEIDAASKTKVDDTREILDNVQYAPS-----RGRFKVY 123
Query: 146 LLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHV 205
L+DE +++ + AL + +E+ ++ +F L K+ + SRC +F L +
Sbjct: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFILATTDPQKLPITVLSRCLQFHLKALTVKQI 183
Query: 206 TERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNI 242
++L ++ E + +G L L + G MR +L++
Sbjct: 184 EDKLAEILSHEQVSHEQGCLTLLAKAARGSMRDSLSL 220
>TIGR_CMR|CPS_3744 [details] [associations]
symbol:CPS_3744 "DNA polymerase III, gamma/tau subunit"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR021029 InterPro:IPR022754
Pfam:PF12169 Pfam:PF12170 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0017111
GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812 KO:K02343
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 HOGENOM:HOG000083934
RefSeq:YP_270411.1 ProteinModelPortal:Q47XQ9 SMR:Q47XQ9
STRING:Q47XQ9 GeneID:3522410 KEGG:cps:CPS_3744 PATRIC:21470407
OMA:ICEFLAR BioCyc:CPSY167879:GI48-3766-MONOMER Uniprot:Q47XQ9
Length = 715
Score = 136 (52.9 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 48/217 (22%), Positives = 95/217 (43%)
Query: 46 KYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLY-GPPGTGKTSTILAVARKL---YGA 101
K+RP++ + +V+ + S+ RL H L+ G G GKT+ A+ L G
Sbjct: 9 KWRPKNFQQLMGQEHVVNVLANALSQKRLHHAYLFTGTRGVGKTTIARIFAKSLNCELGI 68
Query: 102 ---------------QYHNM-ILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLV 145
Q + +LE++A+ +D R+ + + S + K+
Sbjct: 69 TDKPCGKCDACIDIDQGRFVDLLEIDAASKTKVDDTREILDNVQYAPS-----RGRFKVY 123
Query: 146 LLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHV 205
L+DE +++ + AL + +E+ ++ +F L K+ + SRC +F L +
Sbjct: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFILATTDPQKLPITVLSRCLQFHLKALTVKQI 183
Query: 206 TERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNI 242
++L ++ E + +G L L + G MR +L++
Sbjct: 184 EDKLAEILSHEQVSHEQGCLTLLAKAARGSMRDSLSL 220
>MGI|MGI:2384887 [details] [associations]
symbol:Chtf18 "CTF18, chromosome transmission fidelity
factor 18" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
MGI:MGI:2384887 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006260 GO:GO:0007049 GO:GO:0017111 HSSP:P38630
eggNOG:COG0470 CTD:63922 HOVERGEN:HBG062099 KO:K11269 EMBL:AK077947
EMBL:BC024142 IPI:IPI00153429 RefSeq:NP_663384.2 UniGene:Mm.102540
ProteinModelPortal:Q8BIW9 SMR:Q8BIW9 STRING:Q8BIW9
PhosphoSite:Q8BIW9 PaxDb:Q8BIW9 PRIDE:Q8BIW9
Ensembl:ENSMUST00000048054 GeneID:214901 KEGG:mmu:214901
UCSC:uc008bbk.2 GeneTree:ENSGT00550000075029 HOGENOM:HOG000067805
InParanoid:Q8BIW9 OrthoDB:EOG44QT0B NextBio:374509 Bgee:Q8BIW9
Genevestigator:Q8BIW9 Uniprot:Q8BIW9
Length = 969
Score = 109 (43.4 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 78 LLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFS-F 136
LL GPPG GKT+ VAR A Y ++E+NASDDR + R +I+ A+TQ S
Sbjct: 366 LLCGPPGLGKTTLAHVVARH---AGY--CVVEMNASDDRSPEAFRTRIE--AATQMESVL 418
Query: 137 GVKASVKLVLLDEAD 151
GV +++DE D
Sbjct: 419 GVGGRPNCLVIDEID 433
Score = 74 (31.1 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 21/84 (25%), Positives = 38/84 (45%)
Query: 177 ICN-QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGD 235
ICN Q + L+ + P P + +RL+ + G+ G L AL + D
Sbjct: 483 ICNDQFTPSLRQLKQQALLLHVPPTLPSRLVQRLQEISLQHGMRSDPGALVALCEKTDND 542
Query: 236 MRKALNILQSTH-MASQQITEEAV 258
+R +N LQ + ++++ +AV
Sbjct: 543 IRACINTLQFLYGRGRRELSVKAV 566
>UNIPROTKB|E2QW76 [details] [associations]
symbol:RFC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005663 "DNA
replication factor C complex" evidence=IEA] [GO:0003689 "DNA clamp
loader activity" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524
GO:GO:0006260 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 OMA:GQINFPG EMBL:AAEX03002535
Ensembl:ENSCAFT00000025512 Uniprot:E2QW76
Length = 1152
Score = 127 (49.8 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 52/194 (26%), Positives = 91/194 (46%)
Query: 78 LLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI----DVVRQQIQD------ 127
LL GPPG GKT+T V ++L G Y +ELNASD R +VV + + +
Sbjct: 646 LLSGPPGVGKTTTASLVCQEL-GYSY----VELNASDTRSKNSLKEVVAESLNNTSITGF 700
Query: 128 FASTQSFSFGVKASV---KLVLLDEADAMT-KDAQFALRRVIEKYTKNTRFALICNQVNK 183
++++Q S G SV +++DE D M + + ++ +I K+T+ +IC ++
Sbjct: 701 YSTSQHGSDGAAHSVGSKHALIMDEVDGMAGNEDRGGIQELIG-LIKHTKIPIICMCNDR 759
Query: 184 IIPALQSR---CTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKAL 240
P ++S C RF + + + EGL + + ++ N D+R+ L
Sbjct: 760 NHPKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVL 819
Query: 241 NILQSTHMASQQIT 254
+ L S+ +T
Sbjct: 820 HNLSMWCARSKALT 833
Score = 56 (24.8 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 10 MDFDEDENQNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADV 55
++F+E + +N+ + ++ WV+KY+P SL +
Sbjct: 551 LNFEEQVAEETNDDSRARNLAGDSSENKVENLLWVDKYKPTSLKTI 596
Score = 44 (20.5 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 15 DENQNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVA 56
D +N PK K + G+ +K+SP + P++ + +A
Sbjct: 277 DGRKNCSPKKQAKCESLIGSQQHLKSSPHKIETSPKASSKLA 318
>MGI|MGI:97891 [details] [associations]
symbol:Rfc1 "replication factor C (activator 1) 1"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005663 "DNA replication factor C
complex" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=ISO] [GO:0043234 "protein complex" evidence=ISO]
[GO:0043565 "sequence-specific DNA binding" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 MGI:MGI:97891 Pfam:PF00533 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0006260 GO:GO:0006351
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003689
SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 eggNOG:COG5275 CTD:5981
HOVERGEN:HBG004167 OrthoDB:EOG4D26P3 ChiTaRS:RFC1 EMBL:U01222
EMBL:X72711 EMBL:U36441 EMBL:U07157 EMBL:U15037 IPI:IPI00378168
IPI:IPI00896013 PIR:A49393 RefSeq:NP_035388.2 UniGene:Mm.148877
ProteinModelPortal:P35601 SMR:P35601 STRING:P35601
PhosphoSite:P35601 PaxDb:P35601 PRIDE:P35601 GeneID:19687
KEGG:mmu:19687 UCSC:uc008xni.2 UCSC:uc008xnj.2 InParanoid:P35601
NextBio:297020 CleanEx:MM_RFC1 Genevestigator:P35601
GermOnline:ENSMUSG00000029191 Uniprot:P35601
Length = 1131
Score = 134 (52.2 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 50/188 (26%), Positives = 88/188 (46%)
Query: 78 LLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID----VVRQQIQDFASTQS 133
LL GPPG GKT+T V ++L G Y +ELNASD R + VV + + + +
Sbjct: 632 LLSGPPGVGKTTTASLVCQEL-GYSY----VELNASDTRSKNSLKAVVAESLNNTSIKGF 686
Query: 134 FSFGVKASVKL---VLLDEADAMT-KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQ 189
++ G SV +++DE D M + + ++ +I K+T+ +IC ++ P ++
Sbjct: 687 YTSGAAPSVSARHALIMDEVDGMAGNEDRGGIQELIG-LIKHTKIPIICMCNDRNHPKIR 745
Query: 190 SR---CTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQST 246
S C RF + + + EGL + + ++ N D+R+ L+ L
Sbjct: 746 SLVHYCFDLRFQRPRVEQIKSAMLSIAFKEGLKIPPPAMNEIILGANQDVRQVLHNLSMW 805
Query: 247 HMASQQIT 254
S+ +T
Sbjct: 806 CAQSKALT 813
Score = 48 (22.0 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 43 WVEKYRPQSLADV 55
WV+KY+P SL ++
Sbjct: 570 WVDKYKPASLKNI 582
>RGD|620619 [details] [associations]
symbol:Rfc1 "replication factor C (activator 1) 1" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005663 "DNA replication factor C complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0019904 "protein domain specific
binding" evidence=IPI] [GO:0043234 "protein complex" evidence=IDA]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 Pfam:PF00533 RGD:620619 GO:GO:0005524
GO:GO:0005737 GO:GO:0045893 GO:GO:0043234 GO:GO:0005730
GO:GO:0006260 GO:GO:0043565 GO:GO:0000122 GO:GO:0003690
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003689
HSSP:P26996 SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 CTD:5981
HOVERGEN:HBG004167 EMBL:AF030050 IPI:IPI00210191 RefSeq:NP_445999.1
UniGene:Rn.103272 ProteinModelPortal:Q9Z2R7 STRING:Q9Z2R7
GeneID:89809 KEGG:rno:89809 UCSC:RGD:620619 NextBio:617672
Genevestigator:Q9Z2R7 Uniprot:Q9Z2R7
Length = 1104
Score = 133 (51.9 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 49/188 (26%), Positives = 88/188 (46%)
Query: 78 LLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID----VVRQQIQDFASTQS 133
LL GPPG GKT+T V ++L G Y +ELNASD R + +V + + + +
Sbjct: 631 LLSGPPGVGKTTTASLVCQEL-GYSY----VELNASDTRSKNSLKAIVAESLNNTSIKGF 685
Query: 134 FSFGVKASVKL---VLLDEADAMT-KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQ 189
++ G SV +++DE D M + + ++ +I K+T+ +IC ++ P ++
Sbjct: 686 YTSGASPSVSARHALIMDEVDGMAGNEDRGGIQELIG-LIKHTKIPIICMCNDRNHPKIR 744
Query: 190 SR---CTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQST 246
S C RF + + + EGL + + ++ N D+R+ L+ L
Sbjct: 745 SLVHYCFDLRFQRPRVEQIKSAMLSIAFKEGLKIPPPAMNEIILGANQDVRQVLHNLSMW 804
Query: 247 HMASQQIT 254
S+ +T
Sbjct: 805 CAQSKVLT 812
Score = 48 (22.0 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 43 WVEKYRPQSLADV 55
WV+KY+P SL ++
Sbjct: 570 WVDKYKPTSLKNI 582
>TIGR_CMR|CHY_0329 [details] [associations]
symbol:CHY_0329 "ATP-dependent protease LonB"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004252 "serine-type endopeptidase activity" evidence=ISS]
[GO:0006508 "proteolysis" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0030436 "asexual sporulation"
evidence=ISS] InterPro:IPR002078 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008268 InterPro:IPR008269
InterPro:IPR027065 Pfam:PF00004 Pfam:PF05362 PROSITE:PS01046
PROSITE:PS50045 SMART:SM00382 GO:GO:0005524 GO:GO:0006355
GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006508
GO:GO:0006351 GO:GO:0004252 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 InterPro:IPR025943
PROSITE:PS00676 GO:GO:0004176 eggNOG:COG1067 PANTHER:PTHR10046
RefSeq:YP_359192.1 ProteinModelPortal:Q3AF92 STRING:Q3AF92
GeneID:3728068 KEGG:chy:CHY_0329 PATRIC:21273827
HOGENOM:HOG000054711 KO:K04076 OMA:LYFWNLL ProtClustDB:CLSK873492
BioCyc:CHYD246194:GJCN-330-MONOMER InterPro:IPR014251
TIGRFAMs:TIGR02902 Uniprot:Q3AF92
Length = 547
Score = 94 (38.1 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 26/96 (27%), Positives = 48/96 (50%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTST---ILAVARKL 98
P EK RP++ +++ + ++ + H++LYGPPG GKT+ +L A K
Sbjct: 59 PLAEKTRPENFSEIIGQEEGIEALKAALCGPNPQHVILYGPPGVGKTAAARLVLKEAIKS 118
Query: 99 YGAQYHN--MILELNAS----DDRGI-DVVRQQIQD 127
+ + +E++A+ D+RGI D + + D
Sbjct: 119 PASPFKEGAAFVEVDATCTRFDERGIADPLLGSVHD 154
Score = 82 (33.9 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 186 PALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQ 244
PAL+SRC F PL + E ++ + G+ + + L +V+ N R+A+NI+Q
Sbjct: 254 PALRSRCVEIFFKPLGDEEIREIAQNAAKKIGISLGKHALQTIVKYANSG-REAVNIVQ 311
>TIGR_CMR|DET_1309 [details] [associations]
symbol:DET_1309 "ATPase, AAA family" species:243164
"Dehalococcoides ethenogenes 195" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0019538 "protein metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008824 Pfam:PF05496 SMART:SM00382
GO:GO:0000166 GO:GO:0006281 GO:GO:0006310 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0009378 eggNOG:COG2256
HOGENOM:HOG000017623 KO:K07478 ProtClustDB:PRK13342
InterPro:IPR021886 Pfam:PF12002 OMA:FEVIAPL RefSeq:YP_182021.1
ProteinModelPortal:Q3Z6X8 STRING:Q3Z6X8 GeneID:3229452
KEGG:det:DET1309 PATRIC:21609649
BioCyc:DETH243164:GJNF-1310-MONOMER Uniprot:Q3Z6X8
Length = 457
Score = 130 (50.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 64/267 (23%), Positives = 118/267 (44%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDT--IDRLTSE-NRLPHLLLYGPPGTGKTSTILAVARK 97
SP + RP+ L++ ++ RL E +++P L+ +GPPG+GKT+ +AR+
Sbjct: 21 SPLAARMRPEGLSEFVGQDHLIGEGRALRLAIEGDKIPSLIFWGPPGSGKTTLANIIARR 80
Query: 98 LYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDA 157
L A + + + ++A G+ +R+ +++ + + F + ++ + +DE K
Sbjct: 81 L-DAHF-SALSAVSA----GVADLRRVVEE--ARERLKFERRRTI--LFIDEIHRFNKSQ 130
Query: 158 QFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE-AE 216
Q A+ +E T A N ++ AL SR + PL ++ LK +E
Sbjct: 131 QDAILPYVEDGTVVLIGATTENPSFEVNSALLSRAQVYVLNPLSEKEISLILKRSLEDPS 190
Query: 217 GLD-----VTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIE 271
GL + E + GD R ALNIL+ M + ++ + G P +D
Sbjct: 191 GLGNYHARLLEEAEKHISSFAQGDARIALNILELAVMTTPP--DKDGWRVVGLPQVEDAA 248
Query: 272 QISYWLLNESFADSFKRISEM-KMRKG 297
Q ++S + IS + K +G
Sbjct: 249 QKKSLRYDKSGEQHYDLISALHKTMRG 275
>TIGR_CMR|BA_4703 [details] [associations]
symbol:BA_4703 "ATP-dependent protease LonB" species:198094
"Bacillus anthracis str. Ames" [GO:0004252 "serine-type
endopeptidase activity" evidence=ISS] [GO:0006508 "proteolysis"
evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0030436 "asexual sporulation" evidence=ISS] InterPro:IPR002078
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008268
InterPro:IPR008269 InterPro:IPR027065 Pfam:PF00004 Pfam:PF05362
PROSITE:PS01046 PROSITE:PS50045 SMART:SM00382 GO:GO:0005524
GO:GO:0006355 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006508 GO:GO:0006351
GO:GO:0004252 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 InterPro:IPR025943
PROSITE:PS00676 GO:GO:0004176 PANTHER:PTHR10046 HSSP:P08177
HOGENOM:HOG000054711 KO:K04076 OMA:LYFWNLL ProtClustDB:CLSK873492
InterPro:IPR014251 TIGRFAMs:TIGR02902 RefSeq:NP_846916.1
RefSeq:YP_021351.1 RefSeq:YP_030615.1 ProteinModelPortal:Q81LC0
IntAct:Q81LC0 DNASU:1083686 EnsemblBacteria:EBBACT00000010075
EnsemblBacteria:EBBACT00000014143 EnsemblBacteria:EBBACT00000022575
GeneID:1083686 GeneID:2816064 GeneID:2851723 KEGG:ban:BA_4703
KEGG:bar:GBAA_4703 KEGG:bat:BAS4368
BioCyc:BANT260799:GJAJ-4423-MONOMER
BioCyc:BANT261594:GJ7F-4571-MONOMER Uniprot:Q81LC0
Length = 557
Score = 101 (40.6 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 26/86 (30%), Positives = 43/86 (50%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTST---ILAVARKL 98
P EK RP S D+ D + ++ H+++YGPPG GKT+ +L A++
Sbjct: 59 PLAEKVRPTSFLDIVGQEDGIKSLKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKRN 118
Query: 99 YGAQYHN--MILELNAS----DDRGI 118
+ + +EL+A+ D+RGI
Sbjct: 119 PKSPFRTNATFIELDATTARFDERGI 144
Score = 73 (30.8 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 21/79 (26%), Positives = 40/79 (50%)
Query: 183 KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLC-NGDMRKALN 241
+I PA++SRC F L+ + + K+ + + + E G+ + NG R+A+N
Sbjct: 251 EIPPAIRSRCLEVFFRELDTEEIQKVAKNAADKVEMQIGENGIEMIGMYARNG--REAIN 308
Query: 242 ILQSTHMASQQITEEAVYL 260
++Q + A I EE ++
Sbjct: 309 LVQIS--AGMAINEERSFI 325
>UNIPROTKB|E1BPL7 [details] [associations]
symbol:RAD17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042325 "regulation of phosphorylation" evidence=IEA]
[GO:0008156 "negative regulation of DNA replication" evidence=IEA]
[GO:0007093 "mitotic cell cycle checkpoint" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000781 "chromosome,
telomeric region" evidence=IEA] [GO:0000077 "DNA damage checkpoint"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR003593 InterPro:IPR004582
InterPro:IPR018324 SMART:SM00382 GO:GO:0005524 GO:GO:0005634
GO:GO:0000077 GO:GO:0042325 GO:GO:0006281 GO:GO:0017111
GO:GO:0007093 GO:GO:0000781 GO:GO:0008156 PANTHER:PTHR12172
OMA:NYIDFFM TIGRFAMs:TIGR00602 GeneTree:ENSGT00440000039046
EMBL:DAAA02050051 IPI:IPI00904146 Ensembl:ENSBTAT00000002682
Uniprot:E1BPL7
Length = 681
Score = 115 (45.5 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDR-LTSE--NRLPH-----LLLYGPPGTGKTSTILA 93
PWV+KY+P++ ++A H+ ++ ++ L +E R P LL+ GPPG GKT+TI
Sbjct: 90 PWVDKYKPETQHELAVHKKKIEEVETWLKAEVLERQPKQGGSILLITGPPGCGKTTTIKI 149
Query: 94 VARKLYGAQYHNMI 107
+A++ +G Q I
Sbjct: 150 LAKE-HGIQVQEWI 162
Score = 59 (25.8 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 23/74 (31%), Positives = 36/74 (48%)
Query: 179 NQVNKIIPA-LQSRC--TRFRFAPLEPVHVTERLKHV-IEAE---GLDVTEG-GLAALVR 230
N + P +Q C + F P+ P + + L+ V +EA G V + L L +
Sbjct: 266 NSQRLLFPKEIQEECAISNISFNPVAPTIMMKFLRIVTVEANKNGGKIVPDKTSLEFLCQ 325
Query: 231 LCNGDMRKALNILQ 244
C+GD+R A+N LQ
Sbjct: 326 GCSGDIRSAINSLQ 339
>RGD|1309515 [details] [associations]
symbol:Rad17 "RAD17 homolog (S. pombe)" species:10116 "Rattus
norvegicus" [GO:0000077 "DNA damage checkpoint" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006974 "response to DNA
damage stimulus" evidence=ISO] [GO:0007093 "mitotic cell cycle
checkpoint" evidence=ISO] [GO:0008156 "negative regulation of DNA
replication" evidence=ISO] [GO:0042325 "regulation of
phosphorylation" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0000781 "chromosome, telomeric region"
evidence=ISO] InterPro:IPR003593 InterPro:IPR004582
InterPro:IPR018324 SMART:SM00382 RGD:1309515 GO:GO:0005524
GO:GO:0005634 GO:GO:0006281 GO:GO:0007049 GO:GO:0017111
eggNOG:COG0470 KO:K06662 PANTHER:PTHR12172 CTD:5884
HOVERGEN:HBG059834 OrthoDB:EOG4229J6 TIGRFAMs:TIGR00602
HOGENOM:HOG000013176 IPI:IPI00360297 EMBL:BC098057
RefSeq:NP_001019949.1 UniGene:Rn.154275 ProteinModelPortal:Q4V7A2
STRING:Q4V7A2 GeneID:310034 KEGG:rno:310034 UCSC:RGD:1309515
InParanoid:Q4V7A2 NextBio:661568 Genevestigator:Q4V7A2
Uniprot:Q4V7A2
Length = 686
Score = 110 (43.8 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 30/85 (35%), Positives = 48/85 (56%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRL---P-H----LLLYGPPGTGKTSTILA 93
PWV+KY+P++ ++A H+ ++ ++ L P H LL+ GPPG GKT+TI
Sbjct: 89 PWVDKYKPETQHELAVHKKKIEEVETWLKTQVLEVKPKHGGSILLITGPPGCGKTTTIKI 148
Query: 94 VARKLYGAQYH---NMILELNASDD 115
++++L G Q N IL+ DD
Sbjct: 149 LSKEL-GIQVQEWVNPILQDFQKDD 172
Score = 63 (27.2 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 188 LQSRCT--RFRFAPLEPVHVTERLKHVIEAE----GLDVTEGGLAALVRLC---NGDMRK 238
+Q C+ F P+ P + + L ++ E G +T A+L LC +GD+R
Sbjct: 275 IQEECSVSNISFNPVAPTIMMKFLNRIVTIEASKNGEKITVPNKASLELLCQGCSGDIRS 334
Query: 239 ALNILQ 244
A+N LQ
Sbjct: 335 AINSLQ 340
>UNIPROTKB|E9PTL1 [details] [associations]
symbol:Rad17 "Protein Rad17" species:10116 "Rattus
norvegicus" [GO:0000077 "DNA damage checkpoint" evidence=IEA]
[GO:0000781 "chromosome, telomeric region" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0007093
"mitotic cell cycle checkpoint" evidence=IEA] [GO:0008156 "negative
regulation of DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0042325
"regulation of phosphorylation" evidence=IEA] InterPro:IPR003593
InterPro:IPR004582 InterPro:IPR018324 SMART:SM00382 RGD:1309515
GO:GO:0005524 GO:GO:0005634 GO:GO:0000077 GO:GO:0042325
GO:GO:0006281 GO:GO:0017111 GO:GO:0007093 GO:GO:0000781
GO:GO:0008156 PANTHER:PTHR12172 OMA:NYIDFFM TIGRFAMs:TIGR00602
GeneTree:ENSGT00440000039046 IPI:IPI00360297
Ensembl:ENSRNOT00000024801 Uniprot:E9PTL1
Length = 686
Score = 110 (43.8 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 30/85 (35%), Positives = 48/85 (56%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRL---P-H----LLLYGPPGTGKTSTILA 93
PWV+KY+P++ ++A H+ ++ ++ L P H LL+ GPPG GKT+TI
Sbjct: 89 PWVDKYKPETQHELAVHKKKIEEVETWLKTQVLEVKPKHGGSILLITGPPGCGKTTTIKI 148
Query: 94 VARKLYGAQYH---NMILELNASDD 115
++++L G Q N IL+ DD
Sbjct: 149 LSKEL-GIQVQEWVNPILQDFQKDD 172
Score = 63 (27.2 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 188 LQSRCT--RFRFAPLEPVHVTERLKHVIEAE----GLDVTEGGLAALVRLC---NGDMRK 238
+Q C+ F P+ P + + L ++ E G +T A+L LC +GD+R
Sbjct: 275 IQEECSVSNISFNPVAPTIMMKFLNRIVTIEASKNGEKITVPNKASLELLCQGCSGDIRS 334
Query: 239 ALNILQ 244
A+N LQ
Sbjct: 335 AINSLQ 340
>TIGR_CMR|GSU_2230 [details] [associations]
symbol:GSU_2230 "DNA polymerase III, delta prime subunit"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR004622 GO:GO:0006260
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0008408 GO:GO:0003887
KO:K02341 TIGRFAMs:TIGR00678 HSSP:P28631 HOGENOM:HOG000192593
OMA:AFIKIDQ RefSeq:NP_953279.1 ProteinModelPortal:Q74AW9
GeneID:2687562 KEGG:gsu:GSU2230 PATRIC:22027315
ProtClustDB:CLSK828770 BioCyc:GSUL243231:GH27-2186-MONOMER
Uniprot:Q74AW9
Length = 323
Score = 122 (48.0 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 57/220 (25%), Positives = 94/220 (42%)
Query: 55 VAAHRDIVDTIDRLTSENRLPHLLLY-GPPGTGKTSTILAV-----------------AR 96
V V+ + R + H L+ G G GK +T LA R
Sbjct: 6 VLGQETAVNVLQRALRSGKTAHAYLFEGIEGCGKMTTALAFIEAAFCRRDDGCGSCPSCR 65
Query: 97 KLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
K+ G Q+ +L+ G + Q+++ S V+A +K ++D+AD +
Sbjct: 66 KMAGLQHP----DLHRLAPEGAFIKIDQVRELQRELSLR-PVEAPMKACIIDDADRLNPA 120
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
A AL + +E+ N L+ I+P ++SRC RF+PL P V E +++ +A
Sbjct: 121 AANALLKTLEEPPGNALLILLTTNPAGILPTVRSRCQLLRFSPL-PERVIE--EYLTDA- 176
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQ-STHMASQQITE 255
G + LAA L G + +AL + + S A Q + E
Sbjct: 177 GREPAAARLAA--SLAGGSLSRALEMEEGSAGTARQGLIE 214
>UNIPROTKB|I3L290 [details] [associations]
symbol:RAD17 "Cell cycle checkpoint protein RAD17"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR004582 InterPro:IPR018324
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0006281
GO:GO:0007049 GO:GO:0017111 PANTHER:PTHR12172 TIGRFAMs:TIGR00602
EMBL:AC145145 SMR:I3L290 Ensembl:ENST00000572356
Ensembl:ENST00000575406 Uniprot:I3L290
Length = 681
Score = 109 (43.4 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDR-LTSE--NRLPH-----LLLYGPPGTGKTSTILA 93
PWV+KY+P++ ++A H+ ++ ++ L ++ R P LL+ GPPG GKT+T L
Sbjct: 90 PWVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTT-LK 148
Query: 94 VARKLYGAQYHNMI 107
+ K +G Q I
Sbjct: 149 ILSKEHGIQVQEWI 162
Score = 61 (26.5 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 21/76 (27%), Positives = 35/76 (46%)
Query: 179 NQVNKIIPA-LQSRCT--RFRFAPLEPVHVTERLKHVIEAE----GLDVT---EGGLAAL 228
N + P +Q C+ F P+ P + + L ++ E G +T + L L
Sbjct: 266 NNQRLLFPKEIQEECSISNISFNPVAPTIMMKFLNRIVTIEANKNGGKITVPDKTSLELL 325
Query: 229 VRLCNGDMRKALNILQ 244
+ C+GD+R A+N LQ
Sbjct: 326 CQGCSGDIRSAINSLQ 341
>UNIPROTKB|O75943 [details] [associations]
symbol:RAD17 "Cell cycle checkpoint protein RAD17"
species:9606 "Homo sapiens" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000077 "DNA damage
checkpoint" evidence=IMP] [GO:0007093 "mitotic cell cycle
checkpoint" evidence=IMP] [GO:0042325 "regulation of
phosphorylation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0008156 "negative regulation of DNA replication"
evidence=IMP] [GO:0000076 "DNA replication checkpoint"
evidence=TAS] [GO:0000075 "cell cycle checkpoint" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006260 "DNA
replication" evidence=TAS] [GO:0000781 "chromosome, telomeric
region" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR003593
InterPro:IPR004582 InterPro:IPR018324 SMART:SM00382 GO:GO:0005524
GO:GO:0000077 Reactome:REACT_115566 GO:GO:0005654 GO:GO:0042325
GO:GO:0006260 GO:GO:0006281 GO:GO:0017111 GO:GO:0007093
eggNOG:COG0470 GO:GO:0008156 GO:GO:0000076 EMBL:CH471137 KO:K06662
PANTHER:PTHR12172 EMBL:AF076838 EMBL:AJ004977 EMBL:AF112263
EMBL:AF085736 EMBL:AJ001642 EMBL:AJ131296 EMBL:AJ131297
EMBL:AJ131298 EMBL:AJ131299 EMBL:AJ131300 EMBL:AJ131301
EMBL:AJ131302 EMBL:AJ131303 EMBL:AJ131304 EMBL:AJ131305
EMBL:AJ131306 EMBL:AJ131307 EMBL:AJ131308 EMBL:AF017748
EMBL:AF126424 EMBL:AF098533 EMBL:AF098534 EMBL:AL122068
EMBL:AK292487 EMBL:BX537441 EMBL:AY612854 EMBL:BC032304
IPI:IPI00107491 IPI:IPI00107492 IPI:IPI00334267 IPI:IPI00395702
PIR:T34548 RefSeq:NP_002864.1 RefSeq:NP_579916.1 RefSeq:NP_579917.1
RefSeq:NP_579918.1 RefSeq:NP_579919.1 RefSeq:NP_579920.1
RefSeq:NP_579921.1 RefSeq:NP_579922.1 UniGene:Hs.16184
ProteinModelPortal:O75943 SMR:O75943 DIP:DIP-24254N DIP:DIP-34896N
IntAct:O75943 STRING:O75943 PhosphoSite:O75943 PRIDE:O75943
DNASU:5884 Ensembl:ENST00000282891 Ensembl:ENST00000305138
Ensembl:ENST00000345306 Ensembl:ENST00000354312
Ensembl:ENST00000354868 Ensembl:ENST00000358030
Ensembl:ENST00000361732 Ensembl:ENST00000380774
Ensembl:ENST00000509734 Ensembl:ENST00000521422 GeneID:5884
KEGG:hsa:5884 UCSC:uc003jwg.3 UCSC:uc003jwm.3 UCSC:uc003jwn.3
CTD:5884 GeneCards:GC05P068700 HGNC:HGNC:9807 HPA:CAB004551
HPA:HPA005448 MIM:603139 neXtProt:NX_O75943 PharmGKB:PA34167
HOVERGEN:HBG059834 InParanoid:O75943 OMA:NYIDFFM OrthoDB:EOG4229J6
PhylomeDB:O75943 GenomeRNAi:5884 NextBio:22866 ArrayExpress:O75943
Bgee:O75943 CleanEx:HS_RAD17 Genevestigator:O75943
GermOnline:ENSG00000152942 TIGRFAMs:TIGR00602 Uniprot:O75943
Length = 681
Score = 109 (43.4 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDR-LTSE--NRLPH-----LLLYGPPGTGKTSTILA 93
PWV+KY+P++ ++A H+ ++ ++ L ++ R P LL+ GPPG GKT+T L
Sbjct: 90 PWVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTT-LK 148
Query: 94 VARKLYGAQYHNMI 107
+ K +G Q I
Sbjct: 149 ILSKEHGIQVQEWI 162
Score = 61 (26.5 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 21/76 (27%), Positives = 35/76 (46%)
Query: 179 NQVNKIIPA-LQSRCT--RFRFAPLEPVHVTERLKHVIEAE----GLDVT---EGGLAAL 228
N + P +Q C+ F P+ P + + L ++ E G +T + L L
Sbjct: 266 NNQRLLFPKEIQEECSISNISFNPVAPTIMMKFLNRIVTIEANKNGGKITVPDKTSLELL 325
Query: 229 VRLCNGDMRKALNILQ 244
+ C+GD+R A+N LQ
Sbjct: 326 CQGCSGDIRSAINSLQ 341
>UNIPROTKB|Q9KSZ8 [details] [associations]
symbol:VC_1108 "Putative uncharacterized protein"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004
SMART:SM00382 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0017111 KO:K07478 OMA:HDEPDAF ProtClustDB:PRK13342
InterPro:IPR021886 Pfam:PF12002 HSSP:Q56313 PIR:G82241
RefSeq:NP_230753.1 ProteinModelPortal:Q9KSZ8 SMR:Q9KSZ8
DNASU:2614378 GeneID:2614378 KEGG:vch:VC1108 PATRIC:20081310
Uniprot:Q9KSZ8
Length = 449
Score = 124 (48.7 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 58/213 (27%), Positives = 89/213 (41%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDT---IDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
P + RPQ++ + I+ + R + ++L+GPPGTGKT T+ VA
Sbjct: 16 PLAARMRPQTVEQYIGQQHILGPGKPLRRALEAGHIHSMILWGPPGTGKT-TLAEVA--- 71
Query: 99 YGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQ 158
A Y N +E ++ G+ +R I+ A S G + ++ +DE K Q
Sbjct: 72 --ANYANAEVERVSAVTSGVKEIRAAIEK-ARENKLS-GRRT---ILFVDEVHRFNKSQQ 124
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI-EAE- 216
A IE T A N ++ AL SR ++ L + + L I + E
Sbjct: 125 DAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLNQQEILQALHQAIADTER 184
Query: 217 GLD-----VTEGGLAALVRLCNGDMRKALNILQ 244
GL + L L L NGD R +LN L+
Sbjct: 185 GLGKVAAVFADNVLDRLAELVNGDARMSLNYLE 217
>TIGR_CMR|VC_1108 [details] [associations]
symbol:VC_1108 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0017111 KO:K07478
OMA:HDEPDAF ProtClustDB:PRK13342 InterPro:IPR021886 Pfam:PF12002
HSSP:Q56313 PIR:G82241 RefSeq:NP_230753.1 ProteinModelPortal:Q9KSZ8
SMR:Q9KSZ8 DNASU:2614378 GeneID:2614378 KEGG:vch:VC1108
PATRIC:20081310 Uniprot:Q9KSZ8
Length = 449
Score = 124 (48.7 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 58/213 (27%), Positives = 89/213 (41%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDT---IDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
P + RPQ++ + I+ + R + ++L+GPPGTGKT T+ VA
Sbjct: 16 PLAARMRPQTVEQYIGQQHILGPGKPLRRALEAGHIHSMILWGPPGTGKT-TLAEVA--- 71
Query: 99 YGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQ 158
A Y N +E ++ G+ +R I+ A S G + ++ +DE K Q
Sbjct: 72 --ANYANAEVERVSAVTSGVKEIRAAIEK-ARENKLS-GRRT---ILFVDEVHRFNKSQQ 124
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI-EAE- 216
A IE T A N ++ AL SR ++ L + + L I + E
Sbjct: 125 DAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLNQQEILQALHQAIADTER 184
Query: 217 GLD-----VTEGGLAALVRLCNGDMRKALNILQ 244
GL + L L L NGD R +LN L+
Sbjct: 185 GLGKVAAVFADNVLDRLAELVNGDARMSLNYLE 217
>GENEDB_PFALCIPARUM|PFA0545c [details] [associations]
symbol:PFA0545c "replication factor c protein,
putative" species:5833 "Plasmodium falciparum" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
Pfam:PF00004 SMART:SM00382 GO:GO:0005524 GO:GO:0006260
GO:GO:0017111 EMBL:AL844501 GO:GO:0005663 RefSeq:XP_001351041.1
ProteinModelPortal:Q8I233 EnsemblProtists:PFA0545c:mRNA
GeneID:813246 KEGG:pfa:PFA_0545c HOGENOM:HOG000283786
ProtClustDB:CLSZ2500531 Uniprot:Q8I233
Length = 1167
Score = 129 (50.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 53/259 (20%), Positives = 119/259 (45%)
Query: 11 DFDEDENQNLK--PKDNGK--NVIVSGTPPDIKASPWVEKYRPQ--SLADVAAHRDIVDT 64
D ++D N+N+ K K + +++ +++ W++K+ + + ++ + D+
Sbjct: 317 DDNDDNNKNINFVEKYRAKYFSELLTDESINLEVLLWLKKWNDKIRNEKNINTYNDM--N 374
Query: 65 IDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQ 123
+++T +N LLL G G GKT+ +A +++ I+E+N SDDR + +
Sbjct: 375 PEQVTKDNDFERVLLLGGSSGKGKTTLAYVIANHF---KFN--IIEINGSDDRNKETLIP 429
Query: 124 QIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQF--ALRRVIEKYTKNTRFAL----- 176
I+ S V + L ++DE D ++ Q ++ + + K K + +
Sbjct: 430 FIESVVCINS----VTSKPNLCIIDEIDGLSSTHQNIDSIMKFLNKKDKKNKSIIKRPII 485
Query: 177 -ICNQV-NKIIPALQ--SRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLC 232
ICN + +K + L+ S+ +E + + R+ ++ + E + + + L+ +C
Sbjct: 486 CICNDIYHKSLKELRKISKVVIVENINIEMLKI--RINYICDKENIKINNEAINKLIDIC 543
Query: 233 NGDMRKALNILQSTHMASQ 251
D+R LN + + S+
Sbjct: 544 KSDIRSILNTIYFLSIGSR 562
>UNIPROTKB|Q8I233 [details] [associations]
symbol:PFA_0545c "Replication factor c protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
Pfam:PF00004 SMART:SM00382 GO:GO:0005524 GO:GO:0006260
GO:GO:0017111 EMBL:AL844501 GO:GO:0005663 RefSeq:XP_001351041.1
ProteinModelPortal:Q8I233 EnsemblProtists:PFA0545c:mRNA
GeneID:813246 KEGG:pfa:PFA_0545c HOGENOM:HOG000283786
ProtClustDB:CLSZ2500531 Uniprot:Q8I233
Length = 1167
Score = 129 (50.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 53/259 (20%), Positives = 119/259 (45%)
Query: 11 DFDEDENQNLK--PKDNGK--NVIVSGTPPDIKASPWVEKYRPQ--SLADVAAHRDIVDT 64
D ++D N+N+ K K + +++ +++ W++K+ + + ++ + D+
Sbjct: 317 DDNDDNNKNINFVEKYRAKYFSELLTDESINLEVLLWLKKWNDKIRNEKNINTYNDM--N 374
Query: 65 IDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQ 123
+++T +N LLL G G GKT+ +A +++ I+E+N SDDR + +
Sbjct: 375 PEQVTKDNDFERVLLLGGSSGKGKTTLAYVIANHF---KFN--IIEINGSDDRNKETLIP 429
Query: 124 QIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQF--ALRRVIEKYTKNTRFAL----- 176
I+ S V + L ++DE D ++ Q ++ + + K K + +
Sbjct: 430 FIESVVCINS----VTSKPNLCIIDEIDGLSSTHQNIDSIMKFLNKKDKKNKSIIKRPII 485
Query: 177 -ICNQV-NKIIPALQ--SRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLC 232
ICN + +K + L+ S+ +E + + R+ ++ + E + + + L+ +C
Sbjct: 486 CICNDIYHKSLKELRKISKVVIVENINIEMLKI--RINYICDKENIKINNEAINKLIDIC 543
Query: 233 NGDMRKALNILQSTHMASQ 251
D+R LN + + S+
Sbjct: 544 KSDIRSILNTIYFLSIGSR 562
>FB|FBgn0015376 [details] [associations]
symbol:cutlet "cutlet" species:7227 "Drosophila melanogaster"
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0006260 "DNA replication"
evidence=ISS;NAS] [GO:0003677 "DNA binding" evidence=NAS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 EMBL:AE014134 GO:GO:0008283
GO:GO:0017111 eggNOG:COG0470 KO:K11269 GeneTree:ENSGT00550000075029
RefSeq:NP_787969.1 ProteinModelPortal:Q8IQ05 SMR:Q8IQ05
STRING:Q8IQ05 PaxDb:Q8IQ05 EnsemblMetazoa:FBtr0077541 GeneID:44637
KEGG:dme:Dmel_CG33122 UCSC:CG33122-RA CTD:44637 FlyBase:FBgn0015376
InParanoid:Q8IQ05 OMA:KRPNCIV OrthoDB:EOG44F4RB PhylomeDB:Q8IQ05
GenomeRNAi:44637 NextBio:837492 ArrayExpress:Q8IQ05 Bgee:Q8IQ05
Uniprot:Q8IQ05
Length = 993
Score = 128 (50.1 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 56/199 (28%), Positives = 85/199 (42%)
Query: 78 LLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFG 137
LL GPPG GKT+ +AR A Y+ + E+NASDDR + + +++ + S
Sbjct: 424 LLCGPPGLGKTTLAHTIARH---AGYN--VREINASDDRSPEAFKLALEN-GTQMSSVLN 477
Query: 138 VKASVKLVLLDEADAMTKDAQFALRRVIEK--YTK-NTRFA------------LICNQVN 182
++LDE D + + L + I YTK + A ICN V
Sbjct: 478 EDKRPNCIVLDEIDGAPRQSIDYLVKFISDAVYTKVKAKGAKAEHNVLKRPIICICNDVY 537
Query: 183 KIIPALQS-RCTRF--RFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKA 239
PAL+ R F F P++ + ERL + E L G L AL D+R
Sbjct: 538 D--PALRPLRQVAFVVTFPPIDAARLAERLVKIAFKEQLKTDFGSLIALAEKSGNDVRSC 595
Query: 240 LNILQSTHMASQQITEEAV 258
++ +Q + +T + V
Sbjct: 596 ISSMQFFNAQKHSLTLQDV 614
Score = 44 (20.5 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 43 WVEKYRPQSLADV 55
WV+KY+P+ D+
Sbjct: 322 WVDKYKPRKYIDL 334
>UNIPROTKB|F1RWX5 [details] [associations]
symbol:WRNIP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0030174 "regulation of DNA-dependent DNA replication
initiation" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0016887 GO:GO:0000731 GO:GO:0030174 InterPro:IPR021886
Pfam:PF12002 OMA:PGHWDAD GeneTree:ENSGT00390000008538 EMBL:CU041352
Ensembl:ENSSSCT00000001102 Uniprot:F1RWX5
Length = 512
Score = 124 (48.7 bits), Expect = 8.4e-05, Sum P(2) = 8.4e-05
Identities = 52/194 (26%), Positives = 84/194 (43%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIV--DTIDR-LTSENRLPHLLLYGPPGTGKTSTILAV 94
++ P ++ RP +L D V +T+ R L N +P L+L+GPPG GKT+ +
Sbjct: 69 LEGKPLADRLRPDALQDFVGQGRAVGPETLLRSLLEANEVPSLILWGPPGCGKTTLAHII 128
Query: 95 ARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAM 153
A ++ H++ + L+A+ + DV R I+ + +SF F K ++ +DE
Sbjct: 129 ANN---SKKHSIRFVTLSATSAKTTDV-RDVIKQAQNEKSF-FKRKT---ILFIDEIHRF 180
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
K Q +E T A N ++ AL SRC L V L I
Sbjct: 181 NKSQQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAVVTILMRAI 240
Query: 214 EAEGLDVTEGGLAA 227
+ G+ V + A
Sbjct: 241 NSLGIHVLDSSRPA 254
Score = 40 (19.1 bits), Expect = 8.4e-05, Sum P(2) = 8.4e-05
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 220 VTEGGLAALVRLCNGDMRKALNILQSTHMA 249
+ + + L L +GD R LN LQ +A
Sbjct: 271 IEDKAVDTLAHLSDGDARAGLNGLQLAVLA 300
>UNIPROTKB|F1P1N3 [details] [associations]
symbol:WRNIP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000731
"DNA synthesis involved in DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0030174 "regulation
of DNA-dependent DNA replication initiation" evidence=IEA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0016887 GO:GO:0000731 GO:GO:0030174 InterPro:IPR021886
Pfam:PF12002 OMA:PGHWDAD GeneTree:ENSGT00390000008538 EMBL:AC157662
IPI:IPI00597973 Ensembl:ENSGALT00000020968 ArrayExpress:F1P1N3
Uniprot:F1P1N3
Length = 559
Score = 109 (43.4 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 51/199 (25%), Positives = 89/199 (44%)
Query: 21 KPKDNGKNVIVSGTPPD-IKASPWVEKYRPQSLADVAAHRDIVD--TIDR-LTSENRLPH 76
+P++ G + + ++ P ++ RP +L D ++ T+ R L + +P
Sbjct: 97 QPEEGGGPTLRGASVAQRLEGQPLADRLRPDTLRDYVGQERVLGAHTLLRSLLESHEIPS 156
Query: 77 LLLYGPPGTGKTST--ILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSF 134
L+L+GPPG GKT+ I+A + K G ++ + L+A+ + DV R I A +
Sbjct: 157 LILWGPPGCGKTTLAHIIANSSKKKGMRF----VTLSATSAKTNDV-RDVISQ-AQNEKR 210
Query: 135 SFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTR 194
F K ++ +DE K Q +E T A N ++ AL SRC
Sbjct: 211 LFKRKT---ILFIDEIHRFNKSQQDTFLPHVECGTVTLIGATTENPSFQVNAALLSRC-- 265
Query: 195 FRFAPLEPVHVTERLKHVI 213
R LE + V E ++ ++
Sbjct: 266 -RVIVLEKLSV-EAMEAIL 282
Score = 56 (24.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 220 VTEGGLAALVRLCNGDMRKALNILQ 244
+ E L+ L LC+GD R LN LQ
Sbjct: 318 IEEKALSTLAYLCDGDARTGLNGLQ 342
>POMBASE|SPAC26H5.02c [details] [associations]
symbol:SPAC26H5.02c "DNA replication ATPase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000731
"DNA synthesis involved in DNA repair" evidence=ISS] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0033567 "DNA replication,
Okazaki fragment processing" evidence=ISO] [GO:0043142
"single-stranded DNA-dependent ATPase activity" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR006642 Pfam:PF00004 SMART:SM00382
SMART:SM00734 PomBase:SPAC26H5.02c GO:GO:0005524 GO:GO:0005634
EMBL:CU329670 GO:GO:0046872 GO:GO:0003677 GO:GO:0000731
GO:GO:0043142 GO:GO:0033567 eggNOG:COG2256 HOGENOM:HOG000017623
KO:K07478 OMA:HDEPDAF InterPro:IPR021886 Pfam:PF12002 HSSP:P38251
PIR:T38421 RefSeq:NP_594449.2 ProteinModelPortal:O13984
STRING:O13984 EnsemblFungi:SPAC26H5.02c.1 GeneID:2542096
KEGG:spo:SPAC26H5.02c OrthoDB:EOG4Z924S NextBio:20803168
Uniprot:O13984
Length = 504
Score = 122 (48.0 bits), Expect = 0.00013, P = 0.00013
Identities = 55/213 (25%), Positives = 96/213 (45%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDT---IDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
P E+ RP+SL + ++V I L ++R ++L+G GTGKT+ LA +L
Sbjct: 85 PLAERARPKSLDEYVGQEELVGERGIIRNLIEQDRCNSMILWGSAGTGKTT--LA---RL 139
Query: 99 YGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQ 158
+ +E++A+ D ++I F +Q++ + ++ LDE + Q
Sbjct: 140 IAVTTKSRFIEISATSTTVADC--RKI--FEDSQNY-LTLTGRKTIIFLDEVHRFNRAQQ 194
Query: 159 FALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKH--VIEAE 216
++EK A N ++ AL SRC F L +V + L H ++E+E
Sbjct: 195 DIFLPMVEKGLVTLIGATTENPSFRLNSALISRCPVFVLKKLTRDNVKKILNHACLLESE 254
Query: 217 GL-----DVTEGGLAALVRLCNGDMRKALNILQ 244
L +V + + + +GD R ALN L+
Sbjct: 255 RLGSSMPNVETSIIDYISAITDGDARMALNALE 287
>UNIPROTKB|D6RAW6 [details] [associations]
symbol:RAD17 "Cell cycle checkpoint protein RAD17"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] InterPro:IPR004582 GO:GO:0005634 GO:GO:0006281
GO:GO:0007049 EMBL:AC145132 EMBL:AC145146 PANTHER:PTHR12172
HGNC:HGNC:9807 EMBL:AC145145 IPI:IPI00965621 SMR:D6RAW6
Ensembl:ENST00000506564 Ensembl:ENST00000575747 Uniprot:D6RAW6
Length = 169
Score = 109 (43.4 bits), Expect = 0.00021, P = 0.00021
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDR-LTSE--NRLPH-----LLLYGPPGTGKTSTILA 93
PWV+KY+P++ ++A H+ ++ ++ L ++ R P LL+ GPPG GKT+T L
Sbjct: 79 PWVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTT-LK 137
Query: 94 VARKLYGAQYHNMI 107
+ K +G Q I
Sbjct: 138 ILSKEHGIQVQEWI 151
>UNIPROTKB|Q2GG32 [details] [associations]
symbol:ECH_0803 "Putative uncharacterized protein"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003593 SMART:SM00382 GO:GO:0000166 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0017111 eggNOG:COG0470 KO:K02341
RefSeq:YP_507601.1 ProteinModelPortal:Q2GG32 STRING:Q2GG32
GeneID:3927824 KEGG:ech:ECH_0803 PATRIC:20577034
HOGENOM:HOG000063483 OMA:VREMKNF ProtClustDB:CLSK749552
BioCyc:ECHA205920:GJNR-806-MONOMER Uniprot:Q2GG32
Length = 295
Score = 116 (45.9 bits), Expect = 0.00023, P = 0.00023
Identities = 33/130 (25%), Positives = 68/130 (52%)
Query: 78 LLYGPPGTGKTSTILAVARKLYGAQYHNM----ILELNASDDR-GIDVVRQQIQDFASTQ 132
L+YG G GK + A+ L + Y N +L +N +++ GID +R I++F
Sbjct: 24 LIYGNRGIGKATLAYRFAKYLTQSTYLNHYNPDLLTINDNEEIIGIDKIRN-IKNFLYLS 82
Query: 133 SFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRC 192
+ + ++V++D D++T +A A+ +++E+ N+ LI + ++++ ++SRC
Sbjct: 83 T----ARLKYRIVIVDSIDSLTINATNAMLKILEETPNNSIIILISHNLHEVPTVVRSRC 138
Query: 193 TRFRFAPLEP 202
+ L P
Sbjct: 139 FTLGLSDLNP 148
>TIGR_CMR|ECH_0803 [details] [associations]
symbol:ECH_0803 "conserved hypothetical protein"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003593 SMART:SM00382 GO:GO:0000166 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0017111 eggNOG:COG0470 KO:K02341
RefSeq:YP_507601.1 ProteinModelPortal:Q2GG32 STRING:Q2GG32
GeneID:3927824 KEGG:ech:ECH_0803 PATRIC:20577034
HOGENOM:HOG000063483 OMA:VREMKNF ProtClustDB:CLSK749552
BioCyc:ECHA205920:GJNR-806-MONOMER Uniprot:Q2GG32
Length = 295
Score = 116 (45.9 bits), Expect = 0.00023, P = 0.00023
Identities = 33/130 (25%), Positives = 68/130 (52%)
Query: 78 LLYGPPGTGKTSTILAVARKLYGAQYHNM----ILELNASDDR-GIDVVRQQIQDFASTQ 132
L+YG G GK + A+ L + Y N +L +N +++ GID +R I++F
Sbjct: 24 LIYGNRGIGKATLAYRFAKYLTQSTYLNHYNPDLLTINDNEEIIGIDKIRN-IKNFLYLS 82
Query: 133 SFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRC 192
+ + ++V++D D++T +A A+ +++E+ N+ LI + ++++ ++SRC
Sbjct: 83 T----ARLKYRIVIVDSIDSLTINATNAMLKILEETPNNSIIILISHNLHEVPTVVRSRC 138
Query: 193 TRFRFAPLEP 202
+ L P
Sbjct: 139 FTLGLSDLNP 148
>UNIPROTKB|I3LTZ5 [details] [associations]
symbol:LOC100624938 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0007049 "cell cycle" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR004582 InterPro:IPR018324 GO:GO:0005634 GO:GO:0006281
GO:GO:0007049 PANTHER:PTHR12172 OMA:NYIDFFM TIGRFAMs:TIGR00602
GeneTree:ENSGT00440000039046 Ensembl:ENSSSCT00000030759
Uniprot:I3LTZ5
Length = 596
Score = 108 (43.1 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 26/74 (35%), Positives = 44/74 (59%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDR-LTSE--NRLPH-----LLLYGPPGTGKTSTILA 93
PWV+KY+P++ ++A H+ ++ ++ L E R P LL+ GPPG GKT+TI
Sbjct: 90 PWVDKYKPETQHELAVHKKKIEEVETWLKVEVLERQPTQGGSILLITGPPGCGKTATIKI 149
Query: 94 VARKLYGAQYHNMI 107
++++ +G Q I
Sbjct: 150 LSKE-HGIQVQEWI 162
Score = 55 (24.4 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 188 LQSRC--TRFRFAPLEPVHVTERLKHVIEAE-----GLDVT--EGGLAALVRLCNGDMRK 238
+Q C + F P+ P + + L ++ E G + + L L + C+GD+R
Sbjct: 276 IQEECAISNISFNPVAPTIMMKFLNRIVTKEANKNGGKIIVPDKTSLELLCQGCSGDIRS 335
Query: 239 ALNILQ 244
A+N LQ
Sbjct: 336 AINSLQ 341
>WB|WBGene00010676 [details] [associations]
symbol:K08F4.1 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
Pfam:PF00004 SMART:SM00382 GO:GO:0005524 GO:GO:0006974
GO:GO:0017111 eggNOG:COG0470 KO:K11269 GeneTree:ENSGT00550000075029
EMBL:Z68879 PIR:T23478 RefSeq:NP_501841.1 ProteinModelPortal:Q21350
SMR:Q21350 PaxDb:Q21350 EnsemblMetazoa:K08F4.1.1
EnsemblMetazoa:K08F4.1.2 EnsemblMetazoa:K08F4.1.3 GeneID:177879
KEGG:cel:CELE_K08F4.1 UCSC:K08F4.1.2 CTD:177879 WormBase:K08F4.1
HOGENOM:HOG000017144 InParanoid:Q21350 OMA:LRCDLST NextBio:898772
Uniprot:Q21350
Length = 850
Score = 126 (49.4 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 55/184 (29%), Positives = 85/184 (46%)
Query: 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSF 136
LLL GP G GK++ VAR+ A Y +++NASD R + + + ++ T S +
Sbjct: 333 LLLSGPAGLGKSTLARIVARQ---AGYST--IDVNASDARTVADLNKVLEGAVKT-SRTL 386
Query: 137 GVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNT-RFALI--CNQVNKIIPALQSR-- 191
++LDE D D L R I+ K R +I CN N PAL+
Sbjct: 387 DADQRPACLILDEIDGTPIDTIRHLVRCIQATGKKAIRRPIIGICN--NLYTPALRDLRG 444
Query: 192 ---CTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM 248
C + A + V + +RL+ + + E L L L LC DMR ++N LQ +
Sbjct: 445 VAWCVQL-VATKQDV-LAKRLEEICDRERLRCDLSTLRKLCELCANDMRHSINTLQWVAV 502
Query: 249 ASQQ 252
A+++
Sbjct: 503 AARK 506
Score = 39 (18.8 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 39 KASPWVEKYRPQSLADV 55
++S WV KY ++ +D+
Sbjct: 261 ESSLWVNKYEAKNFSDL 277
>UNIPROTKB|E2R410 [details] [associations]
symbol:RAD17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042325 "regulation of phosphorylation"
evidence=IEA] [GO:0008156 "negative regulation of DNA replication"
evidence=IEA] [GO:0007093 "mitotic cell cycle checkpoint"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000781
"chromosome, telomeric region" evidence=IEA] [GO:0000077 "DNA
damage checkpoint" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004582 InterPro:IPR018324 GO:GO:0005634
GO:GO:0000077 GO:GO:0042325 GO:GO:0006281 GO:GO:0007093
GO:GO:0000781 GO:GO:0008156 KO:K06662 PANTHER:PTHR12172 CTD:5884
OMA:NYIDFFM TIGRFAMs:TIGR00602 GeneTree:ENSGT00440000039046
EMBL:AAEX03001497 RefSeq:XP_535265.2 Ensembl:ENSCAFT00000012439
GeneID:478088 KEGG:cfa:478088 Uniprot:E2R410
Length = 680
Score = 108 (43.1 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 28/85 (32%), Positives = 50/85 (58%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDR-LTSE--NRLPH-----LLLYGPPGTGKTSTILA 93
PWV+KY+P++ ++A H+ ++ ++ L ++ R P LL+ GPPG GKT+T+
Sbjct: 87 PWVDKYKPETQHELAVHKKKIEEVETWLKAKVIERQPKQGGSILLITGPPGCGKTTTVKI 146
Query: 94 VARKLYGAQ---YHNMILELNASDD 115
++++ +G Q + N IL DD
Sbjct: 147 LSKE-HGIQVQEWSNPILPDFQKDD 170
Score = 56 (24.8 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 20/76 (26%), Positives = 33/76 (43%)
Query: 179 NQVNKIIPA-LQSRCT--RFRFAPLEPVHVTERLKHVIEAE-----GLDVT--EGGLAAL 228
N + P +Q C F P+ P + + L ++ E G + + L L
Sbjct: 263 NNQRLLFPKEIQEECAIANISFNPVAPTIMMKFLNRIVTMEANKNGGNTIVPDKTSLELL 322
Query: 229 VRLCNGDMRKALNILQ 244
+ C+GD+R A+N LQ
Sbjct: 323 CQGCSGDIRSAINSLQ 338
>UNIPROTKB|Q607H8 [details] [associations]
symbol:MCA1782 "ATPase, AAA family" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
GO:GO:0017111 EMBL:AE017282 GenomeReviews:AE017282_GR
HOGENOM:HOG000017623 KO:K07478 OMA:HDEPDAF ProtClustDB:PRK13342
InterPro:IPR021886 Pfam:PF12002 RefSeq:YP_114220.1
ProteinModelPortal:Q607H8 SMR:Q607H8 GeneID:3102211
KEGG:mca:MCA1782 PATRIC:22607406 Uniprot:Q607H8
Length = 435
Score = 118 (46.6 bits), Expect = 0.00028, P = 0.00028
Identities = 56/232 (24%), Positives = 102/232 (43%)
Query: 40 ASPWVEKYRPQSLADVAAHRDIVDT---IDRLTSENRLPHLLLYGPPGTGKTSTILAVAR 96
+ P ++ RP++L + +++ + RL ++ +GPPGTGKT+ VAR
Sbjct: 6 SQPLADRLRPRTLDEYIGQLHLIEPGRPLYESIRRGRLHSMIFWGPPGTGKTTLARLVAR 65
Query: 97 KLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
A++ + L+ G+ +R+ + + Q + G +A ++ +DE K
Sbjct: 66 HA-DAEFLPVSAVLS-----GVKEIREALA--RAVQFKAAGRRA---ILFVDEVHRFNKS 114
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI-EA 215
Q A +E T + A N ++ AL SR + L + + + +A
Sbjct: 115 QQDAFLAHVEDGTVSFIGATTENPSFEVNSALLSRARVYVLKALTEADLLGVIDRALSDA 174
Query: 216 E------GLDVTEGGLAALVRLCNGDMRKALNILQSTHM---ASQQITEEAV 258
E GL++++ A VR +GD R+ LN+L+ T A Q + E V
Sbjct: 175 ERGLGGRGLNMSDPVRMAYVRAADGDARRLLNLLEITADLLDAGQTVVSEEV 226
>ASPGD|ASPL0000045765 [details] [associations]
symbol:AN8876 species:162425 "Emericella nidulans"
[GO:0006281 "DNA repair" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0033314 "mitotic DNA replication checkpoint" evidence=IEA]
[GO:0031573 "intra-S DNA damage checkpoint" evidence=IEA]
[GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IEA]
InterPro:IPR004582 GO:GO:0005634 EMBL:BN001307 GO:GO:0006281
GO:GO:0007049 PANTHER:PTHR12172 EnsemblFungi:CADANIAT00007996
HOGENOM:HOG000169019 OMA:AVHKRKV Uniprot:C8VLU6
Length = 766
Score = 121 (47.7 bits), Expect = 0.00029, P = 0.00029
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 28 NVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDR-----LTSENRLPHLLLYGP 82
N + + TP + A PW ++Y P +L ++A H+ V ++R L + R L+L GP
Sbjct: 116 NELPNPTPSEKGALPWAQRYAPLNLDELAVHKRKVGDVERWLSDALEGKTRKNLLILRGP 175
Query: 83 PGTGKTSTILAVARKL 98
G+GKT+TI +++KL
Sbjct: 176 AGSGKTTTISLLSKKL 191
>TIGR_CMR|APH_1348 [details] [associations]
symbol:APH_1348 "DNA polymerase III, subunits gamma and
tau" species:212042 "Anaplasma phagocytophilum HZ" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 OMA:TCARIVS ProtClustDB:PRK14964
RefSeq:YP_505851.1 ProteinModelPortal:Q2GIF0 STRING:Q2GIF0
GeneID:3930792 KEGG:aph:APH_1348 PATRIC:20951496
BioCyc:APHA212042:GHPM-1348-MONOMER Uniprot:Q2GIF0
Length = 456
Score = 118 (46.6 bits), Expect = 0.00031, P = 0.00031
Identities = 59/268 (22%), Positives = 113/268 (42%)
Query: 46 KYRPQSLADVAAHRDIVDTIDRLTSENRL-PHLLLYGPPGTGKTSTILAVARKLY----- 99
KYRP + D+ +V + S L LL+ G G GKT+ V+ L
Sbjct: 6 KYRPSNFDDLVGQDVLVRILRNSFSVGNLNTPLLMVGASGVGKTTCARIVSLCLNCENGP 65
Query: 100 -----GA--------QYHNM-ILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLV 145
G HN ++E++A+ + +D +R ++ S V + K+
Sbjct: 66 TSSPCGTCATCTSIKNSHNPDVVEMDAASNTSVDDIRVILES-----SNYLPVSSRFKVY 120
Query: 146 LLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHV 205
++DE ++ A AL + +E ++ +F + +V K+ + SRC R L +
Sbjct: 121 IIDEVHMLSTSAFNALLKTLESPAQHAKFIMATTEVRKVPVTVASRCLRLDLGKLPIKQL 180
Query: 206 TERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNIL-QSTHMASQQITEEAVYLCTGN 264
+ L + E + E L + +G +R +L +L Q+ ++ +I+ + V G
Sbjct: 181 YDHLVKISAKENIAHDESSLMLIAENSSGSVRNSLFLLEQALIYSNNKISLQEVRELLGC 240
Query: 265 PLPKDIEQISYWLLN---ESFADSFKRI 289
K +E I +++ +S D F+ +
Sbjct: 241 VDKKILEGIVRDIISSDVKSAIDGFREL 268
>UNIPROTKB|Q96S55 [details] [associations]
symbol:WRNIP1 "ATPase WRNIP1" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0016887 "ATPase activity" evidence=IMP]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=IDA]
[GO:0030174 "regulation of DNA-dependent DNA replication
initiation" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0042802 "identical protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=IMP] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR006642
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 SMART:SM00734
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0016887
EMBL:CH471087 GO:GO:0000731 GO:GO:0030174 PDB:3VHT PDBsum:3VHT
EMBL:AL139092 eggNOG:COG2256 InterPro:IPR021886 Pfam:PF12002
EMBL:AB056152 EMBL:AK026179 EMBL:AK315471 EMBL:AB209723
EMBL:AK223593 EMBL:BC018923 EMBL:AF218313 IPI:IPI00102997
IPI:IPI00290314 IPI:IPI00642533 IPI:IPI00645459 RefSeq:NP_064520.2
RefSeq:NP_569079.1 UniGene:Hs.236828 PDB:3VHS PDBsum:3VHS
ProteinModelPortal:Q96S55 SMR:Q96S55 IntAct:Q96S55 STRING:Q96S55
PhosphoSite:Q96S55 DMDM:73622085 PaxDb:Q96S55 PRIDE:Q96S55
DNASU:56897 Ensembl:ENST00000380764 Ensembl:ENST00000380769
Ensembl:ENST00000380771 Ensembl:ENST00000380773 GeneID:56897
KEGG:hsa:56897 UCSC:uc003mtz.3 UCSC:uc003mua.3 CTD:56897
GeneCards:GC06P002710 H-InvDB:HIX0005529 HGNC:HGNC:20876
HPA:HPA031752 MIM:608196 neXtProt:NX_Q96S55 PharmGKB:PA134982239
HOVERGEN:HBG062192 InParanoid:Q96S55 OMA:PGHWDAD OrthoDB:EOG457568
PhylomeDB:Q96S55 GenomeRNAi:56897 NextBio:62333 Bgee:Q96S55
CleanEx:HS_WRNIP1 Genevestigator:Q96S55 GermOnline:ENSG00000124535
Uniprot:Q96S55
Length = 665
Score = 120 (47.3 bits), Expect = 0.00031, P = 0.00031
Identities = 51/189 (26%), Positives = 83/189 (43%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIV--DTIDR-LTSENRLPHLLLYGPPGTGKTSTILAV 94
++ P + RP +L D V DT+ R L N +P L+L+GPPG GKT+ +
Sbjct: 222 LQGKPLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNEIPSLILWGPPGCGKTTLAHII 281
Query: 95 ARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAM 153
A ++ H++ + L+A++ + DV R I+ + +SF F K ++ +DE
Sbjct: 282 ASN---SKKHSIRFVTLSATNAKTNDV-RDVIKQAQNEKSF-FKRKT---ILFIDEIHRF 333
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
K Q +E T A N ++ AL SRC L + L I
Sbjct: 334 NKSQQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAI 393
Query: 214 EAEGLDVTE 222
+ G+ V +
Sbjct: 394 NSLGIHVLD 402
>CGD|CAL0001352 [details] [associations]
symbol:orf19.3019 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0033567 "DNA replication, Okazaki fragment processing"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=IEA]
[GO:0006282 "regulation of DNA repair" evidence=IEA] [GO:0008047
"enzyme activator activity" evidence=IEA] [GO:0043142
"single-stranded DNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
CGD:CAL0001352 GO:GO:0005524 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0017111 eggNOG:COG2256 KO:K07478 InterPro:IPR021886
Pfam:PF12002 RefSeq:XP_721246.1 RefSeq:XP_721517.1
ProteinModelPortal:Q5AI33 STRING:Q5AI33 GeneID:3636898
GeneID:3637179 KEGG:cal:CaO19.10537 KEGG:cal:CaO19.3019
Uniprot:Q5AI33
Length = 678
Score = 120 (47.3 bits), Expect = 0.00032, P = 0.00032
Identities = 57/219 (26%), Positives = 91/219 (41%)
Query: 42 PWVEKYRPQSLADVAAHRDIVD---TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98
P + RP+SL D +V + + + +P LL+G PG GKTS +A K
Sbjct: 165 PLAHRLRPKSLDDFFGQEKLVGENGALRNIIQADIIPSFLLWGVPGIGKTSLARIIA-KT 223
Query: 99 YGAQYHNMILELNASDDRGIDVVRQQIQD-FASTQSFSFGVKASVKLVLLDEADAMTKDA 157
++ +EL+ GID +++++ F ++ + ++ LDE K
Sbjct: 224 TSCKF----VELS-----GIDSNAKRLKEVFVQAENHK-NLSGQRTILFLDEIHRFNKAV 273
Query: 158 QFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEP---VHVTERL----- 209
Q L VIEK T A N + AL SR F PL + + R
Sbjct: 274 QDLLLPVIEKGTLTVIGATTENPSFNLNNALLSRMHTFVMEPLTVDSLIKILTRALFEVN 333
Query: 210 ---KHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245
K++ + + + + LC GD R ALNIL++
Sbjct: 334 RVRKNLYGLHYISLQKDAYHYIAELCMGDSRVALNILET 372
>MGI|MGI:1926153 [details] [associations]
symbol:Wrnip1 "Werner helicase interacting protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=ISO] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030174 "regulation of DNA-dependent DNA
replication initiation" evidence=ISO] [GO:0042802 "identical
protein binding" evidence=ISO] [GO:0048471 "perinuclear region of
cytoplasm" evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR006642 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
SMART:SM00734 MGI:MGI:1926153 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0003677 GO:GO:0006260
GO:GO:0016887 GO:GO:0000731 GO:GO:0030174 EMBL:AL645808
eggNOG:COG2256 KO:K07478 InterPro:IPR021886 Pfam:PF12002 CTD:56897
HOVERGEN:HBG062192 OMA:PGHWDAD OrthoDB:EOG457568 EMBL:AB056151
EMBL:AK041886 EMBL:AK050368 EMBL:AK082078 EMBL:AK167570
EMBL:AK170542 EMBL:AK170846 EMBL:BC010482 EMBL:BC058744
EMBL:AF208046 IPI:IPI00459468 IPI:IPI00648000 RefSeq:NP_084491.3
UniGene:Mm.286680 ProteinModelPortal:Q91XU0 SMR:Q91XU0
STRING:Q91XU0 PhosphoSite:Q91XU0 PaxDb:Q91XU0 PRIDE:Q91XU0
Ensembl:ENSMUST00000021832 GeneID:78903 KEGG:mmu:78903
UCSC:uc007pzs.2 UCSC:uc007pzt.2 GeneTree:ENSGT00390000008538
InParanoid:Q91XU0 NextBio:349714 Bgee:Q91XU0 CleanEx:MM_WRNIP1
Genevestigator:Q91XU0 GermOnline:ENSMUSG00000021400 Uniprot:Q91XU0
Length = 660
Score = 123 (48.4 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 51/189 (26%), Positives = 84/189 (44%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIV--DTIDR-LTSENRLPHLLLYGPPGTGKTSTILAV 94
++ P +K RP +L D V +T+ R L N +P L+L+GPPG GKT+ +
Sbjct: 217 LEGKPLADKMRPDTLQDYIGQSRAVGQETLLRSLLEANEIPSLILWGPPGCGKTTLAHII 276
Query: 95 ARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAM 153
A ++ H++ + L+A++ + DV R I+ + +SF F K ++ +DE
Sbjct: 277 ANN---SKKHSIRFVTLSATNAKTNDV-RDVIKQAQNEKSF-FKRKT---ILFIDEIHRF 328
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
K Q +E T A N ++ AL SRC L + L I
Sbjct: 329 NKSQQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAI 388
Query: 214 EAEGLDVTE 222
+ G+ V +
Sbjct: 389 NSLGIHVLD 397
Score = 38 (18.4 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 220 VTEGGLAALVRLCNGDMRKALNILQSTHMA 249
+ + + L L +GD R LN LQ +A
Sbjct: 419 IEDKAVDTLAYLSDGDARTGLNGLQLAVLA 448
>RGD|628836 [details] [associations]
symbol:Wrnip1 "Werner helicase interacting protein 1"
species:10116 "Rattus norvegicus" [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=ISO;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=ISO;ISS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030174 "regulation of DNA-dependent DNA
replication initiation" evidence=ISO;ISS] [GO:0042802 "identical
protein binding" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR006642
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 SMART:SM00734 RGD:628836
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0016887
GO:GO:0000731 GO:GO:0030174 eggNOG:COG2256 HOGENOM:HOG000017623
KO:K07478 InterPro:IPR021886 Pfam:PF12002 CTD:56897
HOVERGEN:HBG062192 OMA:PGHWDAD OrthoDB:EOG457568
GeneTree:ENSGT00390000008538 EMBL:AY136827 EMBL:BC098652
IPI:IPI00191457 RefSeq:NP_758835.1 UniGene:Rn.8783
ProteinModelPortal:Q8CG07 STRING:Q8CG07 PhosphoSite:Q8CG07
PRIDE:Q8CG07 Ensembl:ENSRNOT00000023332 GeneID:282835
KEGG:rno:282835 UCSC:RGD:628836 InParanoid:Q8CG07 NextBio:624901
ArrayExpress:Q8CG07 Genevestigator:Q8CG07
GermOnline:ENSRNOG00000017040 Uniprot:Q8CG07
Length = 660
Score = 123 (48.4 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 51/189 (26%), Positives = 84/189 (44%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIV--DTIDR-LTSENRLPHLLLYGPPGTGKTSTILAV 94
++ P +K RP +L D V +T+ R L N +P L+L+GPPG GKT+ +
Sbjct: 217 LEGKPLADKMRPDTLQDYIGQSRAVGQETLLRSLLETNEIPSLILWGPPGCGKTTLAHII 276
Query: 95 ARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAM 153
A ++ H++ + L+A++ + DV R I+ + +SF F K ++ +DE
Sbjct: 277 ANN---SKKHSIRFVTLSATNAKTNDV-RDVIKQAQNEKSF-FKRKT---ILFIDEIHRF 328
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
K Q +E T A N ++ AL SRC L + L I
Sbjct: 329 NKSQQDTFLPHVECGTITLIGATTENPSFQVNTALLSRCRVIVLEKLPVEAMVTILMRAI 388
Query: 214 EAEGLDVTE 222
+ G+ V +
Sbjct: 389 NSLGIHVLD 397
Score = 38 (18.4 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 220 VTEGGLAALVRLCNGDMRKALNILQSTHMA 249
+ + + L L +GD R LN LQ +A
Sbjct: 419 IEDKAVDTLAYLSDGDARTGLNGLQLAVLA 448
>UNIPROTKB|Q8CG07 [details] [associations]
symbol:Wrnip1 "ATPase WRNIP1" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR006642 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
SMART:SM00734 RGD:628836 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0016887 GO:GO:0000731 GO:GO:0030174 eggNOG:COG2256
HOGENOM:HOG000017623 KO:K07478 InterPro:IPR021886 Pfam:PF12002
CTD:56897 HOVERGEN:HBG062192 OMA:PGHWDAD OrthoDB:EOG457568
GeneTree:ENSGT00390000008538 EMBL:AY136827 EMBL:BC098652
IPI:IPI00191457 RefSeq:NP_758835.1 UniGene:Rn.8783
ProteinModelPortal:Q8CG07 STRING:Q8CG07 PhosphoSite:Q8CG07
PRIDE:Q8CG07 Ensembl:ENSRNOT00000023332 GeneID:282835
KEGG:rno:282835 UCSC:RGD:628836 InParanoid:Q8CG07 NextBio:624901
ArrayExpress:Q8CG07 Genevestigator:Q8CG07
GermOnline:ENSRNOG00000017040 Uniprot:Q8CG07
Length = 660
Score = 123 (48.4 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 51/189 (26%), Positives = 84/189 (44%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIV--DTIDR-LTSENRLPHLLLYGPPGTGKTSTILAV 94
++ P +K RP +L D V +T+ R L N +P L+L+GPPG GKT+ +
Sbjct: 217 LEGKPLADKMRPDTLQDYIGQSRAVGQETLLRSLLETNEIPSLILWGPPGCGKTTLAHII 276
Query: 95 ARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAM 153
A ++ H++ + L+A++ + DV R I+ + +SF F K ++ +DE
Sbjct: 277 ANN---SKKHSIRFVTLSATNAKTNDV-RDVIKQAQNEKSF-FKRKT---ILFIDEIHRF 328
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
K Q +E T A N ++ AL SRC L + L I
Sbjct: 329 NKSQQDTFLPHVECGTITLIGATTENPSFQVNTALLSRCRVIVLEKLPVEAMVTILMRAI 388
Query: 214 EAEGLDVTE 222
+ G+ V +
Sbjct: 389 NSLGIHVLD 397
Score = 38 (18.4 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 220 VTEGGLAALVRLCNGDMRKALNILQSTHMA 249
+ + + L L +GD R LN LQ +A
Sbjct: 419 IEDKAVDTLAYLSDGDARTGLNGLQLAVLA 448
>MGI|MGI:1333807 [details] [associations]
symbol:Rad17 "RAD17 homolog (S. pombe)" species:10090 "Mus
musculus" [GO:0000077 "DNA damage checkpoint" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=ISO;IMP] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0007093 "mitotic cell cycle checkpoint"
evidence=ISO] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0008156 "negative regulation of DNA replication"
evidence=ISO] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0042325 "regulation of phosphorylation"
evidence=ISO] InterPro:IPR003593 InterPro:IPR004582
InterPro:IPR018324 SMART:SM00382 MGI:MGI:1333807 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0000077 GO:GO:0042325
GO:GO:0006281 GO:GO:0006974 GO:GO:0017111 GO:GO:0007093
eggNOG:COG0470 GO:GO:0000781 GO:GO:0008156 KO:K06662
PANTHER:PTHR12172 CTD:5884 HOVERGEN:HBG059834 OMA:NYIDFFM
OrthoDB:EOG4229J6 TIGRFAMs:TIGR00602 EMBL:AF085737 EMBL:AJ011923
EMBL:BC066855 IPI:IPI00136368 RefSeq:NP_001037836.1
RefSeq:NP_035363.2 UniGene:Mm.248489 ProteinModelPortal:Q6NXW6
SMR:Q6NXW6 DIP:DIP-59315N STRING:Q6NXW6 PhosphoSite:Q6NXW6
PRIDE:Q6NXW6 Ensembl:ENSMUST00000022136 Ensembl:ENSMUST00000177848
GeneID:19356 KEGG:mmu:19356 GeneTree:ENSGT00440000039046
HOGENOM:HOG000013176 InParanoid:Q6NXW6 NextBio:296399 Bgee:Q6NXW6
CleanEx:MM_RAD17 Genevestigator:Q6NXW6
GermOnline:ENSMUSG00000021635 Uniprot:Q6NXW6
Length = 688
Score = 105 (42.0 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 24/74 (32%), Positives = 42/74 (56%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRL---PH-----LLLYGPPGTGKTSTILA 93
PWV+KY+P++ ++A H+ ++ ++ L P LL+ GPPG GKT+TI
Sbjct: 89 PWVDKYKPETQHELAVHKKKIEEVETWLKAQVLEVKPKQGGSVLLITGPPGCGKTTTIKI 148
Query: 94 VARKLYGAQYHNMI 107
++++L G Q +
Sbjct: 149 LSKEL-GIQVQEWV 161
Score = 58 (25.5 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 23/76 (30%), Positives = 36/76 (47%)
Query: 179 NQVNKIIPA-LQSRCT--RFRFAPLEPVHVTERLKHV--IEA----EGLDV-TEGGLAAL 228
N + P +Q C+ F P+ P + + L + IEA E + V + L L
Sbjct: 265 NNQRLLFPRNIQEECSVSNISFNPVAPTIMMKFLNRIVTIEASKNGEKIIVPNKTSLELL 324
Query: 229 VRLCNGDMRKALNILQ 244
+ C+GD+R A+N LQ
Sbjct: 325 CQGCSGDIRSAINSLQ 340
>ZFIN|ZDB-GENE-040718-409 [details] [associations]
symbol:rad17 "RAD17 homolog (S. pombe)"
species:7955 "Danio rerio" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR003593
InterPro:IPR004582 InterPro:IPR018324 SMART:SM00382
ZFIN:ZDB-GENE-040718-409 GO:GO:0005524 GO:GO:0005634 GO:GO:0006281
GO:GO:0007049 GO:GO:0017111 eggNOG:COG0470 PANTHER:PTHR12172
HOVERGEN:HBG059834 OMA:NYIDFFM OrthoDB:EOG4229J6 TIGRFAMs:TIGR00602
GeneTree:ENSGT00440000039046 HOGENOM:HOG000013176 EMBL:BX510923
IPI:IPI00482750 UniGene:Dr.31220 Ensembl:ENSDART00000132950
InParanoid:A2BGQ6 Uniprot:A2BGQ6
Length = 666
Score = 107 (42.7 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 24 DNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTID---RL---TSENRLPHL 77
DN V PD + PWV+ + PQS A++A H+ V+ ++ R+ S+ L
Sbjct: 62 DNQITVSSEANNPD-QDEPWVDIHAPQSQAELAVHKKKVEEVESWLRVHLDKSKKGGAIL 120
Query: 78 LLYGPPGTGKTSTILAVARKL 98
LL GP G GKT+T+ +A++L
Sbjct: 121 LLTGPSGCGKTATVQVLAKEL 141
Score = 55 (24.4 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 197 FAPLEPVHVTERLKHVIEAEGLD----VTEGGLAALVRLCNG---DMRKALNILQ 244
F P+ P + + L ++ E + ++ AAL LC+G D+R A+N LQ
Sbjct: 275 FNPVAPTSMMKVLSRIVTIEAVKSSGRISVPDKAALDLLCSGSSGDIRSAINSLQ 329
>UNIPROTKB|F1PVV3 [details] [associations]
symbol:WRNIP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 InterPro:IPR021886 Pfam:PF12002
OMA:PGHWDAD GeneTree:ENSGT00390000008538 EMBL:AAEX03017467
Ensembl:ENSCAFT00000014690 Uniprot:F1PVV3
Length = 468
Score = 118 (46.6 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 51/189 (26%), Positives = 82/189 (43%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIV--DTIDR-LTSENRLPHLLLYGPPGTGKTSTILAV 94
++ P K RP +L D V DT+ R L +P L+L+GPPG GKT+ +
Sbjct: 25 LEGKPLATKMRPDTLQDYIGQSRAVGQDTLLRSLLETTEIPSLILWGPPGCGKTTLAHII 84
Query: 95 ARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAM 153
A ++ H++ + L+A++ + DV R I+ + +SF F K ++ +DE
Sbjct: 85 ANN---SKKHSIRFVTLSATNAKTNDV-RDVIKQAQNEKSF-FKRKT---ILFIDEIHRF 136
Query: 154 TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI 213
K Q +E T A N ++ AL SRC L + L I
Sbjct: 137 NKSQQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAI 196
Query: 214 EAEGLDVTE 222
+ G+ V +
Sbjct: 197 NSLGIHVLD 205
Score = 38 (18.4 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 220 VTEGGLAALVRLCNGDMRKALNILQSTHMA 249
+ + + L L +GD R LN LQ +A
Sbjct: 227 IEDKAVDTLAYLSDGDARAGLNGLQLAVLA 256
>TIGR_CMR|CJE_0191 [details] [associations]
symbol:CJE_0191 "ATPase, AAA family protein"
species:195099 "Campylobacter jejuni RM1221" [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0019538 "protein metabolic process"
evidence=ISS] InterPro:IPR003593 InterPro:IPR008824 Pfam:PF05496
SMART:SM00382 GO:GO:0000166 GO:GO:0006281 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0006310 GO:GO:0009378
eggNOG:COG2256 KO:K07478 ProtClustDB:PRK13342 InterPro:IPR021886
Pfam:PF12002 HOGENOM:HOG000017624 RefSeq:YP_178215.1
ProteinModelPortal:Q5HWX0 STRING:Q5HWX0 GeneID:3230954
KEGG:cjr:CJE0191 PATRIC:20042091 OMA:RLLVIAY
BioCyc:CJEJ195099:GJC0-196-MONOMER Uniprot:Q5HWX0
Length = 393
Score = 113 (44.8 bits), Expect = 0.00087, P = 0.00087
Identities = 43/198 (21%), Positives = 88/198 (44%)
Query: 47 YRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNM 106
+RP++ D+ ++++ + T+ +LPH + +G G+GKT T V K +G ++
Sbjct: 7 FRPENFDDILGQYELIEIFKKFTALQKLPHSIFFGTAGSGKT-TFARVVAKEFGLDFY-- 63
Query: 107 ILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIE 166
E + + + ++ +R+ + ++ ++ K L+ +DE ++K Q L +E
Sbjct: 64 --EFDGGNFK-LEELRKILDNYKNSL-----YKP---LIFIDEIHRLSKTQQEMLLIPME 112
Query: 167 KYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLA 226
Y A N + ++SR F F L + L V E + +
Sbjct: 113 NYRLILIGASTENPYFVLSSGIRSRSMLFEFKSLGVKELETLLLRVQEKMKFSIDKEAKD 172
Query: 227 ALVRLCNGDMRKALNILQ 244
L++ + D R LN+L+
Sbjct: 173 FLLK--SADARAMLNLLE 188
>WB|WBGene00004337 [details] [associations]
symbol:rfc-1 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003689 "DNA clamp loader activity" evidence=IEA] [GO:0005663
"DNA replication factor C complex" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
InterPro:IPR012178 InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 GO:GO:0005524 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0006260 GO:GO:0000003 GO:GO:0006974 eggNOG:COG0470
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 KO:K10754 EMBL:Z75532 PIR:T20230
RefSeq:NP_001256606.1 ProteinModelPortal:Q18841 SMR:Q18841
IntAct:Q18841 MINT:MINT-228102 STRING:Q18841 PaxDb:Q18841
EnsemblMetazoa:C54G10.2a GeneID:179967 KEGG:cel:CELE_C54G10.2
UCSC:C54G10.2 CTD:179967 WormBase:C54G10.2a HOGENOM:HOG000017534
InParanoid:Q18841 OMA:DYAPMLR NextBio:907580 Uniprot:Q18841
Length = 839
Score = 117 (46.2 bits), Expect = 0.00090, P = 0.00090
Identities = 54/240 (22%), Positives = 103/240 (42%)
Query: 21 KPKDNGKNVIVSGTPPDI-KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSEN--RLPHL 77
KPK G+ V +G I K W++ + +L + A + ++S++
Sbjct: 285 KPKRMGELVGQNGDKSPINKLLEWIKDWAKHNLGEGAKIKK-PKPAPWMSSQDGTSFKAA 343
Query: 78 LLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFS-- 135
LL G PG GKT+ ++L G Q ++E+NASD R + +I + + +
Sbjct: 344 LLSGSPGVGKTTCAYMACQQL-GLQ----LVEMNASDVRSKKHLEAKIGELSGSHQIEQF 398
Query: 136 FGVKASVK--------LVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC---NQVNKI 184
FG K ++++DE D M+ + A + + K ++ +IC ++ +
Sbjct: 399 FGAKKCAPQDNQKVHHILIMDEVDGMSGNEDRAGISELIQIIKESKIPIICICNDRQHPK 458
Query: 185 IPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQ 244
I L + C RF + R+ + E + + + L ++ L D+R+ + LQ
Sbjct: 459 IRTLANYCYDLRFPKPRVETIRSRMMTICSQEKMKIGKEELDEIIELSGHDVRQTIYNLQ 518
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.133 0.379 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 309 309 0.00079 116 3 11 22 0.39 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 181
No. of states in DFA: 593 (63 KB)
Total size of DFA: 192 KB (2110 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 26.06u 0.13s 26.19t Elapsed: 00:00:02
Total cpu time: 26.09u 0.13s 26.22t Elapsed: 00:00:02
Start: Fri May 10 05:50:12 2013 End: Fri May 10 05:50:14 2013
WARNINGS ISSUED: 1