Query 021660
Match_columns 309
No_of_seqs 194 out of 2430
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 04:42:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021660.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021660hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0989 Replication factor C, 100.0 3.8E-43 8.1E-48 282.6 24.4 269 39-308 22-296 (346)
2 PLN03025 replication factor C 100.0 9.1E-42 2E-46 292.9 29.7 265 41-308 1-265 (319)
3 KOG0991 Replication factor C, 100.0 2.3E-41 5E-46 261.9 22.1 268 39-309 13-280 (333)
4 PRK14956 DNA polymerase III su 100.0 4.8E-40 1E-44 287.1 28.6 264 39-308 4-289 (484)
5 PRK14958 DNA polymerase III su 100.0 4.1E-39 8.9E-44 288.9 29.2 262 40-307 3-285 (509)
6 PRK06645 DNA polymerase III su 100.0 1.1E-38 2.4E-43 284.1 31.0 265 38-308 6-298 (507)
7 PRK07003 DNA polymerase III su 100.0 8.8E-39 1.9E-43 288.8 30.1 262 40-307 3-285 (830)
8 PRK14964 DNA polymerase III su 100.0 1.1E-38 2.4E-43 281.7 30.0 259 42-307 2-281 (491)
9 PRK14962 DNA polymerase III su 100.0 2.5E-38 5.5E-43 281.0 30.7 262 41-308 2-284 (472)
10 PRK14951 DNA polymerase III su 100.0 4E-38 8.7E-43 285.4 29.8 263 40-308 3-291 (618)
11 PRK14952 DNA polymerase III su 100.0 7.5E-38 1.6E-42 282.8 30.8 261 42-308 2-286 (584)
12 PRK12323 DNA polymerase III su 100.0 3.9E-38 8.4E-43 281.4 27.9 262 40-307 3-290 (700)
13 PRK14960 DNA polymerase III su 100.0 7.1E-38 1.5E-42 280.3 29.4 261 41-307 3-284 (702)
14 PRK14961 DNA polymerase III su 100.0 1.5E-37 3.2E-42 270.7 30.0 263 40-308 3-286 (363)
15 PRK14963 DNA polymerase III su 100.0 1.7E-37 3.7E-42 277.8 31.0 260 43-308 4-282 (504)
16 PRK05896 DNA polymerase III su 100.0 1.3E-37 2.9E-42 278.6 29.4 263 40-308 3-286 (605)
17 PRK14949 DNA polymerase III su 100.0 1.5E-37 3.2E-42 285.9 30.1 263 40-308 3-286 (944)
18 PRK09111 DNA polymerase III su 100.0 2.5E-37 5.3E-42 280.9 31.1 268 35-308 6-299 (598)
19 PRK08691 DNA polymerase III su 100.0 1.6E-37 3.4E-42 280.6 29.3 263 40-308 3-286 (709)
20 PRK00440 rfc replication facto 100.0 9.1E-37 2E-41 263.7 32.0 266 39-307 3-268 (319)
21 PRK08451 DNA polymerase III su 100.0 7.4E-37 1.6E-41 272.4 31.7 260 41-308 2-282 (535)
22 PRK14953 DNA polymerase III su 100.0 8.8E-37 1.9E-41 272.4 30.2 263 40-308 3-286 (486)
23 PRK14965 DNA polymerase III su 100.0 4.3E-37 9.4E-42 280.7 28.7 262 41-308 4-286 (576)
24 PRK07764 DNA polymerase III su 100.0 7.5E-37 1.6E-41 286.0 30.2 261 42-308 4-288 (824)
25 PRK06305 DNA polymerase III su 100.0 1.4E-36 3E-41 269.8 29.5 263 40-308 4-288 (451)
26 PRK14957 DNA polymerase III su 100.0 2E-36 4.4E-41 271.1 30.7 263 40-308 3-286 (546)
27 PRK07994 DNA polymerase III su 100.0 1.7E-36 3.7E-41 275.3 29.9 262 40-307 3-285 (647)
28 PRK07133 DNA polymerase III su 100.0 2.2E-36 4.8E-41 275.8 30.3 263 40-308 5-285 (725)
29 PRK05563 DNA polymerase III su 100.0 2.5E-36 5.4E-41 274.5 30.5 262 41-308 4-286 (559)
30 PRK14955 DNA polymerase III su 100.0 1.3E-36 2.8E-41 267.6 27.5 263 40-308 3-299 (397)
31 PRK14959 DNA polymerase III su 100.0 3.3E-36 7E-41 271.0 28.9 264 39-308 2-286 (624)
32 COG2812 DnaX DNA polymerase II 100.0 4.2E-37 9.2E-42 270.6 22.5 262 41-308 4-286 (515)
33 PRK14954 DNA polymerase III su 100.0 5.7E-36 1.2E-40 272.3 30.0 262 41-308 4-299 (620)
34 PRK06647 DNA polymerase III su 100.0 5.2E-36 1.1E-40 271.3 29.5 262 41-308 4-286 (563)
35 PRK14971 DNA polymerase III su 100.0 6.2E-36 1.3E-40 273.7 29.9 263 40-308 4-288 (614)
36 COG2256 MGS1 ATPase related to 100.0 3.7E-36 8.1E-41 251.0 25.1 254 41-308 12-290 (436)
37 PRK14969 DNA polymerase III su 100.0 7.5E-36 1.6E-40 269.6 28.6 262 40-307 3-285 (527)
38 TIGR02397 dnaX_nterm DNA polym 100.0 1.8E-35 4E-40 259.1 30.2 262 41-308 2-284 (355)
39 PRK14970 DNA polymerase III su 100.0 4E-35 8.7E-40 257.2 30.3 264 39-308 3-275 (367)
40 PRK12402 replication factor C 100.0 7E-35 1.5E-39 253.8 31.6 264 41-308 3-293 (337)
41 PRK14950 DNA polymerase III su 100.0 7.8E-35 1.7E-39 267.3 30.2 262 41-308 4-287 (585)
42 PRK14948 DNA polymerase III su 100.0 1.2E-34 2.6E-39 265.1 30.9 263 40-308 3-287 (620)
43 PRK13342 recombination factor 100.0 5.3E-32 1.1E-36 240.0 27.7 253 42-308 1-271 (413)
44 PRK04195 replication factor C 100.0 3.3E-31 7.2E-36 239.2 27.9 253 41-307 2-264 (482)
45 PRK13341 recombination factor 100.0 6.4E-31 1.4E-35 243.6 27.5 257 39-308 14-299 (725)
46 PHA02544 44 clamp loader, smal 100.0 3.8E-29 8.2E-34 215.6 29.2 252 37-307 5-265 (316)
47 KOG2028 ATPase related to the 100.0 2.3E-30 5E-35 213.2 20.1 261 39-309 124-421 (554)
48 KOG2035 Replication factor C, 100.0 3.9E-29 8.5E-34 198.7 24.2 265 42-308 2-296 (351)
49 PF05496 RuvB_N: Holliday junc 100.0 3.1E-30 6.8E-35 202.4 17.7 197 37-249 8-228 (233)
50 KOG0990 Replication factor C, 100.0 9.6E-30 2.1E-34 206.4 16.7 275 34-308 22-303 (360)
51 PRK04132 replication factor C 100.0 1.3E-27 2.8E-32 222.6 27.1 229 77-308 567-797 (846)
52 PRK00080 ruvB Holliday junctio 99.9 3.1E-25 6.8E-30 191.5 25.2 207 41-263 13-248 (328)
53 PRK09112 DNA polymerase III su 99.9 4.8E-25 1E-29 189.6 26.0 237 46-293 16-289 (351)
54 PRK05564 DNA polymerase III su 99.9 1E-24 2.2E-29 187.1 24.9 232 51-307 2-239 (313)
55 COG2255 RuvB Holliday junction 99.9 5.2E-25 1.1E-29 176.3 19.5 204 44-263 17-249 (332)
56 PRK07471 DNA polymerase III su 99.9 2.6E-24 5.7E-29 186.0 25.0 234 47-293 13-292 (365)
57 TIGR00635 ruvB Holliday juncti 99.9 5.4E-24 1.2E-28 182.6 23.7 198 50-263 1-227 (305)
58 KOG1969 DNA replication checkp 99.9 8.5E-24 1.8E-28 188.3 23.2 208 40-253 258-521 (877)
59 PRK07940 DNA polymerase III su 99.9 9.3E-24 2E-28 184.0 20.1 183 51-243 3-214 (394)
60 TIGR02902 spore_lonB ATP-depen 99.9 2.4E-23 5.2E-28 189.1 21.1 227 39-266 51-333 (531)
61 PRK07399 DNA polymerase III su 99.9 7.1E-23 1.5E-27 173.9 22.4 187 51-246 2-225 (314)
62 PRK07993 DNA polymerase III su 99.9 2.6E-22 5.7E-27 171.7 22.6 177 58-244 7-206 (334)
63 PRK05707 DNA polymerase III su 99.9 1.1E-21 2.3E-26 167.6 23.4 170 66-244 13-205 (328)
64 TIGR00678 holB DNA polymerase 99.9 3.2E-22 6.9E-27 159.3 17.5 166 63-239 2-188 (188)
65 PRK08084 DNA replication initi 99.9 9.1E-22 2E-26 161.5 20.2 198 51-263 20-234 (235)
66 PRK08058 DNA polymerase III su 99.9 9.9E-22 2.2E-26 168.9 21.1 181 52-244 4-206 (329)
67 PRK06871 DNA polymerase III su 99.9 4.7E-21 1E-25 162.3 24.1 177 58-244 7-205 (325)
68 PRK06090 DNA polymerase III su 99.9 4.6E-21 9.9E-26 162.0 22.7 174 58-244 8-203 (319)
69 COG0470 HolB ATPase involved i 99.9 1.4E-21 3E-26 169.5 19.6 184 54-249 2-206 (325)
70 PRK06893 DNA replication initi 99.9 4.9E-21 1.1E-25 156.7 19.3 201 48-263 11-228 (229)
71 PRK08769 DNA polymerase III su 99.9 1.3E-20 2.9E-25 159.3 22.4 176 58-244 9-210 (319)
72 PRK08727 hypothetical protein; 99.9 1.8E-20 4E-25 153.6 21.2 199 51-264 17-230 (233)
73 PRK06964 DNA polymerase III su 99.9 7.7E-20 1.7E-24 156.0 24.4 216 59-293 7-272 (342)
74 PRK08903 DnaA regulatory inact 99.9 1.7E-20 3.7E-25 154.0 19.4 199 48-265 13-226 (227)
75 TIGR00602 rad24 checkpoint pro 99.9 7.5E-21 1.6E-25 173.5 18.9 212 38-249 69-330 (637)
76 COG1223 Predicted ATPase (AAA+ 99.9 1.3E-20 2.9E-25 149.2 16.5 179 46-235 114-318 (368)
77 TIGR02881 spore_V_K stage V sp 99.9 6.2E-20 1.3E-24 153.5 19.1 189 52-248 5-236 (261)
78 TIGR03420 DnaA_homol_Hda DnaA 99.9 7.1E-20 1.5E-24 150.4 18.2 199 49-262 11-225 (226)
79 TIGR02928 orc1/cdc6 family rep 99.9 2.9E-19 6.3E-24 157.3 22.9 222 41-265 6-274 (365)
80 PTZ00112 origin recognition co 99.8 3.6E-19 7.9E-24 163.3 22.6 215 53-267 755-1008(1164)
81 PF13177 DNA_pol3_delta2: DNA 99.8 1E-19 2.2E-24 140.5 16.0 140 57-201 1-162 (162)
82 PRK00411 cdc6 cell division co 99.8 1.3E-18 2.9E-23 154.6 25.4 255 43-300 23-336 (394)
83 PF03215 Rad17: Rad17 cell cyc 99.8 3.6E-19 7.7E-24 159.9 20.4 207 38-249 4-270 (519)
84 PRK05642 DNA replication initi 99.8 8E-19 1.7E-23 143.9 20.0 198 51-263 17-233 (234)
85 COG1222 RPT1 ATP-dependent 26S 99.8 8.5E-19 1.8E-23 145.2 18.6 198 51-263 149-390 (406)
86 PRK09087 hypothetical protein; 99.8 9E-19 2E-23 142.4 17.5 188 51-264 19-221 (226)
87 PRK06620 hypothetical protein; 99.8 1.5E-18 3.3E-23 139.9 18.7 175 58-262 24-213 (214)
88 TIGR02903 spore_lon_C ATP-depe 99.8 2.4E-18 5.1E-23 158.9 22.1 226 40-266 141-431 (615)
89 CHL00181 cbbX CbbX; Provisiona 99.8 2E-18 4.3E-23 145.2 18.2 188 53-248 23-252 (287)
90 PRK14087 dnaA chromosomal repl 99.8 9E-18 2E-22 149.7 22.9 207 49-264 111-347 (450)
91 PRK05629 hypothetical protein; 99.8 1.8E-17 4E-22 142.5 23.5 223 75-308 7-234 (318)
92 KOG1970 Checkpoint RAD17-RFC c 99.8 1.5E-17 3.3E-22 144.6 22.3 209 36-249 65-322 (634)
93 TIGR02880 cbbX_cfxQ probable R 99.8 4.2E-18 9.1E-23 143.4 18.4 187 54-248 23-251 (284)
94 PRK12422 chromosomal replicati 99.8 5.5E-18 1.2E-22 150.6 19.9 202 51-263 109-341 (445)
95 PRK05907 hypothetical protein; 99.8 7.2E-17 1.6E-21 136.7 25.1 229 62-309 7-247 (311)
96 PRK00149 dnaA chromosomal repl 99.8 8E-18 1.7E-22 151.3 20.5 205 51-264 120-348 (450)
97 TIGR00362 DnaA chromosomal rep 99.8 1.5E-17 3.3E-22 147.8 22.0 204 51-263 108-335 (405)
98 TIGR02639 ClpA ATP-dependent C 99.8 4.8E-18 1E-22 160.8 19.4 215 41-262 170-426 (731)
99 TIGR01241 FtsH_fam ATP-depende 99.8 8.1E-18 1.8E-22 153.0 19.9 204 45-263 47-293 (495)
100 CHL00195 ycf46 Ycf46; Provisio 99.8 2.4E-17 5.2E-22 147.3 22.3 200 50-263 225-461 (489)
101 PRK07452 DNA polymerase III su 99.8 3.2E-17 6.9E-22 141.9 22.5 224 75-308 2-240 (326)
102 KOG0730 AAA+-type ATPase [Post 99.8 1.1E-17 2.3E-22 148.6 19.4 224 47-293 428-690 (693)
103 PRK05917 DNA polymerase III su 99.8 1.4E-17 3.1E-22 138.0 19.1 158 60-237 4-176 (290)
104 COG1474 CDC6 Cdc6-related prot 99.8 1.7E-17 3.7E-22 143.5 20.3 222 43-267 10-267 (366)
105 PF00308 Bac_DnaA: Bacterial d 99.8 8.3E-18 1.8E-22 136.3 16.9 190 51-249 6-215 (219)
106 PRK14086 dnaA chromosomal repl 99.8 2.2E-17 4.8E-22 149.1 20.7 206 51-263 286-513 (617)
107 PRK14088 dnaA chromosomal repl 99.8 1.2E-17 2.7E-22 148.7 18.9 205 51-263 103-330 (440)
108 COG0593 DnaA ATPase involved i 99.8 4.5E-17 9.7E-22 140.4 21.6 207 51-265 85-313 (408)
109 KOG0733 Nuclear AAA ATPase (VC 99.8 1.1E-17 2.4E-22 146.9 17.8 179 51-244 188-404 (802)
110 PRK07914 hypothetical protein; 99.8 1.3E-16 2.9E-21 137.2 24.3 223 75-308 6-236 (320)
111 PRK03992 proteasome-activating 99.8 3.1E-17 6.7E-22 144.3 20.2 203 50-263 128-370 (389)
112 TIGR03345 VI_ClpV1 type VI sec 99.8 7E-18 1.5E-22 160.8 17.1 201 42-248 176-408 (852)
113 PRK08487 DNA polymerase III su 99.8 2.4E-16 5.2E-21 136.0 24.5 231 64-309 5-241 (328)
114 PRK07132 DNA polymerase III su 99.8 7.1E-17 1.5E-21 135.7 20.4 174 60-244 3-186 (299)
115 PTZ00361 26 proteosome regulat 99.8 3E-17 6.6E-22 144.5 18.7 207 43-264 173-423 (438)
116 PRK08699 DNA polymerase III su 99.8 2.4E-16 5.1E-21 134.7 23.4 165 59-238 7-202 (325)
117 PRK07276 DNA polymerase III su 99.8 1.4E-16 2.9E-21 132.8 21.3 172 57-243 6-198 (290)
118 CHL00176 ftsH cell division pr 99.8 5.4E-17 1.2E-21 149.5 20.7 199 50-263 180-421 (638)
119 PRK06585 holA DNA polymerase I 99.8 4.8E-16 1E-20 135.5 25.0 234 65-309 9-253 (343)
120 PTZ00454 26S protease regulato 99.8 1.3E-16 2.7E-21 139.8 21.0 200 49-263 141-384 (398)
121 KOG0738 AAA+-type ATPase [Post 99.7 7.5E-17 1.6E-21 134.8 16.3 233 51-297 210-489 (491)
122 PRK05818 DNA polymerase III su 99.7 6.6E-16 1.4E-20 125.4 20.6 188 77-277 10-226 (261)
123 COG1224 TIP49 DNA helicase TIP 99.7 4E-16 8.7E-21 129.2 17.7 121 142-263 292-430 (450)
124 TIGR01128 holA DNA polymerase 99.7 2.6E-15 5.7E-20 128.8 22.7 208 91-308 4-220 (302)
125 PRK05574 holA DNA polymerase I 99.7 7.3E-15 1.6E-19 128.2 25.7 234 64-308 7-255 (340)
126 PF06068 TIP49: TIP49 C-termin 99.7 3.3E-16 7.1E-21 131.6 16.2 105 142-247 279-396 (398)
127 TIGR01242 26Sp45 26S proteasom 99.7 1E-15 2.2E-20 134.2 19.5 205 48-263 117-361 (364)
128 TIGR02640 gas_vesic_GvpN gas v 99.7 3.2E-15 7E-20 124.8 20.9 193 59-263 8-255 (262)
129 TIGR00763 lon ATP-dependent pr 99.7 2.7E-16 5.8E-21 149.8 15.7 183 53-246 320-550 (775)
130 TIGR03689 pup_AAA proteasome A 99.7 1.4E-15 3E-20 136.0 18.4 171 44-220 173-384 (512)
131 KOG0743 AAA+-type ATPase [Post 99.7 2.1E-15 4.6E-20 129.2 18.2 198 48-280 196-434 (457)
132 TIGR01243 CDC48 AAA family ATP 99.7 4.5E-15 9.7E-20 141.2 22.5 184 49-248 449-670 (733)
133 KOG0731 AAA+-type ATPase conta 99.7 2.1E-15 4.6E-20 137.9 18.3 201 49-263 307-551 (774)
134 PLN00020 ribulose bisphosphate 99.7 7.7E-16 1.7E-20 129.8 14.2 147 77-235 151-331 (413)
135 TIGR03346 chaperone_ClpB ATP-d 99.7 8E-16 1.7E-20 147.8 16.2 201 42-248 162-394 (852)
136 KOG0734 AAA+-type ATPase conta 99.7 1.4E-15 3E-20 132.0 15.8 195 49-259 300-535 (752)
137 PRK10865 protein disaggregatio 99.7 9.4E-16 2E-20 146.8 15.4 203 41-249 166-400 (857)
138 TIGR03015 pepcterm_ATPase puta 99.7 2.3E-14 5E-19 120.9 21.4 202 59-264 29-265 (269)
139 PRK11034 clpA ATP-dependent Cl 99.7 7.1E-15 1.5E-19 137.9 19.4 209 47-262 180-430 (758)
140 KOG0733 Nuclear AAA ATPase (VC 99.7 1.1E-14 2.3E-19 128.4 18.7 172 51-232 509-712 (802)
141 COG0466 Lon ATP-dependent Lon 99.7 3.6E-15 7.8E-20 134.0 15.3 209 52-265 322-584 (782)
142 CHL00095 clpC Clp protease ATP 99.6 7.4E-15 1.6E-19 140.8 17.8 196 46-248 172-399 (821)
143 COG1466 HolA DNA polymerase II 99.6 1.4E-13 2.9E-18 119.1 23.3 233 67-309 8-250 (334)
144 KOG0739 AAA+-type ATPase [Post 99.6 3.7E-15 8E-20 120.8 12.3 175 51-235 131-334 (439)
145 PRK13407 bchI magnesium chelat 99.6 2E-14 4.2E-19 122.8 17.2 218 48-265 3-306 (334)
146 PF05673 DUF815: Protein of un 99.6 4.9E-14 1.1E-18 112.9 17.9 191 44-247 18-246 (249)
147 PRK10787 DNA-binding ATP-depen 99.6 1.3E-14 2.8E-19 137.2 16.8 209 53-267 322-584 (784)
148 CHL00206 ycf2 Ycf2; Provisiona 99.6 2.1E-14 4.5E-19 141.2 17.7 180 76-265 1632-1877(2281)
149 PRK10733 hflB ATP-dependent me 99.6 3.4E-14 7.4E-19 132.5 18.3 201 47-262 146-389 (644)
150 KOG0737 AAA+-type ATPase [Post 99.6 5.2E-15 1.1E-19 123.5 11.2 188 51-247 90-307 (386)
151 KOG1942 DNA helicase, TBP-inte 99.6 4.4E-14 9.6E-19 114.3 16.1 121 142-263 297-436 (456)
152 KOG0727 26S proteasome regulat 99.6 5.8E-14 1.2E-18 111.4 16.3 159 47-219 148-345 (408)
153 PF00004 AAA: ATPase family as 99.6 1E-14 2.3E-19 109.2 11.8 113 77-198 1-131 (132)
154 PRK14700 recombination factor 99.6 3.3E-14 7.1E-19 117.0 15.4 136 172-308 9-167 (300)
155 KOG0736 Peroxisome assembly fa 99.6 3.9E-14 8.6E-19 127.9 17.0 175 45-234 664-877 (953)
156 KOG2004 Mitochondrial ATP-depe 99.6 2.9E-14 6.3E-19 127.9 15.5 186 52-248 410-643 (906)
157 TIGR01817 nifA Nif-specific re 99.6 4.9E-14 1.1E-18 129.7 17.7 209 48-259 191-439 (534)
158 COG0464 SpoVK ATPases of the A 99.6 8.6E-14 1.9E-18 127.1 18.2 206 49-264 238-482 (494)
159 KOG1968 Replication factor C, 99.6 1.7E-14 3.6E-19 135.7 13.6 203 40-249 307-538 (871)
160 PRK11034 clpA ATP-dependent Cl 99.6 5.2E-14 1.1E-18 132.1 16.9 175 53-232 458-694 (758)
161 PF01637 Arch_ATPase: Archaeal 99.6 8.4E-15 1.8E-19 120.8 9.8 184 55-241 1-233 (234)
162 TIGR03345 VI_ClpV1 type VI sec 99.6 1E-13 2.2E-18 132.5 18.4 185 53-247 566-827 (852)
163 TIGR02030 BchI-ChlI magnesium 99.6 2.5E-13 5.3E-18 116.3 18.6 214 52-265 3-309 (337)
164 TIGR01243 CDC48 AAA family ATP 99.6 1.3E-13 2.9E-18 131.2 18.5 178 49-242 174-387 (733)
165 CHL00081 chlI Mg-protoporyphyr 99.6 2.1E-13 4.5E-18 116.7 17.5 216 51-266 15-323 (350)
166 PRK06581 DNA polymerase III su 99.6 1.4E-12 3E-17 103.8 20.5 175 62-244 2-189 (263)
167 TIGR02974 phageshock_pspF psp 99.6 1.9E-13 4.1E-18 117.5 16.7 200 55-257 1-242 (329)
168 TIGR02639 ClpA ATP-dependent C 99.6 1.3E-13 2.8E-18 130.9 17.0 181 52-245 453-706 (731)
169 PRK13531 regulatory ATPase Rav 99.5 1.3E-12 2.8E-17 115.1 20.3 204 52-262 19-280 (498)
170 COG2204 AtoC Response regulato 99.5 2.6E-12 5.6E-17 112.8 21.1 206 51-259 139-385 (464)
171 TIGR03346 chaperone_ClpB ATP-d 99.5 5.8E-13 1.3E-17 128.2 18.7 186 52-247 564-822 (852)
172 TIGR01650 PD_CobS cobaltochela 99.5 2.6E-12 5.6E-17 108.3 20.0 179 47-232 39-252 (327)
173 KOG0740 AAA+-type ATPase [Post 99.5 1.8E-13 3.8E-18 118.3 13.3 238 46-293 146-420 (428)
174 PRK05342 clpX ATP-dependent pr 99.5 3.6E-13 7.7E-18 118.4 15.2 173 54-232 72-357 (412)
175 PRK10820 DNA-binding transcrip 99.5 7.9E-13 1.7E-17 120.7 17.5 207 49-258 200-447 (520)
176 PRK11388 DNA-binding transcrip 99.5 2.4E-12 5.1E-17 121.2 21.1 209 50-261 322-567 (638)
177 cd00009 AAA The AAA+ (ATPases 99.5 5.1E-13 1.1E-17 101.8 13.6 141 56-198 1-150 (151)
178 PRK11608 pspF phage shock prot 99.5 1.4E-12 2.9E-17 112.4 17.2 196 52-250 5-240 (326)
179 COG1221 PspF Transcriptional r 99.5 1.2E-12 2.6E-17 112.9 16.6 199 51-250 76-309 (403)
180 KOG0742 AAA+-type ATPase [Post 99.5 1.3E-12 2.8E-17 110.5 16.4 153 51-216 353-531 (630)
181 COG0542 clpA ATP-binding subun 99.5 5.4E-13 1.2E-17 123.2 15.2 188 52-245 490-749 (786)
182 COG0465 HflB ATP-dependent Zn 99.5 4.4E-13 9.6E-18 120.7 14.3 198 50-262 147-387 (596)
183 KOG0652 26S proteasome regulat 99.5 6.9E-13 1.5E-17 105.9 13.7 169 51-234 169-375 (424)
184 PRK10865 protein disaggregatio 99.5 2.2E-12 4.8E-17 123.9 19.9 191 51-247 566-825 (857)
185 KOG1514 Origin recognition com 99.5 3.3E-12 7.1E-17 114.8 19.4 195 55-250 398-628 (767)
186 TIGR02329 propionate_PrpR prop 99.5 2E-12 4.4E-17 117.2 17.9 208 50-260 209-465 (526)
187 CHL00095 clpC Clp protease ATP 99.5 1.2E-12 2.6E-17 125.8 17.3 184 52-245 508-776 (821)
188 KOG0728 26S proteasome regulat 99.5 2E-12 4.4E-17 102.6 15.3 175 49-238 142-355 (404)
189 KOG0735 AAA+-type ATPase [Post 99.5 1.8E-12 3.9E-17 116.5 16.5 182 51-243 665-877 (952)
190 PRK15424 propionate catabolism 99.5 2.4E-12 5.3E-17 116.6 17.5 209 50-259 216-479 (538)
191 KOG2680 DNA helicase TIP49, TB 99.5 6.4E-12 1.4E-16 102.3 17.8 122 141-263 288-427 (454)
192 KOG0726 26S proteasome regulat 99.5 3.3E-13 7.1E-18 109.3 10.1 153 45-211 177-367 (440)
193 KOG2227 Pre-initiation complex 99.5 1.1E-12 2.5E-17 112.7 13.3 197 51-247 148-376 (529)
194 PRK05022 anaerobic nitric oxid 99.5 1.9E-11 4.2E-16 111.7 22.0 197 51-250 185-420 (509)
195 KOG0730 AAA+-type ATPase [Post 99.4 7.8E-12 1.7E-16 111.8 17.9 197 53-264 184-415 (693)
196 PF05621 TniB: Bacterial TniB 99.4 3.1E-11 6.7E-16 100.0 19.8 207 55-261 36-285 (302)
197 COG2607 Predicted ATPase (AAA+ 99.4 2.9E-11 6.2E-16 95.6 18.6 192 44-248 51-279 (287)
198 TIGR02442 Cob-chelat-sub cobal 99.4 5.7E-12 1.2E-16 117.6 17.4 212 52-263 3-302 (633)
199 TIGR00382 clpX endopeptidase C 99.4 5.5E-12 1.2E-16 110.4 16.2 189 53-247 77-381 (413)
200 COG0542 clpA ATP-binding subun 99.4 3.8E-12 8.2E-17 117.7 13.9 197 45-248 162-391 (786)
201 COG3829 RocR Transcriptional r 99.4 1.9E-11 4E-16 107.6 17.5 209 48-259 240-491 (560)
202 COG3604 FhlA Transcriptional r 99.4 6.1E-11 1.3E-15 103.2 19.1 197 51-250 221-456 (550)
203 KOG0729 26S proteasome regulat 99.4 9.4E-12 2E-16 99.8 13.0 169 51-235 175-382 (435)
204 PRK15429 formate hydrogenlyase 99.4 1.8E-11 4E-16 115.9 17.0 197 51-250 374-609 (686)
205 COG0714 MoxR-like ATPases [Gen 99.4 2.5E-11 5.4E-16 105.1 15.7 143 53-204 24-193 (329)
206 KOG0651 26S proteasome regulat 99.4 3.2E-11 6.9E-16 98.7 14.7 170 51-234 130-339 (388)
207 PRK11331 5-methylcytosine-spec 99.4 1.8E-11 4E-16 107.1 14.2 150 52-210 174-369 (459)
208 KOG0482 DNA replication licens 99.4 9.9E-11 2.1E-15 101.6 17.9 255 43-307 332-700 (721)
209 KOG0744 AAA+-type ATPase [Post 99.3 3.7E-11 8.1E-16 98.8 14.1 160 52-215 141-342 (423)
210 PHA02244 ATPase-like protein 99.3 4.4E-11 9.5E-16 102.0 15.0 129 64-202 111-263 (383)
211 TIGR00390 hslU ATP-dependent p 99.3 2.5E-11 5.3E-16 105.1 13.7 108 141-248 247-402 (441)
212 TIGR02915 PEP_resp_reg putativ 99.3 9.3E-11 2E-15 106.1 18.1 205 51-258 137-382 (445)
213 KOG0732 AAA+-type ATPase conta 99.3 4.2E-11 9E-16 113.2 15.9 190 50-244 262-482 (1080)
214 PRK10923 glnG nitrogen regulat 99.3 3.9E-10 8.5E-15 102.7 22.1 206 51-259 136-382 (469)
215 PF07728 AAA_5: AAA domain (dy 99.3 1.3E-12 2.8E-17 98.8 4.7 112 76-192 1-139 (139)
216 PRK08485 DNA polymerase III su 99.3 3.5E-11 7.6E-16 93.2 12.2 135 104-247 25-172 (206)
217 PF00931 NB-ARC: NB-ARC domain 99.3 8.7E-11 1.9E-15 100.0 15.9 185 58-246 1-206 (287)
218 PRK05201 hslU ATP-dependent pr 99.3 3.3E-11 7.2E-16 104.3 13.1 108 141-248 249-404 (443)
219 PF01078 Mg_chelatase: Magnesi 99.3 1.5E-11 3.2E-16 96.7 9.4 126 52-180 2-158 (206)
220 PRK15115 response regulator Gl 99.3 7.1E-10 1.5E-14 100.3 21.5 206 54-262 135-381 (444)
221 TIGR02031 BchD-ChlD magnesium 99.3 2.1E-10 4.4E-15 106.1 17.4 190 70-262 12-255 (589)
222 PF07726 AAA_3: ATPase family 99.3 1.7E-11 3.7E-16 88.3 7.5 110 76-192 1-129 (131)
223 TIGR00764 lon_rel lon-related 99.3 3.6E-10 7.9E-15 104.7 18.2 126 140-265 216-391 (608)
224 smart00350 MCM minichromosome 99.3 1.3E-10 2.8E-15 106.0 15.0 156 52-214 202-401 (509)
225 KOG0735 AAA+-type ATPase [Post 99.3 9.9E-10 2.1E-14 99.2 20.0 207 53-265 408-648 (952)
226 PRK11361 acetoacetate metaboli 99.3 1.2E-09 2.5E-14 99.3 21.1 205 52-259 142-387 (457)
227 PRK13765 ATP-dependent proteas 99.2 7.8E-10 1.7E-14 102.2 18.2 123 140-262 225-397 (637)
228 TIGR01818 ntrC nitrogen regula 99.2 5.9E-10 1.3E-14 101.4 17.4 204 53-259 134-378 (463)
229 PF06144 DNA_pol3_delta: DNA p 99.2 2.5E-10 5.5E-15 89.5 11.6 163 77-248 1-172 (172)
230 PF00158 Sigma54_activat: Sigm 99.2 2.5E-10 5.4E-15 88.5 11.0 124 55-181 1-144 (168)
231 PF07724 AAA_2: AAA domain (Cd 99.2 2.1E-11 4.6E-16 94.7 5.0 106 75-182 4-131 (171)
232 TIGR00368 Mg chelatase-related 99.2 1.9E-09 4.2E-14 97.3 17.6 152 50-205 189-396 (499)
233 PF13173 AAA_14: AAA domain 99.2 4.3E-10 9.4E-15 83.6 11.2 120 75-205 3-127 (128)
234 PTZ00111 DNA replication licen 99.2 1E-09 2.3E-14 103.3 16.0 154 53-212 450-656 (915)
235 PRK04841 transcriptional regul 99.2 1.8E-08 3.9E-13 99.3 25.2 187 48-244 9-227 (903)
236 COG3283 TyrR Transcriptional r 99.2 6.9E-09 1.5E-13 86.9 18.5 205 51-258 202-442 (511)
237 PRK12377 putative replication 99.2 2.5E-10 5.5E-15 93.7 9.7 130 47-181 68-206 (248)
238 PRK08181 transposase; Validate 99.1 3E-10 6.5E-15 94.5 10.1 107 65-181 99-209 (269)
239 PF14532 Sigma54_activ_2: Sigm 99.1 2.2E-10 4.8E-15 86.3 8.1 125 56-199 1-137 (138)
240 PRK06526 transposase; Provisio 99.1 2.5E-10 5.3E-15 94.5 8.8 122 74-203 98-237 (254)
241 PRK08116 hypothetical protein; 99.1 1.7E-09 3.7E-14 90.5 13.2 153 46-202 78-251 (268)
242 smart00763 AAA_PrkA PrkA AAA d 99.1 2.1E-09 4.5E-14 91.9 13.8 93 139-231 234-348 (361)
243 PF05729 NACHT: NACHT domain 99.1 1.7E-09 3.7E-14 84.1 12.2 138 77-214 3-164 (166)
244 PRK10365 transcriptional regul 99.1 3.2E-08 6.9E-13 89.6 22.2 204 54-260 140-384 (441)
245 PF14516 AAA_35: AAA-like doma 99.1 8.2E-08 1.8E-12 83.1 23.6 231 54-293 12-289 (331)
246 KOG0741 AAA+-type ATPase [Post 99.1 8.6E-10 1.9E-14 96.5 11.0 160 77-241 259-445 (744)
247 COG3267 ExeA Type II secretory 99.1 3.4E-08 7.3E-13 79.4 18.1 187 58-247 36-250 (269)
248 COG1239 ChlI Mg-chelatase subu 99.1 4.8E-09 1E-13 90.1 14.0 164 51-215 15-234 (423)
249 COG1219 ClpX ATP-dependent pro 99.0 8.3E-09 1.8E-13 85.1 13.7 173 54-232 62-346 (408)
250 KOG2170 ATPase of the AAA+ sup 99.0 1E-08 2.3E-13 83.9 13.9 175 55-233 84-320 (344)
251 PRK07952 DNA replication prote 99.0 1.5E-09 3.2E-14 89.0 9.0 129 45-181 64-205 (244)
252 KOG0478 DNA replication licens 99.0 3.5E-09 7.7E-14 95.3 12.0 138 53-203 429-616 (804)
253 smart00382 AAA ATPases associa 99.0 1.7E-08 3.8E-13 76.0 12.6 95 75-180 3-125 (148)
254 COG0606 Predicted ATPase with 99.0 6.4E-09 1.4E-13 90.7 11.2 47 50-98 176-222 (490)
255 COG1241 MCM2 Predicted ATPase 99.0 3E-09 6.6E-14 97.8 9.7 145 52-203 285-473 (682)
256 COG2909 MalT ATP-dependent tra 99.0 2.1E-07 4.5E-12 86.4 21.1 183 47-236 13-227 (894)
257 PRK09183 transposase/IS protei 99.0 3.9E-09 8.4E-14 87.9 9.1 97 75-181 103-206 (259)
258 PF01695 IstB_IS21: IstB-like 98.9 2E-09 4.3E-14 84.4 6.8 97 74-181 47-150 (178)
259 KOG0745 Putative ATP-dependent 98.9 4.4E-08 9.4E-13 84.1 14.9 87 75-167 227-331 (564)
260 PF12774 AAA_6: Hydrolytic ATP 98.9 4.9E-07 1.1E-11 73.7 20.6 140 60-219 20-183 (231)
261 PLN03210 Resistant to P. syrin 98.9 7.2E-08 1.6E-12 96.7 18.9 189 50-242 181-395 (1153)
262 PRK09862 putative ATP-dependen 98.9 1.4E-07 3E-12 85.1 18.3 149 50-202 188-390 (506)
263 PRK06835 DNA replication prote 98.9 1.6E-08 3.5E-13 86.7 11.8 137 61-201 168-318 (329)
264 PRK13406 bchD magnesium chelat 98.9 8E-08 1.7E-12 88.4 16.8 202 58-262 8-247 (584)
265 PRK06921 hypothetical protein; 98.9 1.5E-08 3.3E-13 84.6 11.0 100 74-181 117-225 (266)
266 COG1220 HslU ATP-dependent pro 98.9 7.1E-08 1.5E-12 80.3 14.1 123 141-263 250-431 (444)
267 KOG0480 DNA replication licens 98.9 2.2E-08 4.8E-13 89.6 11.8 233 51-293 343-647 (764)
268 PF13191 AAA_16: AAA ATPase do 98.9 8.8E-09 1.9E-13 81.7 7.8 48 54-101 1-51 (185)
269 KOG0736 Peroxisome assembly fa 98.8 1.8E-07 3.9E-12 85.7 16.4 166 56-234 404-596 (953)
270 PF13401 AAA_22: AAA domain; P 98.8 6.1E-09 1.3E-13 77.7 5.9 104 75-180 5-125 (131)
271 COG1484 DnaC DNA replication p 98.8 1.7E-08 3.6E-13 83.7 8.6 118 58-181 88-209 (254)
272 KOG1051 Chaperone HSP104 and r 98.8 2.5E-07 5.3E-12 87.6 17.1 116 53-179 562-709 (898)
273 COG3284 AcoR Transcriptional a 98.8 4.8E-07 1E-11 81.7 17.9 170 77-250 339-540 (606)
274 PRK08939 primosomal protein Dn 98.8 1.8E-08 3.9E-13 85.7 8.4 127 49-181 123-261 (306)
275 KOG0477 DNA replication licens 98.8 1.2E-07 2.6E-12 84.8 13.2 227 53-288 449-756 (854)
276 PF12775 AAA_7: P-loop contain 98.7 1.2E-07 2.5E-12 79.5 11.1 148 64-215 25-195 (272)
277 COG1618 Predicted nucleotide k 98.7 5.2E-07 1.1E-11 67.4 12.2 27 76-102 7-33 (179)
278 KOG0741 AAA+-type ATPase [Post 98.7 9.8E-07 2.1E-11 77.8 15.6 153 76-247 540-720 (744)
279 PHA02774 E1; Provisional 98.7 7.6E-07 1.6E-11 80.4 14.3 138 60-219 419-587 (613)
280 PHA00729 NTP-binding motif con 98.6 5.9E-07 1.3E-11 72.2 10.9 125 67-212 10-139 (226)
281 PF03266 NTPase_1: NTPase; In 98.6 7.8E-08 1.7E-12 74.5 5.0 63 141-206 95-164 (168)
282 PF10443 RNA12: RNA12 protein; 98.6 1.4E-05 3E-10 69.7 19.0 106 142-248 149-284 (431)
283 PF07693 KAP_NTPase: KAP famil 98.5 2.2E-05 4.8E-10 68.1 20.2 108 141-248 172-320 (325)
284 COG1373 Predicted ATPase (AAA+ 98.5 3.6E-05 7.7E-10 68.3 20.8 133 60-207 24-161 (398)
285 COG3899 Predicted ATPase [Gene 98.5 1.1E-05 2.4E-10 78.1 18.9 193 55-248 2-266 (849)
286 COG5271 MDN1 AAA ATPase contai 98.5 1.8E-06 3.8E-11 85.3 12.9 156 62-231 1533-1717(4600)
287 COG4650 RtcR Sigma54-dependent 98.5 5.1E-06 1.1E-10 68.3 13.8 186 77-262 211-440 (531)
288 PF03969 AFG1_ATPase: AFG1-lik 98.5 3.2E-07 7E-12 79.7 7.3 117 74-200 62-201 (362)
289 COG5271 MDN1 AAA ATPase contai 98.5 4E-06 8.7E-11 82.9 14.6 169 53-234 865-1063(4600)
290 KOG2543 Origin recognition com 98.5 1.2E-05 2.7E-10 68.4 15.6 185 53-248 6-232 (438)
291 PRK04132 replication factor C 98.4 1.5E-07 3.2E-12 89.4 4.1 51 40-90 6-56 (846)
292 PF13604 AAA_30: AAA domain; P 98.4 2.3E-06 5.1E-11 68.3 10.3 114 62-181 7-131 (196)
293 KOG2228 Origin recognition com 98.4 3.5E-06 7.6E-11 70.5 11.3 160 54-213 25-219 (408)
294 PF00910 RNA_helicase: RNA hel 98.4 1.6E-06 3.4E-11 62.1 8.0 72 77-167 1-79 (107)
295 PTZ00202 tuzin; Provisional 98.4 5.2E-05 1.1E-09 66.5 17.9 51 48-98 257-310 (550)
296 PF00493 MCM: MCM2/3/5 family 98.4 3.9E-08 8.4E-13 85.0 -1.2 157 43-210 18-218 (331)
297 PRK10536 hypothetical protein; 98.4 1.5E-05 3.2E-10 65.3 13.7 44 53-98 55-98 (262)
298 PRK04296 thymidine kinase; Pro 98.4 3.3E-06 7.3E-11 67.1 9.8 95 77-180 5-115 (190)
299 cd00561 CobA_CobO_BtuR ATP:cor 98.3 7.6E-06 1.6E-10 62.3 9.9 106 76-182 4-139 (159)
300 PHA02624 large T antigen; Prov 98.3 3.9E-06 8.5E-11 76.2 9.6 119 60-199 416-561 (647)
301 TIGR02688 conserved hypothetic 98.3 7.7E-05 1.7E-09 65.3 16.5 94 68-180 205-312 (449)
302 KOG0481 DNA replication licens 98.3 1.2E-05 2.5E-10 70.9 11.3 133 52-194 330-507 (729)
303 PF12780 AAA_8: P-loop contain 98.3 4.5E-05 9.7E-10 63.7 14.3 151 55-215 10-212 (268)
304 PF10236 DAP3: Mitochondrial r 98.2 0.00013 2.7E-09 62.6 16.2 48 194-241 258-308 (309)
305 PF00519 PPV_E1_C: Papillomavi 98.2 1.1E-05 2.3E-10 69.2 9.1 137 60-218 247-414 (432)
306 PRK13695 putative NTPase; Prov 98.2 0.00011 2.5E-09 57.5 14.3 69 141-212 96-171 (174)
307 cd03216 ABC_Carb_Monos_I This 98.2 2.6E-05 5.5E-10 60.5 10.4 99 75-182 27-143 (163)
308 TIGR01613 primase_Cterm phage/ 98.2 5E-05 1.1E-09 65.1 13.1 220 53-301 48-299 (304)
309 PF04665 Pox_A32: Poxvirus A32 98.2 0.0003 6.5E-09 57.4 16.7 139 76-223 15-176 (241)
310 cd01120 RecA-like_NTPases RecA 98.2 2.5E-05 5.3E-10 60.3 10.2 26 77-102 2-27 (165)
311 PF06309 Torsin: Torsin; Inte 98.1 9E-06 1.9E-10 58.8 6.3 59 53-111 25-90 (127)
312 KOG0479 DNA replication licens 98.1 3.3E-05 7.1E-10 69.2 10.9 151 53-214 301-499 (818)
313 PF02562 PhoH: PhoH-like prote 98.1 1.1E-05 2.3E-10 64.3 7.0 37 141-180 119-155 (205)
314 KOG1051 Chaperone HSP104 and r 98.1 3.2E-05 6.9E-10 73.7 10.7 190 52-247 185-407 (898)
315 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.0 9.7E-05 2.1E-09 55.9 11.1 97 75-183 27-129 (144)
316 cd03222 ABC_RNaseL_inhibitor T 98.0 0.00011 2.3E-09 57.6 11.5 100 75-182 26-133 (177)
317 COG4088 Predicted nucleotide k 98.0 5.6E-05 1.2E-09 59.1 9.6 30 75-104 2-31 (261)
318 cd03228 ABCC_MRP_Like The MRP 98.0 9.1E-05 2E-09 57.9 10.9 44 141-184 114-158 (171)
319 KOG4658 Apoptotic ATPase [Sign 98.0 0.00017 3.6E-09 70.1 14.8 181 56-247 161-367 (889)
320 PF00448 SRP54: SRP54-type pro 98.0 9.5E-05 2.1E-09 58.9 11.1 102 77-179 4-124 (196)
321 COG1119 ModF ABC-type molybden 98.0 8.2E-05 1.8E-09 59.9 10.5 53 140-192 188-244 (257)
322 COG2884 FtsE Predicted ATPase 98.0 0.00013 2.7E-09 56.5 10.8 56 141-196 155-211 (223)
323 COG1485 Predicted ATPase [Gene 98.0 1E-05 2.3E-10 68.3 5.4 96 76-180 67-170 (367)
324 PRK14974 cell division protein 98.0 0.0001 2.2E-09 63.6 11.4 32 76-107 142-173 (336)
325 cd01124 KaiC KaiC is a circadi 98.0 4.4E-05 9.5E-10 60.5 8.7 34 77-110 2-35 (187)
326 PF09848 DUF2075: Uncharacteri 98.0 1.6E-05 3.5E-10 69.6 6.7 89 76-167 3-117 (352)
327 PRK08118 topology modulation p 98.0 8E-05 1.7E-09 57.8 9.7 24 75-98 2-25 (167)
328 TIGR02858 spore_III_AA stage I 98.0 0.0001 2.2E-09 61.6 10.8 33 68-100 105-137 (270)
329 PRK12723 flagellar biosynthesi 98.0 6.3E-05 1.4E-09 66.1 9.9 139 76-218 176-340 (388)
330 cd00267 ABC_ATPase ABC (ATP-bi 98.0 0.00013 2.9E-09 56.0 10.7 98 75-183 26-142 (157)
331 COG1419 FlhF Flagellar GTP-bin 98.0 0.00012 2.6E-09 63.5 11.2 140 60-203 185-351 (407)
332 TIGR00708 cobA cob(I)alamin ad 97.9 8.6E-05 1.9E-09 57.3 9.1 107 75-182 6-141 (173)
333 PF05970 PIF1: PIF1-like helic 97.9 7.3E-05 1.6E-09 65.7 10.0 43 58-100 6-48 (364)
334 TIGR01448 recD_rel helicase, p 97.9 0.00017 3.6E-09 68.9 12.8 102 75-180 339-452 (720)
335 PRK15455 PrkA family serine pr 97.9 1.6E-05 3.5E-10 72.1 5.5 49 51-99 74-128 (644)
336 PRK05986 cob(I)alamin adenolsy 97.9 6.1E-05 1.3E-09 59.0 8.0 107 75-182 23-159 (191)
337 PF10923 DUF2791: P-loop Domai 97.9 0.0019 4.2E-08 57.0 18.2 57 55-111 27-86 (416)
338 TIGR01447 recD exodeoxyribonuc 97.9 0.00014 3.1E-09 67.6 11.5 103 75-180 161-295 (586)
339 PRK05703 flhF flagellar biosyn 97.9 0.00031 6.7E-09 62.8 13.2 36 76-111 223-260 (424)
340 COG1126 GlnQ ABC-type polar am 97.9 0.0002 4.3E-09 56.7 10.4 41 141-181 154-196 (240)
341 PRK10875 recD exonuclease V su 97.9 0.00014 3E-09 67.8 11.2 103 75-180 168-301 (615)
342 cd03247 ABCC_cytochrome_bd The 97.9 0.00021 4.5E-09 56.2 10.8 44 141-184 116-160 (178)
343 cd01128 rho_factor Transcripti 97.9 4.5E-05 9.7E-10 63.0 7.1 29 73-101 15-43 (249)
344 cd03246 ABCC_Protease_Secretio 97.9 0.00025 5.4E-09 55.5 11.0 43 141-183 114-158 (173)
345 PF05272 VirE: Virulence-assoc 97.9 0.00017 3.7E-09 57.5 10.1 99 77-199 55-169 (198)
346 TIGR02768 TraA_Ti Ti-type conj 97.9 0.00017 3.7E-09 69.1 12.0 115 58-179 354-475 (744)
347 cd03214 ABC_Iron-Siderophores_ 97.9 0.00013 2.8E-09 57.5 9.4 108 75-183 26-160 (180)
348 PF13207 AAA_17: AAA domain; P 97.9 1.6E-05 3.5E-10 58.2 4.0 22 77-98 2-23 (121)
349 COG4619 ABC-type uncharacteriz 97.9 0.00012 2.6E-09 55.5 8.4 24 75-98 30-53 (223)
350 PF13671 AAA_33: AAA domain; P 97.8 3.4E-05 7.3E-10 58.3 5.5 22 77-98 2-23 (143)
351 PRK14532 adenylate kinase; Pro 97.8 0.00073 1.6E-08 53.6 13.3 23 76-98 2-24 (188)
352 TIGR03574 selen_PSTK L-seryl-t 97.8 8.1E-05 1.8E-09 62.0 8.0 27 77-103 2-28 (249)
353 PF08433 KTI12: Chromatin asso 97.8 8.6E-05 1.9E-09 62.1 8.1 97 75-178 2-106 (270)
354 PRK00771 signal recognition pa 97.8 0.00038 8.2E-09 62.2 12.4 37 76-112 97-133 (437)
355 cd01129 PulE-GspE PulE/GspE Th 97.8 0.00034 7.3E-09 58.6 11.4 50 50-100 57-106 (264)
356 PF04851 ResIII: Type III rest 97.8 0.00024 5.2E-09 55.9 10.1 43 57-99 7-50 (184)
357 cd00046 DEXDc DEAD-like helica 97.8 0.00012 2.5E-09 54.6 7.8 25 76-100 2-26 (144)
358 PRK11889 flhF flagellar biosyn 97.8 0.00022 4.8E-09 62.1 10.2 37 75-111 242-278 (436)
359 cd01131 PilT Pilus retraction 97.8 0.00035 7.5E-09 56.0 10.9 25 76-100 3-27 (198)
360 PRK08533 flagellar accessory p 97.8 0.00017 3.8E-09 59.1 9.3 30 76-105 26-55 (230)
361 TIGR02237 recomb_radB DNA repa 97.8 0.00016 3.6E-09 58.4 8.9 32 77-108 15-46 (209)
362 TIGR00174 miaA tRNA isopenteny 97.8 0.00039 8.6E-09 58.5 11.3 22 77-98 2-23 (287)
363 PRK06067 flagellar accessory p 97.8 0.00031 6.8E-09 57.8 10.6 44 65-108 14-59 (234)
364 PF13245 AAA_19: Part of AAA d 97.8 0.00013 2.8E-09 48.5 6.7 25 75-99 11-35 (76)
365 COG3854 SpoIIIAA ncharacterize 97.8 0.00065 1.4E-08 54.3 11.5 36 65-100 128-163 (308)
366 PRK09361 radB DNA repair and r 97.8 0.00027 5.8E-09 57.9 10.0 46 65-110 12-59 (225)
367 PRK07261 topology modulation p 97.8 0.00019 4.1E-09 56.0 8.5 23 76-98 2-24 (171)
368 PRK09376 rho transcription ter 97.7 8.2E-05 1.8E-09 64.6 6.7 29 73-101 168-196 (416)
369 TIGR01618 phage_P_loop phage n 97.7 7.9E-05 1.7E-09 60.1 6.3 22 75-96 13-34 (220)
370 PRK00091 miaA tRNA delta(2)-is 97.7 0.00042 9.2E-09 59.1 10.9 23 76-98 6-28 (307)
371 COG2804 PulE Type II secretory 97.7 0.00073 1.6E-08 60.3 12.6 115 49-182 234-362 (500)
372 KOG3347 Predicted nucleotide k 97.7 3.6E-05 7.7E-10 56.9 3.7 33 73-110 6-38 (176)
373 cd01121 Sms Sms (bacterial rad 97.7 0.00036 7.7E-09 61.2 10.6 39 64-102 70-110 (372)
374 COG2842 Uncharacterized ATPase 97.7 0.00099 2.1E-08 55.3 12.3 186 51-249 70-278 (297)
375 cd03213 ABCG_EPDR ABCG transpo 97.7 0.00039 8.4E-09 55.5 9.8 52 141-192 129-182 (194)
376 PF00437 T2SE: Type II/IV secr 97.7 0.0003 6.6E-09 59.3 9.5 52 50-101 101-154 (270)
377 cd03283 ABC_MutS-like MutS-lik 97.7 0.00032 7E-09 56.1 9.1 24 75-98 26-49 (199)
378 cd03281 ABC_MSH5_euk MutS5 hom 97.7 0.00038 8.1E-09 56.4 9.5 22 75-96 30-51 (213)
379 smart00487 DEXDc DEAD-like hel 97.7 0.00053 1.1E-08 54.4 10.4 38 142-179 130-168 (201)
380 TIGR03878 thermo_KaiC_2 KaiC d 97.7 0.00034 7.3E-09 58.5 9.5 35 77-111 39-73 (259)
381 PRK11823 DNA repair protein Ra 97.7 0.00038 8.3E-09 62.7 10.3 44 64-107 68-113 (446)
382 cd03230 ABC_DR_subfamily_A Thi 97.7 0.00068 1.5E-08 53.0 10.5 42 141-182 113-156 (173)
383 COG1125 OpuBA ABC-type proline 97.7 0.00046 1E-08 56.0 9.5 23 76-98 29-51 (309)
384 PRK13889 conjugal transfer rel 97.7 0.00024 5.2E-09 69.4 9.3 115 58-179 348-469 (988)
385 cd03115 SRP The signal recogni 97.6 0.00047 1E-08 53.9 9.4 34 77-110 3-36 (173)
386 cd03238 ABC_UvrA The excision 97.6 0.00097 2.1E-08 52.2 11.0 42 142-183 108-151 (176)
387 TIGR01359 UMP_CMP_kin_fam UMP- 97.6 0.00071 1.5E-08 53.4 10.4 22 77-98 2-23 (183)
388 COG1116 TauB ABC-type nitrate/ 97.6 0.00014 3E-09 58.9 6.2 24 76-99 31-54 (248)
389 cd03223 ABCD_peroxisomal_ALDP 97.6 0.0014 3E-08 50.9 11.7 103 75-182 28-149 (166)
390 PRK14528 adenylate kinase; Pro 97.6 0.0015 3.3E-08 51.7 12.0 24 75-98 2-25 (186)
391 PF01443 Viral_helicase1: Vira 97.6 0.0001 2.2E-09 60.6 5.5 21 77-97 1-21 (234)
392 PRK13900 type IV secretion sys 97.6 0.0039 8.5E-08 54.0 15.3 38 61-100 149-186 (332)
393 KOG3928 Mitochondrial ribosome 97.6 0.0061 1.3E-07 52.9 16.0 102 142-243 316-457 (461)
394 PRK12724 flagellar biosynthesi 97.6 0.0008 1.7E-08 59.3 11.0 35 77-111 226-261 (432)
395 PRK05800 cobU adenosylcobinami 97.6 0.00054 1.2E-08 53.3 9.1 23 76-98 3-25 (170)
396 TIGR01420 pilT_fam pilus retra 97.6 0.0012 2.5E-08 57.7 12.1 26 75-100 123-148 (343)
397 PF13086 AAA_11: AAA domain; P 97.6 0.00013 2.9E-09 59.8 6.0 37 60-98 5-41 (236)
398 COG1124 DppF ABC-type dipeptid 97.6 0.00027 5.8E-09 56.9 7.3 51 141-192 159-212 (252)
399 cd03215 ABC_Carb_Monos_II This 97.6 0.00028 6.1E-09 55.7 7.5 42 141-182 122-165 (182)
400 PRK12608 transcription termina 97.6 0.00018 3.9E-09 62.3 6.7 34 72-105 131-164 (380)
401 PRK06762 hypothetical protein; 97.6 0.0026 5.7E-08 49.3 12.8 23 76-98 4-26 (166)
402 TIGR02533 type_II_gspE general 97.6 0.0012 2.6E-08 60.1 12.1 52 49-101 218-269 (486)
403 COG4178 ABC-type uncharacteriz 97.6 0.00065 1.4E-08 62.4 10.2 41 141-181 533-574 (604)
404 TIGR02782 TrbB_P P-type conjug 97.6 0.00072 1.6E-08 57.7 10.0 49 49-99 105-157 (299)
405 TIGR03877 thermo_KaiC_1 KaiC d 97.6 0.00085 1.8E-08 55.4 10.2 47 65-111 10-58 (237)
406 cd02020 CMPK Cytidine monophos 97.6 0.0039 8.4E-08 47.1 13.2 22 77-98 2-23 (147)
407 TIGR00767 rho transcription te 97.6 0.00032 6.9E-09 61.3 7.8 29 73-101 167-195 (415)
408 PRK14722 flhF flagellar biosyn 97.6 0.00097 2.1E-08 58.2 10.8 24 75-98 138-161 (374)
409 cd03229 ABC_Class3 This class 97.6 0.0012 2.6E-08 51.9 10.5 43 141-183 118-163 (178)
410 KOG1808 AAA ATPase containing 97.5 0.00088 1.9E-08 68.4 11.4 150 55-213 419-599 (1856)
411 cd01394 radB RadB. The archaea 97.5 0.0013 2.7E-08 53.6 10.7 44 65-108 8-53 (218)
412 PRK06547 hypothetical protein; 97.5 0.00021 4.5E-09 55.7 5.6 34 65-98 6-39 (172)
413 PRK12727 flagellar biosynthesi 97.5 0.0029 6.4E-08 57.4 13.5 26 75-100 351-376 (559)
414 CHL00195 ycf46 Ycf46; Provisio 97.5 0.02 4.3E-07 52.3 18.9 119 141-260 81-203 (489)
415 PF01745 IPT: Isopentenyl tran 97.5 0.0026 5.6E-08 50.5 11.3 144 76-232 3-160 (233)
416 COG1136 SalX ABC-type antimicr 97.5 0.001 2.2E-08 53.7 9.4 41 141-181 160-203 (226)
417 PLN02840 tRNA dimethylallyltra 97.5 0.0033 7.2E-08 55.6 13.2 24 76-99 23-46 (421)
418 PRK14531 adenylate kinase; Pro 97.5 0.0018 3.8E-08 51.2 10.6 23 76-98 4-26 (183)
419 PHA02530 pseT polynucleotide k 97.5 0.0016 3.4E-08 55.9 11.1 23 76-98 4-26 (300)
420 PF05707 Zot: Zonular occluden 97.5 0.00012 2.6E-09 58.4 3.9 60 141-200 79-146 (193)
421 COG1117 PstB ABC-type phosphat 97.5 0.00054 1.2E-08 54.1 7.3 45 51-97 12-56 (253)
422 TIGR02525 plasmid_TraJ plasmid 97.5 0.0024 5.2E-08 56.0 12.2 26 75-100 150-175 (372)
423 cd03232 ABC_PDR_domain2 The pl 97.5 0.0013 2.7E-08 52.5 9.8 42 141-182 126-169 (192)
424 PRK04328 hypothetical protein; 97.5 0.0012 2.6E-08 54.9 10.0 46 65-110 12-59 (249)
425 TIGR00416 sms DNA repair prote 97.5 0.0017 3.7E-08 58.7 11.5 42 62-103 80-123 (454)
426 cd00464 SK Shikimate kinase (S 97.5 0.0013 2.7E-08 50.3 9.4 22 77-98 2-23 (154)
427 PRK12726 flagellar biosynthesi 97.5 0.0011 2.4E-08 57.6 9.8 37 76-112 208-244 (407)
428 PRK13833 conjugal transfer pro 97.5 0.00096 2.1E-08 57.2 9.4 47 51-99 119-169 (323)
429 COG1131 CcmA ABC-type multidru 97.5 0.00065 1.4E-08 57.8 8.3 51 140-191 153-206 (293)
430 COG2274 SunT ABC-type bacterio 97.5 0.00092 2E-08 63.4 10.0 43 140-182 626-669 (709)
431 PRK00131 aroK shikimate kinase 97.5 0.00018 3.9E-09 56.3 4.6 25 74-98 4-28 (175)
432 PRK06696 uridine kinase; Valid 97.5 0.00026 5.7E-09 57.8 5.7 45 58-102 3-50 (223)
433 COG1121 ZnuC ABC-type Mn/Zn tr 97.4 0.0016 3.4E-08 53.5 9.9 45 141-185 157-203 (254)
434 PRK13826 Dtr system oriT relax 97.4 0.00052 1.1E-08 67.6 8.4 114 59-179 384-504 (1102)
435 TIGR00064 ftsY signal recognit 97.4 0.0017 3.7E-08 54.6 10.5 36 76-111 74-109 (272)
436 PRK10436 hypothetical protein; 97.4 0.0037 8E-08 56.5 13.2 50 51-101 196-245 (462)
437 TIGR03499 FlhF flagellar biosy 97.4 0.0004 8.6E-09 58.8 6.7 36 76-111 196-233 (282)
438 cd02019 NK Nucleoside/nucleoti 97.4 0.00027 5.8E-09 46.0 4.4 22 77-98 2-23 (69)
439 COG4555 NatA ABC-type Na+ tran 97.4 0.002 4.3E-08 50.6 9.8 56 140-196 150-207 (245)
440 COG0324 MiaA tRNA delta(2)-iso 97.4 0.0016 3.5E-08 55.0 10.1 159 75-255 4-177 (308)
441 TIGR02538 type_IV_pilB type IV 97.4 0.0031 6.8E-08 58.7 13.0 49 51-100 294-342 (564)
442 TIGR02012 tigrfam_recA protein 97.4 0.0025 5.4E-08 54.6 11.4 26 77-102 58-83 (321)
443 TIGR02788 VirB11 P-type DNA tr 97.4 0.0022 4.8E-08 55.1 11.2 25 75-99 145-169 (308)
444 cd01428 ADK Adenylate kinase ( 97.4 0.0018 4E-08 51.5 10.1 22 77-98 2-23 (194)
445 cd01878 HflX HflX subfamily. 97.4 0.018 3.9E-07 46.2 15.9 23 75-97 42-64 (204)
446 PRK04040 adenylate kinase; Pro 97.4 0.0029 6.2E-08 50.1 11.0 23 76-98 4-26 (188)
447 cd03227 ABC_Class2 ABC-type Cl 97.4 0.0032 7E-08 48.6 11.0 102 76-182 23-142 (162)
448 PRK13764 ATPase; Provisional 97.4 0.00078 1.7E-08 62.4 8.7 28 75-102 258-285 (602)
449 PRK13539 cytochrome c biogenes 97.4 0.0016 3.4E-08 52.6 9.6 46 141-186 145-192 (207)
450 COG1122 CbiO ABC-type cobalt t 97.4 0.00029 6.4E-09 57.6 5.4 45 141-185 156-203 (235)
451 PRK13894 conjugal transfer ATP 97.4 0.0013 2.8E-08 56.6 9.5 48 49-98 121-172 (319)
452 PRK00279 adk adenylate kinase; 97.4 0.0023 5.1E-08 51.9 10.6 23 76-98 2-24 (215)
453 TIGR01425 SRP54_euk signal rec 97.4 0.0014 3E-08 58.3 9.8 35 76-110 102-136 (429)
454 PF09439 SRPRB: Signal recogni 97.4 0.001 2.2E-08 51.9 8.0 101 75-184 4-125 (181)
455 PF13238 AAA_18: AAA domain; P 97.4 0.00015 3.3E-09 53.5 3.2 22 77-98 1-22 (129)
456 PRK14737 gmk guanylate kinase; 97.4 0.002 4.3E-08 51.0 9.6 24 75-98 5-28 (186)
457 PF03308 ArgK: ArgK protein; 97.4 0.00038 8.1E-09 56.9 5.5 41 76-116 31-71 (266)
458 PRK05973 replicative DNA helic 97.4 0.0023 5E-08 52.4 10.2 35 77-111 67-101 (237)
459 cd01130 VirB11-like_ATPase Typ 97.4 0.0017 3.7E-08 51.4 9.3 39 59-99 12-50 (186)
460 PRK13947 shikimate kinase; Pro 97.4 0.00025 5.4E-09 55.3 4.4 24 75-98 2-25 (171)
461 COG2805 PilT Tfp pilus assembl 97.4 0.01 2.2E-07 49.6 13.7 28 75-102 126-153 (353)
462 PF00406 ADK: Adenylate kinase 97.4 0.0019 4.2E-08 49.2 9.2 20 79-98 1-20 (151)
463 PRK03839 putative kinase; Prov 97.4 0.00022 4.7E-09 56.2 4.1 23 76-98 2-24 (180)
464 cd03264 ABC_drug_resistance_li 97.4 0.0006 1.3E-08 55.2 6.8 44 140-183 147-191 (211)
465 KOG2383 Predicted ATPase [Gene 97.4 0.00035 7.6E-09 60.2 5.4 40 141-180 193-233 (467)
466 cd03269 ABC_putative_ATPase Th 97.4 0.0022 4.8E-08 51.8 10.0 43 140-182 145-189 (210)
467 cd03251 ABCC_MsbA MsbA is an e 97.4 0.0032 7E-08 51.8 11.1 44 141-184 156-200 (234)
468 PRK02496 adk adenylate kinase; 97.3 0.0035 7.7E-08 49.5 10.9 23 76-98 3-25 (184)
469 TIGR02868 CydC thiol reductant 97.3 0.00079 1.7E-08 62.6 8.1 41 140-180 487-528 (529)
470 cd03282 ABC_MSH4_euk MutS4 hom 97.3 0.0023 4.9E-08 51.5 9.6 23 75-97 30-52 (204)
471 PRK07667 uridine kinase; Provi 97.3 0.00054 1.2E-08 54.6 6.0 36 76-111 19-54 (193)
472 PF08303 tRNA_lig_kinase: tRNA 97.3 0.016 3.5E-07 44.1 13.4 123 79-215 4-145 (168)
473 PRK14729 miaA tRNA delta(2)-is 97.3 0.0017 3.8E-08 55.0 9.2 22 76-97 6-27 (300)
474 cd03233 ABC_PDR_domain1 The pl 97.3 0.0034 7.3E-08 50.5 10.6 40 141-180 136-178 (202)
475 TIGR00959 ffh signal recogniti 97.3 0.02 4.3E-07 51.3 16.1 35 77-111 102-137 (428)
476 cd00983 recA RecA is a bacter 97.3 0.0025 5.4E-08 54.6 9.9 26 77-102 58-83 (325)
477 cd03263 ABC_subfamily_A The AB 97.3 0.0024 5.3E-08 52.0 9.7 44 140-183 150-194 (220)
478 cd03268 ABC_BcrA_bacitracin_re 97.3 0.0023 5E-08 51.7 9.4 42 141-182 144-187 (208)
479 smart00534 MUTSac ATPase domai 97.3 0.0026 5.7E-08 50.3 9.5 20 77-96 2-21 (185)
480 PRK00625 shikimate kinase; Pro 97.3 0.00033 7.1E-09 54.6 4.2 23 76-98 2-24 (173)
481 COG1066 Sms Predicted ATP-depe 97.3 0.0049 1.1E-07 53.6 11.5 41 62-102 79-121 (456)
482 cd03225 ABC_cobalt_CbiO_domain 97.3 0.0018 4E-08 52.3 8.7 43 140-182 151-195 (211)
483 cd04124 RabL2 RabL2 subfamily. 97.3 0.0034 7.3E-08 48.4 9.8 22 77-98 3-24 (161)
484 KOG0066 eIF2-interacting prote 97.3 0.0018 3.8E-08 56.7 8.7 60 141-205 722-782 (807)
485 COG1100 GTPase SAR1 and relate 97.3 0.0049 1.1E-07 50.0 11.2 101 76-184 7-124 (219)
486 COG1120 FepC ABC-type cobalami 97.3 0.0019 4E-08 53.3 8.5 41 141-181 156-199 (258)
487 TIGR01351 adk adenylate kinase 97.3 0.0037 8E-08 50.6 10.3 22 77-98 2-23 (210)
488 TIGR00960 3a0501s02 Type II (G 97.3 0.0018 3.9E-08 52.6 8.6 44 140-183 155-200 (216)
489 cd03217 ABC_FeS_Assembly ABC-t 97.3 0.0013 2.8E-08 52.8 7.5 42 141-182 122-165 (200)
490 PRK09270 nucleoside triphospha 97.3 0.00093 2E-08 54.8 6.8 48 60-107 18-66 (229)
491 TIGR00150 HI0065_YjeE ATPase, 97.3 0.00072 1.6E-08 50.0 5.4 24 76-99 24-47 (133)
492 PF06745 KaiC: KaiC; InterPro 97.3 0.00064 1.4E-08 55.7 5.8 23 76-98 21-43 (226)
493 cd03237 ABC_RNaseL_inhibitor_d 97.2 0.0043 9.4E-08 51.5 10.7 82 140-222 132-222 (246)
494 PRK10416 signal recognition pa 97.2 0.0018 3.9E-08 55.7 8.6 34 76-109 116-149 (318)
495 COG3378 Phage associated DNA p 97.2 0.0048 1E-07 56.1 11.6 134 52-200 201-358 (517)
496 PLN02348 phosphoribulokinase 97.2 0.028 6E-07 49.3 15.8 43 58-100 32-75 (395)
497 TIGR02238 recomb_DMC1 meiotic 97.2 0.0051 1.1E-07 52.8 11.3 22 77-98 99-120 (313)
498 cd03218 ABC_YhbG The ABC trans 97.2 0.0014 3E-08 53.9 7.7 44 140-183 150-195 (232)
499 PF00071 Ras: Ras family; Int 97.2 0.0093 2E-07 45.8 11.9 22 77-98 2-23 (162)
500 PRK10867 signal recognition pa 97.2 0.0028 6E-08 56.7 9.9 36 77-112 103-139 (433)
No 1
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=100.00 E-value=3.8e-43 Score=282.60 Aligned_cols=269 Identities=37% Similarity=0.656 Sum_probs=243.6
Q ss_pred CCcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccC-cccccEEEEecCCCcc
Q 021660 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA-QYHNMILELNASDDRG 117 (309)
Q Consensus 39 ~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~ 117 (309)
....|.++|+|+++++++||+.++..|.+.+.+...|++|||||||||||+++.+++++++++ -+...+.+.+.++.++
T Consensus 22 ~~~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderG 101 (346)
T KOG0989|consen 22 KHRSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERG 101 (346)
T ss_pred CccchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccc
Confidence 556799999999999999999999999999999888999999999999999999999999884 4566677888888888
Q ss_pred hHHHHHHHHHhhhcccccc---C-CCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhccee
Q 021660 118 IDVVRQQIQDFASTQSFSF---G-VKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCT 193 (309)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~---~-~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~l~~r~~ 193 (309)
...++..+..+.......- + .-...+++||||+|.|+.++++.|.+.|++.+..++||++||....++..+.+||.
T Consensus 102 isvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~ 181 (346)
T KOG0989|consen 102 ISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQ 181 (346)
T ss_pred ccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHH
Confidence 8888888887766544321 1 11245899999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcC-HHHHHhhhCCCChHHHHH
Q 021660 194 RFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQIT-EEAVYLCTGNPLPKDIEQ 272 (309)
Q Consensus 194 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~~~i~-~~~v~~~~~~~~~~~~~~ 272 (309)
.+.|++++.+.+...|+.++.++|+.++++++..|++.++|++|.++..||.++..++.|+ ...++.+.+...++.+.+
T Consensus 182 KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~~gk~It~~~~~e~~~GvVp~~~l~~ 261 (346)
T KOG0989|consen 182 KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLSLLGKRITTSLVNEELAGVVPDEKLLD 261 (346)
T ss_pred HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhhccCcccchHHHHHHHhccCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999989999 445556666899999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 273 ISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 273 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
+++....+|........++++ +.|.+|.+++++|.
T Consensus 262 lle~a~S~d~~~~v~~~Rei~-~sg~~~~~lmsQLa 296 (346)
T KOG0989|consen 262 LLELALSADTPNTVKRVREIM-RSGYSPLQLMSQLA 296 (346)
T ss_pred HHHHHHccChHHHHHHHHHHH-HhccCHHHHHHHHH
Confidence 999999999999999999999 99999999999885
No 2
>PLN03025 replication factor C subunit; Provisional
Probab=100.00 E-value=9.1e-42 Score=292.94 Aligned_cols=265 Identities=43% Similarity=0.696 Sum_probs=240.1
Q ss_pred cChhhhcCCCCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHH
Q 021660 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDV 120 (309)
Q Consensus 41 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (309)
.||.+||||.++++++|+++++..|..++..+..++++|+||||+|||++++.+++++.+.++...+.+++..+..+.+.
T Consensus 1 ~~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~ 80 (319)
T PLN03025 1 LPWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDV 80 (319)
T ss_pred CChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHH
Confidence 37999999999999999999999999999999889999999999999999999999998877777788888887777777
Q ss_pred HHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEecCC
Q 021660 121 VRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPL 200 (309)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~l~~r~~~i~~~~~ 200 (309)
++..+..+...... +. ..+.++++|||+|.++...++.|.+.++.++..+++|+++|...++.+.+++||..+.|.++
T Consensus 81 vr~~i~~~~~~~~~-~~-~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l 158 (319)
T PLN03025 81 VRNKIKMFAQKKVT-LP-PGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRL 158 (319)
T ss_pred HHHHHHHHHhcccc-CC-CCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCC
Confidence 77777766543221 11 12578999999999999999999999999888899999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcCHHHHHhhhCCCChHHHHHHHHHHhcC
Q 021660 201 EPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280 (309)
Q Consensus 201 ~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~ 280 (309)
+.+++..++..+++++|+.+++++++.+++.++||+|.+++.|+.+....+.|+.+++.+.++......++.+++++..+
T Consensus 159 ~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~~~~ 238 (319)
T PLN03025 159 SDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNCLKG 238 (319)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999766544679999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 281 SFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 281 ~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
+...++..+.+++ ..|++|.+|+..|.
T Consensus 239 ~~~~a~~~l~~ll-~~g~~~~~Il~~l~ 265 (319)
T PLN03025 239 KFDDACDGLKQLY-DLGYSPTDIITTLF 265 (319)
T ss_pred CHHHHHHHHHHHH-HcCCCHHHHHHHHH
Confidence 9999999999999 88999999998874
No 3
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=100.00 E-value=2.3e-41 Score=261.92 Aligned_cols=268 Identities=41% Similarity=0.663 Sum_probs=253.6
Q ss_pred CCcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcch
Q 021660 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 118 (309)
Q Consensus 39 ~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 118 (309)
-..+|.++|||..+.|+||+++.++.+.-....+.+|+++|.||||+||||.+.++|+++.+..+...+.+++.++.++.
T Consensus 13 ~~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGI 92 (333)
T KOG0991|consen 13 YQLPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGI 92 (333)
T ss_pred ccchHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccccc
Confidence 44669999999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred HHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEec
Q 021660 119 DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFA 198 (309)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~l~~r~~~i~~~ 198 (309)
+.++..++.+++.....-.. +.+++|+||+|.+....+.+|...|+-++..++|.++||...++.+.+.+||..+.|.
T Consensus 93 DvVRn~IK~FAQ~kv~lp~g--rhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~s~KIiEPIQSRCAiLRys 170 (333)
T KOG0991|consen 93 DVVRNKIKMFAQKKVTLPPG--RHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSEKIIEPIQSRCAILRYS 170 (333)
T ss_pred HHHHHHHHHHHHhhccCCCC--ceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhhcchhhhhhhHHhhhHhhhhc
Confidence 99999999988765542222 6789999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcCHHHHHhhhCCCChHHHHHHHHHHh
Q 021660 199 PLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLL 278 (309)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~ 278 (309)
.+++.++...+...++.+++.++++.++.+.-.+.||+|.++|.||......+.++.+.|...++.+....+.+++....
T Consensus 171 klsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~ 250 (333)
T KOG0991|consen 171 KLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL 250 (333)
T ss_pred ccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCHHHHHHHhhC
Q 021660 279 NESFADSFKRISEMKMRKGLALVDIVREVTM 309 (309)
Q Consensus 279 ~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~ 309 (309)
..+.+.+++.++++- +.|+||.+|+..++|
T Consensus 251 ~~~~~~A~~il~~lw-~lgysp~Dii~~~FR 280 (333)
T KOG0991|consen 251 KRNIDEALKILAELW-KLGYSPEDIITTLFR 280 (333)
T ss_pred hccHHHHHHHHHHHH-HcCCCHHHHHHHHHH
Confidence 999999999999988 999999999998875
No 4
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4.8e-40 Score=287.13 Aligned_cols=264 Identities=19% Similarity=0.331 Sum_probs=233.9
Q ss_pred CCcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCc---------------
Q 021660 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ--------------- 102 (309)
Q Consensus 39 ~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~--------------- 102 (309)
+..+|+++|||.+|++++||++++..|..++..++.++ ++|+||+|+|||++|+.+++.+.+..
T Consensus 4 ~~~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~ 83 (484)
T PRK14956 4 THEVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLE 83 (484)
T ss_pred CcchhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHH
Confidence 45679999999999999999999999999999999887 89999999999999999999998742
Q ss_pred ----ccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEe
Q 021660 103 ----YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC 178 (309)
Q Consensus 103 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~ 178 (309)
....+.+++.....+.+.++........... ...++|+||||+|.++.+.++.|++.+++++.++.||++|
T Consensus 84 i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~-----~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaT 158 (484)
T PRK14956 84 ITKGISSDVLEIDAASNRGIENIRELRDNVKFAPM-----GGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILAT 158 (484)
T ss_pred HHccCCccceeechhhcccHHHHHHHHHHHHhhhh-----cCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeec
Confidence 2335677777666677777766555432211 1257899999999999999999999999999999999999
Q ss_pred cCCcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHh-hcCCcCHHH
Q 021660 179 NQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM-ASQQITEEA 257 (309)
Q Consensus 179 ~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~-~~~~i~~~~ 257 (309)
+...++.+++++||+.+.|.+++.+++.+++++++..+|+.++++++..|++.++|++|.+++.|+.+.. ..+.++.+.
T Consensus 159 te~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~~~~it~~~ 238 (484)
T PRK14956 159 TEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDSKLTGVK 238 (484)
T ss_pred CChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhCCCCcCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999977553 346799999
Q ss_pred HHhhhCCCChHHHHHHHHHHhcCCH-HHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 258 VYLCTGNPLPKDIEQISYWLLNESF-ADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 258 v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
|.+.++...++.++++++++.++|. ..++.++++++ ..|++|.+++..|.
T Consensus 239 V~~~lg~~~~~~~~~l~~si~~~d~~~~al~~l~~l~-~~G~d~~~~~~~l~ 289 (484)
T PRK14956 239 IRKMIGYHGIEFLTSFIKSLIDPDNHSKSLEILESLY-QEGQDIYKFLWDSI 289 (484)
T ss_pred HHHHhCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HcCCCHHHHHHHHH
Confidence 9999999999999999999999875 58999999999 99999999988764
No 5
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4.1e-39 Score=288.89 Aligned_cols=262 Identities=20% Similarity=0.351 Sum_probs=237.0
Q ss_pred CcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCc----------------
Q 021660 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ---------------- 102 (309)
Q Consensus 40 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~---------------- 102 (309)
..+|.+||||.+|+++|||+++++.|.+++..++.++ +||+||+|+|||++|+.+++.++|..
T Consensus 3 y~~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i 82 (509)
T PRK14958 3 HQVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREI 82 (509)
T ss_pred chhHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHH
Confidence 4579999999999999999999999999999999888 79999999999999999999998742
Q ss_pred ---ccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021660 103 ---YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (309)
Q Consensus 103 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~ 179 (309)
...++++++.....+.+.++..+........ ..+.+|+||||+|.++.+..+.|++.|+++++++.||++|+
T Consensus 83 ~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~-----~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlatt 157 (509)
T PRK14958 83 DEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPT-----KGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATT 157 (509)
T ss_pred hcCCCceEEEEcccccCCHHHHHHHHHHHhhccc-----cCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 2345888888777888888877766543322 12578999999999999999999999999999999999999
Q ss_pred CCcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCcCHHHH
Q 021660 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEAV 258 (309)
Q Consensus 180 ~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~-~~i~~~~v 258 (309)
+..+++..+.+||..++|.+++.+++..++.++++++|+.++++++..|++.++|++|.+++.++.+..++ +.|+.++|
T Consensus 158 d~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~ia~~~~~It~~~V 237 (509)
T PRK14958 158 DHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADV 237 (509)
T ss_pred ChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998776554 68999999
Q ss_pred HhhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHh
Q 021660 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREV 307 (309)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l 307 (309)
..+++......++++++++..+|...++..+++++ ..|.++..++..|
T Consensus 238 ~~~lg~~~~~~i~~ll~al~~~d~~~~l~~~~~l~-~~g~~~~~il~~l 285 (509)
T PRK14958 238 KTMLGTIEPLLLFDILEALAAKAGDRLLGCVTRLV-EQGVDFSNALADL 285 (509)
T ss_pred HHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHH
Confidence 99999999999999999999999999999999999 9999998777655
No 6
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.1e-38 Score=284.10 Aligned_cols=265 Identities=22% Similarity=0.339 Sum_probs=237.5
Q ss_pred CCCcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCc--------------
Q 021660 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ-------------- 102 (309)
Q Consensus 38 ~~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~-------------- 102 (309)
.+..+|.++|||.+|++++||+++++.+.+.+..++.++ ++|+||+|+|||++|+.+++.++|..
T Consensus 6 ~~y~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C 85 (507)
T PRK06645 6 NQYIPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC 85 (507)
T ss_pred ccccchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC
Confidence 356789999999999999999999999999988887665 99999999999999999999998742
Q ss_pred ---------ccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCce
Q 021660 103 ---------YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTR 173 (309)
Q Consensus 103 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~ 173 (309)
....+.+++.....+.+.++..+......+ +. ..++++||||+|.++...++.|++.++++++.+.
T Consensus 86 ~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P---~~--~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~v 160 (507)
T PRK06645 86 TNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKP---LQ--GKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHII 160 (507)
T ss_pred hHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhcc---cc--CCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEE
Confidence 234677888777778888888776654332 12 2689999999999999999999999999999999
Q ss_pred EEEEecCCcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc---
Q 021660 174 FALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS--- 250 (309)
Q Consensus 174 ~i~~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~--- 250 (309)
||++++...++++++.+||..++|.+++.+++..+++.+++++|+.+++++++.|++.++|++|.+++.|+++...+
T Consensus 161 fI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~Ldkai~~~~~~ 240 (507)
T PRK06645 161 FIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMSAKS 240 (507)
T ss_pred EEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999886544
Q ss_pred -CCcCHHHHHhhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 251 -QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 251 -~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
+.||.++|.++++......++++++++..++...++..+.+++ ..|.+|..++..|.
T Consensus 241 ~~~It~~~V~~llg~~~~~~if~L~~ai~~~d~~~Al~~l~~L~-~~g~~~~~~l~~l~ 298 (507)
T PRK06645 241 DNIISPQVINQMLGLVDSSVIIEFVEYIIHRETEKAINLINKLY-GSSVNLEIFIESVS 298 (507)
T ss_pred CCCcCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHH
Confidence 2699999999999999999999999999999999999999999 99999999886553
No 7
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=8.8e-39 Score=288.85 Aligned_cols=262 Identities=22% Similarity=0.332 Sum_probs=233.7
Q ss_pred CcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCc----------------
Q 021660 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ---------------- 102 (309)
Q Consensus 40 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~---------------- 102 (309)
...|.+||||++|+++|||+++++.|.+++..++.++ +||+||+|+|||++++.+++.++|+.
T Consensus 3 Y~vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I 82 (830)
T PRK07003 3 YQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREI 82 (830)
T ss_pred cHhHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHH
Confidence 4568999999999999999999999999999998888 79999999999999999999998742
Q ss_pred ---ccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021660 103 ---YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (309)
Q Consensus 103 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~ 179 (309)
...++++++.....+.+.++..+........ ..+.+|+||||+|.|+...++.|++.|++++.++.||++|+
T Consensus 83 ~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~-----~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTt 157 (830)
T PRK07003 83 DEGRFVDYVEMDAASNRGVDEMAALLERAVYAPV-----DARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATT 157 (830)
T ss_pred hcCCCceEEEecccccccHHHHHHHHHHHHhccc-----cCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 1235788888777788888877765543211 12578999999999999999999999999999999999999
Q ss_pred CCcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhh-cCCcCHHHH
Q 021660 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEEAV 258 (309)
Q Consensus 180 ~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~-~~~i~~~~v 258 (309)
+..++.+.+++||+.+.|.+++.+++.++|++++..+++.++++.+..|++.++|++|.++++++.+..+ .+.|+.+.|
T Consensus 158 d~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia~~~~~It~~~V 237 (830)
T PRK07003 158 DPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAV 237 (830)
T ss_pred ChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998665544 468999999
Q ss_pred HhhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHh
Q 021660 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREV 307 (309)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l 307 (309)
..+++......++++++.+..++...++..+.+++ ..|.+...++..|
T Consensus 238 ~~~LG~~d~~~i~~ll~aL~~~d~~~~l~~~~~l~-~~g~~~~~~l~dL 285 (830)
T PRK07003 238 SGMLGALDQTYMVRLLDALAAGDGPEILAVADEMA-LRSLSFSTALQDL 285 (830)
T ss_pred HHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCHHHHHHHH
Confidence 99999999999999999999999999999999999 8999877666554
No 8
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.1e-38 Score=281.73 Aligned_cols=259 Identities=23% Similarity=0.356 Sum_probs=234.7
Q ss_pred ChhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccC-------------------
Q 021660 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGA------------------- 101 (309)
Q Consensus 42 ~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~------------------- 101 (309)
.|+++|||.+|+++|||+.+++.+.+++..++.++ ++|+||+|+||||+|+.+++.++|.
T Consensus 2 ~la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~ 81 (491)
T PRK14964 2 NLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKN 81 (491)
T ss_pred ChhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhc
Confidence 48899999999999999999999999999998886 9999999999999999999998763
Q ss_pred cccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCC
Q 021660 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQV 181 (309)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~ 181 (309)
+...++++++.....+.+.++..+......+. . .+++++||||+|.++.+..+.|++.++++++.+.||++++..
T Consensus 82 ~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~---~--~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~ 156 (491)
T PRK14964 82 SNHPDVIEIDAASNTSVDDIKVILENSCYLPI---S--SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEV 156 (491)
T ss_pred cCCCCEEEEecccCCCHHHHHHHHHHHHhccc---c--CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 24567889998877888888887766543322 2 268999999999999999999999999999999999999999
Q ss_pred cccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCcCHHHHHh
Q 021660 182 NKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEAVYL 260 (309)
Q Consensus 182 ~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~-~~i~~~~v~~ 260 (309)
.++++.+.+||+.++|.+++.+++..++.++++++|+.+++++++.|++.++|++|.+++.|+++..++ +.||.++|.+
T Consensus 157 ~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslLdqli~y~~~~It~e~V~~ 236 (491)
T PRK14964 157 KKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISEKSVRD 236 (491)
T ss_pred HHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999887654 6799999999
Q ss_pred hhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHh
Q 021660 261 CTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREV 307 (309)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l 307 (309)
+++......++++++++.++|...++..+++++ ..| +|..++..|
T Consensus 237 llg~~~~~~If~L~~aI~~~d~~~Al~~l~~Ll-~~g-~~~~i~~~l 281 (491)
T PRK14964 237 LLGCVDKHILEDLVEAILLGDAQSALNVFRELC-NTS-NPVIILEGM 281 (491)
T ss_pred HHccCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcC-CHHHHHHHH
Confidence 999999999999999999999999999999999 655 788887765
No 9
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.5e-38 Score=280.96 Aligned_cols=262 Identities=24% Similarity=0.395 Sum_probs=232.0
Q ss_pred cChhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCc-----------------
Q 021660 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ----------------- 102 (309)
Q Consensus 41 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~----------------- 102 (309)
..|.++|||.+|++++||+++.+.+.+.+..++.++ ++|+||||+||||+|+.+++.+.+..
T Consensus 2 ~~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~ 81 (472)
T PRK14962 2 EALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSID 81 (472)
T ss_pred chhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHh
Confidence 458999999999999999999999999999998877 89999999999999999999997642
Q ss_pred --ccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecC
Q 021660 103 --YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (309)
Q Consensus 103 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~ 180 (309)
....+.+++.....+.+.++.... .....+. + ..+++++|||+|.+..+.++.|++.+++++..+++|++++.
T Consensus 82 ~g~~~dv~el~aa~~~gid~iR~i~~-~~~~~p~-~---~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn 156 (472)
T PRK14962 82 EGTFMDVIELDAASNRGIDEIRKIRD-AVGYRPM-E---GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTN 156 (472)
T ss_pred cCCCCccEEEeCcccCCHHHHHHHHH-HHhhChh-c---CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCC
Confidence 133677788776677777765443 3332221 1 25789999999999998999999999999888999988887
Q ss_pred CcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCcCHHHHH
Q 021660 181 VNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEAVY 259 (309)
Q Consensus 181 ~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~-~~i~~~~v~ 259 (309)
+..+.+++.+||..+.|.+++.+++..++++.+..+++.+++++++.|++.++||+|.+++.|+.+.... +.||.+++.
T Consensus 157 ~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~e~V~ 236 (472)
T PRK14962 157 LEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVH 236 (472)
T ss_pred hHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 7889999999999999999999999999999999999999999999999999999999999999877654 569999999
Q ss_pred hhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 260 LCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
.+++....+.++++++++.++|++.+++++++++ ..|.+|..|++.|.
T Consensus 237 ~~l~~~~~~~i~~li~si~~~d~~~Al~~l~~ll-~~Gedp~~i~r~l~ 284 (472)
T PRK14962 237 EALGLIPIEVVRDYINAIFNGDVKRVFTVLDDVY-YSGKDYEVLIQQAI 284 (472)
T ss_pred HHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999 89999999998875
No 10
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4e-38 Score=285.36 Aligned_cols=263 Identities=25% Similarity=0.376 Sum_probs=236.8
Q ss_pred CcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCc----------------
Q 021660 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ---------------- 102 (309)
Q Consensus 40 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~---------------- 102 (309)
...|.+||||.+|+++||++++++.|.+++..++.++ +||+||+|+|||++++.+++.++|.+
T Consensus 3 y~vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~ 82 (618)
T PRK14951 3 YLVLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQ 82 (618)
T ss_pred hHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccH
Confidence 4579999999999999999999999999999999888 79999999999999999999998742
Q ss_pred --------ccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceE
Q 021660 103 --------YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRF 174 (309)
Q Consensus 103 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~ 174 (309)
...++++++.....+.+.+++.+........ ..+.+|+||||+|.|+....+.|++.+++++..+.|
T Consensus 83 ~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~-----~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~f 157 (618)
T PRK14951 83 ACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPV-----QGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKF 157 (618)
T ss_pred HHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcc-----cCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEE
Confidence 2346778877766778888877765433222 125889999999999999999999999999999999
Q ss_pred EEEecCCcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCc
Q 021660 175 ALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQI 253 (309)
Q Consensus 175 i~~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~-~~i 253 (309)
|++|++..+++..+++||..++|.+++.+++..++++++.++|+.++++++..|++.++|++|.+++.++.+...+ +.|
T Consensus 158 IL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~lLdq~ia~~~~~I 237 (618)
T PRK14951 158 VLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGSGQL 237 (618)
T ss_pred EEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997665444 679
Q ss_pred CHHHHHhhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 254 TEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 254 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
+.+.|.++++......++++++++..++...++..+.++. ..|.++..|+..|.
T Consensus 238 t~~~V~~~Lg~~~~~~i~~LldaL~~~d~~~al~~l~~l~-~~G~~~~~il~~l~ 291 (618)
T PRK14951 238 QEAAVRQMLGSVDRSHVFRLIDALAQGDGRTVVETADELR-LNGLSAASTLEEMA 291 (618)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 89999999988764
No 11
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=7.5e-38 Score=282.78 Aligned_cols=261 Identities=23% Similarity=0.340 Sum_probs=235.2
Q ss_pred ChhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCc------------------
Q 021660 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ------------------ 102 (309)
Q Consensus 42 ~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~------------------ 102 (309)
.|.++|||.+|++++||+++++.|.+++..++.+| ++|+||+|+|||++++.+++.++|..
T Consensus 2 al~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~ 81 (584)
T PRK14952 2 ALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAP 81 (584)
T ss_pred cHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhc
Confidence 37799999999999999999999999999999999 79999999999999999999998642
Q ss_pred ---ccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021660 103 ---YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (309)
Q Consensus 103 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~ 179 (309)
...++++++.....+.+.+++........... ..++|+||||+|.++.+.++.|++.|++++..++||++++
T Consensus 82 ~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~-----~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tt 156 (584)
T PRK14952 82 NGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQ-----SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATT 156 (584)
T ss_pred ccCCCceEEEeccccccCHHHHHHHHHHHHhhhhc-----CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 23567778776666788877665544332211 2688999999999999999999999999999999999999
Q ss_pred CCcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--CCcCHHH
Q 021660 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS--QQITEEA 257 (309)
Q Consensus 180 ~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~--~~i~~~~ 257 (309)
...++.+++++||+.++|.+++.+++.+++.++++++|+.++++++..|++.++|++|.+++.|+.+..+. +.||.++
T Consensus 157 e~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~~~~~~~~It~~~ 236 (584)
T PRK14952 157 EPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYQR 236 (584)
T ss_pred ChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCCCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987764 6899999
Q ss_pred HHhhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 258 VYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 258 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
+..+++......++++++++..+|...++..+.+++ ..|.++.+|+..|.
T Consensus 237 v~~llg~~~~~~i~~lv~al~~~d~~~al~~l~~l~-~~g~d~~~~l~~L~ 286 (584)
T PRK14952 237 ALGLLGATDVALIDDAVDALAADDAAALFGAIESVI-DAGHDPRRFATDLL 286 (584)
T ss_pred HHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999 99999999888764
No 12
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=3.9e-38 Score=281.39 Aligned_cols=262 Identities=23% Similarity=0.357 Sum_probs=234.6
Q ss_pred CcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCc----------------
Q 021660 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ---------------- 102 (309)
Q Consensus 40 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~---------------- 102 (309)
..+|.+||||.+|+++|||+++++.|.+++..++.+| +||+||+|+|||++++.+++.++|.+
T Consensus 3 y~vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~ 82 (700)
T PRK12323 3 YQVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCR 82 (700)
T ss_pred chhHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccH
Confidence 4679999999999999999999999999999999988 79999999999999999999998732
Q ss_pred --------ccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceE
Q 021660 103 --------YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRF 174 (309)
Q Consensus 103 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~ 174 (309)
...++++++.....+++.+++.+........ ..+.+|+||||+|.|+....+.|++.||+++.++.|
T Consensus 83 sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~-----~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~F 157 (700)
T PRK12323 83 ACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPT-----AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKF 157 (700)
T ss_pred HHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchh-----cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceE
Confidence 1236778887777788888887776544321 126889999999999999999999999999999999
Q ss_pred EEEecCCcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhh-cCCc
Q 021660 175 ALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQI 253 (309)
Q Consensus 175 i~~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~-~~~i 253 (309)
|++|++..++.++++|||+.+.|.+++.+++.+++++++.++++.++++++..|++.++|++|.++++++.+... .+.+
T Consensus 158 ILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQaia~~~~~I 237 (700)
T PRK12323 158 ILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAYSAGNV 237 (700)
T ss_pred EEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999764443 3679
Q ss_pred CHHHHHhhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHh
Q 021660 254 TEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREV 307 (309)
Q Consensus 254 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l 307 (309)
+.+.|.++++......+.++++.+..++...++..+.++. +.|.++..++..|
T Consensus 238 t~~~V~~~LG~~d~~~i~~Ll~aL~~~d~~~~l~l~~~l~-~~G~d~~~~L~dL 290 (700)
T PRK12323 238 SEEAVRGMLGAIDQSYLVRLLDALAAEDGAALLAIADEMA-GRSLSFAGALQDL 290 (700)
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999998 9999987766655
No 13
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=7.1e-38 Score=280.34 Aligned_cols=261 Identities=17% Similarity=0.298 Sum_probs=233.5
Q ss_pred cChhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccC------------------
Q 021660 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGA------------------ 101 (309)
Q Consensus 41 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~------------------ 101 (309)
.+|+++|||.+|++++|++++++.|.+++.+++.++ ++|+||+|+|||++|+.+++.++|.
T Consensus 3 ~~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~ 82 (702)
T PRK14960 3 QVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVN 82 (702)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHh
Confidence 468999999999999999999999999999998877 7999999999999999999999763
Q ss_pred -cccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecC
Q 021660 102 -QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (309)
Q Consensus 102 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~ 180 (309)
+...++++++.....+.+.++..+........ ..+++|+||||+|.++....+.|++.+++++..+.||+++++
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~-----~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd 157 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPT-----QGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTD 157 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhhhh-----cCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECC
Confidence 23346788888766777888777665443221 125789999999999999999999999999999999999999
Q ss_pred CcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCcCHHHHH
Q 021660 181 VNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEAVY 259 (309)
Q Consensus 181 ~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~-~~i~~~~v~ 259 (309)
..+++..+++||..+.|.+++.+++.+++.++++++|+.++++++..|++.++|++|.+++.++.+..++ +.|+.++|.
T Consensus 158 ~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaIayg~g~IT~edV~ 237 (702)
T PRK14960 158 PQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVK 237 (702)
T ss_pred hHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999997765544 689999999
Q ss_pred hhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHh
Q 021660 260 LCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREV 307 (309)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l 307 (309)
.+++......++++++++..++...++..+.++. ..|.++..++..|
T Consensus 238 ~lLG~~d~e~IfdLldAI~k~d~~~al~~L~el~-~~g~d~~~~l~~L 284 (702)
T PRK14960 238 EMLGLIDRTIIYDLILAVHQNQREKVSQLLLQFR-YQALDVSLVLDQL 284 (702)
T ss_pred HHhccCCHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCCCHHHHHHHH
Confidence 9999999999999999999999999999999999 9999998776655
No 14
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.5e-37 Score=270.65 Aligned_cols=263 Identities=24% Similarity=0.337 Sum_probs=230.1
Q ss_pred CcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCc----------------
Q 021660 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ---------------- 102 (309)
Q Consensus 40 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~---------------- 102 (309)
..+|+++|||.+|++++||+++++.+.+.+..++.+| ++|+||+|+|||++|+.+++.+.|..
T Consensus 3 ~~~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~ 82 (363)
T PRK14961 3 YQILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEI 82 (363)
T ss_pred cHHHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 4579999999999999999999999999999988888 79999999999999999999997532
Q ss_pred ---ccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021660 103 ---YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (309)
Q Consensus 103 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~ 179 (309)
...++.+++.......+.+++.+......+ + ...++++||||+|.++...++.|++.+++++..+.+|++++
T Consensus 83 ~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p---~--~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~ 157 (363)
T PRK14961 83 EKGLCLDLIEIDAASRTKVEEMREILDNIYYSP---S--KSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATT 157 (363)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhcCc---c--cCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcC
Confidence 123455565544455566665554433221 1 12578999999999999889999999999999999999999
Q ss_pred CCcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCcCHHHH
Q 021660 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEAV 258 (309)
Q Consensus 180 ~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~-~~i~~~~v 258 (309)
....+.+++.+||..++|.+++.+++.+++..+++.+|+.+++++++.+++.++|++|.+++.++.+...+ +.|+.++|
T Consensus 158 ~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l~~~~~~~~~~It~~~v 237 (363)
T PRK14961 158 DVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKGNINIKNV 237 (363)
T ss_pred ChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999998876554 67999999
Q ss_pred HhhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
.++++......++++++++..++...++..+.+++ ..|.+|.+++..|.
T Consensus 238 ~~~l~~~~~~~i~~l~~ai~~~~~~~~~~~~~~l~-~~g~~~~~il~~l~ 286 (363)
T PRK14961 238 TDMLGLLNEKQSFLLTDALLKKDSKKTMLLLNKIS-SIGIEWENILIEML 286 (363)
T ss_pred HHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999 88999999988764
No 15
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.7e-37 Score=277.81 Aligned_cols=260 Identities=25% Similarity=0.396 Sum_probs=233.2
Q ss_pred hhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCc------------------c
Q 021660 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ------------------Y 103 (309)
Q Consensus 43 ~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~------------------~ 103 (309)
+.++|||.+|++++||++++..|.+++..++.++ ++|+||||+||||+++.+++.+.+.+ .
T Consensus 4 l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~ 83 (504)
T PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGA 83 (504)
T ss_pred HHHhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCC
Confidence 4599999999999999999999999999999888 59999999999999999999997642 3
Q ss_pred cccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcc
Q 021660 104 HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNK 183 (309)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 183 (309)
..++.+++.....+.+.+++........ + +. .+++++||||++.+....++.|++.+++++..+.+|++++...+
T Consensus 84 h~dv~el~~~~~~~vd~iR~l~~~~~~~-p--~~--~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~k 158 (504)
T PRK14963 84 HPDVLEIDAASNNSVEDVRDLREKVLLA-P--LR--GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEK 158 (504)
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhc-c--cc--CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhh
Confidence 4457777776666677776654433322 1 11 26889999999999999999999999999888999999998889
Q ss_pred cchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcCHHHHHhhhC
Q 021660 184 IIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTG 263 (309)
Q Consensus 184 l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~ 263 (309)
+.+.+.+||..+.|.+++.+++..++.++++++|+.+++++++.|++.++|++|.+++.|+++....+.||.++|..+++
T Consensus 159 l~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~~~~It~~~V~~~l~ 238 (504)
T PRK14963 159 MPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLALGTPVTRKQVEEALG 238 (504)
T ss_pred CChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999887767899999999999
Q ss_pred CCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 264 NPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
....+.++++++++..++...++..+++++ ..|.+|..|+..|.
T Consensus 239 ~~~~~~if~Li~al~~~d~~~Al~~l~~Ll-~~G~~~~~Il~~L~ 282 (504)
T PRK14963 239 LPPQERLRGIAAALAQGDAAEALSGAAQLY-RDGFAARTLVEGLL 282 (504)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHH
Confidence 999999999999999999999999999999 88999999998875
No 16
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.3e-37 Score=278.59 Aligned_cols=263 Identities=23% Similarity=0.375 Sum_probs=234.2
Q ss_pred CcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCcc---------------
Q 021660 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY--------------- 103 (309)
Q Consensus 40 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~--------------- 103 (309)
..+|.++|||.+|++++||+.+++.+.+++..++.++ ++|+||+|+|||++|+.+++.+.|.++
T Consensus 3 ~~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i 82 (605)
T PRK05896 3 EITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESI 82 (605)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 3579999999999999999999999999999888777 999999999999999999999987532
Q ss_pred ----cccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021660 104 ----HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (309)
Q Consensus 104 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~ 179 (309)
..++.+++.....+.+.++..+..+...+. . .++++++|||+|.+..+.++.|++.+++++..+++|++|+
T Consensus 83 ~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~---~--~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt 157 (605)
T PRK05896 83 NTNQSVDIVELDAASNNGVDEIRNIIDNINYLPT---T--FKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATT 157 (605)
T ss_pred HcCCCCceEEeccccccCHHHHHHHHHHHHhchh---h--CCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECC
Confidence 245667766555677777776655443222 1 2578999999999999999999999999999999999999
Q ss_pred CCcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-CcCHHHH
Q 021660 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQ-QITEEAV 258 (309)
Q Consensus 180 ~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~~-~i~~~~v 258 (309)
...++.+++++||+.++|.+++..++..++..++.++|+.+++++++.+++.++|++|.+++.|+.++.+.+ .|+.++|
T Consensus 158 ~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLekL~~y~~~~It~e~V 237 (605)
T PRK05896 158 EFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSEIDIEDI 237 (605)
T ss_pred ChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999877653 4999999
Q ss_pred HhhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
..+++......++.+++++..++...++..+++++ ..|.+|.+++..|.
T Consensus 238 ~ellg~~~~~~Vf~Ll~AI~~kd~~~al~~l~~Ll-~~ge~~~~il~~L~ 286 (605)
T PRK05896 238 NKTFGLVDNNKKINLIELIQKNDIEELRNLINELE-SKGINFEAFCRDLI 286 (605)
T ss_pred HHHhccCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCHHHHHHHHH
Confidence 99999888888999999999999999999999999 99999999988774
No 17
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.5e-37 Score=285.91 Aligned_cols=263 Identities=21% Similarity=0.330 Sum_probs=232.6
Q ss_pred CcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCcc---------------
Q 021660 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY--------------- 103 (309)
Q Consensus 40 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~--------------- 103 (309)
..+|.+||||.+|+++|||++++..|.+++..++.++ +||+||+|+|||++++.+++.++|...
T Consensus 3 Y~~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i 82 (944)
T PRK14949 3 YQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEI 82 (944)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHH
Confidence 3579999999999999999999999999999999998 699999999999999999999987521
Q ss_pred ----cccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021660 104 ----HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (309)
Q Consensus 104 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~ 179 (309)
...+++++.....+.+.++..+..+..... ..+++|+||||+|.|+.+.++.|++.|++++..++||++|+
T Consensus 83 ~~g~~~DviEidAas~~kVDdIReLie~v~~~P~-----~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTT 157 (944)
T PRK14949 83 AQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPS-----RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATT 157 (944)
T ss_pred hcCCCceEEEeccccccCHHHHHHHHHHHHhhhh-----cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECC
Confidence 234566666545667777776665533221 12678999999999999999999999999999999999999
Q ss_pred CCcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhh-cCCcCHHHH
Q 021660 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEEAV 258 (309)
Q Consensus 180 ~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~-~~~i~~~~v 258 (309)
...++.+.+++||.++.|.+++.+++..+|++++..+++.++++++..|++.++|++|.++++|+.+... .+.++.+.|
T Consensus 158 e~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLLdQala~~~~~It~~~V 237 (944)
T PRK14949 158 DPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAFGGGQVMLTQV 237 (944)
T ss_pred CchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999765543 367999999
Q ss_pred HhhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
..+++......+..+++++.+++...++.++++++ ..|.++..|+..|.
T Consensus 238 ~~llG~iD~~~V~~llksI~~~D~~aaL~~l~~Ll-~~G~D~~~ILr~Ll 286 (944)
T PRK14949 238 QTMLGSIDEQHVIALLKALTDADIGVLMQTCAQVL-AFGADAQEVLRSLL 286 (944)
T ss_pred HHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHH
Confidence 99999888888999999999999999999999999 99999999998874
No 18
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=2.5e-37 Score=280.93 Aligned_cols=268 Identities=24% Similarity=0.372 Sum_probs=238.7
Q ss_pred CCCCCCcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCcc----------
Q 021660 35 PPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY---------- 103 (309)
Q Consensus 35 ~~~~~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~---------- 103 (309)
+.....++|.++|||.+|++++||+.+++.|.+++..++.++ ++|+||+|+|||++++.+++.+.|.+.
T Consensus 6 ~~~~~y~~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~ 85 (598)
T PRK09111 6 AAATPYRVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL 85 (598)
T ss_pred CCCccchhHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc
Confidence 344456789999999999999999999999999999998887 999999999999999999999987532
Q ss_pred --------------cccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 021660 104 --------------HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT 169 (309)
Q Consensus 104 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~ 169 (309)
..++++++.....+.+.+++.+...... +. . .+++|+||||+|.++....+.|+++|++++
T Consensus 86 cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~-P~--~--a~~KVvIIDEad~Ls~~a~naLLKtLEePp 160 (598)
T PRK09111 86 CGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYR-PV--S--ARYKVYIIDEVHMLSTAAFNALLKTLEEPP 160 (598)
T ss_pred CcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhc-hh--c--CCcEEEEEEChHhCCHHHHHHHHHHHHhCC
Confidence 2356677766667788888766654332 21 1 268999999999999999999999999999
Q ss_pred CCceEEEEecCCcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 021660 170 KNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA 249 (309)
Q Consensus 170 ~~~~~i~~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~ 249 (309)
..++||++++..+++.+.+++||+.++|.+++.+++..|+.++++++|+.+++++++.|++.++|++|.+++.|+++...
T Consensus 161 ~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~Ldkli~~ 240 (598)
T PRK09111 161 PHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIAH 240 (598)
T ss_pred CCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999877654
Q ss_pred c-CCcCHHHHHhhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 250 S-QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 250 ~-~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
+ +.||.++|+.+++......++++++++..++...++..+.+++ ..|.+|..++..|.
T Consensus 241 g~g~It~e~V~~llg~~~~~~if~L~~ai~~gd~~~Al~~l~~l~-~~G~~p~~il~~L~ 299 (598)
T PRK09111 241 GAGEVTAEAVRDMLGLADRARVIDLFEALMRGDVAAALAEFRAQY-DAGADPVVVLTDLA 299 (598)
T ss_pred cCCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHH
Confidence 4 5799999999999999999999999999999999999999999 99999999988764
No 19
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.6e-37 Score=280.64 Aligned_cols=263 Identities=24% Similarity=0.379 Sum_probs=234.9
Q ss_pred CcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCc----------------
Q 021660 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ---------------- 102 (309)
Q Consensus 40 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~---------------- 102 (309)
..+|.+||||.+|++++|++++++.|.+++..++.++ +||+||+|+|||++++.+++.++|..
T Consensus 3 y~vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i 82 (709)
T PRK08691 3 YQVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQI 82 (709)
T ss_pred chhHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHH
Confidence 4579999999999999999999999999999998887 89999999999999999999997752
Q ss_pred ---ccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021660 103 ---YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (309)
Q Consensus 103 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~ 179 (309)
...++++++.....+.+.++..+........ + .+++|+||||+|.++....+.|++.|++++..+.||++++
T Consensus 83 ~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~--~---gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTt 157 (709)
T PRK08691 83 DAGRYVDLLEIDAASNTGIDNIREVLENAQYAPT--A---GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATT 157 (709)
T ss_pred hccCccceEEEeccccCCHHHHHHHHHHHHhhhh--h---CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 1235667777666777777776665432211 1 2578999999999999999999999999999999999999
Q ss_pred CCcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCcCHHHH
Q 021660 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEAV 258 (309)
Q Consensus 180 ~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~-~~i~~~~v 258 (309)
+..++...+++||..+.|.+++.+++..+|.+++.++|+.++++++..|++.++|++|.+++.|+.+..++ +.|+.++|
T Consensus 158 d~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia~g~g~It~e~V 237 (709)
T PRK08691 158 DPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDV 237 (709)
T ss_pred CccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998776644 67999999
Q ss_pred HhhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
..+++......++++++++..++...++..+++++ ..|.++..++..|.
T Consensus 238 ~~lLG~~d~~~If~LldAL~~~d~~~al~~l~~L~-~~G~d~~~~l~~L~ 286 (709)
T PRK08691 238 RQMIGAVDKQYLYELLTGIINQDGAALLAKAQEMA-ACAVGFDNALGELA 286 (709)
T ss_pred HHHHcccCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999 99999999988764
No 20
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=100.00 E-value=9.1e-37 Score=263.71 Aligned_cols=266 Identities=45% Similarity=0.795 Sum_probs=237.6
Q ss_pred CCcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcch
Q 021660 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 118 (309)
Q Consensus 39 ~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 118 (309)
++.+|.++|+|.++++++|+++++..+..++..+..++++|+||+|+|||++++.+++++.+.++...++.++.....+.
T Consensus 3 ~~~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~ 82 (319)
T PRK00440 3 MEEIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGI 82 (319)
T ss_pred ccCccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccch
Confidence 46789999999999999999999999999999988888999999999999999999999987777777788876665555
Q ss_pred HHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEec
Q 021660 119 DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFA 198 (309)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~l~~r~~~i~~~ 198 (309)
..+...+..+....+. .. ..+++|+|||++.+..+.++.|..+++.++..+.+|++++...++.+.+.+|+..++|.
T Consensus 83 ~~~~~~i~~~~~~~~~-~~--~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~ 159 (319)
T PRK00440 83 DVIRNKIKEFARTAPV-GG--APFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFS 159 (319)
T ss_pred HHHHHHHHHHHhcCCC-CC--CCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeC
Confidence 5555556555544332 11 24789999999999988889999999998888999999998888899999999999999
Q ss_pred CCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcCHHHHHhhhCCCChHHHHHHHHHHh
Q 021660 199 PLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLL 278 (309)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~ 278 (309)
+++.+++..+++.++++.|+.+++++++.+++.++||+|.+++.|+.++..++.||.++|..++.......++++++++.
T Consensus 160 ~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~~~~it~~~v~~~~~~~~~~~i~~l~~~~~ 239 (319)
T PRK00440 160 PLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAATGKEVTEEAVYKITGTARPEEIREMIELAL 239 (319)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988877899999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCHHHHHHHh
Q 021660 279 NESFADSFKRISEMKMRKGLALVDIVREV 307 (309)
Q Consensus 279 ~~~~~~~~~~l~~~~~~~g~~~~~~~~~l 307 (309)
.++...++..+.+++...|.++.+|+..+
T Consensus 240 ~~~~~~a~~~l~~ll~~~g~~~~~i~~~l 268 (319)
T PRK00440 240 NGDFTEAREKLRDLMIDYGLSGEDIIKQI 268 (319)
T ss_pred cCCHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999966899999988765
No 21
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=7.4e-37 Score=272.44 Aligned_cols=260 Identities=28% Similarity=0.418 Sum_probs=232.0
Q ss_pred cChhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCc-----------------
Q 021660 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ----------------- 102 (309)
Q Consensus 41 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~----------------- 102 (309)
..|.++|||.+|++++||+++++.+..++..++.++ +||+||+|+|||++++.+++.+.+..
T Consensus 2 ~~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~ 81 (535)
T PRK08451 2 QALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSAL 81 (535)
T ss_pred ccHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 569999999999999999999999999999999888 79999999999999999999997642
Q ss_pred --ccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecC
Q 021660 103 --YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (309)
Q Consensus 103 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~ 180 (309)
.+..+.+++.....+.+.+++.+......+. ...++|+||||+|.++.+.++.|++.++++++.+.||+++++
T Consensus 82 ~~~h~dv~eldaas~~gId~IRelie~~~~~P~-----~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd 156 (535)
T PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYKPS-----MARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTD 156 (535)
T ss_pred hcCCCeEEEeccccccCHHHHHHHHHHHhhCcc-----cCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECC
Confidence 3456777777666677888877765432211 126899999999999999999999999999999999999999
Q ss_pred CcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCcCHHHHH
Q 021660 181 VNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEAVY 259 (309)
Q Consensus 181 ~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~-~~i~~~~v~ 259 (309)
..++++++.+||..++|.+++.+++..++.+++.++|+.++++++..|++.++|++|.+++.|+.+..++ +.||.+.|.
T Consensus 157 ~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnlLdqai~~~~~~It~~~V~ 236 (535)
T PRK08451 157 PLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCKNAITESKVA 236 (535)
T ss_pred hhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999998877665 679999999
Q ss_pred hhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 260 LCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
.+++......++++++++..++...++..+.++. |.++.+++..|.
T Consensus 237 ~~lg~~~~~~I~~li~ai~~~d~~~a~~~l~~L~---g~~~~~~l~~l~ 282 (535)
T PRK08451 237 DMLGLLDPSKLEDFFQAILNQDKEKLFELLKELE---DYEAEMVLDEMM 282 (535)
T ss_pred HHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHH---CCCHHHHHHHHH
Confidence 9999999999999999999999999999999986 788887776653
No 22
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=8.8e-37 Score=272.43 Aligned_cols=263 Identities=26% Similarity=0.417 Sum_probs=232.1
Q ss_pred CcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCc----------------
Q 021660 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ---------------- 102 (309)
Q Consensus 40 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~---------------- 102 (309)
..+|+++|||.+|.+++|++.++..+.+++..++.++ ++|+||+|+|||++++.+++.+.|..
T Consensus 3 y~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i 82 (486)
T PRK14953 3 YIPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEI 82 (486)
T ss_pred chHHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHH
Confidence 4589999999999999999999999999999998888 78999999999999999999997521
Q ss_pred ---ccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021660 103 ---YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (309)
Q Consensus 103 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~ 179 (309)
...++.+++.....+.+.++........ .+. ...++|+||||+|.++.+..+.|++.++++++.+++|++++
T Consensus 83 ~~g~~~d~~eidaas~~gvd~ir~I~~~~~~-~P~----~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt 157 (486)
T PRK14953 83 DKGSFPDLIEIDAASNRGIDDIRALRDAVSY-TPI----KGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTT 157 (486)
T ss_pred hcCCCCcEEEEeCccCCCHHHHHHHHHHHHh-Ccc----cCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 1234566666555666666654443332 221 12688999999999999999999999999999999999999
Q ss_pred CCcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCcCHHHH
Q 021660 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEAV 258 (309)
Q Consensus 180 ~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~-~~i~~~~v 258 (309)
....+++++.+||..+.|.+++.+++..|+..+++++|+.+++++++.+++.++|++|.+++.|+.+..++ +.+|.++|
T Consensus 158 ~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~Ldkl~~~~~~~It~~~V 237 (486)
T PRK14953 158 EYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGKVTIKVV 237 (486)
T ss_pred CHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999886554 57999999
Q ss_pred HhhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
..+++......++++++++..++...++..+.+++ ..|.++..++..|.
T Consensus 238 ~~~lg~~~~~~vf~Li~ai~~~d~~~al~~l~~L~-~~g~~~~~iL~~L~ 286 (486)
T PRK14953 238 EEFLGIVSQESVRKFLNLLLESDVDEAIKFLRTLE-EKGYNLNKFWKQLE 286 (486)
T ss_pred HHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999 99999999998775
No 23
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4.3e-37 Score=280.72 Aligned_cols=262 Identities=22% Similarity=0.393 Sum_probs=235.6
Q ss_pred cChhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCc-----------------
Q 021660 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ----------------- 102 (309)
Q Consensus 41 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~----------------- 102 (309)
..|+++|||.+|++++|++++++.|.+++..++.++ +||+||+|+|||++++.+++.+.|..
T Consensus 4 ~~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~ 83 (576)
T PRK14965 4 LVLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEIT 83 (576)
T ss_pred HHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHh
Confidence 458899999999999999999999999999998888 79999999999999999999998753
Q ss_pred --ccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecC
Q 021660 103 --YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (309)
Q Consensus 103 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~ 180 (309)
...++++++.....+.+.++..+......+. ..+++|+||||+|.++....+.|+++|++++.+++||++|+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~-----~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~ 158 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPS-----RSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTE 158 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccc-----cCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCC
Confidence 1445777877666777787776655433221 126899999999999999999999999999999999999999
Q ss_pred CcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCcCHHHHH
Q 021660 181 VNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEAVY 259 (309)
Q Consensus 181 ~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~-~~i~~~~v~ 259 (309)
..++++++++||..++|.+++.+++..++..+++++|+.++++++..+++.++|++|.+++.|+++..+. +.|+.+++.
T Consensus 159 ~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldqliay~g~~It~edV~ 238 (576)
T PRK14965 159 PHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDVA 238 (576)
T ss_pred hhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998877654 679999999
Q ss_pred hhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 260 LCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
.+++......++++++++..++...++..+.+++ ..|.++..++..|.
T Consensus 239 ~llG~~~~~~l~~ll~al~~~d~~~al~~l~~l~-~~G~~~~~~l~~Ll 286 (576)
T PRK14965 239 ELLGVVDRRLLLDISAAVFGRDTRALLEIVERVD-EFGYNMRQFCQELI 286 (576)
T ss_pred HHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999 99999999887764
No 24
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=7.5e-37 Score=286.02 Aligned_cols=261 Identities=22% Similarity=0.340 Sum_probs=233.3
Q ss_pred ChhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCc------------------
Q 021660 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ------------------ 102 (309)
Q Consensus 42 ~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~------------------ 102 (309)
.|.+||||.+|+++|||+++++.|.+++..++.+| +||+||+|||||++++.+++.++|..
T Consensus 4 ~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~ 83 (824)
T PRK07764 4 ALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAP 83 (824)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHc
Confidence 47899999999999999999999999999999888 89999999999999999999998742
Q ss_pred ---ccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021660 103 ---YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (309)
Q Consensus 103 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~ 179 (309)
...++++++.....+++.++.......... . ...++|+||||+|.|+...++.|+++|++++.+++||++++
T Consensus 84 g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p---~--~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt 158 (824)
T PRK07764 84 GGPGSLDVTEIDAASHGGVDDARELRERAFFAP---A--ESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATT 158 (824)
T ss_pred CCCCCCcEEEecccccCCHHHHHHHHHHHHhch---h--cCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 235577777766667788877554433221 1 12689999999999999999999999999999999999999
Q ss_pred CCcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--CCcCHHH
Q 021660 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS--QQITEEA 257 (309)
Q Consensus 180 ~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~--~~i~~~~ 257 (309)
..+++.+.|++||+.+.|.+++.+++.+||.++++.+|+.++++++..|++.++|++|.+++.|+++..+. +.||.++
T Consensus 159 ~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKLia~~~~~~IT~e~ 238 (824)
T PRK07764 159 EPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLAGAGPEGVTYER 238 (824)
T ss_pred ChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988653 5799999
Q ss_pred HHhhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 258 VYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 258 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
+..+++......++++++++..+|...++..+.+++ ..|+++..|+..|.
T Consensus 239 V~allg~~~~~~I~~lidAL~~~D~a~al~~l~~Li-~~G~dp~~~L~~LL 288 (824)
T PRK07764 239 AVALLGVTDSALIDEAVDALAAGDGAALFGTVDRVI-EAGHDPRRFAEDLL 288 (824)
T ss_pred HHHHhcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999 89999988876654
No 25
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.4e-36 Score=269.76 Aligned_cols=263 Identities=21% Similarity=0.369 Sum_probs=231.6
Q ss_pred CcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCc----------------
Q 021660 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ---------------- 102 (309)
Q Consensus 40 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~---------------- 102 (309)
..+|+++|||.+|++++|++.++..+.+++..++.++ ++|+||+|+|||++|+.+++.+.+..
T Consensus 4 ~~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~ 83 (451)
T PRK06305 4 YQVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKE 83 (451)
T ss_pred hHHHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHH
Confidence 4679999999999999999999999999999988877 89999999999999999999997642
Q ss_pred ----ccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEe
Q 021660 103 ----YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC 178 (309)
Q Consensus 103 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~ 178 (309)
....+..++.....+.+.++.......... ....++++||||++.+..+..+.|++++++++..+.+|+++
T Consensus 84 i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~-----~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t 158 (451)
T PRK06305 84 ISSGTSLDVLEIDGASHRGIEDIRQINETVLFTP-----SKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLAT 158 (451)
T ss_pred HhcCCCCceEEeeccccCCHHHHHHHHHHHHhhh-----hcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEe
Confidence 234566776655556666665444332211 11268999999999999999999999999999899999999
Q ss_pred cCCcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhh-cCCcCHHH
Q 021660 179 NQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEEA 257 (309)
Q Consensus 179 ~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~-~~~i~~~~ 257 (309)
+...++.+.+++||..++|.+++.+++..|+...++++|+.+++++++.|+++++||+|.+++.++++..+ .+.|+.++
T Consensus 159 ~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Lekl~~~~~~~It~~~ 238 (451)
T PRK06305 159 TEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPKSLDPDS 238 (451)
T ss_pred CChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHH
Confidence 98899999999999999999999999999999999999999999999999999999999999999988754 35699999
Q ss_pred HHhhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 258 VYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 258 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
|..+++....+.++++++++..++...++.++.+++ ..|.+|..|+..|.
T Consensus 239 V~~l~~~~~~~~vf~L~~ai~~~d~~~al~~l~~L~-~~g~~~~~iL~~L~ 288 (451)
T PRK06305 239 VAKALGLLSQDSLYTLDEAITTQNYAQALEPVTDAM-NSGVAPAHFLHDLT 288 (451)
T ss_pred HHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCcCHHHHHHHHH
Confidence 999999999999999999999999999999999999 88999999987764
No 26
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2e-36 Score=271.10 Aligned_cols=263 Identities=19% Similarity=0.325 Sum_probs=232.4
Q ss_pred CcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCc----------------
Q 021660 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ---------------- 102 (309)
Q Consensus 40 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~---------------- 102 (309)
..+|+++|||.+|++++|++++++.+.+++..++.++ ++|+||+|+|||++|+.+++.+.|..
T Consensus 3 y~~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i 82 (546)
T PRK14957 3 YQALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAI 82 (546)
T ss_pred chhHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Confidence 4679999999999999999999999999999988888 89999999999999999999997632
Q ss_pred ---ccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021660 103 ---YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (309)
Q Consensus 103 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~ 179 (309)
....+++++.....+.+.++..+..+..... . .+++|+||||+|.++...++.|++.+++++..+.||++|+
T Consensus 83 ~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~---~--g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Tt 157 (546)
T PRK14957 83 NNNSFIDLIEIDAASRTGVEETKEILDNIQYMPS---Q--GRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATT 157 (546)
T ss_pred hcCCCCceEEeecccccCHHHHHHHHHHHHhhhh---c--CCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEEC
Confidence 1245666666555667777766655433221 1 2678999999999999999999999999999999999999
Q ss_pred CCcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhh-cCCcCHHHH
Q 021660 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEEAV 258 (309)
Q Consensus 180 ~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~-~~~i~~~~v 258 (309)
+..++.+++.+||..++|.+++.+++..++.++++++|+.++++++..|++.++||+|.+++.|+.+..+ ++.|+.+++
T Consensus 158 d~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i~~~~~~It~~~V 237 (546)
T PRK14957 158 DYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGELKQAQI 237 (546)
T ss_pred ChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHH
Confidence 9989998999999999999999999999999999999999999999999999999999999999987755 368999999
Q ss_pred HhhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
+++++....+.++++++++..++...++..++++. ..|.+..+++..|.
T Consensus 238 ~~~l~~~~~~~v~~ll~Al~~~d~~~~l~~~~~l~-~~~~~~~~~l~~l~ 286 (546)
T PRK14957 238 KQMLGIIDSEEVYSIINAIIDNDPKAILPAIKNLA-LTESSADAVLDRIA 286 (546)
T ss_pred HHHHccCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCHHHHHHHHH
Confidence 99999988888999999999999999999999999 98999988887663
No 27
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.7e-36 Score=275.26 Aligned_cols=262 Identities=21% Similarity=0.359 Sum_probs=232.0
Q ss_pred CcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCc----------------
Q 021660 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ---------------- 102 (309)
Q Consensus 40 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~---------------- 102 (309)
..+|.++|||.+|+++|||+++++.|.+.+..++.++ ++|+||+|+|||++++.+++.++|..
T Consensus 3 y~~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i 82 (647)
T PRK07994 3 YQVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREI 82 (647)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHH
Confidence 4679999999999999999999999999999999888 79999999999999999999998742
Q ss_pred ---ccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021660 103 ---YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (309)
Q Consensus 103 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~ 179 (309)
...++++++.....+.+.++..+..+..... ..+++|+||||+|.|+...++.|++.|++++.++.||++|+
T Consensus 83 ~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~-----~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt 157 (647)
T PRK07994 83 EQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPA-----RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 157 (647)
T ss_pred HcCCCCCceeecccccCCHHHHHHHHHHHHhhhh-----cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecC
Confidence 2235677777655677777776665443221 12688999999999999999999999999999999999999
Q ss_pred CCcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhh-cCCcCHHHH
Q 021660 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEEAV 258 (309)
Q Consensus 180 ~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~-~~~i~~~~v 258 (309)
+..++++.+++||..+.|.+++.+++..+|.+++..+++.++++++..|++.++|++|.++++++.+... .+.|+.+++
T Consensus 158 ~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lldqaia~~~~~it~~~v 237 (647)
T PRK07994 158 DPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIASGNGQVTTDDV 237 (647)
T ss_pred CccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999765544 467999999
Q ss_pred HhhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHh
Q 021660 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREV 307 (309)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l 307 (309)
..+++....+.+.++++++..++...++.++.+++ ..|.++..++..|
T Consensus 238 ~~~lg~~d~~~~~~ll~al~~~d~~~~l~~~~~l~-~~g~d~~~~L~~l 285 (647)
T PRK07994 238 SAMLGTLDDDQALSLLEALVEGDGERVMALINQLA-ERGPDWEGLLVEL 285 (647)
T ss_pred HHHHccCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCHHHHHHHH
Confidence 99999887788999999999999999999999998 9999998777655
No 28
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=2.2e-36 Score=275.76 Aligned_cols=263 Identities=25% Similarity=0.421 Sum_probs=233.0
Q ss_pred CcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCcc---------------
Q 021660 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY--------------- 103 (309)
Q Consensus 40 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~--------------- 103 (309)
..+|+++|||..|++++||+.+++.+.+++..++.++ +||+||+|+|||++|+.+++.+.|...
T Consensus 5 y~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~ 84 (725)
T PRK07133 5 YKALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVN 84 (725)
T ss_pred hhhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhc
Confidence 4579999999999999999999999999999998888 799999999999999999999987432
Q ss_pred -cccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCc
Q 021660 104 -HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVN 182 (309)
Q Consensus 104 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 182 (309)
...+++++.....+.+.++..+..+...+.. ..++|+||||+|.+....++.|++.|++++..+++|++|+...
T Consensus 85 ~~~Dvieidaasn~~vd~IReLie~~~~~P~~-----g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~ 159 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDEIRELIENVKNLPTQ-----SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVH 159 (725)
T ss_pred CCCcEEEEeccccCCHHHHHHHHHHHHhchhc-----CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChh
Confidence 2345556654445667777766554433221 2688999999999999999999999999999999999999999
Q ss_pred ccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCcCHHHHHhh
Q 021660 183 KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEAVYLC 261 (309)
Q Consensus 183 ~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~-~~i~~~~v~~~ 261 (309)
++++++++||+++.|.+++.+++..++..++.++|+.++++++..+++.++|++|.+++.++.++.++ +.|+.+.+..+
T Consensus 160 KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLekl~~y~~~~It~e~V~el 239 (725)
T PRK07133 160 KIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKITLKNVEEL 239 (725)
T ss_pred hhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999877554 56999999999
Q ss_pred hCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 262 TGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
++......++.+++++..++...++..+.+++ ..|.+|..++..|.
T Consensus 240 lg~~~~e~If~Ll~aI~~kd~~~aL~~l~~L~-~~ged~~~iL~~Ll 285 (725)
T PRK07133 240 FGLVSNENLINLLNLLYSKDIKEVLNILNQIK-EQGIDPELLLISLI 285 (725)
T ss_pred HcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHH
Confidence 99999999999999999999999999999999 99999999888764
No 29
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=2.5e-36 Score=274.53 Aligned_cols=262 Identities=25% Similarity=0.425 Sum_probs=235.9
Q ss_pred cChhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCc-----------------
Q 021660 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ----------------- 102 (309)
Q Consensus 41 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~----------------- 102 (309)
..|+++|||.+|++++||+++.+.+.+++..++.++ +||+||+|+|||++++.+++.+.|..
T Consensus 4 ~al~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~ 83 (559)
T PRK05563 4 QALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAIT 83 (559)
T ss_pred HHHHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHh
Confidence 458899999999999999999999999999998888 89999999999999999999998653
Q ss_pred --ccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecC
Q 021660 103 --YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (309)
Q Consensus 103 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~ 180 (309)
...++++++.....+.+.++..+......+. ...++|+||||+|.++....+.|++.+++++.+++||++|+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~-----~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~ 158 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPS-----EAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTE 158 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcc-----cCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCC
Confidence 2457788888776777777776665443221 226899999999999999999999999999999999999999
Q ss_pred CcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCcCHHHHH
Q 021660 181 VNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEAVY 259 (309)
Q Consensus 181 ~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~-~~i~~~~v~ 259 (309)
..++++++.+||+.+.|.+++.+++..++..+++++|+.+++++++.+++.++|++|.+++.|+.+..++ +.|+.++|.
T Consensus 159 ~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al~~Ldq~~~~~~~~It~~~V~ 238 (559)
T PRK05563 159 PHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDGKVTYEDAL 238 (559)
T ss_pred hhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998776553 679999999
Q ss_pred hhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 260 LCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
.+++......++++++++..+|...++..+.+++ ..|.++..++..|.
T Consensus 239 ~vlg~~~~~~i~~l~~al~~~d~~~al~~l~~l~-~~g~d~~~~l~~L~ 286 (559)
T PRK05563 239 EVTGSVSQEALDDLVDAIVEGDVAKALKILEELL-DEGKDPNRFIEDLI 286 (559)
T ss_pred HHhCCCCHHHHHHHHHHHHccCHHHHHHHHHHHH-HcCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999 99999999887764
No 30
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.3e-36 Score=267.57 Aligned_cols=263 Identities=22% Similarity=0.307 Sum_probs=231.8
Q ss_pred CcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCcc---------------
Q 021660 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY--------------- 103 (309)
Q Consensus 40 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~--------------- 103 (309)
...++++|||.+|++++||+.+++.|.+++.+++.++ ++|+||+|+|||++|+.+++.+.|+..
T Consensus 3 ~~~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~ 82 (397)
T PRK14955 3 YQVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCG 82 (397)
T ss_pred cHHHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCC
Confidence 3457899999999999999999999999999999888 999999999999999999999987421
Q ss_pred ------------cccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 021660 104 ------------HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKN 171 (309)
Q Consensus 104 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~ 171 (309)
..++..++.....+.+.+++....+...+. + ..++++||||+|.+..+.++.|+++++++++.
T Consensus 83 ~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~--~---~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~ 157 (397)
T PRK14955 83 ECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQ--K---GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPH 157 (397)
T ss_pred CCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchh--c---CCeEEEEEeChhhCCHHHHHHHHHHHhcCCCC
Confidence 234566665555556777765555532221 1 26789999999999998999999999999999
Q ss_pred ceEEEEecCCcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-
Q 021660 172 TRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS- 250 (309)
Q Consensus 172 ~~~i~~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~- 250 (309)
+++|++++...++.+++.+||..++|.+++.+++..|+...++++|+.+++++++.+++.++|++|.+++.|+++..+.
T Consensus 158 t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L~kl~~~~~ 237 (397)
T PRK14955 158 AIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAFSV 237 (397)
T ss_pred eEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Confidence 9999999888899999999999999999999999999999999999999999999999999999999999999887652
Q ss_pred -----CCcCHHHHHhhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 251 -----QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 251 -----~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
+.|+.++|..++.....++++++++++..++...++..+.+++ ..|.+|..|+..|.
T Consensus 238 ~~~~~~~It~~~v~~~v~~~~~~~vf~l~~ai~~~~~~~al~~~~~l~-~~~~~~~~iL~ll~ 299 (397)
T PRK14955 238 ESEGEGSIRYDKVAELLNYIDDEHFFAVTDAVADGDAVAMLDVAQFVI-RNGYDEQDFLEKLI 299 (397)
T ss_pred ccCCCCccCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999 89999999887764
No 31
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=3.3e-36 Score=271.05 Aligned_cols=264 Identities=22% Similarity=0.371 Sum_probs=230.0
Q ss_pred CCcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCc---------------
Q 021660 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ--------------- 102 (309)
Q Consensus 39 ~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~--------------- 102 (309)
+..+|+++|||.+|++++|++.+++.|.+++..++.++ +||+||+|+|||++|+.+++.+.|..
T Consensus 2 s~~~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~ 81 (624)
T PRK14959 2 SHASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRK 81 (624)
T ss_pred CcchHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHH
Confidence 34689999999999999999999999999999987544 99999999999999999999998742
Q ss_pred ----ccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEe
Q 021660 103 ----YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC 178 (309)
Q Consensus 103 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~ 178 (309)
...++.+++.....+.+.++.....+... + + ...++||||||+|.+..+.++.|++.+++++..+++|++|
T Consensus 82 i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~-p--~--~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaT 156 (624)
T PRK14959 82 VTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYA-P--M--EGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLAT 156 (624)
T ss_pred HhcCCCCceEEEecccccCHHHHHHHHHHHHhh-h--h--cCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEec
Confidence 23457777765556667666544333322 1 1 1257899999999999999999999999998899999999
Q ss_pred cCCcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCcCHHH
Q 021660 179 NQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEA 257 (309)
Q Consensus 179 ~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~-~~i~~~~ 257 (309)
+...++.+.+++||..++|.+++.+++..+|...+.++++.+++++++.|++.++|++|.+++.|+.+...+ +.|+.++
T Consensus 157 t~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll~~g~~~It~d~ 236 (624)
T PRK14959 157 TEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDG 236 (624)
T ss_pred CChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998765433 5799999
Q ss_pred HHhhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 258 VYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 258 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
|..+++....+.++++++++...+...++..+.+++ +.|.++..++..|.
T Consensus 237 V~~~lg~~~~e~vfeLl~AL~~~D~~aal~~l~~Ll-~~g~d~~~iL~~Ll 286 (624)
T PRK14959 237 ARGVLGLAGQELFLRLMEALAAQDCLGVANVVRELL-DRGVDMGFFLRELV 286 (624)
T ss_pred HHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999 89999988877664
No 32
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.2e-37 Score=270.59 Aligned_cols=262 Identities=25% Similarity=0.422 Sum_probs=243.4
Q ss_pred cChhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCc-----------------
Q 021660 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ----------------- 102 (309)
Q Consensus 41 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~----------------- 102 (309)
..++.+|||..|++++||+.+.+.|.+.+..++..| ++|+||.|+||||+++.+|+.++|..
T Consensus 4 q~L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 4 QVLARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEIN 83 (515)
T ss_pred HHHHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhh
Confidence 457899999999999999999999999999999888 99999999999999999999998863
Q ss_pred --ccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecC
Q 021660 103 --YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (309)
Q Consensus 103 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~ 180 (309)
..+++++++...+.+++.++..+.+....+.. .+++|.||||+|.++....+.|++.++++|.++.||++|++
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~-----~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe 158 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSE-----GRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTE 158 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCcc-----ccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCC
Confidence 34678888888888999998887776544332 37899999999999999999999999999999999999999
Q ss_pred CcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCcCHHHHH
Q 021660 181 VNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEAVY 259 (309)
Q Consensus 181 ~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~-~~i~~~~v~ 259 (309)
..+++.++++||+.++|..++.+++...|..++.++++.++++++..|++.++|.+|.++.+|+.+...+ +.||.+.++
T Consensus 159 ~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~~~It~~~v~ 238 (515)
T COG2812 159 PQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGEGEITLESVR 238 (515)
T ss_pred cCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHccCCcccHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998887665 689999999
Q ss_pred hhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 260 LCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
.+++......+..+++++..+|...++..+++++ ..|.++..++..|.
T Consensus 239 ~~lG~~~~~~~~~~~~~i~~~d~~~~~~~~~~l~-~~G~~~~~~l~dl~ 286 (515)
T COG2812 239 DMLGLTDIEKLLSLLEAILKGDAKEALRLINELI-EEGKDPEAFLEDLL 286 (515)
T ss_pred HHhCCCCHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCcCHHHHHHHHH
Confidence 9999999999999999999999999999999999 99999999887764
No 33
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=5.7e-36 Score=272.33 Aligned_cols=262 Identities=21% Similarity=0.319 Sum_probs=233.6
Q ss_pred cChhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCc-----------------
Q 021660 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ----------------- 102 (309)
Q Consensus 41 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~----------------- 102 (309)
..++++|||.+|++++||+.+++.|.+++.+++.++ ++|+||+|+|||++|+.+++.+.|..
T Consensus 4 ~~l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~ 83 (620)
T PRK14954 4 QVIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGE 83 (620)
T ss_pred HHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCcc
Confidence 357899999999999999999999999999998888 99999999999999999999998742
Q ss_pred ----------ccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCc
Q 021660 103 ----------YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNT 172 (309)
Q Consensus 103 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~ 172 (309)
...++..++.....+.+.++..+..+...+. . .+++|+||||+|.+.....+.|+++|++++..+
T Consensus 84 C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~---~--~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~t 158 (620)
T PRK14954 84 CESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQ---K--GRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHA 158 (620)
T ss_pred CHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhh---c--CCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCe
Confidence 1235666665555567777776655543221 1 268999999999999999999999999999999
Q ss_pred eEEEEecCCcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--
Q 021660 173 RFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-- 250 (309)
Q Consensus 173 ~~i~~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~-- 250 (309)
++|++++...++.+++.+||..++|.+++.+++..|+.++++.+|+.+++++++.|++.++|++|.+++.++++..+.
T Consensus 159 v~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLeKL~~y~~~ 238 (620)
T PRK14954 159 IFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAFSVG 238 (620)
T ss_pred EEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhccc
Confidence 999999888999999999999999999999999999999999999999999999999999999999999999888764
Q ss_pred ----CCcCHHHHHhhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 251 ----QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 251 ----~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
+.|+.++|.+++.....+.++++++++..++...++..+.+++ ..|.+|..|+..|.
T Consensus 239 ~~~~~~It~~~V~~lv~~~~e~~iF~L~dai~~~d~~~al~~l~~Ll-~~ge~p~~iL~lL~ 299 (620)
T PRK14954 239 SEAEKVIAYQGVAELLNYIDDEQFFDVTDAIAENDAVKMLEVARFVI-DNGYDEQDFLEKLI 299 (620)
T ss_pred cccCCccCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999 99999999988775
No 34
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=5.2e-36 Score=271.29 Aligned_cols=262 Identities=21% Similarity=0.307 Sum_probs=232.5
Q ss_pred cChhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCc-----------------
Q 021660 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ----------------- 102 (309)
Q Consensus 41 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~----------------- 102 (309)
..++++|||.+|++++||+.+++.+.+++..++.++ ++|+||+|+|||++++.+++.+.|..
T Consensus 4 ~~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~ 83 (563)
T PRK06647 4 RGTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSID 83 (563)
T ss_pred HHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHH
Confidence 458899999999999999999999999999998888 99999999999999999999998642
Q ss_pred --ccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecC
Q 021660 103 --YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (309)
Q Consensus 103 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~ 180 (309)
...+++.++.....+.+.+++........+ +. .+++++||||+|.++...++.|++.+++++..+.||++++.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p---~~--~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte 158 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPP---AS--SRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTE 158 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhch---hc--CCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCC
Confidence 234566676655456677766554433221 11 26899999999999999999999999999999999999998
Q ss_pred CcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCcCHHHHH
Q 021660 181 VNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEAVY 259 (309)
Q Consensus 181 ~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~-~~i~~~~v~ 259 (309)
..++.+++.+||+.++|.+++.+++..++.+.+..+|+.++++++..|++.++|++|.+++.|+++..+. +.++.+++.
T Consensus 159 ~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alslLdklis~~~~~It~e~V~ 238 (563)
T PRK06647 159 VHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDSDITLEQIR 238 (563)
T ss_pred hHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCCHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999999999998876654 679999999
Q ss_pred hhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 260 LCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
.+++......++++++++..+|...++..+++++ ..|.++..++..|.
T Consensus 239 ~llg~~~~~~if~LidaI~~~D~~~al~~l~~Ll-~~G~d~~~iL~~Ll 286 (563)
T PRK06647 239 SKMGLTGDEFLEKLASSILNEDAKELLCVLDSVF-LSGVSVEQFLLDCI 286 (563)
T ss_pred HHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999 89999999988764
No 35
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=6.2e-36 Score=273.68 Aligned_cols=263 Identities=23% Similarity=0.356 Sum_probs=235.5
Q ss_pred CcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCc----------------
Q 021660 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ---------------- 102 (309)
Q Consensus 40 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~---------------- 102 (309)
..+|+++|||.+|++++|++++++.|.+++..++.++ +||+||+|+|||++++.+++.+.|..
T Consensus 4 ~~~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~ 83 (614)
T PRK14971 4 YIVSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVA 83 (614)
T ss_pred hHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHH
Confidence 4569999999999999999999999999999999888 89999999999999999999997532
Q ss_pred ----ccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEe
Q 021660 103 ----YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC 178 (309)
Q Consensus 103 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~ 178 (309)
...++..++.....+.+.++..+.++...+.. .+++++||||++.++.+.++.|+++|++++..++||+++
T Consensus 84 ~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~-----~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~t 158 (614)
T PRK14971 84 FNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQI-----GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILAT 158 (614)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhhCccc-----CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 24567777776556677777776655332221 268999999999999999999999999999999999999
Q ss_pred cCCcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCcCHHH
Q 021660 179 NQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEA 257 (309)
Q Consensus 179 ~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~-~~i~~~~ 257 (309)
+...++.+++++||..+.|.+++.+++..++..++.++|+.+++++++.|++.++||+|.+++.+++++.+. +.|+.+.
T Consensus 159 t~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~~Lekl~~y~~~~It~~~ 238 (614)
T PRK14971 159 TEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGNITYKS 238 (614)
T ss_pred CCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCccHHH
Confidence 988999999999999999999999999999999999999999999999999999999999999999876554 4699999
Q ss_pred HHhhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 258 VYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 258 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
+...+.....+.+|++++++..++...++..+.+++ ..|++|..|+..|.
T Consensus 239 V~~~l~~~~~~~iF~L~dai~~~~~~~al~ll~~Ll-~~g~~~~~iL~~L~ 288 (614)
T PRK14971 239 VIENLNILDYDYYFRLTDALLAGKVSDSLLLFDEIL-NKGFDGSHFITGLA 288 (614)
T ss_pred HHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999 99999999998775
No 36
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.7e-36 Score=251.01 Aligned_cols=254 Identities=26% Similarity=0.369 Sum_probs=215.6
Q ss_pred cChhhhcCCCCccccccChHHHH---HHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcc
Q 021660 41 SPWVEKYRPQSLADVAAHRDIVD---TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG 117 (309)
Q Consensus 41 ~~~~~~~~p~~~~~~ig~~~~~~---~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 117 (309)
.|++++.||.+++++|||++.+. -+.+.+..+..++++|||||||||||+++.+++.. +..|..++... .+
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~-----~~~f~~~sAv~-~g 85 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT-----NAAFEALSAVT-SG 85 (436)
T ss_pred cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh-----CCceEEecccc-cc
Confidence 48999999999999999999985 78899999999999999999999999999999997 78888888887 57
Q ss_pred hHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEe--cCCcccchhhhcceeEE
Q 021660 118 IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC--NQVNKIIPALQSRCTRF 195 (309)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~--~~~~~l~~~l~~r~~~i 195 (309)
..+++..+......... .++.||+|||+|++++.+++.|+..+|+- ...+|.+| |....+.++|++||+++
T Consensus 86 vkdlr~i~e~a~~~~~~-----gr~tiLflDEIHRfnK~QQD~lLp~vE~G--~iilIGATTENPsF~ln~ALlSR~~vf 158 (436)
T COG2256 86 VKDLREIIEEARKNRLL-----GRRTILFLDEIHRFNKAQQDALLPHVENG--TIILIGATTENPSFELNPALLSRARVF 158 (436)
T ss_pred HHHHHHHHHHHHHHHhc-----CCceEEEEehhhhcChhhhhhhhhhhcCC--eEEEEeccCCCCCeeecHHHhhhhhee
Confidence 77888777766443221 25789999999999999999999999932 33334434 55668899999999999
Q ss_pred EecCCChHHHHHHHHHHHH--HcCCC-----CCHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC---CcCHHHHHhhhCC-
Q 021660 196 RFAPLEPVHVTERLKHVIE--AEGLD-----VTEGGLAALVRLCNGDMRKALNILQSTHMASQ---QITEEAVYLCTGN- 264 (309)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~--~~~~~-----~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~~---~i~~~~v~~~~~~- 264 (309)
.|.|++.+++.+.+++-+. ..++. +++++++.++..++||.|.++|.|+.+....+ .++.+++.+++.+
T Consensus 159 ~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~ 238 (436)
T COG2256 159 ELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRR 238 (436)
T ss_pred eeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhh
Confidence 9999999999999998443 34444 78999999999999999999999999987763 3457888777743
Q ss_pred ---------CChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 265 ---------PLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 265 ---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
.-++.++.++++++++|++.+++++++|+ +.|.+|.-|.+.|+
T Consensus 239 ~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi-~~GeDp~yiARRlv 290 (436)
T COG2256 239 SARFDKDGDAHYDLISALHKSVRGSDPDAALYYLARMI-EAGEDPLYIARRLV 290 (436)
T ss_pred hhccCCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHH-hcCCCHHHHHHHHH
Confidence 34677999999999999999999999999 99999999988775
No 37
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=7.5e-36 Score=269.62 Aligned_cols=262 Identities=22% Similarity=0.368 Sum_probs=231.9
Q ss_pred CcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCc----------------
Q 021660 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ---------------- 102 (309)
Q Consensus 40 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~---------------- 102 (309)
..+|+++|||.+|++++|++++++.+.+++..++.++ ++|+||+|+|||++|+.+++.++|..
T Consensus 3 ~~~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i 82 (527)
T PRK14969 3 YQVLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEI 82 (527)
T ss_pred cHHHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 4568999999999999999999999999999998888 79999999999999999999998742
Q ss_pred ---ccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021660 103 ---YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (309)
Q Consensus 103 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~ 179 (309)
...++++++.....+.+.++..+......+. ..+++|+||||+|.++.+..+.|++.+++++..+.||++|+
T Consensus 83 ~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~-----~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~ 157 (527)
T PRK14969 83 DSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPT-----RGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATT 157 (527)
T ss_pred hcCCCCceeEeeccccCCHHHHHHHHHHHhhCcc-----cCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeC
Confidence 1235666776655677777766655433221 12688999999999999999999999999999999999999
Q ss_pred CCcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCcCHHHH
Q 021660 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEAV 258 (309)
Q Consensus 180 ~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~-~~i~~~~v 258 (309)
+..+++..+.+||..+.|.+++.+++.+++.++++++|+.++++++..|++.++|++|.+++.++.+..++ +.|+.++|
T Consensus 158 d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lldqai~~~~~~I~~~~v 237 (527)
T PRK14969 158 DPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGGGTVNESEV 237 (527)
T ss_pred ChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHH
Confidence 99899889999999999999999999999999999999999999999999999999999999998776554 67999999
Q ss_pred HhhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHh
Q 021660 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREV 307 (309)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l 307 (309)
..+++....+.++++++++..++...++..++++. ..|.++..++..|
T Consensus 238 ~~~~~~~~~~~i~~ll~al~~~~~~~~l~~~~~l~-~~~~~~~~~l~~l 285 (527)
T PRK14969 238 RAMLGAIDQDYLFALLEALLAQDGAALLAIADAME-ERSLSFDAALQDL 285 (527)
T ss_pred HHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCHHHHHHHH
Confidence 99999988888999999999999999999999999 8999988887765
No 38
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=100.00 E-value=1.8e-35 Score=259.13 Aligned_cols=262 Identities=27% Similarity=0.437 Sum_probs=229.6
Q ss_pred cChhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCcc----------------
Q 021660 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY---------------- 103 (309)
Q Consensus 41 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~---------------- 103 (309)
.||.++|+|.++++++|++..++.+.+++..++.++ ++|+||||+|||++++.+++.+.+...
T Consensus 2 ~~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~ 81 (355)
T TIGR02397 2 QVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEIN 81 (355)
T ss_pred ccHHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 589999999999999999999999999999988777 899999999999999999999876421
Q ss_pred ---cccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecC
Q 021660 104 ---HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (309)
Q Consensus 104 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~ 180 (309)
...++.++.......+.++..+...... + + ..++++|+|||++.+.....+.|++.+++++..+.+|++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-p--~--~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~ 156 (355)
T TIGR02397 82 SGSSLDVIEIDAASNNGVDDIREILDNVKYA-P--S--SGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTE 156 (355)
T ss_pred cCCCCCEEEeeccccCCHHHHHHHHHHHhcC-c--c--cCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCC
Confidence 3456666665444555555555543322 1 1 126789999999999998899999999998888999999988
Q ss_pred CcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCcCHHHHH
Q 021660 181 VNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEAVY 259 (309)
Q Consensus 181 ~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~-~~i~~~~v~ 259 (309)
..++.+++.+||..+.|.+++.+++..|+..++++.|+.+++++++.+++.++|++|.+.+.++++..+. +.||.++|.
T Consensus 157 ~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~lekl~~~~~~~it~~~v~ 236 (355)
T TIGR02397 157 PHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGNITYEDVN 236 (355)
T ss_pred HHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCHHHHH
Confidence 8888899999999999999999999999999999999999999999999999999999999999888765 569999999
Q ss_pred hhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 260 LCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
+++.......++++++++..++...++..+.+++ ..|.+|..++..|.
T Consensus 237 ~~~~~~~~~~i~~l~~ai~~~~~~~a~~~~~~l~-~~~~~~~~il~~l~ 284 (355)
T TIGR02397 237 ELLGLVDDEKLIELLEAILNKDTAEALKILDEIL-ESGVDPEKFLEDLI 284 (355)
T ss_pred HHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999 89999999988765
No 39
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4e-35 Score=257.24 Aligned_cols=264 Identities=25% Similarity=0.390 Sum_probs=229.9
Q ss_pred CCcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCc-------ccccEEEE
Q 021660 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ-------YHNMILEL 110 (309)
Q Consensus 39 ~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~-------~~~~~~~~ 110 (309)
+..+|+++|||.++++++|++.+++.+.+++..++.++ ++|+||||+|||++++.+++.+.+.+ ....++++
T Consensus 3 ~~~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l 82 (367)
T PRK14970 3 NFVVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL 82 (367)
T ss_pred chHHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe
Confidence 34679999999999999999999999999999887764 99999999999999999999987632 24445555
Q ss_pred ecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhc
Q 021660 111 NASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQS 190 (309)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~l~~ 190 (309)
+.....+.+.+...+......+. ..++++|+|||++.+.....+.|++.+++++..+.+|++++...++.+++.+
T Consensus 83 ~~~~~~~~~~i~~l~~~~~~~p~-----~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~s 157 (367)
T PRK14970 83 DAASNNSVDDIRNLIDQVRIPPQ-----TGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILS 157 (367)
T ss_pred ccccCCCHHHHHHHHHHHhhccc-----cCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHh
Confidence 55444455666665554432211 1257899999999999888999999999988888899999888899999999
Q ss_pred ceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCcCHHHHHhhhCCCChHH
Q 021660 191 RCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEAVYLCTGNPLPKD 269 (309)
Q Consensus 191 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~-~~i~~~~v~~~~~~~~~~~ 269 (309)
||..++|.+++.+++..++...++++|+.+++++++.+++.++||+|.+++.|++++.+. +.||.+++..++.......
T Consensus 158 r~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~lekl~~y~~~~it~~~v~~~~~~~~~~~ 237 (367)
T PRK14970 158 RCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYDT 237 (367)
T ss_pred cceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCCHHH
Confidence 999999999999999999999999999999999999999999999999999999998763 4599999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 270 IEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
++++++++..++...++..+++++ ..|.+|..|+..|.
T Consensus 238 if~l~~ai~~~~~~~a~~~~~~l~-~~~~~~~~il~~l~ 275 (367)
T PRK14970 238 YINVTDLILENKIPELLLAFNEIL-RKGFDGHHFIAGLA 275 (367)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHH
Confidence 999999999999999999999999 89999999988774
No 40
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=100.00 E-value=7e-35 Score=253.78 Aligned_cols=264 Identities=35% Similarity=0.604 Sum_probs=223.3
Q ss_pred cChhhhcCCCCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCc----
Q 021660 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR---- 116 (309)
Q Consensus 41 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~---- 116 (309)
.+|.++|+|.++++++|++.+++.+.+++..+..++++|+||||+|||++++.+++.+.+.++...++.+++.+..
T Consensus 3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~ 82 (337)
T PRK12402 3 PLWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGK 82 (337)
T ss_pred CchHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcch
Confidence 4799999999999999999999999999999888889999999999999999999999766544455555554310
Q ss_pred ----------------------chHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceE
Q 021660 117 ----------------------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRF 174 (309)
Q Consensus 117 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~ 174 (309)
....+...+.......+ + ...+++|+|||++.+..+.++.|..+++..+..+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~ 158 (337)
T PRK12402 83 KYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRP--L--SADYKTILLDNAEALREDAQQALRRIMEQYSRTCRF 158 (337)
T ss_pred hhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCC--C--CCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeE
Confidence 01111111222211111 1 125679999999999988889999999988888889
Q ss_pred EEEecCCcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcC
Q 021660 175 ALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQIT 254 (309)
Q Consensus 175 i~~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~~~i~ 254 (309)
|++++....+.+.+.+|+..+.|.+++.+++..++..++.++|+.+++++++.++++++||+|.+++.++.++...+.||
T Consensus 159 Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~~l~~~~~~~~~It 238 (337)
T PRK12402 159 IIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAALAAGEIT 238 (337)
T ss_pred EEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC
Confidence 99988888888899999999999999999999999999999999999999999999999999999999999886667899
Q ss_pred HHHHHhhhCC-CChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 255 EEAVYLCTGN-PLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 255 ~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
.+++.+++.. ..+..++++++++..++...++..+.+++...|.++..|+..|.
T Consensus 239 ~~~v~~~~~~~~~~~~i~~l~~ai~~~~~~~a~~~l~~l~~~~g~~~~~i~~~l~ 293 (337)
T PRK12402 239 MEAAYEALGDVGTDEVIESLLDAAEAGDFTDARKTLDDLLIDEGLSGGEVLEELL 293 (337)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999987 56889999999999999999999999997578999999888764
No 41
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=7.8e-35 Score=267.30 Aligned_cols=262 Identities=25% Similarity=0.414 Sum_probs=231.3
Q ss_pred cChhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCcc----------------
Q 021660 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY---------------- 103 (309)
Q Consensus 41 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~---------------- 103 (309)
..|.++|||.+|++++|++++++.|.+++..++.++ ++|+||+|+|||++++.+++.+.|...
T Consensus 4 ~~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i 83 (585)
T PRK14950 4 QVLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAI 83 (585)
T ss_pred HHHHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHH
Confidence 348899999999999999999999999999888777 799999999999999999999976432
Q ss_pred ----cccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021660 104 ----HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (309)
Q Consensus 104 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~ 179 (309)
..++++++.....+.+.++..+........ ...++|+||||+|.+..+..+.|++++++++..+.||++++
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~-----~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~ 158 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDAREIIERVQFRPA-----LARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATT 158 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcc-----cCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 245666666555666666665544332211 12689999999999999999999999999998999999999
Q ss_pred CCcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCcCHHHH
Q 021660 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEAV 258 (309)
Q Consensus 180 ~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~-~~i~~~~v 258 (309)
...++.+.+.+||..+.|.+++..++..++..++.++|+.++++++..|++.++||+|.+++.|++++.+. +.|+.+++
T Consensus 159 ~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~LekL~~y~~~~It~e~V 238 (585)
T PRK14950 159 EVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGGEISLSQV 238 (585)
T ss_pred ChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999987654 67999999
Q ss_pred HhhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
..++.......++++++++..+|...++..+.+++ ..|.++..|+..|.
T Consensus 239 ~~ll~~s~~~~vf~Lidal~~~d~~~al~~l~~L~-~~g~~~~~il~~L~ 287 (585)
T PRK14950 239 QSLLGISGDEEVKALAEALLAKDLKAALRTLNAVA-ADGADLRQFTRDLV 287 (585)
T ss_pred HHHhcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999 89999999988764
No 42
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.2e-34 Score=265.15 Aligned_cols=263 Identities=24% Similarity=0.392 Sum_probs=233.6
Q ss_pred CcChhhhcCCCCccccccChHHHHHHHHHHhcCCCC-eEEEECCCCCcHHHHHHHHHHHHccCc----------------
Q 021660 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLP-HLLLYGPPGTGKTSTILAVARKLYGAQ---------------- 102 (309)
Q Consensus 40 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~-~~ll~G~~G~GKT~l~~~l~~~~~~~~---------------- 102 (309)
..||.++|+|..|++++|+++++..|.+++..++.. ++||+||+|+|||++|+.+++.+.|..
T Consensus 3 ~~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~ 82 (620)
T PRK14948 3 YEPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCR 82 (620)
T ss_pred cchHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHH
Confidence 467999999999999999999999999999988764 499999999999999999999998742
Q ss_pred -----ccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEE
Q 021660 103 -----YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALI 177 (309)
Q Consensus 103 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~ 177 (309)
...++++++.....+++.+++.+........ ...++|+||||+|.|..+..+.|++.+++++..++||++
T Consensus 83 ~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~-----~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~ 157 (620)
T PRK14948 83 AIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPV-----QARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLA 157 (620)
T ss_pred HHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChh-----cCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEE
Confidence 1235666666555677777777765432221 126789999999999999999999999999999999999
Q ss_pred ecCCcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcCHHH
Q 021660 178 CNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEA 257 (309)
Q Consensus 178 ~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~~~i~~~~ 257 (309)
+++...+.+++++||..++|.+++.+++..++..++.++++.++++++..+++.++|++|.+++.|+.++.+.+.|+.++
T Consensus 158 t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~lLeklsL~~~~It~e~ 237 (620)
T PRK14948 158 TTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSLLPGPITPEA 237 (620)
T ss_pred eCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCCCHHH
Confidence 99888999999999999999999999999999999999999999999999999999999999999999988878899999
Q ss_pred HHhhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 258 VYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 258 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
|.++++......++++++++..++...++..+.+++ +.|.++..++..|.
T Consensus 238 V~~lvg~~~e~~i~~Ll~ai~~~d~~~al~~~~~Ll-~~g~~p~~iL~~L~ 287 (620)
T PRK14948 238 VWDLLGAVPEQDLLNLLKALASNDPESLLDSCRQLL-DRGREPLAILQGLA 287 (620)
T ss_pred HHHHhcCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCHHHHHHHHH
Confidence 999999988889999999999999999999999999 99999998887764
No 43
>PRK13342 recombination factor protein RarA; Reviewed
Probab=100.00 E-value=5.3e-32 Score=239.99 Aligned_cols=253 Identities=26% Similarity=0.399 Sum_probs=209.4
Q ss_pred ChhhhcCCCCccccccChHHHHH---HHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcch
Q 021660 42 PWVEKYRPQSLADVAAHRDIVDT---IDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 118 (309)
Q Consensus 42 ~~~~~~~p~~~~~~ig~~~~~~~---l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 118 (309)
||+++|||.++++++|+++.+.. +.+++..+..++++|+||||||||++++.+++.+ ...+..+++.. .+.
T Consensus 1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~-----~~~~~~l~a~~-~~~ 74 (413)
T PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT-----DAPFEALSAVT-SGV 74 (413)
T ss_pred ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCEEEEeccc-ccH
Confidence 69999999999999999999776 9999999888889999999999999999999987 56677777764 344
Q ss_pred HHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEec--CCcccchhhhcceeEEE
Q 021660 119 DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN--QVNKIIPALQSRCTRFR 196 (309)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~--~~~~l~~~l~~r~~~i~ 196 (309)
..++..+........ ..++.+|+|||+|.+....++.|+..+++ ....+|.+++ ....+.+++.+||..+.
T Consensus 75 ~~ir~ii~~~~~~~~-----~g~~~vL~IDEi~~l~~~~q~~LL~~le~--~~iilI~att~n~~~~l~~aL~SR~~~~~ 147 (413)
T PRK13342 75 KDLREVIEEARQRRS-----AGRRTILFIDEIHRFNKAQQDALLPHVED--GTITLIGATTENPSFEVNPALLSRAQVFE 147 (413)
T ss_pred HHHHHHHHHHHHhhh-----cCCceEEEEechhhhCHHHHHHHHHHhhc--CcEEEEEeCCCChhhhccHHHhccceeeE
Confidence 555555544432211 11568999999999999999999999985 2344444443 34477899999999999
Q ss_pred ecCCChHHHHHHHHHHHHHc--CC-CCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcCHHHHHhhhCCC--------
Q 021660 197 FAPLEPVHVTERLKHVIEAE--GL-DVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNP-------- 265 (309)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~--~~-~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~-------- 265 (309)
|.+++.+++..++.+.+... ++ .+++++++.+++.++||+|.+++.++.++...+.|+.+++..++...
T Consensus 148 ~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~~d~~~ 227 (413)
T PRK13342 148 LKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALGVDSITLELLEEALQKRAARYDKDG 227 (413)
T ss_pred eCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhccCCCc
Confidence 99999999999999988753 44 89999999999999999999999999887766779999998887642
Q ss_pred --ChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 266 --LPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 266 --~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
.++.+..++++++++|++.++.++..|+ ..|.+|..|.+.|.
T Consensus 228 ~~~~~~isa~~ks~rgsd~~aal~~l~~~l-~~G~d~~~i~rrl~ 271 (413)
T PRK13342 228 DEHYDLISALHKSIRGSDPDAALYYLARML-EAGEDPLFIARRLV 271 (413)
T ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCHHHHHHHHH
Confidence 2445778888999999999999999999 99999999998875
No 44
>PRK04195 replication factor C large subunit; Provisional
Probab=100.00 E-value=3.3e-31 Score=239.18 Aligned_cols=253 Identities=28% Similarity=0.407 Sum_probs=208.0
Q ss_pred cChhhhcCCCCccccccChHHHHHHHHHHhcCC----CCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCc
Q 021660 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENR----LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR 116 (309)
Q Consensus 41 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~----~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 116 (309)
.+|.++|+|.++++++|++..+..+..|+.... .++++|+||||+|||++|+++++++ +..+++++.++..
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-----~~~~ielnasd~r 76 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-----GWEVIELNASDQR 76 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCCEEEEcccccc
Confidence 479999999999999999999999999987432 4559999999999999999999998 6778888888766
Q ss_pred chHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH----HHHHHHHHHHHHhcCCceEEEEecCCcccch-hhhcc
Q 021660 117 GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK----DAQFALRRVIEKYTKNTRFALICNQVNKIIP-ALQSR 191 (309)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~----~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~-~l~~r 191 (309)
....+...+......... ++ ..+++|||||+|.+.. ...+.|.++++. ....+|+++|....... .++++
T Consensus 77 ~~~~i~~~i~~~~~~~sl-~~--~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrsr 151 (482)
T PRK04195 77 TADVIERVAGEAATSGSL-FG--ARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRNA 151 (482)
T ss_pred cHHHHHHHHHHhhccCcc-cC--CCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhcc
Confidence 666666666555443332 22 2578999999999975 456788888874 35678888888877766 88999
Q ss_pred eeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcCHHHHHhhhCCCChHHHH
Q 021660 192 CTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIE 271 (309)
Q Consensus 192 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~ 271 (309)
|..+.|++++..++..++...+..+|+.+++++++.|++.++||+|.+++.|+.++...+.++.+++...........++
T Consensus 152 ~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~~d~~~~if 231 (482)
T PRK04195 152 CLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGRRDREESIF 231 (482)
T ss_pred ceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhcCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999977656789999999888777888899
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHHhcCCCHHHHHHHh
Q 021660 272 QISYWLLN-ESFADSFKRISEMKMRKGLALVDIVREV 307 (309)
Q Consensus 272 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~~~~~~l 307 (309)
++++.+.. .+...++..+. ....+|..++..|
T Consensus 232 ~~l~~i~~~k~~~~a~~~~~----~~~~~~~~i~~~l 264 (482)
T PRK04195 232 DALDAVFKARNADQALEASY----DVDEDPDDLIEWI 264 (482)
T ss_pred HHHHHHHCCCCHHHHHHHHH----cccCCHHHHHHHH
Confidence 99999886 77777765443 3445666665544
No 45
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=100.00 E-value=6.4e-31 Score=243.61 Aligned_cols=257 Identities=23% Similarity=0.302 Sum_probs=204.3
Q ss_pred CCcChhhhcCCCCccccccChHHHH---HHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCC
Q 021660 39 KASPWVEKYRPQSLADVAAHRDIVD---TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115 (309)
Q Consensus 39 ~~~~~~~~~~p~~~~~~ig~~~~~~---~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 115 (309)
...||.++|||.++++++|+++.+. .+.+.+..++.++++|+||||||||++++.+++.. ...+..+++..
T Consensus 14 ~~~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~-----~~~f~~lna~~- 87 (725)
T PRK13341 14 SEAPLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT-----RAHFSSLNAVL- 87 (725)
T ss_pred ccCChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh-----cCcceeehhhh-
Confidence 3458999999999999999999984 78888898888899999999999999999999987 44556666543
Q ss_pred cchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEec--CCcccchhhhccee
Q 021660 116 RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN--QVNKIIPALQSRCT 193 (309)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~--~~~~l~~~l~~r~~ 193 (309)
.+...++..+......... ...+.+|+|||+|.++...++.|+..++.. ...+|.+++ ....+.+++.+|+.
T Consensus 88 ~~i~dir~~i~~a~~~l~~----~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g--~IiLI~aTTenp~~~l~~aL~SR~~ 161 (725)
T PRK13341 88 AGVKDLRAEVDRAKERLER----HGKRTILFIDEVHRFNKAQQDALLPWVENG--TITLIGATTENPYFEVNKALVSRSR 161 (725)
T ss_pred hhhHHHHHHHHHHHHHhhh----cCCceEEEEeChhhCCHHHHHHHHHHhcCc--eEEEEEecCCChHhhhhhHhhcccc
Confidence 3334444444433221111 114679999999999999999999888742 233333332 33467789999999
Q ss_pred EEEecCCChHHHHHHHHHHHH-------HcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-----C--CcCHHHHH
Q 021660 194 RFRFAPLEPVHVTERLKHVIE-------AEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-----Q--QITEEAVY 259 (309)
Q Consensus 194 ~i~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~-----~--~i~~~~v~ 259 (309)
++.|++++.+++..++++.+. ..++.+++++++.|++.++||+|.+++.|+.+.... + .+|.+.+.
T Consensus 162 v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~ 241 (725)
T PRK13341 162 LFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALELAVESTPPDEDGLIDITLAIAE 241 (725)
T ss_pred ceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccCCCCceeccHHHHH
Confidence 999999999999999999887 456889999999999999999999999999876532 1 26766666
Q ss_pred hhh----------CCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 260 LCT----------GNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 260 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
+.+ +...++.++.++++++++|++.+++++++|+ ..|++|..|++.|.
T Consensus 242 e~l~~~~~~ydk~gd~hyd~Isa~~ksirgsD~daAl~~la~ml-~~Gedp~~I~Rrl~ 299 (725)
T PRK13341 242 ESIQQRAVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMV-EAGEDPRFIFRRML 299 (725)
T ss_pred HHHHHhhhhcccCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCHHHHHHHHH
Confidence 654 3456788999999999999999999999999 99999999998875
No 46
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.97 E-value=3.8e-29 Score=215.58 Aligned_cols=252 Identities=31% Similarity=0.433 Sum_probs=201.3
Q ss_pred CCCCcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCC
Q 021660 37 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115 (309)
Q Consensus 37 ~~~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 115 (309)
.....+|.++|||.++++++|+++..+.+..++..++.++ ++|+||+|+|||++++.+++++ ...+..+++...
T Consensus 5 ~~~~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~-----~~~~~~i~~~~~ 79 (316)
T PHA02544 5 NPNEFMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV-----GAEVLFVNGSDC 79 (316)
T ss_pred CCCCCcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh-----CccceEeccCcc
Confidence 4567889999999999999999999999999999888877 5559999999999999999987 445666776652
Q ss_pred cchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCC-CHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeE
Q 021660 116 RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAM-TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTR 194 (309)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l-~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~l~~r~~~ 194 (309)
..+.++..+..+....+. . .++++|+|||+|.+ ..+.++.|..+++.++.++.+|++++....+.+++++||..
T Consensus 80 -~~~~i~~~l~~~~~~~~~--~--~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~ 154 (316)
T PHA02544 80 -RIDFVRNRLTRFASTVSL--T--GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRV 154 (316)
T ss_pred -cHHHHHHHHHHHHHhhcc--c--CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceE
Confidence 244444545444433221 1 25789999999999 66677888888999888999999999999999999999999
Q ss_pred EEecCCChHHHHHHHHH-------HHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcCHHHHHhhhCCCCh
Q 021660 195 FRFAPLEPVHVTERLKH-------VIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLP 267 (309)
Q Consensus 195 i~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~ 267 (309)
+.|+.|+.++...++.. .+..+|+.++++++..+++.+.|+.|.+++.++.++. .+.++.+++.... .
T Consensus 155 i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r~~l~~l~~~~~-~~~i~~~~l~~~~----~ 229 (316)
T PHA02544 155 IDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINELQRYAS-TGKIDAGILSEVT----N 229 (316)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHc-cCCCCHHHHHHhh----H
Confidence 99999998887766443 3445789999999999999999999999999997764 3678888877655 5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHh
Q 021660 268 KDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREV 307 (309)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l 307 (309)
..++.+++++...+...+.. ....+ +.++.+++..+
T Consensus 230 ~~~~~l~~~l~~~d~~~~~~-~~~~~---~~~~~~~l~~~ 265 (316)
T PHA02544 230 SDIDDVVEALKAKDFKAVRA-LAPNY---ANDYASFVGKL 265 (316)
T ss_pred HHHHHHHHHHHcCCHHHHHH-HHHHh---ccCHHHHHHHH
Confidence 66788888888888777666 33333 77777777664
No 47
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.97 E-value=2.3e-30 Score=213.23 Aligned_cols=261 Identities=23% Similarity=0.301 Sum_probs=211.1
Q ss_pred CCcChhhhcCCCCccccccChHHHH---HHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCC
Q 021660 39 KASPWVEKYRPQSLADVAAHRDIVD---TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115 (309)
Q Consensus 39 ~~~~~~~~~~p~~~~~~ig~~~~~~---~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 115 (309)
...|++++.||++++|++||++++. .|+.++..++.++++||||||||||++|+.+++... .....+++++.+.
T Consensus 124 qh~PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk--~~SyrfvelSAt~- 200 (554)
T KOG2028|consen 124 QHKPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSK--KHSYRFVELSATN- 200 (554)
T ss_pred ccCChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcC--CCceEEEEEeccc-
Confidence 3458999999999999999999986 788899999999999999999999999999998863 3346688888776
Q ss_pred cchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEe--cCCcccchhhhccee
Q 021660 116 RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC--NQVNKIIPALQSRCT 193 (309)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~--~~~~~l~~~l~~r~~ 193 (309)
.....++..+++.-..... .. .+.||+|||++++++.+++.|+..++.- ...+|.+| |....+..+|.+||.
T Consensus 201 a~t~dvR~ife~aq~~~~l--~k--rkTilFiDEiHRFNksQQD~fLP~VE~G--~I~lIGATTENPSFqln~aLlSRC~ 274 (554)
T KOG2028|consen 201 AKTNDVRDIFEQAQNEKSL--TK--RKTILFIDEIHRFNKSQQDTFLPHVENG--DITLIGATTENPSFQLNAALLSRCR 274 (554)
T ss_pred cchHHHHHHHHHHHHHHhh--hc--ceeEEEeHHhhhhhhhhhhcccceeccC--ceEEEecccCCCccchhHHHHhccc
Confidence 4555666666554333222 12 5789999999999999999999999832 33444444 455678899999999
Q ss_pred EEEecCCChHHHHHHHHHHHHHc------C-------CCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc----C-----
Q 021660 194 RFRFAPLEPVHVTERLKHVIEAE------G-------LDVTEGGLAALVRLCNGDMRKALNILQSTHMAS----Q----- 251 (309)
Q Consensus 194 ~i~~~~~~~~~~~~~l~~~~~~~------~-------~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~----~----- 251 (309)
++-+.+++.+.+..+|.+-..-. . +.+++.++++++..+.||.|.++|.|+...... +
T Consensus 275 VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~tr~g~~~~~ 354 (554)
T KOG2028|consen 275 VFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFCTRSGQSSRV 354 (554)
T ss_pred eeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCcccc
Confidence 99999999999999998854421 1 236788999999999999999999998774322 2
Q ss_pred CcCHHHHHhhhC----------CCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhhC
Q 021660 252 QITEEAVYLCTG----------NPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTM 309 (309)
Q Consensus 252 ~i~~~~v~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~ 309 (309)
.++.+++.+.+. ..-++.++.+.++++++|.+.++++|++|+ .-|++|..+.+.|+|
T Consensus 355 ~lSidDvke~lq~s~~~YDr~Ge~HYntISA~HKSmRG~D~nAslY~LaRML-egGEdPLYVARRlvR 421 (554)
T KOG2028|consen 355 LLSIDDVKEGLQRSHILYDRAGEEHYNTISALHKSMRGSDQNASLYWLARML-EGGEDPLYVARRLVR 421 (554)
T ss_pred eecHHHHHHHHhhccceecccchhHHHHHHHHHHhhcCCccchHHHHHHHHH-ccCCCcHHHHHHHHH
Confidence 588889888774 345778999999999999999999999999 999999999988865
No 48
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.97 E-value=3.9e-29 Score=198.75 Aligned_cols=265 Identities=32% Similarity=0.559 Sum_probs=220.1
Q ss_pred ChhhhcCCCCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcc------------------
Q 021660 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY------------------ 103 (309)
Q Consensus 42 ~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~------------------ 103 (309)
.|.++|+|++++.++++.+....++.....+..||+++|||+|.||.|.+.++.+++.+.|.
T Consensus 2 LWvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kkl 81 (351)
T KOG2035|consen 2 LWVDKYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKL 81 (351)
T ss_pred cchhhcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceE
Confidence 59999999999999999999999999999888899999999999999999999999977431
Q ss_pred ------cccEEEEecCCCcch--HHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEE
Q 021660 104 ------HNMILELNASDDRGI--DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFA 175 (309)
Q Consensus 104 ------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i 175 (309)
+...+++++++.... -.+.+.+++.+++.+.....+...++++|.|+|.+..+++++|...|+.+..++++|
T Consensus 82 EistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlI 161 (351)
T KOG2035|consen 82 EISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLI 161 (351)
T ss_pred EEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEE
Confidence 112334444443222 246778888888888877777789999999999999999999999999999999999
Q ss_pred EEecCCcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcCH
Q 021660 176 LICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITE 255 (309)
Q Consensus 176 ~~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~~~i~~ 255 (309)
+++|...++.+.+++||..+.++.|+++|+..++.+.++++|+.++.+.+..|++.++||+|.++-.|+.++......+.
T Consensus 162 l~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a 241 (351)
T KOG2035|consen 162 LVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTA 241 (351)
T ss_pred EEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998876544433
Q ss_pred HHHHhhhCCCChHHHHHHHHHHhcC-CHH---HHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 256 EAVYLCTGNPLPKDIEQISYWLLNE-SFA---DSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 256 ~~v~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
.- .......|...+.++...+... .+. +....+.+++ ..++.|.-|+..|.
T Consensus 242 ~~-~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL-~~CIPP~~Ilk~Ll 296 (351)
T KOG2035|consen 242 NS-QVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELL-SHCIPPNTILKELL 296 (351)
T ss_pred cC-CCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH-hccCChHHHHHHHH
Confidence 32 2233344555566666554433 333 3556688888 89999999888764
No 49
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.97 E-value=3.1e-30 Score=202.40 Aligned_cols=197 Identities=18% Similarity=0.272 Sum_probs=144.4
Q ss_pred CCCCcChhhhcCCCCccccccChHHHHHHHHHHh-----cCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEe
Q 021660 37 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTS-----ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELN 111 (309)
Q Consensus 37 ~~~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~-----~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 111 (309)
.....++.+++||.+++|+|||++++..+.-++. +...++++||||||+||||+|+.+|+++ +..+...+
T Consensus 8 ~~~~~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~-----~~~~~~~s 82 (233)
T PF05496_consen 8 QEEEAPLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL-----GVNFKITS 82 (233)
T ss_dssp ----S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC-----T--EEEEE
T ss_pred CCcchhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc-----CCCeEecc
Confidence 4455678899999999999999999998776654 2356789999999999999999999998 66677777
Q ss_pred cCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc------------------CCce
Q 021660 112 ASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT------------------KNTR 173 (309)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~------------------~~~~ 173 (309)
........++...+..+. .+.||+|||+|++++.+++.|+.+||+.. +...
T Consensus 83 g~~i~k~~dl~~il~~l~-----------~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 83 GPAIEKAGDLAAILTNLK-----------EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp CCC--SCHHHHHHHHT-------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred chhhhhHHHHHHHHHhcC-----------CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 655444455555444321 46799999999999999999999999632 2345
Q ss_pred EEEEecCCcccchhhhcce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 021660 174 FALICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA 249 (309)
Q Consensus 174 ~i~~~~~~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~ 249 (309)
+|.+|+....+.+.+++|| ...++..++.+++.+++++.+...++.+++++..+|+.++.|.||-+.++|+.+--+
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvrD~ 228 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIANRLLRRVRDF 228 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHHHHHHHCCC
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 6778888889999999999 556899999999999999999999999999999999999999999999999987543
No 50
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.97 E-value=9.6e-30 Score=206.41 Aligned_cols=275 Identities=54% Similarity=0.717 Sum_probs=245.1
Q ss_pred CCCCCCCcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHcc-CcccccEEEEec
Q 021660 34 TPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG-AQYHNMILELNA 112 (309)
Q Consensus 34 ~~~~~~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~-~~~~~~~~~~~~ 112 (309)
.++.....||.++|+|..+.++++++++...+.+....++.||+|+|||||+|||+.+.+.+..+.+ .++...+.+++.
T Consensus 22 p~~~~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelna 101 (360)
T KOG0990|consen 22 PQSPQYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNA 101 (360)
T ss_pred CCCcccCCCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhc
Confidence 4445677899999999999999999999999999999999999999999999999999999999987 556667888999
Q ss_pred CCCcchHHHHHHHHHhhhcccc-ccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcc
Q 021660 113 SDDRGIDVVRQQIQDFASTQSF-SFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSR 191 (309)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~l~~r 191 (309)
++.++.+.++..+..+...... .|+.....+++|+||+|.+..+++++|...++....+.+|++++|...++.+.+.+|
T Consensus 102 Sd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t~n~rF~ii~n~~~ki~pa~qsR 181 (360)
T KOG0990|consen 102 SDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYTANTRFATISNPPQKIHPAQQSR 181 (360)
T ss_pred cCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHhccceEEEEeccChhhcCchhhcc
Confidence 9999999888888887766543 233345789999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcCH-----HHHHhhhCCCC
Q 021660 192 CTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITE-----EAVYLCTGNPL 266 (309)
Q Consensus 192 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~~~i~~-----~~v~~~~~~~~ 266 (309)
|..+.|.|++..+....+.+++..+....+++....++..+.||+|.++|.|+..+.....+++ +.+..+.+...
T Consensus 182 ctrfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~~~~~~~~~e~~~~~~~vy~c~g~p~ 261 (360)
T KOG0990|consen 182 CTRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQSILKKVMERKELNNPNDLVYQCKGAPQ 261 (360)
T ss_pred cccCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCCCCchhhHHHhcCCCC
Confidence 9999999999999999999999999999999999999999999999999999988876644444 44899999888
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 267 PKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
..++..+++.+...........+.++....|.+-.+++.++.
T Consensus 262 ~~dI~~I~~~il~~~~~~~~~~is~lk~~~gla~~d~i~~l~ 303 (360)
T KOG0990|consen 262 PSDIRQIIEKRMNGEDIELMLDDSELKKPKGLARQDRRAELE 303 (360)
T ss_pred hhHHHHHHHHHhcCchHHHHhhhhhhhhhhhhHHHHHHHHHH
Confidence 889999999999999988888888888777888888887764
No 51
>PRK04132 replication factor C small subunit; Provisional
Probab=99.96 E-value=1.3e-27 Score=222.58 Aligned_cols=229 Identities=41% Similarity=0.729 Sum_probs=209.7
Q ss_pred EEEEC--CCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCC
Q 021660 77 LLLYG--PPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT 154 (309)
Q Consensus 77 ~ll~G--~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~ 154 (309)
-++.| |.+.||||+|+++++++.++++...++++++++..+.+.++..+..+....+.. + .+.+|+||||+|.++
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~-~--~~~KVvIIDEaD~Lt 643 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIG-G--ASFKIIFLDEADALT 643 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcC-C--CCCEEEEEECcccCC
Confidence 56668 999999999999999998877888999999999889999998888876554331 1 146899999999999
Q ss_pred HHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 021660 155 KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG 234 (309)
Q Consensus 155 ~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g 234 (309)
.++++.|++.|++++.+++||++||...++.+++++||+.+.|.+++.+++...+...+.++|+.++++++..|++.++|
T Consensus 644 ~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~G 723 (846)
T PRK04132 644 QDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG 723 (846)
T ss_pred HHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCcCHHHHHhhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 235 DMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 235 ~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
|+|.+++.|+.++...+.||.+.+..+++......+.++++.+..++...++..+.+++...|.++.+++..+.
T Consensus 724 DlR~AIn~Lq~~~~~~~~It~~~V~~~~~~~~~~~I~~il~~~l~~~~~~ar~~l~ell~~~G~~~~~iL~~l~ 797 (846)
T PRK04132 724 DMRRAINILQAAAALDDKITDENVFLVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMH 797 (846)
T ss_pred CHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999887667899999999999998889999999999999999999999998789999999998774
No 52
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.95 E-value=3.1e-25 Score=191.47 Aligned_cols=207 Identities=18% Similarity=0.250 Sum_probs=163.5
Q ss_pred cChhhhcCCCCccccccChHHHHHHHHHHhc-----CCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCC
Q 021660 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSE-----NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115 (309)
Q Consensus 41 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~-----~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 115 (309)
..|-.+|+|.+|++++|+++.++.+..++.. ...++++|+||||+|||++++.+++++ +..+...+....
T Consensus 13 ~~~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l-----~~~~~~~~~~~~ 87 (328)
T PRK00080 13 DEIERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM-----GVNIRITSGPAL 87 (328)
T ss_pred chhhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh-----CCCeEEEecccc
Confidence 3467899999999999999999988877752 334569999999999999999999998 333333333322
Q ss_pred cchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc------------------CCceEEEE
Q 021660 116 RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT------------------KNTRFALI 177 (309)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~------------------~~~~~i~~ 177 (309)
.....+...+... ..+.+|+|||+|.++....+.|..+++... +...+|++
T Consensus 88 ~~~~~l~~~l~~l-----------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~a 156 (328)
T PRK00080 88 EKPGDLAAILTNL-----------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGA 156 (328)
T ss_pred cChHHHHHHHHhc-----------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEee
Confidence 2223333322221 146799999999999888888888887532 23567778
Q ss_pred ecCCcccchhhhcce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-----C
Q 021660 178 CNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-----Q 251 (309)
Q Consensus 178 ~~~~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~-----~ 251 (309)
++....+.+.+++|| ..+.|.+++.+++.+++++.+...++.++++++..|+++++|+||.+.+.++.+...+ +
T Consensus 157 t~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~~a~~~~~~ 236 (328)
T PRK00080 157 TTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVRDFAQVKGDG 236 (328)
T ss_pred cCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCC
Confidence 888888889999998 7799999999999999999999999999999999999999999999999998765322 5
Q ss_pred CcCHHHHHhhhC
Q 021660 252 QITEEAVYLCTG 263 (309)
Q Consensus 252 ~i~~~~v~~~~~ 263 (309)
.|+.+.+..++.
T Consensus 237 ~I~~~~v~~~l~ 248 (328)
T PRK00080 237 VITKEIADKALD 248 (328)
T ss_pred CCCHHHHHHHHH
Confidence 688888877774
No 53
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.95 E-value=4.8e-25 Score=189.55 Aligned_cols=237 Identities=21% Similarity=0.344 Sum_probs=174.4
Q ss_pred hcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCc-----c----------------
Q 021660 46 KYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ-----Y---------------- 103 (309)
Q Consensus 46 ~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~-----~---------------- 103 (309)
...|..+.+++|++++...+...+.+++.++ ++|+||+|+|||++++.+++.+.+.. .
T Consensus 16 ~~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i 95 (351)
T PRK09112 16 VPSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQI 95 (351)
T ss_pred CCCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHH
Confidence 3688899999999999999999999999888 99999999999999999999998721 0
Q ss_pred ----cccEEEEecC---------CCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcC
Q 021660 104 ----HNMILELNAS---------DDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTK 170 (309)
Q Consensus 104 ----~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~ 170 (309)
..++..+... ....++.++.....+.... ...+.+|+||||+|.++....+.|++.+++++.
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~-----~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~ 170 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTS-----GDGNWRIVIIDPADDMNRNAANAILKTLEEPPA 170 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhcc-----ccCCceEEEEEchhhcCHHHHHHHHHHHhcCCC
Confidence 1122323211 1123455554444333221 122688999999999999999999999999999
Q ss_pred CceEEEEecCCcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 021660 171 NTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS 250 (309)
Q Consensus 171 ~~~~i~~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~ 250 (309)
++.+|++++.+..+.+++++||..+.|.+++.+++..++.+.....+ ++++.+..+++.++|++|.++++++.....
T Consensus 171 ~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~~~s~G~pr~Al~ll~~~~~~- 247 (351)
T PRK09112 171 RALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQRSKGSVRKALLLLNYGGLE- 247 (351)
T ss_pred CceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHHHHcCCCHHHHHHHHhcCcHH-
Confidence 99999999999999999999999999999999999999998543333 778999999999999999999998643321
Q ss_pred CCcCHHHHHhhhC--CCChHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 021660 251 QQITEEAVYLCTG--NPLPKDIEQISYWLLNESFADSFKRISEMK 293 (309)
Q Consensus 251 ~~i~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 293 (309)
+. ..+...+. .........+.+.+.+.+....+.++.+++
T Consensus 248 --~~-~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~l 289 (351)
T PRK09112 248 --II-ATIDQLLAGSGPDARKAHKLADALSGRESEVQFDFFRDHL 289 (351)
T ss_pred --HH-HHHHHHHhhccCCcchHHHHHHHHhCCChHHHHHHHHHHH
Confidence 11 11222222 112123456666666655555554444444
No 54
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.94 E-value=1e-24 Score=187.09 Aligned_cols=232 Identities=19% Similarity=0.304 Sum_probs=177.4
Q ss_pred CccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCc---ccccEEEEec--CCCcchHHHHHH
Q 021660 51 SLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ---YHNMILELNA--SDDRGIDVVRQQ 124 (309)
Q Consensus 51 ~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~ 124 (309)
+|++++|++.+++.+.+++..++.++ ++|+||+|+|||++|+.+++.+.|.. ...++..+.. ......+.++..
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~ 81 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNI 81 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHH
Confidence 57899999999999999999998888 79999999999999999999997753 2334444443 233455677766
Q ss_pred HHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEecCCChHH
Q 021660 125 IQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVH 204 (309)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~l~~r~~~i~~~~~~~~~ 204 (309)
+..+...+. . .+++|+|||++|.++.+.++.|++.++++|+.+.+|++++.++.+.+++++||+.+.|.+++.++
T Consensus 82 ~~~~~~~p~---~--~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~ 156 (313)
T PRK05564 82 IEEVNKKPY---E--GDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEE 156 (313)
T ss_pred HHHHhcCcc---c--CCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHH
Confidence 655433221 1 26899999999999999999999999999999999999998999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcCHHHHHhhhCCCChHHHHHHHHHHhcCCHHH
Q 021660 205 VTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFAD 284 (309)
Q Consensus 205 ~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (309)
+..|+.+.+. .++++.+..++..++|+++.+...+..... .. ....++++++.+..++...
T Consensus 157 ~~~~l~~~~~----~~~~~~~~~l~~~~~g~~~~a~~~~~~~~~-------~~--------~~~~~~~~~~~l~~~~~~~ 217 (313)
T PRK05564 157 IEKFISYKYN----DIKEEEKKSAIAFSDGIPGKVEKFIEDDSL-------KN--------IRNMSLEILKDIKKSNINI 217 (313)
T ss_pred HHHHHHHHhc----CCCHHHHHHHHHHcCCCHHHHHHHhcccHH-------HH--------HHHHHHHHHHHHHcCCHHH
Confidence 9999986542 578888899999999999888766432111 00 1224556666666666666
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHh
Q 021660 285 SFKRISEMKMRKGLALVDIVREV 307 (309)
Q Consensus 285 ~~~~l~~~~~~~g~~~~~~~~~l 307 (309)
++..+..+. ..|..+..++..|
T Consensus 218 ~l~~~~~l~-~~~~~~~~~l~~l 239 (313)
T PRK05564 218 LLKYENFLI-KYKENWEEILTCI 239 (313)
T ss_pred HHHHHHHHH-HcCccHHHHHHHH
Confidence 666666665 5556665555443
No 55
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.94 E-value=5.2e-25 Score=176.29 Aligned_cols=204 Identities=16% Similarity=0.248 Sum_probs=168.0
Q ss_pred hhhcCCCCccccccChHHHHHHHHHHh-----cCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcch
Q 021660 44 VEKYRPQSLADVAAHRDIVDTIDRLTS-----ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 118 (309)
Q Consensus 44 ~~~~~p~~~~~~ig~~~~~~~l~~~~~-----~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 118 (309)
-...||+.+.+++||+++++.+.-.++ +....|+||+||||.||||||..+|+++ +..+...+.......
T Consensus 17 e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em-----gvn~k~tsGp~leK~ 91 (332)
T COG2255 17 ERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL-----GVNLKITSGPALEKP 91 (332)
T ss_pred hcccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh-----cCCeEecccccccCh
Confidence 356899999999999999998887765 3345679999999999999999999998 666666666555555
Q ss_pred HHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc------------------CCceEEEEecC
Q 021660 119 DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT------------------KNTRFALICNQ 180 (309)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~------------------~~~~~i~~~~~ 180 (309)
..+...+..+. .+.|++|||+|++++...+.|+.+|++.. +...+|.+|+.
T Consensus 92 gDlaaiLt~Le-----------~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr 160 (332)
T COG2255 92 GDLAAILTNLE-----------EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTR 160 (332)
T ss_pred hhHHHHHhcCC-----------cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccc
Confidence 55555544432 57899999999999999999999999742 23346777888
Q ss_pred Ccccchhhhcce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-----CCcC
Q 021660 181 VNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-----QQIT 254 (309)
Q Consensus 181 ~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~-----~~i~ 254 (309)
...+...|+.|| ...++.-++.+|+.+++.+.+...++.+++++...|++++.|.||-+.++|+.+--.+ ..|+
T Consensus 161 ~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRDfa~V~~~~~I~ 240 (332)
T COG2255 161 AGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLRRVRDFAQVKGDGDID 240 (332)
T ss_pred cccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHHHHHHHHHHHHhcCCccc
Confidence 889999999999 7788888999999999999999999999999999999999999999999998776543 5677
Q ss_pred HHHHHhhhC
Q 021660 255 EEAVYLCTG 263 (309)
Q Consensus 255 ~~~v~~~~~ 263 (309)
.+....++.
T Consensus 241 ~~ia~~aL~ 249 (332)
T COG2255 241 RDIADKALK 249 (332)
T ss_pred HHHHHHHHH
Confidence 776666653
No 56
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.94 E-value=2.6e-24 Score=185.97 Aligned_cols=234 Identities=25% Similarity=0.369 Sum_probs=174.5
Q ss_pred cCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCcc----------------------
Q 021660 47 YRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY---------------------- 103 (309)
Q Consensus 47 ~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~---------------------- 103 (309)
.+|..+.+++||+.+++.+.+.+.+++.+| ++|+||+|+||+++|..+++.+.|+..
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 689999999999999999999999999998 999999999999999999999976532
Q ss_pred -------cccEEEEecC---------CCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHH
Q 021660 104 -------HNMILELNAS---------DDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEK 167 (309)
Q Consensus 104 -------~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~ 167 (309)
..++..+... ....++.++.....+.... ...+++|+||||+|.++....+.|++.+++
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~-----~~~~~kVviIDead~m~~~aanaLLK~LEe 167 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTA-----AEGGWRVVIVDTADEMNANAANALLKVLEE 167 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCc-----ccCCCEEEEEechHhcCHHHHHHHHHHHhc
Confidence 1123333321 1123555555544443221 123688999999999999999999999999
Q ss_pred hcCCceEEEEecCCcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 021660 168 YTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH 247 (309)
Q Consensus 168 ~~~~~~~i~~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~ 247 (309)
++..+.+|++|+....+.+.+++||+.+.|.+++.+++..++... +...+++.+..+++.++|+++.++..++.-.
T Consensus 168 pp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~----~~~~~~~~~~~l~~~s~Gsp~~Al~ll~~~~ 243 (365)
T PRK07471 168 PPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAA----GPDLPDDPRAALAALAEGSVGRALRLAGGDG 243 (365)
T ss_pred CCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHh----cccCCHHHHHHHHHHcCCCHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999875 3445566668899999999999999885322
Q ss_pred hhcCCcCHHHHHhhhC---CCChHHHHHHHHHHhcCC----HHHHHHHHHHHH
Q 021660 248 MASQQITEEAVYLCTG---NPLPKDIEQISYWLLNES----FADSFKRISEMK 293 (309)
Q Consensus 248 ~~~~~i~~~~v~~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~ 293 (309)
.. . .+.+...+. ......+..+.+.+.+.+ +...+.++..|+
T Consensus 244 ~~---~-~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~l 292 (365)
T PRK07471 244 LA---L-YRRLTALLDTLPRLDRRALHALADAAAGRDRAARFALFLDLLDRWL 292 (365)
T ss_pred hH---H-HHHHHHHHhccccCCHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 11 1 112222222 222333466667666666 454555555555
No 57
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.93 E-value=5.4e-24 Score=182.60 Aligned_cols=198 Identities=15% Similarity=0.229 Sum_probs=154.9
Q ss_pred CCccccccChHHHHHHHHHHh-----cCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHH
Q 021660 50 QSLADVAAHRDIVDTIDRLTS-----ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQ 124 (309)
Q Consensus 50 ~~~~~~ig~~~~~~~l~~~~~-----~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (309)
++|++|+|+++.++.+..++. ....++++|+||||+|||++++.+++++. ..+.............+...
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~-----~~~~~~~~~~~~~~~~l~~~ 75 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMG-----VNLKITSGPALEKPGDLAAI 75 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhC-----CCEEEeccchhcCchhHHHH
Confidence 368899999999999998886 33455699999999999999999999983 33333333322222333333
Q ss_pred HHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc------------------CCceEEEEecCCcccch
Q 021660 125 IQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT------------------KNTRFALICNQVNKIIP 186 (309)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~------------------~~~~~i~~~~~~~~l~~ 186 (309)
+... ..+.+|+|||++.+++...+.|+.++++.. +...+|.+++....+.+
T Consensus 76 l~~~-----------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~ 144 (305)
T TIGR00635 76 LTNL-----------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTS 144 (305)
T ss_pred HHhc-----------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCH
Confidence 3221 145799999999999988888888887432 22566777788888889
Q ss_pred hhhcce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-----CCcCHHHHHh
Q 021660 187 ALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-----QQITEEAVYL 260 (309)
Q Consensus 187 ~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~-----~~i~~~~v~~ 260 (309)
.+++|| ..+.|.+++.+++.+++++.+...++.+++++++.|++.++|++|.+.+.++.+...+ ..++.+.+..
T Consensus 145 ~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~ 224 (305)
T TIGR00635 145 PLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALK 224 (305)
T ss_pred HHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHH
Confidence 999999 6789999999999999999999999999999999999999999999999998765332 4588888877
Q ss_pred hhC
Q 021660 261 CTG 263 (309)
Q Consensus 261 ~~~ 263 (309)
.+.
T Consensus 225 ~l~ 227 (305)
T TIGR00635 225 ALE 227 (305)
T ss_pred HHH
Confidence 764
No 58
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.93 E-value=8.5e-24 Score=188.31 Aligned_cols=208 Identities=25% Similarity=0.432 Sum_probs=176.8
Q ss_pred CcChhhhcCCCCccccccChHHHHHHHHHHhc--------------------------------CCCCe--EEEECCCCC
Q 021660 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSE--------------------------------NRLPH--LLLYGPPGT 85 (309)
Q Consensus 40 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~--------------------------------~~~~~--~ll~G~~G~ 85 (309)
...|.++|+|+.|.|++|.+..-+.+..|++. ++++. ++|+||||.
T Consensus 258 ~kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGl 337 (877)
T KOG1969|consen 258 DKLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGL 337 (877)
T ss_pred cceeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCC
Confidence 33799999999999999999999999988851 12222 899999999
Q ss_pred cHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHH
Q 021660 86 GKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVI 165 (309)
Q Consensus 86 GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l 165 (309)
||||||+.+|++. +..+++++.++.+....+.+.+......... +....++.+|||||||.......+.++.++
T Consensus 338 GKTTLAHViAkqa-----GYsVvEINASDeRt~~~v~~kI~~avq~~s~-l~adsrP~CLViDEIDGa~~~~Vdvilslv 411 (877)
T KOG1969|consen 338 GKTTLAHVIAKQA-----GYSVVEINASDERTAPMVKEKIENAVQNHSV-LDADSRPVCLVIDEIDGAPRAAVDVILSLV 411 (877)
T ss_pred ChhHHHHHHHHhc-----CceEEEecccccccHHHHHHHHHHHHhhccc-cccCCCcceEEEecccCCcHHHHHHHHHHH
Confidence 9999999999998 8899999999999999999999988877666 432337889999999999988889999888
Q ss_pred HHhc---------------------CCceEEEEecCCcc-cchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHH
Q 021660 166 EKYT---------------------KNTRFALICNQVNK-IIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEG 223 (309)
Q Consensus 166 ~~~~---------------------~~~~~i~~~~~~~~-l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 223 (309)
+... -.-+||++||+.+. -...|+..+.+++|.+|+..-+.+.|+.+|.++|+..+..
T Consensus 412 ~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~ 491 (877)
T KOG1969|consen 412 KATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMRADSK 491 (877)
T ss_pred HhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCCCCHH
Confidence 8311 12357788887653 3455666779999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCc
Q 021660 224 GLAALVRLCNGDMRKALNILQSTHMASQQI 253 (309)
Q Consensus 224 ~l~~i~~~~~g~~r~~~~~l~~~~~~~~~i 253 (309)
++..+.+.+.+|+|.++|.||.++...+..
T Consensus 492 aL~~L~el~~~DIRsCINtLQfLa~~~~r~ 521 (877)
T KOG1969|consen 492 ALNALCELTQNDIRSCINTLQFLASNVDRR 521 (877)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999887653
No 59
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.92 E-value=9.3e-24 Score=183.96 Aligned_cols=183 Identities=22% Similarity=0.350 Sum_probs=149.9
Q ss_pred CccccccChHHHHHHHHHHhcCC---------CCe-EEEECCCCCcHHHHHHHHHHHHccCc------------------
Q 021660 51 SLADVAAHRDIVDTIDRLTSENR---------LPH-LLLYGPPGTGKTSTILAVARKLYGAQ------------------ 102 (309)
Q Consensus 51 ~~~~~ig~~~~~~~l~~~~~~~~---------~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~------------------ 102 (309)
.|++++||+++++.|.+++..++ .++ ++|+||+|+|||++|+.+++.+.|..
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG 82 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 47899999999999999999875 556 99999999999999999999998753
Q ss_pred ccccEEEEecC-CCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCC
Q 021660 103 YHNMILELNAS-DDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQV 181 (309)
Q Consensus 103 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~ 181 (309)
...++..+.+. ...+.+.++..+......+. ..+++|+||||+|.+.+...+.|++.|+++++.+.+|++|+..
T Consensus 83 ~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~-----~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~ 157 (394)
T PRK07940 83 THPDVRVVAPEGLSIGVDEVRELVTIAARRPS-----TGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSP 157 (394)
T ss_pred CCCCEEEeccccccCCHHHHHHHHHHHHhCcc-----cCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECCh
Confidence 12233333332 23456667766655543221 1267899999999999999999999999999999999999999
Q ss_pred cccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHH
Q 021660 182 NKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNIL 243 (309)
Q Consensus 182 ~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l 243 (309)
..+.+++++||+.+.|.+|+.+++..++.+. . .++++.+..++..++|+++.++..+
T Consensus 158 ~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~---~--~~~~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 158 EDVLPTIRSRCRHVALRTPSVEAVAEVLVRR---D--GVDPETARRAARASQGHIGRARRLA 214 (394)
T ss_pred HHChHHHHhhCeEEECCCCCHHHHHHHHHHh---c--CCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 9999999999999999999999999888742 1 3678889999999999999887664
No 60
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.92 E-value=2.4e-23 Score=189.14 Aligned_cols=227 Identities=22% Similarity=0.319 Sum_probs=171.9
Q ss_pred CCcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccC---c--ccccEEEEecC
Q 021660 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA---Q--YHNMILELNAS 113 (309)
Q Consensus 39 ~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~---~--~~~~~~~~~~~ 113 (309)
-..||.++|||.+|++++|++..++.+...+......+++|+||||||||++|+.+.+..... . ....++++++.
T Consensus 51 ~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~ 130 (531)
T TIGR02902 51 LTEPLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDAT 130 (531)
T ss_pred hcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccc
Confidence 367899999999999999999999999988877777789999999999999999998764321 1 13567888875
Q ss_pred CCcc-hHHHH-HHHHH----hhhc-----------cccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHh--------
Q 021660 114 DDRG-IDVVR-QQIQD----FAST-----------QSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-------- 168 (309)
Q Consensus 114 ~~~~-~~~~~-~~~~~----~~~~-----------~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~-------- 168 (309)
.... ...+. ..+.. .... .....-..+++++|+|||++.+++..++.|++++++.
T Consensus 131 ~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~ 210 (531)
T TIGR02902 131 TARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAY 210 (531)
T ss_pred cccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeecccc
Confidence 3110 00010 00100 0000 0000111335789999999999999999999999852
Q ss_pred --------------------cCCceEEEEe-cCCcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHH
Q 021660 169 --------------------TKNTRFALIC-NQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAA 227 (309)
Q Consensus 169 --------------------~~~~~~i~~~-~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 227 (309)
+.+.++|++| +.+..+++++++||..+.|++++.+++..++++.+++.++.+++++++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~ 290 (531)
T TIGR02902 211 YNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALEL 290 (531)
T ss_pred ccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHH
Confidence 1234566554 5677899999999999999999999999999999999999999999998
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhc-----CCcCHHHHHhhhCCCC
Q 021660 228 LVRLCNGDMRKALNILQSTHMAS-----QQITEEAVYLCTGNPL 266 (309)
Q Consensus 228 i~~~~~g~~r~~~~~l~~~~~~~-----~~i~~~~v~~~~~~~~ 266 (309)
|..++. |.|.+.+.++.++..+ ..|+.+++..++....
T Consensus 291 I~~y~~-n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~~~ 333 (531)
T TIGR02902 291 IVKYAS-NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAENGN 333 (531)
T ss_pred HHHhhh-hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCCcc
Confidence 888775 8999999999887543 3599999998886543
No 61
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.92 E-value=7.1e-23 Score=173.90 Aligned_cols=187 Identities=21% Similarity=0.334 Sum_probs=147.4
Q ss_pred CccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCc-------------ccccEEEEecCC--
Q 021660 51 SLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ-------------YHNMILELNASD-- 114 (309)
Q Consensus 51 ~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~-------------~~~~~~~~~~~~-- 114 (309)
.|++++||+.+++.+.+.+..++.++ +||+||+|+||+++|..+++.+.|.. ...++..+.+..
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 47899999999999999999998766 99999999999999999999997754 122333333210
Q ss_pred ---------------------CcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCce
Q 021660 115 ---------------------DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTR 173 (309)
Q Consensus 115 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~ 173 (309)
...++.++.....+ ...+. ..+++|+|||++|.+.....+.|++.|++++ ++.
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l-~~~p~----~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~ 155 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFL-SRPPL----EAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGT 155 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHHHHHHH-ccCcc----cCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCe
Confidence 11233444433333 22221 1268999999999999999999999999999 889
Q ss_pred EEEEecCCcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHH
Q 021660 174 FALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQST 246 (309)
Q Consensus 174 ~i~~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~ 246 (309)
||++++....+.+++++||+.+.|.+++.+++.++|.+.....+ .+.....++..++|+++.+++.++..
T Consensus 156 fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~---~~~~~~~l~~~a~Gs~~~al~~l~~~ 225 (314)
T PRK07399 156 LILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI---LNINFPELLALAQGSPGAAIANIEQL 225 (314)
T ss_pred EEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc---chhHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998643222 12235788999999999999988754
No 62
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.91 E-value=2.6e-22 Score=171.71 Aligned_cols=177 Identities=28% Similarity=0.382 Sum_probs=148.9
Q ss_pred ChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCc-------------------ccccEEEEecC---C
Q 021660 58 HRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ-------------------YHNMILELNAS---D 114 (309)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~-------------------~~~~~~~~~~~---~ 114 (309)
+....+.+.+.+..++.+| ++|+||+|+||+++|..+++.+.|.. ...++..+.+. .
T Consensus 7 l~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~ 86 (334)
T PRK07993 7 LRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKS 86 (334)
T ss_pred ChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccc
Confidence 4478888999999998888 89999999999999999999998742 23455555443 2
Q ss_pred CcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeE
Q 021660 115 DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTR 194 (309)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~l~~r~~~ 194 (309)
..+++.++.....+...... .+.+|+|||++|.|..+..|.|++.||+||+++.||++|+.+..+.++++|||+.
T Consensus 87 ~I~idqiR~l~~~~~~~~~~-----g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~ 161 (334)
T PRK07993 87 SLGVDAVREVTEKLYEHARL-----GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRL 161 (334)
T ss_pred cCCHHHHHHHHHHHhhcccc-----CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcccc
Confidence 35677888776666544332 2689999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHH
Q 021660 195 FRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQ 244 (309)
Q Consensus 195 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~ 244 (309)
+.|++++.+++..+|... ..++++.+..++..++|+++.++..++
T Consensus 162 ~~~~~~~~~~~~~~L~~~-----~~~~~~~a~~~~~la~G~~~~Al~l~~ 206 (334)
T PRK07993 162 HYLAPPPEQYALTWLSRE-----VTMSQDALLAALRLSAGAPGAALALLQ 206 (334)
T ss_pred ccCCCCCHHHHHHHHHHc-----cCCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 999999999999998752 247777788889999999999988874
No 63
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.90 E-value=1.1e-21 Score=167.56 Aligned_cols=170 Identities=26% Similarity=0.390 Sum_probs=137.7
Q ss_pred HHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCc-------------------ccccEEEEecC---CCcchHHHH
Q 021660 66 DRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ-------------------YHNMILELNAS---DDRGIDVVR 122 (309)
Q Consensus 66 ~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~-------------------~~~~~~~~~~~---~~~~~~~~~ 122 (309)
.+++..++.+| ++|+||+|+||+++|+.+++.+.|+. ...++..+... ...+++.++
T Consensus 13 ~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR 92 (328)
T PRK05707 13 QQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVR 92 (328)
T ss_pred HHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHH
Confidence 33445577777 99999999999999999999998753 23345555443 235678888
Q ss_pred HHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEecCCCh
Q 021660 123 QQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEP 202 (309)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~l~~r~~~i~~~~~~~ 202 (309)
+....+...... .+++|+|||++|.++.+..+.|++.+|++++++.||++|+....++++++|||+.+.|.+++.
T Consensus 93 ~l~~~~~~~~~~-----~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~ 167 (328)
T PRK05707 93 ELVSFVVQTAQL-----GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSN 167 (328)
T ss_pred HHHHHHhhcccc-----CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCH
Confidence 766665543322 268899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHH
Q 021660 203 VHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQ 244 (309)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~ 244 (309)
+++..++.... ...+++....++..++|+|..++..++
T Consensus 168 ~~~~~~L~~~~----~~~~~~~~~~~l~la~Gsp~~A~~l~~ 205 (328)
T PRK05707 168 EESLQWLQQAL----PESDERERIELLTLAGGSPLRALQLHE 205 (328)
T ss_pred HHHHHHHHHhc----ccCChHHHHHHHHHcCCCHHHHHHHHC
Confidence 99999998653 134666677888999999999987764
No 64
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.90 E-value=3.2e-22 Score=159.33 Aligned_cols=166 Identities=29% Similarity=0.473 Sum_probs=132.3
Q ss_pred HHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCc-------------------ccccEEEEecCC-CcchHHH
Q 021660 63 DTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ-------------------YHNMILELNASD-DRGIDVV 121 (309)
Q Consensus 63 ~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~-------------------~~~~~~~~~~~~-~~~~~~~ 121 (309)
+.+.+.+..++.++ ++|+||+|+|||++++.+++.+.+.. ...++..+.... ..+.+.+
T Consensus 2 ~~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQV 81 (188)
T ss_pred hHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHH
Confidence 35677788887776 99999999999999999999997641 111223332221 2345566
Q ss_pred HHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEecCCC
Q 021660 122 RQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLE 201 (309)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~l~~r~~~i~~~~~~ 201 (309)
+..+..+..... ..+++++||||+|.+..+.++.|++.++++++.+.+|++++....+.+++.+|+..++|.+++
T Consensus 82 ~~i~~~~~~~~~-----~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~ 156 (188)
T TIGR00678 82 RELVEFLSRTPQ-----ESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLS 156 (188)
T ss_pred HHHHHHHccCcc-----cCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCC
Confidence 655544432221 126889999999999999999999999999999999999988889999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHH
Q 021660 202 PVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKA 239 (309)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~ 239 (309)
.+++..|+.+. | +++++++.+++.++|++|.+
T Consensus 157 ~~~~~~~l~~~----g--i~~~~~~~i~~~~~g~~r~~ 188 (188)
T TIGR00678 157 EEALLQWLIRQ----G--ISEEAAELLLALAGGSPGAA 188 (188)
T ss_pred HHHHHHHHHHc----C--CCHHHHHHHHHHcCCCcccC
Confidence 99999999876 4 78999999999999999864
No 65
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.90 E-value=9.1e-22 Score=161.52 Aligned_cols=198 Identities=15% Similarity=0.211 Sum_probs=149.5
Q ss_pred Cccccc--cChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHh
Q 021660 51 SLADVA--AHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDF 128 (309)
Q Consensus 51 ~~~~~i--g~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (309)
+|++++ .+..++..+.++......++++|+||+|+|||++++++++++...+....+..++..... ....+..+
T Consensus 20 ~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~----~~~~~~~~ 95 (235)
T PRK08084 20 TFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF----VPEVLEGM 95 (235)
T ss_pred CccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh----hHHHHHHh
Confidence 466666 367788888888776666679999999999999999999988655555555554432211 11111111
Q ss_pred hhccccccCCCCccEEEEEeCCCCCC--HHHHHHHHHHHHHhcC--CceEEEEecCCc----ccchhhhcce---eEEEe
Q 021660 129 ASTQSFSFGVKASVKLVLLDEADAMT--KDAQFALRRVIEKYTK--NTRFALICNQVN----KIIPALQSRC---TRFRF 197 (309)
Q Consensus 129 ~~~~~~~~~~~~~~~lliiDe~~~l~--~~~~~~l~~~l~~~~~--~~~~i~~~~~~~----~l~~~l~~r~---~~i~~ 197 (309)
. ...+|+|||++.+. +.....|+.+++.... ...+|++++..+ .+.+.+.+|+ .++.+
T Consensus 96 ~-----------~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l 164 (235)
T PRK08084 96 E-----------QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKL 164 (235)
T ss_pred h-----------hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeee
Confidence 1 23589999999986 3446678788876532 346777776443 2578999998 89999
Q ss_pred cCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhh----cCCcCHHHHHhhhC
Q 021660 198 APLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA----SQQITEEAVYLCTG 263 (309)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~----~~~i~~~~v~~~~~ 263 (309)
.+|+.+++..++++++...|+.++++++++|+++++||+|.+.+.++.+... ...||.+.+++++.
T Consensus 165 ~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~it~~~~k~~l~ 234 (235)
T PRK08084 165 QPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 234 (235)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHc
Confidence 9999999999999989999999999999999999999999999999887532 36788888887653
No 66
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.90 E-value=9.9e-22 Score=168.94 Aligned_cols=181 Identities=27% Similarity=0.444 Sum_probs=145.0
Q ss_pred cccccc-ChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCcc-------------------cccEEEE
Q 021660 52 LADVAA-HRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY-------------------HNMILEL 110 (309)
Q Consensus 52 ~~~~ig-~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~-------------------~~~~~~~ 110 (309)
++.++| |+.+++.+.+.+..++.+| ++|+||+|+||+++++.+++.+.|... ..++..+
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i 83 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLV 83 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEe
Confidence 567888 9999999999999999888 799999999999999999999977531 2233333
Q ss_pred ecC-CCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhh
Q 021660 111 NAS-DDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQ 189 (309)
Q Consensus 111 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~l~ 189 (309)
... .....+.++..+..+..... ..+++|+||||++.++.+..+.|++.+|++|+.+.+|++++...++.++++
T Consensus 84 ~~~~~~i~id~ir~l~~~~~~~~~-----~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIr 158 (329)
T PRK08058 84 APDGQSIKKDQIRYLKEEFSKSGV-----ESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTIL 158 (329)
T ss_pred ccccccCCHHHHHHHHHHHhhCCc-----ccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHH
Confidence 222 22455667766665543321 126899999999999999999999999999999999999999999999999
Q ss_pred cceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHH
Q 021660 190 SRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQ 244 (309)
Q Consensus 190 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~ 244 (309)
+||..++|.+++.+++..+++. +| ++++....++.. .|+++.++..++
T Consensus 159 SRc~~i~~~~~~~~~~~~~L~~----~g--i~~~~~~~l~~~-~g~~~~A~~l~~ 206 (329)
T PRK08058 159 SRCQVVEFRPLPPESLIQRLQE----EG--ISESLATLLAGL-TNSVEEALALSE 206 (329)
T ss_pred hhceeeeCCCCCHHHHHHHHHH----cC--CChHHHHHHHHH-cCCHHHHHHHhc
Confidence 9999999999999999888864 34 566666666655 478998887764
No 67
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.89 E-value=4.7e-21 Score=162.28 Aligned_cols=177 Identities=23% Similarity=0.296 Sum_probs=145.2
Q ss_pred ChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCc-------------------ccccEEEEec--CCC
Q 021660 58 HRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ-------------------YHNMILELNA--SDD 115 (309)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~-------------------~~~~~~~~~~--~~~ 115 (309)
+....+.+.+.+..++.+| ++|+||+|+||+++|+.+++.+.|.. ...++..+.. ...
T Consensus 7 ~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~ 86 (325)
T PRK06871 7 LQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKD 86 (325)
T ss_pred hHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCC
Confidence 4578888999999998888 89999999999999999999998743 2334555543 234
Q ss_pred cchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEE
Q 021660 116 RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRF 195 (309)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~l~~r~~~i 195 (309)
.+++.++.....+...+.. .+.+|+|||++|.++.+..+.|++.+|++|+++.||++|+....++++++|||+.+
T Consensus 87 I~id~iR~l~~~~~~~~~~-----g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~ 161 (325)
T PRK06871 87 IGVDQVREINEKVSQHAQQ-----GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTW 161 (325)
T ss_pred CCHHHHHHHHHHHhhcccc-----CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEE
Confidence 5677887766655443322 26899999999999999999999999999999999999999999999999999999
Q ss_pred EecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHH
Q 021660 196 RFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQ 244 (309)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~ 244 (309)
.|.+++.+++.++|.... ..+...+..++..++|.+..++..++
T Consensus 162 ~~~~~~~~~~~~~L~~~~-----~~~~~~~~~~~~l~~g~p~~A~~~~~ 205 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQS-----SAEISEILTALRINYGRPLLALTFLE 205 (325)
T ss_pred eCCCCCHHHHHHHHHHHh-----ccChHHHHHHHHHcCCCHHHHHHHhh
Confidence 999999999999998753 23444566778889999998887764
No 68
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.89 E-value=4.6e-21 Score=161.95 Aligned_cols=174 Identities=22% Similarity=0.321 Sum_probs=142.0
Q ss_pred ChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCc------------------ccccEEEEecC---CC
Q 021660 58 HRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ------------------YHNMILELNAS---DD 115 (309)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~------------------~~~~~~~~~~~---~~ 115 (309)
+....+.+.+.+..++.+| ++|+||.|+||+++|..+++.+.|.. ...++..+.+. ..
T Consensus 8 l~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~ 87 (319)
T PRK06090 8 LVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKS 87 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCc
Confidence 4578889999999999888 99999999999999999999997753 23455555543 23
Q ss_pred cchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEE
Q 021660 116 RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRF 195 (309)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~l~~r~~~i 195 (309)
..++.++........... ..+.+|+|||++|.++.+..|.|++.+|++|+++.||++|+.+..+.++++|||+.+
T Consensus 88 I~vdqiR~l~~~~~~~~~-----~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~ 162 (319)
T PRK06090 88 ITVEQIRQCNRLAQESSQ-----LNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQW 162 (319)
T ss_pred CCHHHHHHHHHHHhhCcc-----cCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeE
Confidence 566777765444433222 226899999999999999999999999999999999999999999999999999999
Q ss_pred EecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHH
Q 021660 196 RFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQ 244 (309)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~ 244 (309)
.|.+|+.+++.+++... ++. ....+++.++|+|..++..++
T Consensus 163 ~~~~~~~~~~~~~L~~~----~~~----~~~~~l~l~~G~p~~A~~~~~ 203 (319)
T PRK06090 163 VVTPPSTAQAMQWLKGQ----GIT----VPAYALKLNMGSPLKTLAMMK 203 (319)
T ss_pred eCCCCCHHHHHHHHHHc----CCc----hHHHHHHHcCCCHHHHHHHhC
Confidence 99999999999998653 433 235678899999999988764
No 69
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.89 E-value=1.4e-21 Score=169.45 Aligned_cols=184 Identities=40% Similarity=0.630 Sum_probs=150.8
Q ss_pred ccccChHHHHHHHHHHh-cCCCCe-EEEECCCCCcHHHHHHHHHHHHccCc-------------------ccccEEEEec
Q 021660 54 DVAAHRDIVDTIDRLTS-ENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ-------------------YHNMILELNA 112 (309)
Q Consensus 54 ~~ig~~~~~~~l~~~~~-~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~-------------------~~~~~~~~~~ 112 (309)
++++++.....+..+.. .++.++ ++|+||||+|||+++.++++.+.+.. ....+.++++
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 57888888888888877 667888 99999999999999999999998765 3578899999
Q ss_pred CCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcce
Q 021660 113 SDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRC 192 (309)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~l~~r~ 192 (309)
.+....+.....++.+...... .+...+.++++|||+|.+..+.++.+++.++.++.++++|++||....+.+.+++||
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~-~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc 160 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSE-SPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRC 160 (325)
T ss_pred cccCCCcchHHHHHHHHHHhcc-CCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhcc
Confidence 8876644344445554443333 221236899999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 021660 193 TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA 249 (309)
Q Consensus 193 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~ 249 (309)
..+.|.+++......+.+ ++.+..+++.+.|++|.+++.++..+..
T Consensus 161 ~~i~f~~~~~~~~i~~~e-----------~~~l~~i~~~~~gd~r~~i~~lq~~~~~ 206 (325)
T COG0470 161 QRIRFKPPSRLEAIAWLE-----------DQGLEEIAAVAEGDARKAINPLQALAAL 206 (325)
T ss_pred eeeecCCchHHHHHHHhh-----------ccchhHHHHHHHHHHHcCCCHHHHHHHh
Confidence 999999855444433333 6778999999999999999999988875
No 70
>PRK06893 DNA replication initiation factor; Validated
Probab=99.88 E-value=4.9e-21 Score=156.69 Aligned_cols=201 Identities=17% Similarity=0.262 Sum_probs=142.6
Q ss_pred CCCCccccccChHHH--HHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHH
Q 021660 48 RPQSLADVAAHRDIV--DTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQI 125 (309)
Q Consensus 48 ~p~~~~~~ig~~~~~--~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (309)
.+.+|+++++++... ..+.+.......+.++|+||||+|||+|++++++++...+....++..+...... ...+
T Consensus 11 ~~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~----~~~~ 86 (229)
T PRK06893 11 DDETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFS----PAVL 86 (229)
T ss_pred CcccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhh----HHHH
Confidence 345788998765442 2233333333345589999999999999999999986666555555543221111 1111
Q ss_pred HHhhhccccccCCCCccEEEEEeCCCCCC--HHHHHHHHHHHHHhcC-Cce-EEEEecCCc----ccchhhhccee---E
Q 021660 126 QDFASTQSFSFGVKASVKLVLLDEADAMT--KDAQFALRRVIEKYTK-NTR-FALICNQVN----KIIPALQSRCT---R 194 (309)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~lliiDe~~~l~--~~~~~~l~~~l~~~~~-~~~-~i~~~~~~~----~l~~~l~~r~~---~ 194 (309)
..+ .+..+|+|||++.+. ......|+.+++.... ... +|++++... ...+.+.+|+. .
T Consensus 87 ~~~-----------~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~ 155 (229)
T PRK06893 87 ENL-----------EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEI 155 (229)
T ss_pred hhc-----------ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCe
Confidence 111 145799999999875 3345578888886543 333 455555432 23478999874 8
Q ss_pred EEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhh----cCCcCHHHHHhhhC
Q 021660 195 FRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA----SQQITEEAVYLCTG 263 (309)
Q Consensus 195 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~----~~~i~~~~v~~~~~ 263 (309)
+.+.+|+.++..+++++.+...++.++++++++|+++++||+|.+.+.++.+... ...+|...+++.+.
T Consensus 156 ~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~it~~~v~~~L~ 228 (229)
T PRK06893 156 YQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALDLLDKASLQAQRKLTIPFVKEILG 228 (229)
T ss_pred eeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999877532 24688888887653
No 71
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.88 E-value=1.3e-20 Score=159.35 Aligned_cols=176 Identities=25% Similarity=0.335 Sum_probs=142.6
Q ss_pred ChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCcc----------------cccEEEEe--cCC----
Q 021660 58 HRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY----------------HNMILELN--ASD---- 114 (309)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~----------------~~~~~~~~--~~~---- 114 (309)
+....+.+...+..++.+| ++|+||+|+||+++|..+++.+.|++. ..++..+. +..
T Consensus 9 ~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k 88 (319)
T PRK08769 9 QQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDK 88 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCccccc
Confidence 5588999999999999998 999999999999999999999987541 23344442 211
Q ss_pred ---CcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcc
Q 021660 115 ---DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSR 191 (309)
Q Consensus 115 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~l~~r 191 (309)
...++.+++....+...... .+.+|+|||++|.++.+..|.|++.+|++++++.||++++....+.++++||
T Consensus 89 ~~~~I~idqIR~l~~~~~~~p~~-----g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSR 163 (319)
T PRK08769 89 LRTEIVIEQVREISQKLALTPQY-----GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSR 163 (319)
T ss_pred ccccccHHHHHHHHHHHhhCccc-----CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhh
Confidence 13455666555544333221 2689999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHH
Q 021660 192 CTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQ 244 (309)
Q Consensus 192 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~ 244 (309)
|+.+.|.+|+.+++..||... .+++.....++..++|.|..++..++
T Consensus 164 Cq~i~~~~~~~~~~~~~L~~~------~~~~~~a~~~~~l~~G~p~~A~~~~~ 210 (319)
T PRK08769 164 CQRLEFKLPPAHEALAWLLAQ------GVSERAAQEALDAARGHPGLAAQWLR 210 (319)
T ss_pred heEeeCCCcCHHHHHHHHHHc------CCChHHHHHHHHHcCCCHHHHHHHhc
Confidence 999999999999999999752 35666677889999999999987763
No 72
>PRK08727 hypothetical protein; Validated
Probab=99.88 E-value=1.8e-20 Score=153.61 Aligned_cols=199 Identities=21% Similarity=0.319 Sum_probs=143.9
Q ss_pred CccccccChH-HHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhh
Q 021660 51 SLADVAAHRD-IVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFA 129 (309)
Q Consensus 51 ~~~~~ig~~~-~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (309)
+|+.|++.+. .+..+..+..+.....++|+||+|+|||+++.+++.++...+....++.+.... ..+...+..+.
T Consensus 17 ~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~----~~~~~~~~~l~ 92 (233)
T PRK08727 17 RFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA----GRLRDALEALE 92 (233)
T ss_pred ChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh----hhHHHHHHHHh
Confidence 5777776543 344444444333334499999999999999999999986666554554432211 11222222211
Q ss_pred hccccccCCCCccEEEEEeCCCCCC--HHHHHHHHHHHHHhc-CCceEEEEecCCc----ccchhhhcc---eeEEEecC
Q 021660 130 STQSFSFGVKASVKLVLLDEADAMT--KDAQFALRRVIEKYT-KNTRFALICNQVN----KIIPALQSR---CTRFRFAP 199 (309)
Q Consensus 130 ~~~~~~~~~~~~~~lliiDe~~~l~--~~~~~~l~~~l~~~~-~~~~~i~~~~~~~----~l~~~l~~r---~~~i~~~~ 199 (309)
+..+|+|||++.+. +.....++++++... ....+|++++... .+.+.+.+| +..+.|++
T Consensus 93 -----------~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~ 161 (233)
T PRK08727 93 -----------GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPV 161 (233)
T ss_pred -----------cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecC
Confidence 35699999999886 344567888887643 3445888876543 346889999 68899999
Q ss_pred CChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHh----hcCCcCHHHHHhhhCC
Q 021660 200 LEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM----ASQQITEEAVYLCTGN 264 (309)
Q Consensus 200 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~----~~~~i~~~~v~~~~~~ 264 (309)
|+.+++..++++++...++.++++++++|+++++|++|.+++.|+.+.. ....||.+.+++.+..
T Consensus 162 ~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~l~~L~~l~~~~~~~~~~it~~~~~~~l~~ 230 (233)
T PRK08727 162 LDDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGLVALLDRLDRESLAAKRRVTVPFLRRVLEE 230 (233)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999987753 2256888888777643
No 73
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.87 E-value=7.7e-20 Score=155.99 Aligned_cols=216 Identities=21% Similarity=0.261 Sum_probs=149.2
Q ss_pred hHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCcc--------------------cccEEEEecC----
Q 021660 59 RDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY--------------------HNMILELNAS---- 113 (309)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~--------------------~~~~~~~~~~---- 113 (309)
....+.+... .++.++ ++|+||+|+||+++|+.+++.+.|.+. ..++..+...
T Consensus 7 ~~~~~~l~~~--~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~ 84 (342)
T PRK06964 7 TDDWNRLQAL--RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAA 84 (342)
T ss_pred HHHHHHHHHh--cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccc
Confidence 3566666664 345566 999999999999999999999988542 1233333221
Q ss_pred -------------------------CCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHh
Q 021660 114 -------------------------DDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY 168 (309)
Q Consensus 114 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~ 168 (309)
....++.++.....+.... ...+.+|+|||++|.+..+..+.|++.+|++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~-----~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEP 159 (342)
T PRK06964 85 EAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGT-----HRGGARVVVLYPAEALNVAAANALLKTLEEP 159 (342)
T ss_pred cccccccccccchhhcccccccccccccCHHHHHHHHHHhccCC-----ccCCceEEEEechhhcCHHHHHHHHHHhcCC
Confidence 1234566666554433221 1236899999999999999999999999999
Q ss_pred cCCceEEEEecCCcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 021660 169 TKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM 248 (309)
Q Consensus 169 ~~~~~~i~~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~ 248 (309)
++++.||++|+..+.++++++|||+.+.|.+++.+++..+|... + +++. +.++..++|++..++..++.-..
T Consensus 160 p~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~----~--~~~~--~~~l~~~~Gsp~~Al~~~~~~~~ 231 (342)
T PRK06964 160 PPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ----G--VADA--DALLAEAGGAPLAALALASDENR 231 (342)
T ss_pred CcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc----C--CChH--HHHHHHcCCCHHHHHHHHCCChH
Confidence 99999999999999999999999999999999999999999764 3 3332 34577889999999887632110
Q ss_pred hcCCcCHHHHHhhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 021660 249 ASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMK 293 (309)
Q Consensus 249 ~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 293 (309)
-..+.+...+..........+.+.+.+.+....+.++..|+
T Consensus 232 ----~~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~l~~l~~~l 272 (342)
T PRK06964 232 ----PLRDWTLGQLAAGAACDAFACAETLQKLPVPAVLGWLQRWL 272 (342)
T ss_pred ----HHHHHHHHHHhccCchhHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 01111222222223334455556665555555555554444
No 74
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.87 E-value=1.7e-20 Score=154.00 Aligned_cols=199 Identities=16% Similarity=0.253 Sum_probs=147.3
Q ss_pred CCCCcccccc--ChHHHHHHHHHHhcC-CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHH
Q 021660 48 RPQSLADVAA--HRDIVDTIDRLTSEN-RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQ 124 (309)
Q Consensus 48 ~p~~~~~~ig--~~~~~~~l~~~~~~~-~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (309)
+|.+|+++++ +...+..+..+.... ...+++|+||+|+|||+++++++++....+.... .+++.... ..
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~--~i~~~~~~------~~ 84 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNAR--YLDAASPL------LA 84 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEE--EEehHHhH------HH
Confidence 3456888773 466777888877633 3345999999999999999999998755444433 33433211 11
Q ss_pred HHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCc--eEEEEecCCc---ccchhhhcce---eEEE
Q 021660 125 IQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNT--RFALICNQVN---KIIPALQSRC---TRFR 196 (309)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~--~~i~~~~~~~---~l~~~l~~r~---~~i~ 196 (309)
+. +.. ...+|+|||++.+....+..|+.+++...... .+|++++..+ .+.+.+.+|+ ..+.
T Consensus 85 ~~---------~~~--~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~ 153 (227)
T PRK08903 85 FD---------FDP--EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYE 153 (227)
T ss_pred Hh---------hcc--cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEE
Confidence 10 111 45789999999999888889999998654333 3555554322 2446677775 7899
Q ss_pred ecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc----CCcCHHHHHhhhCCC
Q 021660 197 FAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS----QQITEEAVYLCTGNP 265 (309)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~----~~i~~~~v~~~~~~~ 265 (309)
++|++.++...++.+.+.+.++.+++++++.+++.++||++.+.+.++.+...+ ..||...+++++..+
T Consensus 154 l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l~~~~~~~~~~i~~~~~~~~l~~~ 226 (227)
T PRK08903 154 LKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQKRPVTLPLLREMLAQP 226 (227)
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999998776433 579999998887644
No 75
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.87 E-value=7.5e-21 Score=173.54 Aligned_cols=212 Identities=22% Similarity=0.397 Sum_probs=140.0
Q ss_pred CCCcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-----EEEECCCCCcHHHHHHHHHHHHccCcccc-cEE--E
Q 021660 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-----LLLYGPPGTGKTSTILAVARKLYGAQYHN-MIL--E 109 (309)
Q Consensus 38 ~~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-----~ll~G~~G~GKT~l~~~l~~~~~~~~~~~-~~~--~ 109 (309)
....+|.++|+|.++++++|+++.++.+..++.....+. ++|+||+|+|||++++.+++.+....... ..+ .
T Consensus 69 ~~~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~ 148 (637)
T TIGR00602 69 DGNEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPD 148 (637)
T ss_pred cccCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhc
Confidence 345789999999999999999999999999987653322 99999999999999999999874321110 000 0
Q ss_pred EecCC--------------CcchHHHHHHHHHhhhcccc-ccCCCCccEEEEEeCCCCCCHHHHHHHHHHHH-Hh--cCC
Q 021660 110 LNASD--------------DRGIDVVRQQIQDFASTQSF-SFGVKASVKLVLLDEADAMTKDAQFALRRVIE-KY--TKN 171 (309)
Q Consensus 110 ~~~~~--------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~-~~--~~~ 171 (309)
..... ......+...+......... .......+.||+|||++.+.......+..++. .. ...
T Consensus 149 ~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~ 228 (637)
T TIGR00602 149 FQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGR 228 (637)
T ss_pred ccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCC
Confidence 00000 01122222222222111000 00012367899999997766433333444443 11 235
Q ss_pred ceEEEEecCCcc---------------cchhhhc--ceeEEEecCCChHHHHHHHHHHHHHcCCC------C-CHHHHHH
Q 021660 172 TRFALICNQVNK---------------IIPALQS--RCTRFRFAPLEPVHVTERLKHVIEAEGLD------V-TEGGLAA 227 (309)
Q Consensus 172 ~~~i~~~~~~~~---------------l~~~l~~--r~~~i~~~~~~~~~~~~~l~~~~~~~~~~------~-~~~~l~~ 227 (309)
+++|+++++... +.+.+.+ |+.+|.|.|++..++.+.|.+++..++.. + +++++..
T Consensus 229 ~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~ 308 (637)
T TIGR00602 229 CPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVEL 308 (637)
T ss_pred ceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHH
Confidence 566776653211 2257766 56889999999999999999999876432 2 4689999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhh
Q 021660 228 LVRLCNGDMRKALNILQSTHMA 249 (309)
Q Consensus 228 i~~~~~g~~r~~~~~l~~~~~~ 249 (309)
|+..+.||+|.|++.|+.++..
T Consensus 309 I~~~s~GDiRsAIn~LQf~~~~ 330 (637)
T TIGR00602 309 LCQGCSGDIRSAINSLQFSSSK 330 (637)
T ss_pred HHHhCCChHHHHHHHHHHHHhc
Confidence 9999999999999999998654
No 76
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.87 E-value=1.3e-20 Score=149.18 Aligned_cols=179 Identities=23% Similarity=0.248 Sum_probs=134.5
Q ss_pred hcCCCCccccccChHHHHHHH---HHHhc------CCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCc
Q 021660 46 KYRPQSLADVAAHRDIVDTID---RLTSE------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR 116 (309)
Q Consensus 46 ~~~p~~~~~~ig~~~~~~~l~---~~~~~------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 116 (309)
-..-..++|+|||+++++... +++.+ ..+.++|||||||||||++|++++++. ...+..+..+...
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~-----kvp~l~vkat~li 188 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA-----KVPLLLVKATELI 188 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc-----CCceEEechHHHH
Confidence 344457999999999988544 44443 356679999999999999999999997 7777777776533
Q ss_pred ch--HHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCC------------HHHHHHHHHHHHHhc--CCceEEEEecC
Q 021660 117 GI--DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT------------KDAQFALRRVIEKYT--KNTRFALICNQ 180 (309)
Q Consensus 117 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~------------~~~~~~l~~~l~~~~--~~~~~i~~~~~ 180 (309)
+. ..-...+.++.+... +..+++++|||+|.+. .+..++|+.-|+... ..++.|.+||.
T Consensus 189 GehVGdgar~Ihely~rA~-----~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~ 263 (368)
T COG1223 189 GEHVGDGARRIHELYERAR-----KAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNR 263 (368)
T ss_pred HHHhhhHHHHHHHHHHHHH-----hcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCC
Confidence 21 122223333332211 1257899999999875 234567777777544 35677788899
Q ss_pred Ccccchhhhcce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC
Q 021660 181 VNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGD 235 (309)
Q Consensus 181 ~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~ 235 (309)
+..+++++++|| ..|+|.-|+.+|..++++..++..-++++.. ++++++.++|-
T Consensus 264 p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g~ 318 (368)
T COG1223 264 PELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKGM 318 (368)
T ss_pred hhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhCCC
Confidence 999999999999 8899999999999999999999988888777 88999998763
No 77
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.86 E-value=6.2e-20 Score=153.46 Aligned_cols=189 Identities=19% Similarity=0.247 Sum_probs=132.7
Q ss_pred ccccccChHHHHHHHHHHh---------------cCCCCeEEEECCCCCcHHHHHHHHHHHHccCc--ccccEEEEecCC
Q 021660 52 LADVAAHRDIVDTIDRLTS---------------ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ--YHNMILELNASD 114 (309)
Q Consensus 52 ~~~~ig~~~~~~~l~~~~~---------------~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~--~~~~~~~~~~~~ 114 (309)
+.+++|.+.+++.+..+.. .....+++|+||||||||++|+.+++.+...+ ....++.+++.+
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 5679999999887765432 11334599999999999999999999874333 122445544433
Q ss_pred Ccch--HHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCC--------HHHHHHHHHHHHHhcCCceEEEEecCC---
Q 021660 115 DRGI--DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT--------KDAQFALRRVIEKYTKNTRFALICNQV--- 181 (309)
Q Consensus 115 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~--------~~~~~~l~~~l~~~~~~~~~i~~~~~~--- 181 (309)
..+. ......+...... +.+.+|+|||+|.+. .+..+.|+..+++.....++|+++...
T Consensus 85 l~~~~~g~~~~~~~~~~~~--------a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~ 156 (261)
T TIGR02881 85 LVGEYIGHTAQKTREVIKK--------ALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMD 156 (261)
T ss_pred hhhhhccchHHHHHHHHHh--------ccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhH
Confidence 2110 0001111222111 134699999999876 345677888888766566666665332
Q ss_pred --cccchhhhcce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh----------cCCHHHHHHHHHHHHh
Q 021660 182 --NKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLC----------NGDMRKALNILQSTHM 248 (309)
Q Consensus 182 --~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~----------~g~~r~~~~~l~~~~~ 248 (309)
..+.+.+.+|| ..++|++++.+++.+++++++...+..++++++..+++.. .||.|.+.|.++.+..
T Consensus 157 ~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~ 236 (261)
T TIGR02881 157 YFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIR 236 (261)
T ss_pred HHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHH
Confidence 23568899999 7799999999999999999999999999999999886653 5899999999988653
No 78
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.85 E-value=7.1e-20 Score=150.42 Aligned_cols=199 Identities=19% Similarity=0.262 Sum_probs=144.5
Q ss_pred CCCcccccc--ChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHH
Q 021660 49 PQSLADVAA--HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQ 126 (309)
Q Consensus 49 p~~~~~~ig--~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (309)
+.+|++++. +...+..+++++......+++|+||+|||||++++.+++.....+. .+..+++..... .....+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~--~~~~i~~~~~~~--~~~~~~~ 86 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGK--SAIYLPLAELAQ--ADPEVLE 86 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCC--cEEEEeHHHHHH--hHHHHHh
Confidence 345666763 6678999999877666667999999999999999999998754433 344444433211 1111111
Q ss_pred HhhhccccccCCCCccEEEEEeCCCCCCHHH--HHHHHHHHHHhc-CCceEEEEecCCc-c--cc-hhhhcce---eEEE
Q 021660 127 DFASTQSFSFGVKASVKLVLLDEADAMTKDA--QFALRRVIEKYT-KNTRFALICNQVN-K--II-PALQSRC---TRFR 196 (309)
Q Consensus 127 ~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~--~~~l~~~l~~~~-~~~~~i~~~~~~~-~--l~-~~l~~r~---~~i~ 196 (309)
.. ....+|+|||++.+.... ++.|..+++... ....+|++++... . .. +.+.+|+ ..+.
T Consensus 87 ~~-----------~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~ 155 (226)
T TIGR03420 87 GL-----------EQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQ 155 (226)
T ss_pred hc-----------ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEe
Confidence 11 134699999999997633 778888887643 2346666665432 2 22 6677775 5799
Q ss_pred ecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhh----cCCcCHHHHHhhh
Q 021660 197 FAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA----SQQITEEAVYLCT 262 (309)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~----~~~i~~~~v~~~~ 262 (309)
+++++.++...+++.++.+.++.+++++++.|++.++||+|.+.+.++.+... ++.||.+.+.+++
T Consensus 156 l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~~~~~~~~~~~i~~~~~~~~~ 225 (226)
T TIGR03420 156 LPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKRKITIPFVKEVL 225 (226)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHh
Confidence 99999999999999998888999999999999999999999999998776542 2568888887664
No 79
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.85 E-value=2.9e-19 Score=157.29 Aligned_cols=222 Identities=18% Similarity=0.258 Sum_probs=149.0
Q ss_pred cChhhhcCCCCccccccChHHHHHHHHHHh----cCCCCeEEEECCCCCcHHHHHHHHHHHHccCc----ccccEEEEec
Q 021660 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTS----ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ----YHNMILELNA 112 (309)
Q Consensus 41 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~----~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~----~~~~~~~~~~ 112 (309)
..+...|.|. +++|++..++.+..++. +...++++|+||||+|||++++.+++++.... ....++.+++
T Consensus 6 ~~l~~~~~p~---~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 6 DLLEPDYVPD---RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred hhCCCCCCCC---CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 3455677775 68999999988888775 34456699999999999999999999874321 2256777787
Q ss_pred CCCcchHHH-HHHHHHhhh--cccc---------------ccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHH-----hc
Q 021660 113 SDDRGIDVV-RQQIQDFAS--TQSF---------------SFGVKASVKLVLLDEADAMTKDAQFALRRVIEK-----YT 169 (309)
Q Consensus 113 ~~~~~~~~~-~~~~~~~~~--~~~~---------------~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~-----~~ 169 (309)
........+ ......+.. .... .+.....+.+|+|||+|.+.......|..+++. .+
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~ 162 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLD 162 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCC
Confidence 654332222 222222210 0000 000112467899999999963333334444432 22
Q ss_pred -CCceEEEEecCCc---ccchhhhcce--eEEEecCCChHHHHHHHHHHHHH--cCCCCCHHHHHHHHH---HhcCCHHH
Q 021660 170 -KNTRFALICNQVN---KIIPALQSRC--TRFRFAPLEPVHVTERLKHVIEA--EGLDVTEGGLAALVR---LCNGDMRK 238 (309)
Q Consensus 170 -~~~~~i~~~~~~~---~l~~~l~~r~--~~i~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~l~~i~~---~~~g~~r~ 238 (309)
....+|+++|... .+.+.+.+|+ ..+.|+|++.+++.++++.++.. .+..+++++++.+++ .+.|++|.
T Consensus 163 ~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~ 242 (365)
T TIGR02928 163 NAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARK 242 (365)
T ss_pred CCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHH
Confidence 3456778887764 4566777787 57999999999999999999863 233478887776555 45799999
Q ss_pred HHHHHHHHHhhc-----CCcCHHHHHhhhCCC
Q 021660 239 ALNILQSTHMAS-----QQITEEAVYLCTGNP 265 (309)
Q Consensus 239 ~~~~l~~~~~~~-----~~i~~~~v~~~~~~~ 265 (309)
+++.|+.+...+ +.|+.+++..+....
T Consensus 243 al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 243 AIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 999998776533 469999998877554
No 80
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.84 E-value=3.6e-19 Score=163.28 Aligned_cols=215 Identities=20% Similarity=0.274 Sum_probs=151.4
Q ss_pred cccccChHHHHHHHHHHhc----CCCCe-EEEECCCCCcHHHHHHHHHHHHccC----c-ccccEEEEecCCCcchHHHH
Q 021660 53 ADVAAHRDIVDTIDRLTSE----NRLPH-LLLYGPPGTGKTSTILAVARKLYGA----Q-YHNMILELNASDDRGIDVVR 122 (309)
Q Consensus 53 ~~~ig~~~~~~~l~~~~~~----~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~ 122 (309)
+.|.+++..++.|...+.. ..+.+ ++|+|+||||||++++.+.+++... . ..+.++.++|........+.
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 5688999988877776643 33334 5799999999999999999887431 2 23677888886543333322
Q ss_pred HHHHHhh-hcccc-c----------c----CCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc---CCceEEEEecCC--
Q 021660 123 QQIQDFA-STQSF-S----------F----GVKASVKLVLLDEADAMTKDAQFALRRVIEKYT---KNTRFALICNQV-- 181 (309)
Q Consensus 123 ~~~~~~~-~~~~~-~----------~----~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~---~~~~~i~~~~~~-- 181 (309)
..+.... ...+. . + .......||+|||+|.|....+..|+.+++.+. ....+|+++|..
T Consensus 835 qvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDL 914 (1164)
T PTZ00112 835 QVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDL 914 (1164)
T ss_pred HHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhc
Confidence 2222111 00000 0 0 011134589999999998767777888887543 234566667653
Q ss_pred -cccchhhhcce--eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHH---HhcCCHHHHHHHHHHHHhhc--CCc
Q 021660 182 -NKIIPALQSRC--TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVR---LCNGDMRKALNILQSTHMAS--QQI 253 (309)
Q Consensus 182 -~~l~~~l~~r~--~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~---~~~g~~r~~~~~l~~~~~~~--~~i 253 (309)
..+.+.+.+|+ ..+.|+|++.+++.+||+.++......+++++++.+++ ...||+|.|+++|+.+.... ..|
T Consensus 915 perLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikegskV 994 (1164)
T PTZ00112 915 PERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQKI 994 (1164)
T ss_pred chhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCCCcc
Confidence 45667888887 45899999999999999999987655689999999998 56799999999999887643 468
Q ss_pred CHHHHHhhhCCCCh
Q 021660 254 TEEAVYLCTGNPLP 267 (309)
Q Consensus 254 ~~~~v~~~~~~~~~ 267 (309)
+.++|..+......
T Consensus 995 T~eHVrkAleeiE~ 1008 (1164)
T PTZ00112 995 VPRDITEATNQLFD 1008 (1164)
T ss_pred CHHHHHHHHHHHHh
Confidence 88999888755433
No 81
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.84 E-value=1e-19 Score=140.54 Aligned_cols=140 Identities=36% Similarity=0.609 Sum_probs=109.1
Q ss_pred cChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCcc------------------cccEEEEecCCC--
Q 021660 57 AHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY------------------HNMILELNASDD-- 115 (309)
Q Consensus 57 g~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~------------------~~~~~~~~~~~~-- 115 (309)
||+.+++.|.+.+..++.++ ++|+||+|+||+++|..+++.+.+... ..++..+.....
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 78999999999999999998 899999999999999999999977543 456677766543
Q ss_pred -cchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeE
Q 021660 116 -RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTR 194 (309)
Q Consensus 116 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~l~~r~~~ 194 (309)
...+.++.....+...... ...+++||||+|.+..+.+++|++.||+++.++.+|++|+....+.+++++||..
T Consensus 81 ~i~i~~ir~i~~~~~~~~~~-----~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~ 155 (162)
T PF13177_consen 81 SIKIDQIREIIEFLSLSPSE-----GKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQV 155 (162)
T ss_dssp SBSHHHHHHHHHHCTSS-TT-----SSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEE
T ss_pred hhhHHHHHHHHHHHHHHHhc-----CCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceE
Confidence 5667777555544332221 2689999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCC
Q 021660 195 FRFAPLE 201 (309)
Q Consensus 195 i~~~~~~ 201 (309)
+.|.+++
T Consensus 156 i~~~~ls 162 (162)
T PF13177_consen 156 IRFRPLS 162 (162)
T ss_dssp EEE----
T ss_pred EecCCCC
Confidence 9998864
No 82
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.84 E-value=1.3e-18 Score=154.62 Aligned_cols=255 Identities=20% Similarity=0.293 Sum_probs=165.9
Q ss_pred hhhhcCCCCccccccChHHHHHHHHHHh----cCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcch
Q 021660 43 WVEKYRPQSLADVAAHRDIVDTIDRLTS----ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 118 (309)
Q Consensus 43 ~~~~~~p~~~~~~ig~~~~~~~l~~~~~----~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 118 (309)
+...|.| +.++|++..++.+...+. +..+++++|+||||+|||++++.+++.+...+....++.+++......
T Consensus 23 l~~~~~P---~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~ 99 (394)
T PRK00411 23 LEPDYVP---ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTR 99 (394)
T ss_pred CCCCCcC---CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCH
Confidence 4444444 568899999888877763 345566999999999999999999999865554567778887654332
Q ss_pred HHHH-HHHHHhhhccccc---------------cCCCCccEEEEEeCCCCCC----HHHHHHHHHHHHHhcC-CceEEEE
Q 021660 119 DVVR-QQIQDFASTQSFS---------------FGVKASVKLVLLDEADAMT----KDAQFALRRVIEKYTK-NTRFALI 177 (309)
Q Consensus 119 ~~~~-~~~~~~~~~~~~~---------------~~~~~~~~lliiDe~~~l~----~~~~~~l~~~l~~~~~-~~~~i~~ 177 (309)
..+. ....++....... +.....+.+|+|||+|.+. .+....|+.+++..+. +..+|++
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i 179 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGI 179 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEE
Confidence 2222 2222221100000 0111245789999999986 2334444444444333 4557888
Q ss_pred ecCCc---ccchhhhcce--eEEEecCCChHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 021660 178 CNQVN---KIIPALQSRC--TRFRFAPLEPVHVTERLKHVIEAE--GLDVTEGGLAALVRLC---NGDMRKALNILQSTH 247 (309)
Q Consensus 178 ~~~~~---~l~~~l~~r~--~~i~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~l~~i~~~~---~g~~r~~~~~l~~~~ 247 (309)
++... .+.+.+.+|+ ..+.|+|++.+++.++++.++... ...+++++++.+++.+ .|++|.++++|..+.
T Consensus 180 ~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~ 259 (394)
T PRK00411 180 SSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAG 259 (394)
T ss_pred ECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 87653 3556666666 678999999999999999998653 3368999999999988 799999999998765
Q ss_pred hhc-----CCcCHHHHHhhhCCCChHHHH-----------HHHHHHh--------cCCHHHHHHHHHHHHHhcCCCH
Q 021660 248 MAS-----QQITEEAVYLCTGNPLPKDIE-----------QISYWLL--------NESFADSFKRISEMKMRKGLAL 300 (309)
Q Consensus 248 ~~~-----~~i~~~~v~~~~~~~~~~~~~-----------~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~ 300 (309)
..+ ..|+.+++..++......... .++.++. .-....+++.+..++...|.+|
T Consensus 260 ~~a~~~~~~~I~~~~v~~a~~~~~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~ 336 (394)
T PRK00411 260 LIAEREGSRKVTEEDVRKAYEKSEIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEP 336 (394)
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCc
Confidence 432 469999998777544222111 1222221 1134566666666665567765
No 83
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.84 E-value=3.6e-19 Score=159.88 Aligned_cols=207 Identities=26% Similarity=0.446 Sum_probs=139.8
Q ss_pred CCCcChhhhcCCCCccccccChHHHHHHHHHHhcCC-----CCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEec
Q 021660 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENR-----LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (309)
Q Consensus 38 ~~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~-----~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 112 (309)
....+|.++|+|.+.+|++.++..++.++.|+...- ...++|+||+||||||+++.+++++ +..+.++..
T Consensus 4 ~~~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~n 78 (519)
T PF03215_consen 4 DESEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWIN 78 (519)
T ss_pred cccCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecC
Confidence 456789999999999999999999999999997531 2238999999999999999999998 555555533
Q ss_pred CCC---c------------chHHHHHH---HHHh-hhcccc-ccC-----CCCccEEEEEeCCCCCCHHHHHHHHHHHHH
Q 021660 113 SDD---R------------GIDVVRQQ---IQDF-ASTQSF-SFG-----VKASVKLVLLDEADAMTKDAQFALRRVIEK 167 (309)
Q Consensus 113 ~~~---~------------~~~~~~~~---~~~~-~~~~~~-~~~-----~~~~~~lliiDe~~~l~~~~~~~l~~~l~~ 167 (309)
... . ........ +..+ ...... .+. ....++||+|+|+..+.......|..+|..
T Consensus 79 p~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~~ 158 (519)
T PF03215_consen 79 PVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREALRQ 158 (519)
T ss_pred CCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHHHH
Confidence 221 0 00001111 2222 111010 010 123688999999988764443555555553
Q ss_pred h---cCC-ceEEEEecC--------Cc--------ccchhhhcc--eeEEEecCCChHHHHHHHHHHHHHc-----CC-C
Q 021660 168 Y---TKN-TRFALICNQ--------VN--------KIIPALQSR--CTRFRFAPLEPVHVTERLKHVIEAE-----GL-D 219 (309)
Q Consensus 168 ~---~~~-~~~i~~~~~--------~~--------~l~~~l~~r--~~~i~~~~~~~~~~~~~l~~~~~~~-----~~-~ 219 (309)
. ... +.||+++.. .. .+.+.+... +..|.|.|..+.-+++.|.+++..+ +. .
T Consensus 159 ~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~ 238 (519)
T PF03215_consen 159 YLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGKNK 238 (519)
T ss_pred HHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCCcc
Confidence 2 222 444444411 00 234455443 4889999999999999999999887 32 2
Q ss_pred C--CHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 021660 220 V--TEGGLAALVRLCNGDMRKALNILQSTHMA 249 (309)
Q Consensus 220 ~--~~~~l~~i~~~~~g~~r~~~~~l~~~~~~ 249 (309)
. ..+.++.|++.+.||+|.|++.||.++..
T Consensus 239 ~p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~~ 270 (519)
T PF03215_consen 239 VPDKQSVLDSIAESSNGDIRSAINNLQFWCLK 270 (519)
T ss_pred CCChHHHHHHHHHhcCchHHHHHHHHHHHhcC
Confidence 2 23468999999999999999999999983
No 84
>PRK05642 DNA replication initiation factor; Validated
Probab=99.83 E-value=8e-19 Score=143.93 Aligned_cols=198 Identities=18% Similarity=0.244 Sum_probs=138.3
Q ss_pred Ccccccc--ChHHHHHHHHHHhcC---CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHH
Q 021660 51 SLADVAA--HRDIVDTIDRLTSEN---RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQI 125 (309)
Q Consensus 51 ~~~~~ig--~~~~~~~l~~~~~~~---~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (309)
+|++++. +..++..+.++.... ....++|+||+|+|||+|++++++++...+..+.++ +..... ......+
T Consensus 17 tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~--~~~~~~--~~~~~~~ 92 (234)
T PRK05642 17 TFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYL--PLAELL--DRGPELL 92 (234)
T ss_pred cccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEe--eHHHHH--hhhHHHH
Confidence 5666663 233344455443321 124499999999999999999999875444443333 322111 0111111
Q ss_pred HHhhhccccccCCCCccEEEEEeCCCCCC--HHHHHHHHHHHHHhcC-CceEEEEecCCc----ccchhhhcce---eEE
Q 021660 126 QDFASTQSFSFGVKASVKLVLLDEADAMT--KDAQFALRRVIEKYTK-NTRFALICNQVN----KIIPALQSRC---TRF 195 (309)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~lliiDe~~~l~--~~~~~~l~~~l~~~~~-~~~~i~~~~~~~----~l~~~l~~r~---~~i 195 (309)
..+. +..+|+|||++.+. +.....|+.+++.... +..+|++++..+ ...+.+.+|+ ..+
T Consensus 93 ~~~~-----------~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~ 161 (234)
T PRK05642 93 DNLE-----------QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVF 161 (234)
T ss_pred Hhhh-----------hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeee
Confidence 1111 24589999999875 3446779999986543 455666665322 3468899998 889
Q ss_pred EecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhh----cCCcCHHHHHhhhC
Q 021660 196 RFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA----SQQITEEAVYLCTG 263 (309)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~----~~~i~~~~v~~~~~ 263 (309)
.+.+|+.++...+++.++...++.++++++++|+++++||+|.+.+.++.+... ...||...+++++.
T Consensus 162 ~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~it~~~~~~~L~ 233 (234)
T PRK05642 162 QMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLERLDQASLQAQRKLTIPFLKETLG 233 (234)
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHhc
Confidence 999999999999999888888999999999999999999999999999877643 25788888887764
No 85
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=8.5e-19 Score=145.20 Aligned_cols=198 Identities=23% Similarity=0.346 Sum_probs=143.5
Q ss_pred CccccccChHHHHHHHHHHhcC-------------CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCC--
Q 021660 51 SLADVAAHRDIVDTIDRLTSEN-------------RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD-- 115 (309)
Q Consensus 51 ~~~~~ig~~~~~~~l~~~~~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~-- 115 (309)
+.+++-|-++.++.+++.+.-. ++..+|||||||||||.||+++|++. +..|+.+..+..
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T-----~AtFIrvvgSElVq 223 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT-----DATFIRVVGSELVQ 223 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc-----CceEEEeccHHHHH
Confidence 6788888899999998887521 33449999999999999999999997 778887776642
Q ss_pred ----cchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCC-----------HHHHHHHHHHHHHh-----cCCceEE
Q 021660 116 ----RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT-----------KDAQFALRRVIEKY-----TKNTRFA 175 (309)
Q Consensus 116 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~-----------~~~~~~l~~~l~~~-----~~~~~~i 175 (309)
.+...+++.+. ++ ....++||+|||+|.+. .+.+-.++++|.+. ..+..+|
T Consensus 224 KYiGEGaRlVRelF~-lA--------rekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI 294 (406)
T COG1222 224 KYIGEGARLVRELFE-LA--------REKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVI 294 (406)
T ss_pred HHhccchHHHHHHHH-HH--------hhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEE
Confidence 23333333322 22 22357999999999884 34567788888754 4578899
Q ss_pred EEecCCcccchhhhc--ce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHH-HHHHhhc-
Q 021660 176 LICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNIL-QSTHMAS- 250 (309)
Q Consensus 176 ~~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l-~~~~~~~- 250 (309)
++||..+-++|+|.+ |+ +.|+|+.|+.+...+|++-+.++-.+. ++-.++.|++.+.|.-+.-+..+ ..+...+
T Consensus 295 ~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-~dvd~e~la~~~~g~sGAdlkaictEAGm~Ai 373 (406)
T COG1222 295 MATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-DDVDLELLARLTEGFSGADLKAICTEAGMFAI 373 (406)
T ss_pred EecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-cCcCHHHHHHhcCCCchHHHHHHHHHHhHHHH
Confidence 999999999999988 45 779999999999999999887765432 33457888888877555444433 3333222
Q ss_pred ----CCcCHHHHHhhhC
Q 021660 251 ----QQITEEAVYLCTG 263 (309)
Q Consensus 251 ----~~i~~~~v~~~~~ 263 (309)
..++.+++.++..
T Consensus 374 R~~R~~Vt~~DF~~Av~ 390 (406)
T COG1222 374 RERRDEVTMEDFLKAVE 390 (406)
T ss_pred HhccCeecHHHHHHHHH
Confidence 4577777766653
No 86
>PRK09087 hypothetical protein; Validated
Probab=99.82 E-value=9e-19 Score=142.40 Aligned_cols=188 Identities=19% Similarity=0.204 Sum_probs=136.2
Q ss_pred Ccccccc---ChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHH
Q 021660 51 SLADVAA---HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQD 127 (309)
Q Consensus 51 ~~~~~ig---~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (309)
+|++|+. +..++..+.++.. ...+.++|+||+|+|||+|++.+++.. ...++... . ...+. +..
T Consensus 19 ~~~~Fi~~~~N~~a~~~l~~~~~-~~~~~l~l~G~~GsGKThLl~~~~~~~-----~~~~i~~~--~-~~~~~----~~~ 85 (226)
T PRK09087 19 GRDDLLVTESNRAAVSLVDHWPN-WPSPVVVLAGPVGSGKTHLASIWREKS-----DALLIHPN--E-IGSDA----ANA 85 (226)
T ss_pred ChhceeecCchHHHHHHHHhccc-CCCCeEEEECCCCCCHHHHHHHHHHhc-----CCEEecHH--H-cchHH----HHh
Confidence 5777775 4556666666542 233449999999999999999998774 33333221 0 11111 111
Q ss_pred hhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCCc----ccchhhhcce---eEEEecC
Q 021660 128 FASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTK-NTRFALICNQVN----KIIPALQSRC---TRFRFAP 199 (309)
Q Consensus 128 ~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~-~~~~i~~~~~~~----~l~~~l~~r~---~~i~~~~ 199 (309)
. ...+|+|||++.+. ..+..|+++++.... ...+|++++... ...+.+++|+ ..+.+.+
T Consensus 86 ~------------~~~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~ 152 (226)
T PRK09087 86 A------------AEGPVLIEDIDAGG-FDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGE 152 (226)
T ss_pred h------------hcCeEEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCC
Confidence 1 12489999999875 345778888886554 455666665332 3467899998 8999999
Q ss_pred CChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhh----cCCcCHHHHHhhhCC
Q 021660 200 LEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA----SQQITEEAVYLCTGN 264 (309)
Q Consensus 200 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~----~~~i~~~~v~~~~~~ 264 (309)
|+.+++..++++.++..++.++++++++|++++.|+++.+...+..+... ...+|...+++++..
T Consensus 153 pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~~~~~it~~~~~~~l~~ 221 (226)
T PRK09087 153 PDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQTIVDRLDRLALERKSRITRALAAEVLNE 221 (226)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999877666432 357898888887754
No 87
>PRK06620 hypothetical protein; Validated
Probab=99.82 E-value=1.5e-18 Score=139.88 Aligned_cols=175 Identities=13% Similarity=0.141 Sum_probs=124.6
Q ss_pred ChHHHHHHHHHHhcCC--C--CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhccc
Q 021660 58 HRDIVDTIDRLTSENR--L--PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQS 133 (309)
Q Consensus 58 ~~~~~~~l~~~~~~~~--~--~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (309)
+..+...+.++..... + +.++||||+|+|||+|++++++.. +..+.. ... . . .....
T Consensus 24 N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~-----~~~~~~--~~~-~-~-------~~~~~--- 84 (214)
T PRK06620 24 NDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLS-----NAYIIK--DIF-F-N-------EEILE--- 84 (214)
T ss_pred HHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhcc-----CCEEcc--hhh-h-c-------hhHHh---
Confidence 4566777777775321 2 449999999999999999988775 222211 000 0 0 01110
Q ss_pred cccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCCc---ccchhhhccee---EEEecCCChHHHH
Q 021660 134 FSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTK-NTRFALICNQVN---KIIPALQSRCT---RFRFAPLEPVHVT 206 (309)
Q Consensus 134 ~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~-~~~~i~~~~~~~---~l~~~l~~r~~---~i~~~~~~~~~~~ 206 (309)
...+++|||+|.+.. ..|+.+++.... ...++++++..+ .+ +.+++|+. ++.+.+|+.+++.
T Consensus 85 -------~~d~lliDdi~~~~~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~ 153 (214)
T PRK06620 85 -------KYNAFIIEDIENWQE---PALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIK 153 (214)
T ss_pred -------cCCEEEEeccccchH---HHHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHH
Confidence 346899999997632 456666654432 334555554322 24 88999985 8999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhh----cCCcCHHHHHhhh
Q 021660 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA----SQQITEEAVYLCT 262 (309)
Q Consensus 207 ~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~----~~~i~~~~v~~~~ 262 (309)
.++++.+...++.++++++++|+++++||+|.+.+.|+.+... ...||.+.+++++
T Consensus 154 ~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~it~~~~~~~l 213 (214)
T PRK06620 154 ILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENINYFALISKRKITISLVKEVL 213 (214)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHh
Confidence 9999999989999999999999999999999999999887542 2458888877654
No 88
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.82 E-value=2.4e-18 Score=158.92 Aligned_cols=226 Identities=22% Similarity=0.281 Sum_probs=160.9
Q ss_pred CcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCc-----ccccEEEEecCC
Q 021660 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-----YHNMILELNASD 114 (309)
Q Consensus 40 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-----~~~~~~~~~~~~ 114 (309)
..+..+.++|.+|++++|++..++.+.+.+......+++|+||+||||||+++.+.+...... ....++.+++..
T Consensus 141 ~~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~ 220 (615)
T TIGR02903 141 HKSAQSLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTT 220 (615)
T ss_pred hhHHhhhcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechh
Confidence 345677899999999999999999988888777667799999999999999999987763211 134577777654
Q ss_pred Ccc-hHHHHH------------HHH-Hhhhcc----ccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc-------
Q 021660 115 DRG-IDVVRQ------------QIQ-DFASTQ----SFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT------- 169 (309)
Q Consensus 115 ~~~-~~~~~~------------~~~-~~~~~~----~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~------- 169 (309)
... ...+.. ... .+.... ....-...+.++|+|||++.++...+..|++++++..
T Consensus 221 l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~ 300 (615)
T TIGR02903 221 LRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSY 300 (615)
T ss_pred ccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecce
Confidence 210 011100 000 000000 0001112246799999999999999999999998531
Q ss_pred -------------------CC--ceEEEEe-cCCcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHH
Q 021660 170 -------------------KN--TRFALIC-NQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAA 227 (309)
Q Consensus 170 -------------------~~--~~~i~~~-~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 227 (309)
.. .++|.++ +....+.+.+++||..+.|++++.+++..++++.+.+.++.+++++++.
T Consensus 301 ~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~ 380 (615)
T TIGR02903 301 YDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLAAGVEEL 380 (615)
T ss_pred eccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 11 2233323 4556788899999999999999999999999999998888899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhc-------------CCcCHHHHHhhhCCCC
Q 021660 228 LVRLCNGDMRKALNILQSTHMAS-------------QQITEEAVYLCTGNPL 266 (309)
Q Consensus 228 i~~~~~g~~r~~~~~l~~~~~~~-------------~~i~~~~v~~~~~~~~ 266 (309)
|++++. +.|.+++.|+.+.... ..|+.+++.++++...
T Consensus 381 L~~ys~-~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 381 IARYTI-EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred HHHCCC-cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCCc
Confidence 988875 6799999886554321 1477788888777654
No 89
>CHL00181 cbbX CbbX; Provisional
Probab=99.81 E-value=2e-18 Score=145.23 Aligned_cols=188 Identities=22% Similarity=0.282 Sum_probs=131.6
Q ss_pred cccccChHHHHHHHHHHh---------------cCCCCeEEEECCCCCcHHHHHHHHHHHHccCccc--ccEEEEecCCC
Q 021660 53 ADVAAHRDIVDTIDRLTS---------------ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYH--NMILELNASDD 115 (309)
Q Consensus 53 ~~~ig~~~~~~~l~~~~~---------------~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~--~~~~~~~~~~~ 115 (309)
.+++|.+.+++.+.+++. .....+++|+||||||||++|+.+++.+...+.. ..++.++..+.
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 479999999887766642 0123349999999999999999999987543321 23555553321
Q ss_pred cchH--HHHHHHHHhhhccccccCCCCccEEEEEeCCCCC---------CHHHHHHHHHHHHHhcCCceEEEEecCCc--
Q 021660 116 RGID--VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAM---------TKDAQFALRRVIEKYTKNTRFALICNQVN-- 182 (309)
Q Consensus 116 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l---------~~~~~~~l~~~l~~~~~~~~~i~~~~~~~-- 182 (309)
.+.. ............ +.+++|+|||++.+ ..+.++.|+.+|+....+.++|+++....
T Consensus 103 ~~~~~g~~~~~~~~~l~~--------a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~ 174 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKK--------AMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMD 174 (287)
T ss_pred HHHHhccchHHHHHHHHH--------ccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHH
Confidence 1000 000011111111 13579999999987 34567888999987766666666654221
Q ss_pred ---ccchhhhcce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--------hcCCHHHHHHHHHHHHh
Q 021660 183 ---KIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRL--------CNGDMRKALNILQSTHM 248 (309)
Q Consensus 183 ---~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~--------~~g~~r~~~~~l~~~~~ 248 (309)
...+.+.+|| ..+.|++++.+++.+++..++++.+..++++....+.++ ..||.|.+.+.++.+..
T Consensus 175 ~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~ 252 (287)
T CHL00181 175 KFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARM 252 (287)
T ss_pred HHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 2348899999 789999999999999999999999999999888777765 24899999999987764
No 90
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.81 E-value=9e-18 Score=149.70 Aligned_cols=207 Identities=13% Similarity=0.206 Sum_probs=145.8
Q ss_pred CCCccccccC---hHHHHHHHHHHhcCC--CCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHH
Q 021660 49 PQSLADVAAH---RDIVDTIDRLTSENR--LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQ 123 (309)
Q Consensus 49 p~~~~~~ig~---~~~~~~l~~~~~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (309)
+.+|+.|+.. ..+...+..+..... ...++|+|++|+|||+|++++++.+.....+..++.+++.. ....+..
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~--f~~~~~~ 188 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDE--FARKAVD 188 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH--HHHHHHH
Confidence 4577777742 224555555554322 23499999999999999999999875433344444444432 1111111
Q ss_pred HH-------HHhhhccccccCCCCccEEEEEeCCCCCC--HHHHHHHHHHHHHhcC-CceEEEEecCCc----ccchhhh
Q 021660 124 QI-------QDFASTQSFSFGVKASVKLVLLDEADAMT--KDAQFALRRVIEKYTK-NTRFALICNQVN----KIIPALQ 189 (309)
Q Consensus 124 ~~-------~~~~~~~~~~~~~~~~~~lliiDe~~~l~--~~~~~~l~~~l~~~~~-~~~~i~~~~~~~----~l~~~l~ 189 (309)
.+ ..+... + ....+|+|||++.+. ...++.|+.+++.... ...+|++++..+ .+.+.+.
T Consensus 189 ~l~~~~~~~~~~~~~----~---~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~ 261 (450)
T PRK14087 189 ILQKTHKEIEQFKNE----I---CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLI 261 (450)
T ss_pred HHHHhhhHHHHHHHH----h---ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHH
Confidence 11 111110 0 145699999999987 5567888888886543 345777776544 3457888
Q ss_pred cce---eEEEecCCChHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc------CCcCHHHH
Q 021660 190 SRC---TRFRFAPLEPVHVTERLKHVIEAEGL--DVTEGGLAALVRLCNGDMRKALNILQSTHMAS------QQITEEAV 258 (309)
Q Consensus 190 ~r~---~~i~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~------~~i~~~~v 258 (309)
+|+ ..+.+.+|+.+++.++|++.++..|. .++++++++|++.++||+|.+...|..+...+ ..||.+.+
T Consensus 262 SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v 341 (450)
T PRK14087 262 TRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIV 341 (450)
T ss_pred HHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCCCCHHHH
Confidence 887 67999999999999999999998875 69999999999999999999999998775432 46899988
Q ss_pred HhhhCC
Q 021660 259 YLCTGN 264 (309)
Q Consensus 259 ~~~~~~ 264 (309)
++++..
T Consensus 342 ~~~l~~ 347 (450)
T PRK14087 342 SDLFRD 347 (450)
T ss_pred HHHHhh
Confidence 888754
No 91
>PRK05629 hypothetical protein; Validated
Probab=99.81 E-value=1.8e-17 Score=142.49 Aligned_cols=223 Identities=13% Similarity=0.138 Sum_probs=178.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccCcc-cccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCC
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGAQY-HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAM 153 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l 153 (309)
+.++|||+...-.......+.+.+...+. ..++..++..+.. ...+ + ... +.+. |+ ++++|++++.+..
T Consensus 7 ~vyL~~G~e~~l~~~~~~~i~~~~~~~~~~~~n~~~~d~~e~~-~~~l---~-~~~-t~sl-F~---~~rlV~v~~~~~~ 76 (318)
T PRK05629 7 PVHLVLGDDEFLAERARLNIVHDIRSSMADSLQVTTLKASEVS-QGEL---L-DAL-SPSL-FG---EDRVIVLTNMEQA 76 (318)
T ss_pred ceEEEEeCHHHHHHHHHHHHHHHHhccCCCCCceEEeecccCC-HHHH---H-Hhh-CcCc-cC---CceEEEEeChHhc
Confidence 45999998875555555556655544333 4577777766532 2222 2 222 2222 32 6899999998776
Q ss_pred CHHHHHHHHHHHHHhcCCceEEEEecCCc---ccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 021660 154 TKDAQFALRRVIEKYTKNTRFALICNQVN---KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVR 230 (309)
Q Consensus 154 ~~~~~~~l~~~l~~~~~~~~~i~~~~~~~---~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~ 230 (309)
.+...+.+..++..+++.+++|+++.... ++.+.+...+..+++.++...++..|+.+++++.|..+++++++.+++
T Consensus 77 ~~~~~~~l~~~l~~~~~~~~Lil~~~~~~~~kk~~K~l~k~~~~ve~~~~~~~~l~~wi~~~~~~~g~~i~~~A~~~L~~ 156 (318)
T PRK05629 77 GKEPTDLALSAAVDPSPGIYLIIMHSGGGRTKSMVPKLEKIAVVHEAAKLKPRERPGWVTQEFKNHGVRPTPDVVHALLE 156 (318)
T ss_pred ChhHHHHHHHHHhCCCCCeEEEEEcCCcchhhHHHHHHHhcceEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 66667788999998888888888775332 344567777888999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhh-cCCcCHHHHHhhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 231 LCNGDMRKALNILQSTHMA-SQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 231 ~~~g~~r~~~~~l~~~~~~-~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
.+++|+..+.+.+++++.+ .+.||.++|...+......++|++++++..++...++..+++++ ..|.+|..|++.|.
T Consensus 157 ~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~iF~l~dAv~~g~~~~Al~~l~~l~-~~g~~pi~il~~l~ 234 (318)
T PRK05629 157 GVGSDLRELASAISQLVEDTQGNVTVEKVRAYYVGVAEVSGFDIADLACAGQVSKAVASTRRAL-QLGVSPVALAAALS 234 (318)
T ss_pred HHCccHHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCccchHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCcHHHHHHHH
Confidence 9999999999999998865 36799999999999999999999999999999999999999999 99999999988774
No 92
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.80 E-value=1.5e-17 Score=144.60 Aligned_cols=209 Identities=21% Similarity=0.356 Sum_probs=145.3
Q ss_pred CCCCCcChhhhcCCCCccccccChHHHHHHHHHHh-----cCCCCe--EEEECCCCCcHHHHHHHHHHHHccCcccccEE
Q 021660 36 PDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTS-----ENRLPH--LLLYGPPGTGKTSTILAVARKLYGAQYHNMIL 108 (309)
Q Consensus 36 ~~~~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~-----~~~~~~--~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~ 108 (309)
.......|.++|+|.+.+++.-++..++.++.|+. ....++ +||+||+||||||.++.+++++ ++.+.
T Consensus 65 ~~d~~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel-----g~~~~ 139 (634)
T KOG1970|consen 65 KEDEFELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL-----GYQLI 139 (634)
T ss_pred CccccchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh-----Cceee
Confidence 34456779999999999999999999999999998 444443 9999999999999999999998 66666
Q ss_pred EEecCCC-------c----c----hHHHHHHHHHhhhcccc--c-c----CCCCccEEEEEeCCCCCCHH-HHHHHHHHH
Q 021660 109 ELNASDD-------R----G----IDVVRQQIQDFASTQSF--S-F----GVKASVKLVLLDEADAMTKD-AQFALRRVI 165 (309)
Q Consensus 109 ~~~~~~~-------~----~----~~~~~~~~~~~~~~~~~--~-~----~~~~~~~lliiDe~~~l~~~-~~~~l~~~l 165 (309)
++..... . + ...-...++.+...... . . .....+++|+|||+...+.. ....+.++|
T Consensus 140 Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL 219 (634)
T KOG1970|consen 140 EWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVL 219 (634)
T ss_pred eecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhhhHHHHHHHH
Confidence 6652211 0 0 11111222222222100 0 0 11124669999998776533 344444444
Q ss_pred HH---hcCCceEEEEecCCc--------ccchh--hhcceeEEEecCCChHHHHHHHHHHHHHcCCCCC------HHHHH
Q 021660 166 EK---YTKNTRFALICNQVN--------KIIPA--LQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT------EGGLA 226 (309)
Q Consensus 166 ~~---~~~~~~~i~~~~~~~--------~l~~~--l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~l~ 226 (309)
.. ....+.|+++|+... ..+.. ...|...|.|.|..+.-+++.|++++..++...+ ...++
T Consensus 220 ~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~ 299 (634)
T KOG1970|consen 220 RLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVE 299 (634)
T ss_pred HHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHH
Confidence 43 333445555553221 22222 3445688999999999999999999999888777 68889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhh
Q 021660 227 ALVRLCNGDMRKALNILQSTHMA 249 (309)
Q Consensus 227 ~i~~~~~g~~r~~~~~l~~~~~~ 249 (309)
.+++.++||+|.|++.||..+..
T Consensus 300 ~i~~~s~GDIRsAInsLQlsssk 322 (634)
T KOG1970|consen 300 LICQGSGGDIRSAINSLQLSSSK 322 (634)
T ss_pred HHHHhcCccHHHHHhHhhhhccc
Confidence 99999999999999999998643
No 93
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.80 E-value=4.2e-18 Score=143.41 Aligned_cols=187 Identities=17% Similarity=0.227 Sum_probs=132.6
Q ss_pred ccccChHHHHHHHHHHhc----------C-----CCCeEEEECCCCCcHHHHHHHHHHHHccCccc--ccEEEEecCCCc
Q 021660 54 DVAAHRDIVDTIDRLTSE----------N-----RLPHLLLYGPPGTGKTSTILAVARKLYGAQYH--NMILELNASDDR 116 (309)
Q Consensus 54 ~~ig~~~~~~~l~~~~~~----------~-----~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~--~~~~~~~~~~~~ 116 (309)
+++|.+.+++.+..+... + ...+++|+||||||||++|+.+++.+...+.. ..++.+++....
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 689998888877665320 1 12259999999999999999999988543331 245555543211
Q ss_pred ch--HHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCC---------HHHHHHHHHHHHHhcCCceEEEEecCC--c-
Q 021660 117 GI--DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT---------KDAQFALRRVIEKYTKNTRFALICNQV--N- 182 (309)
Q Consensus 117 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~---------~~~~~~l~~~l~~~~~~~~~i~~~~~~--~- 182 (309)
+. ......+...... ..+.+|+|||++.+. .+.++.|+..|+....+.++|+++... +
T Consensus 103 ~~~~g~~~~~~~~~~~~--------a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~ 174 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKR--------AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDS 174 (284)
T ss_pred HhhcccchHHHHHHHHH--------ccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHH
Confidence 00 0000111111111 135799999999772 445788999998776666766665432 2
Q ss_pred --ccchhhhcce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--------hcCCHHHHHHHHHHHHh
Q 021660 183 --KIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRL--------CNGDMRKALNILQSTHM 248 (309)
Q Consensus 183 --~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~--------~~g~~r~~~~~l~~~~~ 248 (309)
.+.+.+.+|+ ..++|++++.+++..++..++++.+..+++++++.+.++ +.||.|.+.+.++.+..
T Consensus 175 ~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~ 251 (284)
T TIGR02880 175 FFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARL 251 (284)
T ss_pred HHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence 2458899999 789999999999999999999999999999999988876 36999999999988765
No 94
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.80 E-value=5.5e-18 Score=150.56 Aligned_cols=202 Identities=15% Similarity=0.191 Sum_probs=141.5
Q ss_pred Cccccc-cC--hHHHHHHHHHHhc------CCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHH
Q 021660 51 SLADVA-AH--RDIVDTIDRLTSE------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVV 121 (309)
Q Consensus 51 ~~~~~i-g~--~~~~~~l~~~~~~------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (309)
+|+.|+ |. ..+...+..+... .....++||||+|+|||+|++++++.+...+..+ ..++... ....+
T Consensus 109 tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v--~yi~~~~--f~~~~ 184 (445)
T PRK12422 109 TFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKI--LYVRSEL--FTEHL 184 (445)
T ss_pred cccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCE--EEeeHHH--HHHHH
Confidence 677776 43 2233455555532 1123499999999999999999999986544333 3333221 11111
Q ss_pred HHHHH-----HhhhccccccCCCCccEEEEEeCCCCCCH--HHHHHHHHHHHHh-cCCceEEEEecCCc----ccchhhh
Q 021660 122 RQQIQ-----DFASTQSFSFGVKASVKLVLLDEADAMTK--DAQFALRRVIEKY-TKNTRFALICNQVN----KIIPALQ 189 (309)
Q Consensus 122 ~~~~~-----~~~~~~~~~~~~~~~~~lliiDe~~~l~~--~~~~~l~~~l~~~-~~~~~~i~~~~~~~----~l~~~l~ 189 (309)
...+. .+... + ....+|+|||++.+.. ..++.|+.+++.. .....+|++++..+ .+.+.+.
T Consensus 185 ~~~l~~~~~~~f~~~----~---~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~ 257 (445)
T PRK12422 185 VSAIRSGEMQRFRQF----Y---RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLI 257 (445)
T ss_pred HHHHhcchHHHHHHH----c---ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHH
Confidence 11111 11100 1 1467999999999864 4567788887754 23456777776542 4567899
Q ss_pred cce---eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHH---hh----cCCcCHHHHH
Q 021660 190 SRC---TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH---MA----SQQITEEAVY 259 (309)
Q Consensus 190 ~r~---~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~---~~----~~~i~~~~v~ 259 (309)
+|+ ..+.+.+|+.+++..+|++.+...++.++++++++|++...+|+|.+.+.|..++ .. +..+|.+.++
T Consensus 258 SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~ 337 (445)
T PRK12422 258 SRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLLAKRVAYKKLSHQLLYVDDIK 337 (445)
T ss_pred hhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHH
Confidence 998 7899999999999999999999999999999999999999999999999998885 22 2468888887
Q ss_pred hhhC
Q 021660 260 LCTG 263 (309)
Q Consensus 260 ~~~~ 263 (309)
+++.
T Consensus 338 ~~l~ 341 (445)
T PRK12422 338 ALLH 341 (445)
T ss_pred HHHH
Confidence 7775
No 95
>PRK05907 hypothetical protein; Provisional
Probab=99.80 E-value=7.2e-17 Score=136.69 Aligned_cols=229 Identities=11% Similarity=0.095 Sum_probs=174.9
Q ss_pred HHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCc
Q 021660 62 VDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS 141 (309)
Q Consensus 62 ~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (309)
...+.+.++.++ +.++++|..- ......+.+.+..++. ..+++.. ...+. +....++.++ |+ .
T Consensus 7 ~~~~~~~~~~~~-~~y~~~g~~~---~~~~~~l~~~~~~~~~----~~fdg~~-~~~~~----ii~~aetlPf-Fa---e 69 (311)
T PRK05907 7 FKDFSQYYEEKR-PAVIVIGSSS---EEDKDIFIELLVSGRK----SEFDGQG-LLQQE----LLSWTEHFGL-FA---S 69 (311)
T ss_pred HHHHHHHHhcCC-ceEEEecCCc---HHHHHHHHHHhCCCcc----ceecCCC-CCHHH----HHHHHhcCCc-cc---C
Confidence 445556677777 8899999887 5566666666533222 2233333 22222 2233333333 33 5
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEE-EEecCCcc---cchhhhcceeE---EEecCCChHHHHHHHHHHHH
Q 021660 142 VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFA-LICNQVNK---IIPALQSRCTR---FRFAPLEPVHVTERLKHVIE 214 (309)
Q Consensus 142 ~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i-~~~~~~~~---l~~~l~~r~~~---i~~~~~~~~~~~~~l~~~~~ 214 (309)
+++|++.+.+.+.....+.|..+++++++.+.+| ++. ..++ +.+.+.....+ +.+.++...++..|+.++++
T Consensus 70 rRlV~v~~~~~~~~~~~~~L~~Yl~np~~~~~liv~~~-~~d~~kkl~K~i~k~~~v~~~~e~~~l~e~~L~~Wi~~~~~ 148 (311)
T PRK05907 70 QETIGIYQAEKMSSSTQEFLIRYARNPNPHLTLFLFTT-KQECFSSLSKKLSSALCLSLFGEWFADRDKRIAQLLIQRAK 148 (311)
T ss_pred eEEEEEecccccccccHHHHHHHHhCCCCCeEEEEEEe-cccHHHHHHHHHhhcceeccccccCCCCHHHHHHHHHHHHH
Confidence 8888998887776666789999999999876666 444 2222 23334322233 48999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHh-cCCHHHHHHHHHHHHhhc---CCcCHHHHHhhhCCCChHHHHHHHHHHhcCCHHHHHHHHH
Q 021660 215 AEGLDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS---QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRIS 290 (309)
Q Consensus 215 ~~~~~~~~~~l~~i~~~~-~g~~r~~~~~l~~~~~~~---~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 290 (309)
+.|..+++++++.+++++ ++|+..+.+.+++++.+. +.||.++|...+......++|++++++..++...|+..++
T Consensus 149 ~~g~~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~g~~~~It~e~V~~lv~~s~e~nIF~L~dai~~~~~~~Al~il~ 228 (311)
T PRK05907 149 ELGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQMGKKESLEASDIQSFVVKKEAASLWKLRDALLRRDRVEGHSLLR 228 (311)
T ss_pred HcCCCcCHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCCCCeECHHHHHHHhcCcccccHHHHHHHHHccCHHHHHHHHH
Confidence 999999999999999999 599999999999999873 5799999999999999999999999999999999999999
Q ss_pred HHHHhc-CCCHHHHHHHhhC
Q 021660 291 EMKMRK-GLALVDIVREVTM 309 (309)
Q Consensus 291 ~~~~~~-g~~~~~~~~~l~~ 309 (309)
+++ .. |.+|..|++.|.|
T Consensus 229 ~Ll-~~~ge~p~~ILall~r 247 (311)
T PRK05907 229 SLL-SDMGEDPLGIIAFLRS 247 (311)
T ss_pred HHH-HhcCCChHHHHHHHHH
Confidence 999 88 9999999998864
No 96
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.80 E-value=8e-18 Score=151.34 Aligned_cols=205 Identities=16% Similarity=0.221 Sum_probs=144.8
Q ss_pred Cccccc-c--ChHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHH
Q 021660 51 SLADVA-A--HRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQI 125 (309)
Q Consensus 51 ~~~~~i-g--~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (309)
+|+.|+ | +..+...+..+.... ....++|+||+|+|||+|++++++++........+..+++... ...+...+
T Consensus 120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~--~~~~~~~~ 197 (450)
T PRK00149 120 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKF--TNDFVNAL 197 (450)
T ss_pred cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHH--HHHHHHHH
Confidence 577755 3 344566666666543 2234999999999999999999999865544455555555431 11111111
Q ss_pred H-----HhhhccccccCCCCccEEEEEeCCCCCCH--HHHHHHHHHHHHhcC-CceEEEEecCCc----ccchhhhcce-
Q 021660 126 Q-----DFASTQSFSFGVKASVKLVLLDEADAMTK--DAQFALRRVIEKYTK-NTRFALICNQVN----KIIPALQSRC- 192 (309)
Q Consensus 126 ~-----~~~~~~~~~~~~~~~~~lliiDe~~~l~~--~~~~~l~~~l~~~~~-~~~~i~~~~~~~----~l~~~l~~r~- 192 (309)
. .+... + ....+|+|||++.+.. ..+..|+.+++.... ...+|++++..+ .+.+.+.+|+
T Consensus 198 ~~~~~~~~~~~----~---~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~ 270 (450)
T PRK00149 198 RNNTMEEFKEK----Y---RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFE 270 (450)
T ss_pred HcCcHHHHHHH----H---hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhc
Confidence 1 11110 0 1356999999998864 346677887775432 345666665543 2567888998
Q ss_pred --eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhh----cCCcCHHHHHhhhCC
Q 021660 193 --TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA----SQQITEEAVYLCTGN 264 (309)
Q Consensus 193 --~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~----~~~i~~~~v~~~~~~ 264 (309)
..+.+.+|+.+++..++++++...++.++++++++|++++.||+|.+...|..+... ...+|.+.+.+++..
T Consensus 271 ~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~ 348 (450)
T PRK00149 271 WGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKD 348 (450)
T ss_pred CCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999988888776643 256898888887764
No 97
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.80 E-value=1.5e-17 Score=147.82 Aligned_cols=204 Identities=15% Similarity=0.222 Sum_probs=140.9
Q ss_pred Cccccc-cChH--HHHHHHHHHhcCC--CCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHH
Q 021660 51 SLADVA-AHRD--IVDTIDRLTSENR--LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQI 125 (309)
Q Consensus 51 ~~~~~i-g~~~--~~~~l~~~~~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (309)
+|++++ |... +...+..+..... ...++|+||+|+|||+|++++++++.....+..++.+++... ...+...+
T Consensus 108 tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~--~~~~~~~~ 185 (405)
T TIGR00362 108 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKF--TNDFVNAL 185 (405)
T ss_pred cccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHH--HHHHHHHH
Confidence 566644 4332 4445555555422 234899999999999999999999865543445555554321 11111111
Q ss_pred H-----HhhhccccccCCCCccEEEEEeCCCCCCH--HHHHHHHHHHHHhc-CCceEEEEecCCc----ccchhhhcce-
Q 021660 126 Q-----DFASTQSFSFGVKASVKLVLLDEADAMTK--DAQFALRRVIEKYT-KNTRFALICNQVN----KIIPALQSRC- 192 (309)
Q Consensus 126 ~-----~~~~~~~~~~~~~~~~~lliiDe~~~l~~--~~~~~l~~~l~~~~-~~~~~i~~~~~~~----~l~~~l~~r~- 192 (309)
. .+... + ....+|+|||++.+.. ..+..|+.+++... ....+|++++..+ .+.+.+.+|+
T Consensus 186 ~~~~~~~~~~~----~---~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~ 258 (405)
T TIGR00362 186 RNNKMEEFKEK----Y---RSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFE 258 (405)
T ss_pred HcCCHHHHHHH----H---HhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhcc
Confidence 1 11100 0 1356999999998864 34567888887643 3455777776433 3557788887
Q ss_pred --eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc----CCcCHHHHHhhhC
Q 021660 193 --TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS----QQITEEAVYLCTG 263 (309)
Q Consensus 193 --~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~----~~i~~~~v~~~~~ 263 (309)
..+.|.+|+.+++..+++++++..++.++++++++|++++.||+|.+...|..+...+ ..||.+.+.+++.
T Consensus 259 ~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~ 335 (405)
T TIGR00362 259 WGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALK 335 (405)
T ss_pred CCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999888877665433 5688888777775
No 98
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.79 E-value=4.8e-18 Score=160.80 Aligned_cols=215 Identities=15% Similarity=0.165 Sum_probs=156.1
Q ss_pred cChhhhcCCCCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcc-----cccEEEEecCCC
Q 021660 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY-----HNMILELNASDD 115 (309)
Q Consensus 41 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~-----~~~~~~~~~~~~ 115 (309)
.+++++.+|..+++++|+++.+..+...+......+++|+||||||||++++.+++.+..... +..+..++....
T Consensus 170 ~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l 249 (731)
T TIGR02639 170 VDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSL 249 (731)
T ss_pred hhHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHH
Confidence 356777899999999999999999999998888888999999999999999999999844321 334555553221
Q ss_pred c----chHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH---------HHHHHHHHHHHHhcCCceEEEEecCC-
Q 021660 116 R----GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK---------DAQFALRRVIEKYTKNTRFALICNQV- 181 (309)
Q Consensus 116 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~---------~~~~~l~~~l~~~~~~~~~i~~~~~~- 181 (309)
. ....+.+.+......... ..+.||+|||+|.+.. +..+.|...+++ ....+|.+|+..
T Consensus 250 ~a~~~~~g~~e~~l~~i~~~~~~-----~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~IgaTt~~e 322 (731)
T TIGR02639 250 LAGTKYRGDFEERLKAVVSEIEK-----EPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRCIGSTTYEE 322 (731)
T ss_pred hhhccccchHHHHHHHHHHHHhc-----cCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEEEEecCHHH
Confidence 1 112333444444332111 1467999999998852 234566666652 345677777642
Q ss_pred ----cccchhhhcceeEEEecCCChHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhcC------CHHHHHHHHHHHH
Q 021660 182 ----NKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA----EGLDVTEGGLAALVRLCNG------DMRKALNILQSTH 247 (309)
Q Consensus 182 ----~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~l~~i~~~~~g------~~r~~~~~l~~~~ 247 (309)
...++++.+||+.+.+.+|+.++..++++....+ .++.++++++..+++.+.+ -|+.++++++.++
T Consensus 323 ~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~ 402 (731)
T TIGR02639 323 YKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAG 402 (731)
T ss_pred HHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhh
Confidence 2468899999999999999999999999977654 4678999999999998853 4899999998766
Q ss_pred hhc---------CCcCHHHHHhhh
Q 021660 248 MAS---------QQITEEAVYLCT 262 (309)
Q Consensus 248 ~~~---------~~i~~~~v~~~~ 262 (309)
... ..++.+++..++
T Consensus 403 a~~~~~~~~~~~~~v~~~~i~~~i 426 (731)
T TIGR02639 403 ASFRLRPKAKKKANVSVKDIENVV 426 (731)
T ss_pred hhhhcCcccccccccCHHHHHHHH
Confidence 421 237777776665
No 99
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.79 E-value=8.1e-18 Score=152.97 Aligned_cols=204 Identities=22% Similarity=0.236 Sum_probs=139.0
Q ss_pred hhcCCCCccccccChHHHHHHHHHHh-----------cC-CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEec
Q 021660 45 EKYRPQSLADVAAHRDIVDTIDRLTS-----------EN-RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (309)
Q Consensus 45 ~~~~p~~~~~~ig~~~~~~~l~~~~~-----------~~-~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 112 (309)
+.....+|++++|.++.+..+..++. +. .+.+++|+||||||||+++++++++. ...++.++.
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~-----~~~~~~i~~ 121 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-----GVPFFSISG 121 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc-----CCCeeeccH
Confidence 33445589999999999887776654 12 22349999999999999999999987 555666554
Q ss_pred CCC------cchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHH--------------HHHHHHHHHHHhc--C
Q 021660 113 SDD------RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD--------------AQFALRRVIEKYT--K 170 (309)
Q Consensus 113 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~--------------~~~~l~~~l~~~~--~ 170 (309)
... .+...++..+..... ..+.||+|||+|.+... ..+.|+..++... .
T Consensus 122 ~~~~~~~~g~~~~~l~~~f~~a~~---------~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~ 192 (495)
T TIGR01241 122 SDFVEMFVGVGASRVRDLFEQAKK---------NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT 192 (495)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHh---------cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC
Confidence 421 112233333333221 14689999999987532 1234455554332 2
Q ss_pred CceEEEEecCCcccchhhhc--ce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 021660 171 NTRFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQST 246 (309)
Q Consensus 171 ~~~~i~~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g-~~r~~~~~l~~~ 246 (309)
...+|++||.++.+++++.+ || ..+.++.|+.++..++++.++...... ++..+..+++.+.| +.+.+.++++.+
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgadl~~l~~eA 271 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSGADLANLLNEA 271 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCHHHHHHHHHHH
Confidence 45677788999999999987 66 779999999999999999988765443 34557788988876 445555555544
Q ss_pred Hhh-----cCCcCHHHHHhhhC
Q 021660 247 HMA-----SQQITEEAVYLCTG 263 (309)
Q Consensus 247 ~~~-----~~~i~~~~v~~~~~ 263 (309)
+.. ...|+.+++..++.
T Consensus 272 ~~~a~~~~~~~i~~~~l~~a~~ 293 (495)
T TIGR01241 272 ALLAARKNKTEITMNDIEEAID 293 (495)
T ss_pred HHHHHHcCCCCCCHHHHHHHHH
Confidence 432 24588888887775
No 100
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.79 E-value=2.4e-17 Score=147.34 Aligned_cols=200 Identities=16% Similarity=0.155 Sum_probs=134.6
Q ss_pred CCccccccChHHHHHHHHHHh---------c-CCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCC----
Q 021660 50 QSLADVAAHRDIVDTIDRLTS---------E-NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD---- 115 (309)
Q Consensus 50 ~~~~~~ig~~~~~~~l~~~~~---------~-~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~---- 115 (309)
..++++.|.+.+++.+..... + ..+..+||+||||||||.+|+++++++ +..++.++....
T Consensus 225 ~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~-----~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 225 EKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW-----QLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh-----CCCEEEEEhHHhcccc
Confidence 468899998888876665321 1 122349999999999999999999998 666666665431
Q ss_pred --cchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHH------------HHHHHHHHHHHhcCCceEEEEecCC
Q 021660 116 --RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD------------AQFALRRVIEKYTKNTRFALICNQV 181 (309)
Q Consensus 116 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~------------~~~~l~~~l~~~~~~~~~i~~~~~~ 181 (309)
.+...++..+..... ..+.||+|||+|.+... ....|+..+++......+|.+||..
T Consensus 300 vGese~~l~~~f~~A~~---------~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~ 370 (489)
T CHL00195 300 VGESESRMRQMIRIAEA---------LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNI 370 (489)
T ss_pred cChHHHHHHHHHHHHHh---------cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCCh
Confidence 112223333222111 15789999999977531 1345666777655566777888999
Q ss_pred cccchhhhc--ce-eEEEecCCChHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhcCCHHHHHH-HHHHHHhh----cCC
Q 021660 182 NKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLD-VTEGGLAALVRLCNGDMRKALN-ILQSTHMA----SQQ 252 (309)
Q Consensus 182 ~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~l~~i~~~~~g~~r~~~~-~l~~~~~~----~~~ 252 (309)
+.+++++.+ || ..+.++.|+.++..++++.++++.+.. .++..++.+++.+.|-.+.-+. .+..+... ...
T Consensus 371 ~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~~ 450 (489)
T CHL00195 371 DLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKRE 450 (489)
T ss_pred hhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 999999976 78 789999999999999999999886543 3456688999998764433333 33333221 244
Q ss_pred cCHHHHHhhhC
Q 021660 253 ITEEAVYLCTG 263 (309)
Q Consensus 253 i~~~~v~~~~~ 263 (309)
++.+++..++.
T Consensus 451 lt~~dl~~a~~ 461 (489)
T CHL00195 451 FTTDDILLALK 461 (489)
T ss_pred cCHHHHHHHHH
Confidence 66666555554
No 101
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=99.79 E-value=3.2e-17 Score=141.91 Aligned_cols=224 Identities=18% Similarity=0.250 Sum_probs=172.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccCcc-cccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCC
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGAQY-HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAM 153 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l 153 (309)
+.++|||+...-+...+..+.+.+..+.. ...+..++..+. +.+...+.. ..+.+ +.. ++++|+|++++.+
T Consensus 2 ~~yll~G~e~~l~~~~~~~l~~~~~~~~~~~fn~~~~d~~~~---~~~~~~~~~-~~t~p--ff~--~~rlVvv~~~~~~ 73 (326)
T PRK07452 2 PIYLYWGEDDFALNQAIEKLIDQVVDPEWKSFNYSRLDGDDA---DQAIQALNE-AMTPP--FGS--GGRLVWLKNSPLC 73 (326)
T ss_pred CEEEEEcChHHHHHHHHHHHHHHhCCchhhhcchhhcCCccc---hHHHHHHHH-hcCCC--CCC--CceEEEEeCchhh
Confidence 56899999998888888888877643322 334444554332 112233333 22222 222 6899999997654
Q ss_pred ---CHHHHHHHHHHHHHhcCCceEEEEec-CCc---ccchhhhcceeEEEecCC---ChHHHHHHHHHHHHHcCCCCCHH
Q 021660 154 ---TKDAQFALRRVIEKYTKNTRFALICN-QVN---KIIPALQSRCTRFRFAPL---EPVHVTERLKHVIEAEGLDVTEG 223 (309)
Q Consensus 154 ---~~~~~~~l~~~l~~~~~~~~~i~~~~-~~~---~l~~~l~~r~~~i~~~~~---~~~~~~~~l~~~~~~~~~~~~~~ 223 (309)
..+..+.|..+++.+++.+++|+++. ..+ +..+.+...+.+..|.++ +.+++..|+..++++.|+.++++
T Consensus 74 ~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~g~~i~~~ 153 (326)
T PRK07452 74 QGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFSLIPPWDTEGLKQLVERTAQELGVKLTPE 153 (326)
T ss_pred ccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHceeEEEecCCCcccHHHHHHHHHHHHHHcCCCCCHH
Confidence 55667889999999888888888653 322 344556666677777655 45679999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhh--c--CCcCHHHHHhhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q 021660 224 GLAALVRLCNGDMRKALNILQSTHMA--S--QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLA 299 (309)
Q Consensus 224 ~l~~i~~~~~g~~r~~~~~l~~~~~~--~--~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 299 (309)
+++.+++.+++|++.+.+.+++++.+ + +.||.++|..++... ..++|++++++..++...++..++.++ ..|.+
T Consensus 154 a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~~~-~~~if~l~dai~~~~~~~A~~~l~~L~-~~g~~ 231 (326)
T PRK07452 154 AAELLAEAVGNDSRRLYNELEKLALYAENSTKPISAEEVKALVSNT-TQNSLQLADALLQGNTGKALALLDDLL-DANEP 231 (326)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhccC-cCcHHHHHHHHHCCCHHHHHHHHHHHH-HCCCc
Confidence 99999999999999999999999987 2 369999999999876 468999999999999999999999999 99999
Q ss_pred HHHHHHHhh
Q 021660 300 LVDIVREVT 308 (309)
Q Consensus 300 ~~~~~~~l~ 308 (309)
|..|++.|.
T Consensus 232 p~~il~~l~ 240 (326)
T PRK07452 232 ALRIVATLT 240 (326)
T ss_pred HHHHHHHHH
Confidence 999998875
No 102
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.1e-17 Score=148.59 Aligned_cols=224 Identities=17% Similarity=0.210 Sum_probs=154.0
Q ss_pred cCCCCccccccChHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecC
Q 021660 47 YRPQSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 113 (309)
Q Consensus 47 ~~p~~~~~~ig~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 113 (309)
....+|+++-|.++++..+...+.. .++..+|||||||||||++|+++|++. ..+|+.+...
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~-----~~nFlsvkgp 502 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA-----GMNFLSVKGP 502 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh-----cCCeeeccCH
Confidence 3455899999999999999877642 233449999999999999999999998 6667766544
Q ss_pred C------CcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHH-----------HHHHHHHHHHHhc--CCceE
Q 021660 114 D------DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD-----------AQFALRRVIEKYT--KNTRF 174 (309)
Q Consensus 114 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~-----------~~~~l~~~l~~~~--~~~~~ 174 (309)
. ..+...++..+.+.... .+.||++||+|.+..+ ..+.|+.-|+... .++.+
T Consensus 503 EL~sk~vGeSEr~ir~iF~kAR~~---------aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~V 573 (693)
T KOG0730|consen 503 ELFSKYVGESERAIREVFRKARQV---------APCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLV 573 (693)
T ss_pred HHHHHhcCchHHHHHHHHHHHhhc---------CCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEE
Confidence 3 22333444444444332 5689999999988533 2455666666443 45667
Q ss_pred EEEecCCcccchhhhc--ce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCH-HHHHHHHHHHHhh
Q 021660 175 ALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEG-GLAALVRLCNGDM-RKALNILQSTHMA 249 (309)
Q Consensus 175 i~~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~l~~i~~~~~g~~-r~~~~~l~~~~~~ 249 (309)
|.+||.++.+++++.+ |+ ..+++++|+.+...+|++..+++- +++++ .++.|++.+.|.- ..+..+|+.++..
T Consensus 574 iAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm--p~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~ 651 (693)
T KOG0730|consen 574 IAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM--PFSEDVDLEELAQATEGYSGAEIVAVCQEAALL 651 (693)
T ss_pred EeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcC--CCCccccHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 7788999999999999 77 889999999999999999988754 55554 7899999887644 4455566777664
Q ss_pred c--CCcCHHHHHhhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 021660 250 S--QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMK 293 (309)
Q Consensus 250 ~--~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 293 (309)
+ +.|. .......++.+.++++...-...-++.++++.
T Consensus 652 a~~e~i~-------a~~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa 690 (693)
T KOG0730|consen 652 ALRESIE-------ATEITWQHFEEALKAVRPSLTSELLEKYEDFA 690 (693)
T ss_pred HHHHhcc-------cccccHHHHHHHHHhhcccCCHHHHHHHHHHh
Confidence 3 2222 22233344445555555554455555555443
No 103
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.79 E-value=1.4e-17 Score=138.03 Aligned_cols=158 Identities=18% Similarity=0.238 Sum_probs=126.7
Q ss_pred HHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCc-----------ccccEEEEecCC---CcchHHHHHH
Q 021660 60 DIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ-----------YHNMILELNASD---DRGIDVVRQQ 124 (309)
Q Consensus 60 ~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~-----------~~~~~~~~~~~~---~~~~~~~~~~ 124 (309)
...+.+.+.+..++.+| ++|+||+|+||+++|..+++.+.|.. ...++..+.+.. ..+++.++..
T Consensus 4 ~~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l 83 (290)
T PRK05917 4 AAWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAI 83 (290)
T ss_pred HHHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHH
Confidence 45678888999998888 89999999999999999999998842 344555554432 2456777766
Q ss_pred HHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEecCCChHH
Q 021660 125 IQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVH 204 (309)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~l~~r~~~i~~~~~~~~~ 204 (309)
...+...+.. .+.+++|||++|.+..+.++.|++.+|++|+++.+|++|+....++++++|||+.+.|+++.
T Consensus 84 ~~~~~~~p~e-----~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~~--- 155 (290)
T PRK05917 84 KKQIWIHPYE-----SPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPMEE--- 155 (290)
T ss_pred HHHHhhCccC-----CCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccchh---
Confidence 6555443222 26899999999999999999999999999999999999999999999999999999998762
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHH
Q 021660 205 VTERLKHVIEAEGLDVTEGGLAALVRLCNGDMR 237 (309)
Q Consensus 205 ~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r 237 (309)
...++++.+..++..++|+++
T Consensus 156 ------------~~~i~~~~~~~l~~~~~g~~~ 176 (290)
T PRK05917 156 ------------KTLVSKEDIAYLIGYAQGKES 176 (290)
T ss_pred ------------ccCCCHHHHHHHHHHhCCChh
Confidence 114677777778888888774
No 104
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.7e-17 Score=143.51 Aligned_cols=222 Identities=20% Similarity=0.309 Sum_probs=158.5
Q ss_pred hhhhcCCCCccccccChHHHHHHHHH----HhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcch
Q 021660 43 WVEKYRPQSLADVAAHRDIVDTIDRL----TSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 118 (309)
Q Consensus 43 ~~~~~~p~~~~~~ig~~~~~~~l~~~----~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 118 (309)
+.+.|-|.. +.+++..+..+... +.+..+.+++++|+||||||.+++.+++++........++.+||......
T Consensus 10 l~~~~iP~~---l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~ 86 (366)
T COG1474 10 LLEDYIPEE---LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTP 86 (366)
T ss_pred cCCCCCccc---ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCH
Confidence 334555544 77787777766554 45667777999999999999999999999977666666888998876555
Q ss_pred HHHHHHHHHhh-hccccc-------------cCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcC---CceEEEEecCC
Q 021660 119 DVVRQQIQDFA-STQSFS-------------FGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTK---NTRFALICNQV 181 (309)
Q Consensus 119 ~~~~~~~~~~~-~~~~~~-------------~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~---~~~~i~~~~~~ 181 (309)
..+...+.... ..+... +.......+|++||+|.|.....+.|+.++..... ...+|+++|..
T Consensus 87 ~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~ 166 (366)
T COG1474 87 YQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDD 166 (366)
T ss_pred HHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccH
Confidence 44444433322 111110 11223577999999999987655677777664432 34566667765
Q ss_pred c---ccchhhhcce--eEEEecCCChHHHHHHHHHHHHHc--CCCCCHHHHHHHHHH---hcCCHHHHHHHHHHHHhhc-
Q 021660 182 N---KIIPALQSRC--TRFRFAPLEPVHVTERLKHVIEAE--GLDVTEGGLAALVRL---CNGDMRKALNILQSTHMAS- 250 (309)
Q Consensus 182 ~---~l~~~l~~r~--~~i~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~l~~i~~~---~~g~~r~~~~~l~~~~~~~- 250 (309)
+ .+.+.+.+++ ..|.|+|++.+|+..++..+++.. ...+++++++.+++. .+||.|.++.+|+.++..+
T Consensus 167 ~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe 246 (366)
T COG1474 167 KFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAE 246 (366)
T ss_pred HHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH
Confidence 3 5667777776 558899999999999999999853 345788888777754 4789999999999888765
Q ss_pred ----CCcCHHHHHhhhCCCCh
Q 021660 251 ----QQITEEAVYLCTGNPLP 267 (309)
Q Consensus 251 ----~~i~~~~v~~~~~~~~~ 267 (309)
..++.++++.+....+.
T Consensus 247 ~~~~~~v~~~~v~~a~~~~~~ 267 (366)
T COG1474 247 REGSRKVSEDHVREAQEEIER 267 (366)
T ss_pred hhCCCCcCHHHHHHHHHHhhH
Confidence 57999999888544433
No 105
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.79 E-value=8.3e-18 Score=136.32 Aligned_cols=190 Identities=18% Similarity=0.296 Sum_probs=128.2
Q ss_pred Cccccc-c--ChHHHHHHHHHHhcCCC--CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHH
Q 021660 51 SLADVA-A--HRDIVDTIDRLTSENRL--PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQI 125 (309)
Q Consensus 51 ~~~~~i-g--~~~~~~~l~~~~~~~~~--~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (309)
+|+.++ | +..+...+......... ..++||||+|+|||+|++++++++.....+..++.++... ....+...+
T Consensus 6 tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~--f~~~~~~~~ 83 (219)
T PF00308_consen 6 TFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEE--FIREFADAL 83 (219)
T ss_dssp SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHH--HHHHHHHHH
T ss_pred ccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHH--HHHHHHHHH
Confidence 466665 4 45556666666555332 3499999999999999999999986544444444444332 111111111
Q ss_pred H-----HhhhccccccCCCCccEEEEEeCCCCCCHHH--HHHHHHHHHHhc-CCceEEEEecCC----cccchhhhcce-
Q 021660 126 Q-----DFASTQSFSFGVKASVKLVLLDEADAMTKDA--QFALRRVIEKYT-KNTRFALICNQV----NKIIPALQSRC- 192 (309)
Q Consensus 126 ~-----~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~--~~~l~~~l~~~~-~~~~~i~~~~~~----~~l~~~l~~r~- 192 (309)
. .+... + ....+|+|||++.+.... +..|+.+++... ....+|++++.. ..+.+.+.+|+
T Consensus 84 ~~~~~~~~~~~----~---~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~ 156 (219)
T PF00308_consen 84 RDGEIEEFKDR----L---RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLS 156 (219)
T ss_dssp HTTSHHHHHHH----H---CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHH
T ss_pred Hcccchhhhhh----h---hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHh
Confidence 1 11110 0 146799999999998654 788999998753 345677777443 24567888886
Q ss_pred --eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 021660 193 --TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA 249 (309)
Q Consensus 193 --~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~ 249 (309)
..+.+.+|+.++...++++++...|+.+++++++.|+++..+|+|.+...|..+...
T Consensus 157 ~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l~~l~~~ 215 (219)
T PF00308_consen 157 WGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGALNRLDAY 215 (219)
T ss_dssp CSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHHHHHHHH
T ss_pred hcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999887654
No 106
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.78 E-value=2.2e-17 Score=149.05 Aligned_cols=206 Identities=13% Similarity=0.144 Sum_probs=141.9
Q ss_pred CccccccCh---HHHHHHHHHHhcC-CC-CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCc--chHHHHH
Q 021660 51 SLADVAAHR---DIVDTIDRLTSEN-RL-PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR--GIDVVRQ 123 (309)
Q Consensus 51 ~~~~~ig~~---~~~~~l~~~~~~~-~~-~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 123 (309)
+|++|+... .....+..+.... .. ..++|||++|+|||+|++++++.+.....+..+..++..... ....+..
T Consensus 286 TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~ 365 (617)
T PRK14086 286 TFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRD 365 (617)
T ss_pred CHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHh
Confidence 677777422 2333445544432 12 239999999999999999999998543223334444433210 0111111
Q ss_pred -HHHHhhhccccccCCCCccEEEEEeCCCCCCH--HHHHHHHHHHHHhcC-CceEEEEecCCc----ccchhhhcce---
Q 021660 124 -QIQDFASTQSFSFGVKASVKLVLLDEADAMTK--DAQFALRRVIEKYTK-NTRFALICNQVN----KIIPALQSRC--- 192 (309)
Q Consensus 124 -~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~--~~~~~l~~~l~~~~~-~~~~i~~~~~~~----~l~~~l~~r~--- 192 (309)
....+... + ....+|+|||++.+.. ..+..|+.+++.... +..+|++++... .+.+.|.+|+
T Consensus 366 ~~~~~f~~~----y---~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~G 438 (617)
T PRK14086 366 GKGDSFRRR----Y---REMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWG 438 (617)
T ss_pred ccHHHHHHH----h---hcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcC
Confidence 01111110 1 1467999999999864 346778888886644 456777776543 5678899997
Q ss_pred eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc----CCcCHHHHHhhhC
Q 021660 193 TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS----QQITEEAVYLCTG 263 (309)
Q Consensus 193 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~----~~i~~~~v~~~~~ 263 (309)
.++.+.+|+.+....+|+++++..++.++++++++|+++..+|+|.+...|..+...+ ..||.+.++.++.
T Consensus 439 Lvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~~~~itl~la~~vL~ 513 (617)
T PRK14086 439 LITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLR 513 (617)
T ss_pred ceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHH
Confidence 7799999999999999999999999999999999999999999999999998776433 5688887776664
No 107
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.78 E-value=1.2e-17 Score=148.71 Aligned_cols=205 Identities=11% Similarity=0.192 Sum_probs=141.0
Q ss_pred Cccccc-cC--hHHHHHHHHHHhcCC-CCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHH-
Q 021660 51 SLADVA-AH--RDIVDTIDRLTSENR-LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQI- 125 (309)
Q Consensus 51 ~~~~~i-g~--~~~~~~l~~~~~~~~-~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 125 (309)
+|+.|+ |. ..+...+.++..+.. ...++||||+|+|||+|++++++++.....+..+..+++.+ ....+...+
T Consensus 103 tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~--f~~~~~~~~~ 180 (440)
T PRK14088 103 TFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK--FLNDLVDSMK 180 (440)
T ss_pred cccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH--HHHHHHHHHh
Confidence 577776 42 233445555554332 33499999999999999999999986544444455554432 111111111
Q ss_pred ----HHhhhccccccCCCCccEEEEEeCCCCCCH--HHHHHHHHHHHHhcC-CceEEEEecCCc----ccchhhhcce--
Q 021660 126 ----QDFASTQSFSFGVKASVKLVLLDEADAMTK--DAQFALRRVIEKYTK-NTRFALICNQVN----KIIPALQSRC-- 192 (309)
Q Consensus 126 ----~~~~~~~~~~~~~~~~~~lliiDe~~~l~~--~~~~~l~~~l~~~~~-~~~~i~~~~~~~----~l~~~l~~r~-- 192 (309)
..+... +. ....+|+|||++.+.. ..+..|+.+++.... ...+|++++..+ .+.+.+.+|+
T Consensus 181 ~~~~~~f~~~----~~--~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~ 254 (440)
T PRK14088 181 EGKLNEFREK----YR--KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQM 254 (440)
T ss_pred cccHHHHHHH----HH--hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhc
Confidence 111110 00 1367999999998753 245677777775443 345666665332 3456788887
Q ss_pred -eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc----CCcCHHHHHhhhC
Q 021660 193 -TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS----QQITEEAVYLCTG 263 (309)
Q Consensus 193 -~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~----~~i~~~~v~~~~~ 263 (309)
..+.+.+|+.+....++++++...++.++++++++|++++.||+|.+...+..+...+ ..+|.+.+.+++.
T Consensus 255 gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~ 330 (440)
T PRK14088 255 GLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLK 330 (440)
T ss_pred CceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999998776433 5788888877764
No 108
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.78 E-value=4.5e-17 Score=140.42 Aligned_cols=207 Identities=16% Similarity=0.238 Sum_probs=151.4
Q ss_pred Ccccccc---ChHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCc--chHHHHH
Q 021660 51 SLADVAA---HRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR--GIDVVRQ 123 (309)
Q Consensus 51 ~~~~~ig---~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 123 (309)
+|+.||. +..+......+.... ..+.++||||.|.|||+|++++++.....+....++.+....-. ....++.
T Consensus 85 tFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~ 164 (408)
T COG0593 85 TFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRD 164 (408)
T ss_pred chhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHh
Confidence 3455444 444455555665543 23349999999999999999999999877777777766655421 1111111
Q ss_pred -HHHHhhhccccccCCCCccEEEEEeCCCCCCH--HHHHHHHHHHHHhcCCc-eEEEEecCCc----ccchhhhcce---
Q 021660 124 -QIQDFASTQSFSFGVKASVKLVLLDEADAMTK--DAQFALRRVIEKYTKNT-RFALICNQVN----KIIPALQSRC--- 192 (309)
Q Consensus 124 -~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~--~~~~~l~~~l~~~~~~~-~~i~~~~~~~----~l~~~l~~r~--- 192 (309)
...++.... +-.+++|||++.+.. ..++.|+..++...... .+|++++..+ .+.+.|++|+
T Consensus 165 ~~~~~Fk~~y--------~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~G 236 (408)
T COG0593 165 NEMEKFKEKY--------SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWG 236 (408)
T ss_pred hhHHHHHHhh--------ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhce
Confidence 122222111 246899999999874 45888999998765444 6667775544 3457888886
Q ss_pred eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc----CCcCHHHHHhhhCCC
Q 021660 193 TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS----QQITEEAVYLCTGNP 265 (309)
Q Consensus 193 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~----~~i~~~~v~~~~~~~ 265 (309)
..+.+.||+.+....+|.+.+...++.++++++.+++++...|+|.+...|.++...+ ..||.+.+.+++...
T Consensus 237 l~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~ 313 (408)
T COG0593 237 LVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDL 313 (408)
T ss_pred eEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHh
Confidence 7799999999999999999999999999999999999999999999999998777654 468888888877543
No 109
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.1e-17 Score=146.92 Aligned_cols=179 Identities=23% Similarity=0.281 Sum_probs=137.6
Q ss_pred CccccccChHHHHHHHHHHhc-----------CCCC-eEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCC---
Q 021660 51 SLADVAAHRDIVDTIDRLTSE-----------NRLP-HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD--- 115 (309)
Q Consensus 51 ~~~~~ig~~~~~~~l~~~~~~-----------~~~~-~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~--- 115 (309)
+|.++-|.+..+..+...+.. -.++ .+||+||||||||.||++++.++ .+.++.++.+..
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel-----~vPf~~isApeivSG 262 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL-----GVPFLSISAPEIVSG 262 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc-----CCceEeecchhhhcc
Confidence 589999999999988887642 1223 39999999999999999999998 777887776542
Q ss_pred ---cchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHH-----------HHHHHHHHHHhc------CCceEE
Q 021660 116 ---RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDA-----------QFALRRVIEKYT------KNTRFA 175 (309)
Q Consensus 116 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~-----------~~~l~~~l~~~~------~~~~~i 175 (309)
.....+++.+.+.... .++|++|||+|.+.+.. ...|+..|+++. ..+.+|
T Consensus 263 vSGESEkkiRelF~~A~~~---------aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVI 333 (802)
T KOG0733|consen 263 VSGESEKKIRELFDQAKSN---------APCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVI 333 (802)
T ss_pred cCcccHHHHHHHHHHHhcc---------CCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEE
Confidence 2334556655555432 57899999999997532 356888888653 345677
Q ss_pred EEecCCcccchhhhc--ce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHH
Q 021660 176 LICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQ 244 (309)
Q Consensus 176 ~~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~ 244 (309)
.+||.++.++++|++ || +.|.+.-|+.....+||+.+++...+.- +-....|++.++|.++.-+..|-
T Consensus 334 gATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA~lTPGfVGADL~AL~ 404 (802)
T KOG0733|consen 334 GATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLAKLTPGFVGADLMALC 404 (802)
T ss_pred ecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHHhcCCCccchhHHHHH
Confidence 788999999999987 56 7799999999999999999998665544 33468899999998887776663
No 110
>PRK07914 hypothetical protein; Reviewed
Probab=99.78 E-value=1.3e-16 Score=137.23 Aligned_cols=223 Identities=13% Similarity=0.112 Sum_probs=179.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHcc-Cc-ccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCC
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYG-AQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADA 152 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~ 152 (309)
+.++|+|+.-.-....+..+.+.+.. .+ ...++..++..+... . + +.... +.+ +.. ++++|++++...
T Consensus 6 ~iYll~G~E~~l~~~~~~~i~~~~~~~~~~~~~n~~~~d~~~~~~-~---~-i~~~~-t~p--lF~--~rRlV~v~~~~~ 75 (320)
T PRK07914 6 PLHLVLGDEELLVERAVAAVLRSARQRAGTADVPVSRMRAGDVST-Y---E-LAELL-SPS--LFA--EERVVVLEAAAE 75 (320)
T ss_pred ceEEEEecHHHHHHHHHHHHHHHHhcCcCCCCCceEEeccccCCH-H---H-HHHhc-CCC--CCC--CceEEEEeChHh
Confidence 45999999987777777777776543 23 355667777655322 2 2 33332 222 222 699999999877
Q ss_pred CCHHHHHHHHHHHHHhcCCceEEEEecCCc---ccchhhhcce-eEEEecCC-ChHHHHHHHHHHHHHcCCCCCHHHHHH
Q 021660 153 MTKDAQFALRRVIEKYTKNTRFALICNQVN---KIIPALQSRC-TRFRFAPL-EPVHVTERLKHVIEAEGLDVTEGGLAA 227 (309)
Q Consensus 153 l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~---~l~~~l~~r~-~~i~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~l~~ 227 (309)
+..+..+.|..+++.+++.+++|++++... ++.+.+.... ..+.|.++ +..++..|+..++++.|+.+++++++.
T Consensus 76 ~~~~~~~~l~~~l~~~~~~t~lil~~~~~~~~kk~~K~L~k~g~~~v~~~~~~~~~~l~~wi~~~a~~~g~~i~~~A~~~ 155 (320)
T PRK07914 76 AGKDAAALILSAAADLPPGTVLVVVHSGGGRAKALANQLRKLGAEVHPCARITKAAERADFVRKEFRSLRVKVDDDTVTA 155 (320)
T ss_pred ccHHHHHHHHHHHhCCCCCeEEEEEecCCcchhHHHHHHHHCCCEEEecCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 766667889999999888888888754222 3345666554 58899998 999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhh-cCCcCHHHHHhhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 021660 228 LVRLCNGDMRKALNILQSTHMA-SQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVRE 306 (309)
Q Consensus 228 i~~~~~g~~r~~~~~l~~~~~~-~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 306 (309)
+++++++|+..+.+.++++..+ ++.||.++|..++......++|++++++..++...++..+++++ ..|++|..|++.
T Consensus 156 L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~vf~L~dAi~~g~~~~A~~~l~~L~-~~ge~p~~il~~ 234 (320)
T PRK07914 156 LLDAVGSDLRELASACSQLVADTGGAVDAAAVRRYHSGKAEVKGFDIADKAVAGDVAGAAEALRWAM-MRGEPHVVLADA 234 (320)
T ss_pred HHHHHCccHHHHHHHHHHHhcCCCCCcCHHHHHHHcCCCeechHHHHHHHHHCCCHHHHHHHHHHHH-HCCCchHHHHHH
Confidence 9999999999999999998764 46899999999999999999999999999999999999999999 999999999887
Q ss_pred hh
Q 021660 307 VT 308 (309)
Q Consensus 307 l~ 308 (309)
|.
T Consensus 235 l~ 236 (320)
T PRK07914 235 LA 236 (320)
T ss_pred HH
Confidence 75
No 111
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.78 E-value=3.1e-17 Score=144.27 Aligned_cols=203 Identities=20% Similarity=0.261 Sum_probs=133.6
Q ss_pred CCccccccChHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCc
Q 021660 50 QSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR 116 (309)
Q Consensus 50 ~~~~~~ig~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 116 (309)
..++++.|.+..++.+...+.. ..+.+++|+||||||||++|+++++++ ...++.+++....
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~-----~~~~i~v~~~~l~ 202 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET-----NATFIRVVGSELV 202 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh-----CCCEEEeehHHHh
Confidence 3688999999999988887632 223449999999999999999999997 4556666655321
Q ss_pred c--hHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCC-----------HHHHHHHHHHHHHhc-----CCceEEEEe
Q 021660 117 G--IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT-----------KDAQFALRRVIEKYT-----KNTRFALIC 178 (309)
Q Consensus 117 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~-----------~~~~~~l~~~l~~~~-----~~~~~i~~~ 178 (309)
. .......+....... ....+.+|+|||+|.+. .+.+..+..++.... .+..+|++|
T Consensus 203 ~~~~g~~~~~i~~~f~~a-----~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aT 277 (389)
T PRK03992 203 QKFIGEGARLVRELFELA-----REKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAAT 277 (389)
T ss_pred HhhccchHHHHHHHHHHH-----HhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEec
Confidence 1 001111122221110 01156899999999884 233445666665432 356788889
Q ss_pred cCCcccchhhhc--ce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC-HHHHHHHHHHHHhhc----
Q 021660 179 NQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGD-MRKALNILQSTHMAS---- 250 (309)
Q Consensus 179 ~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~-~r~~~~~l~~~~~~~---- 250 (309)
|..+.+++++.+ || ..+.|++|+.++..++++.+++...+.- +..+..+++.+.|- .+.+..++..++..+
T Consensus 278 n~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~-~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~ 356 (389)
T PRK03992 278 NRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLAD-DVDLEELAELTEGASGADLKAICTEAGMFAIRDD 356 (389)
T ss_pred CChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCC-cCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC
Confidence 999999999886 67 7799999999999999998876544321 24467888887663 344444444444322
Q ss_pred -CCcCHHHHHhhhC
Q 021660 251 -QQITEEAVYLCTG 263 (309)
Q Consensus 251 -~~i~~~~v~~~~~ 263 (309)
..|+.+++.+++.
T Consensus 357 ~~~i~~~d~~~A~~ 370 (389)
T PRK03992 357 RTEVTMEDFLKAIE 370 (389)
T ss_pred CCCcCHHHHHHHHH
Confidence 3466666665553
No 112
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.78 E-value=7e-18 Score=160.80 Aligned_cols=201 Identities=15% Similarity=0.187 Sum_probs=145.9
Q ss_pred ChhhhcCCCCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCc-----ccccEEEEecCCC-
Q 021660 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-----YHNMILELNASDD- 115 (309)
Q Consensus 42 ~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-----~~~~~~~~~~~~~- 115 (309)
+++++.+|..+++++|+++.+..+...+.....++++|+||||||||++++.+++.+.... .+..++.++....
T Consensus 176 ~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ 255 (852)
T TIGR03345 176 DLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQ 255 (852)
T ss_pred hHHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhh
Confidence 3566778999999999999999999998888888899999999999999999999984332 1233443333221
Q ss_pred ---cchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH-----H---HHHHHHHHHHHhcCCceEEEEecCC---
Q 021660 116 ---RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----D---AQFALRRVIEKYTKNTRFALICNQV--- 181 (309)
Q Consensus 116 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~-----~---~~~~l~~~l~~~~~~~~~i~~~~~~--- 181 (309)
.....+...+......... ...+.||+|||+|.+.. . ..+.|...+++ ....+|.+|+..
T Consensus 256 ag~~~~ge~e~~lk~ii~e~~~----~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~IgaTT~~e~~ 329 (852)
T TIGR03345 256 AGASVKGEFENRLKSVIDEVKA----SPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAATTWAEYK 329 (852)
T ss_pred cccccchHHHHHHHHHHHHHHh----cCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEecCHHHHh
Confidence 1222333344443332111 01468999999999863 1 22356666653 356677777642
Q ss_pred --cccchhhhcceeEEEecCCChHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhcC------CHHHHHHHHHHHHh
Q 021660 182 --NKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA----EGLDVTEGGLAALVRLCNG------DMRKALNILQSTHM 248 (309)
Q Consensus 182 --~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~l~~i~~~~~g------~~r~~~~~l~~~~~ 248 (309)
...+++|.+||+.|.+++|+.++...+|+..... .++.++++++..+++.+.+ -|.+++++|+.++.
T Consensus 330 ~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a 408 (852)
T TIGR03345 330 KYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACA 408 (852)
T ss_pred hhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHH
Confidence 3478999999999999999999999997655543 4688999999999999864 69999999988765
No 113
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=99.77 E-value=2.4e-16 Score=136.00 Aligned_cols=231 Identities=21% Similarity=0.238 Sum_probs=175.4
Q ss_pred HHHHHHhcCCC-CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCcc
Q 021660 64 TIDRLTSENRL-PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASV 142 (309)
Q Consensus 64 ~l~~~~~~~~~-~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (309)
.+...++.+.. +.++|+|..-.-....+..+.+.+..++.... ...+. .. +.+ +.....+.+. |+ ++
T Consensus 5 ~l~~~lk~~~l~~vyll~GeE~yli~~~~~~i~~~~~~~~~~~~-~~~~~---~~---~~~-i~~~~~t~pl-F~---~~ 72 (328)
T PRK08487 5 ELDTLLKQNKLPNAFLLYGEDEFQIELYAKKISEKFKPENELKT-LYFDE---YD---FEQ-AKDFLSQSSL-FG---GK 72 (328)
T ss_pred HHHHHHhcCCCCceEEEecCchhHHHHHHHHHHHHhcCchHhhh-hchhh---cc---HHH-HHHHHhcccc-cC---Cc
Confidence 45566666644 45999999988888888888777643332221 21221 11 222 3333333332 22 68
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcc---cchhhhcc--eeEEEecCCChHHHHHHHHHHHHHcC
Q 021660 143 KLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNK---IIPALQSR--CTRFRFAPLEPVHVTERLKHVIEAEG 217 (309)
Q Consensus 143 ~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~---l~~~l~~r--~~~i~~~~~~~~~~~~~l~~~~~~~~ 217 (309)
++|++.+.+.........|..+++.+++..++|++....++ +.+.+... ...+.|.+++..++..|+..++++.|
T Consensus 73 rlViv~~~~~~~~~~~~~L~~~l~~~~~~~~lv~~~~~~~k~kkl~k~~~~~k~~~~v~~~~~~~~~l~~~i~~~~~~~g 152 (328)
T PRK08487 73 NLLIIKLDKKIPKKELKLLIELCEKNSDNYFIIELYGADSKTKDIEKLFQKKDEAVFVRFFKPNAREALELLQERAKELG 152 (328)
T ss_pred eEEEEecccccCHHHHHHHHHHHhcCCCCEEEEEecCCcchhHHHHHHhccCCCceEEEeeCCCHHHHHHHHHHHHHHhC
Confidence 99999988776666678889999887766555554443332 22233222 46789999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcCHHHHHhhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 021660 218 LDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKG 297 (309)
Q Consensus 218 ~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 297 (309)
+.+++++++.+++++++|+..+.+.|++++.+.+.||.++|..++......++|++++++..++ .++..+++++ ..|
T Consensus 153 ~~i~~~a~~~L~~~~g~dl~~l~~ELeKL~ly~~~It~edV~~~v~~~~e~~vF~l~dai~~g~--~a~~~l~~L~-~~g 229 (328)
T PRK08487 153 LDIDQNALNHLYFIHNEDLALAANELEKLAILNEPITLKDIQELVFGLGSVSFEDFFEKLLNKK--DIKDDLEKLL-EEG 229 (328)
T ss_pred CCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCCHHHHHHHhcccccccHHHHHHHHHCCC--cHHHHHHHHH-HCC
Confidence 9999999999999999999999999999999988999999999999999999999999999998 5888899999 899
Q ss_pred CCHHHHHHHhhC
Q 021660 298 LALVDIVREVTM 309 (309)
Q Consensus 298 ~~~~~~~~~l~~ 309 (309)
.+|..|++.|.+
T Consensus 230 ~~pi~Il~~L~r 241 (328)
T PRK08487 230 FNEIALLNSLER 241 (328)
T ss_pred CCHHHHHHHHHH
Confidence 999999988753
No 114
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=99.77 E-value=7.1e-17 Score=135.70 Aligned_cols=174 Identities=18% Similarity=0.267 Sum_probs=136.2
Q ss_pred HHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCc--------ccccEEEEec-CCCcchHHHHHHHHHhh
Q 021660 60 DIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ--------YHNMILELNA-SDDRGIDVVRQQIQDFA 129 (309)
Q Consensus 60 ~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~--------~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 129 (309)
.+++.+.+.+..++.+| ++|+|+.|+||++++..+++.+.|.. ...++..++. ......+.+++....+.
T Consensus 3 ~~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~ 82 (299)
T PRK07132 3 NWIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLY 82 (299)
T ss_pred hHHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhc
Confidence 46778899999988888 88999999999999999999996632 2224444542 22345566665555543
Q ss_pred hccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEecCCChHHHHHHH
Q 021660 130 STQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERL 209 (309)
Q Consensus 130 ~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l 209 (309)
..+. ...+++++|||+++.+.....+.|++.++++|+.+.+|++++...++.+++.+||+.+.|.+++.+++..++
T Consensus 83 ~~~~----~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l 158 (299)
T PRK07132 83 FSSF----VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKL 158 (299)
T ss_pred cCCc----ccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHH
Confidence 2211 112789999999999999999999999999999999999999889999999999999999999999999888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHH
Q 021660 210 KHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQ 244 (309)
Q Consensus 210 ~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~ 244 (309)
... + ++++....++..++ +++.++..+.
T Consensus 159 ~~~----~--~~~~~a~~~a~~~~-~~~~a~~~~~ 186 (299)
T PRK07132 159 LSK----N--KEKEYNWFYAYIFS-NFEQAEKYIN 186 (299)
T ss_pred HHc----C--CChhHHHHHHHHcC-CHHHHHHHHh
Confidence 753 3 66666666676666 5988887753
No 115
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.77 E-value=3e-17 Score=144.53 Aligned_cols=207 Identities=19% Similarity=0.264 Sum_probs=135.9
Q ss_pred hhhhcCCCCccccccChHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEE
Q 021660 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILE 109 (309)
Q Consensus 43 ~~~~~~p~~~~~~ig~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~ 109 (309)
+.++..+.++.++.|.+..++.+..++.. ..+.+++|+||||||||++|+++++++ ...++.
T Consensus 173 ~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el-----~~~fi~ 247 (438)
T PTZ00361 173 KVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET-----SATFLR 247 (438)
T ss_pred ccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh-----CCCEEE
Confidence 34566667899999999999988887642 123349999999999999999999997 445565
Q ss_pred EecCCCc------chHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH-----------HHHHHHHHHHHHh----
Q 021660 110 LNASDDR------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKY---- 168 (309)
Q Consensus 110 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~-----------~~~~~l~~~l~~~---- 168 (309)
+...... +...+...+..... ..+.+|+|||+|.+.. +.+..+..++...
T Consensus 248 V~~seL~~k~~Ge~~~~vr~lF~~A~~---------~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~ 318 (438)
T PTZ00361 248 VVGSELIQKYLGDGPKLVRELFRVAEE---------NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD 318 (438)
T ss_pred EecchhhhhhcchHHHHHHHHHHHHHh---------CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc
Confidence 5544321 11112222221111 1578999999987642 1233445555432
Q ss_pred -cCCceEEEEecCCcccchhhhc--ce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC-CHHHHHHHH
Q 021660 169 -TKNTRFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNIL 243 (309)
Q Consensus 169 -~~~~~~i~~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g-~~r~~~~~l 243 (309)
..+..+|++||..+.+++++.+ |+ ..|.|++|+.++..++++.++.+..+.- +..++.++..+.| +...+..++
T Consensus 319 ~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~-dvdl~~la~~t~g~sgAdI~~i~ 397 (438)
T PTZ00361 319 SRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAE-DVDLEEFIMAKDELSGADIKAIC 397 (438)
T ss_pred ccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCc-CcCHHHHHHhcCCCCHHHHHHHH
Confidence 3466788899999999999875 66 7899999999999999998877654322 2345666766644 333344444
Q ss_pred HHHHhhc-----CCcCHHHHHhhhCC
Q 021660 244 QSTHMAS-----QQITEEAVYLCTGN 264 (309)
Q Consensus 244 ~~~~~~~-----~~i~~~~v~~~~~~ 264 (309)
..++..+ ..|+.+++..++..
T Consensus 398 ~eA~~~Alr~~r~~Vt~~D~~~A~~~ 423 (438)
T PTZ00361 398 TEAGLLALRERRMKVTQADFRKAKEK 423 (438)
T ss_pred HHHHHHHHHhcCCccCHHHHHHHHHH
Confidence 4443322 45777777766543
No 116
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.77 E-value=2.4e-16 Score=134.67 Aligned_cols=165 Identities=22% Similarity=0.342 Sum_probs=124.0
Q ss_pred hHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCcc--------------------cccEEEEecCC---
Q 021660 59 RDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY--------------------HNMILELNASD--- 114 (309)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~--------------------~~~~~~~~~~~--- 114 (309)
....+.+... .++.++ ++|+||+|+|||++++.+++.+.|... ..++..+.+..
T Consensus 7 ~~~w~~l~~~--~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~ 84 (325)
T PRK08699 7 QEQWRQIAEH--WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEP 84 (325)
T ss_pred HHHHHHHHHh--cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccc
Confidence 3455555554 346666 999999999999999999999986432 35566666532
Q ss_pred -------CcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchh
Q 021660 115 -------DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPA 187 (309)
Q Consensus 115 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~ 187 (309)
..+++.++.........+. ..+++|++||+++.++...++.|++.+++++..+.+|++|+....+.+.
T Consensus 85 ~~g~~~~~I~id~iR~l~~~~~~~p~-----~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~t 159 (325)
T PRK08699 85 ENGRKLLQIKIDAVREIIDNVYLTSV-----RGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPT 159 (325)
T ss_pred cccccCCCcCHHHHHHHHHHHhhCcc-----cCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHH
Confidence 2356777775554433222 1268899999999999999999999999998888899999999999999
Q ss_pred hhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHH
Q 021660 188 LQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRK 238 (309)
Q Consensus 188 l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~ 238 (309)
+.+||+.+.|.+++.+++..+|... ++. ... .. ...++|.+..
T Consensus 160 i~SRc~~~~~~~~~~~~~~~~L~~~----~~~--~~~-~~-l~~~~g~p~~ 202 (325)
T PRK08699 160 IKSRCRKMVLPAPSHEEALAYLRER----GVA--EPE-ER-LAFHSGAPLF 202 (325)
T ss_pred HHHHhhhhcCCCCCHHHHHHHHHhc----CCC--cHH-HH-HHHhCCChhh
Confidence 9999999999999999999999753 432 221 22 3457777743
No 117
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=99.77 E-value=1.4e-16 Score=132.78 Aligned_cols=172 Identities=19% Similarity=0.313 Sum_probs=134.1
Q ss_pred cChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCc-------------------ccccEEEEecC-CC
Q 021660 57 AHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ-------------------YHNMILELNAS-DD 115 (309)
Q Consensus 57 g~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~-------------------~~~~~~~~~~~-~~ 115 (309)
.++.+++.+.+.+..++.+| ++|+|| +||+++|..+++.+.|.+ ...++..+.+. ..
T Consensus 6 ~q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~ 83 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQV 83 (290)
T ss_pred HHHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCc
Confidence 36788999999999999888 899996 689999999999997753 23345555443 22
Q ss_pred cchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEE
Q 021660 116 RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRF 195 (309)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~l~~r~~~i 195 (309)
..++.+++....+...+.. .+++|+|||++|.+..+..|.|++.+|++++++.+|++|+....+.++++|||+.+
T Consensus 84 I~idqIR~l~~~~~~~p~~-----~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i 158 (290)
T PRK07276 84 IKTDTIRELVKNFSQSGYE-----GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIF 158 (290)
T ss_pred CCHHHHHHHHHHHhhCccc-----CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceee
Confidence 4567788777766554322 26799999999999999999999999999999999999999999999999999999
Q ss_pred EecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHH
Q 021660 196 RFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNIL 243 (309)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l 243 (309)
.|++ +.+++.+++. +.| ++.+....++ ...|+++.++..+
T Consensus 159 ~f~~-~~~~~~~~L~----~~g--~~~~~a~~la-~~~~s~~~A~~l~ 198 (290)
T PRK07276 159 HFPK-NEAYLIQLLE----QKG--LLKTQAELLA-KLAQSTSEAEKLA 198 (290)
T ss_pred eCCC-cHHHHHHHHH----HcC--CChHHHHHHH-HHCCCHHHHHHHh
Confidence 9966 6667766665 335 4444444444 4456899888877
No 118
>CHL00176 ftsH cell division protein; Validated
Probab=99.77 E-value=5.4e-17 Score=149.52 Aligned_cols=199 Identities=21% Similarity=0.266 Sum_probs=137.8
Q ss_pred CCccccccChHHHHHHHHHHh---cC---------CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCc-
Q 021660 50 QSLADVAAHRDIVDTIDRLTS---EN---------RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR- 116 (309)
Q Consensus 50 ~~~~~~ig~~~~~~~l~~~~~---~~---------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~- 116 (309)
..|++++|.++.++.+...+. .. .+.+++|+||||||||++|++++.+. ...++.+++....
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~-----~~p~i~is~s~f~~ 254 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----EVPFFSISGSEFVE 254 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCeeeccHHHHHH
Confidence 478999999988887777653 11 12349999999999999999999987 5556666554311
Q ss_pred -----chHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH-----------HHHHHHHHHHHH---h--cCCceEE
Q 021660 117 -----GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEK---Y--TKNTRFA 175 (309)
Q Consensus 117 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~-----------~~~~~l~~~l~~---~--~~~~~~i 175 (309)
+...++..+..... ..+.||+|||+|.+.. .....+..++.. . .....+|
T Consensus 255 ~~~g~~~~~vr~lF~~A~~---------~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVI 325 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKE---------NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVI 325 (638)
T ss_pred HhhhhhHHHHHHHHHHHhc---------CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEE
Confidence 11222222222211 1578999999998842 222334444433 2 2355677
Q ss_pred EEecCCcccchhhhc--ce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC-CHHHHHHHHHHHHhhc-
Q 021660 176 LICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQSTHMAS- 250 (309)
Q Consensus 176 ~~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g-~~r~~~~~l~~~~~~~- 250 (309)
++||..+.+++++.+ || ..+.+.+|+.++..++++.+++... ..++..+..+++.+.| +.+.+.+++..++..+
T Consensus 326 aaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~-~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~ 404 (638)
T CHL00176 326 AATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK-LSPDVSLELIARRTPGFSGADLANLLNEAAILTA 404 (638)
T ss_pred EecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc-cchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 888998899999886 56 7899999999999999999987743 2346678899999887 6666666666554322
Q ss_pred ----CCcCHHHHHhhhC
Q 021660 251 ----QQITEEAVYLCTG 263 (309)
Q Consensus 251 ----~~i~~~~v~~~~~ 263 (309)
..++.+++..++.
T Consensus 405 r~~~~~It~~dl~~Ai~ 421 (638)
T CHL00176 405 RRKKATITMKEIDTAID 421 (638)
T ss_pred HhCCCCcCHHHHHHHHH
Confidence 4588888887764
No 119
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=99.76 E-value=4.8e-16 Score=135.46 Aligned_cols=234 Identities=18% Similarity=0.234 Sum_probs=177.7
Q ss_pred HHHHHhc--CCCCeEEEECCCCCcHHHHHHHHHHHHccCcc-cccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCc
Q 021660 65 IDRLTSE--NRLPHLLLYGPPGTGKTSTILAVARKLYGAQY-HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS 141 (309)
Q Consensus 65 l~~~~~~--~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (309)
+...+.. +..+.++|||+........+..+.+.+...+. ...+..++..... ..+.+ +.....+.+. |+ +
T Consensus 9 ~~~~l~~~~~~~~~yll~G~e~~li~~~~~~l~~~~~~~~~~~fn~~~~~~~e~~--~~~~~-~~~~~~t~sl-F~---~ 81 (343)
T PRK06585 9 VDRFLARPDPKIRAVLLYGPDRGLVRERARRLAKSVVPDLDDPFAVVRLDGDDLD--ADPAR-LEDEANAISL-FG---G 81 (343)
T ss_pred HHHHHhCCCCCCeEEEEeCCchHHHHHHHHHHHHHhcCCCCCCcceeeccHHHhh--cCHHH-HHHHHhCCCC-CC---C
Confidence 3444443 24466999999998888888888887643321 2334444433211 01222 3233333333 33 5
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCc---ccchhhh--cceeEEEecCCChHHHHHHHHHHHHHc
Q 021660 142 VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVN---KIIPALQ--SRCTRFRFAPLEPVHVTERLKHVIEAE 216 (309)
Q Consensus 142 ~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~---~l~~~l~--~r~~~i~~~~~~~~~~~~~l~~~~~~~ 216 (309)
+++|++.+.+ ....+.|..+++.+++.+++|+.+...+ ++.+.+. ..+..+.|.+++..++..|+..++++.
T Consensus 82 ~rlViv~~~~---~~~~~~L~~~l~~~~~~~~lil~~~~~~~~~kl~k~~~~~~~~~~v~~~~~~~~~l~~~i~~~~~~~ 158 (343)
T PRK06585 82 RRLIWVRAGS---KNLAAALKALLESPPGDAFIVIEAGDLKKGSSLRKLFETAAYAAAIPCYADDERDLARLIDDELAEA 158 (343)
T ss_pred ceEEEEECCc---hhHHHHHHHHHcCCCCCcEEEEEcCCCCcccHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHHHHC
Confidence 7899999654 3445678888988888888887664432 2233332 234678899999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc---CCcCHHHHHhhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 021660 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS---QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMK 293 (309)
Q Consensus 217 ~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~---~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 293 (309)
|+.+++++++.+++.++||++.+.+.|++++.+. +.||.++|..++.......+|++++++..++...++..++.++
T Consensus 159 g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~~~e~~if~l~dai~~~~~~~a~~~l~~ll 238 (343)
T PRK06585 159 GLRITPDARALLVALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDASALSLDDAADAALAGDLAAFERALDRAL 238 (343)
T ss_pred CCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCcccccHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999875 4699999999999999999999999999999999999999999
Q ss_pred HhcCCCHHHHHHHhhC
Q 021660 294 MRKGLALVDIVREVTM 309 (309)
Q Consensus 294 ~~~g~~~~~~~~~l~~ 309 (309)
..|.+|..|++.|.+
T Consensus 239 -~~g~~p~~il~~L~~ 253 (343)
T PRK06585 239 -AEGTAPVLILRAALR 253 (343)
T ss_pred -HcCCCHHHHHHHHHH
Confidence 999999999988753
No 120
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.76 E-value=1.3e-16 Score=139.79 Aligned_cols=200 Identities=21% Similarity=0.255 Sum_probs=133.9
Q ss_pred CCCccccccChHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCC
Q 021660 49 PQSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115 (309)
Q Consensus 49 p~~~~~~ig~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 115 (309)
..+++++.|.+..++.+...+.. ..+.+++|+||||||||++++++++.+ ...++.+.+...
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l-----~~~fi~i~~s~l 215 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT-----TATFIRVVGSEF 215 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc-----CCCEEEEehHHH
Confidence 34789999999999888877631 123449999999999999999999987 455555544321
Q ss_pred ------cchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH-----------HHHHHHHHHHHHh-----cCCce
Q 021660 116 ------RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKY-----TKNTR 173 (309)
Q Consensus 116 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~-----------~~~~~l~~~l~~~-----~~~~~ 173 (309)
.+...+...+.... ...+.+|+|||+|.+.. ..+..+..++... ..+..
T Consensus 216 ~~k~~ge~~~~lr~lf~~A~---------~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~ 286 (398)
T PTZ00454 216 VQKYLGEGPRMVRDVFRLAR---------ENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVK 286 (398)
T ss_pred HHHhcchhHHHHHHHHHHHH---------hcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEE
Confidence 11112222222111 12578999999998742 2233444554432 23567
Q ss_pred EEEEecCCcccchhhhc--ce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC-CHHHHHHHHHHHHhh
Q 021660 174 FALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQSTHMA 249 (309)
Q Consensus 174 ~i~~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g-~~r~~~~~l~~~~~~ 249 (309)
+|++||.++.+++++.+ |+ ..++|+.|+.++...+++.++.+.++.- +..+..+++.+.| +...+.++++.+...
T Consensus 287 VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~-dvd~~~la~~t~g~sgaDI~~l~~eA~~~ 365 (398)
T PTZ00454 287 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSE-EVDLEDFVSRPEKISAADIAAICQEAGMQ 365 (398)
T ss_pred EEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCc-ccCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 88899999999999876 67 7799999999999999998887665442 3346778888765 455555555555543
Q ss_pred c-----CCcCHHHHHhhhC
Q 021660 250 S-----QQITEEAVYLCTG 263 (309)
Q Consensus 250 ~-----~~i~~~~v~~~~~ 263 (309)
+ ..++.+++..++.
T Consensus 366 A~r~~~~~i~~~df~~A~~ 384 (398)
T PTZ00454 366 AVRKNRYVILPKDFEKGYK 384 (398)
T ss_pred HHHcCCCccCHHHHHHHHH
Confidence 2 3567776666553
No 121
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=7.5e-17 Score=134.82 Aligned_cols=233 Identities=16% Similarity=0.158 Sum_probs=154.8
Q ss_pred CccccccChHHHHHHHHHHh----------cCC--CCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCc--
Q 021660 51 SLADVAAHRDIVDTIDRLTS----------ENR--LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR-- 116 (309)
Q Consensus 51 ~~~~~ig~~~~~~~l~~~~~----------~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~-- 116 (309)
.++|+.|..++++.|++++- +.+ ...+|++||||||||.||++++.++ +..|+.++++...
T Consensus 210 kW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc-----~tTFFNVSsstltSK 284 (491)
T KOG0738|consen 210 KWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC-----GTTFFNVSSSTLTSK 284 (491)
T ss_pred ChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh-----cCeEEEechhhhhhh
Confidence 68999999999999988763 222 3349999999999999999999998 5667766665432
Q ss_pred ---chHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH------------HHHHHHHHHHHHhc---C--C-ceEE
Q 021660 117 ---GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK------------DAQFALRRVIEKYT---K--N-TRFA 175 (309)
Q Consensus 117 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~------------~~~~~l~~~l~~~~---~--~-~~~i 175 (309)
..+.+...+..++... .+.+|+|||||.|.. .....|+-.|+... . . +.|+
T Consensus 285 wRGeSEKlvRlLFemARfy--------APStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVL 356 (491)
T KOG0738|consen 285 WRGESEKLVRLLFEMARFY--------APSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVL 356 (491)
T ss_pred hccchHHHHHHHHHHHHHh--------CCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEE
Confidence 1233444455544432 368999999999863 12456776676432 1 2 3344
Q ss_pred EEecCCcccchhhhcce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHH-HHHHHHhhc---
Q 021660 176 LICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALN-ILQSTHMAS--- 250 (309)
Q Consensus 176 ~~~~~~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~-~l~~~~~~~--- 250 (309)
.+||.++.+++++++|+ ..|.++-|+.+....+|+..+... ...++-.++.|++.+.|.-+.-+. .|+.++..+
T Consensus 357 AATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~-~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR 435 (491)
T KOG0738|consen 357 AATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSV-ELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRR 435 (491)
T ss_pred eccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccc-cCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 45789999999999999 778888888888888887766432 233556678888888775554443 334443322
Q ss_pred --CCcCHHHHHhhhCCC-----ChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 021660 251 --QQITEEAVYLCTGNP-----LPKDIEQISYWLLNESFADSFKRISEMKMRKG 297 (309)
Q Consensus 251 --~~i~~~~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 297 (309)
..++.+.+..+.... ...+++.-+..+.......-+..+.+|+..-|
T Consensus 436 ~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~efG 489 (491)
T KOG0738|consen 436 KIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEFG 489 (491)
T ss_pred HHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHhc
Confidence 345555555554332 23445556666665555577788888884334
No 122
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=99.74 E-value=6.6e-16 Score=125.39 Aligned_cols=188 Identities=17% Similarity=0.148 Sum_probs=136.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCc-----------------ccccEEEEecC-CCcchHHHHHHHHHhhhccccccCC
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQ-----------------YHNMILELNAS-DDRGIDVVRQQIQDFASTQSFSFGV 138 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~-----------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (309)
++|+||+|+||..+|..+++.+.|.. ...++..+.+. ...+.+.+++....+......
T Consensus 10 ~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e---- 85 (261)
T PRK05818 10 LLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVE---- 85 (261)
T ss_pred eeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchh----
Confidence 99999999999999999999997652 22344443332 234566777666655432111
Q ss_pred CCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEecCC----------ChHHHHHH
Q 021660 139 KASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPL----------EPVHVTER 208 (309)
Q Consensus 139 ~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~l~~r~~~i~~~~~----------~~~~~~~~ 208 (309)
..+++|+||+++|.+..++.+.|++.+|+||+++.+|++|+....+.++++|||+.+.|+++ +..++.+.
T Consensus 86 ~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~~~~~~~i~~~ 165 (261)
T PRK05818 86 SNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSKEKKVPFKVESNDRYFQYI 165 (261)
T ss_pred cCCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCChhhhcccccccChHHHHHH
Confidence 12589999999999999999999999999999999999999999999999999999999887 45555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCcCHHHHHhhhCCCChHHHHHHHHHH
Q 021660 209 LKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEAVYLCTGNPLPKDIEQISYWL 277 (309)
Q Consensus 209 l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~-~~i~~~~v~~~~~~~~~~~~~~~~~~~ 277 (309)
+.... .+++ .++..++|+...+...++.+.... ..++...+...+..-++..+..++..+
T Consensus 166 L~~~~-----~~d~----~i~~~a~g~~~~a~~l~~~l~n~~~~~~~v~kl~~~~~~~~~q~~~~~l~~l 226 (261)
T PRK05818 166 LLSFY-----SVDE----QLQAYNNGSFSKLKNIIETLINKKNKLIQIHKAWILFKTFSYYEIAQLLNLL 226 (261)
T ss_pred HHHcc-----CccH----HHHHHcCCCHHHHHHHHHHHHcccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44321 2333 677788999999999998652211 234555566666666655555554443
No 123
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.73 E-value=4e-16 Score=129.20 Aligned_cols=121 Identities=17% Similarity=0.238 Sum_probs=101.9
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecC------------CcccchhhhcceeEEEecCCChHHHHHHH
Q 021660 142 VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ------------VNKIIPALQSRCTRFRFAPLEPVHVTERL 209 (309)
Q Consensus 142 ~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~------------~~~l~~~l~~r~~~i~~~~~~~~~~~~~l 209 (309)
+.+|+|||+|.|.-++..+|.+.|+..- .+++|++||. +..++..|++|..++...|++.+++++++
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEse~-aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi 370 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALESEL-APIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREII 370 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhccc-CcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHHHH
Confidence 6799999999999999999999998643 5567777753 45678899999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHh-cCCHHHHHHHHHHHHh----h-cCCcCHHHHHhhhC
Q 021660 210 KHVIEAEGLDVTEGGLAALVRLC-NGDMRKALNILQSTHM----A-SQQITEEAVYLCTG 263 (309)
Q Consensus 210 ~~~~~~~~~~~~~~~l~~i~~~~-~g~~r~~~~~l~~~~~----~-~~~i~~~~v~~~~~ 263 (309)
+.+++.+++.++++++++++... .-++|.++++|.-+.. . ++.+..++|+.+..
T Consensus 371 ~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~ 430 (450)
T COG1224 371 RIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKE 430 (450)
T ss_pred HHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHH
Confidence 99999999999999999999986 4689999999963332 2 24688888877654
No 124
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=99.72 E-value=2.6e-15 Score=128.78 Aligned_cols=208 Identities=13% Similarity=0.161 Sum_probs=165.6
Q ss_pred HHHHHHHHccCcc-cccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH-HHHHHHHHHHHHh
Q 021660 91 ILAVARKLYGAQY-HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-DAQFALRRVIEKY 168 (309)
Q Consensus 91 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~-~~~~~l~~~l~~~ 168 (309)
+..+.+....+++ ...++.++..+. ....+ .....+.+. ++ ++++++|++++.+.. ...+.|.++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~~l----~~~~~~~sl-f~---~~kliii~~~~~~~~~~~~~~L~~~l~~~ 74 (302)
T TIGR01128 4 ADAIRAAALAQGFDEFNVFRIDGEEF-DWNQL----LEEAQTLPL-FS---ERRLVELRNPEGKPGAKGLKALEEYLANP 74 (302)
T ss_pred HHHHHHHHHhCCCchheeeeeccCCC-CHHHH----HHHhhccCc-cc---CCeEEEEECCCCCCCHHHHHHHHHHHhcC
Confidence 4455555543333 456666665542 22332 222222222 22 578999999998763 5578999999998
Q ss_pred cCCceEEEEecCCcc---cchhhh--cceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHH
Q 021660 169 TKNTRFALICNQVNK---IIPALQ--SRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNIL 243 (309)
Q Consensus 169 ~~~~~~i~~~~~~~~---l~~~l~--~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l 243 (309)
+++..+|++++..+. +.+.+. +++..+.|.+++..++..|+...+++.|+.+++++++.+++.++||++.+.+.+
T Consensus 75 ~~~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~~d~~~l~~el 154 (302)
T TIGR01128 75 PPDTLLLIEAPKLDKRKKLTKWLKALKNAQIVECKTPKEQELPRWIQARLKKLGLRIDPDAVQLLAELVEGNLLAIAQEL 154 (302)
T ss_pred CCCEEEEEecCCCCHhHHHHHHHHHhcCeeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCcHHHHHHHHH
Confidence 888888888764432 222333 389999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc--CCcCHHHHHhhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 244 QSTHMAS--QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 244 ~~~~~~~--~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
++++.+. +.||.++|...+.......++++++++..++...++..++.++ ..|.+|..|++.|.
T Consensus 155 ~KL~~~~~~~~It~e~I~~~~~~~~~~~if~l~dal~~~~~~~a~~~l~~l~-~~~~~~~~il~~l~ 220 (302)
T TIGR01128 155 EKLALYAPDGKITLEDVEEAVSDSARFNVFDLTDALLEGKAARALRILKGLL-GEGEEPLILLALLQ 220 (302)
T ss_pred HHHHhhCCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCHHHHHHHHHHHH-HCCCcHHHHHHHHH
Confidence 9999874 5799999999999999999999999999999999999999999 99999999998875
No 125
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=99.72 E-value=7.3e-15 Score=128.16 Aligned_cols=234 Identities=14% Similarity=0.190 Sum_probs=173.4
Q ss_pred HHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCc-ccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCcc
Q 021660 64 TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASV 142 (309)
Q Consensus 64 ~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (309)
.+...+..+-.+.++|+|+.-.=+...+..+.+.+..++ ....+..++.... ..+. +.....+.+. |+ ++
T Consensus 7 ~~~~~~~~~~~~~~li~G~d~~l~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~-~~~~----l~~~~~t~~l-F~---~~ 77 (340)
T PRK05574 7 QLEKQLKKGLAPLYLLYGDEPLLLQEAKDAIRAAARAQGFDERNVFTFDGSET-DWDD----VLEACQSLPL-FS---DR 77 (340)
T ss_pred HHHHHHhCCCCceEEEEcCcHHHHHHHHHHHHHHHHcCCCceeeEEEeecCCC-CHHH----HHHHhhccCc-cc---cC
Confidence 444555555344599999996666666666666543322 3445555555532 2222 2233333332 32 58
Q ss_pred EEEEEeCCCCCCHHH----HHHHHHHHHHhcCC--ceEEEEecCCc---cc---chhhhcceeEEEecCCChHHHHHHHH
Q 021660 143 KLVLLDEADAMTKDA----QFALRRVIEKYTKN--TRFALICNQVN---KI---IPALQSRCTRFRFAPLEPVHVTERLK 210 (309)
Q Consensus 143 ~lliiDe~~~l~~~~----~~~l~~~l~~~~~~--~~~i~~~~~~~---~l---~~~l~~r~~~i~~~~~~~~~~~~~l~ 210 (309)
++++|++++.+.... ...+..++ ++++. .++++.++..+ +. .+.+.+++..+.|.+++..++..|+.
T Consensus 78 klvii~~~~~l~~~~~~~~l~~l~~~l-~~~~~~~~~li~~~~~~~~~~k~~k~~k~~~~~~~~~~~~~~~~~~~~~~i~ 156 (340)
T PRK05574 78 KLVELRLPEFLTGAKGEKALKRLEAYL-NPLPHPDLLLIVRLPKLDKAKKKSAWFKALKKKAVVVEAQPPKEAELPQWIQ 156 (340)
T ss_pred eEEEEECCCCCCchhHHHHHHHHHHhc-cCCCCCcEEEEEECCcCCHHHHhhHHHHHHHhCceEEEcCCCCHHHHHHHHH
Confidence 899999999886542 23344444 33433 34444444332 22 56677788999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--CCcCHHHHHhhhCCCChHHHHHHHHHHhcCCHHHHHHH
Q 021660 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS--QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKR 288 (309)
Q Consensus 211 ~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~--~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (309)
..+++.|+.+++++++.+++.++||+..+.+.+++++.+. +.||.++|..++......+++++++++..++...++..
T Consensus 157 ~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~~~~~~It~~~I~~~i~~~~~~~~f~l~dai~~~~~~~a~~~ 236 (340)
T PRK05574 157 QRLKQQGLQIDAAALQLLAERVEGNLLALAQELEKLALLYPDGKITLEDVEEAVPDSARFDVFDLVDAILAGKIKRALRI 236 (340)
T ss_pred HHHHHcCCCCCHHHHHHHHHHhCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999765 34999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHhh
Q 021660 289 ISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 289 l~~~~~~~g~~~~~~~~~l~ 308 (309)
+..++ ..|.+|..|++.|.
T Consensus 237 l~~l~-~~~~~~~~il~~l~ 255 (340)
T PRK05574 237 LDGLR-LEGEEPIKLLAALQ 255 (340)
T ss_pred HHHHH-HCCCcHHHHHHHHH
Confidence 99999 88999999998875
No 126
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.72 E-value=3.3e-16 Score=131.64 Aligned_cols=105 Identities=19% Similarity=0.279 Sum_probs=80.7
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecC------------CcccchhhhcceeEEEecCCChHHHHHHH
Q 021660 142 VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ------------VNKIIPALQSRCTRFRFAPLEPVHVTERL 209 (309)
Q Consensus 142 ~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~------------~~~l~~~l~~r~~~i~~~~~~~~~~~~~l 209 (309)
++||+|||+|.|.-++..+|.++++..- .+.+|++||. +..++..|++|+.++...|++.+|+++++
T Consensus 279 pGVLFIDEvHmLDiEcFsfLnralEs~~-sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~Il 357 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIECFSFLNRALESEL-SPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQIL 357 (398)
T ss_dssp E-EEEEESGGGSBHHHHHHHHHHHTSTT---EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHHHH
T ss_pred cceEEecchhhccHHHHHHHHHHhcCCC-CcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHHHH
Confidence 6799999999999999999999998543 6678888863 33567899999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHh-cCCHHHHHHHHHHHH
Q 021660 210 KHVIEAEGLDVTEGGLAALVRLC-NGDMRKALNILQSTH 247 (309)
Q Consensus 210 ~~~~~~~~~~~~~~~l~~i~~~~-~g~~r~~~~~l~~~~ 247 (309)
+.+++.+++.+++++++.+.+.. ...+|.+++++..+.
T Consensus 358 ~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a~ 396 (398)
T PF06068_consen 358 KIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPAS 396 (398)
T ss_dssp HHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHHH
T ss_pred HhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhhh
Confidence 99999999999999999999876 578999999887654
No 127
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.71 E-value=1e-15 Score=134.16 Aligned_cols=205 Identities=20% Similarity=0.245 Sum_probs=132.3
Q ss_pred CCCCccccccChHHHHHHHHHHhcC-------------CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCC
Q 021660 48 RPQSLADVAAHRDIVDTIDRLTSEN-------------RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (309)
Q Consensus 48 ~p~~~~~~ig~~~~~~~l~~~~~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 114 (309)
....++++.|.+..++.+..++... .+.+++|+||||||||++++++++.+ ...++.+....
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l-----~~~~~~v~~~~ 191 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET-----NATFIRVVGSE 191 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC-----CCCEEecchHH
Confidence 3447889999999999998876421 23449999999999999999999997 34445444322
Q ss_pred Ccc--hHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCC-----------HHHHHHHHHHHHHh-----cCCceEEE
Q 021660 115 DRG--IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT-----------KDAQFALRRVIEKY-----TKNTRFAL 176 (309)
Q Consensus 115 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~-----------~~~~~~l~~~l~~~-----~~~~~~i~ 176 (309)
... .......+....... ....+.+|+|||+|.+. ...+..+..++... ..+..+|+
T Consensus 192 l~~~~~g~~~~~i~~~f~~a-----~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ 266 (364)
T TIGR01242 192 LVRKYIGEGARLVREIFELA-----KEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIA 266 (364)
T ss_pred HHHHhhhHHHHHHHHHHHHH-----HhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEE
Confidence 100 011111122221110 11146799999999874 22344555665443 23667888
Q ss_pred EecCCcccchhhhc--ce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCH-HHHHHHHHHHHhhc--
Q 021660 177 ICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDM-RKALNILQSTHMAS-- 250 (309)
Q Consensus 177 ~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~-r~~~~~l~~~~~~~-- 250 (309)
+||..+.+++++.+ || ..+.|+.|+.++..++++.++...... ++..+..+++.+.|-. +.+..++..+...+
T Consensus 267 ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~ 345 (364)
T TIGR01242 267 ATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDLEAIAKMTEGASGADLKAICTEAGMFAIR 345 (364)
T ss_pred ecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 89999999999876 66 679999999999999998877554332 1235778888887643 34444444443322
Q ss_pred ---CCcCHHHHHhhhC
Q 021660 251 ---QQITEEAVYLCTG 263 (309)
Q Consensus 251 ---~~i~~~~v~~~~~ 263 (309)
..|+.+++..++.
T Consensus 346 ~~~~~i~~~d~~~a~~ 361 (364)
T TIGR01242 346 EERDYVTMDDFIKAVE 361 (364)
T ss_pred hCCCccCHHHHHHHHH
Confidence 4577777776654
No 128
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.71 E-value=3.2e-15 Score=124.85 Aligned_cols=193 Identities=20% Similarity=0.181 Sum_probs=128.9
Q ss_pred hHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHH---------HHHHhh
Q 021660 59 RDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQ---------QIQDFA 129 (309)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 129 (309)
..+++.+..++..+ .+++|+||||||||++|+.+++.+ +..+..+++........+.. ....+.
T Consensus 8 ~~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l-----g~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~ 80 (262)
T TIGR02640 8 KRVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR-----DRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFI 80 (262)
T ss_pred HHHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh-----CCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHH
Confidence 34555666666665 359999999999999999999976 55666666654332222111 001110
Q ss_pred h----c---------cccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHh----------------cCCceEEEEecC
Q 021660 130 S----T---------QSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY----------------TKNTRFALICNQ 180 (309)
Q Consensus 130 ~----~---------~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~----------------~~~~~~i~~~~~ 180 (309)
. . ...-.....++.+|+|||++.+.++.++.|+.++++. ++..++|+++|.
T Consensus 81 ~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~ 160 (262)
T TIGR02640 81 HNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNP 160 (262)
T ss_pred HHhhhhhcccceeecCchHHHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCC
Confidence 0 0 0000000124569999999999999999999999752 135568888886
Q ss_pred C-----cccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc----------CCHHHHHHHHHH
Q 021660 181 V-----NKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCN----------GDMRKALNILQS 245 (309)
Q Consensus 181 ~-----~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~----------g~~r~~~~~l~~ 245 (309)
. ..+.+++.+||..+.+..|+.++..+++..++ .++++.++.+++... -.+|.++...+.
T Consensus 161 ~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~-----~~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~~ 235 (262)
T TIGR02640 161 VEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAKT-----DVAEDSAATIVRLVREFRASGDEITSGLRASLMIAEV 235 (262)
T ss_pred ccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHHH
Confidence 4 24578899999999999999999999988764 467777777776541 137888887777
Q ss_pred HHhhc--CCcCHHHHHhhhC
Q 021660 246 THMAS--QQITEEAVYLCTG 263 (309)
Q Consensus 246 ~~~~~--~~i~~~~v~~~~~ 263 (309)
+...+ ..++.+++.+.+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~ 255 (262)
T TIGR02640 236 ATQQDIPVDVDDEDFVDLCI 255 (262)
T ss_pred HHHcCCCCCCCcHHHHHHHH
Confidence 76654 3566666666553
No 129
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.70 E-value=2.7e-16 Score=149.76 Aligned_cols=183 Identities=22% Similarity=0.278 Sum_probs=124.8
Q ss_pred cccccChHHHHHHHHHHhcC------CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHH----
Q 021660 53 ADVAAHRDIVDTIDRLTSEN------RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVR---- 122 (309)
Q Consensus 53 ~~~ig~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 122 (309)
.+++|++.+++.+..++... +.++++|+||||||||++++.+++.+ ...+..++.........+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l-----~~~~~~i~~~~~~~~~~i~g~~~ 394 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL-----NRKFVRFSLGGVRDEAEIRGHRR 394 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh-----cCCeEEEeCCCcccHHHHcCCCC
Confidence 35889999999988876421 33569999999999999999999998 4455555443221111110
Q ss_pred -------HHHHHhhhccccccCCCCccEEEEEeCCCCCCHHH----HHHHHHHHHHh---------------cCCceEEE
Q 021660 123 -------QQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDA----QFALRRVIEKY---------------TKNTRFAL 176 (309)
Q Consensus 123 -------~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~----~~~l~~~l~~~---------------~~~~~~i~ 176 (309)
..+.+...... ....+|+|||+|.+.+.. .+.|+++++.. ..++.||+
T Consensus 395 ~~~g~~~g~i~~~l~~~~------~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~ 468 (775)
T TIGR00763 395 TYVGAMPGRIIQGLKKAK------TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIA 468 (775)
T ss_pred ceeCCCCchHHHHHHHhC------cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEE
Confidence 01111111100 133499999999997532 36788877631 03567788
Q ss_pred EecCCcccchhhhcceeEEEecCCChHHHHHHHHHHH-----HHc-----CCCCCHHHHHHHHHHhc--CCHHHHHHHHH
Q 021660 177 ICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVI-----EAE-----GLDVTEGGLAALVRLCN--GDMRKALNILQ 244 (309)
Q Consensus 177 ~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~-----~~~-----~~~~~~~~l~~i~~~~~--g~~r~~~~~l~ 244 (309)
|+|....+++++++|+.++.|++++.++..+++++++ +.. ++.++++++..|++.+. ...|.+...++
T Consensus 469 TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~ 548 (775)
T TIGR00763 469 TANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIE 548 (775)
T ss_pred ecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHH
Confidence 8899999999999999999999999999999887765 222 35789999999998653 23455444443
Q ss_pred HH
Q 021660 245 ST 246 (309)
Q Consensus 245 ~~ 246 (309)
..
T Consensus 549 ~~ 550 (775)
T TIGR00763 549 KI 550 (775)
T ss_pred HH
Confidence 33
No 130
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.70 E-value=1.4e-15 Score=135.96 Aligned_cols=171 Identities=20% Similarity=0.258 Sum_probs=113.4
Q ss_pred hhhcCCCCccccccChHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHccCc-----ccc
Q 021660 44 VEKYRPQSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-----YHN 105 (309)
Q Consensus 44 ~~~~~p~~~~~~ig~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-----~~~ 105 (309)
.+.+.+.+++++.|.+..++.++..+.. ..+.+++||||||||||++++++++++.... ...
T Consensus 173 ~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~ 252 (512)
T TIGR03689 173 LEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKS 252 (512)
T ss_pred eecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCce
Confidence 3555667899999999999988887641 1233499999999999999999999984331 112
Q ss_pred cEEEEecCCC------cchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHH------------HHHHHHHHHHH
Q 021660 106 MILELNASDD------RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD------------AQFALRRVIEK 167 (309)
Q Consensus 106 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~------------~~~~l~~~l~~ 167 (309)
.++.+..... .....++..+...... .....+.+|+|||+|.+... ..+.|+..|+.
T Consensus 253 ~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~-----a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDg 327 (512)
T TIGR03689 253 YFLNIKGPELLNKYVGETERQIRLIFQRAREK-----ASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDG 327 (512)
T ss_pred eEEeccchhhcccccchHHHHHHHHHHHHHHH-----hhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcc
Confidence 2333222211 1111122222221111 01114789999999988531 12456666664
Q ss_pred hc--CCceEEEEecCCcccchhhhc--ce-eEEEecCCChHHHHHHHHHHHHHcCCCC
Q 021660 168 YT--KNTRFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDV 220 (309)
Q Consensus 168 ~~--~~~~~i~~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~ 220 (309)
.. .+..+|.+||..+.+++++.+ || ..|+|++|+.++..++++.++.. .+.+
T Consensus 328 l~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~-~l~l 384 (512)
T TIGR03689 328 VESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD-SLPL 384 (512)
T ss_pred cccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc-cCCc
Confidence 43 356778888999999999988 77 67999999999999999998754 3344
No 131
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.1e-15 Score=129.23 Aligned_cols=198 Identities=18% Similarity=0.213 Sum_probs=132.6
Q ss_pred CCCCccccccChHHHHHHHHHHh----cC-------C-C-CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCC
Q 021660 48 RPQSLADVAAHRDIVDTIDRLTS----EN-------R-L-PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (309)
Q Consensus 48 ~p~~~~~~ig~~~~~~~l~~~~~----~~-------~-~-~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 114 (309)
.|.+|+-++-.+..++.+.+-+. +. + . ..+|||||||||||+++.++|+.+ ...+..+.-+.
T Consensus 196 HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L-----~ydIydLeLt~ 270 (457)
T KOG0743|consen 196 HPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYL-----NYDIYDLELTE 270 (457)
T ss_pred CCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhc-----CCceEEeeecc
Confidence 45778888888777776655443 21 1 1 129999999999999999999999 45555544443
Q ss_pred CcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH------------------HHHHHHHHHHHHhcCCc----
Q 021660 115 DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK------------------DAQFALRRVIEKYTKNT---- 172 (309)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~------------------~~~~~l~~~l~~~~~~~---- 172 (309)
...-.+++..+.... +++||+|+|||+-.. -....|++.++.....+
T Consensus 271 v~~n~dLr~LL~~t~-----------~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ER 339 (457)
T KOG0743|consen 271 VKLDSDLRHLLLATP-----------NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDER 339 (457)
T ss_pred ccCcHHHHHHHHhCC-----------CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCce
Confidence 333344555544432 589999999998631 11346888888776544
Q ss_pred eEEEEecCCcccchhhhcc--e-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 021660 173 RFALICNQVNKIIPALQSR--C-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA 249 (309)
Q Consensus 173 ~~i~~~~~~~~l~~~l~~r--~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~ 249 (309)
++|+|||..++++|+|.++ + ..|++...+....+.++.+++ ++.-+......|.+...
T Consensus 340 IivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL---~~~~~h~L~~eie~l~~---------------- 400 (457)
T KOG0743|consen 340 IIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYL---GIEEDHRLFDEIERLIE---------------- 400 (457)
T ss_pred EEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhc---CCCCCcchhHHHHHHhh----------------
Confidence 6888999999999999995 4 669999999999999998876 33223444444444222
Q ss_pred cCCcCHHHHHhhhCCC---ChHHHHHHHHHHhcC
Q 021660 250 SQQITEEAVYLCTGNP---LPKDIEQISYWLLNE 280 (309)
Q Consensus 250 ~~~i~~~~v~~~~~~~---~~~~~~~~~~~~~~~ 280 (309)
...+|+++|.+.+-.. .+..+..+++.+...
T Consensus 401 ~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~~ 434 (457)
T KOG0743|consen 401 ETEVTPAQVAEELMKNKNDADVALKGLVEALESK 434 (457)
T ss_pred cCccCHHHHHHHHhhccccHHHHHHHHHHHHHhh
Confidence 2457777777655332 333455555554433
No 132
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.69 E-value=4.5e-15 Score=141.16 Aligned_cols=184 Identities=18% Similarity=0.241 Sum_probs=127.1
Q ss_pred CCCccccccChHHHHHHHHHHhc------------C-CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCC
Q 021660 49 PQSLADVAAHRDIVDTIDRLTSE------------N-RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115 (309)
Q Consensus 49 p~~~~~~ig~~~~~~~l~~~~~~------------~-~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 115 (309)
...|+++.|.+.+++.+.+.+.. . .+..++|+||||||||++++++++++ +..++.+.+...
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~-----~~~fi~v~~~~l 523 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES-----GANFIAVRGPEI 523 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc-----CCCEEEEehHHH
Confidence 34789999999999988887641 1 22349999999999999999999997 566676665431
Q ss_pred ------cchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH------------HHHHHHHHHHHHh--cCCceEE
Q 021660 116 ------RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK------------DAQFALRRVIEKY--TKNTRFA 175 (309)
Q Consensus 116 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~------------~~~~~l~~~l~~~--~~~~~~i 175 (309)
.....++..+..... ..+++|+|||+|.+.+ ...+.|+..++.. ..+..+|
T Consensus 524 ~~~~vGese~~i~~~f~~A~~---------~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI 594 (733)
T TIGR01243 524 LSKWVGESEKAIREIFRKARQ---------AAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVI 594 (733)
T ss_pred hhcccCcHHHHHHHHHHHHHh---------cCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEE
Confidence 111223333332221 1578999999998742 1235566666642 3456777
Q ss_pred EEecCCcccchhhhc--ce-eEEEecCCChHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCCHHH-HHHHHHHHHh
Q 021660 176 LICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVT-EGGLAALVRLCNGDMRK-ALNILQSTHM 248 (309)
Q Consensus 176 ~~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~l~~i~~~~~g~~r~-~~~~l~~~~~ 248 (309)
++||.++.+++++.+ || ..+++++|+.++..++++...+. ..++ +..+..+++.+.|.... +.++++.++.
T Consensus 595 ~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~--~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~ 670 (733)
T TIGR01243 595 AATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS--MPLAEDVDLEELAEMTEGYTGADIEAVCREAAM 670 (733)
T ss_pred EeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC--CCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 888999999999986 88 78999999999999999876553 3443 34578899988775443 3334444443
No 133
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.1e-15 Score=137.87 Aligned_cols=201 Identities=21% Similarity=0.272 Sum_probs=142.9
Q ss_pred CCCccccccChHHHHHHHHHHh-----------cCCCCe-EEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCC-
Q 021660 49 PQSLADVAAHRDIVDTIDRLTS-----------ENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD- 115 (309)
Q Consensus 49 p~~~~~~ig~~~~~~~l~~~~~-----------~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~- 115 (309)
+..|.|+.|.++++..|.+.+. +.+.|. ++|+||||||||.||+++|.+. ++.|+.++.+.-
T Consensus 307 ~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-----gVPF~svSGSEFv 381 (774)
T KOG0731|consen 307 GVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSVSGSEFV 381 (774)
T ss_pred CCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-----CCceeeechHHHH
Confidence 3579999999999998888765 123343 9999999999999999999997 778887776641
Q ss_pred -----cchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHH---------------HHHHHHHHHHHh--cCCce
Q 021660 116 -----RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD---------------AQFALRRVIEKY--TKNTR 173 (309)
Q Consensus 116 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~---------------~~~~l~~~l~~~--~~~~~ 173 (309)
.+...++..+.... ...+++++|||+|.+... ..+.|+--|+.. ...++
T Consensus 382 E~~~g~~asrvr~lf~~ar---------~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi 452 (774)
T KOG0731|consen 382 EMFVGVGASRVRDLFPLAR---------KNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVI 452 (774)
T ss_pred HHhcccchHHHHHHHHHhh---------ccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEE
Confidence 22233333322221 125789999999977522 234444445432 23456
Q ss_pred EEEEecCCcccchhhhc--ce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHH-HHHHhh
Q 021660 174 FALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNIL-QSTHMA 249 (309)
Q Consensus 174 ~i~~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l-~~~~~~ 249 (309)
++.+||.++.+++++.+ || ..+.+..|+.....+|++-+++......++..+..++.++.|..+.-+..+ ..++..
T Consensus 453 ~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~ 532 (774)
T KOG0731|consen 453 VLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALL 532 (774)
T ss_pred EEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHH
Confidence 67778999999999987 56 779999999999999999998877776677777789999999877665544 444332
Q ss_pred c-----CCcCHHHHHhhhC
Q 021660 250 S-----QQITEEAVYLCTG 263 (309)
Q Consensus 250 ~-----~~i~~~~v~~~~~ 263 (309)
+ ..|+..++..++.
T Consensus 533 a~r~~~~~i~~~~~~~a~~ 551 (774)
T KOG0731|consen 533 AARKGLREIGTKDLEYAIE 551 (774)
T ss_pred HHHhccCccchhhHHHHHH
Confidence 2 4566666655554
No 134
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.69 E-value=7.7e-16 Score=129.77 Aligned_cols=147 Identities=16% Similarity=0.207 Sum_probs=107.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCC------cchHHHHHHHHHhhhccccccCCCCccEEEEEeCC
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD------RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEA 150 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~ 150 (309)
++||||||||||.+++++++++ +..++.++.... .+...+++.+....... ..+..+++|+|||+
T Consensus 151 llL~GPPGcGKTllAraiA~el-----g~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a----~~~~aPcVLFIDEI 221 (413)
T PLN00020 151 LGIWGGKGQGKSFQCELVFKKM-----GIEPIVMSAGELESENAGEPGKLIRQRYREAADII----KKKGKMSCLFINDL 221 (413)
T ss_pred EEeeCCCCCCHHHHHHHHHHHc-----CCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHh----hccCCCeEEEEehh
Confidence 9999999999999999999998 677777776542 22334454444443221 01225899999999
Q ss_pred CCCCHHH------------HHHHHHHHHHh--------------cCCceEEEEecCCcccchhhhc--ceeEEEecCCCh
Q 021660 151 DAMTKDA------------QFALRRVIEKY--------------TKNTRFALICNQVNKIIPALQS--RCTRFRFAPLEP 202 (309)
Q Consensus 151 ~~l~~~~------------~~~l~~~l~~~--------------~~~~~~i~~~~~~~~l~~~l~~--r~~~i~~~~~~~ 202 (309)
|.+.+.. ...|+.+++.+ ...+.||++||+++.++++|++ |+..+ +..|+.
T Consensus 222 DA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~-i~lPd~ 300 (413)
T PLN00020 222 DAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKF-YWAPTR 300 (413)
T ss_pred hhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCce-eCCCCH
Confidence 9876321 14566666532 3456788889999999999998 77443 457999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC
Q 021660 203 VHVTERLKHVIEAEGLDVTEGGLAALVRLCNGD 235 (309)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~ 235 (309)
++..+|++.+++.. .++...+..|++..+|.
T Consensus 301 e~R~eIL~~~~r~~--~l~~~dv~~Lv~~f~gq 331 (413)
T PLN00020 301 EDRIGVVHGIFRDD--GVSREDVVKLVDTFPGQ 331 (413)
T ss_pred HHHHHHHHHHhccC--CCCHHHHHHHHHcCCCC
Confidence 99999999988876 45688899999999875
No 135
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.68 E-value=8e-16 Score=147.80 Aligned_cols=201 Identities=15% Similarity=0.193 Sum_probs=142.5
Q ss_pred ChhhhcCCCCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCc-----ccccEEEEecCCC-
Q 021660 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-----YHNMILELNASDD- 115 (309)
Q Consensus 42 ~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-----~~~~~~~~~~~~~- 115 (309)
++++..+|..+++++|+++.+..+...+.+....+++|+||||+|||++++.++..+.... .+..++.++....
T Consensus 162 ~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~ 241 (852)
T TIGR03346 162 DLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALI 241 (852)
T ss_pred hHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHh
Confidence 4677889999999999999999999999888878899999999999999999999874321 1233444432211
Q ss_pred ---cchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH--------HHHHHHHHHHHHhcCCceEEEEecCC---
Q 021660 116 ---RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK--------DAQFALRRVIEKYTKNTRFALICNQV--- 181 (309)
Q Consensus 116 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~--------~~~~~l~~~l~~~~~~~~~i~~~~~~--- 181 (309)
.....+...+......... ...+.||+|||+|.+.. +..+.|...+. .....+|.+|+..
T Consensus 242 a~~~~~g~~e~~l~~~l~~~~~----~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~--~g~i~~IgaTt~~e~r 315 (852)
T TIGR03346 242 AGAKYRGEFEERLKAVLNEVTK----SEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA--RGELHCIGATTLDEYR 315 (852)
T ss_pred hcchhhhhHHHHHHHHHHHHHh----cCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh--cCceEEEEeCcHHHHH
Confidence 1111222233333221110 01468999999998862 23344555443 2345666666544
Q ss_pred --cccchhhhcceeEEEecCCChHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhcC------CHHHHHHHHHHHHh
Q 021660 182 --NKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA----EGLDVTEGGLAALVRLCNG------DMRKALNILQSTHM 248 (309)
Q Consensus 182 --~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~l~~i~~~~~g------~~r~~~~~l~~~~~ 248 (309)
...++++.+||+.+.+..|+.++...+++....+ .++.++++++..++..+.+ -|.+++++|+.++.
T Consensus 316 ~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a 394 (852)
T TIGR03346 316 KYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAA 394 (852)
T ss_pred HHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHH
Confidence 2468899999999999999999999998876554 3677899999999988753 49999999988775
No 136
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.4e-15 Score=132.01 Aligned_cols=195 Identities=19% Similarity=0.221 Sum_probs=129.8
Q ss_pred CCCccccccChHHHHHHHHHHh-----------cCCCCe-EEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCC--
Q 021660 49 PQSLADVAAHRDIVDTIDRLTS-----------ENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD-- 114 (309)
Q Consensus 49 p~~~~~~ig~~~~~~~l~~~~~-----------~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~-- 114 (309)
...|+|+-|-+++++.+.+.+. +++.|. +||+||||||||.||+++|.+. ++.|+....+.
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA-----~VPFF~~sGSEFd 374 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA-----GVPFFYASGSEFD 374 (752)
T ss_pred ccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc-----CCCeEeccccchh
Confidence 4469999999999988887764 334444 9999999999999999999997 56665555443
Q ss_pred ----CcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH-----------HHHHHHHHHHHHhc--CCceEEEE
Q 021660 115 ----DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKYT--KNTRFALI 177 (309)
Q Consensus 115 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~-----------~~~~~l~~~l~~~~--~~~~~i~~ 177 (309)
..+...++..+...... .++||+|||+|.+.. ...+.|+--|+... ...+||.+
T Consensus 375 Em~VGvGArRVRdLF~aAk~~---------APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigA 445 (752)
T KOG0734|consen 375 EMFVGVGARRVRDLFAAAKAR---------APCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGA 445 (752)
T ss_pred hhhhcccHHHHHHHHHHHHhc---------CCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEec
Confidence 12344555544443222 578999999998752 22345555555433 34455667
Q ss_pred ecCCcccchhhhc--ce-eEEEecCCChHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCCHHH-HHHHHHHHHhhc--
Q 021660 178 CNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVT-EGGLAALVRLCNGDMRK-ALNILQSTHMAS-- 250 (309)
Q Consensus 178 ~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~l~~i~~~~~g~~r~-~~~~l~~~~~~~-- 250 (309)
||.++.++++|.+ || ..+.++.|+..-..+||+.++.+. ..+ +-....|++-+.|.-+. +.|++..++..+
T Consensus 446 TNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki--~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~ 523 (752)
T KOG0734|consen 446 TNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKI--PLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAV 523 (752)
T ss_pred cCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcC--CcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHh
Confidence 7999999999987 56 778999999999999999888743 333 23345567766654333 233333343322
Q ss_pred ---CCcCHHHHH
Q 021660 251 ---QQITEEAVY 259 (309)
Q Consensus 251 ---~~i~~~~v~ 259 (309)
..++..+++
T Consensus 524 dga~~VtM~~LE 535 (752)
T KOG0734|consen 524 DGAEMVTMKHLE 535 (752)
T ss_pred cCcccccHHHHh
Confidence 445555554
No 137
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.67 E-value=9.4e-16 Score=146.80 Aligned_cols=203 Identities=14% Similarity=0.176 Sum_probs=143.3
Q ss_pred cChhhhcCCCCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCc-----ccccEEEEecCCC
Q 021660 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-----YHNMILELNASDD 115 (309)
Q Consensus 41 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-----~~~~~~~~~~~~~ 115 (309)
.+++++.+|..+++++|+++.+..+...+.....++++|+||||||||++++.++..+.... .+..++.++....
T Consensus 166 ~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l 245 (857)
T PRK10865 166 IDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL 245 (857)
T ss_pred hhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhh
Confidence 34667788999999999999999999999888888899999999999999999999984321 1334444433321
Q ss_pred c----chHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHH--------HHHHHHHHHHHhcCCceEEEEecCCc-
Q 021660 116 R----GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD--------AQFALRRVIEKYTKNTRFALICNQVN- 182 (309)
Q Consensus 116 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~--------~~~~l~~~l~~~~~~~~~i~~~~~~~- 182 (309)
. ....+...+......... ..++.||+|||+|.+... ..+.|...+.+ ....+|.+|+..+
T Consensus 246 ~ag~~~~g~~e~~lk~~~~~~~~----~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~--g~l~~IgaTt~~e~ 319 (857)
T PRK10865 246 VAGAKYRGEFEERLKGVLNDLAK----QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTLDEY 319 (857)
T ss_pred hhccchhhhhHHHHHHHHHHHHH----cCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc--CCCeEEEcCCCHHH
Confidence 1 112222333333221100 014679999999998632 35666666642 3556777766543
Q ss_pred ----ccchhhhcceeEEEecCCChHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhc------CCHHHHHHHHHHHHh
Q 021660 183 ----KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA----EGLDVTEGGLAALVRLCN------GDMRKALNILQSTHM 248 (309)
Q Consensus 183 ----~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~l~~i~~~~~------g~~r~~~~~l~~~~~ 248 (309)
..++++.+||+.+.+..|+.++...+++....+ .++.++++++...+..+. ..|..++.++..++.
T Consensus 320 r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa 399 (857)
T PRK10865 320 RQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAAS 399 (857)
T ss_pred HHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHHHHHHHHHhc
Confidence 468899999988999999999999998776654 356788988888776663 468888888877765
Q ss_pred h
Q 021660 249 A 249 (309)
Q Consensus 249 ~ 249 (309)
.
T Consensus 400 ~ 400 (857)
T PRK10865 400 S 400 (857)
T ss_pred c
Confidence 4
No 138
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.67 E-value=2.3e-14 Score=120.85 Aligned_cols=202 Identities=18% Similarity=0.209 Sum_probs=125.3
Q ss_pred hHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhcccc----
Q 021660 59 RDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSF---- 134 (309)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 134 (309)
..++..+...+..+ .+.++|+||+|+||||+++.+++.+.... ..+..+..... ....+...+.........
T Consensus 29 ~~~~~~l~~~~~~~-~~~~~l~G~~G~GKTtl~~~l~~~l~~~~--~~~~~~~~~~~-~~~~~l~~i~~~lG~~~~~~~~ 104 (269)
T TIGR03015 29 KRAMAYLEYGLSQR-EGFILITGEVGAGKTTLIRNLLKRLDQER--VVAAKLVNTRV-DAEDLLRMVAADFGLETEGRDK 104 (269)
T ss_pred HHHHHHHHHHHhcC-CCEEEEEcCCCCCHHHHHHHHHHhcCCCC--eEEeeeeCCCC-CHHHHHHHHHHHcCCCCCCCCH
Confidence 34444444444432 34599999999999999999999875322 11111111111 111111111111100000
Q ss_pred ------------ccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc---CCceEEEEecCC------cccchhhhcce-
Q 021660 135 ------------SFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT---KNTRFALICNQV------NKIIPALQSRC- 192 (309)
Q Consensus 135 ------------~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~---~~~~~i~~~~~~------~~l~~~l~~r~- 192 (309)
.......+.+|+|||++.+.....+.+..+.+... ....+++++... ......+.+|+
T Consensus 105 ~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~ 184 (269)
T TIGR03015 105 AALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRII 184 (269)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhhee
Confidence 00011246799999999999877776655444221 122344444321 11123566775
Q ss_pred eEEEecCCChHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-----CCcCHHHHHhhhC
Q 021660 193 TRFRFAPLEPVHVTERLKHVIEAEG----LDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-----QQITEEAVYLCTG 263 (309)
Q Consensus 193 ~~i~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~-----~~i~~~~v~~~~~ 263 (309)
..+++++++.+++.+++..++...+ ..+++++++.|++.++|+||.+...+..+...+ +.|+.++|..++.
T Consensus 185 ~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~ 264 (269)
T TIGR03015 185 ASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLEEKREIGGEEVREVIA 264 (269)
T ss_pred eeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 7889999999999999999998765 368999999999999999999888877765432 6788888887765
Q ss_pred C
Q 021660 264 N 264 (309)
Q Consensus 264 ~ 264 (309)
.
T Consensus 265 ~ 265 (269)
T TIGR03015 265 E 265 (269)
T ss_pred H
Confidence 4
No 139
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.66 E-value=7.1e-15 Score=137.94 Aligned_cols=209 Identities=12% Similarity=0.152 Sum_probs=141.0
Q ss_pred cCCCCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcc-----cccEEEEecCCC----cc
Q 021660 47 YRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY-----HNMILELNASDD----RG 117 (309)
Q Consensus 47 ~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~-----~~~~~~~~~~~~----~~ 117 (309)
-+...++.++|++..+..+...+......+++|+||||||||++|+.++..+..... +..+..++.... ..
T Consensus 180 a~~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~ 259 (758)
T PRK11034 180 ARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKY 259 (758)
T ss_pred HHcCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccch
Confidence 356678899999999999999998887788999999999999999999988633321 112222221110 01
Q ss_pred hHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH---------HHHHHHHHHHHHhcCCceEEEEecCCc-----c
Q 021660 118 IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK---------DAQFALRRVIEKYTKNTRFALICNQVN-----K 183 (309)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~---------~~~~~l~~~l~~~~~~~~~i~~~~~~~-----~ 183 (309)
...+...+........ ..++.+|+|||+|.+.. +..+.|..++.. ....+|.+|+..+ .
T Consensus 260 ~Ge~e~rl~~l~~~l~-----~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~--g~i~vIgATt~~E~~~~~~ 332 (758)
T PRK11034 260 RGDFEKRFKALLKQLE-----QDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTYQEFSNIFE 332 (758)
T ss_pred hhhHHHHHHHHHHHHH-----hcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC--CCeEEEecCChHHHHHHhh
Confidence 1122233333222110 01467999999998731 122334444432 3455666665432 4
Q ss_pred cchhhhcceeEEEecCCChHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHhc------CCHHHHHHHHHHHHhhc---
Q 021660 184 IIPALQSRCTRFRFAPLEPVHVTERLKHVIE----AEGLDVTEGGLAALVRLCN------GDMRKALNILQSTHMAS--- 250 (309)
Q Consensus 184 l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~l~~i~~~~~------g~~r~~~~~l~~~~~~~--- 250 (309)
.++++.+||+.+.+++|+.++...+|+.... .+++.++++++..+++.+. .-|..++.+|+.++...
T Consensus 333 ~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~~ 412 (758)
T PRK11034 333 KDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLM 412 (758)
T ss_pred ccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhhccC
Confidence 6889999999999999999999999987554 3578899999999888764 36889999998887422
Q ss_pred ------CCcCHHHHHhhh
Q 021660 251 ------QQITEEAVYLCT 262 (309)
Q Consensus 251 ------~~i~~~~v~~~~ 262 (309)
..++.++|.+.+
T Consensus 413 ~~~~~~~~v~~~~i~~v~ 430 (758)
T PRK11034 413 PVSKRKKTVNVADIESVV 430 (758)
T ss_pred cccccccccChhhHHHHH
Confidence 236666666555
No 140
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.1e-14 Score=128.42 Aligned_cols=172 Identities=16% Similarity=0.186 Sum_probs=123.0
Q ss_pred CccccccChHHHHHHHHHHhcC-------------CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcc
Q 021660 51 SLADVAAHRDIVDTIDRLTSEN-------------RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG 117 (309)
Q Consensus 51 ~~~~~ig~~~~~~~l~~~~~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 117 (309)
+|+++-+.+++..+|..++-.. .+..+|+|||||||||.+|+++|++. +.+|+.+......+
T Consensus 509 tW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa-----g~NFisVKGPELlN 583 (802)
T KOG0733|consen 509 TWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA-----GANFISVKGPELLN 583 (802)
T ss_pred ChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc-----cCceEeecCHHHHH
Confidence 7888888888888887776421 23349999999999999999999997 88888887764321
Q ss_pred --hHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH-----------HHHHHHHHHHHHhc--CCceEEEEecCCc
Q 021660 118 --IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKYT--KNTRFALICNQVN 182 (309)
Q Consensus 118 --~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~-----------~~~~~l~~~l~~~~--~~~~~i~~~~~~~ 182 (309)
+.+-...+++.+..... ..++||++||+|.|.+ ...+.|+.-|+... ..+.+|.+||.++
T Consensus 584 kYVGESErAVR~vFqRAR~-----saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPD 658 (802)
T KOG0733|consen 584 KYVGESERAVRQVFQRARA-----SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPD 658 (802)
T ss_pred HHhhhHHHHHHHHHHHhhc-----CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCc
Confidence 11222223333222111 1589999999999863 23577777777553 3455677889999
Q ss_pred ccchhhhcc--e-eEEEecCCChHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHh
Q 021660 183 KIIPALQSR--C-TRFRFAPLEPVHVTERLKHVIEAEGLDVTE-GGLAALVRLC 232 (309)
Q Consensus 183 ~l~~~l~~r--~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~l~~i~~~~ 232 (309)
.+++++++. + ..+.+..|+.++...||+...+..+..+++ -.++.|++..
T Consensus 659 iIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~ 712 (802)
T KOG0733|consen 659 IIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNT 712 (802)
T ss_pred ccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcc
Confidence 999999884 5 668888899999999999988865555543 3467777654
No 141
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=3.6e-15 Score=134.05 Aligned_cols=209 Identities=21% Similarity=0.266 Sum_probs=144.3
Q ss_pred ccccccChHHHHHHHHHHh------cCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHH
Q 021660 52 LADVAAHRDIVDTIDRLTS------ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQI 125 (309)
Q Consensus 52 ~~~~ig~~~~~~~l~~~~~------~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (309)
-.+-.|-+.+++++.++++ ..+.+.++|+||||+|||++++.+|+.+ +-.|+.++-...+...+++..-
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al-----~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL-----GRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh-----CCCEEEEecCccccHHHhcccc
Confidence 3567888899998888875 2344569999999999999999999999 6677777665444434443332
Q ss_pred HHhhhcccccc-----CCCCccEEEEEeCCCCCCHHH----HHHHHHHHHHhc---------------CCceEEEEecCC
Q 021660 126 QDFASTQSFSF-----GVKASVKLVLLDEADAMTKDA----QFALRRVIEKYT---------------KNTRFALICNQV 181 (309)
Q Consensus 126 ~~~~~~~~~~~-----~~~~~~~lliiDe~~~l~~~~----~~~l~~~l~~~~---------------~~~~~i~~~~~~ 181 (309)
+.+..+.+..+ ..+....+++|||+|+++.+. ..+|+++|+.-. .++.||+|+|..
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl 476 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSL 476 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCcc
Confidence 22222111100 001145699999999997543 567888877211 356788888999
Q ss_pred cccchhhhcceeEEEecCCChHHHHHHHHHHH-----HHcC-----CCCCHHHHHHHHHHhc--CCHHHHHHHHHHHHhh
Q 021660 182 NKIIPALQSRCTRFRFAPLEPVHVTERLKHVI-----EAEG-----LDVTEGGLAALVRLCN--GDMRKALNILQSTHMA 249 (309)
Q Consensus 182 ~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~-----~~~~-----~~~~~~~l~~i~~~~~--g~~r~~~~~l~~~~~~ 249 (309)
..++..|+.|+.+|.+..++.+|-.+|.++++ +..| +.++++++..|.+.+- .-+|.+-..+.+++..
T Consensus 477 ~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK 556 (782)
T COG0466 477 DTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKICRK 556 (782)
T ss_pred ccCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999988877754 3333 4689999999998872 2255555555444432
Q ss_pred c----------C--CcCHHHHHhhhCCC
Q 021660 250 S----------Q--QITEEAVYLCTGNP 265 (309)
Q Consensus 250 ~----------~--~i~~~~v~~~~~~~ 265 (309)
. . .++...+.+.++..
T Consensus 557 ~~~~i~~~~~k~~~~i~~~~l~~yLG~~ 584 (782)
T COG0466 557 AAKKILLKKEKSIVKIDEKNLKKYLGVP 584 (782)
T ss_pred HHHHHHhcCcccceeeCHHHHHHHhCCc
Confidence 1 1 36677777777554
No 142
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.64 E-value=7.4e-15 Score=140.83 Aligned_cols=196 Identities=14% Similarity=0.186 Sum_probs=140.5
Q ss_pred hcCCCCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCc-----ccccEEEEecCCC----c
Q 021660 46 KYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-----YHNMILELNASDD----R 116 (309)
Q Consensus 46 ~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-----~~~~~~~~~~~~~----~ 116 (309)
.-+...+++++|++..++.+.+++.....++++|+||||||||++|+.++..+.... .+..+..++.... .
T Consensus 172 ~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~ 251 (821)
T CHL00095 172 EAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTK 251 (821)
T ss_pred HHHcCCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCC
Confidence 345668899999999999999999988888899999999999999999999984321 1345555554321 1
Q ss_pred chHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHH--------HHHHHHHHHHHhcCCceEEEEecCCc-----c
Q 021660 117 GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD--------AQFALRRVIEKYTKNTRFALICNQVN-----K 183 (309)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~--------~~~~l~~~l~~~~~~~~~i~~~~~~~-----~ 183 (309)
....+.+.+......... .++.||+|||+|.+... ..+.|...+.+ ....+|.+|+... .
T Consensus 252 ~~ge~e~rl~~i~~~~~~-----~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r--g~l~~IgaTt~~ey~~~ie 324 (821)
T CHL00095 252 YRGEFEERLKRIFDEIQE-----NNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR--GELQCIGATTLDEYRKHIE 324 (821)
T ss_pred CccHHHHHHHHHHHHHHh-----cCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--CCcEEEEeCCHHHHHHHHh
Confidence 122333444444332111 14679999999977532 24455555542 3456777776432 3
Q ss_pred cchhhhcceeEEEecCCChHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHhcC------CHHHHHHHHHHHHh
Q 021660 184 IIPALQSRCTRFRFAPLEPVHVTERLKHVIE----AEGLDVTEGGLAALVRLCNG------DMRKALNILQSTHM 248 (309)
Q Consensus 184 l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~l~~i~~~~~g------~~r~~~~~l~~~~~ 248 (309)
..+.+.+||..+.+..|+.++...+++.... ..++.++++++..+++.+.| -|+.++++|+.++.
T Consensus 325 ~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a 399 (821)
T CHL00095 325 KDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGS 399 (821)
T ss_pred cCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHH
Confidence 5689999999999999999998888776443 34677999999999998864 48999999987765
No 143
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=99.64 E-value=1.4e-13 Score=119.11 Aligned_cols=233 Identities=16% Similarity=0.232 Sum_probs=172.5
Q ss_pred HHHhcC-CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEE
Q 021660 67 RLTSEN-RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLV 145 (309)
Q Consensus 67 ~~~~~~-~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 145 (309)
..+... ..+.+++||+.-.=....+..+.+.....++...+..+.... . .+...+. ...+.+. |+ +++++
T Consensus 8 ~~l~~~~~~~v~ll~G~d~~l~~e~~~~i~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~-~~~s~~l-F~---~~~~v 78 (334)
T COG1466 8 KHLKKKNLMPVYLLYGEDEGLLEEAADAILKRALADGFDENYSFFDDSE-L---DWADLLS-ELESPSL-FG---EKRLV 78 (334)
T ss_pred HHHhcCCCccEEEEecCChhHHHHHHHHHHHHHhccchhhHHhhccccc-C---CHHHHHH-Hhhcccc-cc---CCeeE
Confidence 334443 455599999997777777777777764333333333322222 1 1222222 2222222 33 45899
Q ss_pred EEeCCCCCC-HHHHHHHHHHHHHhc-CCceEEEEecCCcc---cchhhhcc--eeEEEecCCChHHHHHHHHHHHHHcCC
Q 021660 146 LLDEADAMT-KDAQFALRRVIEKYT-KNTRFALICNQVNK---IIPALQSR--CTRFRFAPLEPVHVTERLKHVIEAEGL 218 (309)
Q Consensus 146 iiDe~~~l~-~~~~~~l~~~l~~~~-~~~~~i~~~~~~~~---l~~~l~~r--~~~i~~~~~~~~~~~~~l~~~~~~~~~ 218 (309)
+|....... .+....+.......| .+..+++.++..+. ..+.+..- +..+.+.+++..++..|+..++++.|+
T Consensus 79 ~l~~~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~kl~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l 158 (334)
T COG1466 79 VLKNAEKKPNKDKNLALLELAALLPSTDLLLLVESNKLDKAKKLTKWLKKLAKAVVVECKPLDEAELPQWIKKRAKELGL 158 (334)
T ss_pred EEECCCCCcCchhHHHHHHHHcCCCCCCEEEEEecCCcchHHHHHHHHHHhccCceEecCCCCHHHHHHHHHHHHHHcCC
Confidence 999988765 444556666666666 55555555544432 22222222 457999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC--CcCHHHHHhhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 021660 219 DVTEGGLAALVRLCNGDMRKALNILQSTHMASQ--QITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRK 296 (309)
Q Consensus 219 ~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~~--~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 296 (309)
.+++++++.+++..+||...+.+.+++++.+.. .||.++|...+......+.+++.+++++++...++..+++++ ..
T Consensus 159 ~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~dail~g~~~~a~~~l~~L~-~~ 237 (334)
T COG1466 159 KIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADALLKGDVKKALRLLRDLL-LE 237 (334)
T ss_pred CCCHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHHHHHHCCCHHHHHHHHHHHH-Hc
Confidence 999999999999999999999999999998874 599999999999999999999999999999999999999999 89
Q ss_pred CCCHHHHHHHhhC
Q 021660 297 GLALVDIVREVTM 309 (309)
Q Consensus 297 g~~~~~~~~~l~~ 309 (309)
|++|..|++.|.+
T Consensus 238 ge~p~~il~~l~~ 250 (334)
T COG1466 238 GEEPLKLLAALTR 250 (334)
T ss_pred CCcHHHHHHHHHH
Confidence 9999999998753
No 144
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=3.7e-15 Score=120.77 Aligned_cols=175 Identities=19% Similarity=0.238 Sum_probs=122.6
Q ss_pred CccccccChHHHHHHHHHHh----------cCC--CCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcch
Q 021660 51 SLADVAAHRDIVDTIDRLTS----------ENR--LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 118 (309)
Q Consensus 51 ~~~~~ig~~~~~~~l~~~~~----------~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 118 (309)
.|+++.|-+.++++|++.+- +.+ ...+|||||||+||+.||+++|.+. +..|+.+++++..+.
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA-----nSTFFSvSSSDLvSK 205 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA-----NSTFFSVSSSDLVSK 205 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc-----CCceEEeehHHHHHH
Confidence 68999999999999988753 233 2339999999999999999999997 677777877764221
Q ss_pred --HHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHH--------H---HHHHHHHHHHh---cCCceEEEEecCCc
Q 021660 119 --DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD--------A---QFALRRVIEKY---TKNTRFALICNQVN 182 (309)
Q Consensus 119 --~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~--------~---~~~l~~~l~~~---~~~~~~i~~~~~~~ 182 (309)
.+-...+.++.+ ++....++||+|||+|.++.. . ...|+--|+.. ...+.++.+||-++
T Consensus 206 WmGESEkLVknLFe-----mARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw 280 (439)
T KOG0739|consen 206 WMGESEKLVKNLFE-----MARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPW 280 (439)
T ss_pred HhccHHHHHHHHHH-----HHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCch
Confidence 111222333322 122236889999999988621 1 12333334422 23345555778889
Q ss_pred ccchhhhcce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC
Q 021660 183 KIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGD 235 (309)
Q Consensus 183 ~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~ 235 (309)
.++.++++|| .+|.++-|.......+++-.+..--..++...+.++++.+.|.
T Consensus 281 ~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 281 VLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGY 334 (439)
T ss_pred hHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCC
Confidence 9999999999 7788887877777777776665555578899999999998774
No 145
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.63 E-value=2e-14 Score=122.76 Aligned_cols=218 Identities=13% Similarity=0.143 Sum_probs=133.2
Q ss_pred CCCCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCc----ccccEEEEe------------
Q 021660 48 RPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ----YHNMILELN------------ 111 (309)
Q Consensus 48 ~p~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~----~~~~~~~~~------------ 111 (309)
.|..|.+++|+++++..+.-.+-....+++||+|+||+|||++++.+++.+.+-. ....+....
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 82 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTT 82 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCc
Confidence 4667999999999999888655433346799999999999999999999984211 000000000
Q ss_pred --------------cCC--CcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc------
Q 021660 112 --------------ASD--DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT------ 169 (309)
Q Consensus 112 --------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~------ 169 (309)
.+. ..|.-.+...+..-........-..+++++|++||++.+++..+..|++.|++..
T Consensus 83 ~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v~r~ 162 (334)
T PRK13407 83 MIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVERE 162 (334)
T ss_pred ccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCeEEEEC
Confidence 000 0111111111110000000000012356799999999999999999999998532
Q ss_pred -------CCceEEEEecCCc-ccchhhhcce-eEEEecCCCh-HHHHHHHHHHHHH------------------------
Q 021660 170 -------KNTRFALICNQVN-KIIPALQSRC-TRFRFAPLEP-VHVTERLKHVIEA------------------------ 215 (309)
Q Consensus 170 -------~~~~~i~~~~~~~-~l~~~l~~r~-~~i~~~~~~~-~~~~~~l~~~~~~------------------------ 215 (309)
....++.+.|..+ .+.+++..|| ..+.+.+++. ++..+++.+....
T Consensus 163 G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 242 (334)
T PRK13407 163 GLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILG 242 (334)
T ss_pred CeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHH
Confidence 2223333335433 5788899998 6677777765 5656666543211
Q ss_pred -----cCCCCCHHHHHHHHHHh---c-CCHHHHHHHHHHHHhhc-----CCcCHHHHHhhhCCC
Q 021660 216 -----EGLDVTEGGLAALVRLC---N-GDMRKALNILQSTHMAS-----QQITEEAVYLCTGNP 265 (309)
Q Consensus 216 -----~~~~~~~~~l~~i~~~~---~-g~~r~~~~~l~~~~~~~-----~~i~~~~v~~~~~~~ 265 (309)
..+.++++.++++++.+ + ..+|..+.+++.+...+ +.++.++|..+....
T Consensus 243 a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~~~~~v 306 (334)
T PRK13407 243 ARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAFEGAEAVGRSHLRSVATMA 306 (334)
T ss_pred HHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHcCCCeeCHHHHHHHHHHh
Confidence 23568888888888765 2 35777777665444332 579999998777443
No 146
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.63 E-value=4.9e-14 Score=112.87 Aligned_cols=191 Identities=18% Similarity=0.235 Sum_probs=133.7
Q ss_pred hhhcCCCCccccccChHHHHHH----HHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchH
Q 021660 44 VEKYRPQSLADVAAHRDIVDTI----DRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 119 (309)
Q Consensus 44 ~~~~~p~~~~~~ig~~~~~~~l----~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (309)
+....|..+++++|-+..++.+ .+.+.+....++||+|+.|||||++++++..+....+ ..++++.........
T Consensus 18 i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G--LRlIev~k~~L~~l~ 95 (249)
T PF05673_consen 18 IKHPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG--LRLIEVSKEDLGDLP 95 (249)
T ss_pred cCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC--ceEEEECHHHhccHH
Confidence 3556677899999977666654 4556666666799999999999999999999986555 567777766655555
Q ss_pred HHHHHHHHhhhccccccCCCCccEEEEEeCCCCCC-HHHHHHHHHHHH----HhcCCceEEEEecCCcccch--------
Q 021660 120 VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT-KDAQFALRRVIE----KYTKNTRFALICNQVNKIIP-------- 186 (309)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~-~~~~~~l~~~l~----~~~~~~~~i~~~~~~~~l~~-------- 186 (309)
.+...+.... .+-||++||+..=. ...-..|..+|+ ..|.++.+..|+|...-+.+
T Consensus 96 ~l~~~l~~~~-----------~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~ 164 (249)
T PF05673_consen 96 ELLDLLRDRP-----------YKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDI 164 (249)
T ss_pred HHHHHHhcCC-----------CCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccCC
Confidence 5554444211 46789999965332 233456666666 35566666667653321111
Q ss_pred ---------------hhhcce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHH-----HHHHHHhcCCHHHHHHHHHH
Q 021660 187 ---------------ALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGL-----AALVRLCNGDMRKALNILQS 245 (309)
Q Consensus 187 ---------------~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l-----~~i~~~~~g~~r~~~~~l~~ 245 (309)
+|..|| ..+.|.+++.++..++++..+.+.|+.++++.+ +.-..+.+.+.|.|...++.
T Consensus 165 ~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 165 QDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGGRSGRTARQFIDD 244 (249)
T ss_pred CccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 355677 889999999999999999999999999996444 33334445688888877766
Q ss_pred HH
Q 021660 246 TH 247 (309)
Q Consensus 246 ~~ 247 (309)
+.
T Consensus 245 l~ 246 (249)
T PF05673_consen 245 LA 246 (249)
T ss_pred Hh
Confidence 54
No 147
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.63 E-value=1.3e-14 Score=137.23 Aligned_cols=209 Identities=20% Similarity=0.227 Sum_probs=137.5
Q ss_pred cccccChHHHHHHHHHHhc------CCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHH
Q 021660 53 ADVAAHRDIVDTIDRLTSE------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQ 126 (309)
Q Consensus 53 ~~~ig~~~~~~~l~~~~~~------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (309)
.++.|.+.+++.+.+++.. ...+.++|+||||+|||++++.+++.+ +..+..++.........+.....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l-----~~~~~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT-----GRKYVRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCEEEEEcCCCCCHHHhccchh
Confidence 4589999999999887762 234559999999999999999999988 44555555443222222221111
Q ss_pred Hhhhccccc----cC-CCCccEEEEEeCCCCCCHHH----HHHHHHHHHHh---------------cCCceEEEEecCCc
Q 021660 127 DFASTQSFS----FG-VKASVKLVLLDEADAMTKDA----QFALRRVIEKY---------------TKNTRFALICNQVN 182 (309)
Q Consensus 127 ~~~~~~~~~----~~-~~~~~~lliiDe~~~l~~~~----~~~l~~~l~~~---------------~~~~~~i~~~~~~~ 182 (309)
......+.. +. ......+++|||+|++.+.. ...|+.+++.- -.++.||+|+|..
T Consensus 397 ~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~- 475 (784)
T PRK10787 397 TYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM- 475 (784)
T ss_pred ccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-
Confidence 111000000 00 00134589999999998764 47899888741 1355677777776
Q ss_pred ccchhhhcceeEEEecCCChHHHHHHHHHHHHH-----c-----CCCCCHHHHHHHHHHhc--CCHHHHHHHHHHHHhh-
Q 021660 183 KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA-----E-----GLDVTEGGLAALVRLCN--GDMRKALNILQSTHMA- 249 (309)
Q Consensus 183 ~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~-----~-----~~~~~~~~l~~i~~~~~--g~~r~~~~~l~~~~~~- 249 (309)
.++++|++|+.++.|.+++.++..+++++++.. . .+.++++++..|++.+. --.|.+...++..+..
T Consensus 476 ~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~ 555 (784)
T PRK10787 476 NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKA 555 (784)
T ss_pred CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHH
Confidence 599999999999999999999999998887741 1 24689999999998652 1133333333332211
Q ss_pred ------c-----CCcCHHHHHhhhCCCCh
Q 021660 250 ------S-----QQITEEAVYLCTGNPLP 267 (309)
Q Consensus 250 ------~-----~~i~~~~v~~~~~~~~~ 267 (309)
. -.++.+.+.+.++....
T Consensus 556 l~~~~~~~~~~~v~v~~~~~~~~lg~~~~ 584 (784)
T PRK10787 556 VKQLLLDKSLKHIEINGDNLHDYLGVQRF 584 (784)
T ss_pred HHHHHhcCCCceeeecHHHHHHHhCCCcc
Confidence 1 14888888888876543
No 148
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.62 E-value=2.1e-14 Score=141.15 Aligned_cols=180 Identities=13% Similarity=0.098 Sum_probs=119.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcc--------------------------------------
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG-------------------------------------- 117 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------- 117 (309)
.+||+||||||||.||+++|.+. .+.++.++..+-..
T Consensus 1632 GILLiGPPGTGKTlLAKALA~es-----~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n 1706 (2281)
T CHL00206 1632 GILVIGSIGTGRSYLVKYLATNS-----YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMN 1706 (2281)
T ss_pred ceEEECCCCCCHHHHHHHHHHhc-----CCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcc
Confidence 49999999999999999999998 44444444322110
Q ss_pred -------hHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHH-----HHHHHHHHHHh-----cCCceEEEEecC
Q 021660 118 -------IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDA-----QFALRRVIEKY-----TKNTRFALICNQ 180 (309)
Q Consensus 118 -------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~-----~~~l~~~l~~~-----~~~~~~i~~~~~ 180 (309)
...-...+....+ .+....|+||+|||+|.+.... .+.|+..|+.. ...++||++||.
T Consensus 1707 ~~~~~m~~~e~~~rIr~lFe-----lARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNR 1781 (2281)
T CHL00206 1707 ALTMDMMPKIDRFYITLQFE-----LAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHI 1781 (2281)
T ss_pred hhhhhhhhhhhHHHHHHHHH-----HHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCC
Confidence 0000000111111 1111268999999999997532 45666666632 234567778899
Q ss_pred Ccccchhhhc--ce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHhcCCH-HHHHHHHHHHHhhc----
Q 021660 181 VNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEG--GLAALVRLCNGDM-RKALNILQSTHMAS---- 250 (309)
Q Consensus 181 ~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~l~~i~~~~~g~~-r~~~~~l~~~~~~~---- 250 (309)
++.+++++++ |+ ..|.++.|+..+..+++...+...+..+.++ .++.+++.+.|-. +.+.+++..++..+
T Consensus 1782 PD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ 1861 (2281)
T CHL00206 1782 PQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQK 1861 (2281)
T ss_pred cccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 9999999998 77 7889999988888887776555556666543 4788999997743 44444445555433
Q ss_pred -CCcCHHHHHhhhCCC
Q 021660 251 -QQITEEAVYLCTGNP 265 (309)
Q Consensus 251 -~~i~~~~v~~~~~~~ 265 (309)
..|+.++++.++.+.
T Consensus 1862 ks~Id~~~I~~Al~Rq 1877 (2281)
T CHL00206 1862 KSIIDTNTIRSALHRQ 1877 (2281)
T ss_pred CCccCHHHHHHHHHHH
Confidence 468888888887543
No 149
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.61 E-value=3.4e-14 Score=132.47 Aligned_cols=201 Identities=19% Similarity=0.207 Sum_probs=133.9
Q ss_pred cCCCCccccccChHHHHHHHHHHhc------------CCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCC
Q 021660 47 YRPQSLADVAAHRDIVDTIDRLTSE------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (309)
Q Consensus 47 ~~p~~~~~~ig~~~~~~~l~~~~~~------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 114 (309)
.....+.++.|....+..+...+.. .-+.+++|+||||+|||++++.+++++ ...++.+++..
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~-----~~~f~~is~~~ 220 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA-----KVPFFTISGSD 220 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc-----CCCEEEEehHH
Confidence 3345688899988888777665431 113349999999999999999999997 55666666543
Q ss_pred C------cchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHH--------------HHHHHHHHHHHhc--CCc
Q 021660 115 D------RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD--------------AQFALRRVIEKYT--KNT 172 (309)
Q Consensus 115 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~--------------~~~~l~~~l~~~~--~~~ 172 (309)
. .+...++..+..... ..+++|+|||+|.+... ..+.|+..++... ...
T Consensus 221 ~~~~~~g~~~~~~~~~f~~a~~---------~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~v 291 (644)
T PRK10733 221 FVEMFVGVGASRVRDMFEQAKK---------AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 291 (644)
T ss_pred hHHhhhcccHHHHHHHHHHHHh---------cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCe
Confidence 1 122233333333211 15789999999988421 2344544455433 345
Q ss_pred eEEEEecCCcccchhhhc--ce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC----CHHHHHHHHHH
Q 021660 173 RFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG----DMRKALNILQS 245 (309)
Q Consensus 173 ~~i~~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g----~~r~~~~~l~~ 245 (309)
.+|.+||.++.+++++.+ || ..+.++.|+.++..++++.++++....- +..+..+++.+.| ++..+++....
T Consensus 292 ivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~-~~d~~~la~~t~G~sgadl~~l~~eAa~ 370 (644)
T PRK10733 292 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAP-DIDAAIIARGTPGFSGADLANLVNEAAL 370 (644)
T ss_pred eEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCC-cCCHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 677788999999999986 77 7899999999999999999887654322 2335678888877 55555444433
Q ss_pred HHhh--cCCcCHHHHHhhh
Q 021660 246 THMA--SQQITEEAVYLCT 262 (309)
Q Consensus 246 ~~~~--~~~i~~~~v~~~~ 262 (309)
.+.. ...|+..++..+.
T Consensus 371 ~a~r~~~~~i~~~d~~~a~ 389 (644)
T PRK10733 371 FAARGNKRVVSMVEFEKAK 389 (644)
T ss_pred HHHHcCCCcccHHHHHHHH
Confidence 2222 2468888877665
No 150
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=5.2e-15 Score=123.49 Aligned_cols=188 Identities=20% Similarity=0.283 Sum_probs=126.1
Q ss_pred CccccccChHHHHHHHHHHh----------cC----CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCc
Q 021660 51 SLADVAAHRDIVDTIDRLTS----------EN----RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR 116 (309)
Q Consensus 51 ~~~~~ig~~~~~~~l~~~~~----------~~----~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 116 (309)
+|.|+-|-+.+++.+.+.+- .+ ...+++++||||||||.+|++++++. +..++.+......
T Consensus 90 ~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea-----ga~fInv~~s~lt 164 (386)
T KOG0737|consen 90 SFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA-----GANFINVSVSNLT 164 (386)
T ss_pred ehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc-----CCCcceeeccccc
Confidence 68889999999998887753 11 22349999999999999999999998 4555555444322
Q ss_pred chHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHH-------H----HHHHHHHHHHh--cC--CceEEEEecCC
Q 021660 117 GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD-------A----QFALRRVIEKY--TK--NTRFALICNQV 181 (309)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~-------~----~~~l~~~l~~~--~~--~~~~i~~~~~~ 181 (309)
. .+...-..+..... .++.+-.|.+|+|||++.+... . .+.|...=+.. .. .+.|+.+||.+
T Consensus 165 ~--KWfgE~eKlv~AvF-slAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP 241 (386)
T KOG0737|consen 165 S--KWFGEAQKLVKAVF-SLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRP 241 (386)
T ss_pred h--hhHHHHHHHHHHHH-hhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCC
Confidence 2 11111111111111 1344457899999999877521 1 12222222221 12 23444567999
Q ss_pred cccchhhhcce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 021660 182 NKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH 247 (309)
Q Consensus 182 ~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~ 247 (309)
..+++++.+|+ .++++.-|+..+..+||+-+++.+.+. ++-.+..++..+.|.-+.-+..+...+
T Consensus 242 ~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGSDLkelC~~A 307 (386)
T KOG0737|consen 242 FDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGSDLKELCRLA 307 (386)
T ss_pred ccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCCcHHHHHHHHHHH
Confidence 99999999998 999999999999999999999988765 455578899999886665555443333
No 151
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.61 E-value=4.4e-14 Score=114.33 Aligned_cols=121 Identities=21% Similarity=0.302 Sum_probs=99.9
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecC-------------CcccchhhhcceeEEEecCCChHHHHHH
Q 021660 142 VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ-------------VNKIIPALQSRCTRFRFAPLEPVHVTER 208 (309)
Q Consensus 142 ~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~-------------~~~l~~~l~~r~~~i~~~~~~~~~~~~~ 208 (309)
+.+++|||++.+.-+....|.+.++.+- .+.+|+++|. +..+++.+..|..++...+++.++++++
T Consensus 297 PGVLFIDEVhMLDiEcFTyL~kalES~i-aPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r~I 375 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIECFTYLHKALESPI-APIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIRQI 375 (456)
T ss_pred CcceEeeehhhhhhHHHHHHHHHhcCCC-CceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCHHHHHHH
Confidence 6799999999999999999999998654 6677787753 3467889999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHh-cCCHHHHHHHHHHHHh----hc-CCcCHHHHHhhhC
Q 021660 209 LKHVIEAEGLDVTEGGLAALVRLC-NGDMRKALNILQSTHM----AS-QQITEEAVYLCTG 263 (309)
Q Consensus 209 l~~~~~~~~~~~~~~~l~~i~~~~-~g~~r~~~~~l~~~~~----~~-~~i~~~~v~~~~~ 263 (309)
++.+++.+++.++++++..+++.. .-.+|.++.+|.-+.. .+ +.|..++|+++..
T Consensus 376 i~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~ 436 (456)
T KOG1942|consen 376 IKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVTE 436 (456)
T ss_pred HHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHHH
Confidence 999999999999999999999965 5689999998863332 22 3677777766543
No 152
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=5.8e-14 Score=111.44 Aligned_cols=159 Identities=23% Similarity=0.345 Sum_probs=111.2
Q ss_pred cCCC-CccccccChHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEec
Q 021660 47 YRPQ-SLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (309)
Q Consensus 47 ~~p~-~~~~~ig~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 112 (309)
-.|. +..++-|-+-.++.+++.+.- ..+..+++|||||||||.|++++++.. ...|+.+..
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t-----~a~firvvg 222 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT-----TAAFIRVVG 222 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc-----chheeeecc
Confidence 3444 456677766666666666531 233449999999999999999999986 566666665
Q ss_pred CC------CcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH-----------HHHHHHHHHHHHh-----cC
Q 021660 113 SD------DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKY-----TK 170 (309)
Q Consensus 113 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~-----------~~~~~l~~~l~~~-----~~ 170 (309)
+. ..+...++..+.-.. ...+.+|+|||+|.+.. +.+..|+++++.. ..
T Consensus 223 sefvqkylgegprmvrdvfrlak---------enapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~ 293 (408)
T KOG0727|consen 223 SEFVQKYLGEGPRMVRDVFRLAK---------ENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTT 293 (408)
T ss_pred HHHHHHHhccCcHHHHHHHHHHh---------ccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCccc
Confidence 43 123333333333222 12578999999998752 3466777777753 45
Q ss_pred CceEEEEecCCcccchhhhcce---eEEEecCCChHHHHHHHHHHHHHcCCC
Q 021660 171 NTRFALICNQVNKIIPALQSRC---TRFRFAPLEPVHVTERLKHVIEAEGLD 219 (309)
Q Consensus 171 ~~~~i~~~~~~~~l~~~l~~r~---~~i~~~~~~~~~~~~~l~~~~~~~~~~ 219 (309)
++.+|++||..+.+++++.+.. ..|+|+-|+..+.+-++..+..+-++.
T Consensus 294 nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls 345 (408)
T KOG0727|consen 294 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLS 345 (408)
T ss_pred ceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCC
Confidence 7789999999999999998854 679999888888888887777665543
No 153
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.61 E-value=1e-14 Score=109.22 Aligned_cols=113 Identities=29% Similarity=0.367 Sum_probs=81.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCc--chHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCC
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR--GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT 154 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~ 154 (309)
++|+||||+|||++++.+++.+ +..++.+++.... ......+.+......... .. .+.+|+|||+|.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l-----~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~-~~---~~~vl~iDe~d~l~ 71 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL-----GFPFIEIDGSELISSYAGDSEQKIRDFFKKAKK-SA---KPCVLFIDEIDKLF 71 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT-----TSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHH-TS---TSEEEEEETGGGTS
T ss_pred CEEECcCCCCeeHHHHHHHhhc-----ccccccccccccccccccccccccccccccccc-cc---cceeeeeccchhcc
Confidence 6899999999999999999998 6778888876532 112222233333222111 00 26899999999998
Q ss_pred HHH-----------HHHHHHHHHHhcC---CceEEEEecCCcccchhhh-cce-eEEEec
Q 021660 155 KDA-----------QFALRRVIEKYTK---NTRFALICNQVNKIIPALQ-SRC-TRFRFA 198 (309)
Q Consensus 155 ~~~-----------~~~l~~~l~~~~~---~~~~i~~~~~~~~l~~~l~-~r~-~~i~~~ 198 (309)
... .+.|...++.... ...+|+++|..+.+++.+. +|| ..+.++
T Consensus 72 ~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 72 PKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp HHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-
T ss_pred cccccccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEcC
Confidence 765 6778888887664 4688888999999999999 998 556653
No 154
>PRK14700 recombination factor protein RarA; Provisional
Probab=99.61 E-value=3.3e-14 Score=116.98 Aligned_cols=136 Identities=18% Similarity=0.220 Sum_probs=116.1
Q ss_pred ceEEEEe--cCCcccchhhhcceeEEEecCCChHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHhcCCHHHHHHHH
Q 021660 172 TRFALIC--NQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE------GLDVTEGGLAALVRLCNGDMRKALNIL 243 (309)
Q Consensus 172 ~~~i~~~--~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~l~~i~~~~~g~~r~~~~~l 243 (309)
..+|.+| |+...+.++|++||+++.|.+++.+++..++++-+... .+.+++++++.|++.++||.|.++|.|
T Consensus 9 i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDaR~aLN~L 88 (300)
T PRK14700 9 IILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDCRKILNLL 88 (300)
T ss_pred EEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHHHHHHHHH
Confidence 3455555 55668899999999999999999999999999988742 367999999999999999999999999
Q ss_pred HHHHhhc---C--CcCHHHHHhhhC----------CCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 244 QSTHMAS---Q--QITEEAVYLCTG----------NPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 244 ~~~~~~~---~--~i~~~~v~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
+.+.... + .||.+.+.+.+. ..-++.++.++++++++|++.++++|+.|+ ..|++|.-|.+.|.
T Consensus 89 E~a~~~~~~~~~~~it~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml-~~GEDp~~IaRRLi 167 (300)
T PRK14700 89 ERMFLISTRGDEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVML-DNGVDPLVIARRML 167 (300)
T ss_pred HHHHhhccccCCCccCHHHHHHHHhHHHhcccCCcchhHHHHHHHHHHhhcCCccHHHHHHHHHH-HcCCCHHHHHHHHH
Confidence 9966422 1 289999887763 345778999999999999999999999999 99999999998775
No 155
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=3.9e-14 Score=127.91 Aligned_cols=175 Identities=23% Similarity=0.281 Sum_probs=118.8
Q ss_pred hhcCCCCccccccChHHHHHHHHHHhc----------C-C-CCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEec
Q 021660 45 EKYRPQSLADVAAHRDIVDTIDRLTSE----------N-R-LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (309)
Q Consensus 45 ~~~~p~~~~~~ig~~~~~~~l~~~~~~----------~-~-~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 112 (309)
.+..-.+|+|+-|-++++..+..-+.- + + ...++||||||||||-+|+++|-++ +..|..+..
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc-----sL~FlSVKG 738 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC-----SLNFLSVKG 738 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc-----eeeEEeecC
Confidence 334445789999999999988887753 1 2 2349999999999999999999998 777777766
Q ss_pred CCCc------chHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHH-------------HHHHHHHHHHHhc----
Q 021660 113 SDDR------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD-------------AQFALRRVIEKYT---- 169 (309)
Q Consensus 113 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~-------------~~~~l~~~l~~~~---- 169 (309)
.... +.+.+++.+..... +.++||++||+|.+.+. ....|+.-|+..+
T Consensus 739 PELLNMYVGqSE~NVR~VFerAR~---------A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s 809 (953)
T KOG0736|consen 739 PELLNMYVGQSEENVREVFERARS---------AAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSS 809 (953)
T ss_pred HHHHHHHhcchHHHHHHHHHHhhc---------cCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCC
Confidence 5421 22233333333222 26899999999999643 3456666666544
Q ss_pred CCceEEEEecCCcccchhhhc--ce-eEEEecCCChHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 021660 170 KNTRFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVT-ERLKHVIEAEGLDVTEGGLAALVRLCNG 234 (309)
Q Consensus 170 ~~~~~i~~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~l~~i~~~~~g 234 (309)
..+.+|.+||+++-++++|.+ || ..+++.+....+-+ .+|+..-++.... ++-.+..|++.++-
T Consensus 810 ~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLd-edVdL~eiAk~cp~ 877 (953)
T KOG0736|consen 810 QDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLD-EDVDLVEIAKKCPP 877 (953)
T ss_pred CceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCC-CCcCHHHHHhhCCc
Confidence 345566788999999999987 56 56777777665544 4455444443322 23346788888753
No 156
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2.9e-14 Score=127.86 Aligned_cols=186 Identities=18% Similarity=0.259 Sum_probs=131.7
Q ss_pred ccccccChHHHHHHHHHHhcC------CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHH--
Q 021660 52 LADVAAHRDIVDTIDRLTSEN------RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQ-- 123 (309)
Q Consensus 52 ~~~~ig~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 123 (309)
-++-.|-+.+++++.+++.-+ +.+.++|+||||+|||++++.+|+.+ +..|+.++........+++.
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL-----nRkFfRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL-----NRKFFRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh-----CCceEEEeccccccHHhhcccc
Confidence 356788899999998887633 23449999999999999999999999 55555555544333333322
Q ss_pred ---------HHHHhhhccccccCCCCccEEEEEeCCCCCCH----HHHHHHHHHHHHh------------c---CCceEE
Q 021660 124 ---------QIQDFASTQSFSFGVKASVKLVLLDEADAMTK----DAQFALRRVIEKY------------T---KNTRFA 175 (309)
Q Consensus 124 ---------~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~----~~~~~l~~~l~~~------------~---~~~~~i 175 (309)
.+-+..+.... ...+++|||+|++.. +-..+|+++++.- | ..+.||
T Consensus 485 RTYVGAMPGkiIq~LK~v~t------~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFi 558 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKT------ENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFI 558 (906)
T ss_pred eeeeccCChHHHHHHHhhCC------CCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEE
Confidence 22222222221 567999999999973 2246777777621 1 245678
Q ss_pred EEecCCcccchhhhcceeEEEecCCChHHHHHHHHHHHH-----Hc-----CCCCCHHHHHHHHHHhc--CCHHHHHHHH
Q 021660 176 LICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE-----AE-----GLDVTEGGLAALVRLCN--GDMRKALNIL 243 (309)
Q Consensus 176 ~~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~-----~~-----~~~~~~~~l~~i~~~~~--g~~r~~~~~l 243 (309)
+|+|..+.+++.|+.|+.+|++..+..+|-.+|..+++- +. .+.++++++..+.+++- .-+|.+...+
T Consensus 559 cTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~i 638 (906)
T KOG2004|consen 559 CTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQI 638 (906)
T ss_pred EeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 888999999999999999999999999999888777653 22 35789999988888762 2366666666
Q ss_pred HHHHh
Q 021660 244 QSTHM 248 (309)
Q Consensus 244 ~~~~~ 248 (309)
++++.
T Consensus 639 ekI~R 643 (906)
T KOG2004|consen 639 EKICR 643 (906)
T ss_pred HHHHH
Confidence 55543
No 157
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.60 E-value=4.9e-14 Score=129.66 Aligned_cols=209 Identities=18% Similarity=0.175 Sum_probs=143.3
Q ss_pred CCCCccccccChHHHHHHHHHHhcCC--CCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHH
Q 021660 48 RPQSLADVAAHRDIVDTIDRLTSENR--LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQI 125 (309)
Q Consensus 48 ~p~~~~~~ig~~~~~~~l~~~~~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (309)
+...++.++|+...++.+.+.+.... ..+++|+|++||||+++|+.+..... .....++.++|..... ..+...+
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~--r~~~pfv~i~c~~~~~-~~~~~~l 267 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP--RAKRPFVKVNCAALSE-TLLESEL 267 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC--CCCCCeEEeecCCCCH-HHHHHHH
Confidence 34578899999999888877765432 23499999999999999999988752 2345788889876432 2222222
Q ss_pred HHhhhcc-------ccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCceEEEEecCC------
Q 021660 126 QDFASTQ-------SFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV------ 181 (309)
Q Consensus 126 ~~~~~~~-------~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~~i~~~~~~------ 181 (309)
....... ....-..+++++|+|||++.++...+..|+.+++... .++++|++++..
T Consensus 268 fg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~ 347 (534)
T TIGR01817 268 FGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVA 347 (534)
T ss_pred cCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHHHH
Confidence 1100000 0001112357899999999999999999999998632 235777776543
Q ss_pred -cccchhhhcce--eEEEecCCC--hHHHHHHHHHHHHH----cC--CCCCHHHHHHHHHH-hcCCHHHHHHHHHHHHhh
Q 021660 182 -NKIIPALQSRC--TRFRFAPLE--PVHVTERLKHVIEA----EG--LDVTEGGLAALVRL-CNGDMRKALNILQSTHMA 249 (309)
Q Consensus 182 -~~l~~~l~~r~--~~i~~~~~~--~~~~~~~l~~~~~~----~~--~~~~~~~l~~i~~~-~~g~~r~~~~~l~~~~~~ 249 (309)
....+.|..|+ ..+.++|+. .+++..++...+.+ .+ ..+++++++.+..+ ++||+|.+.+.++.++..
T Consensus 348 ~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~ 427 (534)
T TIGR01817 348 KGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERTATL 427 (534)
T ss_pred cCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 13345566666 457777776 46676666655543 22 56899999999998 499999999999988765
Q ss_pred c--CCcCHHHHH
Q 021660 250 S--QQITEEAVY 259 (309)
Q Consensus 250 ~--~~i~~~~v~ 259 (309)
+ ..|+.+++.
T Consensus 428 ~~~~~I~~~~l~ 439 (534)
T TIGR01817 428 SRSGTITRSDFS 439 (534)
T ss_pred CCCCcccHHHCc
Confidence 4 457777764
No 158
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=8.6e-14 Score=127.10 Aligned_cols=206 Identities=17% Similarity=0.237 Sum_probs=138.6
Q ss_pred CCCccccccChHHHHHHHHHHhc------------CCC-CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCC
Q 021660 49 PQSLADVAAHRDIVDTIDRLTSE------------NRL-PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115 (309)
Q Consensus 49 p~~~~~~ig~~~~~~~l~~~~~~------------~~~-~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 115 (309)
...+.++.|....+..++..+.. .+. ..+||+||||||||+++++++.++ +..++.+.....
T Consensus 238 ~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~-----~~~fi~v~~~~l 312 (494)
T COG0464 238 DVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES-----RSRFISVKGSEL 312 (494)
T ss_pred CcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC-----CCeEEEeeCHHH
Confidence 34677888877777766666531 122 249999999999999999999987 777777776632
Q ss_pred cc--hHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH-----------HHHHHHHHHHHHhc--CCceEEEEecC
Q 021660 116 RG--IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKYT--KNTRFALICNQ 180 (309)
Q Consensus 116 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~-----------~~~~~l~~~l~~~~--~~~~~i~~~~~ 180 (309)
.+ ..+....+........ +..+++|+|||+|.+.. ...+.|+..++... .++.+|.+||.
T Consensus 313 ~sk~vGesek~ir~~F~~A~-----~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~ 387 (494)
T COG0464 313 LSKWVGESEKNIRELFEKAR-----KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNR 387 (494)
T ss_pred hccccchHHHHHHHHHHHHH-----cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCC
Confidence 22 2233333333332211 12678999999998852 23556666665332 34556778899
Q ss_pred Ccccchhhhc--ce-eEEEecCCChHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhcCCHHH-HHHHHHHHHhhc-----
Q 021660 181 VNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLD-VTEGGLAALVRLCNGDMRK-ALNILQSTHMAS----- 250 (309)
Q Consensus 181 ~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~l~~i~~~~~g~~r~-~~~~l~~~~~~~----- 250 (309)
++.+++++.+ |+ ..+.+++|+..+..++++..+...... .++..++.+++.+.|..+. +..+++.+...+
T Consensus 388 p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~ 467 (494)
T COG0464 388 PDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR 467 (494)
T ss_pred ccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999 88 889999999999999999998866654 4567778888877764333 333334444322
Q ss_pred -CCcCHHHHHhhhCC
Q 021660 251 -QQITEEAVYLCTGN 264 (309)
Q Consensus 251 -~~i~~~~v~~~~~~ 264 (309)
..++.+++..+...
T Consensus 468 ~~~~~~~~~~~a~~~ 482 (494)
T COG0464 468 RREVTLDDFLDALKK 482 (494)
T ss_pred cCCccHHHHHHHHHh
Confidence 24555555555543
No 159
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=99.59 E-value=1.7e-14 Score=135.72 Aligned_cols=203 Identities=25% Similarity=0.412 Sum_probs=160.6
Q ss_pred CcChhhhcCCCCccccccChHHHHHHHHHHhcC------------CC--C--eEEEECCCCCcHHHHHHHHHHHHccCcc
Q 021660 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSEN------------RL--P--HLLLYGPPGTGKTSTILAVARKLYGAQY 103 (309)
Q Consensus 40 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~------------~~--~--~~ll~G~~G~GKT~l~~~l~~~~~~~~~ 103 (309)
...|.++|+|.+..++.|.......+.+|++.. .. . .++++||||+|||+.+..+++.+
T Consensus 307 ~~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~----- 381 (871)
T KOG1968|consen 307 GAGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKEL----- 381 (871)
T ss_pred ccccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhc-----
Confidence 478999999999999999988888888887644 11 1 15999999999999999999998
Q ss_pred cccEEEEecCCCcchHHHHHHHHHhhhccccccC---------CCCccEEEEEeCCCCCCHHH---HHHHHHHHHHhcCC
Q 021660 104 HNMILELNASDDRGIDVVRQQIQDFASTQSFSFG---------VKASVKLVLLDEADAMTKDA---QFALRRVIEKYTKN 171 (309)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~lliiDe~~~l~~~~---~~~l~~~l~~~~~~ 171 (309)
+..+++.+..+.++...+...+..+......... ......||++||+|.+..+. +..+..++. ...
T Consensus 382 g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg~v~~l~~l~~--ks~ 459 (871)
T KOG1968|consen 382 GFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRGGVSKLSSLCK--KSS 459 (871)
T ss_pred ccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccchhhhhHHHHHHHHH--hcc
Confidence 7899999999887776777666665444333111 11124499999999998744 344455555 335
Q ss_pred ceEEEEecCCcccch-hhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 021660 172 TRFALICNQVNKIIP-ALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA 249 (309)
Q Consensus 172 ~~~i~~~~~~~~l~~-~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~ 249 (309)
..+|+++|+...... .+.+.|..++|..|+...+...+..++..+++.++++.++.+.+.++||+|.+++.|+.....
T Consensus 460 ~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~~~DiR~~i~~lq~~~~~ 538 (871)
T KOG1968|consen 460 RPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLSGGDIRQIIMQLQFWSLS 538 (871)
T ss_pred CCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhcccCHHHHHHHHhhhhcc
Confidence 678888887765444 555556899999999999999999999999999999999999999999999999999998553
No 160
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.59 E-value=5.2e-14 Score=132.14 Aligned_cols=175 Identities=18% Similarity=0.245 Sum_probs=118.9
Q ss_pred cccccChHHHHHHHHHHhcC--------C-CCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHH
Q 021660 53 ADVAAHRDIVDTIDRLTSEN--------R-LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQ 123 (309)
Q Consensus 53 ~~~ig~~~~~~~l~~~~~~~--------~-~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (309)
..++||+++++.+...+... + ..+++|+||||||||.+|+.+++.+ +..++.+++........+..
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l-----~~~~i~id~se~~~~~~~~~ 532 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL-----GIELLRFDMSEYMERHTVSR 532 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCCcEEeechhhcccccHHH
Confidence 45899999999998887631 2 2349999999999999999999998 34556666543221111111
Q ss_pred HHHHhhhccc----ccc---CCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCceEEEEecCC----
Q 021660 124 QIQDFASTQS----FSF---GVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV---- 181 (309)
Q Consensus 124 ~~~~~~~~~~----~~~---~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~~i~~~~~~---- 181 (309)
.+..-..... ..+ -.....+||+|||++++.++.++.|++++++-. .++.+|++||..
T Consensus 533 LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~ 612 (758)
T PRK11034 533 LIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRET 612 (758)
T ss_pred HcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHH
Confidence 1110000000 000 001146899999999999999999999998521 355688888722
Q ss_pred ---------------------cccchhhhcce-eEEEecCCChHHHHHHHHHHHH-------HcCC--CCCHHHHHHHHH
Q 021660 182 ---------------------NKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIE-------AEGL--DVTEGGLAALVR 230 (309)
Q Consensus 182 ---------------------~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~-------~~~~--~~~~~~l~~i~~ 230 (309)
..+.|.+..|+ .++.|.|++.+++.+++...+. ..|+ .+++++++.|++
T Consensus 613 ~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~ 692 (758)
T PRK11034 613 ERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAE 692 (758)
T ss_pred hhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHH
Confidence 12347788888 6899999999999998876554 2344 568999999997
Q ss_pred Hh
Q 021660 231 LC 232 (309)
Q Consensus 231 ~~ 232 (309)
..
T Consensus 693 ~~ 694 (758)
T PRK11034 693 KG 694 (758)
T ss_pred hC
Confidence 65
No 161
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.58 E-value=8.4e-15 Score=120.76 Aligned_cols=184 Identities=18% Similarity=0.291 Sum_probs=107.7
Q ss_pred cccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHH----------
Q 021660 55 VAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQ---------- 124 (309)
Q Consensus 55 ~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 124 (309)
|+|++..++.|.+++..+....++|+||.|+|||++++.+.+.+...+....++ ..............
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~--~~~~~~~~~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYI--DFLEESNESSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHH--CCTTBSHHHHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEE--ecccchhhhHHHHHHHHHHHHHHH
Confidence 589999999999999987777799999999999999999999984433322222 11111111111111
Q ss_pred ---HHHhhhccc----------cc----------cCCCCccEEEEEeCCCCCC------HHHHHHHHHHHHH--hcCCce
Q 021660 125 ---IQDFASTQS----------FS----------FGVKASVKLVLLDEADAMT------KDAQFALRRVIEK--YTKNTR 173 (309)
Q Consensus 125 ---~~~~~~~~~----------~~----------~~~~~~~~lliiDe~~~l~------~~~~~~l~~~l~~--~~~~~~ 173 (309)
+........ .. +.....+.+|+|||++.+. ......|..+++. ...+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 158 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVS 158 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEE
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCce
Confidence 110000000 00 0011134899999999988 3445667777776 233555
Q ss_pred EEEEecCCcc------cchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhcCCHHHHHH
Q 021660 174 FALICNQVNK------IIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV--TEGGLAALVRLCNGDMRKALN 241 (309)
Q Consensus 174 ~i~~~~~~~~------l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~l~~i~~~~~g~~r~~~~ 241 (309)
+|++++.... -...+..|+..+.+.+++.++..+++...+... ..+ +++.++.+...++|+|+.+..
T Consensus 159 ~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 159 IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 6666654321 122356677669999999999999999988776 655 999999999999999998753
No 162
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.58 E-value=1e-13 Score=132.53 Aligned_cols=185 Identities=27% Similarity=0.383 Sum_probs=131.7
Q ss_pred cccccChHHHHHHHHHHhcC-------CCC--eEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHH-
Q 021660 53 ADVAAHRDIVDTIDRLTSEN-------RLP--HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVR- 122 (309)
Q Consensus 53 ~~~ig~~~~~~~l~~~~~~~-------~~~--~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 122 (309)
..++||+++++.+.+.+... ..| .++|+||+|+|||.+++.++..+.... ..++.++.........+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~--~~~~~~dmse~~~~~~~~~ 643 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGE--QNLITINMSEFQEAHTVSR 643 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCC--cceEEEeHHHhhhhhhhcc
Confidence 57899999999888887531 112 389999999999999999999985432 244444433211111100
Q ss_pred --------------HHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCceEEEE
Q 021660 123 --------------QQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALI 177 (309)
Q Consensus 123 --------------~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~~i~~ 177 (309)
..+..... +..++||+|||++++.++..+.|++++++-. .++.+|+|
T Consensus 644 l~g~~~gyvg~~~~g~L~~~v~--------~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 644 LKGSPPGYVGYGEGGVLTEAVR--------RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred ccCCCCCcccccccchHHHHHH--------hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 01111111 1156899999999999999999999999643 56788888
Q ss_pred ecCCc-----------------------------ccchhhhcceeEEEecCCChHHHHHHHHHHHHH-------c-C--C
Q 021660 178 CNQVN-----------------------------KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA-------E-G--L 218 (309)
Q Consensus 178 ~~~~~-----------------------------~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~-------~-~--~ 218 (309)
||... ...+.+.+|+.++.|.|++.+++.+++...+.+ . + +
T Consensus 716 SNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l 795 (852)
T TIGR03345 716 SNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAEL 795 (852)
T ss_pred CCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceE
Confidence 76210 134677889999999999999999998776643 1 4 3
Q ss_pred CCCHHHHHHHHHHhcC---CHHHHHHHHHHHH
Q 021660 219 DVTEGGLAALVRLCNG---DMRKALNILQSTH 247 (309)
Q Consensus 219 ~~~~~~l~~i~~~~~g---~~r~~~~~l~~~~ 247 (309)
.+++++++.|++.+.+ ..|.+.+.++...
T Consensus 796 ~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i 827 (852)
T TIGR03345 796 VYSEALVEHIVARCTEVESGARNIDAILNQTL 827 (852)
T ss_pred EECHHHHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence 6799999999999876 6888888887643
No 163
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.58 E-value=2.5e-13 Score=116.32 Aligned_cols=214 Identities=14% Similarity=0.190 Sum_probs=132.5
Q ss_pred ccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHcc-------Ccc----cc-----------c---
Q 021660 52 LADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG-------AQY----HN-----------M--- 106 (309)
Q Consensus 52 ~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~-------~~~----~~-----------~--- 106 (309)
|..++|+++++..+.-.+-.....+++|.|++|+||||+++.++..+.. ... .. .
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 82 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQE 82 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhccc
Confidence 6789999999998877666666677999999999999999999988721 000 00 0
Q ss_pred ----------EEEEe--cC--CCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc---
Q 021660 107 ----------ILELN--AS--DDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT--- 169 (309)
Q Consensus 107 ----------~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~--- 169 (309)
+..+- .+ ...+.-.+...+..-........-.++++++|+|||++.+++..+..|+++|++..
T Consensus 83 ~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~~v 162 (337)
T TIGR02030 83 PLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAASGWNVV 162 (337)
T ss_pred ccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHHHhCCeEE
Confidence 00000 00 00111122222111111001111122356899999999999999999999998531
Q ss_pred --------CCceEEEEe--cCCc-ccchhhhcce-eEEEecCCCh-HHHHHHHHHHHH----------------------
Q 021660 170 --------KNTRFALIC--NQVN-KIIPALQSRC-TRFRFAPLEP-VHVTERLKHVIE---------------------- 214 (309)
Q Consensus 170 --------~~~~~i~~~--~~~~-~l~~~l~~r~-~~i~~~~~~~-~~~~~~l~~~~~---------------------- 214 (309)
...++++++ |..+ .+.+++..|| ..+.+..+.. ++..+++++...
T Consensus 163 ~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~ 242 (337)
T TIGR02030 163 EREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAK 242 (337)
T ss_pred EECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHH
Confidence 112333333 4333 5788999999 5677777765 566666655211
Q ss_pred -------HcCCCCCHHHHHHHHHHh---cC-CHHHHHHHHHHHHhhc-----CCcCHHHHHhhhCCC
Q 021660 215 -------AEGLDVTEGGLAALVRLC---NG-DMRKALNILQSTHMAS-----QQITEEAVYLCTGNP 265 (309)
Q Consensus 215 -------~~~~~~~~~~l~~i~~~~---~g-~~r~~~~~l~~~~~~~-----~~i~~~~v~~~~~~~ 265 (309)
-..+.++++.++++++.+ +. .+|..+.+++.+...+ ..++.++|..++...
T Consensus 243 I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~~v 309 (337)
T TIGR02030 243 IVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTEVTVDDIRRVAVLA 309 (337)
T ss_pred HHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 124568888888887754 32 4788877775554332 579999998777543
No 164
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.57 E-value=1.3e-13 Score=131.16 Aligned_cols=178 Identities=20% Similarity=0.287 Sum_probs=123.4
Q ss_pred CCCccccccChHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCC
Q 021660 49 PQSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115 (309)
Q Consensus 49 p~~~~~~ig~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 115 (309)
..+++++.|.+..++.+.+++.. ..+.+++|+||||||||++++++++++ ...++.+++...
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~-----~~~~i~i~~~~i 248 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA-----GAYFISINGPEI 248 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh-----CCeEEEEecHHH
Confidence 45789999999999998887642 122349999999999999999999998 455666665421
Q ss_pred ------cchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH-----------HHHHHHHHHHHHhcC--CceEEE
Q 021660 116 ------RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKYTK--NTRFAL 176 (309)
Q Consensus 116 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~-----------~~~~~l~~~l~~~~~--~~~~i~ 176 (309)
.....+...+..... ..+.+|+|||+|.+.. ...+.|+.+++.... ...+|.
T Consensus 249 ~~~~~g~~~~~l~~lf~~a~~---------~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~ 319 (733)
T TIGR01243 249 MSKYYGESEERLREIFKEAEE---------NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIG 319 (733)
T ss_pred hcccccHHHHHHHHHHHHHHh---------cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEe
Confidence 111222333322221 1467999999988753 235667888876543 334555
Q ss_pred EecCCcccchhhhc--ce-eEEEecCCChHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCCHHHHHHH
Q 021660 177 ICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVT-EGGLAALVRLCNGDMRKALNI 242 (309)
Q Consensus 177 ~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~l~~i~~~~~g~~r~~~~~ 242 (309)
++|....+++++.+ || ..+.+..|+.++..++++.... +..+. +..++.+++.+.|....-+..
T Consensus 320 atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~--~~~l~~d~~l~~la~~t~G~~gadl~~ 387 (733)
T TIGR01243 320 ATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTR--NMPLAEDVDLDKLAEVTHGFVGADLAA 387 (733)
T ss_pred ecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhc--CCCCccccCHHHHHHhCCCCCHHHHHH
Confidence 77888889998876 66 7789999999999999986554 33342 445788999988865544443
No 165
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.57 E-value=2.1e-13 Score=116.69 Aligned_cols=216 Identities=13% Similarity=0.196 Sum_probs=136.6
Q ss_pred CccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCccc--ccEE--------------------
Q 021660 51 SLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYH--NMIL-------------------- 108 (309)
Q Consensus 51 ~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~--~~~~-------------------- 108 (309)
.|.+++||++.+..|...+.......++|.|++|+|||++++.+++.+...... ..|.
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~~~~~~~~~ 94 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVREAIQNG 94 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchhhhhhhccc
Confidence 689999999999999999888888889999999999999999998887432100 0000
Q ss_pred -------------EEec--CCC--cchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc--
Q 021660 109 -------------ELNA--SDD--RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-- 169 (309)
Q Consensus 109 -------------~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~-- 169 (309)
.+.. +.. .+.-.+...+..-........-.+++.++|++||++.+++..+..|++++++..
T Consensus 95 ~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LLeam~e~~~~ 174 (350)
T CHL00081 95 ETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLDSAASGWNT 174 (350)
T ss_pred ccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHHHHHHhCCeE
Confidence 0000 000 000001111111000000001123467899999999999999999999998521
Q ss_pred ---------CCceEEEEe--cCCc-ccchhhhcce-eEEEecCCC-hHHHHHHHHHHHH---------------------
Q 021660 170 ---------KNTRFALIC--NQVN-KIIPALQSRC-TRFRFAPLE-PVHVTERLKHVIE--------------------- 214 (309)
Q Consensus 170 ---------~~~~~i~~~--~~~~-~l~~~l~~r~-~~i~~~~~~-~~~~~~~l~~~~~--------------------- 214 (309)
...++++++ |..+ .+.+++..|+ ..+.+..++ .++..+++++...
T Consensus 175 ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (350)
T CHL00081 175 VEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRS 254 (350)
T ss_pred EeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhccccccCHH
Confidence 122344443 4333 5788899998 667777776 3556566655321
Q ss_pred --------HcCCCCCHHHHHHHHHHhc----CCHHHHHHHHHHHHhhc-----CCcCHHHHHhhhCCCC
Q 021660 215 --------AEGLDVTEGGLAALVRLCN----GDMRKALNILQSTHMAS-----QQITEEAVYLCTGNPL 266 (309)
Q Consensus 215 --------~~~~~~~~~~l~~i~~~~~----g~~r~~~~~l~~~~~~~-----~~i~~~~v~~~~~~~~ 266 (309)
-..+.++++.++++++.+. -.+|..+.+++.+...+ ..++.++|..+.....
T Consensus 255 ~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a~~vL 323 (350)
T CHL00081 255 KIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEGRTEVTPKDIFKVITLCL 323 (350)
T ss_pred HHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 1246788888888888752 25888888776554332 5799999988775443
No 166
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=99.57 E-value=1.4e-12 Score=103.79 Aligned_cols=175 Identities=16% Similarity=0.184 Sum_probs=134.3
Q ss_pred HHHHHHHHhcCCCCe-EEEECCCC-CcHHHHHHHHHHHHccCc----ccccEEEEecC-------CCcchHHHHHHHHHh
Q 021660 62 VDTIDRLTSENRLPH-LLLYGPPG-TGKTSTILAVARKLYGAQ----YHNMILELNAS-------DDRGIDVVRQQIQDF 128 (309)
Q Consensus 62 ~~~l~~~~~~~~~~~-~ll~G~~G-~GKT~l~~~l~~~~~~~~----~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 128 (309)
+..+.+.++.++..| ++|.|..+ +||..++..+++.+.+.+ ...++..+... ...+.+.+++....+
T Consensus 2 ~~~L~~~iq~~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l 81 (263)
T PRK06581 2 IERLEFNLKHNKLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFL 81 (263)
T ss_pred hHHHHHHHHcCcchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHH
Confidence 456788888888877 99999998 999999999999886642 34455555433 235677777766655
Q ss_pred hhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEecCCChHHHHHH
Q 021660 129 ASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTER 208 (309)
Q Consensus 129 ~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~ 208 (309)
...+.. .+.+|++|+++|.+..++.++|++.+|+||+++.+|++++....++++++|||+.+.|..+......++
T Consensus 82 ~~~p~~-----g~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~~~~LLpTIrSRCq~i~~~~p~~~~~~e~ 156 (263)
T PRK06581 82 SKTSAI-----SGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRCFKINVRSSILHAYNEL 156 (263)
T ss_pred hhCccc-----CCcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCChhhCchhHhhceEEEeCCCCCHHHHHHH
Confidence 443222 268999999999999999999999999999999999999999999999999999999999999888877
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHH
Q 021660 209 LKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQ 244 (309)
Q Consensus 209 l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~ 244 (309)
....+ .-..+...++.|.+...-+....+...+
T Consensus 157 ~~~~~---~p~~~~~~l~~i~~~~~~d~~~w~~~~~ 189 (263)
T PRK06581 157 YSQFI---QPIADNKTLDFINRFTTKDRELWLDFID 189 (263)
T ss_pred HHHhc---ccccccHHHHHHHHHhhhhHHHHHHHHH
Confidence 76654 2234556677777776555444444333
No 167
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.56 E-value=1.9e-13 Score=117.51 Aligned_cols=200 Identities=16% Similarity=0.154 Sum_probs=132.2
Q ss_pred cccChHHHHHHHHHHhcCC--CCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhc-
Q 021660 55 VAAHRDIVDTIDRLTSENR--LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAST- 131 (309)
Q Consensus 55 ~ig~~~~~~~l~~~~~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 131 (309)
++|+...++.+.+.+..-. ..+++|+|++||||+++|+.+...... ....++.++|..... ..+...+......
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r--~~~pfv~vnc~~~~~-~~l~~~lfG~~~g~ 77 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKR--WQGPLVKLNCAALSE-NLLDSELFGHEAGA 77 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCc--cCCCeEEEeCCCCCh-HHHHHHHhcccccc
Confidence 4677766666655554322 233999999999999999999876422 345788899886432 2222222111000
Q ss_pred ------cccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCceEEEEecCC-------cccchh
Q 021660 132 ------QSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV-------NKIIPA 187 (309)
Q Consensus 132 ------~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~~i~~~~~~-------~~l~~~ 187 (309)
....+-..++.+.|+|||++.++...+..|+.+++... .++++|++++.. ....+.
T Consensus 78 ~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~d 157 (329)
T TIGR02974 78 FTGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRAD 157 (329)
T ss_pred ccCcccccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHH
Confidence 00011123367899999999999999999999998632 345777777543 234466
Q ss_pred hhcce--eEEEecCCC--hHHHHHHHHHHHH----HcC----CCCCHHHHHHHHHHh-cCCHHHHHHHHHHHHhhc--CC
Q 021660 188 LQSRC--TRFRFAPLE--PVHVTERLKHVIE----AEG----LDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS--QQ 252 (309)
Q Consensus 188 l~~r~--~~i~~~~~~--~~~~~~~l~~~~~----~~~----~~~~~~~l~~i~~~~-~g~~r~~~~~l~~~~~~~--~~ 252 (309)
|..|+ ..|.++|+. .+++..++...+. +.+ ..+++++++.+..+. +||+|.+.+.++.++... +.
T Consensus 158 L~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~~~~~ 237 (329)
T TIGR02974 158 LLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRHGLEE 237 (329)
T ss_pred HHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCc
Confidence 77777 457777776 4566666555443 333 358999999999986 899999999999888754 33
Q ss_pred cCHHH
Q 021660 253 ITEEA 257 (309)
Q Consensus 253 i~~~~ 257 (309)
++.++
T Consensus 238 ~~~~~ 242 (329)
T TIGR02974 238 APIDE 242 (329)
T ss_pred cchhh
Confidence 44443
No 168
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.56 E-value=1.3e-13 Score=130.93 Aligned_cols=181 Identities=18% Similarity=0.261 Sum_probs=124.6
Q ss_pred ccccccChHHHHHHHHHHhcC--------CC-CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHH
Q 021660 52 LADVAAHRDIVDTIDRLTSEN--------RL-PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVR 122 (309)
Q Consensus 52 ~~~~ig~~~~~~~l~~~~~~~--------~~-~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (309)
-..++||+++++.+.+.+... ++ .+++|+||+|||||++|+.+++.+ ...++.++.+.......+.
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~~~~ 527 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKHTVS 527 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhcccHH
Confidence 456899999999988887632 12 238999999999999999999998 3344555543311111111
Q ss_pred H---------------HHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHh-----------cCCceEEE
Q 021660 123 Q---------------QIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-----------TKNTRFAL 176 (309)
Q Consensus 123 ~---------------~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~-----------~~~~~~i~ 176 (309)
. .+..... ....+||+|||++++.++.++.|++++++- -.++.+|+
T Consensus 528 ~lig~~~gyvg~~~~~~l~~~~~--------~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~ 599 (731)
T TIGR02639 528 RLIGAPPGYVGFEQGGLLTEAVR--------KHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIM 599 (731)
T ss_pred HHhcCCCCCcccchhhHHHHHHH--------hCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEE
Confidence 1 1111111 114689999999999999999999999853 13456777
Q ss_pred EecCCc-------------------------ccchhhhcce-eEEEecCCChHHHHHHHHHHHHH-------cC--CCCC
Q 021660 177 ICNQVN-------------------------KIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEA-------EG--LDVT 221 (309)
Q Consensus 177 ~~~~~~-------------------------~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~-------~~--~~~~ 221 (309)
++|... ...+.+..|+ .++.|.|++.+++.+++...+.+ .| +.++
T Consensus 600 Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~ 679 (731)
T TIGR02639 600 TSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELT 679 (731)
T ss_pred CCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeC
Confidence 775421 1346777888 78999999999999998887753 22 5678
Q ss_pred HHHHHHHHHHh---cCCHHHHHHHHHH
Q 021660 222 EGGLAALVRLC---NGDMRKALNILQS 245 (309)
Q Consensus 222 ~~~l~~i~~~~---~g~~r~~~~~l~~ 245 (309)
+++++.|++.. .-..|.+...++.
T Consensus 680 ~~a~~~La~~~~~~~~GaR~l~r~i~~ 706 (731)
T TIGR02639 680 DDAKKYLAEKGYDEEFGARPLARVIQE 706 (731)
T ss_pred HHHHHHHHHhCCCcccCchHHHHHHHH
Confidence 99999999864 1235555555544
No 169
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.54 E-value=1.3e-12 Score=115.14 Aligned_cols=204 Identities=13% Similarity=0.113 Sum_probs=122.9
Q ss_pred ccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEe--cC-CCcchHHHHHHH--H
Q 021660 52 LADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELN--AS-DDRGIDVVRQQI--Q 126 (309)
Q Consensus 52 ~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~--~ 126 (309)
-..++|++++++.+...+..+ .+++|+||||+|||++|+.+++.....+ ...+.... .. +..+...+.... .
T Consensus 19 ~~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~~~~-~F~~~~~~fttp~DLfG~l~i~~~~~~g 95 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQNAR-AFEYLMTRFSTPEEVFGPLSIQALKDEG 95 (498)
T ss_pred hhhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhcccC-cceeeeeeecCcHHhcCcHHHhhhhhcC
Confidence 356899999999999888776 5699999999999999999999874322 11222111 11 111111111110 0
Q ss_pred HhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc---------CCceE-EEEecCCcc---cchhhhcce-
Q 021660 127 DFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT---------KNTRF-ALICNQVNK---IIPALQSRC- 192 (309)
Q Consensus 127 ~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~---------~~~~~-i~~~~~~~~---l~~~l~~r~- 192 (309)
.+.......+ ....++++||+..+++..++.|+.+|++.. -..++ ++++|..+. ..+++..||
T Consensus 96 ~f~r~~~G~L---~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~DRFl 172 (498)
T PRK13531 96 RYQRLTSGYL---PEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYDRML 172 (498)
T ss_pred chhhhcCCcc---ccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHhhEE
Confidence 1100000000 023499999999999999999999997532 12234 444453332 335888998
Q ss_pred eEEEecCCCh-HHHHHHHHHHHH-----------------------HcCCCCCHHHHHHHHHHhc----------CCHHH
Q 021660 193 TRFRFAPLEP-VHVTERLKHVIE-----------------------AEGLDVTEGGLAALVRLCN----------GDMRK 238 (309)
Q Consensus 193 ~~i~~~~~~~-~~~~~~l~~~~~-----------------------~~~~~~~~~~l~~i~~~~~----------g~~r~ 238 (309)
..+.+++++. ++..+++..... -..+.+++...++|.+... -++|.
T Consensus 173 iri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~ 252 (498)
T PRK13531 173 IRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRR 252 (498)
T ss_pred EEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHH
Confidence 5678888864 555666654221 0234567777777766532 35677
Q ss_pred HHHHHHHHHhh---c--CCcCHHHHHhhh
Q 021660 239 ALNILQSTHMA---S--QQITEEAVYLCT 262 (309)
Q Consensus 239 ~~~~l~~~~~~---~--~~i~~~~v~~~~ 262 (309)
.+.++..+... . ..++++|+. ++
T Consensus 253 ~~~l~~~akA~A~l~GR~~V~p~Dv~-ll 280 (498)
T PRK13531 253 WKKAIRLLQASAFFSGRDAIAPIDLI-LL 280 (498)
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHH-Hh
Confidence 77666444332 2 568888887 44
No 170
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.53 E-value=2.6e-12 Score=112.82 Aligned_cols=206 Identities=17% Similarity=0.183 Sum_probs=143.9
Q ss_pred CccccccChHHHHHHHHHHhcCCCC--eEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHh
Q 021660 51 SLADVAAHRDIVDTIDRLTSENRLP--HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDF 128 (309)
Q Consensus 51 ~~~~~ig~~~~~~~l~~~~~~~~~~--~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (309)
...++||+...++.+.+.+..-... +++|+|++||||-.+|+++..... ...-.|+.+||... ..+.+.+.+...
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~--R~~~PFVavNcaAi-p~~l~ESELFGh 215 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASP--RAKGPFIAVNCAAI-PENLLESELFGH 215 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCc--ccCCCceeeecccC-CHHHHHHHhhcc
Confidence 5678999999999998888754333 399999999999999999987742 22457888898863 333444433322
Q ss_pred hhcccc-------ccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHh-----------cCCceEEEEecCC-------cc
Q 021660 129 ASTQSF-------SFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-----------TKNTRFALICNQV-------NK 183 (309)
Q Consensus 129 ~~~~~~-------~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~-----------~~~~~~i~~~~~~-------~~ 183 (309)
.+.... ..-..++++.|+||||..++-+.|..|+.++++. +.+++||.+|+.. ..
T Consensus 216 ekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~ 295 (464)
T COG2204 216 EKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAAGR 295 (464)
T ss_pred cccCcCCcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHHcCC
Confidence 211000 0112346789999999999999999999999963 2356788877643 23
Q ss_pred cchhhhcceeEEEecCCCh----HHHHH----HHHHHHHHcCC---CCCHHHHHHHHHH-hcCCHHHHHHHHHHHHhhc-
Q 021660 184 IIPALQSRCTRFRFAPLEP----VHVTE----RLKHVIEAEGL---DVTEGGLAALVRL-CNGDMRKALNILQSTHMAS- 250 (309)
Q Consensus 184 l~~~l~~r~~~i~~~~~~~----~~~~~----~l~~~~~~~~~---~~~~~~l~~i~~~-~~g~~r~~~~~l~~~~~~~- 250 (309)
.-+.|.-|..++.+.-|+. +++.. ++++.+++.|. .+++++++.+..+ ++||+|.+.|.++.++...
T Consensus 296 FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il~~ 375 (464)
T COG2204 296 FREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELENVVERAVILSE 375 (464)
T ss_pred cHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhcCC
Confidence 4567777876666555553 44443 45555555544 6899999999987 4899999999999888765
Q ss_pred -CCcCHHHHH
Q 021660 251 -QQITEEAVY 259 (309)
Q Consensus 251 -~~i~~~~v~ 259 (309)
..|+.+++.
T Consensus 376 ~~~i~~~~l~ 385 (464)
T COG2204 376 GPEIEVEDLP 385 (464)
T ss_pred ccccchhhcc
Confidence 346666644
No 171
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.53 E-value=5.8e-13 Score=128.24 Aligned_cols=186 Identities=19% Similarity=0.272 Sum_probs=131.2
Q ss_pred ccccccChHHHHHHHHHHhcCC--------C-CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHH
Q 021660 52 LADVAAHRDIVDTIDRLTSENR--------L-PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVR 122 (309)
Q Consensus 52 ~~~~ig~~~~~~~l~~~~~~~~--------~-~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (309)
...++||+.+++.+...+...+ + ..++|+||+|||||++|+.+++.+.+.+. .++.++++.........
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~--~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDED--AMVRIDMSEYMEKHSVA 641 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCC--cEEEEechhhcccchHH
Confidence 3568999999999988886421 2 23999999999999999999999865433 44455544321111111
Q ss_pred HH---------------HHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCceEEE
Q 021660 123 QQ---------------IQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFAL 176 (309)
Q Consensus 123 ~~---------------~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~~i~ 176 (309)
.. +..... .....+|+|||++.+.++.++.|++++++-. .++.||+
T Consensus 642 ~l~g~~~g~~g~~~~g~l~~~v~--------~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~ 713 (852)
T TIGR03346 642 RLIGAPPGYVGYEEGGQLTEAVR--------RKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIM 713 (852)
T ss_pred HhcCCCCCccCcccccHHHHHHH--------cCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEE
Confidence 11 111110 1145799999999999999999999998631 3566888
Q ss_pred EecCCc-------------------------ccchhhhcce-eEEEecCCChHHHHHHHHHHHH-------HcC--CCCC
Q 021660 177 ICNQVN-------------------------KIIPALQSRC-TRFRFAPLEPVHVTERLKHVIE-------AEG--LDVT 221 (309)
Q Consensus 177 ~~~~~~-------------------------~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~-------~~~--~~~~ 221 (309)
+||... ...+.|..|+ .++.|.|++.+++.+++...+. ..+ +.++
T Consensus 714 TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~ 793 (852)
T TIGR03346 714 TSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELS 793 (852)
T ss_pred eCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCC
Confidence 886521 1234566787 7899999999999888766554 222 5689
Q ss_pred HHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 021660 222 EGGLAALVRLC---NGDMRKALNILQSTH 247 (309)
Q Consensus 222 ~~~l~~i~~~~---~g~~r~~~~~l~~~~ 247 (309)
+++++.|+++. .++.|.+.+.++...
T Consensus 794 ~~a~~~L~~~~~~~~~gaR~L~~~i~~~i 822 (852)
T TIGR03346 794 DAALDFLAEAGYDPVYGARPLKRAIQREI 822 (852)
T ss_pred HHHHHHHHHhCCCCCCCchhHHHHHHHHH
Confidence 99999999983 588998888887665
No 172
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.53 E-value=2.6e-12 Score=108.31 Aligned_cols=179 Identities=17% Similarity=0.119 Sum_probs=114.0
Q ss_pred cCCCCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHH--
Q 021660 47 YRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQ-- 124 (309)
Q Consensus 47 ~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 124 (309)
+.|..-++++-..+....+..++..+ .+++|.||||||||++++.+++.+ +..++.+++........+...
T Consensus 39 ~~p~~d~~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l-----~~~~~rV~~~~~l~~~DliG~~~ 111 (327)
T TIGR01650 39 HVPDIDPAYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARL-----NWPCVRVNLDSHVSRIDLVGKDA 111 (327)
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHH-----CCCeEEEEecCCCChhhcCCCce
Confidence 44555556777778888788887654 459999999999999999999999 555556555443222111110
Q ss_pred --HHHh---hhcccccc-CCCCccEEEEEeCCCCCCHHHHHHHHHHHHH--------------hcCCceEEEEecCCc--
Q 021660 125 --IQDF---ASTQSFSF-GVKASVKLVLLDEADAMTKDAQFALRRVIEK--------------YTKNTRFALICNQVN-- 182 (309)
Q Consensus 125 --~~~~---~~~~~~~~-~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~--------------~~~~~~~i~~~~~~~-- 182 (309)
++.- .......+ .....+.++++||++...++.+..|..+++. +.+..++|.+.|...
T Consensus 112 ~~l~~g~~~~~f~~GpL~~A~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~G 191 (327)
T TIGR01650 112 IVLKDGKQITEFRDGILPWALQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLG 191 (327)
T ss_pred eeccCCcceeEEecCcchhHHhCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcC
Confidence 0000 00000000 0012567899999999999999999999883 113456677777632
Q ss_pred ----------ccchhhhccee-EEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 021660 183 ----------KIIPALQSRCT-RFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLC 232 (309)
Q Consensus 183 ----------~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~ 232 (309)
.+.++..+||. ++.+.-|+.++-.+++........-..+++.++.+++..
T Consensus 192 d~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~la 252 (327)
T TIGR01650 192 DTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRVA 252 (327)
T ss_pred CCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHHH
Confidence 45789999995 568999999988888876542211011345555555543
No 173
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.8e-13 Score=118.34 Aligned_cols=238 Identities=14% Similarity=0.150 Sum_probs=150.1
Q ss_pred hcCCCCccccccChHHHHHHHHHHhc------------CCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecC
Q 021660 46 KYRPQSLADVAAHRDIVDTIDRLTSE------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 113 (309)
Q Consensus 46 ~~~p~~~~~~ig~~~~~~~l~~~~~~------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 113 (309)
+.++..++++.|...+.+.+...+.- ..+..+|+.||||+|||.+++++|.+. ...++.+++.
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~-----~atff~iSas 220 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATES-----GATFFNISAS 220 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhh-----cceEeeccHH
Confidence 44667889999988888877776531 122349999999999999999999998 6666666655
Q ss_pred CCcc--hHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHH------------HHHHHHHHHH---hcCCceEEE
Q 021660 114 DDRG--IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDA------------QFALRRVIEK---YTKNTRFAL 176 (309)
Q Consensus 114 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~------------~~~l~~~l~~---~~~~~~~i~ 176 (309)
...+ .+.....+..+... +...++.|++|||+|.+..+. .++|+...-. ...+..+|.
T Consensus 221 sLtsK~~Ge~eK~vralf~v-----Ar~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvig 295 (428)
T KOG0740|consen 221 SLTSKYVGESEKLVRALFKV-----ARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIG 295 (428)
T ss_pred HhhhhccChHHHHHHHHHHH-----HHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEe
Confidence 4221 11112222222221 112268899999999885321 2333333332 223556666
Q ss_pred EecCCcccchhhhcce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHH-HHHHHHhhc----
Q 021660 177 ICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALN-ILQSTHMAS---- 250 (309)
Q Consensus 177 ~~~~~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~-~l~~~~~~~---- 250 (309)
+||.++.++.++++|| .++.++.|+.+....++++.++..+..+....++.+++.+.|--..-+. +|..++...
T Consensus 296 aTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~ 375 (428)
T KOG0740|consen 296 ATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLREL 375 (428)
T ss_pred cCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhc
Confidence 7899999999999999 6777899999999999999999988889999999999988764333222 333333211
Q ss_pred CCc-CHHHH-HhhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 021660 251 QQI-TEEAV-YLCTGNPLPKDIEQISYWLLNESFADSFKRISEMK 293 (309)
Q Consensus 251 ~~i-~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 293 (309)
... ..+.+ ..........+.......+...-...-+..+.+|.
T Consensus 376 ~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~ 420 (428)
T KOG0740|consen 376 GGTTDLEFIDADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWD 420 (428)
T ss_pred ccchhhhhcchhccCCCCcchHHHHHHhhccccCccccchhHHHh
Confidence 111 11111 12223333444445555555555555555566655
No 174
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.52 E-value=3.6e-13 Score=118.45 Aligned_cols=173 Identities=20% Similarity=0.267 Sum_probs=109.3
Q ss_pred ccccChHHHHHHHHHHhc-------C---------CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcc
Q 021660 54 DVAAHRDIVDTIDRLTSE-------N---------RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG 117 (309)
Q Consensus 54 ~~ig~~~~~~~l~~~~~~-------~---------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 117 (309)
.++||+.+++.+...+.. . ...+++|+||||||||++|+.+++.+ +..++.++++....
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l-----~~pf~~id~~~l~~ 146 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL-----DVPFAIADATTLTE 146 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh-----CCCceecchhhccc
Confidence 489999999987655421 0 12459999999999999999999987 45555555543211
Q ss_pred ----hHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHH--------------HHHHHHHHHHHh----cC-----
Q 021660 118 ----IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD--------------AQFALRRVIEKY----TK----- 170 (309)
Q Consensus 118 ----~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~--------------~~~~l~~~l~~~----~~----- 170 (309)
.......+........... .+..+.+|+|||+|.+... .++.|+++|+.. ++
T Consensus 147 ~gyvG~d~e~~l~~l~~~~~~~~-~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~ 225 (412)
T PRK05342 147 AGYVGEDVENILLKLLQAADYDV-EKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRK 225 (412)
T ss_pred CCcccchHHHHHHHHHHhccccH-HHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcC
Confidence 1112222222222111101 1225789999999999753 678999999842 10
Q ss_pred ----CceEEEEecC------------------------------C--------c--------------ccchhhhcce-e
Q 021660 171 ----NTRFALICNQ------------------------------V--------N--------------KIIPALQSRC-T 193 (309)
Q Consensus 171 ----~~~~i~~~~~------------------------------~--------~--------------~l~~~l~~r~-~ 193 (309)
...+|.|+|- . . .+.|.+..|+ .
T Consensus 226 ~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~ 305 (412)
T PRK05342 226 HPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPV 305 (412)
T ss_pred cCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCe
Confidence 1112222211 0 0 0245666777 7
Q ss_pred EEEecCCChHHHHHHHHH----H-------HHHcCC--CCCHHHHHHHHHHh
Q 021660 194 RFRFAPLEPVHVTERLKH----V-------IEAEGL--DVTEGGLAALVRLC 232 (309)
Q Consensus 194 ~i~~~~~~~~~~~~~l~~----~-------~~~~~~--~~~~~~l~~i~~~~ 232 (309)
++.|.+++.+++..++.. . +...++ .+++++++.|++.+
T Consensus 306 iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~ 357 (412)
T PRK05342 306 VATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKA 357 (412)
T ss_pred eeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhC
Confidence 789999999999998872 2 233444 57899999999974
No 175
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.52 E-value=7.9e-13 Score=120.74 Aligned_cols=207 Identities=19% Similarity=0.205 Sum_probs=136.7
Q ss_pred CCCccccccChHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHH
Q 021660 49 PQSLADVAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQ 126 (309)
Q Consensus 49 p~~~~~~ig~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (309)
...|++++|....++.+...+... ....++|+|++||||+++|+++..... .....++.++|..... +.+.+.+.
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~--r~~~pfv~inca~~~~-~~~e~elF 276 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSP--RGKKPFLALNCASIPD-DVVESELF 276 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCC--CCCCCeEEeccccCCH-HHHHHHhc
Confidence 457899999988777666555421 223399999999999999999866542 2235678888876432 22222221
Q ss_pred Hhhh-c------cccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCceEEEEecCCc------
Q 021660 127 DFAS-T------QSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQVN------ 182 (309)
Q Consensus 127 ~~~~-~------~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~~i~~~~~~~------ 182 (309)
.... . ....+-..++.+.|+|||++.++...+..|+.++++.. .++++|++|+...
T Consensus 277 G~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~ 356 (520)
T PRK10820 277 GHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQK 356 (520)
T ss_pred CCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHHc
Confidence 1110 0 00001112356789999999999999999999998631 2446777664331
Q ss_pred -ccchhhhcce--eEEEecCCCh--HHHHHH----HHHHHHHcCC---CCCHHHHHHHHHH-hcCCHHHHHHHHHHHHhh
Q 021660 183 -KIIPALQSRC--TRFRFAPLEP--VHVTER----LKHVIEAEGL---DVTEGGLAALVRL-CNGDMRKALNILQSTHMA 249 (309)
Q Consensus 183 -~l~~~l~~r~--~~i~~~~~~~--~~~~~~----l~~~~~~~~~---~~~~~~l~~i~~~-~~g~~r~~~~~l~~~~~~ 249 (309)
...+.+..|+ ..+.++|+.. +++..+ +.+.+.+.|. .+++++++.+..+ ++||+|.+.+.+..+...
T Consensus 357 g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~~ 436 (520)
T PRK10820 357 GEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALTQ 436 (520)
T ss_pred CCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 2345577775 5567777764 345544 4444445543 6899999999998 899999999999888764
Q ss_pred c--CCcCHHHH
Q 021660 250 S--QQITEEAV 258 (309)
Q Consensus 250 ~--~~i~~~~v 258 (309)
. ..|+.+++
T Consensus 437 ~~~~~i~~~~~ 447 (520)
T PRK10820 437 LEGYELRPQDI 447 (520)
T ss_pred CCCCcccHHHc
Confidence 3 45777764
No 176
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.51 E-value=2.4e-12 Score=121.17 Aligned_cols=209 Identities=13% Similarity=0.138 Sum_probs=138.5
Q ss_pred CCccccccChHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHH
Q 021660 50 QSLADVAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQD 127 (309)
Q Consensus 50 ~~~~~~ig~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (309)
..|++++|....++.+.+.+... ...+++|+|++||||+++|+.+...... ....++.++|..... +.+.+.+..
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r--~~~pfv~vnc~~~~~-~~~~~elfg 398 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESER--AAGPYIAVNCQLYPD-EALAEEFLG 398 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCc--cCCCeEEEECCCCCh-HHHHHHhcC
Confidence 36889999988887766665432 2233999999999999999999887521 245788889886432 222222211
Q ss_pred hhh-cc---ccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCceEEEEecCC-------cccc
Q 021660 128 FAS-TQ---SFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV-------NKII 185 (309)
Q Consensus 128 ~~~-~~---~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~~i~~~~~~-------~~l~ 185 (309)
... .. ....-..++++.|+|||++.++...+..|+.++++.. .++++|++|+.. ....
T Consensus 399 ~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~ 478 (638)
T PRK11388 399 SDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFS 478 (638)
T ss_pred CCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHHhcCCCh
Confidence 110 00 0001112357889999999999999999999998532 145677776543 1233
Q ss_pred hhhhcce--eEEEecCCCh--HHHHHHHHHHHHHc------CCCCCHHHHHHHHHHh-cCCHHHHHHHHHHHHhhc--CC
Q 021660 186 PALQSRC--TRFRFAPLEP--VHVTERLKHVIEAE------GLDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS--QQ 252 (309)
Q Consensus 186 ~~l~~r~--~~i~~~~~~~--~~~~~~l~~~~~~~------~~~~~~~~l~~i~~~~-~g~~r~~~~~l~~~~~~~--~~ 252 (309)
+.|..|+ ..+.++|+.. +++..++...+.+. .+.+++++++.+.++. +||+|.+.+.++.+.... ..
T Consensus 479 ~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~~~~~~ 558 (638)
T PRK11388 479 RQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSSDNGR 558 (638)
T ss_pred HHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCCCe
Confidence 4555555 4466666664 45665555555432 2468999999999987 899999999999877644 35
Q ss_pred cCHHHHHhh
Q 021660 253 ITEEAVYLC 261 (309)
Q Consensus 253 i~~~~v~~~ 261 (309)
|+.+++...
T Consensus 559 i~~~~lp~~ 567 (638)
T PRK11388 559 IRLSDLPEH 567 (638)
T ss_pred ecHHHCchh
Confidence 777666433
No 177
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.51 E-value=5.1e-13 Score=101.83 Aligned_cols=141 Identities=31% Similarity=0.393 Sum_probs=92.1
Q ss_pred ccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhccccc
Q 021660 56 AAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFS 135 (309)
Q Consensus 56 ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (309)
+|++..+..+...+......+++++||+|+|||++++.+++.+...+ ..+..+++.......................
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPG--APFLYLNASDLLEGLVVAELFGHFLVRLLFE 78 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCC--CCeEEEehhhhhhhhHHHHHhhhhhHhHHHH
Confidence 36778888888888876666799999999999999999999985333 3444444443222211111111000000000
Q ss_pred cCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHh------cCCceEEEEecCCc--ccchhhhcce-eEEEec
Q 021660 136 FGVKASVKLVLLDEADAMTKDAQFALRRVIEKY------TKNTRFALICNQVN--KIIPALQSRC-TRFRFA 198 (309)
Q Consensus 136 ~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~------~~~~~~i~~~~~~~--~l~~~l~~r~-~~i~~~ 198 (309)
......+.+|++||++.+.......+...++.. .....+|++++... .+.+.+.+|+ ..+.++
T Consensus 79 ~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 79 LAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIP 150 (151)
T ss_pred hhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEeecC
Confidence 111125789999999999777778888888875 34667788877665 6777888888 666654
No 178
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.50 E-value=1.4e-12 Score=112.38 Aligned_cols=196 Identities=18% Similarity=0.170 Sum_probs=131.6
Q ss_pred ccccccChHHHHHHHHHHhcCC--CCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhh
Q 021660 52 LADVAAHRDIVDTIDRLTSENR--LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFA 129 (309)
Q Consensus 52 ~~~~ig~~~~~~~l~~~~~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (309)
+++++|....++.+.+.+..-. ..+++|+|++||||+++|+.+.... ......++.++|..... ..+...+....
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s--~r~~~pfv~v~c~~~~~-~~~~~~lfg~~ 81 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLS--SRWQGPFISLNCAALNE-NLLDSELFGHE 81 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhC--CccCCCeEEEeCCCCCH-HHHHHHHcccc
Confidence 5678998888887776665432 2349999999999999999997653 22345788899887432 33332221111
Q ss_pred hcc-------ccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCceEEEEecCC-------ccc
Q 021660 130 STQ-------SFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV-------NKI 184 (309)
Q Consensus 130 ~~~-------~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~~i~~~~~~-------~~l 184 (309)
... ....-..++++.|+|||++.++...+..|+.+++... .++++|++++.. ...
T Consensus 82 ~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f 161 (326)
T PRK11608 82 AGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKF 161 (326)
T ss_pred ccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCc
Confidence 000 0001123357789999999999999999999998532 245777776542 234
Q ss_pred chhhhcce--eEEEecCCCh--HHHHHHHHHHH----HHcC----CCCCHHHHHHHHHHh-cCCHHHHHHHHHHHHhhc
Q 021660 185 IPALQSRC--TRFRFAPLEP--VHVTERLKHVI----EAEG----LDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS 250 (309)
Q Consensus 185 ~~~l~~r~--~~i~~~~~~~--~~~~~~l~~~~----~~~~----~~~~~~~l~~i~~~~-~g~~r~~~~~l~~~~~~~ 250 (309)
.+.|..|+ ..|.++|+.. +++..++..++ .+.+ ..+++++++.+..+. +||+|.+.+.++.++..+
T Consensus 162 ~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 162 RADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred hHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 46677776 4577777763 45655555543 3333 258999999999874 899999999999887643
No 179
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.50 E-value=1.2e-12 Score=112.94 Aligned_cols=199 Identities=17% Similarity=0.183 Sum_probs=134.7
Q ss_pred CccccccChHHHHHHHHHHhcCCC--CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHh
Q 021660 51 SLADVAAHRDIVDTIDRLTSENRL--PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDF 128 (309)
Q Consensus 51 ~~~~~ig~~~~~~~l~~~~~~~~~--~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (309)
.+.++||....++.+.+.++.-.+ .+++++|++|+||+.+|+.+....... ....++.+||......-...+.+.-.
T Consensus 76 ~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~-~~~PFI~~NCa~~~en~~~~eLFG~~ 154 (403)
T COG1221 76 ALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARR-AEAPFIAFNCAAYSENLQEAELFGHE 154 (403)
T ss_pred hhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcc-cCCCEEEEEHHHhCcCHHHHHHhccc
Confidence 578899998888877777765332 239999999999999999998443222 67889999998643322222211110
Q ss_pred h------hccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHH-----------hcCCceEEEEecCC--cccch--h
Q 021660 129 A------STQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEK-----------YTKNTRFALICNQV--NKIIP--A 187 (309)
Q Consensus 129 ~------~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~-----------~~~~~~~i~~~~~~--~~l~~--~ 187 (309)
. ......+-..++.+.|++||++.+++..+..|+.++++ .+.++++|.+|+.. ..+.+ .
T Consensus 155 kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~d 234 (403)
T COG1221 155 KGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLAGAD 234 (403)
T ss_pred cceeecccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHHHhhcc
Confidence 0 01111112345788999999999999999999999997 34567777777543 34445 6
Q ss_pred hhcce--eEEEecCCCh--HHHH----HHHHHHHHHcCCCCC---HHHHHHHHHH-hcCCHHHHHHHHHHHHhhc
Q 021660 188 LQSRC--TRFRFAPLEP--VHVT----ERLKHVIEAEGLDVT---EGGLAALVRL-CNGDMRKALNILQSTHMAS 250 (309)
Q Consensus 188 l~~r~--~~i~~~~~~~--~~~~----~~l~~~~~~~~~~~~---~~~l~~i~~~-~~g~~r~~~~~l~~~~~~~ 250 (309)
+.+|. ..|+++|+.. .|+. .+++..+++.+..+. ++++..+..+ +.||+|.+.|.++.++..+
T Consensus 235 l~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 235 LTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQA 309 (403)
T ss_pred hhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHh
Confidence 66654 6677777653 2333 345566666666543 4566666665 5899999999999988755
No 180
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.3e-12 Score=110.47 Aligned_cols=153 Identities=21% Similarity=0.278 Sum_probs=110.7
Q ss_pred CccccccChHHHHHHHHHHh--------cCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCc-----c
Q 021660 51 SLADVAAHRDIVDTIDRLTS--------ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR-----G 117 (309)
Q Consensus 51 ~~~~~ig~~~~~~~l~~~~~--------~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~-----~ 117 (309)
.++++|-++...+.+..+.. .....+++||||||+|||.+++.++... +.+|..+...+.- +
T Consensus 353 pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S-----GlDYA~mTGGDVAPlG~qa 427 (630)
T KOG0742|consen 353 PLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS-----GLDYAIMTGGDVAPLGAQA 427 (630)
T ss_pred CcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhc-----CCceehhcCCCccccchHH
Confidence 38889999999888887753 1233459999999999999999999986 6666666655432 2
Q ss_pred hHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCC---------CHHHHHHHHHHHH---HhcCCceEEEEecCCcccc
Q 021660 118 IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAM---------TKDAQFALRRVIE---KYTKNTRFALICNQVNKII 185 (309)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l---------~~~~~~~l~~~l~---~~~~~~~~i~~~~~~~~l~ 185 (309)
+..+...+.-...+ ..+-+|+|||+|.+ +.+....|-.++- +.+.+.++++.+|.+..++
T Consensus 428 VTkiH~lFDWakkS--------~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlD 499 (630)
T KOG0742|consen 428 VTKIHKLFDWAKKS--------RRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLD 499 (630)
T ss_pred HHHHHHHHHHHhhc--------ccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccchh
Confidence 23333333322211 14568999998754 3344444444444 3455677888899999999
Q ss_pred hhhhcce-eEEEecCCChHHHHHHHHHHHHHc
Q 021660 186 PALQSRC-TRFRFAPLEPVHVTERLKHVIEAE 216 (309)
Q Consensus 186 ~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~ 216 (309)
.++..|+ .+++|+-|..+|...+|..++.+.
T Consensus 500 sAV~DRide~veFpLPGeEERfkll~lYlnky 531 (630)
T KOG0742|consen 500 SAVNDRIDEVVEFPLPGEEERFKLLNLYLNKY 531 (630)
T ss_pred HHHHhhhhheeecCCCChHHHHHHHHHHHHHH
Confidence 9999999 899999999999999998888764
No 181
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=5.4e-13 Score=123.23 Aligned_cols=188 Identities=19% Similarity=0.289 Sum_probs=129.5
Q ss_pred ccccccChHHHHHHHHHHhcC---------CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHH
Q 021660 52 LADVAAHRDIVDTIDRLTSEN---------RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVR 122 (309)
Q Consensus 52 ~~~~ig~~~~~~~l~~~~~~~---------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (309)
-..++||++++..+.+.++.. +..+++|.||+|+|||.|++++|..+++.. ..++.++.+.......+.
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e--~aliR~DMSEy~EkHsVS 567 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE--QALIRIDMSEYMEKHSVS 567 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC--ccceeechHHHHHHHHHH
Confidence 356899999999998888632 123499999999999999999999995432 455555555433333333
Q ss_pred HHHHHhhhccccccC-----------CCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCceEEEEecC
Q 021660 123 QQIQDFASTQSFSFG-----------VKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQ 180 (309)
Q Consensus 123 ~~~~~~~~~~~~~~~-----------~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~~i~~~~~ 180 (309)
..+. +++...+ .+..++||++||+++.-++..+.|++++++-. .++++|+|+|-
T Consensus 568 rLIG----aPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~ 643 (786)
T COG0542 568 RLIG----APPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNA 643 (786)
T ss_pred HHhC----CCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEeccc
Confidence 3222 2221111 11257899999999999999999999999521 35678888752
Q ss_pred Cc----------------------------ccchhhhcce-eEEEecCCChHHHHHHHHHHHHH-------cCC--CCCH
Q 021660 181 VN----------------------------KIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEA-------EGL--DVTE 222 (309)
Q Consensus 181 ~~----------------------------~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~-------~~~--~~~~ 222 (309)
.. ...|.++.|+ .+|.|.+++.+.+.+|+...+.+ .++ .+++
T Consensus 644 Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~ 723 (786)
T COG0542 644 GSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSD 723 (786)
T ss_pred chHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECH
Confidence 10 1236677788 58999999999999887765553 343 5789
Q ss_pred HHHHHHHHHhc---CCHHHHHHHHHH
Q 021660 223 GGLAALVRLCN---GDMRKALNILQS 245 (309)
Q Consensus 223 ~~l~~i~~~~~---g~~r~~~~~l~~ 245 (309)
++.+.|++.+- .-.|-+.+.++.
T Consensus 724 ~a~~~l~~~gyd~~~GARpL~R~Iq~ 749 (786)
T COG0542 724 EAKDFLAEKGYDPEYGARPLRRAIQQ 749 (786)
T ss_pred HHHHHHHHhccCCCcCchHHHHHHHH
Confidence 99999999863 224545555443
No 182
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=4.4e-13 Score=120.67 Aligned_cols=198 Identities=22% Similarity=0.278 Sum_probs=132.7
Q ss_pred CCccccccChHHHHHHHHHHhc-----------CCCCe-EEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCC---
Q 021660 50 QSLADVAAHRDIVDTIDRLTSE-----------NRLPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD--- 114 (309)
Q Consensus 50 ~~~~~~ig~~~~~~~l~~~~~~-----------~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~--- 114 (309)
..|.|+.|.++++..+.+.+.- .+.|. ++++||||||||.+|++++.+. ++.++.++.++
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA-----~VPFf~iSGS~FVe 221 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-----GVPFFSISGSDFVE 221 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc-----CCCceeccchhhhh
Confidence 4789999999999888777641 23333 9999999999999999999998 66666665553
Q ss_pred ---CcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHH--------------HHHHHHHHHHHhcC--CceEE
Q 021660 115 ---DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD--------------AQFALRRVIEKYTK--NTRFA 175 (309)
Q Consensus 115 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~--------------~~~~l~~~l~~~~~--~~~~i 175 (309)
..+...++..+.+..+. .++|++|||+|.+... ..+.|+--++.... ...++
T Consensus 222 mfVGvGAsRVRdLF~qAkk~---------aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gvivi 292 (596)
T COG0465 222 MFVGVGASRVRDLFEQAKKN---------APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVI 292 (596)
T ss_pred hhcCCCcHHHHHHHHHhhcc---------CCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEE
Confidence 23455666666665433 4689999999987532 34555555554442 33455
Q ss_pred EEecCCcccchhhhc--ce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHH-HHHHHHHHhhc-
Q 021660 176 LICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKA-LNILQSTHMAS- 250 (309)
Q Consensus 176 ~~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~-~~~l~~~~~~~- 250 (309)
..||.++-++++|.+ || +.+.++.|+.....++++-+++..... ..-.+..+++.++|....- .|.+..++..+
T Consensus 293 aaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aa 371 (596)
T COG0465 293 AATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-EDVDLKKIARGTPGFSGADLANLLNEAALLAA 371 (596)
T ss_pred ecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-CcCCHHHHhhhCCCcccchHhhhHHHHHHHHH
Confidence 567888899999877 45 778899999999999999666544433 2233455888887754433 33333333322
Q ss_pred ----CCcCHHHHHhhh
Q 021660 251 ----QQITEEAVYLCT 262 (309)
Q Consensus 251 ----~~i~~~~v~~~~ 262 (309)
..|+..++..+.
T Consensus 372 r~n~~~i~~~~i~ea~ 387 (596)
T COG0465 372 RRNKKEITMRDIEEAI 387 (596)
T ss_pred HhcCeeEeccchHHHH
Confidence 346655555444
No 183
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=6.9e-13 Score=105.87 Aligned_cols=169 Identities=20% Similarity=0.326 Sum_probs=113.0
Q ss_pred CccccccChHHHHHHHHHHh------------cCC-CCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCC---
Q 021660 51 SLADVAAHRDIVDTIDRLTS------------ENR-LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD--- 114 (309)
Q Consensus 51 ~~~~~ig~~~~~~~l~~~~~------------~~~-~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~--- 114 (309)
..+++-|-+..++.+.+.+- +-+ +..+++|||||+|||.++++++.+. +..|..+....
T Consensus 169 ~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT-----~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 169 QYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT-----NATFLKLAGPQLVQ 243 (424)
T ss_pred cccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc-----cchHHHhcchHHHh
Confidence 35667777777777766652 112 3349999999999999999999987 33333332221
Q ss_pred ---CcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCC-----------HHHHHHHHHHHHHh-----cCCceEE
Q 021660 115 ---DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT-----------KDAQFALRRVIEKY-----TKNTRFA 175 (309)
Q Consensus 115 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~-----------~~~~~~l~~~l~~~-----~~~~~~i 175 (309)
..+...++..+. ++....+.+|+|||+|.+. .+.+..++++++.. .....+|
T Consensus 244 MfIGdGAkLVRDAFa---------LAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKvi 314 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFA---------LAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVI 314 (424)
T ss_pred hhhcchHHHHHHHHH---------HhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEE
Confidence 122233332222 2222357899999999875 23456677777653 2456788
Q ss_pred EEecCCcccchhhhcc--e-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 021660 176 LICNQVNKIIPALQSR--C-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG 234 (309)
Q Consensus 176 ~~~~~~~~l~~~l~~r--~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g 234 (309)
.+||..+-++|++.+. . +.|+|+.|+.+....+++-+.++-++. ++-.++.+++.+.+
T Consensus 315 AATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~-~DvNfeELaRsTdd 375 (424)
T KOG0652|consen 315 AATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVS-DDVNFEELARSTDD 375 (424)
T ss_pred eecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCC-CCCCHHHHhhcccc
Confidence 8999999999998875 4 779999999988888888776655432 33456777777654
No 184
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.50 E-value=2.2e-12 Score=123.86 Aligned_cols=191 Identities=19% Similarity=0.263 Sum_probs=127.3
Q ss_pred CccccccChHHHHHHHHHHhcC--------CC-CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHH
Q 021660 51 SLADVAAHRDIVDTIDRLTSEN--------RL-PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVV 121 (309)
Q Consensus 51 ~~~~~ig~~~~~~~l~~~~~~~--------~~-~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (309)
-...++|++.+++.+...+... ++ ..++|+||+|+|||++|+.+++.+.+.+. .++.+++.........
T Consensus 566 l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~--~~i~id~se~~~~~~~ 643 (857)
T PRK10865 566 LHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDD--AMVRIDMSEFMEKHSV 643 (857)
T ss_pred hCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCC--cEEEEEhHHhhhhhhH
Confidence 4567999999999888887632 11 24899999999999999999998854332 3455555432111111
Q ss_pred HHHHHHhhhccccccC-----------CCCccEEEEEeCCCCCCHHHHHHHHHHHHHh-----------cCCceEEEEec
Q 021660 122 RQQIQDFASTQSFSFG-----------VKASVKLVLLDEADAMTKDAQFALRRVIEKY-----------TKNTRFALICN 179 (309)
Q Consensus 122 ~~~~~~~~~~~~~~~~-----------~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~-----------~~~~~~i~~~~ 179 (309)
...+. ..+...+ ......+|+|||++.+.+..++.|++++++. ..++.+|++||
T Consensus 644 ~~LiG----~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN 719 (857)
T PRK10865 644 SRLVG----APPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSN 719 (857)
T ss_pred HHHhC----CCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCC
Confidence 11110 0000000 0113579999999999999999999999863 12445788876
Q ss_pred CCc-------------------------ccchhhhcce-eEEEecCCChHHHHHHHHHHHHH-------cC--CCCCHHH
Q 021660 180 QVN-------------------------KIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEA-------EG--LDVTEGG 224 (309)
Q Consensus 180 ~~~-------------------------~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~-------~~--~~~~~~~ 224 (309)
... ...+.|.+|+ .++.|.|++.+++..++...+.+ .+ +.+++++
T Consensus 720 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~a 799 (857)
T PRK10865 720 LGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEA 799 (857)
T ss_pred cchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHH
Confidence 521 1335788888 88999999999999987776654 23 4579999
Q ss_pred HHHHHHHhc---CCHHHHHHHHHHHH
Q 021660 225 LAALVRLCN---GDMRKALNILQSTH 247 (309)
Q Consensus 225 l~~i~~~~~---g~~r~~~~~l~~~~ 247 (309)
++.|+++.- -..|.+.+.++...
T Consensus 800 l~~L~~~gy~~~~GARpL~r~I~~~i 825 (857)
T PRK10865 800 LKLLSENGYDPVYGARPLKRAIQQQI 825 (857)
T ss_pred HHHHHHcCCCccCChHHHHHHHHHHH
Confidence 999998652 13556666655443
No 185
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.50 E-value=3.3e-12 Score=114.84 Aligned_cols=195 Identities=22% Similarity=0.260 Sum_probs=138.4
Q ss_pred cccChHHHHHHHHHHhc-----CCCCeEEEECCCCCcHHHHHHHHHHHHc-----cCcccccEEEEecCCCcchHHHHHH
Q 021660 55 VAAHRDIVDTIDRLTSE-----NRLPHLLLYGPPGTGKTSTILAVARKLY-----GAQYHNMILELNASDDRGIDVVRQQ 124 (309)
Q Consensus 55 ~ig~~~~~~~l~~~~~~-----~~~~~~ll~G~~G~GKT~l~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (309)
+-+++.....+...+.. +.+..++++|-||+|||.+++.+.+.+. .+-..+.|+++++-...+...+...
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~ 477 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEK 477 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHH
Confidence 34455555555555432 2222499999999999999999999875 2345678899998776665555555
Q ss_pred HHHhhhcccc--------------ccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc---CCceEEEEecCCccc---
Q 021660 125 IQDFASTQSF--------------SFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT---KNTRFALICNQVNKI--- 184 (309)
Q Consensus 125 ~~~~~~~~~~--------------~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~---~~~~~i~~~~~~~~l--- 184 (309)
+......... .-.......||+|||.|.|....+..|+++++.+. ...++|.++|..+..
T Consensus 478 I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~ 557 (767)
T KOG1514|consen 478 IWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERL 557 (767)
T ss_pred HHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCHHHH
Confidence 5433221110 11234568899999999999888899999999754 344555566655432
Q ss_pred -chhhhcce--eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh---cCCHHHHHHHHHHHHhhc
Q 021660 185 -IPALQSRC--TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLC---NGDMRKALNILQSTHMAS 250 (309)
Q Consensus 185 -~~~l~~r~--~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~---~g~~r~~~~~l~~~~~~~ 250 (309)
....-+|. .++.|.|++..++.+++..+++.. ..+++++++.+++.. .||.|.+++.|+.+.-.+
T Consensus 558 l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~RA~Eia 628 (767)
T KOG1514|consen 558 LMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRRAAEIA 628 (767)
T ss_pred hccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 22334554 889999999999999999988765 357888888888764 699999999999888654
No 186
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.49 E-value=2e-12 Score=117.22 Aligned_cols=208 Identities=17% Similarity=0.184 Sum_probs=139.7
Q ss_pred CCccccccChHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHH
Q 021660 50 QSLADVAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQD 127 (309)
Q Consensus 50 ~~~~~~ig~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (309)
..|++++|....++.+.+.+..- ...+++|+|++||||+.+|+.+..... .....++.++|..... ..+.+.+..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~--r~~~pfv~inC~~l~e-~lleseLFG 285 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSG--RRDFPFVAINCGAIAE-SLLEAELFG 285 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcC--cCCCCEEEeccccCCh-hHHHHHhcC
Confidence 46888999999888887776532 223499999999999999999987642 2356788889886432 223322221
Q ss_pred hhhc--------cccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCceEEEEecCCc------
Q 021660 128 FAST--------QSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQVN------ 182 (309)
Q Consensus 128 ~~~~--------~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~~i~~~~~~~------ 182 (309)
.... ....+-..++.+.|+|||++.|+...+..|+.++++.. .++++|++++...
T Consensus 286 ~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~ 365 (526)
T TIGR02329 286 YEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQ 365 (526)
T ss_pred CcccccccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHhhh
Confidence 1110 00111122467899999999999999999999998532 2446777775432
Q ss_pred -ccchhhhcce--eEEEecCCCh--HHHHHHHHHHHH----HcCCCCCHHHHHH-------HHHH-hcCCHHHHHHHHHH
Q 021660 183 -KIIPALQSRC--TRFRFAPLEP--VHVTERLKHVIE----AEGLDVTEGGLAA-------LVRL-CNGDMRKALNILQS 245 (309)
Q Consensus 183 -~l~~~l~~r~--~~i~~~~~~~--~~~~~~l~~~~~----~~~~~~~~~~l~~-------i~~~-~~g~~r~~~~~l~~ 245 (309)
.+.+.+..|+ ..+.++|+.. +++..++..++. ..++.+++++++. +..+ ++||+|.+.+.++.
T Consensus 366 g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier 445 (526)
T TIGR02329 366 GRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVER 445 (526)
T ss_pred cchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 2334555565 5577777764 466655555544 3466789999887 5554 58999999999998
Q ss_pred HHhhc-----CCcCHHHHHh
Q 021660 246 THMAS-----QQITEEAVYL 260 (309)
Q Consensus 246 ~~~~~-----~~i~~~~v~~ 260 (309)
++... ..|+.+++..
T Consensus 446 ~~i~~~~~~~~~I~~~~l~~ 465 (526)
T TIGR02329 446 LALELSAMPAGALTPDVLRA 465 (526)
T ss_pred HHHhcccCCCCccCHHHhhh
Confidence 87642 4578877643
No 187
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.49 E-value=1.2e-12 Score=125.79 Aligned_cols=184 Identities=22% Similarity=0.293 Sum_probs=124.8
Q ss_pred ccccccChHHHHHHHHHHhcC--------CC-CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHH
Q 021660 52 LADVAAHRDIVDTIDRLTSEN--------RL-PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVR 122 (309)
Q Consensus 52 ~~~~ig~~~~~~~l~~~~~~~--------~~-~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (309)
-..++||+++++.+...+... ++ ..++|+||+|+|||++|+.+++.+.+.. ..++.++.+.......+.
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~--~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSE--DAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCc--cceEEEEchhccccccHH
Confidence 356899999999998887532 11 2389999999999999999999986543 234444443211111111
Q ss_pred HH---------------HHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHh-----------cCCceEEE
Q 021660 123 QQ---------------IQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-----------TKNTRFAL 176 (309)
Q Consensus 123 ~~---------------~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~-----------~~~~~~i~ 176 (309)
.. +..... ....+||+|||++++.++.++.|++++++- ..++.||+
T Consensus 586 ~l~g~~~gyvg~~~~~~l~~~~~--------~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~ 657 (821)
T CHL00095 586 KLIGSPPGYVGYNEGGQLTEAVR--------KKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIM 657 (821)
T ss_pred HhcCCCCcccCcCccchHHHHHH--------hCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEE
Confidence 11 111111 114589999999999999999999999962 24677888
Q ss_pred EecCCcc-------------------------------------cchhhhcce-eEEEecCCChHHHHHHHHHHHHH---
Q 021660 177 ICNQVNK-------------------------------------IIPALQSRC-TRFRFAPLEPVHVTERLKHVIEA--- 215 (309)
Q Consensus 177 ~~~~~~~-------------------------------------l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~--- 215 (309)
|+|.... ..|.+.+|+ .++.|.|++.+++.+++...+.+
T Consensus 658 Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~ 737 (821)
T CHL00095 658 TSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFK 737 (821)
T ss_pred eCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 8753210 124677888 88999999999999998776653
Q ss_pred ----cC--CCCCHHHHHHHHHHh-c--CCHHHHHHHHHH
Q 021660 216 ----EG--LDVTEGGLAALVRLC-N--GDMRKALNILQS 245 (309)
Q Consensus 216 ----~~--~~~~~~~l~~i~~~~-~--g~~r~~~~~l~~ 245 (309)
.+ +.+++++.+.|++.. . .-.|.+...++.
T Consensus 738 rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~ 776 (821)
T CHL00095 738 RLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMR 776 (821)
T ss_pred HHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHH
Confidence 23 467899999999974 1 124544444443
No 188
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2e-12 Score=102.63 Aligned_cols=175 Identities=23% Similarity=0.336 Sum_probs=116.8
Q ss_pred CCCcccccc-ChHHHHHHHHHHh-------------cCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCC
Q 021660 49 PQSLADVAA-HRDIVDTIDRLTS-------------ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (309)
Q Consensus 49 p~~~~~~ig-~~~~~~~l~~~~~-------------~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 114 (309)
|.+--+.+| -+..++.+++.+. -.++..+++|||||+|||.+++++++.. ...|+.++.+.
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-----~c~firvsgse 216 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIRVSGSE 216 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-----ceEEEEechHH
Confidence 334344455 4555666666654 2244559999999999999999999986 56666666553
Q ss_pred C------cchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCC-----------HHHHHHHHHHHHHh-----cCCc
Q 021660 115 D------RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT-----------KDAQFALRRVIEKY-----TKNT 172 (309)
Q Consensus 115 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~-----------~~~~~~l~~~l~~~-----~~~~ 172 (309)
. .+...+++.+- .+ ....+++|+.||+|.+. .+.+..++++++.. ..+.
T Consensus 217 lvqk~igegsrmvrelfv-ma--------rehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkni 287 (404)
T KOG0728|consen 217 LVQKYIGEGSRMVRELFV-MA--------REHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNI 287 (404)
T ss_pred HHHHHhhhhHHHHHHHHH-HH--------HhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccce
Confidence 2 12222222211 11 12257899999999885 24466677777643 4577
Q ss_pred eEEEEecCCcccchhhhcce---eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHH
Q 021660 173 RFALICNQVNKIIPALQSRC---TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRK 238 (309)
Q Consensus 173 ~~i~~~~~~~~l~~~l~~r~---~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~ 238 (309)
.+|++||..+-+++++.+.. ..|+|+||+.+...++++-..++-+..- --.+..|++...|-.+.
T Consensus 288 kvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~r-gi~l~kiaekm~gasga 355 (404)
T KOG0728|consen 288 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTR-GINLRKIAEKMPGASGA 355 (404)
T ss_pred EEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhc-ccCHHHHHHhCCCCccc
Confidence 89999999999999998854 6699999999999999987766543211 11256777777664443
No 189
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.8e-12 Score=116.46 Aligned_cols=182 Identities=19% Similarity=0.198 Sum_probs=126.5
Q ss_pred CccccccChHHHHHHHHHHhcC------------C-CCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcc
Q 021660 51 SLADVAAHRDIVDTIDRLTSEN------------R-LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG 117 (309)
Q Consensus 51 ~~~~~ig~~~~~~~l~~~~~~~------------~-~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 117 (309)
.++++-|-.++++.+.+.+... + ...+++|||||||||.+|.+++... +..++.+.......
T Consensus 665 ~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~-----~~~fisvKGPElL~ 739 (952)
T KOG0735|consen 665 RWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS-----NLRFISVKGPELLS 739 (952)
T ss_pred CceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC-----CeeEEEecCHHHHH
Confidence 4678888888888777776532 1 1239999999999999999999986 77788776654211
Q ss_pred --hHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH-----------HHHHHHHHHHHHhc--CCceEEEEecCCc
Q 021660 118 --IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKYT--KNTRFALICNQVN 182 (309)
Q Consensus 118 --~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~-----------~~~~~l~~~l~~~~--~~~~~i~~~~~~~ 182 (309)
+..-.+.++...... ..+.++++++||+|.+.+ ...+.|+.-|+... ..+.++.+|+.++
T Consensus 740 KyIGaSEq~vR~lF~rA-----~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpd 814 (952)
T KOG0735|consen 740 KYIGASEQNVRDLFERA-----QSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPD 814 (952)
T ss_pred HHhcccHHHHHHHHHHh-----hccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCcc
Confidence 111122333332221 122789999999999864 34678888777543 2445555678888
Q ss_pred ccchhhhcc--e-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHH
Q 021660 183 KIIPALQSR--C-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNIL 243 (309)
Q Consensus 183 ~l~~~l~~r--~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l 243 (309)
.+++++.+. + ..+.++.|+..+..++++........ -++..++-++..+.|--+.-+..|
T Consensus 815 liDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~-~~~vdl~~~a~~T~g~tgADlq~l 877 (952)
T KOG0735|consen 815 LIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLK-DTDVDLECLAQKTDGFTGADLQSL 877 (952)
T ss_pred ccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCC-ccccchHHHhhhcCCCchhhHHHH
Confidence 999999875 4 66899999999999999887765443 245667888988877555444433
No 190
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.48 E-value=2.4e-12 Score=116.58 Aligned_cols=209 Identities=15% Similarity=0.188 Sum_probs=137.0
Q ss_pred CCccccccChHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHHc------cCcccccEEEEecCCCcchHHH
Q 021660 50 QSLADVAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLY------GAQYHNMILELNASDDRGIDVV 121 (309)
Q Consensus 50 ~~~~~~ig~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 121 (309)
..|++++|+...++.+.+.+..- ...+++|+|++||||+.+|+.+...+. .......|+.++|..... ..+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e-~ll 294 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAE-SLL 294 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCCh-hhH
Confidence 35888999999888887776532 223499999999999999999988721 122456789999986432 233
Q ss_pred HHHHHHhhhc--------cccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCceEEEEecCCc
Q 021660 122 RQQIQDFAST--------QSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQVN 182 (309)
Q Consensus 122 ~~~~~~~~~~--------~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~~i~~~~~~~ 182 (309)
.+.+...... ....+-..++++.|+|||++.++...+..|+.++++.. .++++|++|+..-
T Consensus 295 eseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L 374 (538)
T PRK15424 295 EAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDL 374 (538)
T ss_pred HHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEecCCCH
Confidence 3322221110 00111123467899999999999999999999998632 2457777775432
Q ss_pred -------ccchhhhcce--eEEEecCCCh--HHHHHHHHHHHHH----cCCCCCHHHHH-------HHHHH-hcCCHHHH
Q 021660 183 -------KIIPALQSRC--TRFRFAPLEP--VHVTERLKHVIEA----EGLDVTEGGLA-------ALVRL-CNGDMRKA 239 (309)
Q Consensus 183 -------~l~~~l~~r~--~~i~~~~~~~--~~~~~~l~~~~~~----~~~~~~~~~l~-------~i~~~-~~g~~r~~ 239 (309)
...+.+..|+ ..+.++|+.. +++..++...+++ .+..++++++. .+..+ ++||+|.+
T Consensus 375 ~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL 454 (538)
T PRK15424 375 EEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVREL 454 (538)
T ss_pred HHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHhCCCCchHHHH
Confidence 1233455565 4566666653 5666666665554 56678887763 33333 58999999
Q ss_pred HHHHHHHHhhc-----CCcCHHHHH
Q 021660 240 LNILQSTHMAS-----QQITEEAVY 259 (309)
Q Consensus 240 ~~~l~~~~~~~-----~~i~~~~v~ 259 (309)
.+.++.++... ..++.+++.
T Consensus 455 ~nvier~~i~~~~~~~~~i~~~~l~ 479 (538)
T PRK15424 455 RNLMERLALFLSVEPTPDLTPQFLQ 479 (538)
T ss_pred HHHHHHHHHhcCCCCcCccCHHHhh
Confidence 99999887653 246655543
No 191
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.48 E-value=6.4e-12 Score=102.27 Aligned_cols=122 Identities=13% Similarity=0.204 Sum_probs=99.6
Q ss_pred ccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEec------------CCcccchhhhcceeEEEecCCChHHHHHH
Q 021660 141 SVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN------------QVNKIIPALQSRCTRFRFAPLEPVHVTER 208 (309)
Q Consensus 141 ~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~------------~~~~l~~~l~~r~~~i~~~~~~~~~~~~~ 208 (309)
-+.+|+|||+|.|.-++..+|...+++-- .+++|+++| .+..++-.+..|..++...|++.++++++
T Consensus 288 vpGVLFIDEvHMLDIEcFsFlNrAlE~d~-~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~~I 366 (454)
T KOG2680|consen 288 VPGVLFIDEVHMLDIECFSFLNRALENDM-APIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIKKI 366 (454)
T ss_pred ccceEEEeeehhhhhHHHHHHHHHhhhcc-CcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcHHHHHHH
Confidence 47799999999999999999999998643 445666664 34467888999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHh-cCCHHHHHHHHHHHHhhc-----CCcCHHHHHhhhC
Q 021660 209 LKHVIEAEGLDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS-----QQITEEAVYLCTG 263 (309)
Q Consensus 209 l~~~~~~~~~~~~~~~l~~i~~~~-~g~~r~~~~~l~~~~~~~-----~~i~~~~v~~~~~ 263 (309)
|+.+|..+++.+++++++.+.... .-.+|.+++++......+ ..+..++|..+..
T Consensus 367 L~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y~ 427 (454)
T KOG2680|consen 367 LRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVYR 427 (454)
T ss_pred HHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHHHH
Confidence 999999999999999999999876 457999999987665533 4566677766543
No 192
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=3.3e-13 Score=109.29 Aligned_cols=153 Identities=22% Similarity=0.338 Sum_probs=108.2
Q ss_pred hhcCCCCccccccChHHHHHHHHHHhcC------------C-CCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEe
Q 021660 45 EKYRPQSLADVAAHRDIVDTIDRLTSEN------------R-LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELN 111 (309)
Q Consensus 45 ~~~~p~~~~~~ig~~~~~~~l~~~~~~~------------~-~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 111 (309)
++....++.++-|-+..++.+++.+.-. + +..+++||+||+|||.||+++|++. +..|..+.
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT-----SATFlRvv 251 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT-----SATFLRVV 251 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc-----chhhhhhh
Confidence 3333446778888888899998887521 2 3349999999999999999999987 44444444
Q ss_pred cCC------CcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH-----------HHHHHHHHHHHHh-----c
Q 021660 112 ASD------DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKY-----T 169 (309)
Q Consensus 112 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~-----------~~~~~l~~~l~~~-----~ 169 (309)
.+. ..+...+++.+.-..+ ..+++++|||+|.+.. +.+..++++++.. .
T Consensus 252 GseLiQkylGdGpklvRqlF~vA~e---------~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsr 322 (440)
T KOG0726|consen 252 GSELIQKYLGDGPKLVRELFRVAEE---------HAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR 322 (440)
T ss_pred hHHHHHHHhccchHHHHHHHHHHHh---------cCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCcccc
Confidence 332 1233334443332222 2478999999998852 3456677777754 3
Q ss_pred CCceEEEEecCCcccchhhhcce---eEEEecCCChHHHHHHHHH
Q 021660 170 KNTRFALICNQVNKIIPALQSRC---TRFRFAPLEPVHVTERLKH 211 (309)
Q Consensus 170 ~~~~~i~~~~~~~~l~~~l~~r~---~~i~~~~~~~~~~~~~l~~ 211 (309)
.++.+|++||..+.+++++.+.. ..|.|+.|+....+.++.-
T Consensus 323 gDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~I 367 (440)
T KOG0726|consen 323 GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQI 367 (440)
T ss_pred CCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEE
Confidence 46789999999999999998864 6699999988877777653
No 193
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=1.1e-12 Score=112.70 Aligned_cols=197 Identities=19% Similarity=0.270 Sum_probs=138.9
Q ss_pred CccccccChHHHHHHHHHHhc----CCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHH-HHHH
Q 021660 51 SLADVAAHRDIVDTIDRLTSE----NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVV-RQQI 125 (309)
Q Consensus 51 ~~~~~ig~~~~~~~l~~~~~~----~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 125 (309)
....+.|++..++.++.++.. ...+.++++|.||+|||.+...+...+.++......+.++|........+ ....
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 346688999999988888764 34455999999999999999999999888877778888888863322222 2222
Q ss_pred HHhhh---ccccc----------cCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHh---cCCceEEEEecCCc---ccch
Q 021660 126 QDFAS---TQSFS----------FGVKASVKLVLLDEADAMTKDAQFALRRVIEKY---TKNTRFALICNQVN---KIIP 186 (309)
Q Consensus 126 ~~~~~---~~~~~----------~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~---~~~~~~i~~~~~~~---~l~~ 186 (309)
..+.+ ..... +......-++++||+|.+....+..|+.+++.+ ..+.++|.++|..+ ...+
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~Lp 307 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLP 307 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhh
Confidence 22211 00000 011124678999999999877777777777754 34455666677654 4445
Q ss_pred hhhcce----eEEEecCCChHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 021660 187 ALQSRC----TRFRFAPLEPVHVTERLKHVIEAEGLD-VTEGGLAALVRLC---NGDMRKALNILQSTH 247 (309)
Q Consensus 187 ~l~~r~----~~i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~l~~i~~~~---~g~~r~~~~~l~~~~ 247 (309)
.|..+. .++.|+|++.+++.+|++.++..+... +-+.+++..|+.. .||+|.+++.++.+.
T Consensus 308 rL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 308 RLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred hhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 555532 779999999999999999999877543 3455777777764 699999999998544
No 194
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.46 E-value=1.9e-11 Score=111.69 Aligned_cols=197 Identities=15% Similarity=0.137 Sum_probs=133.2
Q ss_pred CccccccChHHHHHHHHHHhcCC--CCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHh
Q 021660 51 SLADVAAHRDIVDTIDRLTSENR--LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDF 128 (309)
Q Consensus 51 ~~~~~ig~~~~~~~l~~~~~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (309)
.+.+++|+...++.+.+.+.... ..+++|+|++||||+++|+.+...... ....++.++|..... ..+.+.+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r--~~~p~v~v~c~~~~~-~~~e~~lfG~ 261 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPR--ADKPLVYLNCAALPE-SLAESELFGH 261 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCc--CCCCeEEEEcccCCh-HHHHHHhcCc
Confidence 46789999999888777766432 233999999999999999999887532 345788888876432 2222222111
Q ss_pred hhcc-------ccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCceEEEEecCCc-------c
Q 021660 129 ASTQ-------SFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQVN-------K 183 (309)
Q Consensus 129 ~~~~-------~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~~i~~~~~~~-------~ 183 (309)
.... ....-..++++.|+|||++.++.+.+..|+.++++.. .++++|++++... .
T Consensus 262 ~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~ 341 (509)
T PRK05022 262 VKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGR 341 (509)
T ss_pred cccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHHHcCC
Confidence 0000 0001112357789999999999999999999998532 2567888876432 3
Q ss_pred cchhhhcce--eEEEecCCCh--HHHHHHHHHHH----HHcC---CCCCHHHHHHHHHHh-cCCHHHHHHHHHHHHhhc
Q 021660 184 IIPALQSRC--TRFRFAPLEP--VHVTERLKHVI----EAEG---LDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS 250 (309)
Q Consensus 184 l~~~l~~r~--~~i~~~~~~~--~~~~~~l~~~~----~~~~---~~~~~~~l~~i~~~~-~g~~r~~~~~l~~~~~~~ 250 (309)
+.+.+..|+ ..|.++|+.. +++..++...+ .+.+ ..+++++++.+..+. +||+|.+.+.++.++..+
T Consensus 342 f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~ 420 (509)
T PRK05022 342 FRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLA 420 (509)
T ss_pred ccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhc
Confidence 445666666 4466666653 45555444433 3333 568999999999874 899999999999888654
No 195
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=7.8e-12 Score=111.81 Aligned_cols=197 Identities=19% Similarity=0.242 Sum_probs=137.6
Q ss_pred cccccChHHHHHHHHHHh------------cC-CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCC----
Q 021660 53 ADVAAHRDIVDTIDRLTS------------EN-RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD---- 115 (309)
Q Consensus 53 ~~~ig~~~~~~~l~~~~~------------~~-~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~---- 115 (309)
.++.|....+..+...+. +. .+..+++|||||+|||.++++++++. +..++.+++...
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~-----~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEY-----GAFLFLINGPELISKF 258 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHh-----CceeEecccHHHHHhc
Confidence 466666666666665543 11 22349999999999999999999997 566666665521
Q ss_pred --cchHHHHHHHHHhhhccccccCCCCc-cEEEEEeCCCCCCH----------HHHHHHHHHHHHhc--CCceEEEEecC
Q 021660 116 --RGIDVVRQQIQDFASTQSFSFGVKAS-VKLVLLDEADAMTK----------DAQFALRRVIEKYT--KNTRFALICNQ 180 (309)
Q Consensus 116 --~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lliiDe~~~l~~----------~~~~~l~~~l~~~~--~~~~~i~~~~~ 180 (309)
.....++..+...... . +.+++|||++.+.+ .....|+.+++... ...++|.++|.
T Consensus 259 ~gEte~~LR~~f~~a~k~---------~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnr 329 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKF---------QVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNR 329 (693)
T ss_pred ccchHHHHHHHHHHHhcc---------CCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCC
Confidence 2223334444443322 3 78999999999874 23567889998776 56667777899
Q ss_pred Ccccchhhhc-ce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHH-HHHHhhcCCcCHHH
Q 021660 181 VNKIIPALQS-RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNIL-QSTHMASQQITEEA 257 (309)
Q Consensus 181 ~~~l~~~l~~-r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l-~~~~~~~~~i~~~~ 257 (309)
+..+++++++ || ..+.+.-|+..+..++++...+..+.. ++..+..++..+.|..+.-+..+ ..+...+..-+.++
T Consensus 330 p~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~~~~~ 408 (693)
T KOG0730|consen 330 PDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVGADLAALCREASLQATRRTLEI 408 (693)
T ss_pred ccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchhHHHHHHHHHHHHHHHhhhhHHH
Confidence 9999999996 88 889999999999999999999887766 67889999999998776555444 33332221114445
Q ss_pred HHhhhCC
Q 021660 258 VYLCTGN 264 (309)
Q Consensus 258 v~~~~~~ 264 (309)
+..+...
T Consensus 409 ~~~A~~~ 415 (693)
T KOG0730|consen 409 FQEALMG 415 (693)
T ss_pred HHHHHhc
Confidence 5444443
No 196
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.44 E-value=3.1e-11 Score=99.99 Aligned_cols=207 Identities=15% Similarity=0.157 Sum_probs=131.9
Q ss_pred cccChHH---HHHHHHHHh---cCCCCeEEEECCCCCcHHHHHHHHHHHHccCc----ccccEEEEecCCCcchHHHHHH
Q 021660 55 VAAHRDI---VDTIDRLTS---ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ----YHNMILELNASDDRGIDVVRQQ 124 (309)
Q Consensus 55 ~ig~~~~---~~~l~~~~~---~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 124 (309)
-||.+.+ ++.+..++. ..++++++|+|++|.|||++++.+.+...... ....++.+......+...+...
T Consensus 36 WIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~ 115 (302)
T PF05621_consen 36 WIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSA 115 (302)
T ss_pred eecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHH
Confidence 4555444 445555554 44678899999999999999999998764221 1234455555444443444433
Q ss_pred HHHhhhccccccC-------------CCCccEEEEEeCCCCCC---HHHHHHHHHHHHHhcC--CceEEEEecC----Cc
Q 021660 125 IQDFASTQSFSFG-------------VKASVKLVLLDEADAMT---KDAQFALRRVIEKYTK--NTRFALICNQ----VN 182 (309)
Q Consensus 125 ~~~~~~~~~~~~~-------------~~~~~~lliiDe~~~l~---~~~~~~l~~~l~~~~~--~~~~i~~~~~----~~ 182 (309)
+......+...-. ..-+.++|||||+|.+. ...+..+++++..... ...+|+++.. .-
T Consensus 116 IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al 195 (302)
T PF05621_consen 116 ILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRAL 195 (302)
T ss_pred HHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHh
Confidence 3333322221000 11267899999999874 2335666666665543 3445555432 12
Q ss_pred ccchhhhcceeEEEecCCChH-HHHHHHHHHHHHcCC----C-CCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-----C
Q 021660 183 KIIPALQSRCTRFRFAPLEPV-HVTERLKHVIEAEGL----D-VTEGGLAALVRLCNGDMRKALNILQSTHMAS-----Q 251 (309)
Q Consensus 183 ~l~~~l~~r~~~i~~~~~~~~-~~~~~l~~~~~~~~~----~-~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~-----~ 251 (309)
..++++.+||..+.++++..+ +...++...-...-. . -+++....|.+.++|.++.+.+++..++..+ +
T Consensus 196 ~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll~~aA~~AI~sG~E 275 (302)
T PF05621_consen 196 RTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLLNAAAIAAIRSGEE 275 (302)
T ss_pred ccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhcCCc
Confidence 456899999999999998864 566666554433211 2 3567779999999999999999998887654 5
Q ss_pred CcCHHHHHhh
Q 021660 252 QITEEAVYLC 261 (309)
Q Consensus 252 ~i~~~~v~~~ 261 (309)
.||.+.+..+
T Consensus 276 ~It~~~l~~~ 285 (302)
T PF05621_consen 276 RITREILDKI 285 (302)
T ss_pred eecHHHHhhC
Confidence 7888887654
No 197
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.44 E-value=2.9e-11 Score=95.55 Aligned_cols=192 Identities=19% Similarity=0.231 Sum_probs=132.9
Q ss_pred hhhcCCCCccccccChHHHHHHH----HHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchH
Q 021660 44 VEKYRPQSLADVAAHRDIVDTID----RLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 119 (309)
Q Consensus 44 ~~~~~p~~~~~~ig~~~~~~~l~----~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (309)
...+.|..+.+++|-+...+.+. +.+.+....++|+||..|+|||++++++..+....+.. .++++..+.....
T Consensus 51 v~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr--LVEV~k~dl~~Lp 128 (287)
T COG2607 51 VPDPDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR--LVEVDKEDLATLP 128 (287)
T ss_pred CCCCCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe--EEEEcHHHHhhHH
Confidence 34455667889999777666554 44556666669999999999999999999998666554 7787777655555
Q ss_pred HHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH-HHHHHHHHHHH----HhcCCceEEEEecCCcccch--------
Q 021660 120 VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-DAQFALRRVIE----KYTKNTRFALICNQVNKIIP-------- 186 (309)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~-~~~~~l~~~l~----~~~~~~~~i~~~~~~~~l~~-------- 186 (309)
.+...++... .+-||+.|+.-.=.. ..-..|..+++ ..|.++.|-.|+|....+++
T Consensus 129 ~l~~~Lr~~~-----------~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~ 197 (287)
T COG2607 129 DLVELLRARP-----------EKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGS 197 (287)
T ss_pred HHHHHHhcCC-----------ceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhCCCc
Confidence 5544444322 567899998654332 33455666666 34556666666664432221
Q ss_pred --------------hhhcce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-----hcCCHHHHHHHHHHH
Q 021660 187 --------------ALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRL-----CNGDMRKALNILQST 246 (309)
Q Consensus 187 --------------~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~-----~~g~~r~~~~~l~~~ 246 (309)
++-.|| ..+.|.|++.++...++..+++..++.++++.+..=+-. .+.+-|.+...++.+
T Consensus 198 ~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~RSGR~A~QF~~~~ 277 (287)
T COG2607 198 TGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGRSGRVAWQFIRDL 277 (287)
T ss_pred ccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCccHhHHHHHHHH
Confidence 234577 789999999999999999999999999988766554433 355677777777666
Q ss_pred Hh
Q 021660 247 HM 248 (309)
Q Consensus 247 ~~ 248 (309)
+.
T Consensus 278 ~g 279 (287)
T COG2607 278 AG 279 (287)
T ss_pred Hh
Confidence 54
No 198
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.44 E-value=5.7e-12 Score=117.60 Aligned_cols=212 Identities=14% Similarity=0.158 Sum_probs=132.6
Q ss_pred ccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHc-----------cCc------------------
Q 021660 52 LADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY-----------GAQ------------------ 102 (309)
Q Consensus 52 ~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~-----------~~~------------------ 102 (309)
|.+++||+.++..+...+......+++|.|++|+|||++++.+++.+. |..
T Consensus 3 f~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~ 82 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSE 82 (633)
T ss_pred cchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccc
Confidence 678999999999888888777667799999999999999999998872 000
Q ss_pred -ccccEEEEecCCC----cchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHh---------
Q 021660 103 -YHNMILELNASDD----RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY--------- 168 (309)
Q Consensus 103 -~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~--------- 168 (309)
....|+.+..... .+...+...+..-........-..++.++|+|||++.+++..++.|+.+|+..
T Consensus 83 ~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~r~g~ 162 (633)
T TIGR02442 83 QRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREGL 162 (633)
T ss_pred cCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEEECCc
Confidence 0123333322211 01111122121100000011112235679999999999999999999999853
Q ss_pred ----cCCceEEEEecCC-cccchhhhcce-eEEEecCCC-hHHHHHHHHHHHH---------------------------
Q 021660 169 ----TKNTRFALICNQV-NKIIPALQSRC-TRFRFAPLE-PVHVTERLKHVIE--------------------------- 214 (309)
Q Consensus 169 ----~~~~~~i~~~~~~-~~l~~~l~~r~-~~i~~~~~~-~~~~~~~l~~~~~--------------------------- 214 (309)
+....+|.++|.. ..+.+.|..|+ ..+.+..+. .++..+++.+...
T Consensus 163 ~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar 242 (633)
T TIGR02442 163 SVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARAR 242 (633)
T ss_pred eeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHH
Confidence 2235566665643 35678899998 556666554 3444444433111
Q ss_pred --HcCCCCCHHHHHHHHHHhc--C--CHHHHHHHHHHHHhhc-----CCcCHHHHHhhhC
Q 021660 215 --AEGLDVTEGGLAALVRLCN--G--DMRKALNILQSTHMAS-----QQITEEAVYLCTG 263 (309)
Q Consensus 215 --~~~~~~~~~~l~~i~~~~~--g--~~r~~~~~l~~~~~~~-----~~i~~~~v~~~~~ 263 (309)
...+.++++.++++++.+. | .+|..+.+++.+...+ ..++.++|..++.
T Consensus 243 ~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~ 302 (633)
T TIGR02442 243 SLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAAE 302 (633)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 1246788888888888762 2 3677777665543322 5799999877663
No 199
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.44 E-value=5.5e-12 Score=110.42 Aligned_cols=189 Identities=19% Similarity=0.238 Sum_probs=115.8
Q ss_pred cccccChHHHHHHHHHHh-------c---CC--------CCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCC
Q 021660 53 ADVAAHRDIVDTIDRLTS-------E---NR--------LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (309)
Q Consensus 53 ~~~ig~~~~~~~l~~~~~-------~---~~--------~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 114 (309)
..++||+++++.+...+. . .. ..+++|+||||+|||++|+.+++.+ +..+..+++..
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l-----~~pf~~~da~~ 151 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL-----NVPFAIADATT 151 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc-----CCCeEEechhh
Confidence 347999999998866552 1 11 2459999999999999999999987 44555554432
Q ss_pred Ccc----hHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH--------------HHHHHHHHHHHHhc-------
Q 021660 115 DRG----IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK--------------DAQFALRRVIEKYT------- 169 (309)
Q Consensus 115 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~--------------~~~~~l~~~l~~~~------- 169 (309)
... .......+..........+ ..+.+.+|+|||+|.+.+ ..++.|+++|+...
T Consensus 152 L~~~gyvG~d~e~~L~~~~~~~~~~l-~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~ 230 (413)
T TIGR00382 152 LTEAGYVGEDVENILLKLLQAADYDV-EKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQG 230 (413)
T ss_pred ccccccccccHHHHHHHHHHhCcccH-HhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCC
Confidence 110 1112222222222111111 112567999999999876 57889999997321
Q ss_pred ------CCceEEEEecCC---------------------------c-----------------------ccchhhhcce-
Q 021660 170 ------KNTRFALICNQV---------------------------N-----------------------KIIPALQSRC- 192 (309)
Q Consensus 170 ------~~~~~i~~~~~~---------------------------~-----------------------~l~~~l~~r~- 192 (309)
.+..+|.|+|-. . .+.|.+..|+
T Consensus 231 gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld 310 (413)
T TIGR00382 231 GRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLP 310 (413)
T ss_pred CccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCC
Confidence 122344444320 0 1335667787
Q ss_pred eEEEecCCChHHHHHHHHHH----HHH-------cCC--CCCHHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 021660 193 TRFRFAPLEPVHVTERLKHV----IEA-------EGL--DVTEGGLAALVRLCN---GDMRKALNILQSTH 247 (309)
Q Consensus 193 ~~i~~~~~~~~~~~~~l~~~----~~~-------~~~--~~~~~~l~~i~~~~~---g~~r~~~~~l~~~~ 247 (309)
.++.|.|++.+++.+++... +++ .++ .+++++++.|++.+- --.|.+...++...
T Consensus 311 ~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l 381 (413)
T TIGR00382 311 VIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLL 381 (413)
T ss_pred eEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhh
Confidence 67889999999999987652 221 233 578999999999852 12444555554433
No 200
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=3.8e-12 Score=117.71 Aligned_cols=197 Identities=18% Similarity=0.205 Sum_probs=138.9
Q ss_pred hhcCCCCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcc-----cccEEEEecCCCcch-
Q 021660 45 EKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY-----HNMILELNASDDRGI- 118 (309)
Q Consensus 45 ~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~- 118 (309)
+.-+-..++.+||+++.+..+.+.+.+....|-+|.|+||+|||.++..+|.++..... +..+..++-......
T Consensus 162 ~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGa 241 (786)
T COG0542 162 ELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGA 241 (786)
T ss_pred HHHhcCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccc
Confidence 33456678999999999999999999998888999999999999999999999854432 223444433221111
Q ss_pred ---HHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH---------HHHHHHHHHHHHhcCCceEEEEecC-----C
Q 021660 119 ---DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK---------DAQFALRRVIEKYTKNTRFALICNQ-----V 181 (309)
Q Consensus 119 ---~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~---------~~~~~l~~~l~~~~~~~~~i~~~~~-----~ 181 (309)
.++.+.++........ .++.+|+|||+|.+-. +..+.|...+..- ...+|.+|+. .
T Consensus 242 kyRGeFEeRlk~vl~ev~~-----~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG--eL~~IGATT~~EYRk~ 314 (786)
T COG0542 242 KYRGEFEERLKAVLKEVEK-----SKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG--ELRCIGATTLDEYRKY 314 (786)
T ss_pred cccCcHHHHHHHHHHHHhc-----CCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC--CeEEEEeccHHHHHHH
Confidence 1222333333222111 1467999999998742 2345555555532 3455665532 2
Q ss_pred cccchhhhcceeEEEecCCChHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhc------CCHHHHHHHHHHHHh
Q 021660 182 NKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA----EGLDVTEGGLAALVRLCN------GDMRKALNILQSTHM 248 (309)
Q Consensus 182 ~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~l~~i~~~~~------g~~r~~~~~l~~~~~ 248 (309)
-.-+++|.+||+.|.+..|+.++...+|+....+ +++.++++++...+..+. --|..++.+++.++.
T Consensus 315 iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a 391 (786)
T COG0542 315 IEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGA 391 (786)
T ss_pred hhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHH
Confidence 2457899999999999999999999998776554 478999999999998874 468899999987775
No 201
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.41 E-value=1.9e-11 Score=107.63 Aligned_cols=209 Identities=16% Similarity=0.165 Sum_probs=141.2
Q ss_pred CCCCccccccChHHHHHHHHHHhcCCC--CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHH
Q 021660 48 RPQSLADVAAHRDIVDTIDRLTSENRL--PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQI 125 (309)
Q Consensus 48 ~p~~~~~~ig~~~~~~~l~~~~~~~~~--~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (309)
...+|++++|....+..+.+.++.... ..++|.|++||||..+|+.+.+... ..+-.|+.+||... ....+.+.+
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~--R~~~PFIaiNCaAi-Pe~LlESEL 316 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSP--RANGPFIAINCAAI-PETLLESEL 316 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCc--ccCCCeEEEecccC-CHHHHHHHH
Confidence 445799999999988888777765433 2399999999999999999987752 23557889999873 333444444
Q ss_pred HHhhhcccc--------ccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHh-----------cCCceEEEEecCCc----
Q 021660 126 QDFASTQSF--------SFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-----------TKNTRFALICNQVN---- 182 (309)
Q Consensus 126 ~~~~~~~~~--------~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~-----------~~~~~~i~~~~~~~---- 182 (309)
......... ..-..++++.|++||+..|+...+..|+.++++. +.+.++|.+||...
T Consensus 317 FGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~~i 396 (560)
T COG3829 317 FGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEKMI 396 (560)
T ss_pred hCcCCccccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHHHHH
Confidence 332221111 0111246779999999999999999999999973 34678888887542
Q ss_pred ---ccchhhhcceeEEEe--cCCC--hHHHHHHHHHH----HHHcCC---CCCHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 021660 183 ---KIIPALQSRCTRFRF--APLE--PVHVTERLKHV----IEAEGL---DVTEGGLAALVRL-CNGDMRKALNILQSTH 247 (309)
Q Consensus 183 ---~l~~~l~~r~~~i~~--~~~~--~~~~~~~l~~~----~~~~~~---~~~~~~l~~i~~~-~~g~~r~~~~~l~~~~ 247 (309)
..-+.|.=|..++.+ +|+- ++++..+.... .++.+. .+++++++.+.++ ++||+|.+.|.++.+.
T Consensus 397 ~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVRELeNviER~v 476 (560)
T COG3829 397 AEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVRELENVIERAV 476 (560)
T ss_pred hcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhCCCCchHHHHHHHHHHHH
Confidence 233455556655444 4443 24444443333 333332 3889999999887 5899999999999988
Q ss_pred hhc---CCcCHHHHH
Q 021660 248 MAS---QQITEEAVY 259 (309)
Q Consensus 248 ~~~---~~i~~~~v~ 259 (309)
... ..|+.+++-
T Consensus 477 ~~~~~~~~I~~~~lp 491 (560)
T COG3829 477 NLVESDGLIDADDLP 491 (560)
T ss_pred hccCCcceeehhhcc
Confidence 633 335555543
No 202
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.39 E-value=6.1e-11 Score=103.17 Aligned_cols=197 Identities=15% Similarity=0.139 Sum_probs=132.4
Q ss_pred CccccccChHHHHHHHHHHhcCCC--CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHh
Q 021660 51 SLADVAAHRDIVDTIDRLTSENRL--PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDF 128 (309)
Q Consensus 51 ~~~~~ig~~~~~~~l~~~~~~~~~--~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (309)
.+.++||+...+..+.+.+.--.. ..+||.|++||||.-+|+++.+... -..-.++.+||.... ...+.+.+...
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~--R~~kPfV~~NCAAlP-esLlESELFGH 297 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSP--RRDKPFVKLNCAALP-ESLLESELFGH 297 (550)
T ss_pred ccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCc--ccCCCceeeeccccc-hHHHHHHHhcc
Confidence 466899999999988877764322 3399999999999999999977642 224467888887632 22233322221
Q ss_pred hhccc-cccC------CCCccEEEEEeCCCCCCHHHHHHHHHHHHHh-----------cCCceEEEEecCCc-------c
Q 021660 129 ASTQS-FSFG------VKASVKLVLLDEADAMTKDAQFALRRVIEKY-----------TKNTRFALICNQVN-------K 183 (309)
Q Consensus 129 ~~~~~-~~~~------~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~-----------~~~~~~i~~~~~~~-------~ 183 (309)
.+... ..++ ..++++.+++|||..++.+.+..|+.++++. .-++++|.+||..- +
T Consensus 298 eKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRDL~~~V~~G~ 377 (550)
T COG3604 298 EKGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLEEMVRDGE 377 (550)
T ss_pred cccccccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchhHHHHHHcCc
Confidence 11110 0011 1236778999999999999999999999963 23568888887532 3
Q ss_pred cchhhhcceeEEEecCCCh----HHHH----HHHHHHHHHcCC---CCCHHHHHHHHHHh-cCCHHHHHHHHHHHHhhc
Q 021660 184 IIPALQSRCTRFRFAPLEP----VHVT----ERLKHVIEAEGL---DVTEGGLAALVRLC-NGDMRKALNILQSTHMAS 250 (309)
Q Consensus 184 l~~~l~~r~~~i~~~~~~~----~~~~----~~l~~~~~~~~~---~~~~~~l~~i~~~~-~g~~r~~~~~l~~~~~~~ 250 (309)
.-..+.-|..++.+.-|+. +++. .++++...+.|. .+++++++.+..+. +||+|.+.|.++.++..+
T Consensus 378 FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 378 FRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred chhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 3345666665554444442 2332 344444445554 68999999999874 899999999999888754
No 203
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=9.4e-12 Score=99.78 Aligned_cols=169 Identities=24% Similarity=0.389 Sum_probs=116.2
Q ss_pred CccccccChHHHHHHHHHHhcC-------------CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCC--
Q 021660 51 SLADVAAHRDIVDTIDRLTSEN-------------RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD-- 115 (309)
Q Consensus 51 ~~~~~ig~~~~~~~l~~~~~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~-- 115 (309)
+.+++-|.++.+..+++.+... .+..+++|||||+|||.++++++++. ..+|+.+-.+..
T Consensus 175 ty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt-----dacfirvigselvq 249 (435)
T KOG0729|consen 175 TYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT-----DACFIRVIGSELVQ 249 (435)
T ss_pred ccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc-----CceEEeehhHHHHH
Confidence 5678888888888888776521 23349999999999999999999987 777777655532
Q ss_pred ----cchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCC-----------HHHHHHHHHHHHHh-----cCCceEE
Q 021660 116 ----RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT-----------KDAQFALRRVIEKY-----TKNTRFA 175 (309)
Q Consensus 116 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~-----------~~~~~~l~~~l~~~-----~~~~~~i 175 (309)
.+...+++ +.+++.+ ...++|++||+|.+. .+.+..+++++... ..+..++
T Consensus 250 kyvgegarmvre-lf~mart--------kkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvl 320 (435)
T KOG0729|consen 250 KYVGEGARMVRE-LFEMART--------KKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVL 320 (435)
T ss_pred HHhhhhHHHHHH-HHHHhcc--------cceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEE
Confidence 22222222 2222221 246899999999874 34466677777753 3466789
Q ss_pred EEecCCcccchhhhcce---eEEEecCCChHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCC
Q 021660 176 LICNQVNKIIPALQSRC---TRFRFAPLEPVHVTERLKHVIEAEGLDVTEG-GLAALVRLCNGD 235 (309)
Q Consensus 176 ~~~~~~~~l~~~l~~r~---~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~l~~i~~~~~g~ 235 (309)
++||.++.+++++.+.. ..++|.-|+.+-...+++-+++.- .++.+ -++.|++.|+..
T Consensus 321 matnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksm--sverdir~ellarlcpns 382 (435)
T KOG0729|consen 321 MATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSM--SVERDIRFELLARLCPNS 382 (435)
T ss_pred eecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEecccc--ccccchhHHHHHhhCCCC
Confidence 99999999999998754 669999999888888877655433 23322 245666666543
No 204
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.38 E-value=1.8e-11 Score=115.91 Aligned_cols=197 Identities=15% Similarity=0.201 Sum_probs=128.8
Q ss_pred CccccccChHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHh
Q 021660 51 SLADVAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDF 128 (309)
Q Consensus 51 ~~~~~ig~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (309)
.|++++|+...++.+.+.+... ...+++|+|++|||||++|+.+...... ....++.++|..... ..+...+...
T Consensus 374 ~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r--~~~~~v~i~c~~~~~-~~~~~~lfg~ 450 (686)
T PRK15429 374 EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGR--NNRRMVKMNCAAMPA-GLLESDLFGH 450 (686)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCC--CCCCeEEEecccCCh-hHhhhhhcCc
Confidence 5778999998888776655432 2234999999999999999999887532 245777788775321 2222211110
Q ss_pred hhcc-------ccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCceEEEEecCCc-------c
Q 021660 129 ASTQ-------SFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQVN-------K 183 (309)
Q Consensus 129 ~~~~-------~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~~i~~~~~~~-------~ 183 (309)
.... ....-..+.+++|+|||++.++.+.+..|+.++++.. .++++|++++..- .
T Consensus 451 ~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~ 530 (686)
T PRK15429 451 ERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADRE 530 (686)
T ss_pred ccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHHHcCc
Confidence 0000 0000012256799999999999999999999998632 3457777775432 2
Q ss_pred cchhhhcce--eEEEecCCCh--HHHHHHHHHHH----HHcCC---CCCHHHHHHHHHH-hcCCHHHHHHHHHHHHhhc
Q 021660 184 IIPALQSRC--TRFRFAPLEP--VHVTERLKHVI----EAEGL---DVTEGGLAALVRL-CNGDMRKALNILQSTHMAS 250 (309)
Q Consensus 184 l~~~l~~r~--~~i~~~~~~~--~~~~~~l~~~~----~~~~~---~~~~~~l~~i~~~-~~g~~r~~~~~l~~~~~~~ 250 (309)
+.+.+..|+ ..|.++|+.. +++..++...+ .+.|. .+++++++.+..+ ++||+|.+.+.++.++..+
T Consensus 531 f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 531 FRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred ccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 334455565 4466666653 45555554443 33343 4789999999886 5899999999999888654
No 205
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.37 E-value=2.5e-11 Score=105.11 Aligned_cols=143 Identities=22% Similarity=0.210 Sum_probs=98.6
Q ss_pred cccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHH------HHHH-
Q 021660 53 ADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVV------RQQI- 125 (309)
Q Consensus 53 ~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~- 125 (309)
..++|+++.+..+..++..+ .+++|.||||+|||++++.+++.+ +..++.+.+........+ ....
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l-----~~~~~~i~~t~~l~p~d~~G~~~~~~~~~ 96 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARAL-----GLPFVRIQCTPDLLPSDLLGTYAYAALLL 96 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHh-----CCCeEEEecCCCCCHHHhcCchhHhhhhc
Confidence 34888889888888777776 459999999999999999999998 577778877765433322 1111
Q ss_pred -HH-hhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHh------------cCCceEEEEec-----CCcccch
Q 021660 126 -QD-FASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY------------TKNTRFALICN-----QVNKIIP 186 (309)
Q Consensus 126 -~~-~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~------------~~~~~~i~~~~-----~~~~l~~ 186 (309)
.. +.......+.. ...++++|||++..+..++.|+.+|++. +....+|.++| ..+.+++
T Consensus 97 ~~~~~~~~~gpl~~~--~~~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~e 174 (329)
T COG0714 97 EPGEFRFVPGPLFAA--VRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPE 174 (329)
T ss_pred cCCeEEEecCCcccc--cceEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCH
Confidence 00 00000111111 1149999999999999999999999972 12233444557 4457889
Q ss_pred hhhcce-eEEEecCCChHH
Q 021660 187 ALQSRC-TRFRFAPLEPVH 204 (309)
Q Consensus 187 ~l~~r~-~~i~~~~~~~~~ 204 (309)
++.+|| ..+.+..|+..+
T Consensus 175 A~ldRf~~~~~v~yp~~~~ 193 (329)
T COG0714 175 ALLDRFLLRIYVDYPDSEE 193 (329)
T ss_pred HHHhhEEEEEecCCCCchH
Confidence 999999 777777774443
No 206
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3.2e-11 Score=98.71 Aligned_cols=170 Identities=22% Similarity=0.283 Sum_probs=108.8
Q ss_pred CccccccChHHHHHHHHHHhc------------CCCC-eEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCC--
Q 021660 51 SLADVAAHRDIVDTIDRLTSE------------NRLP-HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD-- 115 (309)
Q Consensus 51 ~~~~~ig~~~~~~~l~~~~~~------------~~~~-~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~-- 115 (309)
+++++-|.-.....+...+.- -.+| .++||||||+|||.+++.+++.+ +++++.+.++..
T Consensus 130 s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~m-----g~nfl~v~ss~lv~ 204 (388)
T KOG0651|consen 130 SFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATM-----GVNFLKVVSSALVD 204 (388)
T ss_pred CHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhc-----CCceEEeeHhhhhh
Confidence 788888877777777766531 1233 39999999999999999999998 777777665532
Q ss_pred ----cchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCC-----------HHHHHHHHHHHHHh-----cCCceEE
Q 021660 116 ----RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT-----------KDAQFALRRVIEKY-----TKNTRFA 175 (309)
Q Consensus 116 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~-----------~~~~~~l~~~l~~~-----~~~~~~i 175 (309)
.....+++.+...... .+++|++||+|.+. ...+..|.++++.. -..+.+|
T Consensus 205 kyiGEsaRlIRemf~yA~~~---------~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~I 275 (388)
T KOG0651|consen 205 KYIGESARLIRDMFRYAREV---------IPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTI 275 (388)
T ss_pred hhcccHHHHHHHHHHHHhhh---------CceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEE
Confidence 2223344443333322 57899999999774 23356677777743 3578899
Q ss_pred EEecCCcccchhhhcce---eEEEecCCChHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHhcC
Q 021660 176 LICNQVNKIIPALQSRC---TRFRFAPLEPVHVTERLKHVIEAE--GLDVTEGGLAALVRLCNG 234 (309)
Q Consensus 176 ~~~~~~~~l~~~l~~r~---~~i~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~l~~i~~~~~g 234 (309)
+++|+++.++++|.+.. ..+..+.|.......+++-..... .-.++.+++-.+.+-.+|
T Consensus 276 matNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~g 339 (388)
T KOG0651|consen 276 MATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNG 339 (388)
T ss_pred EecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccCh
Confidence 99999999999998754 446665555444444333222111 113554544444444443
No 207
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.36 E-value=1.8e-11 Score=107.07 Aligned_cols=150 Identities=19% Similarity=0.222 Sum_probs=95.7
Q ss_pred ccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcc--cccEEEEecCCC------------cc
Q 021660 52 LADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY--HNMILELNASDD------------RG 117 (309)
Q Consensus 52 ~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~--~~~~~~~~~~~~------------~~ 117 (309)
++++++.+..++.+...+..+ .+++|+||||||||++|+.++..+..... ....+.+..... .+
T Consensus 174 l~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vg 251 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVG 251 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCC
Confidence 567788888888888888765 56999999999999999999998854321 223333332210 00
Q ss_pred h----HHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHH-HHHHHHHHHH----------------------hcC
Q 021660 118 I----DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDA-QFALRRVIEK----------------------YTK 170 (309)
Q Consensus 118 ~----~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~-~~~l~~~l~~----------------------~~~ 170 (309)
. ..+.+.+..... ...++.+|||||+++...+. ...++.+++. .|.
T Consensus 252 y~~~~G~f~~~~~~A~~-------~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~ 324 (459)
T PRK11331 252 FRRKDGIFYNFCQQAKE-------QPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPE 324 (459)
T ss_pred eEecCchHHHHHHHHHh-------cccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCCC
Confidence 0 011111111111 11146899999999988553 5666666662 133
Q ss_pred CceEEEEecCCc----ccchhhhcceeEEEecCC-ChHHHHHHHH
Q 021660 171 NTRFALICNQVN----KIIPALQSRCTRFRFAPL-EPVHVTERLK 210 (309)
Q Consensus 171 ~~~~i~~~~~~~----~l~~~l~~r~~~i~~~~~-~~~~~~~~l~ 210 (309)
+..+|.|.|..+ .++.++++||..+++.|- +...+..++.
T Consensus 325 Nl~IIgTMNt~Drs~~~lD~AlrRRF~fi~i~p~~~~~~~~~~l~ 369 (459)
T PRK11331 325 NVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTPQFRNFLL 369 (459)
T ss_pred CeEEEEecCccccchhhccHHHHhhhheEEecCCCChHHHHHHHH
Confidence 456677777665 578899999999998773 4445555554
No 208
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=99.35 E-value=9.9e-11 Score=101.63 Aligned_cols=255 Identities=18% Similarity=0.221 Sum_probs=167.0
Q ss_pred hhhhcCCCCccccccChHHHHHHHHHHhcCCC------------CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEE
Q 021660 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRL------------PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (309)
Q Consensus 43 ~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~------------~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 110 (309)
+.+++...-..++.|+..+++.|.-++-++.. =++++.|.||+.||.|+..+.+.... ..+..
T Consensus 332 ~yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapR----gvYTT- 406 (721)
T KOG0482|consen 332 FYEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPR----GVYTT- 406 (721)
T ss_pred HHHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcc----cceec-
Confidence 45665555566999999999988888754311 13999999999999999999887522 12221
Q ss_pred ecCCCcchHHHHHHHHHhhh------ccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHh-------------cCC
Q 021660 111 NASDDRGIDVVRQQIQDFAS------TQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-------------TKN 171 (309)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~-------------~~~ 171 (309)
.....++..-....++-.. .....+ +..+|+.|||+|++......++.++|+.. +..
T Consensus 407 -GrGSSGVGLTAAVmkDpvTgEM~LEGGALVL---AD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~TtLNAR 482 (721)
T KOG0482|consen 407 -GRGSSGVGLTAAVMKDPVTGEMVLEGGALVL---ADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTTLNAR 482 (721)
T ss_pred -CCCCCccccchhhhcCCCCCeeEeccceEEE---ccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccccchhhh
Confidence 1111222222222221111 111111 25779999999999998899999999963 234
Q ss_pred ceEEEEecCCc-------------ccchhhhcceeE-------------------------------EEecCCChHHHHH
Q 021660 172 TRFALICNQVN-------------KIIPALQSRCTR-------------------------------FRFAPLEPVHVTE 207 (309)
Q Consensus 172 ~~~i~~~~~~~-------------~l~~~l~~r~~~-------------------------------i~~~~~~~~~~~~ 207 (309)
+.++.++|..+ .++.+|++||.. ..|.|++++-++.
T Consensus 483 ~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~ 562 (721)
T KOG0482|consen 483 TSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRR 562 (721)
T ss_pred HHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHH
Confidence 55666665432 467888888733 2466677777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHh--------------cCCHHHHHHHHHHHHhh-----cCCcCHHHHHhhhC-----
Q 021660 208 RLKHVIEAEGLDVTEGGLAALVRLC--------------NGDMRKALNILQSTHMA-----SQQITEEAVYLCTG----- 263 (309)
Q Consensus 208 ~l~~~~~~~~~~~~~~~l~~i~~~~--------------~g~~r~~~~~l~~~~~~-----~~~i~~~~v~~~~~----- 263 (309)
++. .+++..-.++++..++|...+ --.+|.++.+|+..... +..++.++|.+++.
T Consensus 563 yI~-~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme~s 641 (721)
T KOG0482|consen 563 YIS-LAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLMEMS 641 (721)
T ss_pred HHH-HHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHhh
Confidence 764 466767677888777777653 13688888888654432 26788888888772
Q ss_pred -------------CCChHHHHHHHHHHhc-CCHH-HHHHHHHHHHHhcCCCHHHHHHHh
Q 021660 264 -------------NPLPKDIEQISYWLLN-ESFA-DSFKRISEMKMRKGLALVDIVREV 307 (309)
Q Consensus 264 -------------~~~~~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~~~~~~l 307 (309)
....+.++.++..+.+ ++.. -.+..+.+++..+|+++.++...|
T Consensus 642 K~sL~~~~~~~~~~~~~~~if~iirel~~e~g~~~v~~s~~~~r~~~kGfs~~ql~~~i 700 (721)
T KOG0482|consen 642 KDSLYQDDGQKEDTSATDAIFAIIRELAGEGGKRCVKLSNAEQRCVRKGFSEAQLKKCI 700 (721)
T ss_pred hcccccccccccccchHHHHHHHHHHHHhhcCCceeeHHHHHHHHHHcCCCHHHHHHHH
Confidence 1235568888888876 3322 356666666669999999987765
No 209
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=3.7e-11 Score=98.83 Aligned_cols=160 Identities=24% Similarity=0.320 Sum_probs=105.1
Q ss_pred ccccccChHHHHHHHHHHhc-------CCC-------CeEEEECCCCCcHHHHHHHHHHHHc----cCcccccEEEEecC
Q 021660 52 LADVAAHRDIVDTIDRLTSE-------NRL-------PHLLLYGPPGTGKTSTILAVARKLY----GAQYHNMILELNAS 113 (309)
Q Consensus 52 ~~~~ig~~~~~~~l~~~~~~-------~~~-------~~~ll~G~~G~GKT~l~~~l~~~~~----~~~~~~~~~~~~~~ 113 (309)
|+.++-....++.+..+... +.. ..++++||||||||+|.+++|+.+. ...+....+++++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 45566666677766666431 111 1289999999999999999999983 23345567788776
Q ss_pred CCc------chHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHH---------------HHHHHHHHHHHhcC--
Q 021660 114 DDR------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD---------------AQFALRRVIEKYTK-- 170 (309)
Q Consensus 114 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~---------------~~~~l~~~l~~~~~-- 170 (309)
... +...+...+++..+. ......-.+++|||++.+... ..+.++.-++....
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~EL----v~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~ 296 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQEL----VEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYP 296 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHH----HhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCC
Confidence 431 222222233322221 111123567999999987421 25778888887654
Q ss_pred CceEEEEecCCcccchhhhcce-eEEEecCCChHHHHHHHHHHHHH
Q 021660 171 NTRFALICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEA 215 (309)
Q Consensus 171 ~~~~i~~~~~~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~ 215 (309)
++.++.++|-.+.++.++..|. .+..+.+|+...+.++++..+.+
T Consensus 297 NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 297 NVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred CEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHH
Confidence 3334445577889999999999 67788899999999988876653
No 210
>PHA02244 ATPase-like protein
Probab=99.34 E-value=4.4e-11 Score=102.02 Aligned_cols=129 Identities=23% Similarity=0.238 Sum_probs=84.9
Q ss_pred HHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHH--hhhccccccCCCCc
Q 021660 64 TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQD--FASTQSFSFGVKAS 141 (309)
Q Consensus 64 ~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 141 (309)
.+.+++..+. +++|+||+|||||++|+++++.+ +..++.++..... ..+...+.. .....+. .....+
T Consensus 111 ri~r~l~~~~--PVLL~GppGtGKTtLA~aLA~~l-----g~pfv~In~l~d~--~~L~G~i~~~g~~~dgpL-l~A~~~ 180 (383)
T PHA02244 111 DIAKIVNANI--PVFLKGGAGSGKNHIAEQIAEAL-----DLDFYFMNAIMDE--FELKGFIDANGKFHETPF-YEAFKK 180 (383)
T ss_pred HHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHh-----CCCEEEEecChHH--HhhcccccccccccchHH-HHHhhc
Confidence 5555665553 49999999999999999999997 4455555532100 000000000 0000000 001125
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHH-----------hcCCceEEEEecCC-----------cccchhhhcceeEEEecC
Q 021660 142 VKLVLLDEADAMTKDAQFALRRVIEK-----------YTKNTRFALICNQV-----------NKIIPALQSRCTRFRFAP 199 (309)
Q Consensus 142 ~~lliiDe~~~l~~~~~~~l~~~l~~-----------~~~~~~~i~~~~~~-----------~~l~~~l~~r~~~i~~~~ 199 (309)
+.+|+|||++.+.++.+..|..+++. .+++.++|+++|.. ..+.+++.+||..++|.-
T Consensus 181 GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv~I~~dy 260 (383)
T PHA02244 181 GGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFAPIEFDY 260 (383)
T ss_pred CCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcEEeeCCC
Confidence 78999999999999999999999873 23577888888862 466889999999999988
Q ss_pred CCh
Q 021660 200 LEP 202 (309)
Q Consensus 200 ~~~ 202 (309)
|+.
T Consensus 261 p~~ 263 (383)
T PHA02244 261 DEK 263 (383)
T ss_pred CcH
Confidence 774
No 211
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.34 E-value=2.5e-11 Score=105.07 Aligned_cols=108 Identities=20% Similarity=0.340 Sum_probs=75.8
Q ss_pred ccEEEEEeCCCCCCHH------------HHHHHHHHHHHhc----------CCceEEEEe----cCCcccchhhhcce-e
Q 021660 141 SVKLVLLDEADAMTKD------------AQFALRRVIEKYT----------KNTRFALIC----NQVNKIIPALQSRC-T 193 (309)
Q Consensus 141 ~~~lliiDe~~~l~~~------------~~~~l~~~l~~~~----------~~~~~i~~~----~~~~~l~~~l~~r~-~ 193 (309)
+.++|+|||+|++... .|..|+++++... .+..||+++ ..+..+.|.|..|+ .
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi 326 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPI 326 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence 6779999999998632 4778999998532 122233332 23456788999999 8
Q ss_pred EEEecCCChHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHhc--------CCHHHHHHHHHHHHh
Q 021660 194 RFRFAPLEPVHVTERLK-----------HVIEAEGL--DVTEGGLAALVRLCN--------GDMRKALNILQSTHM 248 (309)
Q Consensus 194 ~i~~~~~~~~~~~~~l~-----------~~~~~~~~--~~~~~~l~~i~~~~~--------g~~r~~~~~l~~~~~ 248 (309)
++.+.+++.+++..+|. ..++.+|+ .++++++..||+.+. --.|.+...++.+..
T Consensus 327 ~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~ 402 (441)
T TIGR00390 327 RVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLE 402 (441)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHH
Confidence 89999999999988872 22234454 578999999999863 236666666666553
No 212
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.34 E-value=9.3e-11 Score=106.09 Aligned_cols=205 Identities=18% Similarity=0.182 Sum_probs=134.6
Q ss_pred CccccccChHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHh
Q 021660 51 SLADVAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDF 128 (309)
Q Consensus 51 ~~~~~ig~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (309)
.+..++|....+..+...+... ...+++|+|++|+||+++|+.+...... ....++.++|..... ..+.+.+...
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~--~~~~~v~v~c~~~~~-~~~~~~lfg~ 213 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDR--KDKRFVAINCAAIPE-NLLESELFGY 213 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCc--CCCCeEEEECCCCCh-HHHHHHhcCC
Confidence 4556888888877777766532 2234999999999999999999876522 234578888876432 2222222111
Q ss_pred hhcc-------ccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCceEEEEecCC-------cc
Q 021660 129 ASTQ-------SFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV-------NK 183 (309)
Q Consensus 129 ~~~~-------~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~~i~~~~~~-------~~ 183 (309)
.... ....-..++++.|+|||++.++...+..|+.+++... .++++|++++.. ..
T Consensus 214 ~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~ 293 (445)
T TIGR02915 214 EKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGT 293 (445)
T ss_pred CCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCC
Confidence 1000 0001112467899999999999999999999998532 245777777543 23
Q ss_pred cchhhhcce--eEEEecCCCh--HHHHHHHHHHH----HHcC---CCCCHHHHHHHHHHh-cCCHHHHHHHHHHHHhhc-
Q 021660 184 IIPALQSRC--TRFRFAPLEP--VHVTERLKHVI----EAEG---LDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS- 250 (309)
Q Consensus 184 l~~~l~~r~--~~i~~~~~~~--~~~~~~l~~~~----~~~~---~~~~~~~l~~i~~~~-~g~~r~~~~~l~~~~~~~- 250 (309)
..+.|..|+ ..+.++|+.. +++..++...+ .+.+ ..+++++++.+.++. +||+|.+.+.++.++..+
T Consensus 294 ~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~~ 373 (445)
T TIGR02915 294 FREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMAE 373 (445)
T ss_pred ccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 345566665 4566666653 34444444433 3334 358999999999875 899999999999888654
Q ss_pred -CCcCHHHH
Q 021660 251 -QQITEEAV 258 (309)
Q Consensus 251 -~~i~~~~v 258 (309)
..|+.+++
T Consensus 374 ~~~i~~~~l 382 (445)
T TIGR02915 374 GNQITAEDL 382 (445)
T ss_pred CCcccHHHc
Confidence 35776665
No 213
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=4.2e-11 Score=113.23 Aligned_cols=190 Identities=17% Similarity=0.175 Sum_probs=136.4
Q ss_pred CCccccccChHHHHHHHHHHhc------------CCCCe-EEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCc
Q 021660 50 QSLADVAAHRDIVDTIDRLTSE------------NRLPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR 116 (309)
Q Consensus 50 ~~~~~~ig~~~~~~~l~~~~~~------------~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 116 (309)
..|+++-|-..++..+++.+-. -.+|. +||+||||+|||..|++++..+......+.+......+-.
T Consensus 262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~l 341 (1080)
T KOG0732|consen 262 VGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCL 341 (1080)
T ss_pred cCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhh
Confidence 3688899999999888887631 12333 9999999999999999999998655555544443333211
Q ss_pred --chHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHH-----------HHHHHHHHHHHhcCCce--EEEEecCC
Q 021660 117 --GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD-----------AQFALRRVIEKYTKNTR--FALICNQV 181 (309)
Q Consensus 117 --~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~-----------~~~~l~~~l~~~~~~~~--~i~~~~~~ 181 (309)
.+......+..+.+... +..+.|+++||+|.+.+- ....|+.+|+..+..+. +|.+||.+
T Consensus 342 skwvgEaERqlrllFeeA~-----k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRp 416 (1080)
T KOG0732|consen 342 SKWVGEAERQLRLLFEEAQ-----KTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRP 416 (1080)
T ss_pred ccccCcHHHHHHHHHHHHh-----ccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCc
Confidence 12222233333222211 127899999999977531 23568888887776554 44556999
Q ss_pred cccchhhhcc--e-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHH
Q 021660 182 NKIIPALQSR--C-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQ 244 (309)
Q Consensus 182 ~~l~~~l~~r--~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~ 244 (309)
+.++++++++ | ..+.|+-|+.+...+++.-+-....-.+....+..+++.+.|-.+.-+..|-
T Consensus 417 da~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLC 482 (1080)
T KOG0732|consen 417 DAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALC 482 (1080)
T ss_pred cccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHH
Confidence 9999999775 5 7789999999999999988777777789999999999999988887766663
No 214
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.33 E-value=3.9e-10 Score=102.72 Aligned_cols=206 Identities=20% Similarity=0.230 Sum_probs=135.1
Q ss_pred CccccccChHHHHHHHHHHhcCC--CCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHh
Q 021660 51 SLADVAAHRDIVDTIDRLTSENR--LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDF 128 (309)
Q Consensus 51 ~~~~~ig~~~~~~~l~~~~~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (309)
.+.+++|....+..+...+.... ...++|+|++|+||+++|+.+..... .....++.++|..... ..+...+...
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~--~~~~~~i~i~c~~~~~-~~~~~~lfg~ 212 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSP--RAKAPFIALNMAAIPK-DLIESELFGH 212 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCC--CCCCCeEeeeCCCCCH-HHHHHHhcCC
Confidence 35678898877777666654322 23399999999999999999888642 2345788888876422 2222222111
Q ss_pred hhcc-------ccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCceEEEEecCC-------cc
Q 021660 129 ASTQ-------SFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV-------NK 183 (309)
Q Consensus 129 ~~~~-------~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~~i~~~~~~-------~~ 183 (309)
.... ....-..+.++.|+|||++.++...+..|+.++++.. .++++|++++.. ..
T Consensus 213 ~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~ 292 (469)
T PRK10923 213 EKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGK 292 (469)
T ss_pred CCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCC
Confidence 0000 0000112346789999999999999999999998632 234777777543 23
Q ss_pred cchhhhcce--eEEEecCCCh--HHHHHHHHHHHH----HcCC---CCCHHHHHHHHHHh-cCCHHHHHHHHHHHHhhc-
Q 021660 184 IIPALQSRC--TRFRFAPLEP--VHVTERLKHVIE----AEGL---DVTEGGLAALVRLC-NGDMRKALNILQSTHMAS- 250 (309)
Q Consensus 184 l~~~l~~r~--~~i~~~~~~~--~~~~~~l~~~~~----~~~~---~~~~~~l~~i~~~~-~g~~r~~~~~l~~~~~~~- 250 (309)
..+.+..|+ ..|.++|+.. +++..++...++ +.+. .+++++++.+.++. +||+|.+.+.++.+...+
T Consensus 293 ~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~~ 372 (469)
T PRK10923 293 FREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAA 372 (469)
T ss_pred chHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 446677776 5566666653 455555555443 3333 47999999999874 899999999999888654
Q ss_pred -CCcCHHHHH
Q 021660 251 -QQITEEAVY 259 (309)
Q Consensus 251 -~~i~~~~v~ 259 (309)
..|+.+++.
T Consensus 373 ~~~i~~~~l~ 382 (469)
T PRK10923 373 GQEVLIQDLP 382 (469)
T ss_pred CCcccHHHCc
Confidence 457766653
No 215
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.33 E-value=1.3e-12 Score=98.81 Aligned_cols=112 Identities=24% Similarity=0.309 Sum_probs=72.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhh----ccccccCCCCccEEEEEeCCC
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAS----TQSFSFGVKASVKLVLLDEAD 151 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~lliiDe~~ 151 (309)
+++|+||||+|||++++.+++.+ ...+..+..........+......... ..........++.+++|||++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~-----~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin 75 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL-----GRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEIN 75 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH-----TCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCG
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-----hcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcc
Confidence 38999999999999999999998 666666666665444333221110000 000000111268899999999
Q ss_pred CCCHHHHHHHHHHHHHhc-------------C------CceEEEEecCCc----ccchhhhcce
Q 021660 152 AMTKDAQFALRRVIEKYT-------------K------NTRFALICNQVN----KIIPALQSRC 192 (309)
Q Consensus 152 ~l~~~~~~~l~~~l~~~~-------------~------~~~~i~~~~~~~----~l~~~l~~r~ 192 (309)
...++..+.|..+++... . +..+|+++|... .+.+++.+||
T Consensus 76 ~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 76 RAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp G--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred cCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 999999999999998521 1 267778888777 7788888886
No 216
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=99.32 E-value=3.5e-11 Score=93.23 Aligned_cols=135 Identities=19% Similarity=0.222 Sum_probs=111.1
Q ss_pred cccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcc
Q 021660 104 HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNK 183 (309)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 183 (309)
+...+.+-..+..+++.++..+........ ..+ ++|++++.+..++.++|++.+++||.++.||++|+....
T Consensus 25 ~~~~~~~f~~~~i~Vd~iReii~~~~~~~~-------~~k-~iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~~~~~ 96 (206)
T PRK08485 25 GKKNLRFFIKEEFKIEDAKEVIAEAYIAES-------EEK-IIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNL 96 (206)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHhhCCC-------CcE-EEEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeCChHh
Confidence 444444444546788888887777654322 234 467899999999999999999999999999999999999
Q ss_pred cchhhhcceeE-------------EEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 021660 184 IIPALQSRCTR-------------FRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH 247 (309)
Q Consensus 184 l~~~l~~r~~~-------------i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~ 247 (309)
+++++++||+. +.+.+++.+++.++++. +.++++...+++++.|++.+.|.+|.++.+.+...
T Consensus 97 llpTI~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~-~~ke~~~~~~ea~~lIa~la~~s~r~~l~l~~q~l 172 (206)
T PRK08485 97 LLPTIRSRLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE-LEKENKLSKEELKELIESLLKECVKYKIPLNEEEL 172 (206)
T ss_pred CchHHHhhheeccccccccccccccccCCCCHHHHHHHHHH-HHHcccccHHHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 99999999975 77899999999999998 78888888999999999999999998877665443
No 217
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.32 E-value=8.7e-11 Score=100.04 Aligned_cols=185 Identities=15% Similarity=0.152 Sum_probs=106.3
Q ss_pred ChHHHHHHHHHHhc--CCCCeEEEECCCCCcHHHHHHHHHHH--HccCcccccEEEEecCCCcchHHHHHHHHHhhhccc
Q 021660 58 HRDIVDTIDRLTSE--NRLPHLLLYGPPGTGKTSTILAVARK--LYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQS 133 (309)
Q Consensus 58 ~~~~~~~l~~~~~~--~~~~~~ll~G~~G~GKT~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (309)
++..++.+...+.. .....+.|+|++|+|||++|..+++. .........++.+..... ........+..+.....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~-~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPS-LEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SC-CHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccc-ccccccccccccccccc
Confidence 35667788888877 33444999999999999999999988 322222233444443322 12222332323222211
Q ss_pred cc--cC------------CCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEecC
Q 021660 134 FS--FG------------VKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAP 199 (309)
Q Consensus 134 ~~--~~------------~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~l~~r~~~i~~~~ 199 (309)
.. .. -...+.+|||||++... ....+...+.....++.+|+||+.. .+..........+++.+
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~kilvTTR~~-~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE--DLEELREPLPSFSSGSKILVTTRDR-SVAGSLGGTDKVIELEP 156 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH--HH-------HCHHSS-EEEEEESCG-GGGTTHHSCEEEEECSS
T ss_pred ccccccccccccccchhhhccccceeeeeeecccc--ccccccccccccccccccccccccc-ccccccccccccccccc
Confidence 00 00 01258899999987543 3444555555455577888887654 33333333367899999
Q ss_pred CChHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHhcCCHHHHHHHHHHH
Q 021660 200 LEPVHVTERLKHVIEAEG---LDVTEGGLAALVRLCNGDMRKALNILQST 246 (309)
Q Consensus 200 ~~~~~~~~~l~~~~~~~~---~~~~~~~l~~i~~~~~g~~r~~~~~l~~~ 246 (309)
++.++..+++.+.+.... ..-.++....|++.++|.|-.+.-+...+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l 206 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYL 206 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999998875443 12235677899999999887666655544
No 218
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.32 E-value=3.3e-11 Score=104.32 Aligned_cols=108 Identities=19% Similarity=0.322 Sum_probs=75.8
Q ss_pred ccEEEEEeCCCCCCHH------------HHHHHHHHHHHhc----------CCceEEEEe----cCCcccchhhhcce-e
Q 021660 141 SVKLVLLDEADAMTKD------------AQFALRRVIEKYT----------KNTRFALIC----NQVNKIIPALQSRC-T 193 (309)
Q Consensus 141 ~~~lliiDe~~~l~~~------------~~~~l~~~l~~~~----------~~~~~i~~~----~~~~~l~~~l~~r~-~ 193 (309)
+.++|+|||+|++... .|..|+++++... .+..||+++ ..+..+.|.|..|+ .
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi 328 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPI 328 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence 6779999999999632 4678999998532 122233322 23456789999999 8
Q ss_pred EEEecCCChHHHHHHHHH----H-------HHHcCC--CCCHHHHHHHHHHhc--------CCHHHHHHHHHHHHh
Q 021660 194 RFRFAPLEPVHVTERLKH----V-------IEAEGL--DVTEGGLAALVRLCN--------GDMRKALNILQSTHM 248 (309)
Q Consensus 194 ~i~~~~~~~~~~~~~l~~----~-------~~~~~~--~~~~~~l~~i~~~~~--------g~~r~~~~~l~~~~~ 248 (309)
++.+.+++.+++..+|.. . ++.+|+ .++++++..||+.+. --.|.+...++.+..
T Consensus 329 ~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~ 404 (443)
T PRK05201 329 RVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLE 404 (443)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHH
Confidence 899999999999888732 2 333455 578999999999863 236666666666553
No 219
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.30 E-value=1.5e-11 Score=96.73 Aligned_cols=126 Identities=20% Similarity=0.179 Sum_probs=73.8
Q ss_pred ccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCccc--ccEEE-------------EecCCCc
Q 021660 52 LADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYH--NMILE-------------LNASDDR 116 (309)
Q Consensus 52 ~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~--~~~~~-------------~~~~~~~ 116 (309)
|.+++||+..+..+.-+..++ .+++|+||||+|||++|+.+...+..-... ..+.. +......
T Consensus 2 f~dI~GQe~aKrAL~iAAaG~--h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~~~Pfr 79 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAGG--HHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIRQRPFR 79 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHCC----EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE---EE
T ss_pred hhhhcCcHHHHHHHHHHHcCC--CCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceecCCCcc
Confidence 789999999999999998875 579999999999999999998876321100 00000 0000000
Q ss_pred ---chHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHh-------------cCCceEEEEecC
Q 021660 117 ---GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-------------TKNTRFALICNQ 180 (309)
Q Consensus 117 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~-------------~~~~~~i~~~~~ 180 (309)
........+..-. ...+..-..++++||++||+..+.+...+.|...++.- |.+..+|.+.|.
T Consensus 80 ~phhs~s~~~liGgg~-~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~a~NP 158 (206)
T PF01078_consen 80 APHHSASEAALIGGGR-PPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYPARFLLVAAMNP 158 (206)
T ss_dssp EE-TT--HHHHHEEGG-GEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB--EEEEEEE-S
T ss_pred cCCCCcCHHHHhCCCc-CCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEecccEEEEEecc
Confidence 0011112222211 11111123357889999999999999999999999963 345556666653
No 220
>PRK15115 response regulator GlrR; Provisional
Probab=99.30 E-value=7.1e-10 Score=100.33 Aligned_cols=206 Identities=14% Similarity=0.167 Sum_probs=129.4
Q ss_pred ccccChHHHHHHHHHHhc--CCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhc
Q 021660 54 DVAAHRDIVDTIDRLTSE--NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAST 131 (309)
Q Consensus 54 ~~ig~~~~~~~l~~~~~~--~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (309)
.++|....+..+...+.. .....++++|++|+||+++|+.+.+.... ....++.++|..... ..+...+......
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r--~~~~f~~i~c~~~~~-~~~~~~lfg~~~~ 211 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPR--ASKPFIAINCGALPE-QLLESELFGHARG 211 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCC--CCCCeEEEeCCCCCH-HHHHHHhcCCCcC
Confidence 466766655544443322 12234999999999999999999886522 345788888876422 2222222111100
Q ss_pred c-------ccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCceEEEEecCCc-------ccch
Q 021660 132 Q-------SFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQVN-------KIIP 186 (309)
Q Consensus 132 ~-------~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~~i~~~~~~~-------~l~~ 186 (309)
. .......+.++.|+|||++.++...+..|+.+++... .++++|++++... .+.+
T Consensus 212 ~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~ 291 (444)
T PRK15115 212 AFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFRE 291 (444)
T ss_pred CCCCCccCCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccH
Confidence 0 0001112356799999999999999999999998632 1456777665321 2334
Q ss_pred hhhcce--eEEEecCCCh--HHHHHHHHHHHHH----cC---CCCCHHHHHHHHHHh-cCCHHHHHHHHHHHHhhc--CC
Q 021660 187 ALQSRC--TRFRFAPLEP--VHVTERLKHVIEA----EG---LDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS--QQ 252 (309)
Q Consensus 187 ~l~~r~--~~i~~~~~~~--~~~~~~l~~~~~~----~~---~~~~~~~l~~i~~~~-~g~~r~~~~~l~~~~~~~--~~ 252 (309)
.+..++ ..+.++|+.. +++..++...+++ .+ ..+++++++.+..+. +||+|.+.+.++.++..+ ..
T Consensus 292 ~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~~~~~ 371 (444)
T PRK15115 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPV 371 (444)
T ss_pred HHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCCc
Confidence 455555 3455655543 4555454444433 33 248999999999987 999999999999887654 45
Q ss_pred cCHHHHHhhh
Q 021660 253 ITEEAVYLCT 262 (309)
Q Consensus 253 i~~~~v~~~~ 262 (309)
|+.+++...+
T Consensus 372 i~~~~l~~~~ 381 (444)
T PRK15115 372 ISDALVEQAL 381 (444)
T ss_pred cChhhhhhhh
Confidence 7777765433
No 221
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.28 E-value=2.1e-10 Score=106.11 Aligned_cols=190 Identities=16% Similarity=0.138 Sum_probs=117.0
Q ss_pred hcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEec--CCCc--chHHHHHHHHHhhhccccccCCCCccEEE
Q 021660 70 SENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA--SDDR--GIDVVRQQIQDFASTQSFSFGVKASVKLV 145 (309)
Q Consensus 70 ~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 145 (309)
-+....+++|.|++|+|||++++.+++.+.. ...|+.+.. .... +.-.+...+..-........-.++++.+|
T Consensus 12 v~p~~g~vLl~G~~GtgKs~lar~l~~~~~~---~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL 88 (589)
T TIGR02031 12 VDPSLGGVAIRARAGTGKTALARALAEILPP---IMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVL 88 (589)
T ss_pred cCCCcceEEEEcCCCcHHHHHHHHHHHhCCc---CCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcE
Confidence 3444677999999999999999999998732 123444442 1111 11111111110000000001112367899
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHhc-------------CCceEEEEecCCc---ccchhhhcce-eEEEecC-CChHHHHH
Q 021660 146 LLDEADAMTKDAQFALRRVIEKYT-------------KNTRFALICNQVN---KIIPALQSRC-TRFRFAP-LEPVHVTE 207 (309)
Q Consensus 146 iiDe~~~l~~~~~~~l~~~l~~~~-------------~~~~~i~~~~~~~---~l~~~l~~r~-~~i~~~~-~~~~~~~~ 207 (309)
+|||++.+++..+..|+.+|++.. ..+.+|.++|... .+.+++..|| ..+.+.. ++.++..+
T Consensus 89 ~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~e 168 (589)
T TIGR02031 89 YVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLRVE 168 (589)
T ss_pred eccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHHHH
Confidence 999999999999999999998532 3456666666544 6888999998 4444443 44455556
Q ss_pred HHHHHHH-----------------------HcCCCCCHHHHHHHHHHh---c-CCHHHHHHHHHHHHhhc-----CCcCH
Q 021660 208 RLKHVIE-----------------------AEGLDVTEGGLAALVRLC---N-GDMRKALNILQSTHMAS-----QQITE 255 (309)
Q Consensus 208 ~l~~~~~-----------------------~~~~~~~~~~l~~i~~~~---~-g~~r~~~~~l~~~~~~~-----~~i~~ 255 (309)
++++... ...+.++++.+++|++.+ + ..+|..+.+++.+...+ ..++.
T Consensus 169 il~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~gr~~V~~ 248 (589)
T TIGR02031 169 IVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALHGRTEVTE 248 (589)
T ss_pred HHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhCCCCCCH
Confidence 5554331 124678898888888876 2 23677777665443322 57999
Q ss_pred HHHHhhh
Q 021660 256 EAVYLCT 262 (309)
Q Consensus 256 ~~v~~~~ 262 (309)
+++..++
T Consensus 249 ~Dv~~a~ 255 (589)
T TIGR02031 249 EDLKLAV 255 (589)
T ss_pred HHHHHHH
Confidence 9988776
No 222
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.27 E-value=1.7e-11 Score=88.35 Aligned_cols=110 Identities=25% Similarity=0.223 Sum_probs=59.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhc--cccccC-CCCccEEEEEeCCCC
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAST--QSFSFG-VKASVKLVLLDEADA 152 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~lliiDe~~~ 152 (309)
|+||+|+||+|||++++.+++.+ +..+..+..+......++... ..... ....+. .-.-..++++||+++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~-----~~~f~RIq~tpdllPsDi~G~--~v~~~~~~~f~~~~GPif~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL-----GLSFKRIQFTPDLLPSDILGF--PVYDQETGEFEFRPGPIFTNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT-----T--EEEEE--TT--HHHHHEE--EEEETTTTEEEEEE-TT-SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHc-----CCceeEEEecCCCCcccceee--eeeccCCCeeEeecChhhhceeeeccccc
Confidence 58999999999999999999998 555666655543332222211 00000 000000 001235999999999
Q ss_pred CCHHHHHHHHHHHHHh-----------cCCceEEEEecCCc-----ccchhhhcce
Q 021660 153 MTKDAQFALRRVIEKY-----------TKNTRFALICNQVN-----KIIPALQSRC 192 (309)
Q Consensus 153 l~~~~~~~l~~~l~~~-----------~~~~~~i~~~~~~~-----~l~~~l~~r~ 192 (309)
.++..+..|+++|++. +....+|.+.|..+ .+++++.+||
T Consensus 74 appktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 74 APPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp S-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred CCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 9999999999999973 22234444556543 6778888887
No 223
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.27 E-value=3.6e-10 Score=104.65 Aligned_cols=126 Identities=17% Similarity=0.179 Sum_probs=86.6
Q ss_pred CccEEEEEeCCCCCCHHHHHHHHHHHHHhc---------------------CCceEEEEecCC--cccchhhhccee---
Q 021660 140 ASVKLVLLDEADAMTKDAQFALRRVIEKYT---------------------KNTRFALICNQV--NKIIPALQSRCT--- 193 (309)
Q Consensus 140 ~~~~lliiDe~~~l~~~~~~~l~~~l~~~~---------------------~~~~~i~~~~~~--~~l~~~l~~r~~--- 193 (309)
+++++|+|||++.+++..+..|+++|+... -+.++|++++.. ..+.+.+.+||.
T Consensus 216 AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~rf~~y~ 295 (608)
T TIGR00764 216 AHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRSRIRGYG 295 (608)
T ss_pred CCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHHHhcCCe
Confidence 456799999999999999999999997521 134567777643 467888988885
Q ss_pred E-EEecC---CChHH---HHHHHHHHHHHcC--CCCCHHHHHHHHHHhc----------CCHHHHHHHHHHHHhhc----
Q 021660 194 R-FRFAP---LEPVH---VTERLKHVIEAEG--LDVTEGGLAALVRLCN----------GDMRKALNILQSTHMAS---- 250 (309)
Q Consensus 194 ~-i~~~~---~~~~~---~~~~l~~~~~~~~--~~~~~~~l~~i~~~~~----------g~~r~~~~~l~~~~~~~---- 250 (309)
+ +.|.. .+.+. +..++.+.+++.| ..+++++++.+.+.+. .+.|.+-++++.+...+
T Consensus 296 v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~ 375 (608)
T TIGR00764 296 YEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGDIAKSSG 375 (608)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHhcC
Confidence 2 34422 23333 3455666666653 3589999999986542 35888888887764322
Q ss_pred -CCcCHHHHHhhhCCC
Q 021660 251 -QQITEEAVYLCTGNP 265 (309)
Q Consensus 251 -~~i~~~~v~~~~~~~ 265 (309)
..|+.++|.+++...
T Consensus 376 ~~~I~~ehV~~Ai~~~ 391 (608)
T TIGR00764 376 KVYVTAEHVLKAKKLA 391 (608)
T ss_pred CceecHHHHHHHHHHH
Confidence 468888888776544
No 224
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.27 E-value=1.3e-10 Score=106.02 Aligned_cols=156 Identities=22% Similarity=0.271 Sum_probs=97.2
Q ss_pred ccccccChHHHHHHHHHHhcCCC------------CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcch-
Q 021660 52 LADVAAHRDIVDTIDRLTSENRL------------PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI- 118 (309)
Q Consensus 52 ~~~~ig~~~~~~~l~~~~~~~~~------------~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~- 118 (309)
...+.|++.++..+.-.+.++.. .++||+|+||+|||++++.+++..... .+.........+.
T Consensus 202 ~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~----~~~~~~~~~~~~l~ 277 (509)
T smart00350 202 APSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA----VYTTGKGSSAVGLT 277 (509)
T ss_pred CccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcc----eEcCCCCCCcCCcc
Confidence 34678888887777766655421 169999999999999999999876321 1211100010000
Q ss_pred -HHHHHHHH-Hh-hhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHh-------------cCCceEEEEecCCc
Q 021660 119 -DVVRQQIQ-DF-ASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-------------TKNTRFALICNQVN 182 (309)
Q Consensus 119 -~~~~~~~~-~~-~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~-------------~~~~~~i~~~~~~~ 182 (309)
..+..... .+ .+.... ..++.++++|||++.+.+..+..|+++|+.. +..+.+|.++|...
T Consensus 278 ~~~~~~~~~g~~~~~~G~l---~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~ 354 (509)
T smart00350 278 AAVTRDPETREFTLEGGAL---VLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIG 354 (509)
T ss_pred ccceEccCcceEEecCccE---EecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCC
Confidence 00000000 00 000000 1235789999999999999999999999853 24567788887542
Q ss_pred -------------ccchhhhcce-eE-EEecCCChHHHHHHHHHHHH
Q 021660 183 -------------KIIPALQSRC-TR-FRFAPLEPVHVTERLKHVIE 214 (309)
Q Consensus 183 -------------~l~~~l~~r~-~~-i~~~~~~~~~~~~~l~~~~~ 214 (309)
.+++++.+|| .. +-...++.+.-.+++++.+.
T Consensus 355 g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 355 GRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred cccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHH
Confidence 5788999999 43 34456666666666666543
No 225
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=9.9e-10 Score=99.24 Aligned_cols=207 Identities=16% Similarity=0.179 Sum_probs=132.0
Q ss_pred cccccChHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcc--hHHHHHHHHHh
Q 021660 53 ADVAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG--IDVVRQQIQDF 128 (309)
Q Consensus 53 ~~~ig~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 128 (309)
.+++--+.+++...+..-.. +.++++|+||+|+|||.|++++++++. .....++..++|....+ .+.+...+...
T Consensus 408 ~d~i~~~s~kke~~n~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~v 486 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSPVFRHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNV 486 (952)
T ss_pred CceeecchhhhhhhhhhcccccccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHH
Confidence 55666666665555433222 345699999999999999999999986 44455666677765433 33333333332
Q ss_pred hhccccccCCCCccEEEEEeCCCCCCHH----------H----HHHHHHHHHHh---cCCceEEEEecCCcccchhhhcc
Q 021660 129 ASTQSFSFGVKASVKLVLLDEADAMTKD----------A----QFALRRVIEKY---TKNTRFALICNQVNKIIPALQSR 191 (309)
Q Consensus 129 ~~~~~~~~~~~~~~~lliiDe~~~l~~~----------~----~~~l~~~l~~~---~~~~~~i~~~~~~~~l~~~l~~r 191 (309)
..... ...+.+|++||+|.+... . ...|.+++... .....+|+++.....+.+.|.+.
T Consensus 487 fse~~-----~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~ 561 (952)
T KOG0735|consen 487 FSEAL-----WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSP 561 (952)
T ss_pred HHHHH-----hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCc
Confidence 21111 116899999999988531 1 12233333332 22335666667777777776553
Q ss_pred --e-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCH-HHHHHHHHHHHhh---------cCCcCHHHH
Q 021660 192 --C-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDM-RKALNILQSTHMA---------SQQITEEAV 258 (309)
Q Consensus 192 --~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~-r~~~~~l~~~~~~---------~~~i~~~~v 258 (309)
| .++.+++|...+..++|+..++........+.++.++..++|.. ..+.-..+++... .+.+|.+++
T Consensus 562 ~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f 641 (952)
T KOG0735|consen 562 LLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELF 641 (952)
T ss_pred cceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHH
Confidence 4 66889999999999999999988877778888999999998843 3333333333322 235677777
Q ss_pred HhhhCCC
Q 021660 259 YLCTGNP 265 (309)
Q Consensus 259 ~~~~~~~ 265 (309)
.+.+...
T Consensus 642 ~ksL~~F 648 (952)
T KOG0735|consen 642 EKSLKDF 648 (952)
T ss_pred HHHHHhc
Confidence 6666543
No 226
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.27 E-value=1.2e-09 Score=99.33 Aligned_cols=205 Identities=16% Similarity=0.200 Sum_probs=129.3
Q ss_pred ccccccChHHHHHHHHHHhcCC--CCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhh
Q 021660 52 LADVAAHRDIVDTIDRLTSENR--LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFA 129 (309)
Q Consensus 52 ~~~~ig~~~~~~~l~~~~~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (309)
+..++|....+..+...+.... ..+++++|++|+||+++++.+..... .....++.++|..... ..+...+....
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~--~~~~~~~~i~c~~~~~-~~~~~~lfg~~ 218 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSR--RAKGPFIKVNCAALPE-SLLESELFGHE 218 (457)
T ss_pred ccceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCC--CCCCCeEEEECCCCCH-HHHHHHhcCCC
Confidence 3457777666665555543321 23499999999999999999977642 2345678888876432 22222221100
Q ss_pred hcc-------ccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCceEEEEecCCc-------cc
Q 021660 130 STQ-------SFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQVN-------KI 184 (309)
Q Consensus 130 ~~~-------~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~~i~~~~~~~-------~l 184 (309)
... ....-..+++++|+|||++.++...+..|+.++++.. .++++|++++... ..
T Consensus 219 ~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~ 298 (457)
T PRK11361 219 KGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTF 298 (457)
T ss_pred CCCCCCCCCCCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCc
Confidence 000 0001112356799999999999999999999998532 2457777776431 23
Q ss_pred chhhhcce--eEEEecCCC--hHHHHHHHHHHHH----HcC---CCCCHHHHHHHHHHh-cCCHHHHHHHHHHHHhhc--
Q 021660 185 IPALQSRC--TRFRFAPLE--PVHVTERLKHVIE----AEG---LDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS-- 250 (309)
Q Consensus 185 ~~~l~~r~--~~i~~~~~~--~~~~~~~l~~~~~----~~~---~~~~~~~l~~i~~~~-~g~~r~~~~~l~~~~~~~-- 250 (309)
.+.+..++ ..+.++|+. .+++..++...+. +.+ ..+++++++.+..+. +||+|.+.+.++.+...+
T Consensus 299 ~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~~~ 378 (457)
T PRK11361 299 REDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSG 378 (457)
T ss_pred hHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhCCC
Confidence 34555555 445566665 2445444433333 223 358999999999875 899999999999887654
Q ss_pred CCcCHHHHH
Q 021660 251 QQITEEAVY 259 (309)
Q Consensus 251 ~~i~~~~v~ 259 (309)
..|+.+++.
T Consensus 379 ~~i~~~~l~ 387 (457)
T PRK11361 379 PIIFSEDLP 387 (457)
T ss_pred CcccHHHCh
Confidence 357766654
No 227
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.23 E-value=7.8e-10 Score=102.18 Aligned_cols=123 Identities=15% Similarity=0.196 Sum_probs=83.1
Q ss_pred CccEEEEEeCCCCCCHHHHHHHHHHHHHhc---------------------CCceEEEEecCC--cccchhhhccee---
Q 021660 140 ASVKLVLLDEADAMTKDAQFALRRVIEKYT---------------------KNTRFALICNQV--NKIIPALQSRCT--- 193 (309)
Q Consensus 140 ~~~~lliiDe~~~l~~~~~~~l~~~l~~~~---------------------~~~~~i~~~~~~--~~l~~~l~~r~~--- 193 (309)
+++++|+|||++.+++..+..|+++|+... -+.++|++++.. ..+.+.|..|+.
T Consensus 225 AnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL~~rfk~~~ 304 (637)
T PRK13765 225 AHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPALRSRIKGYG 304 (637)
T ss_pred CCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhHHHHHHhccCe
Confidence 467899999999999999999999997421 134677777653 355778888873
Q ss_pred -EEEecC---CChHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHhc---CC-------HHHHHHHHHHHHhhc----
Q 021660 194 -RFRFAP---LEPVHVTERLKHVIEAE-----GLDVTEGGLAALVRLCN---GD-------MRKALNILQSTHMAS---- 250 (309)
Q Consensus 194 -~i~~~~---~~~~~~~~~l~~~~~~~-----~~~~~~~~l~~i~~~~~---g~-------~r~~~~~l~~~~~~~---- 250 (309)
.++|.. -+++....++....++. -..++++++..|.+++. |+ .+.+.++++.+...+
T Consensus 305 v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~ 384 (637)
T PRK13765 305 YEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVAGDIARSEG 384 (637)
T ss_pred EEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHHHhhc
Confidence 355543 23455666665444432 23689999999998662 32 677777777655433
Q ss_pred -CCcCHHHHHhhh
Q 021660 251 -QQITEEAVYLCT 262 (309)
Q Consensus 251 -~~i~~~~v~~~~ 262 (309)
+.++.+++.++.
T Consensus 385 ~~~i~~~~v~~a~ 397 (637)
T PRK13765 385 AELTTAEHVLEAK 397 (637)
T ss_pred cceecHHHHHHHH
Confidence 457777776665
No 228
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.23 E-value=5.9e-10 Score=101.42 Aligned_cols=204 Identities=19% Similarity=0.196 Sum_probs=135.0
Q ss_pred cccccChHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhh
Q 021660 53 ADVAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAS 130 (309)
Q Consensus 53 ~~~ig~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (309)
..++|.......+...+... ....+++.|++|+||+++++.+..... .....++.++|.... .+.+.+.+.....
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~--~~~~~~~~~~c~~~~-~~~~~~~lfg~~~ 210 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSP--RANGPFIALNMAAIP-KDLIESELFGHEK 210 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCC--CCCCCeEEEeCCCCC-HHHHHHHhcCCCC
Confidence 35777766666665554332 223499999999999999999887642 234677788887642 2233332211000
Q ss_pred c-----c--ccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCceEEEEecCCc-------ccc
Q 021660 131 T-----Q--SFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQVN-------KII 185 (309)
Q Consensus 131 ~-----~--~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~~i~~~~~~~-------~l~ 185 (309)
. . ....-..+.++.|+|||++.++.+.+..|+.++++.. .++++|++++... ...
T Consensus 211 ~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~ 290 (463)
T TIGR01818 211 GAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFR 290 (463)
T ss_pred CCCCCcccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcH
Confidence 0 0 0000112346789999999999999999999998532 2456777775432 334
Q ss_pred hhhhcce--eEEEecCCC--hHHHHHHHHHHHHH----cC---CCCCHHHHHHHHHHh-cCCHHHHHHHHHHHHhhc--C
Q 021660 186 PALQSRC--TRFRFAPLE--PVHVTERLKHVIEA----EG---LDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS--Q 251 (309)
Q Consensus 186 ~~l~~r~--~~i~~~~~~--~~~~~~~l~~~~~~----~~---~~~~~~~l~~i~~~~-~g~~r~~~~~l~~~~~~~--~ 251 (309)
+.+..|+ ..++++|+. .+++..++..++.+ .+ ..+++++++.|.++. +||+|.+.+.++.++..+ .
T Consensus 291 ~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~~~~ 370 (463)
T TIGR01818 291 EDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMASGD 370 (463)
T ss_pred HHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCC
Confidence 4666665 467788877 56777766655443 23 368999999999875 899999999999888755 4
Q ss_pred CcCHHHHH
Q 021660 252 QITEEAVY 259 (309)
Q Consensus 252 ~i~~~~v~ 259 (309)
.|+.+++.
T Consensus 371 ~i~~~~l~ 378 (463)
T TIGR01818 371 EVLVSDLP 378 (463)
T ss_pred cccHHhch
Confidence 57777664
No 229
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=99.20 E-value=2.5e-10 Score=89.53 Aligned_cols=163 Identities=17% Similarity=0.235 Sum_probs=108.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCc-ccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCC----C
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEA----D 151 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~----~ 151 (309)
++|+|..-.-+...++.+.+.+...+ ....+..++..... . ..+.....+.+ +.. ++++|+|.++ +
T Consensus 1 Yll~G~d~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~----~~l~~~~~s~s--lF~--~~klvii~~~~~l~~ 71 (172)
T PF06144_consen 1 YLLYGEDSFLIEEYIKKIRKALIKKDFDDFNVIVFDGSEDD-I----DELLEELQSPS--LFG--DKKLVIIKNAPFLKD 71 (172)
T ss_dssp EEEEES-HHHHHHHHHHHHHHHHTTTEEEEEEEE-STTS-H-H----H-HTTTSTTTT--SSS--SEEEEEEE-----TT
T ss_pred CEEEeCcHHHHHHHHHHHHHHhhcCCCccceEEEEccccCc-H----HHHHHHHhcCC--ccC--CCeEEEEecCccccc
Confidence 57899887777778888877743333 23344444443321 1 11333333322 222 6899999998 4
Q ss_pred CCCHHHHHHHHHHHHHhcCCceEEEEec-CCc---ccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHH
Q 021660 152 AMTKDAQFALRRVIEKYTKNTRFALICN-QVN---KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAA 227 (309)
Q Consensus 152 ~l~~~~~~~l~~~l~~~~~~~~~i~~~~-~~~---~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 227 (309)
.........|..++..+++++.+|+.++ ..+ ++.+.+...+.++.+.++...++..|++.++++.|+.+++++++.
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~ 151 (172)
T PF06144_consen 72 KLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIKERAKKNGLKIDPDAAQY 151 (172)
T ss_dssp -S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHHHHTT-EE-HHHHHH
T ss_pred cccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 4556678899999999888888888887 333 456677778899999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 021660 228 LVRLCNGDMRKALNILQSTHM 248 (309)
Q Consensus 228 i~~~~~g~~r~~~~~l~~~~~ 248 (309)
+++++++|++.+.+.++++++
T Consensus 152 L~~~~~~d~~~l~~EleKL~L 172 (172)
T PF06144_consen 152 LIERVGNDLSLLQNELEKLSL 172 (172)
T ss_dssp HHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhChHHHHHHHHHHHhcC
Confidence 999999999999999999864
No 230
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.19 E-value=2.5e-10 Score=88.48 Aligned_cols=124 Identities=15% Similarity=0.174 Sum_probs=77.8
Q ss_pred cccChHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhcc
Q 021660 55 VAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQ 132 (309)
Q Consensus 55 ~ig~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (309)
+||....++.+.+.++.- ...+++|+|++||||+.+|+.+.+.. ......|+.++|.... .+.+...+.......
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s--~r~~~pfi~vnc~~~~-~~~~e~~LFG~~~~~ 77 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS--PRKNGPFISVNCAALP-EELLESELFGHEKGA 77 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS--TTTTS-EEEEETTTS--HHHHHHHHHEBCSSS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh--hcccCCeEEEehhhhh-cchhhhhhhcccccc
Confidence 467777777666665532 22449999999999999999998843 2235679999998743 233333332211100
Q ss_pred -------ccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHh-----------cCCceEEEEecCC
Q 021660 133 -------SFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-----------TKNTRFALICNQV 181 (309)
Q Consensus 133 -------~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~-----------~~~~~~i~~~~~~ 181 (309)
....-..++.+.|+|||++.|+...+..|+++|+.. +.++++|++|+..
T Consensus 78 ~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 78 FTGARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp STTTSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred ccccccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 000111246789999999999999999999999963 2366788887643
No 231
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.19 E-value=2.1e-11 Score=94.74 Aligned_cols=106 Identities=25% Similarity=0.296 Sum_probs=67.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCC
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT 154 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~ 154 (309)
.+++|.||+|+|||.+++.+++.+.. +....++.++.......+.....+......... .-...+..||++||+|++.
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~-~v~~~~~gVVllDEidKa~ 81 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEYSEGDDVESSVSKLLGSPPG-YVGAEEGGVVLLDEIDKAH 81 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTC-HHHHHHHTEEEEETGGGCS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccccchHHhhhhhhhhcccc-eeeccchhhhhhHHHhhcc
Confidence 45999999999999999999999942 223466677766544311111111111111111 0011134599999999999
Q ss_pred H-----------HHHHHHHHHHHHh-----------cCCceEEEEecCCc
Q 021660 155 K-----------DAQFALRRVIEKY-----------TKNTRFALICNQVN 182 (309)
Q Consensus 155 ~-----------~~~~~l~~~l~~~-----------~~~~~~i~~~~~~~ 182 (309)
+ ..++.|+++++.- ..++.||+++|-..
T Consensus 82 ~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 82 PSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp HTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred ccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 9 9999999999962 13556777776543
No 232
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.18 E-value=1.9e-09 Score=97.26 Aligned_cols=152 Identities=19% Similarity=0.181 Sum_probs=95.3
Q ss_pred CCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCc-c-----------
Q 021660 50 QSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR-G----------- 117 (309)
Q Consensus 50 ~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~----------- 117 (309)
..|.++.|+..+++.+...+.++ .+++|.||||+|||++++.+...+..... ...++....... +
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~~g--~~vlliG~pGsGKTtlar~l~~llp~~~~-~~~le~~~i~s~~g~~~~~~~~~~~ 265 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAAGG--HNLLLFGPPGSGKTMLASRLQGILPPLTN-EEAIETARIWSLVGKLIDRKQIKQR 265 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhccCC--CEEEEEecCCCCHHHHHHHHhcccCCCCC-cEEEeccccccchhhhccccccccC
Confidence 37899999999999888877665 56999999999999999999876632211 111111110000 0
Q ss_pred -h------HHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHh-------------cCCceEEEE
Q 021660 118 -I------DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-------------TKNTRFALI 177 (309)
Q Consensus 118 -~------~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~-------------~~~~~~i~~ 177 (309)
+ ......+..-.. .....-..+++.+|+|||++.+.+..++.|...|+.. +.+..+|.+
T Consensus 266 Pf~~p~~s~s~~~~~ggg~~-~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa 344 (499)
T TIGR00368 266 PFRSPHHSASKPALVGGGPI-PLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAA 344 (499)
T ss_pred CccccccccchhhhhCCccc-cchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEe
Confidence 0 000000000000 0000112236789999999999999999999999853 245677777
Q ss_pred ecCCc-----------------------ccchhhhcce-eEEEecCCChHHH
Q 021660 178 CNQVN-----------------------KIIPALQSRC-TRFRFAPLEPVHV 205 (309)
Q Consensus 178 ~~~~~-----------------------~l~~~l~~r~-~~i~~~~~~~~~~ 205 (309)
+|... ++...+++|| ..+.+++++..++
T Consensus 345 ~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l 396 (499)
T TIGR00368 345 MNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKL 396 (499)
T ss_pred cCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHH
Confidence 76421 4666788898 6678887765543
No 233
>PF13173 AAA_14: AAA domain
Probab=99.17 E-value=4.3e-10 Score=83.56 Aligned_cols=120 Identities=23% Similarity=0.323 Sum_probs=76.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHH-HHHHHhhhccccccCCCCccEEEEEeCCCCC
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVR-QQIQDFASTQSFSFGVKASVKLVLLDEADAM 153 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l 153 (309)
+.++|+||.|+||||+++.+++.+. ....++.++..+........ +....+.... .. +..+|+|||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPDLLEYFLELI----KP--GKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhhhHHHHHHhh----cc--CCcEEEEehhhhh
Confidence 3489999999999999999999873 22344445544422211110 0111111110 01 5689999999998
Q ss_pred CHHHHHHHHHHHHHhcCCceEEEEecCCcc----cchhhhcceeEEEecCCChHHH
Q 021660 154 TKDAQFALRRVIEKYTKNTRFALICNQVNK----IIPALQSRCTRFRFAPLEPVHV 205 (309)
Q Consensus 154 ~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~----l~~~l~~r~~~i~~~~~~~~~~ 205 (309)
. +....+..+.+.. .+..+|++++.... ....+..|...+++.|++..|.
T Consensus 74 ~-~~~~~lk~l~d~~-~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 74 P-DWEDALKFLVDNG-PNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred c-cHHHHHHHHHHhc-cCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 6 4555666666644 46778887765433 3456777889999999998774
No 234
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.17 E-value=1e-09 Score=103.35 Aligned_cols=154 Identities=16% Similarity=0.148 Sum_probs=91.5
Q ss_pred cccccChHHHHHHHHHHhcCCC---------------------CeEEEECCCCCcHHHHHHHHHHHHccCcc--cccEEE
Q 021660 53 ADVAAHRDIVDTIDRLTSENRL---------------------PHLLLYGPPGTGKTSTILAVARKLYGAQY--HNMILE 109 (309)
Q Consensus 53 ~~~ig~~~~~~~l~~~~~~~~~---------------------~~~ll~G~~G~GKT~l~~~l~~~~~~~~~--~~~~~~ 109 (309)
..+.|++.+++.+.-.+-++.. .++||+|+||+|||++++.+++......+ +..+..
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~ 529 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSS 529 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcc
Confidence 4688999998877666644321 15999999999999999999886421110 001111
Q ss_pred EecCCCcchHHHHHHHHHhhhccc--cccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHh-------------cCCceE
Q 021660 110 LNASDDRGIDVVRQQIQDFASTQS--FSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-------------TKNTRF 174 (309)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~-------------~~~~~~ 174 (309)
+.+... ............ ...-..+..++++|||++.++...+..|+++|+.. +..+.+
T Consensus 530 vgLTa~------~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rV 603 (915)
T PTZ00111 530 VGLTAS------IKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAI 603 (915)
T ss_pred ccccch------hhhcccccCcccccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEE
Confidence 111110 000000000000 00001235789999999999999999999999853 246678
Q ss_pred EEEecCCc-------------ccchhhhcceeE--EEecCCChHHHHHHHHHH
Q 021660 175 ALICNQVN-------------KIIPALQSRCTR--FRFAPLEPVHVTERLKHV 212 (309)
Q Consensus 175 i~~~~~~~-------------~l~~~l~~r~~~--i~~~~~~~~~~~~~l~~~ 212 (309)
|.++|... .+++.+.+||.. +-+..++.+.-..+..++
T Consensus 604 IAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI 656 (915)
T PTZ00111 604 LASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSI 656 (915)
T ss_pred EEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHH
Confidence 88887531 467899999933 445555554444443333
No 235
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.16 E-value=1.8e-08 Score=99.29 Aligned_cols=187 Identities=14% Similarity=0.181 Sum_probs=121.4
Q ss_pred CCCCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHH
Q 021660 48 RPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQD 127 (309)
Q Consensus 48 ~p~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (309)
.|....+++-++...+.+... ...+.++|+||+|+||||++..++... + ...++.++..++.....+...+..
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~~---~-~~~w~~l~~~d~~~~~f~~~l~~~ 81 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAGK---N-NLGWYSLDESDNQPERFASYLIAA 81 (903)
T ss_pred CCCCccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHhC---C-CeEEEecCcccCCHHHHHHHHHHH
Confidence 355567888899888887643 233559999999999999999998654 2 344555554443322111111111
Q ss_pred hhhccc--------------------------cccCCCCccEEEEEeCCCCCCHHH-HHHHHHHHHHhcCCceEEEEecC
Q 021660 128 FASTQS--------------------------FSFGVKASVKLVLLDEADAMTKDA-QFALRRVIEKYTKNTRFALICNQ 180 (309)
Q Consensus 128 ~~~~~~--------------------------~~~~~~~~~~lliiDe~~~l~~~~-~~~l~~~l~~~~~~~~~i~~~~~ 180 (309)
+..... ..+.....+.+|||||+|.+.... ...+..++...+++..+|+++..
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~ 161 (903)
T PRK04841 82 LQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRN 161 (903)
T ss_pred HHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 110000 000111367899999999997544 45777888888888888888765
Q ss_pred Cccc-chhhhcc--eeEEEec--CCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHH
Q 021660 181 VNKI-IPALQSR--CTRFRFA--PLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQ 244 (309)
Q Consensus 181 ~~~l-~~~l~~r--~~~i~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~ 244 (309)
...+ ...+.-+ +..+... +++.+|...++...+ |..++++.+..+.+.++|.|-.+.-...
T Consensus 162 ~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~---~~~~~~~~~~~l~~~t~Gwp~~l~l~~~ 227 (903)
T PRK04841 162 LPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRL---SSPIEAAESSRLCDDVEGWATALQLIAL 227 (903)
T ss_pred CCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhcc---CCCCCHHHHHHHHHHhCChHHHHHHHHH
Confidence 4333 2223222 2334444 889999999887654 7789999999999999999977654443
No 236
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.16 E-value=6.9e-09 Score=86.90 Aligned_cols=205 Identities=18% Similarity=0.152 Sum_probs=133.6
Q ss_pred CccccccChHHHHHHHHHHhcCCCC--eEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHh
Q 021660 51 SLADVAAHRDIVDTIDRLTSENRLP--HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDF 128 (309)
Q Consensus 51 ~~~~~ig~~~~~~~l~~~~~~~~~~--~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (309)
.|+.+++....++.+......-.+- .++|.|.+||||..+|+++.... ......|..++|...... ...+.+...
T Consensus 202 ~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S--~R~~~pFlalNCA~lPe~-~aEsElFG~ 278 (511)
T COG3283 202 GFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLAS--PRHSKPFLALNCASLPED-AAESELFGH 278 (511)
T ss_pred chHHHhhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhcC--cccCCCeeEeecCCCchh-HhHHHHhcC
Confidence 4888999988888777666554332 29999999999999999876553 233567788888764322 222222211
Q ss_pred hh--ccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCceEEEEecCC-------cccchhh
Q 021660 129 AS--TQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV-------NKIIPAL 188 (309)
Q Consensus 129 ~~--~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~~i~~~~~~-------~~l~~~l 188 (309)
.. .....+-..++++.+++||+..+++..+..|+..+++-. .++++|.+|... .+.-+.+
T Consensus 279 apg~~gk~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDL 358 (511)
T COG3283 279 APGDEGKKGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELVQKGKFREDL 358 (511)
T ss_pred CCCCCCccchhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHHHhcCchHHHH
Confidence 11 111112233467789999999999999999999998532 345666665321 2344566
Q ss_pred hcceeEEEecCCChH----H----HHHHHHHHHHHcCC---CCCHHHHHHHHHH-hcCCHHHHHHHHHHHHhhc--CCcC
Q 021660 189 QSRCTRFRFAPLEPV----H----VTERLKHVIEAEGL---DVTEGGLAALVRL-CNGDMRKALNILQSTHMAS--QQIT 254 (309)
Q Consensus 189 ~~r~~~i~~~~~~~~----~----~~~~l~~~~~~~~~---~~~~~~l~~i~~~-~~g~~r~~~~~l~~~~~~~--~~i~ 254 (309)
.-|..++.+.-|+.. + ...++.+.+.+.++ .++++.+..+.++ ++||+|.+.|.+-.++... ..++
T Consensus 359 fyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N~iyRA~s~~Eg~~l~ 438 (511)
T COG3283 359 FYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNAIYRALTLLEGYELR 438 (511)
T ss_pred HHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccHHHHHHHHHHHHHHhccCccc
Confidence 677655544444422 2 23456666667666 4788888888886 5899999999997776543 3444
Q ss_pred HHHH
Q 021660 255 EEAV 258 (309)
Q Consensus 255 ~~~v 258 (309)
.+++
T Consensus 439 i~~i 442 (511)
T COG3283 439 IEDI 442 (511)
T ss_pred hhhc
Confidence 4443
No 237
>PRK12377 putative replication protein; Provisional
Probab=99.15 E-value=2.5e-10 Score=93.75 Aligned_cols=130 Identities=20% Similarity=0.295 Sum_probs=75.4
Q ss_pred cCCCCccccc----cChHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHH
Q 021660 47 YRPQSLADVA----AHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDV 120 (309)
Q Consensus 47 ~~p~~~~~~i----g~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (309)
+...+|+.+. |+..++..+..+.... ...+++|+||||+|||+|+.++++.+...+..+.++.+. + -...
T Consensus 68 ~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~--~--l~~~ 143 (248)
T PRK12377 68 HRKCSFANYQVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP--D--VMSR 143 (248)
T ss_pred cccCCcCCcccCChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHH--H--HHHH
Confidence 3333455554 3344555555554421 234699999999999999999999997665554443322 1 1111
Q ss_pred HHHHHHHhhhccccccCCCCccEEEEEeCC--CCCCHHHHHHHHHHHHHhcC-CceEEEEecCC
Q 021660 121 VRQQIQDFASTQSFSFGVKASVKLVLLDEA--DAMTKDAQFALRRVIEKYTK-NTRFALICNQV 181 (309)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~lliiDe~--~~l~~~~~~~l~~~l~~~~~-~~~~i~~~~~~ 181 (309)
+....... ......+.......+|||||+ +..++.....|+.+++.... ..+.|++||..
T Consensus 144 l~~~~~~~-~~~~~~l~~l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~ 206 (248)
T PRK12377 144 LHESYDNG-QSGEKFLQELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLN 206 (248)
T ss_pred HHHHHhcc-chHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 11111000 000000111125679999999 45566678899999997554 46778888754
No 238
>PRK08181 transposase; Validated
Probab=99.15 E-value=3e-10 Score=94.46 Aligned_cols=107 Identities=21% Similarity=0.283 Sum_probs=65.9
Q ss_pred HHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhccc--cccCCCCcc
Q 021660 65 IDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQS--FSFGVKASV 142 (309)
Q Consensus 65 l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 142 (309)
+..|+..+ .+++|+||+|+|||+|+.++++++...+..+.++.. . .+...+........ ..+......
T Consensus 99 ~~~~~~~~--~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~--~------~L~~~l~~a~~~~~~~~~l~~l~~~ 168 (269)
T PRK08181 99 GDSWLAKG--ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRT--T------DLVQKLQVARRELQLESAIAKLDKF 168 (269)
T ss_pred HHHHHhcC--ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeH--H------HHHHHHHHHHhCCcHHHHHHHHhcC
Confidence 33566543 569999999999999999999988666655544432 1 11111111000000 000001146
Q ss_pred EEEEEeCCCCCC--HHHHHHHHHHHHHhcCCceEEEEecCC
Q 021660 143 KLVLLDEADAMT--KDAQFALRRVIEKYTKNTRFALICNQV 181 (309)
Q Consensus 143 ~lliiDe~~~l~--~~~~~~l~~~l~~~~~~~~~i~~~~~~ 181 (309)
.+|||||++... ......|+++++.......+|+++|..
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 799999998775 344678999999765556788888754
No 239
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.13 E-value=2.2e-10 Score=86.31 Aligned_cols=125 Identities=18% Similarity=0.229 Sum_probs=77.6
Q ss_pred ccChHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhccc
Q 021660 56 AAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQS 133 (309)
Q Consensus 56 ig~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (309)
||....++.+.+.+..- ....++|+|++|+||+++|+.+...... ....++.+++.... .+.+...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~--~~~~~~~~~~~~~~-----~~~l~~a----- 68 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGR--ANGPFIVIDCASLP-----AELLEQA----- 68 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTT--CCS-CCCCCHHCTC-----HHHHHHC-----
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCc--cCCCeEEechhhCc-----HHHHHHc-----
Confidence 46666666666655432 2234999999999999999999886522 22233333333321 1222221
Q ss_pred cccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHh-cCCceEEEEecCCc-------ccchhhhcce--eEEEecC
Q 021660 134 FSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-TKNTRFALICNQVN-------KIIPALQSRC--TRFRFAP 199 (309)
Q Consensus 134 ~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~~-------~l~~~l~~r~--~~i~~~~ 199 (309)
.+..|+|+|++.++.+.+..|..+++.. ..++++|++++... .+.+.+..++ ..+.++|
T Consensus 69 -------~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~~~~i~lPp 137 (138)
T PF14532_consen 69 -------KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFSPDLYYRLSQLEIHLPP 137 (138)
T ss_dssp -------TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHHHHHHHHCSTCEEEE--
T ss_pred -------CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchhHHHHHHhCCCEEeCCC
Confidence 4678999999999999999999999965 45778888875332 3445666665 5566655
No 240
>PRK06526 transposase; Provisional
Probab=99.13 E-value=2.5e-10 Score=94.49 Aligned_cols=122 Identities=13% Similarity=0.153 Sum_probs=72.1
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhccc--cccCCCCccEEEEEeCCC
Q 021660 74 LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQS--FSFGVKASVKLVLLDEAD 151 (309)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lliiDe~~ 151 (309)
..+++|+||||+|||+++.+++.++...+..+.+.... .+...+........ ..+....+..+|||||++
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~--------~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g 169 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAA--------QWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVG 169 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHH--------HHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccc
Confidence 35699999999999999999999886555554332111 11111111000000 000111246799999999
Q ss_pred CCC--HHHHHHHHHHHHHhcCCceEEEEecCCcc--------------cchhhhcceeEEEecCCChH
Q 021660 152 AMT--KDAQFALRRVIEKYTKNTRFALICNQVNK--------------IIPALQSRCTRFRFAPLEPV 203 (309)
Q Consensus 152 ~l~--~~~~~~l~~~l~~~~~~~~~i~~~~~~~~--------------l~~~l~~r~~~i~~~~~~~~ 203 (309)
.+. ....+.|+.+++....+..+|+++|.... +...+...+.++.|...+..
T Consensus 170 ~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~w~~~~~d~~~a~ai~dRl~~~~~~i~~~g~s~R 237 (254)
T PRK06526 170 YIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVISLKGDSYR 237 (254)
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHHHHHHcCChHHHHHHHHHHhcCceEEeecCCCcc
Confidence 775 55667889998865545568888875431 11223333566777766544
No 241
>PRK08116 hypothetical protein; Validated
Probab=99.11 E-value=1.7e-09 Score=90.45 Aligned_cols=153 Identities=16% Similarity=0.178 Sum_probs=84.9
Q ss_pred hcCCCCccccccC---hHHHHHHHHHHhc----C-CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcc
Q 021660 46 KYRPQSLADVAAH---RDIVDTIDRLTSE----N-RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG 117 (309)
Q Consensus 46 ~~~p~~~~~~ig~---~~~~~~l~~~~~~----~-~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 117 (309)
++.-.+|+.+... ..++..+.+++.. . ....++|+|++|+|||+|+.++++.+...+..+ +.++... -
T Consensus 78 ~~~~~tFdnf~~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v--~~~~~~~--l 153 (268)
T PRK08116 78 KFRNSTFENFLFDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPV--IFVNFPQ--L 153 (268)
T ss_pred HHHhcchhcccCChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeE--EEEEHHH--H
Confidence 4444456655432 2334444544442 1 122399999999999999999999986554333 3333221 0
Q ss_pred hHHHHHHHHHhhhccc-cccCCCCccEEEEEeCC--CCCCHHHHHHHHHHHHHh-cCCceEEEEecCCcc-----cchhh
Q 021660 118 IDVVRQQIQDFASTQS-FSFGVKASVKLVLLDEA--DAMTKDAQFALRRVIEKY-TKNTRFALICNQVNK-----IIPAL 188 (309)
Q Consensus 118 ~~~~~~~~~~~~~~~~-~~~~~~~~~~lliiDe~--~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~~~-----l~~~l 188 (309)
...+............ ..+....+..+|+|||+ +......+..|+.+++.. ....++|++||.... +...+
T Consensus 154 l~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~~~~~~ri 233 (268)
T PRK08116 154 LNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELKNQYGKRI 233 (268)
T ss_pred HHHHHHHHhccccccHHHHHHHhcCCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHH
Confidence 1111111100000000 00000114569999999 455666778899999964 345678888876532 34456
Q ss_pred hcc----eeEEEecCCCh
Q 021660 189 QSR----CTRFRFAPLEP 202 (309)
Q Consensus 189 ~~r----~~~i~~~~~~~ 202 (309)
.+| +..+.+..++.
T Consensus 234 ~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 234 YDRILEMCTPVENEGKSY 251 (268)
T ss_pred HHHHHHcCEEEEeeCcCh
Confidence 666 56677776663
No 242
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.11 E-value=2.1e-09 Score=91.89 Aligned_cols=93 Identities=11% Similarity=0.025 Sum_probs=67.0
Q ss_pred CCccEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCceEEEEecCC-------cccchhhhcceeEEEecCC
Q 021660 139 KASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV-------NKIIPALQSRCTRFRFAPL 200 (309)
Q Consensus 139 ~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~~i~~~~~~-------~~l~~~l~~r~~~i~~~~~ 200 (309)
+++++++-++|+.+...+..+.|+.++++.. -+..||+++|.. .+..+++++||..+.++-+
T Consensus 234 ~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~~~i~vpY~ 313 (361)
T smart00763 234 RANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRIIKVKVPYC 313 (361)
T ss_pred cccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhceEEEeCCCc
Confidence 3577899999999999999999999999521 234566677765 2557899999988887655
Q ss_pred C-hHHHHHHHHHHHHHc---CCCCCHHHHHHHHHH
Q 021660 201 E-PVHVTERLKHVIEAE---GLDVTEGGLAALVRL 231 (309)
Q Consensus 201 ~-~~~~~~~l~~~~~~~---~~~~~~~~l~~i~~~ 231 (309)
. ..+-.++.++.+... +..+.+.+++.++..
T Consensus 314 l~~~~E~~Iy~k~~~~s~~~~~~~aP~~le~aa~~ 348 (361)
T smart00763 314 LRVSEEAQIYEKLLRNSDLTEAHIAPHTLEMAALF 348 (361)
T ss_pred CCHHHHHHHHHHHhccCcCcccccCchHHHHHHHH
Confidence 4 456667777776543 455677776665554
No 243
>PF05729 NACHT: NACHT domain
Probab=99.10 E-value=1.7e-09 Score=84.07 Aligned_cols=138 Identities=14% Similarity=0.194 Sum_probs=82.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCcccc----cEEEEecCCCcch---HHHHHHHHHhhhccccc-------cCCCCcc
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQYHN----MILELNASDDRGI---DVVRQQIQDFASTQSFS-------FGVKASV 142 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-------~~~~~~~ 142 (309)
++|+|++|+|||++++.++..+....... .++.+........ ..+...+.......... ......+
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNKR 82 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCCc
Confidence 79999999999999999999986554322 1222222221111 12222222211111100 1112357
Q ss_pred EEEEEeCCCCCCHHHH--------HHHHHHHHH-hcCCceEEEEecCCcc-cchhhhcceeEEEecCCChHHHHHHHHHH
Q 021660 143 KLVLLDEADAMTKDAQ--------FALRRVIEK-YTKNTRFALICNQVNK-IIPALQSRCTRFRFAPLEPVHVTERLKHV 212 (309)
Q Consensus 143 ~lliiDe~~~l~~~~~--------~~l~~~l~~-~~~~~~~i~~~~~~~~-l~~~l~~r~~~i~~~~~~~~~~~~~l~~~ 212 (309)
.+++||.+|.+..... ..|..++.. .+++..++++++.... -..........+.+.+++.+++..++++.
T Consensus 83 ~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (166)
T PF05729_consen 83 VLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLRKY 162 (166)
T ss_pred eEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHHHH
Confidence 7899999999875322 345566665 4557778877764432 12222233367899999999999999987
Q ss_pred HH
Q 021660 213 IE 214 (309)
Q Consensus 213 ~~ 214 (309)
++
T Consensus 163 f~ 164 (166)
T PF05729_consen 163 FS 164 (166)
T ss_pred hh
Confidence 64
No 244
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.10 E-value=3.2e-08 Score=89.55 Aligned_cols=204 Identities=15% Similarity=0.159 Sum_probs=127.4
Q ss_pred ccccChHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhc
Q 021660 54 DVAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAST 131 (309)
Q Consensus 54 ~~ig~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (309)
.++|....+..+...+..- ....++++|++|+||+++++.+..... .....++.++|.... ...+.+.+......
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~--~~~~~~i~~~c~~~~-~~~~~~~lfg~~~~ 216 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSA--RSEKPLVTLNCAALN-ESLLESELFGHEKG 216 (441)
T ss_pred ceEecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCC--CCCCCeeeeeCCCCC-HHHHHHHhcCCCCC
Confidence 3556555555444333322 223499999999999999999977642 234678888888643 23333322211100
Q ss_pred c-------ccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCceEEEEecCCc-------ccch
Q 021660 132 Q-------SFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQVN-------KIIP 186 (309)
Q Consensus 132 ~-------~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~~i~~~~~~~-------~l~~ 186 (309)
. ....-..++++.|+|||++.++...+..|+.+++... .++++|++++... ...+
T Consensus 217 ~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~ 296 (441)
T PRK10365 217 AFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQ 296 (441)
T ss_pred CcCCCCcCCCCceeECCCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchH
Confidence 0 0001122357889999999999999999999998632 2346777765432 2334
Q ss_pred hhhccee--EEEecCCCh--HHHHHHHHHHHHH----cC---CCCCHHHHHHHHHHh-cCCHHHHHHHHHHHHhhc--CC
Q 021660 187 ALQSRCT--RFRFAPLEP--VHVTERLKHVIEA----EG---LDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS--QQ 252 (309)
Q Consensus 187 ~l~~r~~--~i~~~~~~~--~~~~~~l~~~~~~----~~---~~~~~~~l~~i~~~~-~g~~r~~~~~l~~~~~~~--~~ 252 (309)
.+..++. .+.++|+.. +++..++...+.+ .+ ..+++++++.+..+. +||+|.+.+.++.+.... ..
T Consensus 297 ~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~~~~~ 376 (441)
T PRK10365 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGEY 376 (441)
T ss_pred HHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCc
Confidence 4555553 345555542 3555555444443 23 348999999999987 899999999999877643 45
Q ss_pred cCHHHHHh
Q 021660 253 ITEEAVYL 260 (309)
Q Consensus 253 i~~~~v~~ 260 (309)
|+.+++..
T Consensus 377 i~~~~l~~ 384 (441)
T PRK10365 377 ISERELPL 384 (441)
T ss_pred cchHhCch
Confidence 77776643
No 245
>PF14516 AAA_35: AAA-like domain
Probab=99.10 E-value=8.2e-08 Score=83.06 Aligned_cols=231 Identities=13% Similarity=0.160 Sum_probs=139.9
Q ss_pred ccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCC---cchHHHHHH-HHHhh
Q 021660 54 DVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD---RGIDVVRQQ-IQDFA 129 (309)
Q Consensus 54 ~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~ 129 (309)
-.|.++.+-+.+.+.+... ...+.|.||..+|||+++..+.+.+...++...++.+..... ...+.+... ...+.
T Consensus 12 ~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~ 90 (331)
T PF14516_consen 12 FYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEIS 90 (331)
T ss_pred cccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHH
Confidence 3566776666666666552 135999999999999999999999977766665555554322 111111111 11110
Q ss_pred hcccc-------------------------ccCCCCccEEEEEeCCCCCCH--HHHHHHHHHHHHh----c-----CCce
Q 021660 130 STQSF-------------------------SFGVKASVKLVLLDEADAMTK--DAQFALRRVIEKY----T-----KNTR 173 (309)
Q Consensus 130 ~~~~~-------------------------~~~~~~~~~lliiDe~~~l~~--~~~~~l~~~l~~~----~-----~~~~ 173 (309)
..... .+.....+-||+|||+|.+.. .....++..+..- . .+.+
T Consensus 91 ~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~ 170 (331)
T PF14516_consen 91 RQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLR 170 (331)
T ss_pred HHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEE
Confidence 00000 001113678999999999875 3334455555431 1 2344
Q ss_pred EEEEecCCcccchhh-hcc---eeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 021660 174 FALICNQVNKIIPAL-QSR---CTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA 249 (309)
Q Consensus 174 ~i~~~~~~~~l~~~l-~~r---~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~ 249 (309)
+|++......+.... .+. +..+.+++.+.+|+..+++++ +...++..++.|...++|.|.-+..++..++.
T Consensus 171 li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~----~~~~~~~~~~~l~~~tgGhP~Lv~~~~~~l~~- 245 (331)
T PF14516_consen 171 LILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRY----GLEFSQEQLEQLMDWTGGHPYLVQKACYLLVE- 245 (331)
T ss_pred EEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhh----hccCCHHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 555543222122221 222 356889999999998877655 77888888999999999999888888888766
Q ss_pred cCCcCHHHHH-hhhC--CCChHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 021660 250 SQQITEEAVY-LCTG--NPLPKDIEQISYWLLNESFADSFKRISEMK 293 (309)
Q Consensus 250 ~~~i~~~~v~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 293 (309)
..++.+.+- .+.. ....+.+..+++.+.. + .+....+++++
T Consensus 246 -~~~~~~~l~~~a~~~~~~~~~hL~~l~~~L~~-~-~~L~~~~~~il 289 (331)
T PF14516_consen 246 -EQITLEQLLEEAITDNGIYNDHLDRLLDRLQQ-N-PELLEAYQQIL 289 (331)
T ss_pred -ccCcHHHHHHHHHHhcccHHHHHHHHHHHHcc-C-HHHHHHHHHHH
Confidence 345555443 2222 2223456666666633 2 37778888888
No 246
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=8.6e-10 Score=96.50 Aligned_cols=160 Identities=22% Similarity=0.265 Sum_probs=103.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCC------CcchHHHHHHHHHhhhccccccCCCCccEEEEEeCC
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD------DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEA 150 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~ 150 (309)
++||||||||||.+|+.+.+-++...+.+ ++.+. ..+.+.++..+.+..+.... .+...+-.+||+||+
T Consensus 259 iLLyGPPGTGKTLiARqIGkMLNArePKI----VNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~-~g~~SgLHIIIFDEi 333 (744)
T KOG0741|consen 259 ILLYGPPGTGKTLIARQIGKMLNAREPKI----VNGPEILNKYVGESEENVRKLFADAEEEQRR-LGANSGLHIIIFDEI 333 (744)
T ss_pred EEEECCCCCChhHHHHHHHHHhcCCCCcc----cCcHHHHHHhhcccHHHHHHHHHhHHHHHHh-hCccCCceEEEehhh
Confidence 99999999999999999999996654322 12211 12233455555544433332 444446789999999
Q ss_pred CCCCH-------------HHHHHHHHHHHHhc--CCceEEEEecCCcccchhhhcce---eEEEecCCChHHHHHHHHHH
Q 021660 151 DAMTK-------------DAQFALRRVIEKYT--KNTRFALICNQVNKIIPALQSRC---TRFRFAPLEPVHVTERLKHV 212 (309)
Q Consensus 151 ~~l~~-------------~~~~~l~~~l~~~~--~~~~~i~~~~~~~~l~~~l~~r~---~~i~~~~~~~~~~~~~l~~~ 212 (309)
|.+++ ...+.|+.-|+... .+..+|..||..+.++++|++.. ...++.-|+..-..+|++-+
T Consensus 334 DAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IH 413 (744)
T KOG0741|consen 334 DAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIH 413 (744)
T ss_pred HHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhh
Confidence 98864 23577777766432 36678888999999999998854 33666677776666655443
Q ss_pred H---HHcCCCCCHHHHHHHHHHhcCCHHHHHH
Q 021660 213 I---EAEGLDVTEGGLAALVRLCNGDMRKALN 241 (309)
Q Consensus 213 ~---~~~~~~~~~~~l~~i~~~~~g~~r~~~~ 241 (309)
- +..+.--++-.++.|+.++...-+.-+.
T Consensus 414 T~rMre~~~l~~dVdl~elA~lTKNfSGAEle 445 (744)
T KOG0741|consen 414 TKRMRENNKLSADVDLKELAALTKNFSGAELE 445 (744)
T ss_pred hhhhhhcCCCCCCcCHHHHHHHhcCCchhHHH
Confidence 3 3334333455678888887543333333
No 247
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=99.07 E-value=3.4e-08 Score=79.37 Aligned_cols=187 Identities=19% Similarity=0.223 Sum_probs=119.2
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhccccc--
Q 021660 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFS-- 135 (309)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 135 (309)
+.+.+..+...+..++. .+.++|+-|+|||.+.+++...+.... ...+.++.............+..+...+...
T Consensus 36 h~e~l~~l~~~i~d~qg-~~~vtGevGsGKTv~~Ral~~s~~~d~--~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~ 112 (269)
T COG3267 36 HNEALLMLHAAIADGQG-ILAVTGEVGSGKTVLRRALLASLNEDQ--VAVVVIDKPTLSDATLLEAIVADLESQPKVNVN 112 (269)
T ss_pred hhHHHHHHHHHHhcCCc-eEEEEecCCCchhHHHHHHHHhcCCCc--eEEEEecCcchhHHHHHHHHHHHhccCccchhH
Confidence 56777788877777652 489999999999999996666654222 2223333333222221222222211100000
Q ss_pred -------------cCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc---CCceEEEEecCC------cccchhhhccee
Q 021660 136 -------------FGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT---KNTRFALICNQV------NKIIPALQSRCT 193 (309)
Q Consensus 136 -------------~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~---~~~~~i~~~~~~------~~l~~~l~~r~~ 193 (309)
......+.++++||++.+..+..+.|.-+.+.-. ....+++++-.. ......+..|+.
T Consensus 113 ~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ 192 (269)
T COG3267 113 AVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRID 192 (269)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEE
Confidence 1111245799999999999888777666655322 222344444211 112345677885
Q ss_pred E-EEecCCChHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 021660 194 R-FRFAPLEPVHVTERLKHVIEAEGLD---VTEGGLAALVRLCNGDMRKALNILQSTH 247 (309)
Q Consensus 194 ~-i~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~l~~i~~~~~g~~r~~~~~l~~~~ 247 (309)
. |.++|++.++...+++.+++..+.. ++++++..+...+.|-|+.+-+.+..+-
T Consensus 193 ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~Al 250 (269)
T COG3267 193 IRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATLAL 250 (269)
T ss_pred EEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHHHH
Confidence 5 9999999999999999999887653 6799999999999998888777765444
No 248
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.06 E-value=4.8e-09 Score=90.13 Aligned_cols=164 Identities=13% Similarity=0.090 Sum_probs=106.3
Q ss_pred CccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCc--------------
Q 021660 51 SLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR-------------- 116 (309)
Q Consensus 51 ~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~-------------- 116 (309)
.|..++|++.....|.-..-..+...+||.|+.|+||||++++++..+.....-. -..++|....
T Consensus 15 pf~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~-gc~f~cdP~~P~~~c~~c~~k~~e 93 (423)
T COG1239 15 PFTAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALADLLPEIEVVI-GCPFNCDPDDPEEMCDECRAKGDE 93 (423)
T ss_pred chhhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHHhCCccceec-CCCCCCCCCChhhhhHHHHhhccc
Confidence 3677999999988877766666677799999999999999999999983211000 0001111100
Q ss_pred --------------------------chHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHH---
Q 021660 117 --------------------------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEK--- 167 (309)
Q Consensus 117 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~--- 167 (309)
+.=.+...+..-.....+.+-.+++++|+.|||+..|....++.|+++++.
T Consensus 94 ~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aaeG~n 173 (423)
T COG1239 94 LEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAEGVN 173 (423)
T ss_pred cccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHHHHHHhCCc
Confidence 000111122211111111222356899999999999999999999999996
Q ss_pred ----------hcCCceEEEEecCC-cccchhhhcce-eEEEecCCC-hHHHHHHHHHHHHH
Q 021660 168 ----------YTKNTRFALICNQV-NKIIPALQSRC-TRFRFAPLE-PVHVTERLKHVIEA 215 (309)
Q Consensus 168 ----------~~~~~~~i~~~~~~-~~l~~~l~~r~-~~i~~~~~~-~~~~~~~l~~~~~~ 215 (309)
++.+..+|.+.|.. ..+-+.|+.|| ..+...++. .++..+++.+.+.-
T Consensus 174 ~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 174 DVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAF 234 (423)
T ss_pred eeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHh
Confidence 23455666666655 46788999998 667766555 46666676666543
No 249
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=8.3e-09 Score=85.13 Aligned_cols=173 Identities=21% Similarity=0.334 Sum_probs=108.5
Q ss_pred ccccChHHHHHHH--------HHHhc-------CCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcc-
Q 021660 54 DVAAHRDIVDTID--------RLTSE-------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG- 117 (309)
Q Consensus 54 ~~ig~~~~~~~l~--------~~~~~-------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~- 117 (309)
-+|||+.+++.+. +.... ....++++.||+|+|||.||+.+|+.+ ++.|..-+++....
T Consensus 62 YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~L-----nVPFaiADATtLTEA 136 (408)
T COG1219 62 YVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKIL-----NVPFAIADATTLTEA 136 (408)
T ss_pred heecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHh-----CCCeeeccccchhhc
Confidence 4678888777432 11111 123469999999999999999999998 66666666654321
Q ss_pred ---hHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH--------------HHHHHHHHHHHHh----cC------
Q 021660 118 ---IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK--------------DAQFALRRVIEKY----TK------ 170 (309)
Q Consensus 118 ---~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~--------------~~~~~l~~~l~~~----~~------ 170 (309)
.+.+...+..+.+...... .++++++++|||+|++.. ..+.+|+++++.. |+
T Consensus 137 GYVGEDVENillkLlqaadydV-~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKH 215 (408)
T COG1219 137 GYVGEDVENILLKLLQAADYDV-ERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKH 215 (408)
T ss_pred cccchhHHHHHHHHHHHcccCH-HHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCC
Confidence 2333444444444333211 234789999999999863 3478999999942 11
Q ss_pred ---------CceEEEEec------------------------CC----------------------cccchhhhcce-eE
Q 021660 171 ---------NTRFALICN------------------------QV----------------------NKIIPALQSRC-TR 194 (309)
Q Consensus 171 ---------~~~~i~~~~------------------------~~----------------------~~l~~~l~~r~-~~ 194 (309)
...++|++. .. ..+.|.+..|+ .+
T Consensus 216 P~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvi 295 (408)
T COG1219 216 PQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVI 295 (408)
T ss_pred CccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhccccee
Confidence 112333330 00 02345666777 55
Q ss_pred EEecCCChHHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHHh
Q 021660 195 FRFAPLEPVHVTERLKH-----------VIEAEGL--DVTEGGLAALVRLC 232 (309)
Q Consensus 195 i~~~~~~~~~~~~~l~~-----------~~~~~~~--~~~~~~l~~i~~~~ 232 (309)
..+.+++.+++..+|.. .+...++ .++++++..|++.+
T Consensus 296 a~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A 346 (408)
T COG1219 296 ATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKA 346 (408)
T ss_pred eehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHH
Confidence 67888998888877543 2223343 57899999999876
No 250
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=99.03 E-value=1e-08 Score=83.92 Aligned_cols=175 Identities=18% Similarity=0.249 Sum_probs=115.6
Q ss_pred cccChHHHHHHHHH----HhcCCCCe---EEEECCCCCcHHHHHHHHHHHHccCcccccEEEE-----ecCCCcchHHHH
Q 021660 55 VAAHRDIVDTIDRL----TSENRLPH---LLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL-----NASDDRGIDVVR 122 (309)
Q Consensus 55 ~ig~~~~~~~l~~~----~~~~~~~~---~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 122 (309)
+.||.-+.+.+.+. +.+..+.. +-|+|++||||+..++.+++.+...+....++.. +.+....++..+
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Yk 163 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDYK 163 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHHH
Confidence 56765555544444 44443322 7789999999999999999999887776665543 233333444444
Q ss_pred HHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc-------CCceEEEEecCCcccc----------
Q 021660 123 QQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-------KNTRFALICNQVNKII---------- 185 (309)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~-------~~~~~i~~~~~~~~l~---------- 185 (309)
..+......... . -.++++|+||+|+|.+...+.|...++..+ .+.++|+.+|......
T Consensus 164 ~eL~~~v~~~v~--~--C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~~~ 239 (344)
T KOG2170|consen 164 EELKNRVRGTVQ--A--CQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIALENARN 239 (344)
T ss_pred HHHHHHHHHHHH--h--cCCceEEechhhhcCHhHHHHHhhhhccccccccccccceEEEEEcCCcchHHHHHHHHHHHc
Confidence 443332221111 1 157899999999999999999998888543 3567888886332110
Q ss_pred -------------hhhh-------------cc------e-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 021660 186 -------------PALQ-------------SR------C-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLC 232 (309)
Q Consensus 186 -------------~~l~-------------~r------~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~ 232 (309)
+.+. ++ . ..|.|-|++...+...++..+.++|...+.+.++.+++..
T Consensus 240 g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~r~el~~rg~~~d~~~~erva~~l 319 (344)
T KOG2170|consen 240 GKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCIRAELRKRGLAPDQDFVERVANSL 319 (344)
T ss_pred CCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHHHHHHHHHHhcccccchHHHHHHHHhh
Confidence 0000 00 1 3377888888889999998888888888888888888765
Q ss_pred c
Q 021660 233 N 233 (309)
Q Consensus 233 ~ 233 (309)
.
T Consensus 320 ~ 320 (344)
T KOG2170|consen 320 S 320 (344)
T ss_pred c
Confidence 4
No 251
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.02 E-value=1.5e-09 Score=88.99 Aligned_cols=129 Identities=15% Similarity=0.257 Sum_probs=76.2
Q ss_pred hhcCCCCcccccc----ChHHHHHHHHHHhcCC--CCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcch
Q 021660 45 EKYRPQSLADVAA----HRDIVDTIDRLTSENR--LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 118 (309)
Q Consensus 45 ~~~~p~~~~~~ig----~~~~~~~l~~~~~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 118 (309)
+.|+..+|+.+.. +..++..+.+++.... ..+++|+|++|+|||+|+.++++.+...+..+.++. ..
T Consensus 64 ~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it--~~----- 136 (244)
T PRK07952 64 PLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT--VA----- 136 (244)
T ss_pred ccccCCccccccCCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE--HH-----
Confidence 4455566766653 3446666666665432 235999999999999999999999976555444442 21
Q ss_pred HHHHHHHHHhhhccc----cccCCCCccEEEEEeCCCCCCHH--HHHHHHHHHHHh-cCCceEEEEecCC
Q 021660 119 DVVRQQIQDFASTQS----FSFGVKASVKLVLLDEADAMTKD--AQFALRRVIEKY-TKNTRFALICNQV 181 (309)
Q Consensus 119 ~~~~~~~~~~~~~~~----~~~~~~~~~~lliiDe~~~l~~~--~~~~l~~~l~~~-~~~~~~i~~~~~~ 181 (309)
.+...+........ ..+.......+|+|||++..... ....|..+++.. .....+|++||..
T Consensus 137 -~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~ 205 (244)
T PRK07952 137 -DIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSN 205 (244)
T ss_pred -HHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCC
Confidence 11111111000000 00000114679999999876532 345788888854 3466788888754
No 252
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=99.02 E-value=3.5e-09 Score=95.26 Aligned_cols=138 Identities=17% Similarity=0.235 Sum_probs=88.7
Q ss_pred cccccChHHHHHHHHHHhcCC---------C---CeEEEECCCCCcHHHHHHHHHHHHccCcc----cc------cEEEE
Q 021660 53 ADVAAHRDIVDTIDRLTSENR---------L---PHLLLYGPPGTGKTSTILAVARKLYGAQY----HN------MILEL 110 (309)
Q Consensus 53 ~~~ig~~~~~~~l~~~~~~~~---------~---~~~ll~G~~G~GKT~l~~~l~~~~~~~~~----~~------~~~~~ 110 (309)
.++.|++.+++.+.-.+.++. . -|+||+|-||+|||.+++.+.+.+....+ +. .++..
T Consensus 429 PsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtr 508 (804)
T KOG0478|consen 429 PSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTK 508 (804)
T ss_pred hhhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEe
Confidence 367788888886665554431 1 24999999999999999999888743211 00 11111
Q ss_pred ecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHh-------------cCCceEEEE
Q 021660 111 NASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-------------TKNTRFALI 177 (309)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~-------------~~~~~~i~~ 177 (309)
+.... +. ..++....++ ..+++.|||+|+++...+..|.++|+.. +..+.|+.+
T Consensus 509 d~dtk-------ql---VLesGALVLS---D~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAa 575 (804)
T KOG0478|consen 509 DPDTR-------QL---VLESGALVLS---DNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAA 575 (804)
T ss_pred cCccc-------ee---eeecCcEEEc---CCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeee
Confidence 11110 00 1111111122 5789999999999999999999999962 456778888
Q ss_pred ecCCc-------------ccchhhhcceeE--EEecCCChH
Q 021660 178 CNQVN-------------KIIPALQSRCTR--FRFAPLEPV 203 (309)
Q Consensus 178 ~~~~~-------------~l~~~l~~r~~~--i~~~~~~~~ 203 (309)
+|... .+++.|++||.. +-+.+++..
T Consensus 576 ANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 576 ANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDER 616 (804)
T ss_pred eccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchh
Confidence 87432 467899999944 445666544
No 253
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.97 E-value=1.7e-08 Score=75.99 Aligned_cols=95 Identities=28% Similarity=0.333 Sum_probs=56.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCc--------------------chHHHHHHHHHhhhcccc
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR--------------------GIDVVRQQIQDFASTQSF 134 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~ 134 (309)
.+++|+||||+|||++++.++..+..... .++.++..... ...... ........
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--- 76 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGG--GVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLR-LALALARK--- 76 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCC--CEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHH-HHHHHHHh---
Confidence 46999999999999999999999854431 23333333211 111111 11111111
Q ss_pred ccCCCCccEEEEEeCCCCCCHHHHHHHHH--------HHHHhcCCceEEEEecC
Q 021660 135 SFGVKASVKLVLLDEADAMTKDAQFALRR--------VIEKYTKNTRFALICNQ 180 (309)
Q Consensus 135 ~~~~~~~~~lliiDe~~~l~~~~~~~l~~--------~l~~~~~~~~~i~~~~~ 180 (309)
..+.+|++||++.+.......... ..........+|+++|.
T Consensus 77 -----~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 77 -----LKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred -----cCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 024899999999998665444332 22234446677777775
No 254
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=6.4e-09 Score=90.66 Aligned_cols=47 Identities=30% Similarity=0.459 Sum_probs=42.6
Q ss_pred CCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHH
Q 021660 50 QSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 50 ~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
..|.|++||+..++.+.-...++ .+++++||||||||+++..+..-+
T Consensus 176 ~D~~DV~GQ~~AKrAleiAAAGg--HnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAAAGG--HNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred cchhhhcCcHHHHHHHHHHHhcC--CcEEEecCCCCchHHhhhhhcccC
Confidence 36899999999999999999887 569999999999999999987776
No 255
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.96 E-value=3e-09 Score=97.84 Aligned_cols=145 Identities=20% Similarity=0.225 Sum_probs=88.6
Q ss_pred ccccccChHHHHHHHHHHhcCCC------------CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcch-
Q 021660 52 LADVAAHRDIVDTIDRLTSENRL------------PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI- 118 (309)
Q Consensus 52 ~~~~ig~~~~~~~l~~~~~~~~~------------~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~- 118 (309)
...+.|++.+++.+.-.+.++.. -|+||.|-||+|||+|.+.+++... ...+.....+...+.
T Consensus 285 aPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aP----r~vytsgkgss~~GLT 360 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAP----RGVYTSGKGSSAAGLT 360 (682)
T ss_pred cccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCC----ceEEEccccccccCce
Confidence 45778899988877766654411 2499999999999999999998862 222222222211111
Q ss_pred -HHHHHHH--HHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHh-------------cCCceEEEEecCCc
Q 021660 119 -DVVRQQI--QDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-------------TKNTRFALICNQVN 182 (309)
Q Consensus 119 -~~~~~~~--~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~-------------~~~~~~i~~~~~~~ 182 (309)
...+... ....+.....+ +.+++++|||+|++.......|.++|+.. +..+.+++++|+..
T Consensus 361 Aav~rd~~tge~~LeaGALVl---AD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~ 437 (682)
T COG1241 361 AAVVRDKVTGEWVLEAGALVL---ADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKF 437 (682)
T ss_pred eEEEEccCCCeEEEeCCEEEE---ecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCC
Confidence 0011111 00111111212 25889999999999999999999999963 23445555555432
Q ss_pred -------------ccchhhhcceeEEE--ecCCChH
Q 021660 183 -------------KIIPALQSRCTRFR--FAPLEPV 203 (309)
Q Consensus 183 -------------~l~~~l~~r~~~i~--~~~~~~~ 203 (309)
.+++.+.+||..+. ...++.+
T Consensus 438 Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~ 473 (682)
T COG1241 438 GRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEE 473 (682)
T ss_pred CcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCcc
Confidence 46788999994433 3444443
No 256
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.96 E-value=2.1e-07 Score=86.40 Aligned_cols=183 Identities=17% Similarity=0.215 Sum_probs=122.2
Q ss_pred cCCCCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHH
Q 021660 47 YRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQ 126 (309)
Q Consensus 47 ~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (309)
.+|......+-++...+.+.+... ...++|+.|.|.||||++-.++. ....+..+.+..++.+++.........+.
T Consensus 13 ~~P~~~~~~v~R~rL~~~L~~~~~---~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde~dndp~rF~~yLi~ 88 (894)
T COG2909 13 VRPVRPDNYVVRPRLLDRLRRAND---YRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDESDNDPARFLSYLIA 88 (894)
T ss_pred CCCCCcccccccHHHHHHHhcCCC---ceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecCCccCCHHHHHHHHHH
Confidence 456666777777777766654322 23499999999999999999988 55667777788787777543332222222
Q ss_pred Hhhhcccc--------------------------ccCCCCccEEEEEeCCCCCCHHH-HHHHHHHHHHhcCCceEEEEec
Q 021660 127 DFASTQSF--------------------------SFGVKASVKLVLLDEADAMTKDA-QFALRRVIEKYTKNTRFALICN 179 (309)
Q Consensus 127 ~~~~~~~~--------------------------~~~~~~~~~lliiDe~~~l~~~~-~~~l~~~l~~~~~~~~~i~~~~ 179 (309)
......+. .+..-.++..+||||.+.+.... ...+-.+++..|++..+|++|.
T Consensus 89 al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR 168 (894)
T COG2909 89 ALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSR 168 (894)
T ss_pred HHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEec
Confidence 21111110 01122357799999999998655 5667778888898999999996
Q ss_pred CCccc-chhhhcceeEEEe----cCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCH
Q 021660 180 QVNKI-IPALQSRCTRFRF----APLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDM 236 (309)
Q Consensus 180 ~~~~l-~~~l~~r~~~i~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~ 236 (309)
..+.+ ...++-|-..+++ -.++.+|..+++.... +..++...+..+.++++|=+
T Consensus 169 ~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~---~l~Ld~~~~~~L~~~teGW~ 227 (894)
T COG2909 169 SRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRG---SLPLDAADLKALYDRTEGWA 227 (894)
T ss_pred cCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcC---CCCCChHHHHHHHhhcccHH
Confidence 65543 2333333222222 3467788888887763 48899999999999999844
No 257
>PRK09183 transposase/IS protein; Provisional
Probab=98.95 E-value=3.9e-09 Score=87.90 Aligned_cols=97 Identities=20% Similarity=0.249 Sum_probs=58.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHH-----HHHhhhccccccCCCCccEEEEEeC
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQ-----IQDFASTQSFSFGVKASVKLVLLDE 149 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~lliiDe 149 (309)
.+++|+||+|+|||+++.+++......+..+.++. .... ...+... +....... .....+++|||
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~--~~~l--~~~l~~a~~~~~~~~~~~~~------~~~~dlLiiDd 172 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT--AADL--LLQLSTAQRQGRYKTTLQRG------VMAPRLLIIDE 172 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe--HHHH--HHHHHHHHHCCcHHHHHHHH------hcCCCEEEEcc
Confidence 56999999999999999999888654454443332 1110 0011000 10111000 01457999999
Q ss_pred CCCCC--HHHHHHHHHHHHHhcCCceEEEEecCC
Q 021660 150 ADAMT--KDAQFALRRVIEKYTKNTRFALICNQV 181 (309)
Q Consensus 150 ~~~l~--~~~~~~l~~~l~~~~~~~~~i~~~~~~ 181 (309)
++... ....+.|+.+++.......+|+++|..
T Consensus 173 lg~~~~~~~~~~~lf~li~~r~~~~s~iiTsn~~ 206 (259)
T PRK09183 173 IGYLPFSQEEANLFFQVIAKRYEKGSMILTSNLP 206 (259)
T ss_pred cccCCCChHHHHHHHHHHHHHHhcCcEEEecCCC
Confidence 98753 455667899988655455678888654
No 258
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.95 E-value=2e-09 Score=84.41 Aligned_cols=97 Identities=23% Similarity=0.337 Sum_probs=59.0
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecC-----CCcchHHHHHHHHHhhhccccccCCCCccEEEEEe
Q 021660 74 LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS-----DDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLD 148 (309)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD 148 (309)
..+++|+||+|+|||+++.++++++...+..+.|+....- .........+.+..+. ...+||||
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~-----------~~dlLilD 115 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK-----------RVDLLILD 115 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH-----------TSSCEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc-----------cccEeccc
Confidence 3569999999999999999999998776665555533210 0000011112222222 45799999
Q ss_pred CCCCCC--HHHHHHHHHHHHHhcCCceEEEEecCC
Q 021660 149 EADAMT--KDAQFALRRVIEKYTKNTRFALICNQV 181 (309)
Q Consensus 149 e~~~l~--~~~~~~l~~~l~~~~~~~~~i~~~~~~ 181 (309)
|+.... ....+.|+++++....+...|++||..
T Consensus 116 DlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~~ 150 (178)
T PF01695_consen 116 DLGYEPLSEWEAELLFEIIDERYERKPTIITSNLS 150 (178)
T ss_dssp TCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS-
T ss_pred ccceeeecccccccchhhhhHhhcccCeEeeCCCc
Confidence 987654 445677888888654455778888754
No 259
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=4.4e-08 Score=84.11 Aligned_cols=87 Identities=30% Similarity=0.389 Sum_probs=64.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcc----hHHHHHHHHHhhhccccccCCCCccEEEEEeCC
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG----IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEA 150 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~ 150 (309)
.++++.||+|+|||.|++.+|+.+ ++.+...+|+.... .+.+...+..+........ .+++..|++|||+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~l-----dVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nV-ekAQqGIVflDEv 300 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVL-----DVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNV-EKAQQGIVFLDEV 300 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHh-----CCCeEEecccchhhcccccccHHHHHHHHHHHccCCH-HHHhcCeEEEehh
Confidence 359999999999999999999998 88888888876432 2344555555544333211 1236889999999
Q ss_pred CCCC--------------HHHHHHHHHHHHH
Q 021660 151 DAMT--------------KDAQFALRRVIEK 167 (309)
Q Consensus 151 ~~l~--------------~~~~~~l~~~l~~ 167 (309)
|++. ...+..|+++++.
T Consensus 301 DKi~~~~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 301 DKITKKAESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred hhhcccCccccccccccchhHHHHHHHHhcc
Confidence 9986 2357899999994
No 260
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.94 E-value=4.9e-07 Score=73.70 Aligned_cols=140 Identities=19% Similarity=0.264 Sum_probs=90.7
Q ss_pred HHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhccccccCCC
Q 021660 60 DIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVK 139 (309)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (309)
.....+..++... ..-.++||+|+|||.+++.+++.+ +..++.+++........+.+.+......
T Consensus 20 r~~~~l~~al~~~--~~~~~~GpagtGKtetik~La~~l-----G~~~~vfnc~~~~~~~~l~ril~G~~~~-------- 84 (231)
T PF12774_consen 20 RCFLTLTQALSLN--LGGALSGPAGTGKTETIKDLARAL-----GRFVVVFNCSEQMDYQSLSRILKGLAQS-------- 84 (231)
T ss_dssp HHHHHHHHHHCTT--TEEEEESSTTSSHHHHHHHHHHCT-----T--EEEEETTSSS-HHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHhccC--CCCCCcCCCCCCchhHHHHHHHHh-----CCeEEEecccccccHHHHHHHHHHHhhc--------
Confidence 4444555666544 236789999999999999999998 8889999999988888887777776653
Q ss_pred CccEEEEEeCCCCCCHHHHHHHHHHHHHh--------------------cCCceEEEEecC----CcccchhhhcceeEE
Q 021660 140 ASVKLVLLDEADAMTKDAQFALRRVIEKY--------------------TKNTRFALICNQ----VNKIIPALQSRCTRF 195 (309)
Q Consensus 140 ~~~~lliiDe~~~l~~~~~~~l~~~l~~~--------------------~~~~~~i~~~~~----~~~l~~~l~~r~~~i 195 (309)
+..+++||++++..+....+...+... .+++.+.++.|. ...+++.++.-|+.+
T Consensus 85 --GaW~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFRpv 162 (231)
T PF12774_consen 85 --GAWLCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALFRPV 162 (231)
T ss_dssp --T-EEEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTEEEE
T ss_pred --CchhhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHhhee
Confidence 568999999999987765544444421 123344445553 347888898889999
Q ss_pred EecCCChHHHHHHHHHHHHHcCCC
Q 021660 196 RFAPLEPVHVTERLKHVIEAEGLD 219 (309)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~~~~ 219 (309)
.+..|+...+.++ ++...|..
T Consensus 163 am~~PD~~~I~ei---~L~s~GF~ 183 (231)
T PF12774_consen 163 AMMVPDLSLIAEI---LLLSQGFK 183 (231)
T ss_dssp E--S--HHHHHHH---HHHCCCTS
T ss_pred EEeCCCHHHHHHH---HHHHcCch
Confidence 9999987666444 44445643
No 261
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.93 E-value=7.2e-08 Score=96.73 Aligned_cols=189 Identities=12% Similarity=0.118 Sum_probs=107.6
Q ss_pred CCccccccChHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEE---ecCC---------C
Q 021660 50 QSLADVAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL---NASD---------D 115 (309)
Q Consensus 50 ~~~~~~ig~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~---~~~~---------~ 115 (309)
..+++++|.+..++.+..++... ....+.|+|++|+||||+|+++++.+........++.. .... .
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccc
Confidence 35788999999999999887533 22339999999999999999999887543322222210 0000 0
Q ss_pred cc--hHHHHHHHHHhhhcccccc--------CCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcccc
Q 021660 116 RG--IDVVRQQIQDFASTQSFSF--------GVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKII 185 (309)
Q Consensus 116 ~~--~~~~~~~~~~~~~~~~~~~--------~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~ 185 (309)
.. .......+........... .-...+.+|++||++. ....+.|....+...+...+|+||++...+.
T Consensus 261 ~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~--~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~ 338 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDD--QDVLDALAGQTQWFGSGSRIIVITKDKHFLR 338 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCC--HHHHHHHHhhCccCCCCcEEEEEeCcHHHHH
Confidence 00 0001111111111100000 0012567899999864 2344444443333334667888877543321
Q ss_pred hhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhcCCHHHHHHH
Q 021660 186 PALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT--EGGLAALVRLCNGDMRKALNI 242 (309)
Q Consensus 186 ~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~l~~i~~~~~g~~r~~~~~ 242 (309)
.. .-..++.+..++.++..+++.+.+-+....-+ .+....++++++|.|-.+.-+
T Consensus 339 ~~--~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vl 395 (1153)
T PLN03210 339 AH--GIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVL 395 (1153)
T ss_pred hc--CCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 11 11267888899999988888887754332211 244567888999987554433
No 262
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.92 E-value=1.4e-07 Score=85.06 Aligned_cols=149 Identities=21% Similarity=0.171 Sum_probs=91.7
Q ss_pred CCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecC----------------
Q 021660 50 QSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS---------------- 113 (309)
Q Consensus 50 ~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~---------------- 113 (309)
..+.++.|+..+++.+.-.+..+ .+++|.||+|+|||++++.+...+...... ...+...-
T Consensus 188 ~d~~~v~Gq~~~~~al~laa~~G--~~llliG~~GsGKTtLak~L~gllpp~~g~-e~le~~~i~s~~g~~~~~~~~~~r 264 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITAAGG--HNLLLIGPPGTGKTMLASRINGLLPDLSNE-EALESAAILSLVNAESVQKQWRQR 264 (506)
T ss_pred cCeEEEECcHHHHhhhheeccCC--cEEEEECCCCCcHHHHHHHHhccCCCCCCc-EEEecchhhhhhccccccCCcCCC
Confidence 37888999998888876555544 569999999999999999998876322111 11111100
Q ss_pred CC---cchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHh-------------cCCceEEEE
Q 021660 114 DD---RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-------------TKNTRFALI 177 (309)
Q Consensus 114 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~-------------~~~~~~i~~ 177 (309)
.- .........+..-.. .....-..+++.+|++||++.+....++.|.+.|++. +.+..+|.+
T Consensus 265 Pfr~ph~~~s~~~l~GGg~~-~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa 343 (506)
T PRK09862 265 PFRSPHHSASLTAMVGGGAI-PGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAA 343 (506)
T ss_pred CccCCCccchHHHHhCCCce-ehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEe
Confidence 00 000011111111000 0000112346789999999999999999999999752 345667777
Q ss_pred ecCCc---------------------ccchhhhcce-eEEEecCCCh
Q 021660 178 CNQVN---------------------KIIPALQSRC-TRFRFAPLEP 202 (309)
Q Consensus 178 ~~~~~---------------------~l~~~l~~r~-~~i~~~~~~~ 202 (309)
+|... ++...+.+|| ..+.+++++.
T Consensus 344 ~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~ 390 (506)
T PRK09862 344 MNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPP 390 (506)
T ss_pred ecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCH
Confidence 76542 3556788898 6678877753
No 263
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.92 E-value=1.6e-08 Score=86.67 Aligned_cols=137 Identities=19% Similarity=0.262 Sum_probs=76.7
Q ss_pred HHHHHHHHHhc--CCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhccccccCC
Q 021660 61 IVDTIDRLTSE--NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGV 138 (309)
Q Consensus 61 ~~~~l~~~~~~--~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (309)
++.....++.+ ....+++|+||+|+|||+|+.++++++...+..+.++. ... -...+..............+..
T Consensus 168 ~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t--~~~--l~~~l~~~~~~~~~~~~~~~~~ 243 (329)
T PRK06835 168 ILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT--ADE--LIEILREIRFNNDKELEEVYDL 243 (329)
T ss_pred HHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE--HHH--HHHHHHHHHhccchhHHHHHHH
Confidence 34444455552 12256999999999999999999999976665444432 221 1111111000000000000000
Q ss_pred CCccEEEEEeCCCCC--CHHHHHHHHHHHHHhc-CCceEEEEecCCcc-----cchhhhcc----eeEEEecCCC
Q 021660 139 KASVKLVLLDEADAM--TKDAQFALRRVIEKYT-KNTRFALICNQVNK-----IIPALQSR----CTRFRFAPLE 201 (309)
Q Consensus 139 ~~~~~lliiDe~~~l--~~~~~~~l~~~l~~~~-~~~~~i~~~~~~~~-----l~~~l~~r----~~~i~~~~~~ 201 (309)
.....+|||||+... .+.....|+.+++... ....+|++||.... +.+.+.+| +.++.|...+
T Consensus 244 l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~eri~SRL~~~~~~i~~~G~d 318 (329)
T PRK06835 244 LINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYSERISSRLLGNFTLLKFYGED 318 (329)
T ss_pred hccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHHHcCCEEEEecCcC
Confidence 114679999999554 4556788999999654 34567888875432 23445555 3556665444
No 264
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.91 E-value=8e-08 Score=88.41 Aligned_cols=202 Identities=14% Similarity=0.117 Sum_probs=124.6
Q ss_pred ChHHHHHHHHHHhcC-CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecC--C--CcchHHHHHHHHHhhhcc
Q 021660 58 HRDIVDTIDRLTSEN-RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS--D--DRGIDVVRQQIQDFASTQ 132 (309)
Q Consensus 58 ~~~~~~~l~~~~~~~-~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~ 132 (309)
++..+..+.-..-.. ....++|.|++|+|||++++.++..+.. ...|+.+..+ . ..+.-.+...+..-....
T Consensus 8 ~~~~~~Al~l~av~p~~~gGv~i~g~~G~~ks~~~r~l~~llp~---~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~ 84 (584)
T PRK13406 8 WADAALAAALLAVDPAGLGGVVLRARAGPVRDRWLAALRALLPA---GTPLRRLPPGIADDRLLGGLDLAATLRAGRPVA 84 (584)
T ss_pred HHHHHHHHHHhCcCccccceEEEEcCCCcHHHHHHHHHHHhcCC---CCCcccCCCCCcHHHccCCchHHhHhhcCCcCC
Confidence 344444443333333 5566999999999999999999998732 1233322221 1 122223333333222111
Q ss_pred ccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHh-------------cCCceEEEEec---CCcccchhhhcce-eEE
Q 021660 133 SFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-------------TKNTRFALICN---QVNKIIPALQSRC-TRF 195 (309)
Q Consensus 133 ~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~-------------~~~~~~i~~~~---~~~~l~~~l~~r~-~~i 195 (309)
....-..++++||+|||++.+.+..++.|++.++.- +....+|.+-+ ....+.+.+..|| ..+
T Consensus 85 ~pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v 164 (584)
T PRK13406 85 QRGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHL 164 (584)
T ss_pred CCCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEE
Confidence 112223457889999999999999999999999962 22233333211 1235788899999 778
Q ss_pred EecCCChHHHH-------HHHHHHHHHcCCCCCHHHHHHHHHHhc--C--CHHHHHHHHHHHHhhc-----CCcCHHHHH
Q 021660 196 RFAPLEPVHVT-------ERLKHVIEAEGLDVTEGGLAALVRLCN--G--DMRKALNILQSTHMAS-----QQITEEAVY 259 (309)
Q Consensus 196 ~~~~~~~~~~~-------~~l~~~~~~~~~~~~~~~l~~i~~~~~--g--~~r~~~~~l~~~~~~~-----~~i~~~~v~ 259 (309)
.+..++..+.. .+...+..-.++.++++.++++++.+. | .+|..+.+++.+...+ ..++.++|.
T Consensus 165 ~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~ 244 (584)
T PRK13406 165 DLDGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLA 244 (584)
T ss_pred EcCCCChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 88877765432 233333222478899999988887552 2 5677777775554433 579999998
Q ss_pred hhh
Q 021660 260 LCT 262 (309)
Q Consensus 260 ~~~ 262 (309)
.++
T Consensus 245 ~Aa 247 (584)
T PRK13406 245 LAA 247 (584)
T ss_pred HHH
Confidence 776
No 265
>PRK06921 hypothetical protein; Provisional
Probab=98.90 E-value=1.5e-08 Score=84.57 Aligned_cols=100 Identities=15% Similarity=0.213 Sum_probs=60.1
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHHccC-cccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCC
Q 021660 74 LPHLLLYGPPGTGKTSTILAVARKLYGA-QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADA 152 (309)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~ 152 (309)
..+++|+|++|+|||+|+.++++++... +..+.++. ... ....+...+...... +.......+|||||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~--~~~--l~~~l~~~~~~~~~~----~~~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP--FVE--GFGDLKDDFDLLEAK----LNRMKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE--HHH--HHHHHHHHHHHHHHH----HHHhcCCCEEEEecccc
Confidence 4569999999999999999999998654 44443333 211 111221111111100 00111467999999944
Q ss_pred -------CCHHHHHHHHHHHHHhc-CCceEEEEecCC
Q 021660 153 -------MTKDAQFALRRVIEKYT-KNTRFALICNQV 181 (309)
Q Consensus 153 -------l~~~~~~~l~~~l~~~~-~~~~~i~~~~~~ 181 (309)
...-....|+.+++... ....+|+++|..
T Consensus 189 ~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~~ 225 (266)
T PRK06921 189 PVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSELT 225 (266)
T ss_pred ccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 33445667888888654 345677888754
No 266
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=7.1e-08 Score=80.35 Aligned_cols=123 Identities=24% Similarity=0.349 Sum_probs=81.4
Q ss_pred ccEEEEEeCCCCCCHH------------HHHHHHHHHHHhc--------CCceEEEEe------cCCcccchhhhcce-e
Q 021660 141 SVKLVLLDEADAMTKD------------AQFALRRVIEKYT--------KNTRFALIC------NQVNKIIPALQSRC-T 193 (309)
Q Consensus 141 ~~~lliiDe~~~l~~~------------~~~~l~~~l~~~~--------~~~~~i~~~------~~~~~l~~~l~~r~-~ 193 (309)
+.++++|||+|++... .+..|+.+++... ....++|++ ..++.+.|.|..|| .
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPI 329 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPI 329 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCce
Confidence 4569999999998532 2456888887532 112334443 46678889999999 8
Q ss_pred EEEecCCChHHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHHhc--------CCHHHHHHHHHHHHh----
Q 021660 194 RFRFAPLEPVHVTERLKH-----------VIEAEGL--DVTEGGLAALVRLCN--------GDMRKALNILQSTHM---- 248 (309)
Q Consensus 194 ~i~~~~~~~~~~~~~l~~-----------~~~~~~~--~~~~~~l~~i~~~~~--------g~~r~~~~~l~~~~~---- 248 (309)
.+++.+++.+++..+|.. .++.+|+ .++++++..|++.+- =-.|.+...++++.-
T Consensus 330 RVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlLediSF 409 (444)
T COG1220 330 RVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLLEDISF 409 (444)
T ss_pred EEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhCc
Confidence 899999999999887542 2334454 578999999999762 125666666655442
Q ss_pred hc-----C--CcCHHHHHhhhC
Q 021660 249 AS-----Q--QITEEAVYLCTG 263 (309)
Q Consensus 249 ~~-----~--~i~~~~v~~~~~ 263 (309)
.+ . .|+.+-|.+.++
T Consensus 410 eA~d~~g~~v~Id~~yV~~~l~ 431 (444)
T COG1220 410 EAPDMSGQKVTIDAEYVEEKLG 431 (444)
T ss_pred cCCcCCCCeEEEcHHHHHHHHH
Confidence 22 1 366666665553
No 267
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.89 E-value=2.2e-08 Score=89.58 Aligned_cols=233 Identities=17% Similarity=0.145 Sum_probs=129.1
Q ss_pred CccccccChHHHHHHHHHHhcCC------------CCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcch
Q 021660 51 SLADVAAHRDIVDTIDRLTSENR------------LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 118 (309)
Q Consensus 51 ~~~~~ig~~~~~~~l~~~~~~~~------------~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 118 (309)
-++.+.|++.++..+.-.+.++- -.|++|.|-||+|||.++++++.-+. ...|..-+.+...+.
T Consensus 343 l~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsP----R~vYtsGkaSSaAGL 418 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSP----RSVYTSGKASSAAGL 418 (764)
T ss_pred hCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCC----cceEecCcccccccc
Confidence 46678899999887776665431 12499999999999999999988762 222222222111110
Q ss_pred --HHHHH--HHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHh-------------cCCceEEEEecCC
Q 021660 119 --DVVRQ--QIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-------------TKNTRFALICNQV 181 (309)
Q Consensus 119 --~~~~~--~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~-------------~~~~~~i~~~~~~ 181 (309)
...+. .-....+.....+ +..+|..|||+|++....+.+|+++|+.. +.++.+|.++|+.
T Consensus 419 TaaVvkD~esgdf~iEAGALmL---ADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv 495 (764)
T KOG0480|consen 419 TAAVVKDEESGDFTIEAGALML---ADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPV 495 (764)
T ss_pred eEEEEecCCCCceeeecCcEEE---ccCceEEechhcccChHhHHHHHHHHHhheehheecceEEeecchhhhhhhcCCc
Confidence 00000 0000111111112 25789999999999998899999999963 2344566666543
Q ss_pred c-------------ccchhhhccee--EEEecCCChHHHHHHHHHHHHH----------------------------cCC
Q 021660 182 N-------------KIIPALQSRCT--RFRFAPLEPVHVTERLKHVIEA----------------------------EGL 218 (309)
Q Consensus 182 ~-------------~l~~~l~~r~~--~i~~~~~~~~~~~~~l~~~~~~----------------------------~~~ 218 (309)
. ++.+.+.+||. .+-+..++...-..+-++++.. ..-
T Consensus 496 ~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~yAR~~~P 575 (764)
T KOG0480|consen 496 GGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIRYARNFKP 575 (764)
T ss_pred CCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHHHHHHHhcCc
Confidence 2 34567788873 3444445444333333333332 222
Q ss_pred CCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcCHHHHHhhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 021660 219 DVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMK 293 (309)
Q Consensus 219 ~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 293 (309)
.++.++.+.|.+.+.+ +|.- ..+.....+-.||...++.++...+.....++-+.+...+..++++.+.+-+
T Consensus 576 ~ls~ea~~~lve~Y~~-lR~~--~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eLlk~Si 647 (764)
T KOG0480|consen 576 KLSKEASEMLVEKYKG-LRQR--DAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVELLKKSI 647 (764)
T ss_pred cccHHHHHHHHHHHHH-HHHh--hccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHhhh
Confidence 3444555555544432 0000 0000000112577777777776666666666666666666666666666554
No 268
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.86 E-value=8.8e-09 Score=81.67 Aligned_cols=48 Identities=25% Similarity=0.392 Sum_probs=34.0
Q ss_pred ccccChHHHHHHHHHHh---cCCCCeEEEECCCCCcHHHHHHHHHHHHccC
Q 021660 54 DVAAHRDIVDTIDRLTS---ENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101 (309)
Q Consensus 54 ~~ig~~~~~~~l~~~~~---~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~ 101 (309)
.|+|+++.++.+...+. .+..+.++|+|++|+|||++++.+...+...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 37899999999999993 2334459999999999999999999988554
No 269
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.8e-07 Score=85.73 Aligned_cols=166 Identities=20% Similarity=0.274 Sum_probs=104.5
Q ss_pred ccChHHHHHHHHHHhcCC---------CCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCc--chHHHHHH
Q 021660 56 AAHRDIVDTIDRLTSENR---------LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR--GIDVVRQQ 124 (309)
Q Consensus 56 ig~~~~~~~l~~~~~~~~---------~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 124 (309)
.+.+..+..+...+.-.. .+.+|++|+||+|||++++.+|+++ +.++.+++|.... ........
T Consensus 404 ~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~l-----g~h~~evdc~el~~~s~~~~etk 478 (953)
T KOG0736|consen 404 PGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASEL-----GLHLLEVDCYELVAESASHTETK 478 (953)
T ss_pred ccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHh-----CCceEeccHHHHhhcccchhHHH
Confidence 345555555555554321 2339999999999999999999998 8888888875321 11111111
Q ss_pred HHHh-hhccccccCCCCccEEEEEeCCCCCCHHH--------HHHHHHHHH-H----hcCCceEEEEecCCcccchhhhc
Q 021660 125 IQDF-ASTQSFSFGVKASVKLVLLDEADAMTKDA--------QFALRRVIE-K----YTKNTRFALICNQVNKIIPALQS 190 (309)
Q Consensus 125 ~~~~-~~~~~~~~~~~~~~~lliiDe~~~l~~~~--------~~~l~~~l~-~----~~~~~~~i~~~~~~~~l~~~l~~ 190 (309)
+... ...... .+.+|++.++|.+.-+. ...+...+. + ..+.+.+|.+++..+.+++.+.+
T Consensus 479 l~~~f~~a~~~------~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~ 552 (953)
T KOG0736|consen 479 LQAIFSRARRC------SPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQS 552 (953)
T ss_pred HHHHHHHHhhc------CceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHH
Confidence 1111 111111 57789999888775221 222333333 1 12345667777888999999988
Q ss_pred ce-eEEEecCCChHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcC
Q 021660 191 RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTE-GGLAALVRLCNG 234 (309)
Q Consensus 191 r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~l~~i~~~~~g 234 (309)
-+ ..+.++.++.++..+|++-++.... +++ ..+..+++++.|
T Consensus 553 ~f~~ei~~~~lse~qRl~iLq~y~~~~~--~n~~v~~k~~a~~t~g 596 (953)
T KOG0736|consen 553 LFLHEIEVPALSEEQRLEILQWYLNHLP--LNQDVNLKQLARKTSG 596 (953)
T ss_pred hhhhhccCCCCCHHHHHHHHHHHHhccc--cchHHHHHHHHHhcCC
Confidence 87 8899999999999999998876553 332 334455555554
No 270
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.84 E-value=6.1e-09 Score=77.71 Aligned_cols=104 Identities=27% Similarity=0.369 Sum_probs=60.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccCcc---cccEEEEecCCCcchHHHHHHHHHhhhccccc-cC------------C
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGAQY---HNMILELNASDDRGIDVVRQQIQDFASTQSFS-FG------------V 138 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------------~ 138 (309)
..++++||+|+|||+++..+++.+..... ...++.+++........+...+.......... .. .
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 34999999999999999999999743210 34444555443333333333333332222211 00 0
Q ss_pred CCccEEEEEeCCCCC-CHHHHHHHHHHHHHhcCCceEEEEecC
Q 021660 139 KASVKLVLLDEADAM-TKDAQFALRRVIEKYTKNTRFALICNQ 180 (309)
Q Consensus 139 ~~~~~lliiDe~~~l-~~~~~~~l~~~l~~~~~~~~~i~~~~~ 180 (309)
.....+|+|||+|.+ ..+..+.|..+.+ .....+|+++++
T Consensus 85 ~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred hcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 112359999999999 7666666666665 446677777754
No 271
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.83 E-value=1.7e-08 Score=83.73 Aligned_cols=118 Identities=18% Similarity=0.295 Sum_probs=66.0
Q ss_pred ChHHHHHHHHHHh-cCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhccccc-
Q 021660 58 HRDIVDTIDRLTS-ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFS- 135 (309)
Q Consensus 58 ~~~~~~~l~~~~~-~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 135 (309)
+...+..+..... -.+..+++|+||||+|||+|+.++++++...+..+.++.+ ++ ....+......- .....
T Consensus 88 ~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~--~e--l~~~Lk~~~~~~--~~~~~l 161 (254)
T COG1484 88 DKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITA--PD--LLSKLKAAFDEG--RLEEKL 161 (254)
T ss_pred hHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEH--HH--HHHHHHHHHhcC--chHHHH
Confidence 3344444443331 1244569999999999999999999999744454444432 21 111121111110 00000
Q ss_pred cCCCCccEEEEEeCCCCCC--HHHHHHHHHHHHHhcCCceEEEEecCC
Q 021660 136 FGVKASVKLVLLDEADAMT--KDAQFALRRVIEKYTKNTRFALICNQV 181 (309)
Q Consensus 136 ~~~~~~~~lliiDe~~~l~--~~~~~~l~~~l~~~~~~~~~i~~~~~~ 181 (309)
........||||||+.... ....+.++.+|...-.....++++|..
T Consensus 162 ~~~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~~~tsN~~ 209 (254)
T COG1484 162 LRELKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESRSLIITSNLS 209 (254)
T ss_pred HHHhhcCCEEEEecccCccCCHHHHHHHHHHHHHHHhhccceeecCCC
Confidence 0001256899999987754 445677777777554343447788754
No 272
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.5e-07 Score=87.57 Aligned_cols=116 Identities=23% Similarity=0.365 Sum_probs=79.8
Q ss_pred cccccChHHHHHHHHHHhcCC-------CC-eEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCC----------
Q 021660 53 ADVAAHRDIVDTIDRLTSENR-------LP-HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD---------- 114 (309)
Q Consensus 53 ~~~ig~~~~~~~l~~~~~~~~-------~~-~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~---------- 114 (309)
+.++||++++..+...+...+ +. .++|.||.|+|||.+|++++..+++... .++.++...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~--~~IriDmse~~evskligs 639 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEE--NFIRLDMSEFQEVSKLIGS 639 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCcc--ceEEechhhhhhhhhccCC
Confidence 468999999999988876432 22 2999999999999999999999955433 334444332
Q ss_pred ---CcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCceEEEEec
Q 021660 115 ---DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICN 179 (309)
Q Consensus 115 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~~i~~~~ 179 (309)
..+... -..+...... ....||+|||+++..+..++.|+.++++-. .+++||+|+|
T Consensus 640 p~gyvG~e~-gg~Lteavrr--------rP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn 709 (898)
T KOG1051|consen 640 PPGYVGKEE-GGQLTEAVKR--------RPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSN 709 (898)
T ss_pred Ccccccchh-HHHHHHHHhc--------CCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEecc
Confidence 011111 1122222211 257899999999999999999999999621 4667888864
No 273
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.82 E-value=4.8e-07 Score=81.65 Aligned_cols=170 Identities=19% Similarity=0.229 Sum_probs=112.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhcccc--------ccCCCCccEEEEEe
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSF--------SFGVKASVKLVLLD 148 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~lliiD 148 (309)
+++.|++|+||-.+++.+..... ..-.++.++|.... ...+.+.+..+...... ..-..+..+.+++|
T Consensus 339 vll~GEtGtGKe~laraiH~~s~---~~gpfvAvNCaAip-~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFld 414 (606)
T COG3284 339 VLLQGETGTGKEVLARAIHQNSE---AAGPFVAVNCAAIP-EALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLD 414 (606)
T ss_pred eEecCCcchhHHHHHHHHHhccc---ccCCeEEEEeccch-HHhhhHHHhccCccccccchhccccccceecCCCccHHH
Confidence 99999999999999999987753 45667888887632 22233333222211111 01122467789999
Q ss_pred CCCCCCHHHHHHHHHHHHHhc----------CCceEEEEecCC-------cccchhhhcce--eEEEecCCCh-HHHHHH
Q 021660 149 EADAMTKDAQFALRRVIEKYT----------KNTRFALICNQV-------NKIIPALQSRC--TRFRFAPLEP-VHVTER 208 (309)
Q Consensus 149 e~~~l~~~~~~~l~~~l~~~~----------~~~~~i~~~~~~-------~~l~~~l~~r~--~~i~~~~~~~-~~~~~~ 208 (309)
|+..|+-+.+..|+.++++-. -+..+|.+|+.. ...-+.|.-|. .+|.++|+.. .+....
T Consensus 415 eIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~ 494 (606)
T COG3284 415 EIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGRFREDLYYRLNAFVITLPPLRERSDRIPL 494 (606)
T ss_pred HhhhchHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHHHcCCchHHHHHHhcCeeeccCchhcccccHHH
Confidence 999999999999999999631 234455555432 12334455555 4566666653 234444
Q ss_pred HHHHHHHc---CCCCCHHHHHHHHHH-hcCCHHHHHHHHHHHHhhc
Q 021660 209 LKHVIEAE---GLDVTEGGLAALVRL-CNGDMRKALNILQSTHMAS 250 (309)
Q Consensus 209 l~~~~~~~---~~~~~~~~l~~i~~~-~~g~~r~~~~~l~~~~~~~ 250 (309)
|.+++.++ ...+++++++.+..+ ++||+|.+.+.++.++..+
T Consensus 495 l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~ 540 (606)
T COG3284 495 LDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALS 540 (606)
T ss_pred HHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcC
Confidence 55555554 467899999888775 6999999999999998766
No 274
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.81 E-value=1.8e-08 Score=85.73 Aligned_cols=127 Identities=18% Similarity=0.188 Sum_probs=71.1
Q ss_pred CCCcccccc----ChHHHHHHHHHHhcC----CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHH
Q 021660 49 PQSLADVAA----HRDIVDTIDRLTSEN----RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDV 120 (309)
Q Consensus 49 p~~~~~~ig----~~~~~~~l~~~~~~~----~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (309)
..+|+++.. +..+...+..++... ...+++|+||+|+|||+|+.++++++...+..+.++.+.. ....
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~----l~~~ 198 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPE----FIRE 198 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHH----HHHH
Confidence 445666653 334445555565532 2345999999999999999999999976665555543321 1111
Q ss_pred HHHHHHHhhhccccccCCCCccEEEEEeCCCCCC--HHHHHHH-HHHHHHh-cCCceEEEEecCC
Q 021660 121 VRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT--KDAQFAL-RRVIEKY-TKNTRFALICNQV 181 (309)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~--~~~~~~l-~~~l~~~-~~~~~~i~~~~~~ 181 (309)
+...+..-. ....+.......+|||||+..-. +-....+ ..+++.. ....+.|++||..
T Consensus 199 lk~~~~~~~--~~~~l~~l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 199 LKNSISDGS--VKEKIDAVKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFD 261 (306)
T ss_pred HHHHHhcCc--HHHHHHHhcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 111110000 00000001156799999986543 3334344 4455643 4567788888754
No 275
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.80 E-value=1.2e-07 Score=84.77 Aligned_cols=227 Identities=14% Similarity=0.167 Sum_probs=127.2
Q ss_pred cccccChHHHHHHHHHHhcCCC------------CeEEEECCCCCcHHHHHHHHHHHHcc----CcccccEEEEec--CC
Q 021660 53 ADVAAHRDIVDTIDRLTSENRL------------PHLLLYGPPGTGKTSTILAVARKLYG----AQYHNMILELNA--SD 114 (309)
Q Consensus 53 ~~~ig~~~~~~~l~~~~~~~~~------------~~~ll~G~~G~GKT~l~~~l~~~~~~----~~~~~~~~~~~~--~~ 114 (309)
..+.|+..++.++.-.+.++.. -++||+|-||||||.+++.+++.... .|.+...+-+.+ ..
T Consensus 449 PsIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~K 528 (854)
T KOG0477|consen 449 PSIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRK 528 (854)
T ss_pred chhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEee
Confidence 3577889988888877765421 13999999999999999999887521 111111111111 11
Q ss_pred CcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHh-------------cCCceEEEEecCC
Q 021660 115 DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-------------TKNTRFALICNQV 181 (309)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~-------------~~~~~~i~~~~~~ 181 (309)
..-..+| .++.....++ .++|++|||+|++.......+.+.|+.. ...+.+|+++|..
T Consensus 529 dPvtrEW------TLEaGALVLA---DkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctvIAAanPi 599 (854)
T KOG0477|consen 529 DPVTREW------TLEAGALVLA---DKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPI 599 (854)
T ss_pred CCcccee------eeccCeEEEc---cCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhhheecCCC
Confidence 1001111 1111122222 5789999999999988888888888853 2456788888752
Q ss_pred c-------------ccchhhhcceeEEEe-----cCCChHHHHHHH-HHHHHHc-------CC----------CCCHHHH
Q 021660 182 N-------------KIIPALQSRCTRFRF-----APLEPVHVTERL-KHVIEAE-------GL----------DVTEGGL 225 (309)
Q Consensus 182 ~-------------~l~~~l~~r~~~i~~-----~~~~~~~~~~~l-~~~~~~~-------~~----------~~~~~~l 225 (309)
. .+.+.+++||.++.+ .|...+.+.+++ ..+.+-+ +. .++++++
T Consensus 600 gGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~~ipq~lL 679 (854)
T KOG0477|consen 600 GGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVEPIPQELL 679 (854)
T ss_pred CCccCCccchhhccccccchhhhcceeeeeecccCchhHHHHHHHHHHhHhhcCCcccccCcccccccccccccChHHHH
Confidence 1 345678888855443 333333444433 2222211 11 1445555
Q ss_pred HHHHHHh---------cCCHHHHHHHHHHHHhhc-----CCcCHHHHHhhhCCCChHHHHHHHHHHhcCCHHHHHHH
Q 021660 226 AALVRLC---------NGDMRKALNILQSTHMAS-----QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKR 288 (309)
Q Consensus 226 ~~i~~~~---------~g~~r~~~~~l~~~~~~~-----~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (309)
..-.-++ .+|..++-+....+-..+ -.||..+++.++.-.+......+-+.+...|...|+.+
T Consensus 680 rkyI~yar~~v~PkL~q~d~~K~s~vya~lRkES~~tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~AI~v 756 (854)
T KOG0477|consen 680 RKYIIYAREKVRPKLNQMDMDKISSVYADLRKESMATGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVDMAIRV 756 (854)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHHHhhccccCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHHHHH
Confidence 4444433 233333333332222211 25788888877766666666666666666666665554
No 276
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.74 E-value=1.2e-07 Score=79.53 Aligned_cols=148 Identities=19% Similarity=0.284 Sum_probs=84.7
Q ss_pred HHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhccc-cccCCC-Cc
Q 021660 64 TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQS-FSFGVK-AS 141 (309)
Q Consensus 64 ~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~ 141 (309)
.+..++..+ .+++|+||+|+|||.+++.+.+.+.... .....++.+.......+...++....... ..+++. .+
T Consensus 25 ll~~l~~~~--~pvLl~G~~GtGKT~li~~~l~~l~~~~--~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k 100 (272)
T PF12775_consen 25 LLDLLLSNG--RPVLLVGPSGTGKTSLIQNFLSSLDSDK--YLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGK 100 (272)
T ss_dssp HHHHHHHCT--EEEEEESSTTSSHHHHHHHHHHCSTTCC--EEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSS
T ss_pred HHHHHHHcC--CcEEEECCCCCchhHHHHhhhccCCccc--cceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCc
Confidence 444555554 3499999999999999999887763322 22334555544444333333322221111 112222 24
Q ss_pred cEEEEEeCCCCCCHH------HHHHHHHHHHHhc------------CCceEEEEecCCc---ccchhhhcceeEEEecCC
Q 021660 142 VKLVLLDEADAMTKD------AQFALRRVIEKYT------------KNTRFALICNQVN---KIIPALQSRCTRFRFAPL 200 (309)
Q Consensus 142 ~~lliiDe~~~l~~~------~~~~l~~~l~~~~------------~~~~~i~~~~~~~---~l~~~l~~r~~~i~~~~~ 200 (309)
+.+++|||++.-.++ ..+.|..+++... .+..+|.+++... .+.+.+.+.|.++.+..|
T Consensus 101 ~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~i~~~~~p 180 (272)
T PF12775_consen 101 KLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFNILNIPYP 180 (272)
T ss_dssp EEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEEEEE----
T ss_pred EEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheEEEEecCC
Confidence 568999999765433 2466667776311 2445566555432 467788888999999999
Q ss_pred ChHHHHHHHHHHHHH
Q 021660 201 EPVHVTERLKHVIEA 215 (309)
Q Consensus 201 ~~~~~~~~l~~~~~~ 215 (309)
+.+.+..+...++..
T Consensus 181 ~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 181 SDESLNTIFSSILQS 195 (272)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhh
Confidence 999999988887764
No 277
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.71 E-value=5.2e-07 Score=67.39 Aligned_cols=27 Identities=37% Similarity=0.673 Sum_probs=24.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccCc
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGAQ 102 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~ 102 (309)
.++++|+||+||||++..++..+...+
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g 33 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKG 33 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcC
Confidence 499999999999999999999986553
No 278
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=9.8e-07 Score=77.83 Aligned_cols=153 Identities=14% Similarity=0.269 Sum_probs=92.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCC-Ccch------HHHHHHHHHhhhccccccCCCCccEEEEEe
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD-DRGI------DVVRQQIQDFASTQSFSFGVKASVKLVLLD 148 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~lliiD 148 (309)
.+||.||||+|||+||..+|... ...|+.+-+.. ..+. ..+...+.+..++ .-.+|++|
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S-----~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS---------~lsiivvD 605 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSS-----DFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKS---------PLSIIVVD 605 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhc-----CCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcC---------cceEEEEc
Confidence 39999999999999999999886 56666654433 2222 2233344444332 56799999
Q ss_pred CCCCCC------HH----HHHHHHHHHHHhcCC--ceEEEEecCCcccchh--hhcce-eEEEecCCCh-HHHHHHHHHH
Q 021660 149 EADAMT------KD----AQFALRRVIEKYTKN--TRFALICNQVNKIIPA--LQSRC-TRFRFAPLEP-VHVTERLKHV 212 (309)
Q Consensus 149 e~~~l~------~~----~~~~l~~~l~~~~~~--~~~i~~~~~~~~l~~~--l~~r~-~~i~~~~~~~-~~~~~~l~~~ 212 (309)
++++|- +. ....|+=++...|+. -.+|++|+........ +..-| ..++++.++. +++.+++...
T Consensus 606 diErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 606 DIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEEL 685 (744)
T ss_pred chhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHc
Confidence 998873 22 345555566665554 3456666554443332 33444 6788888876 6777777653
Q ss_pred HHHcCCCCCHHHHHHHHHHhcC-----CHHHHHHHHHHHH
Q 021660 213 IEAEGLDVTEGGLAALVRLCNG-----DMRKALNILQSTH 247 (309)
Q Consensus 213 ~~~~~~~~~~~~l~~i~~~~~g-----~~r~~~~~l~~~~ 247 (309)
+ .++++....+++.-.+ -+..++.+++.+.
T Consensus 686 ----n-~fsd~~~~~~~~~~~~~~~~vgIKklL~lie~a~ 720 (744)
T KOG0741|consen 686 ----N-IFSDDEVRAIAEQLLSKKVNVGIKKLLMLIEMAR 720 (744)
T ss_pred ----c-CCCcchhHHHHHHHhccccchhHHHHHHHHHHHh
Confidence 3 3556666666655433 1445555555443
No 279
>PHA02774 E1; Provisional
Probab=98.66 E-value=7.6e-07 Score=80.35 Aligned_cols=138 Identities=22% Similarity=0.273 Sum_probs=87.3
Q ss_pred HHHHHHHHHHhcCCCC-eEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhccccccCC
Q 021660 60 DIVDTIDRLTSENRLP-HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGV 138 (309)
Q Consensus 60 ~~~~~l~~~~~~~~~~-~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (309)
..+..++.++++.... .++|+||||+|||+++..+++.+. +..+..++..... + +..
T Consensus 419 ~fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~----G~vi~fvN~~s~F----w---Lqp----------- 476 (613)
T PHA02774 419 SFLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK----GKVISFVNSKSHF----W---LQP----------- 476 (613)
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC----CCEEEEEECcccc----c---cch-----------
Confidence 5667788888765433 399999999999999999999983 1222223332111 1 111
Q ss_pred CCccEEEEEeCCCCCCHHH-HHHHHHHHHHhc-------------CCceEEEEecCCc---ccchhhhcceeEEEecC--
Q 021660 139 KASVKLVLLDEADAMTKDA-QFALRRVIEKYT-------------KNTRFALICNQVN---KIIPALQSRCTRFRFAP-- 199 (309)
Q Consensus 139 ~~~~~lliiDe~~~l~~~~-~~~l~~~l~~~~-------------~~~~~i~~~~~~~---~l~~~l~~r~~~i~~~~-- 199 (309)
-...+++++||+..-..+. ...|..+++..+ ..+++|+|||... .-.+.|.+|...+.|+.
T Consensus 477 l~d~ki~vlDD~t~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~sRi~~f~F~n~~ 556 (613)
T PHA02774 477 LADAKIALLDDATHPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHSRITVFEFPNPF 556 (613)
T ss_pred hccCCEEEEecCcchHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHhhhhEEEEECCCCC
Confidence 1146799999983322111 234556665431 2367888887432 23456888988777643
Q ss_pred -----------CChHHHHHHHHHHHHHcCCC
Q 021660 200 -----------LEPVHVTERLKHVIEAEGLD 219 (309)
Q Consensus 200 -----------~~~~~~~~~l~~~~~~~~~~ 219 (309)
++....+.++++...+.++.
T Consensus 557 P~d~~G~P~f~ltd~~WKsFF~rlw~~LdL~ 587 (613)
T PHA02774 557 PLDENGNPVFELTDANWKSFFERLWSQLDLS 587 (613)
T ss_pred CcCCCCCEeeeeCchhHHHHHHHHHHHcCCC
Confidence 34577888999988887765
No 280
>PHA00729 NTP-binding motif containing protein
Probab=98.61 E-value=5.9e-07 Score=72.19 Aligned_cols=125 Identities=18% Similarity=0.240 Sum_probs=66.6
Q ss_pred HHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccc--cEEEEecCC---CcchHHHHHHHHHhhhccccccCCCCc
Q 021660 67 RLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHN--MILELNASD---DRGIDVVRQQIQDFASTQSFSFGVKAS 141 (309)
Q Consensus 67 ~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (309)
+.+..+...+++|+|+||+|||++|..+++.+....... ....+.... -.....+...+...... ...
T Consensus 10 ~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~-------~~~ 82 (226)
T PHA00729 10 SAYNNNGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDN-------DYR 82 (226)
T ss_pred HHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhc-------CCC
Confidence 334455556799999999999999999999873110000 000000000 01122233333322211 012
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEecCCChHHHHHHHHHH
Q 021660 142 VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212 (309)
Q Consensus 142 ~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~ 212 (309)
..+|||||+.--.... . +..+ .. .....+.+.+++|+..+.|.+++++++.+.++.+
T Consensus 83 ~dlLIIDd~G~~~~~~---~--wh~~------~~---~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~R 139 (226)
T PHA00729 83 IPLIIFDDAGIWLSKY---V--WYED------YM---KTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREK 139 (226)
T ss_pred CCEEEEeCCchhhccc---c--hhhh------cc---chHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhC
Confidence 3578999864221110 0 0000 00 1122456778889989999999999888877763
No 281
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.58 E-value=7.8e-08 Score=74.54 Aligned_cols=63 Identities=16% Similarity=0.280 Sum_probs=36.5
Q ss_pred ccEEEEEeCCCCC---CHHHHHHHHHHHHHhcCCceEEEEecC--Ccccchhhhcc--eeEEEecCCChHHHH
Q 021660 141 SVKLVLLDEADAM---TKDAQFALRRVIEKYTKNTRFALICNQ--VNKIIPALQSR--CTRFRFAPLEPVHVT 206 (309)
Q Consensus 141 ~~~lliiDe~~~l---~~~~~~~l~~~l~~~~~~~~~i~~~~~--~~~l~~~l~~r--~~~i~~~~~~~~~~~ 206 (309)
...+++|||+..+ ++...+.+..+++ .+..+|.+-.. ...+.+.+.+| +.++.+.+-+.+.+.
T Consensus 95 ~~~liviDEIG~mEl~~~~F~~~v~~~l~---s~~~vi~vv~~~~~~~~l~~i~~~~~~~i~~vt~~NRd~l~ 164 (168)
T PF03266_consen 95 SSDLIVIDEIGKMELKSPGFREAVEKLLD---SNKPVIGVVHKRSDNPFLEEIKRRPDVKIFEVTEENRDALP 164 (168)
T ss_dssp CCHEEEE---STTCCC-CHHHHHHHHHHC---TTSEEEEE--SS--SCCHHHHHTTTTSEEEE--TTTCCCHH
T ss_pred CCCEEEEeccchhhhcCHHHHHHHHHHHc---CCCcEEEEEecCCCcHHHHHHHhCCCcEEEEeChhHHhhHh
Confidence 5679999998665 4566777777777 23445555433 34567788887 688888777665553
No 282
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.57 E-value=1.4e-05 Score=69.74 Aligned_cols=106 Identities=8% Similarity=0.132 Sum_probs=69.1
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHH------hcCCceEEEEecCCc---ccchhhhcc-eeEEEecCCChHHHHHHHHH
Q 021660 142 VKLVLLDEADAMTKDAQFALRRVIEK------YTKNTRFALICNQVN---KIIPALQSR-CTRFRFAPLEPVHVTERLKH 211 (309)
Q Consensus 142 ~~lliiDe~~~l~~~~~~~l~~~l~~------~~~~~~~i~~~~~~~---~l~~~l~~r-~~~i~~~~~~~~~~~~~l~~ 211 (309)
+.||+||++..-... .+.+++.|.+ ...-..||+.|++.. .+.+++-++ |..|.+...+++..+.++..
T Consensus 149 ~PVVVIdnF~~k~~~-~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEE-NDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred CCEEEEcchhccCcc-cchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 569999998664433 3444443332 123456788876543 455566665 48899999999999999999
Q ss_pred HHHHcC-C-------------------CCCHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 021660 212 VIEAEG-L-------------------DVTEGGLAALVRLCNGDMRKALNILQSTHM 248 (309)
Q Consensus 212 ~~~~~~-~-------------------~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~ 248 (309)
.+.... . ..+...++..++..||-+..+.-+.+++..
T Consensus 228 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 228 QLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred HhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 886541 1 134555667777777776666666666554
No 283
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=98.55 E-value=2.2e-05 Score=68.08 Aligned_cols=108 Identities=15% Similarity=0.211 Sum_probs=68.4
Q ss_pred ccEEEEEeCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCCc---------------ccchhhhcce--eEEEecCCC
Q 021660 141 SVKLVLLDEADAMTKDAQFALRRVIEKYT--KNTRFALICNQVN---------------KIIPALQSRC--TRFRFAPLE 201 (309)
Q Consensus 141 ~~~lliiDe~~~l~~~~~~~l~~~l~~~~--~~~~~i~~~~~~~---------------~l~~~l~~r~--~~i~~~~~~ 201 (309)
.+-||+|||+|++.++....+++.+...- +++.+|++.+... ........++ ..+.+++++
T Consensus 172 ~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKiiq~~~~lP~~~ 251 (325)
T PF07693_consen 172 KRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKIIQVPFSLPPPS 251 (325)
T ss_pred ceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhhcCeEEEeCCCC
Confidence 56789999999999988888888887543 3566666664210 1222334444 558899999
Q ss_pred hHHHHHHHHHHHHHcCCCC----C---------------HHHHHHHHHH---hcCCHHHHHHHHHHHHh
Q 021660 202 PVHVTERLKHVIEAEGLDV----T---------------EGGLAALVRL---CNGDMRKALNILQSTHM 248 (309)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~----~---------------~~~l~~i~~~---~~g~~r~~~~~l~~~~~ 248 (309)
..++..++...+....... . ...+..+... ..++||.+...+..+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~npR~ikr~iN~~~~ 320 (325)
T PF07693_consen 252 PSDLERYLNELLESLESETNESDDIETLSNSASNENLRIDEILNDIIDSIDFSIGNPRDIKRFINSLSL 320 (325)
T ss_pred HHHHHHHHHHHHHHhhhccccccchhhhhhcchhhhhhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHH
Confidence 9999988888765432211 1 1223333332 35788888777766543
No 284
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.52 E-value=3.6e-05 Score=68.31 Aligned_cols=133 Identities=16% Similarity=0.214 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcc-hHHHHHHHHHhhhccccccCC
Q 021660 60 DIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG-IDVVRQQIQDFASTQSFSFGV 138 (309)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 138 (309)
.....+.+.+..... .++++||.+|||||+++.+.+..... ++.++..+... .....+.+.........
T Consensus 24 ~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l~d~~~~~~~~~~~---- 93 (398)
T COG1373 24 KLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIELLDLLRAYIELKER---- 93 (398)
T ss_pred hhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhHHHHHHHHHHhhcc----
Confidence 444455555555533 69999999999999998888776322 34444333221 11222222322222111
Q ss_pred CCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCC----cccchhhhcceeEEEecCCChHHHHH
Q 021660 139 KASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQV----NKIIPALQSRCTRFRFAPLEPVHVTE 207 (309)
Q Consensus 139 ~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~----~~l~~~l~~r~~~i~~~~~~~~~~~~ 207 (309)
....+++||+++... -...+..+.+..+ . .++++++.. ....+.+..|...+.+.|++..|...
T Consensus 94 --~~~yifLDEIq~v~~-W~~~lk~l~d~~~-~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 94 --EKSYIFLDEIQNVPD-WERALKYLYDRGN-L-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred --CCceEEEecccCchh-HHHHHHHHHcccc-c-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 457899999998753 3444444444333 2 455555433 24456778889999999999988865
No 285
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.52 E-value=1.1e-05 Score=78.13 Aligned_cols=193 Identities=11% Similarity=0.113 Sum_probs=120.0
Q ss_pred cccChHHHHHHHHHHhcC---CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEe-cCCCcchHHHHHHHHHhhh
Q 021660 55 VAAHRDIVDTIDRLTSEN---RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELN-ASDDRGIDVVRQQIQDFAS 130 (309)
Q Consensus 55 ~ig~~~~~~~l~~~~~~~---~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 130 (309)
++|++..++.+...+... ...-+++.|.+|+|||.+++.+.+.+..+........++ ...+.....+.+.+++...
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 678888888887776543 333399999999999999999999985541100000011 0111111111111111100
Q ss_pred cc-------------------------------------c-------------------------cccCCCCccEEEEEe
Q 021660 131 TQ-------------------------------------S-------------------------FSFGVKASVKLVLLD 148 (309)
Q Consensus 131 ~~-------------------------------------~-------------------------~~~~~~~~~~lliiD 148 (309)
.. . ..+....++-++++|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 00 0 001112358899999
Q ss_pred CCCCCCHHHHHHHHHHHHHhc--C--CceEEEEecCCcccchhhhcc--eeEEEecCCChHHHHHHHHHHHHHcCCCCCH
Q 021660 149 EADAMTKDAQFALRRVIEKYT--K--NTRFALICNQVNKIIPALQSR--CTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222 (309)
Q Consensus 149 e~~~l~~~~~~~l~~~l~~~~--~--~~~~i~~~~~~~~l~~~l~~r--~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~ 222 (309)
|+|.+++...+.|..+++... . ...+..+.+....+.....+. ...|.+.|++..+...++...+... .....
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~-~~~~~ 240 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT-KLLPA 240 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc-ccccc
Confidence 999999999888888888664 0 111111122222222222232 4789999999999999999988552 35677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 021660 223 GGLAALVRLCNGDMRKALNILQSTHM 248 (309)
Q Consensus 223 ~~l~~i~~~~~g~~r~~~~~l~~~~~ 248 (309)
+....+.+.+.|||-.+.+.++.+..
T Consensus 241 p~~~~i~~kt~GnPfFi~e~lk~l~~ 266 (849)
T COG3899 241 PLLELIFEKTKGNPFFIEEFLKALYE 266 (849)
T ss_pred hHHHHHHHHhcCCCccHHHHHHHHHh
Confidence 88899999999999988888877765
No 286
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.51 E-value=1.8e-06 Score=85.31 Aligned_cols=156 Identities=21% Similarity=0.250 Sum_probs=102.1
Q ss_pred HHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHH---------Hhhhcc
Q 021660 62 VDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQ---------DFASTQ 132 (309)
Q Consensus 62 ~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 132 (309)
+..+.+++.-+++ +++.|.||+|||+++.++|+.. +-..+.++-+..... -..+. ++...-
T Consensus 1533 l~rVlRAmqv~kp--ilLEGsPGVGKTSlItaLAr~t-----G~kliRINLSeQTdL---~DLfGsd~Pve~~Gef~w~d 1602 (4600)
T COG5271 1533 LRRVLRAMQVGKP--ILLEGSPGVGKTSLITALARKT-----GKKLIRINLSEQTDL---CDLFGSDLPVEEGGEFRWMD 1602 (4600)
T ss_pred HHHHHHHHhcCCc--eeecCCCCccHHHHHHHHHHHh-----cCceEEeeccccchH---HHHhCCCCCcccCceeEecc
Confidence 3445555555543 9999999999999999999997 444445554432211 11111 111111
Q ss_pred ccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHh--------------cCCceEEEEecC------Ccccchhhhcce
Q 021660 133 SFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY--------------TKNTRFALICNQ------VNKIIPALQSRC 192 (309)
Q Consensus 133 ~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~--------------~~~~~~i~~~~~------~~~l~~~l~~r~ 192 (309)
.+-+..++.+..+++||+...+....+.|-..++.. .++.++..+-|+ ...+++.+..||
T Consensus 1603 apfL~amr~G~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRF 1682 (4600)
T COG5271 1603 APFLHAMRDGGWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRF 1682 (4600)
T ss_pred cHHHHHhhcCCEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhh
Confidence 111223346778999999988888888888888742 123344444343 346889999999
Q ss_pred eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 021660 193 TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRL 231 (309)
Q Consensus 193 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~ 231 (309)
.++.+..++.+++..|...+ ...+.++-...+.+.
T Consensus 1683 svV~~d~lt~dDi~~Ia~~~----yp~v~~d~~~kiik~ 1717 (4600)
T COG5271 1683 SVVKMDGLTTDDITHIANKM----YPQVNEDWRLKIIKF 1717 (4600)
T ss_pred heEEecccccchHHHHHHhh----CCccChHHHHHHHHH
Confidence 99999999999999888776 456677766666554
No 287
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.50 E-value=5.1e-06 Score=68.32 Aligned_cols=186 Identities=18% Similarity=0.180 Sum_probs=112.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHH-ccCcccccEEEEecCCCcchHHHHHHHHHhhhcccc------ccCCCCccEEEEEeC
Q 021660 77 LLLYGPPGTGKTSTILAVARKL-YGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSF------SFGVKASVKLVLLDE 149 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~lliiDe 149 (309)
+++.||.|.||+.+++.+...- ....+.-.+++++|....+...+...+......... .+-..+.+..+++||
T Consensus 211 ~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlflde 290 (531)
T COG4650 211 ILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFLDE 290 (531)
T ss_pred eEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEehHh
Confidence 9999999999999999886542 223567889999999877766555544432211110 011223678999999
Q ss_pred CCCCCHHHHHHHHHHHHHhc-----------CCceEEEEe-cCC------cccchhhhcceeEEEecCCChHHHH-----
Q 021660 150 ADAMTKDAQFALRRVIEKYT-----------KNTRFALIC-NQV------NKIIPALQSRCTRFRFAPLEPVHVT----- 206 (309)
Q Consensus 150 ~~~l~~~~~~~l~~~l~~~~-----------~~~~~i~~~-~~~------~~l~~~l~~r~~~i~~~~~~~~~~~----- 206 (309)
+..+..+.+..|++.+++.. .+..+|.-| .+. ...-+.+..|.....|.-|...+..
T Consensus 291 igelgadeqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~arinlwtf~lpgl~qr~ediep 370 (531)
T COG4650 291 IGELGADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEP 370 (531)
T ss_pred hhhcCccHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhhheeeeeccccccCccccCC
Confidence 99999888999999999642 111222211 111 1222345555555555444322221
Q ss_pred ---HHHHHHHHHcC--CCCCHHHHHHHHH-------HhcCCHHHHHHHHHHHHhhc--CCcCHHHHHhhh
Q 021660 207 ---ERLKHVIEAEG--LDVTEGGLAALVR-------LCNGDMRKALNILQSTHMAS--QQITEEAVYLCT 262 (309)
Q Consensus 207 ---~~l~~~~~~~~--~~~~~~~l~~i~~-------~~~g~~r~~~~~l~~~~~~~--~~i~~~~v~~~~ 262 (309)
--+.+.+...| +.+..++-..-.. ...||.|.+-..+..++..+ +.||.+.|+.-+
T Consensus 371 nldyelerha~~~g~~vrfntearra~l~fa~spqa~w~gnfrelsasvtrmatlad~grit~~~ve~ei 440 (531)
T COG4650 371 NLDYELERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATLADSGRITLDVVEDEI 440 (531)
T ss_pred CccHHHHHHHHhhCceeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHHHHHhcCCceeHHHHHHHH
Confidence 12455555444 3445554443333 24699999988887777655 678888776443
No 288
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.50 E-value=3.2e-07 Score=79.72 Aligned_cols=117 Identities=21% Similarity=0.231 Sum_probs=68.2
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHHccC-cccccEEEEecCCCc-------chHHHHHHHHHhhhccccccCCCCccEEE
Q 021660 74 LPHLLLYGPPGTGKTSTILAVARKLYGA-QYHNMILELNASDDR-------GIDVVRQQIQDFASTQSFSFGVKASVKLV 145 (309)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~~~~-~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 145 (309)
+..++|||++|+|||.|+..+...+..+ ....+|..+...-.. ..+.+......+. . +..||
T Consensus 62 ~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~--------~--~~~lL 131 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELA--------K--ESRLL 131 (362)
T ss_pred CceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHH--------h--cCCEE
Confidence 3459999999999999999999998542 222332222211000 0011111111211 1 56799
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCCc-c-------------cchhhhcceeEEEecCC
Q 021660 146 LLDEADAMTKDAQFALRRVIEKYTK-NTRFALICNQVN-K-------------IIPALQSRCTRFRFAPL 200 (309)
Q Consensus 146 iiDe~~~l~~~~~~~l~~~l~~~~~-~~~~i~~~~~~~-~-------------l~~~l~~r~~~i~~~~~ 200 (309)
++||++.-.....-.|..+++..-. .+++|+|+|..+ . ....|.++|.++++...
T Consensus 132 cfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~vv~ld~~ 201 (362)
T PF03969_consen 132 CFDEFQVTDIADAMILKRLFEALFKRGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCDVVELDGG 201 (362)
T ss_pred EEeeeeccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceEEEEecCC
Confidence 9999987766655556666665544 445555666443 1 12456677888877665
No 289
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.48 E-value=4e-06 Score=82.94 Aligned_cols=169 Identities=19% Similarity=0.260 Sum_probs=113.0
Q ss_pred cccccChHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhh
Q 021660 53 ADVAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAS 130 (309)
Q Consensus 53 ~~~ig~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (309)
.++|..+-+-+...+.++.. +.-.++|.||..+|||+++..+++.. +-.++.++...... +.+.+..+..
T Consensus 865 ~hyIiTPfVqkn~ln~~Ra~s~~~fP~LiQGpTSSGKTSMI~yla~~t-----ghkfVRINNHEHTd---lqeYiGTyvT 936 (4600)
T COG5271 865 EHYIITPFVQKNYLNTMRAASLSNFPLLIQGPTSSGKTSMILYLARET-----GHKFVRINNHEHTD---LQEYIGTYVT 936 (4600)
T ss_pred ceeEecHHHHHHHHHHHHHHhhcCCcEEEecCCCCCcchHHHHHHHHh-----CccEEEecCcccch---HHHHhhceee
Confidence 34666555555444443322 22239999999999999999999997 55667777655432 2233333322
Q ss_pred ccccc--cC------CCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc------------CCceE-EEEe-cCC------c
Q 021660 131 TQSFS--FG------VKASVKLVLLDEADAMTKDAQFALRRVIEKYT------------KNTRF-ALIC-NQV------N 182 (309)
Q Consensus 131 ~~~~~--~~------~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~------------~~~~~-i~~~-~~~------~ 182 (309)
.-... |. ..+++-.|++||....+.+..+.|-.++++.. +++-| +++| |++ .
T Consensus 937 dd~G~lsFkEGvLVeAlR~GyWIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK 1016 (4600)
T COG5271 937 DDDGSLSFKEGVLVEALRRGYWIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRK 1016 (4600)
T ss_pred cCCCceeeehhHHHHHHhcCcEEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchH
Confidence 21111 11 11246689999999999999999999998521 22222 3334 433 2
Q ss_pred ccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 021660 183 KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG 234 (309)
Q Consensus 183 ~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g 234 (309)
.+..+++.||..++|...+.+|+..||.. ++.+.+.-+..|++-+.|
T Consensus 1017 ~LSrAFRNRFlE~hFddipedEle~ILh~-----rc~iapSyakKiVeVyr~ 1063 (4600)
T COG5271 1017 GLSRAFRNRFLEMHFDDIPEDELEEILHG-----RCEIAPSYAKKIVEVYRG 1063 (4600)
T ss_pred HHHHHHHhhhHhhhcccCcHHHHHHHHhc-----cCccCHHHHHHHHHHHHH
Confidence 45678999999999999999999999987 457888888888887654
No 290
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.47 E-value=1.2e-05 Score=68.40 Aligned_cols=185 Identities=18% Similarity=0.187 Sum_probs=102.9
Q ss_pred cccccChHHHHHHHHHHhcCC--CCe-EEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCc-------------
Q 021660 53 ADVAAHRDIVDTIDRLTSENR--LPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR------------- 116 (309)
Q Consensus 53 ~~~ig~~~~~~~l~~~~~~~~--~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~------------- 116 (309)
..+.+++.....+..++.... .|+ ++|+|.+|||||.+++.+.+.. +...+.+++..-.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~-----n~~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL-----NLENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc-----CCcceeeehHHhccHHHHHHHHHHHh
Confidence 356678888888988887653 344 6999999999999999999997 3333333322110
Q ss_pred ------c------hHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHH---HHHHHHHHHHhcC-CceEEEEecC
Q 021660 117 ------G------IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDA---QFALRRVIEKYTK-NTRFALICNQ 180 (309)
Q Consensus 117 ------~------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~---~~~l~~~l~~~~~-~~~~i~~~~~ 180 (309)
+ ...+...+..+.+... .......-+|++|++|.+.+-. ...|+++-+-.+. ...++++...
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~--~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~ 158 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPA--ATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPS 158 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHH--hhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccc
Confidence 0 0111122222222111 1111246689999999886433 3344444443332 3444444443
Q ss_pred Ccccchhhhc--ceeEEEecCCChHHHHHHHHHHHHHcCCCCCH--------HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 021660 181 VNKIIPALQS--RCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE--------GGLAALVRLCNGDMRKALNILQSTHM 248 (309)
Q Consensus 181 ~~~l~~~l~~--r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~l~~i~~~~~g~~r~~~~~l~~~~~ 248 (309)
.++....-.+ -...++|+.++.++++.++.+---. .... -.++.+...+. |+..+...+.....
T Consensus 159 ~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~---~r~~~~ya~fl~v~l~vF~~~cr-d~~eL~~~~~~~wp 232 (438)
T KOG2543|consen 159 CEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPG---KRKLDVYAQFLHVLLQVFYMACR-DVNELRSLISLAWP 232 (438)
T ss_pred cHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCcc---ccchHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHH
Confidence 3332211011 1267899999999999998763110 1221 12233333444 88888887765553
No 291
>PRK04132 replication factor C small subunit; Provisional
Probab=98.44 E-value=1.5e-07 Score=89.41 Aligned_cols=51 Identities=47% Similarity=0.933 Sum_probs=47.9
Q ss_pred CcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHH
Q 021660 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTST 90 (309)
Q Consensus 40 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l 90 (309)
..||.++|||.+|+|++|++++++.+.+++..++.++++|+||||+||+..
T Consensus 6 ~~~~~~k~RP~~f~dIiGqe~i~~~Lk~~i~~~~i~h~l~~g~~g~~~cl~ 56 (846)
T PRK04132 6 EKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 56 (846)
T ss_pred cccHHHhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEECCCCCCcccc
Confidence 468999999999999999999999999999999999999999999999743
No 292
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.44 E-value=2.3e-06 Score=68.32 Aligned_cols=114 Identities=19% Similarity=0.288 Sum_probs=63.1
Q ss_pred HHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHH-------Hhhhcccc
Q 021660 62 VDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQ-------DFASTQSF 134 (309)
Q Consensus 62 ~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 134 (309)
...+...+.+. ....++.|+||+|||+++..+...+...+ ..++-+..+ ......+.+... .+......
T Consensus 7 ~~a~~~~l~~~-~~~~~l~G~aGtGKT~~l~~~~~~~~~~g--~~v~~~apT-~~Aa~~L~~~~~~~a~Ti~~~l~~~~~ 82 (196)
T PF13604_consen 7 REAVRAILTSG-DRVSVLQGPAGTGKTTLLKALAEALEAAG--KRVIGLAPT-NKAAKELREKTGIEAQTIHSFLYRIPN 82 (196)
T ss_dssp HHHHHHHHHCT-CSEEEEEESTTSTHHHHHHHHHHHHHHTT----EEEEESS-HHHHHHHHHHHTS-EEEHHHHTTEECC
T ss_pred HHHHHHHHhcC-CeEEEEEECCCCCHHHHHHHHHHHHHhCC--CeEEEECCc-HHHHHHHHHhhCcchhhHHHHHhcCCc
Confidence 34444444443 23488999999999999999988886544 233333333 233333333211 11111111
Q ss_pred ccC----CCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCC
Q 021660 135 SFG----VKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQV 181 (309)
Q Consensus 135 ~~~----~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~ 181 (309)
... ......+|||||+..++......|+..+.. ....+|++++..
T Consensus 83 ~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 83 GDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp EECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred ccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 000 012457999999999988777777777664 356788888644
No 293
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.43 E-value=3.5e-06 Score=70.49 Aligned_cols=160 Identities=14% Similarity=0.181 Sum_probs=91.7
Q ss_pred ccccChHHHHHHHHHHh----cCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCc---chHHHHHHHH
Q 021660 54 DVAAHRDIVDTIDRLTS----ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR---GIDVVRQQIQ 126 (309)
Q Consensus 54 ~~ig~~~~~~~l~~~~~----~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 126 (309)
.+.|.....+.+..+++ .+....+++.||.|+|||.++.........-+.+.-.+.+++.-.. ....+...+.
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~ 104 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLA 104 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHH
Confidence 46777666666666655 4555669999999999999998777774333445555666665433 1111111111
Q ss_pred Hhhhcccccc------------------CCCCccEEEEEeCCCCCCHHH-HHHHHHHHHHhc---CCceEEEEecCC---
Q 021660 127 DFASTQSFSF------------------GVKASVKLVLLDEADAMTKDA-QFALRRVIEKYT---KNTRFALICNQV--- 181 (309)
Q Consensus 127 ~~~~~~~~~~------------------~~~~~~~lliiDe~~~l~~~~-~~~l~~~l~~~~---~~~~~i~~~~~~--- 181 (309)
.-.......+ .....+.++|+||+|...+-. +-.|+++++-.. ...++|.+|...
T Consensus 105 ~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~l 184 (408)
T KOG2228|consen 105 LELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDIL 184 (408)
T ss_pred HHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHH
Confidence 1111000001 111235678888999876544 555666666322 223445555444
Q ss_pred cccchhhhcce--eEEEe-cCCChHHHHHHHHHHH
Q 021660 182 NKIIPALQSRC--TRFRF-APLEPVHVTERLKHVI 213 (309)
Q Consensus 182 ~~l~~~l~~r~--~~i~~-~~~~~~~~~~~l~~~~ 213 (309)
+.+.+..++|| ..|.+ ++.+..+...+++..+
T Consensus 185 E~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 185 ELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 35567788898 33444 4445677888777765
No 294
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.42 E-value=1.6e-06 Score=62.12 Aligned_cols=72 Identities=22% Similarity=0.433 Sum_probs=43.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCc---ccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCC
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQ---YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAM 153 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l 153 (309)
+.|+||||+|||++++.+++.+.... ....+...+... +-+ .. + .+..++++||+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~----~~w----~g--------Y---~~q~vvi~DD~~~~ 61 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGD----KFW----DG--------Y---QGQPVVIIDDFGQD 61 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCcc----chh----hc--------c---CCCcEEEEeecCcc
Confidence 57999999999999999999884322 111111111111 111 00 1 14578999999877
Q ss_pred CHH----HHHHHHHHHHH
Q 021660 154 TKD----AQFALRRVIEK 167 (309)
Q Consensus 154 ~~~----~~~~l~~~l~~ 167 (309)
... ....+++++..
T Consensus 62 ~~~~~~~~~~~l~~l~s~ 79 (107)
T PF00910_consen 62 NDGYNYSDESELIRLISS 79 (107)
T ss_pred ccccchHHHHHHHHHHhc
Confidence 643 45566666664
No 295
>PTZ00202 tuzin; Provisional
Probab=98.39 E-value=5.2e-05 Score=66.53 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=43.0
Q ss_pred CCCCccccccChHHHHHHHHHHhcCCC---CeEEEECCCCCcHHHHHHHHHHHH
Q 021660 48 RPQSLADVAAHRDIVDTIDRLTSENRL---PHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 48 ~p~~~~~~ig~~~~~~~l~~~~~~~~~---~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.|....+|+|++..+..+...+..... ..++|+|++|+|||++++.+...+
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l 310 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE 310 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC
Confidence 466678999999999999999875332 248999999999999999999876
No 296
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.39 E-value=3.9e-08 Score=84.98 Aligned_cols=157 Identities=22% Similarity=0.218 Sum_probs=78.2
Q ss_pred hhhhcCCCCccccccChHHHHHHHHHHhcCC------------CCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEE
Q 021660 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENR------------LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (309)
Q Consensus 43 ~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~------------~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 110 (309)
+.+.+.| .+.|++.++..+.-.+-++. .-|+||.|.||+|||.+++.+++... ...+...
T Consensus 18 l~~s~aP----~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~p----r~v~~~g 89 (331)
T PF00493_consen 18 LANSIAP----SIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAP----RSVYTSG 89 (331)
T ss_dssp CHHHCSS----TTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-S----SEEEEEC
T ss_pred HHHHhCC----cCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCC----ceEEECC
Confidence 3445555 67788888776654443321 12599999999999999997765541 1111111
Q ss_pred ecCCCcch--HHHHHH--HHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHh-------------cCCce
Q 021660 111 NASDDRGI--DVVRQQ--IQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-------------TKNTR 173 (309)
Q Consensus 111 ~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~-------------~~~~~ 173 (309)
......+. ...+.. -....+.... ..+.+++++|||++.+..+....|.++|+.. +..+.
T Consensus 90 ~~~s~~gLta~~~~d~~~~~~~leaGal---vlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~s 166 (331)
T PF00493_consen 90 KGSSAAGLTASVSRDPVTGEWVLEAGAL---VLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCS 166 (331)
T ss_dssp CGSTCCCCCEEECCCGGTSSECEEE-HH---HHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---E
T ss_pred CCcccCCccceeccccccceeEEeCCch---hcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchhh
Confidence 11110000 000000 0000000000 0125789999999999999999999999962 34566
Q ss_pred EEEEecCCc-------------ccchhhhcceeEE-E-ecCCChHHHHHHHH
Q 021660 174 FALICNQVN-------------KIIPALQSRCTRF-R-FAPLEPVHVTERLK 210 (309)
Q Consensus 174 ~i~~~~~~~-------------~l~~~l~~r~~~i-~-~~~~~~~~~~~~l~ 210 (309)
++.++|+.. .+++.+.+||..+ . ...++.+.-..+.+
T Consensus 167 vlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~ 218 (331)
T PF00493_consen 167 VLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAE 218 (331)
T ss_dssp EEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHH
T ss_pred hHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccce
Confidence 777776443 3567889999443 3 35555433333333
No 297
>PRK10536 hypothetical protein; Provisional
Probab=98.38 E-value=1.5e-05 Score=65.31 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=33.9
Q ss_pred cccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHH
Q 021660 53 ADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 53 ~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
..+.+.......+..++... ..++++||+|||||+++.+++.+.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~ 98 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHH
Confidence 34555666666666677664 469999999999999999999863
No 298
>PRK04296 thymidine kinase; Provisional
Probab=98.38 E-value=3.3e-06 Score=67.10 Aligned_cols=95 Identities=16% Similarity=0.245 Sum_probs=53.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCcccccEEE--EecCCC-------cch-------HHHHHHHHHhhhccccccCCCC
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILE--LNASDD-------RGI-------DVVRQQIQDFASTQSFSFGVKA 140 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~--~~~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~ 140 (309)
.+++||+|+||||++..++.++...+..+.++. ++.... .+. ......+..+.. ...
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-------~~~ 77 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-------EGE 77 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-------hCC
Confidence 789999999999999999988865554433331 111110 000 001111111111 111
Q ss_pred ccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecC
Q 021660 141 SVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (309)
Q Consensus 141 ~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~ 180 (309)
+..+|+|||++.+..+....+.+.+. +....+|+++..
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~ 115 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLD 115 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecC
Confidence 46799999999987665444454443 335566666643
No 299
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=98.32 E-value=7.6e-06 Score=62.35 Aligned_cols=106 Identities=15% Similarity=0.129 Sum_probs=67.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCC-CcchHHH--------------------------HHHHHHh
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD-DRGIDVV--------------------------RQQIQDF 128 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------------------------~~~~~~~ 128 (309)
.+.+|+++|.|||++|..++-+..+.+..+.++++--.. ..+.... .......
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~~ 83 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAEG 83 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHHH
Confidence 478889999999999999999988888777776665442 1110000 0000100
Q ss_pred hhccccccCCCCccEEEEEeCCCCCCH---HHHHHHHHHHHHhcCCceEEEEecCCc
Q 021660 129 ASTQSFSFGVKASVKLVLLDEADAMTK---DAQFALRRVIEKYTKNTRFALICNQVN 182 (309)
Q Consensus 129 ~~~~~~~~~~~~~~~lliiDe~~~l~~---~~~~~l~~~l~~~~~~~~~i~~~~~~~ 182 (309)
...... .-......+|||||+..... -..+.++++++..+....+|+|++..+
T Consensus 84 ~~~a~~-~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 84 WAFAKE-AIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHH-HHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 000000 00112578999999865422 125778999999998999999997654
No 300
>PHA02624 large T antigen; Provisional
Probab=98.31 E-value=3.9e-06 Score=76.18 Aligned_cols=119 Identities=17% Similarity=0.163 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhccccccCC
Q 021660 60 DIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGV 138 (309)
Q Consensus 60 ~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (309)
.....++.++.+-+..+ ++|+||+|+|||+++..+++.+ +...+.++++..... -+.+- +
T Consensus 416 ~~~~~lk~~l~giPKk~~il~~GPpnTGKTtf~~sLl~~L-----~G~vlsVNsPt~ks~-FwL~p---l---------- 476 (647)
T PHA02624 416 VIYDILKLIVENVPKRRYWLFKGPVNSGKTTLAAALLDLC-----GGKSLNVNCPPDKLN-FELGC---A---------- 476 (647)
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHc-----CCeEEEeeCCcchhH-HHhhh---h----------
Confidence 34445555555544444 9999999999999999999998 333444665543221 11111 1
Q ss_pred CCccEEEEEeCCCCCCH-----------HHHHHHHHHHHHh-c-------------CCceEEEEecCCcccchhhhcce-
Q 021660 139 KASVKLVLLDEADAMTK-----------DAQFALRRVIEKY-T-------------KNTRFALICNQVNKIIPALQSRC- 192 (309)
Q Consensus 139 ~~~~~lliiDe~~~l~~-----------~~~~~l~~~l~~~-~-------------~~~~~i~~~~~~~~l~~~l~~r~- 192 (309)
....+++||++..-.. +....|.+.++.. + .-++.|+|+|+ +.++.++.-||
T Consensus 477 -~D~~~~l~dD~t~~~~~~~~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~ 554 (647)
T PHA02624 477 -IDQFMVVFEDVKGQPADNKDLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFA 554 (647)
T ss_pred -hhceEEEeeeccccccccccCCcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHH
Confidence 1467899999853221 1124566666643 1 12355666665 47788898898
Q ss_pred eEEEecC
Q 021660 193 TRFRFAP 199 (309)
Q Consensus 193 ~~i~~~~ 199 (309)
.++.|.+
T Consensus 555 ~~~~F~~ 561 (647)
T PHA02624 555 KVLDFKP 561 (647)
T ss_pred Hhccccc
Confidence 7777744
No 301
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.28 E-value=7.7e-05 Score=65.33 Aligned_cols=94 Identities=20% Similarity=0.270 Sum_probs=54.0
Q ss_pred HHhcCCCCeEEEECCCCCcHHHHHHHHHHH-HccCcccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEE
Q 021660 68 LTSENRLPHLLLYGPPGTGKTSTILAVARK-LYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVL 146 (309)
Q Consensus 68 ~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lli 146 (309)
++..+ -|+++.||+|||||+++..+... ....| .......+-..+.. .. ++.-....+|+
T Consensus 205 fve~~--~Nli~lGp~GTGKThla~~l~~~~a~~sG-----------~f~T~a~Lf~~L~~---~~---lg~v~~~DlLI 265 (449)
T TIGR02688 205 LVEPN--YNLIELGPKGTGKSYIYNNLSPYVILISG-----------GTITVAKLFYNIST---RQ---IGLVGRWDVVA 265 (449)
T ss_pred HHhcC--CcEEEECCCCCCHHHHHHHHhHHHHHHcC-----------CcCcHHHHHHHHHH---HH---HhhhccCCEEE
Confidence 44443 56999999999999999998877 21122 00111111111111 00 11112578999
Q ss_pred EeCCCCCCH----HHHHHHHHHHHHh---------cCCceEEEEecC
Q 021660 147 LDEADAMTK----DAQFALRRVIEKY---------TKNTRFALICNQ 180 (309)
Q Consensus 147 iDe~~~l~~----~~~~~l~~~l~~~---------~~~~~~i~~~~~ 180 (309)
|||+..++- +..+.+...|+.- ..+..+++++|-
T Consensus 266 ~DEvgylp~~~~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi 312 (449)
T TIGR02688 266 FDEVATLKFAKPKELIGILKNYMESGSFTRGDETKSSDASFVFLGNV 312 (449)
T ss_pred EEcCCCCcCCchHHHHHHHHHHHHhCceeccceeeeeeeEEEEEccc
Confidence 999998653 2346666667642 234566776653
No 302
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.27 E-value=1.2e-05 Score=70.94 Aligned_cols=133 Identities=23% Similarity=0.321 Sum_probs=80.6
Q ss_pred ccccccChHHHHHHHHHHhcCCCC------------eEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchH
Q 021660 52 LADVAAHRDIVDTIDRLTSENRLP------------HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 119 (309)
Q Consensus 52 ~~~~ig~~~~~~~l~~~~~~~~~~------------~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (309)
...+.|+..+++.+.=++.++... ++||.|.||+.|+.|++-+-+.. . +-...+.+..+..
T Consensus 330 APSIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvs-----P--IaVYTSGKGSSAA 402 (729)
T KOG0481|consen 330 APSIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVS-----P--IAVYTSGKGSSAA 402 (729)
T ss_pred CchhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcC-----c--eEEEecCCCcccc
Confidence 346789999999888777655211 39999999999999999886653 1 1111222211111
Q ss_pred HHH-HHHH-----H-hhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc-------------CCceEEEEec
Q 021660 120 VVR-QQIQ-----D-FASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-------------KNTRFALICN 179 (309)
Q Consensus 120 ~~~-~~~~-----~-~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~-------------~~~~~i~~~~ 179 (309)
-+. +.++ . ..+.....+ +.+++++|||+|++.++..-++.+.|+... ..+.++.++|
T Consensus 403 GLTASV~RD~~tReFylEGGAMVL---ADgGVvCIDEFDKMre~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAAN 479 (729)
T KOG0481|consen 403 GLTASVIRDPSTREFYLEGGAMVL---ADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAAN 479 (729)
T ss_pred cceeeEEecCCcceEEEecceEEE---ecCCEEEeehhhccCchhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcC
Confidence 110 0000 0 111111111 257899999999999999999999999632 3444555555
Q ss_pred CCc-------------ccchhhhcceeE
Q 021660 180 QVN-------------KIIPALQSRCTR 194 (309)
Q Consensus 180 ~~~-------------~l~~~l~~r~~~ 194 (309)
... ...+.+++||..
T Consensus 480 pvfGRyDd~Kt~~dNIDf~~TILSRFDm 507 (729)
T KOG0481|consen 480 PVFGRYDDTKTGEDNIDFMPTILSRFDM 507 (729)
T ss_pred CccccccccCCcccccchhhhHhhhccE
Confidence 332 234778888844
No 303
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.26 E-value=4.5e-05 Score=63.69 Aligned_cols=151 Identities=19% Similarity=0.262 Sum_probs=91.8
Q ss_pred cccChHHHHHHHHH---HhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhc
Q 021660 55 VAAHRDIVDTIDRL---TSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAST 131 (309)
Q Consensus 55 ~ig~~~~~~~l~~~---~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (309)
+|--+++++.+.+. +.. ..+|+++.|.+|+||+++++..+.-. +..+.++..+...+...+++.++.....
T Consensus 10 lVlf~~ai~hi~ri~RvL~~-~~Gh~LLvG~~GsGr~sl~rLaa~i~-----~~~~~~i~~~~~y~~~~f~~dLk~~~~~ 83 (268)
T PF12780_consen 10 LVLFDEAIEHIARISRVLSQ-PRGHALLVGVGGSGRQSLARLAAFIC-----GYEVFQIEITKGYSIKDFKEDLKKALQK 83 (268)
T ss_dssp ----HHHHHHHHHHHHHHCS-TTEEEEEECTTTSCHHHHHHHHHHHT-----TEEEE-TTTSTTTHHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHHcC-CCCCeEEecCCCccHHHHHHHHHHHh-----ccceEEEEeeCCcCHHHHHHHHHHHHHH
Confidence 44445666654444 443 34679999999999999999777665 6677777777666777777777666543
Q ss_pred cccccCCCCccEEEEEeCCCCCCHHHH---------------------HHHH---------------------HHHHHhc
Q 021660 132 QSFSFGVKASVKLVLLDEADAMTKDAQ---------------------FALR---------------------RVIEKYT 169 (309)
Q Consensus 132 ~~~~~~~~~~~~lliiDe~~~l~~~~~---------------------~~l~---------------------~~l~~~~ 169 (309)
... +..+.+++++|-+...+... +.+. ..+++..
T Consensus 84 ag~----~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F~~rvr 159 (268)
T PF12780_consen 84 AGI----KGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFFIERVR 159 (268)
T ss_dssp HHC----S-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHHHHHHC
T ss_pred Hhc----cCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHHHHHHH
Confidence 222 22577888888665432211 1111 1122233
Q ss_pred CCceEEEEecCCc-------ccchhhhcceeEEEecCCChHHHHHHHHHHHHH
Q 021660 170 KNTRFALICNQVN-------KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA 215 (309)
Q Consensus 170 ~~~~~i~~~~~~~-------~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~ 215 (309)
.+..+|++-++.. ...|++.++|.+.-|.+++.+.+..+-.+.+..
T Consensus 160 ~nLHivl~~sp~~~~~r~~~~~fPaL~~~ctIdW~~~W~~eaL~~Va~~~l~~ 212 (268)
T PF12780_consen 160 KNLHIVLCMSPVGPNFRDRCRSFPALVNCCTIDWFDPWPEEALLSVANKFLSD 212 (268)
T ss_dssp CCEEEEEEESTTTTCCCHHHHHHCCHHHHSEEEEEES--HHHHHHHHHHHCCH
T ss_pred hheeEEEEECCCCchHHHHHHhCcchhcccEEEeCCcCCHHHHHHHHHHHHHh
Confidence 4556777665433 234678888889999999999998887776654
No 304
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=98.20 E-value=0.00013 Score=62.60 Aligned_cols=48 Identities=19% Similarity=0.075 Sum_probs=37.9
Q ss_pred EEEecCCChHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhcCCHHHHHH
Q 021660 194 RFRFAPLEPVHVTERLKHVIEAEGL---DVTEGGLAALVRLCNGDMRKALN 241 (309)
Q Consensus 194 ~i~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~l~~i~~~~~g~~r~~~~ 241 (309)
.+++++++.+|.+.+++-+....-+ ..++...+.+.-.++|||+.+.+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el~k 308 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRELEK 308 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHhcc
Confidence 8899999999999999877665433 34566777788888999998753
No 305
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=98.18 E-value=1.1e-05 Score=69.21 Aligned_cols=137 Identities=20% Similarity=0.266 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhccccccCC
Q 021660 60 DIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGV 138 (309)
Q Consensus 60 ~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (309)
..+..++.++++-+..+ ++|+|||+||||.++..+.+-+ ...++.+..+... -+ +.+
T Consensus 247 ~Fl~~lk~~Lkg~PKKnClvi~GPPdTGKS~F~~SLi~Fl-----~GkViSf~Ns~Sh---FW--------------LqP 304 (432)
T PF00519_consen 247 SFLIALKQFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFL-----KGKVISFVNSKSH---FW--------------LQP 304 (432)
T ss_dssp HHHHHHHHHHHTBTTSSEEEEESSCCCSHHHHHHHHHHHH-----TSEEE-GGGTTSC---GG--------------GGG
T ss_pred HHHHHHHHHHhCCCcccEEEEECCCCCchhHHHHHHHHHh-----CCEEEEecCCCCc---cc--------------ccc
Confidence 45667788887755555 9999999999999999999998 3334433222211 01 111
Q ss_pred CCccEEEEEeCCCCCCHHHH-HHHHHHHHHhc-------------CCceEEEEecCC---cccchhhhcceeEEEecCC-
Q 021660 139 KASVKLVLLDEADAMTKDAQ-FALRRVIEKYT-------------KNTRFALICNQV---NKIIPALQSRCTRFRFAPL- 200 (309)
Q Consensus 139 ~~~~~lliiDe~~~l~~~~~-~~l~~~l~~~~-------------~~~~~i~~~~~~---~~l~~~l~~r~~~i~~~~~- 200 (309)
....++-+|||+..-.-... ..|.++++..+ ..++++++||.. +.-..-|.+|...+.|+.+
T Consensus 305 L~d~Ki~llDDAT~~cW~Y~D~ylRNaLDGN~vsiD~KHkap~Qik~PPLlITsN~dv~~~~~~~YLhSRi~~f~F~n~~ 384 (432)
T PF00519_consen 305 LADAKIALLDDATYPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKKDDRWKYLHSRITCFEFPNPF 384 (432)
T ss_dssp GCT-SSEEEEEE-HHHHHHHHHHTHHHHCTSEEEEEESSSEEEEEE---EEEEESS-TTTSCCCHHHCTTEEEEE--S-S
T ss_pred hhcCcEEEEcCCcccHHHHHHHHHHhccCCCeeeeeccCCCceEeecCceEEecCCCCCcchhhhhhhheEEEEEcCCcc
Confidence 12567899999854322222 22445555322 235677787643 2345678899988887543
Q ss_pred ------------ChHHHHHHHHHHHHHcCC
Q 021660 201 ------------EPVHVTERLKHVIEAEGL 218 (309)
Q Consensus 201 ------------~~~~~~~~l~~~~~~~~~ 218 (309)
+....+.++++...+.++
T Consensus 385 P~d~~G~P~y~ltd~~WksFF~rlw~~LdL 414 (432)
T PF00519_consen 385 PLDENGNPVYELTDANWKSFFRRLWSQLDL 414 (432)
T ss_dssp -BSTTSSBSS---HHHHHHHHHHHTCCCT-
T ss_pred ccCCCCCeeEEeccChHHHHHHHHHHhcCC
Confidence 245566667666554443
No 306
>PRK13695 putative NTPase; Provisional
Probab=98.18 E-value=0.00011 Score=57.50 Aligned_cols=69 Identities=12% Similarity=0.222 Sum_probs=41.5
Q ss_pred ccEEEEEeCCCCCC---HHHHHHHHHHHHHhcCCceEEEEecCCc--ccchhhhcc--eeEEEecCCChHHHHHHHHHH
Q 021660 141 SVKLVLLDEADAMT---KDAQFALRRVIEKYTKNTRFALICNQVN--KIIPALQSR--CTRFRFAPLEPVHVTERLKHV 212 (309)
Q Consensus 141 ~~~lliiDe~~~l~---~~~~~~l~~~l~~~~~~~~~i~~~~~~~--~l~~~l~~r--~~~i~~~~~~~~~~~~~l~~~ 212 (309)
++.++++||+..+. ....+.+..+++ ....+|++++... .....+..+ +.++++.+-+.+++...+..+
T Consensus 96 ~~~~lllDE~~~~e~~~~~~~~~l~~~~~---~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~~ 171 (174)
T PRK13695 96 EADVIIIDEIGKMELKSPKFVKAVEEVLD---SEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILNR 171 (174)
T ss_pred CCCEEEEECCCcchhhhHHHHHHHHHHHh---CCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHHH
Confidence 57899999975442 233444555552 2456777776532 334455555 377888777777776655544
No 307
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.17 E-value=2.6e-05 Score=60.46 Aligned_cols=99 Identities=19% Similarity=0.295 Sum_probs=57.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCc--ch-HHHH-------------HHHHHhhhccccccCC
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR--GI-DVVR-------------QQIQDFASTQSFSFGV 138 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~-------------~~~~~~~~~~~~~~~~ 138 (309)
..+.|.||+|+|||||++.++......... +.++..... .. .... ...-.+... +
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~---v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~lara----l-- 97 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYKPDSGE---ILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARA----L-- 97 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeE---EEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHH----H--
Confidence 448999999999999999998876322211 111111100 00 0000 000011111 1
Q ss_pred CCccEEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CceEEEEecCCc
Q 021660 139 KASVKLVLLDEA-DAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (309)
Q Consensus 139 ~~~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~-~~~~i~~~~~~~ 182 (309)
..++.++++||. ..+.......+.+++.+... ...+|+++++..
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 143 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD 143 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 126889999995 46777788888888876643 456666776554
No 308
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=98.17 E-value=5e-05 Score=65.13 Aligned_cols=220 Identities=13% Similarity=0.151 Sum_probs=109.5
Q ss_pred ccccc-ChHHHHHHHHHHh----c-CCCCe-EEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHH
Q 021660 53 ADVAA-HRDIVDTIDRLTS----E-NRLPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQI 125 (309)
Q Consensus 53 ~~~ig-~~~~~~~l~~~~~----~-~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (309)
.++.+ .++....+.+++. . ..... ++++|+.|+|||+++..+...+ +.. ........ . +
T Consensus 48 ~~~~~~d~~~~~~l~~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~~~l~~l~-G~~----~~~~~~~~--~-------~ 113 (304)
T TIGR01613 48 LETFGGDNELIEYLQRVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQNLLSNLL-GDY----ATTAVASL--K-------M 113 (304)
T ss_pred HHHhCCCHHHHHHHHHHHhHHhcCCCCceEEEEEECCCCCcHHHHHHHHHHHh-Chh----hccCCcch--h-------h
Confidence 34444 3345666666643 2 12222 8999999999999999887665 211 11100000 0 0
Q ss_pred HHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHH--------------hcCCceEEEEecCCccc---chhh
Q 021660 126 QDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEK--------------YTKNTRFALICNQVNKI---IPAL 188 (309)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~--------------~~~~~~~i~~~~~~~~l---~~~l 188 (309)
.++. ......+...++++++.||++.-.....+.|..+... ......+|+++|..+.+ ..++
T Consensus 114 ~~~~-~~~f~~a~l~gk~l~~~~E~~~~~~~~~~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~~~~~a~ 192 (304)
T TIGR01613 114 NEFQ-EHRFGLARLEGKRAVIGDEVQKGYRDDESTFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPRIRGFDGGI 192 (304)
T ss_pred hhcc-CCCchhhhhcCCEEEEecCCCCCccccHHhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCccCCCChhh
Confidence 0000 0011122223688999999874322233444444431 11345688888887655 3578
Q ss_pred hcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcCHHHHHhhhCC--CC
Q 021660 189 QSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGN--PL 266 (309)
Q Consensus 189 ~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~--~~ 266 (309)
.+|+.+|.|...-+.+- -+++..+.+.+..+|-+.-++..+......+.-...+.+.++... ..
T Consensus 193 ~RR~~vi~f~~~~~~~~--------------~d~~l~~kl~~E~~~il~w~l~g~~~~~~~~~~~~p~~~~~~~~~~~~~ 258 (304)
T TIGR01613 193 KRRLRIIPFTKVFPGEK--------------KNKALKEDYINEKDVILYWAVEGIRLDQRIGDFSIPKAVLEATEEYKEE 258 (304)
T ss_pred eeeEEEEeccCcCCccc--------------cCccHHHHHHHhHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHH
Confidence 89998888853322110 012222223223333444444444433222211112333333321 22
Q ss_pred hHHHHHHHHHHhcC------CHHHHHHHHHHHHHhcCCCHH
Q 021660 267 PKDIEQISYWLLNE------SFADSFKRISEMKMRKGLALV 301 (309)
Q Consensus 267 ~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~ 301 (309)
.+.+.++++..+.. ....++..+..|+.+.|..|.
T Consensus 259 ~d~v~~Fi~e~~~~~~~~~~~~~~ly~~y~~wc~~~g~~~~ 299 (304)
T TIGR01613 259 NDVVARFLEECCDDSEGEKVPVRFVYEAYKEWCEEGGYPIL 299 (304)
T ss_pred CCcHHHHHHhheEeCCCcEEEHHHHHHHHHHHHHHcCCCcc
Confidence 23455555554432 235688889999988887653
No 309
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=98.16 E-value=0.0003 Score=57.41 Aligned_cols=139 Identities=14% Similarity=0.206 Sum_probs=75.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcc---------------hHHHH-------HHHHHhhhccc
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG---------------IDVVR-------QQIQDFASTQS 133 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~-------~~~~~~~~~~~ 133 (309)
++++.|++|+|||+++..+...+.... ..++.+....... .+.+. ..+.+......
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f--~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~~ 92 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKF--DHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKSP 92 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccC--CEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhhc
Confidence 499999999999999999988764322 1222222221110 11111 11112211111
Q ss_pred cccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHh-cCCceEEEEecCCcccchhhhcceeEEEecCCChHHHHHHHHHH
Q 021660 134 FSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-TKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212 (309)
Q Consensus 134 ~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~ 212 (309)
......+.+||+||+..- .-....+..++... .-+..+|+++-....+++.++.....+-+-..+..++..+++..
T Consensus 93 --~~k~~~~~LiIlDD~~~~-~~k~~~l~~~~~~gRH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~~~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 93 --QKKNNPRFLIILDDLGDK-KLKSKILRQFFNNGRHYNISIIFLSQSYFHLPPNIRSNIDYFIIFNNSKRDLENIYRNM 169 (241)
T ss_pred --ccCCCCCeEEEEeCCCCc-hhhhHHHHHHHhcccccceEEEEEeeecccCCHHHhhcceEEEEecCcHHHHHHHHHhc
Confidence 011124779999998541 11223355555432 23556777787788889988777744443356777776666554
Q ss_pred HHHcCCCCCHH
Q 021660 213 IEAEGLDVTEG 223 (309)
Q Consensus 213 ~~~~~~~~~~~ 223 (309)
++..+.+
T Consensus 170 ----~~~~~~~ 176 (241)
T PF04665_consen 170 ----NIKGPKE 176 (241)
T ss_pred ----ccccchH
Confidence 4444444
No 310
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.16 E-value=2.5e-05 Score=60.29 Aligned_cols=26 Identities=35% Similarity=0.673 Sum_probs=22.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCc
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQ 102 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~ 102 (309)
++|+||||+|||+++..++......+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~ 27 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKG 27 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcC
Confidence 68999999999999999999885433
No 311
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.12 E-value=9e-06 Score=58.81 Aligned_cols=59 Identities=17% Similarity=0.173 Sum_probs=42.9
Q ss_pred cccccChHHHHHHHH----HHhcCCCCe---EEEECCCCCcHHHHHHHHHHHHccCcccccEEEEe
Q 021660 53 ADVAAHRDIVDTIDR----LTSENRLPH---LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELN 111 (309)
Q Consensus 53 ~~~ig~~~~~~~l~~----~~~~~~~~~---~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 111 (309)
..+.||.-+.+.+.+ .+.+..+.. +-|.|++|||||.+++.+|+.+...+....++...
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f 90 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQF 90 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCceeee
Confidence 467888766665444 444432222 67999999999999999999998888777666543
No 312
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=98.12 E-value=3.3e-05 Score=69.20 Aligned_cols=151 Identities=17% Similarity=0.177 Sum_probs=94.7
Q ss_pred cccccChHHHHHHHHHHhcCC-----------CC-eEEEECCCCCcHHHHHHHHHHHHcc----CcccccEEE----Eec
Q 021660 53 ADVAAHRDIVDTIDRLTSENR-----------LP-HLLLYGPPGTGKTSTILAVARKLYG----AQYHNMILE----LNA 112 (309)
Q Consensus 53 ~~~ig~~~~~~~l~~~~~~~~-----------~~-~~ll~G~~G~GKT~l~~~l~~~~~~----~~~~~~~~~----~~~ 112 (309)
..+.|++.+++.+.-++-++. .. ++|+.|-|.+.||.|++.+.+...- .|.+..-+- +..
T Consensus 301 PSI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVTt 380 (818)
T KOG0479|consen 301 PSIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVTT 380 (818)
T ss_pred cccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEee
Confidence 367899999998887765431 11 3999999999999999999887521 111111111 111
Q ss_pred CCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHH-------------hcCCceEEEEec
Q 021660 113 SDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEK-------------YTKNTRFALICN 179 (309)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~-------------~~~~~~~i~~~~ 179 (309)
....+. ..++ .....++ .++|++|||+|+++.-..-++.++|+. .+..|.++.++|
T Consensus 381 D~eTGE----RRLE----AGAMVLA---DRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAAN 449 (818)
T KOG0479|consen 381 DQETGE----RRLE----AGAMVLA---DRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAAN 449 (818)
T ss_pred ccccch----hhhh----cCceEEc---cCceEEehhcccccchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecC
Confidence 111111 1121 1111122 588999999999998888999999995 345778888887
Q ss_pred CCc-------------ccchhhhcce--eEEEecCCChHHHHHHHHHHHH
Q 021660 180 QVN-------------KIIPALQSRC--TRFRFAPLEPVHVTERLKHVIE 214 (309)
Q Consensus 180 ~~~-------------~l~~~l~~r~--~~i~~~~~~~~~~~~~l~~~~~ 214 (309)
+.+ .++..|++|| ..+-+...+.+.-+.+-.+.++
T Consensus 450 PvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVLR 499 (818)
T KOG0479|consen 450 PVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHVLR 499 (818)
T ss_pred ccccccCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHHHHH
Confidence 543 4678899999 3344555554443444444443
No 313
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.10 E-value=1.1e-05 Score=64.26 Aligned_cols=37 Identities=14% Similarity=0.417 Sum_probs=22.2
Q ss_pred ccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecC
Q 021660 141 SVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (309)
Q Consensus 141 ~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~ 180 (309)
...+|||||++.+++.. +..++-+...++.+|++++.
T Consensus 119 ~~~~iIvDEaQN~t~~~---~k~ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 119 DNAFIIVDEAQNLTPEE---LKMILTRIGEGSKIIITGDP 155 (205)
T ss_dssp -SEEEEE-SGGG--HHH---HHHHHTTB-TT-EEEEEE--
T ss_pred cceEEEEecccCCCHHH---HHHHHcccCCCcEEEEecCc
Confidence 46799999999998755 44456666678889888753
No 314
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=3.2e-05 Score=73.66 Aligned_cols=190 Identities=13% Similarity=0.168 Sum_probs=116.8
Q ss_pred ccccccC-hHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccc-----cEEEEecCC----CcchHHH
Q 021660 52 LADVAAH-RDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHN-----MILELNASD----DRGIDVV 121 (309)
Q Consensus 52 ~~~~ig~-~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~-----~~~~~~~~~----~~~~~~~ 121 (309)
++.++|+ ++..+.+.+.+......|-+|.|.||+|||.++..+++.+....... .+..++... ...-.++
T Consensus 185 ldPvigr~deeirRvi~iL~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~ 264 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEF 264 (898)
T ss_pred CCCccCCchHHHHHHHHHHhccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHH
Confidence 5778888 78888888888777767899999999999999999999985443221 222222211 1122334
Q ss_pred HHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHH--------HHHHHHHHHHhcCCceEEEEec-CC----cccchhh
Q 021660 122 RQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDA--------QFALRRVIEKYTKNTRFALICN-QV----NKIIPAL 188 (309)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~--------~~~l~~~l~~~~~~~~~i~~~~-~~----~~l~~~l 188 (309)
...++........ ..++-||+|||++.+.... .+.|...+... ...+|.+|+ .. -..+|++
T Consensus 265 E~rlk~l~k~v~~----~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~rg--~l~~IGatT~e~Y~k~iekdPal 338 (898)
T KOG1051|consen 265 EERLKELLKEVES----GGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLARG--GLWCIGATTLETYRKCIEKDPAL 338 (898)
T ss_pred HHHHHHHHHHHhc----CCCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhcC--CeEEEecccHHHHHHHHhhCcch
Confidence 4445544432111 1157789999999886332 23333333322 256677654 22 2456889
Q ss_pred hcceeEEEecCCChHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHh------cCCHHHHHHHHHHHH
Q 021660 189 QSRCTRFRFAPLEPVHVTERLKHVIEA----EGLDVTEGGLAALVRLC------NGDMRKALNILQSTH 247 (309)
Q Consensus 189 ~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~l~~i~~~~------~g~~r~~~~~l~~~~ 247 (309)
.+|++.+.++-|+..+...++.....+ .|..+++.++...+..+ .+-+..+++..+.++
T Consensus 339 Errw~l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl~dEa~ 407 (898)
T KOG1051|consen 339 ERRWQLVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAIDLEDEAA 407 (898)
T ss_pred hhCcceeEeccCcccchhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchhcccHHHHHH
Confidence 999988889889988777777665544 35556655554444433 244555555555444
No 315
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.05 E-value=9.7e-05 Score=55.92 Aligned_cols=97 Identities=19% Similarity=0.214 Sum_probs=57.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccCcccccE-----EEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeC
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMI-----LELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDE 149 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe 149 (309)
..+.|.||+|+||||+++.++.........+.+ +.+... ..+ ...+. + .+... +.. ++.++++||
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~-lS~-G~~~r-v-~lara----l~~--~p~illlDE 96 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ-LSG-GEKMR-L-ALAKL----LLE--NPNLLLLDE 96 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc-CCH-HHHHH-H-HHHHH----Hhc--CCCEEEEeC
Confidence 348999999999999999998876322211111 111111 111 11111 1 11111 111 678999999
Q ss_pred C-CCCCHHHHHHHHHHHHHhcCCceEEEEecCCcc
Q 021660 150 A-DAMTKDAQFALRRVIEKYTKNTRFALICNQVNK 183 (309)
Q Consensus 150 ~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 183 (309)
. ..+.......+.+++.+. ...+++++++...
T Consensus 97 P~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~ 129 (144)
T cd03221 97 PTNHLDLESIEALEEALKEY--PGTVILVSHDRYF 129 (144)
T ss_pred CccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHH
Confidence 5 467778888888888876 3456666665543
No 316
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.04 E-value=0.00011 Score=57.63 Aligned_cols=100 Identities=16% Similarity=0.189 Sum_probs=57.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccCcccccE----EEEecCCC-cchHHHHHHHHHhhhccccccCCCCccEEEEEeC
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMI----LELNASDD-RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDE 149 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe 149 (309)
..+.|.||.|+|||||++.++.........+.+ +.+..... .+... ++. -.+... +.. ++.++++||
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq-~qr-v~lara----l~~--~p~lllLDE 97 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGE-LQR-VAIAAA----LLR--NATFYLFDE 97 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHH-HHH-HHHHHH----Hhc--CCCEEEEEC
Confidence 448999999999999999998876432211111 11111110 11111 111 111111 111 678999999
Q ss_pred CC-CCCHHHHHHHHHHHHHhcC-C-ceEEEEecCCc
Q 021660 150 AD-AMTKDAQFALRRVIEKYTK-N-TRFALICNQVN 182 (309)
Q Consensus 150 ~~-~l~~~~~~~l~~~l~~~~~-~-~~~i~~~~~~~ 182 (309)
.. .+.......+.+++.+... . ..+|+++++..
T Consensus 98 Pts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~ 133 (177)
T cd03222 98 PSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA 133 (177)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH
Confidence 64 5667777888888876532 2 45667776554
No 317
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.04 E-value=5.6e-05 Score=59.11 Aligned_cols=30 Identities=33% Similarity=0.594 Sum_probs=26.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccCccc
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYH 104 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~ 104 (309)
+.++|+|+||+||||+++.+++.+....+.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~ 31 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWR 31 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhh
Confidence 568999999999999999999999766543
No 318
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.02 E-value=9.1e-05 Score=57.88 Aligned_cols=44 Identities=18% Similarity=0.379 Sum_probs=33.3
Q ss_pred ccEEEEEeCC-CCCCHHHHHHHHHHHHHhcCCceEEEEecCCccc
Q 021660 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKI 184 (309)
Q Consensus 141 ~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l 184 (309)
++.++++||. ..+.......+.+++.+......+|+++++...+
T Consensus 114 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 158 (171)
T cd03228 114 DPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTI 158 (171)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH
Confidence 6889999995 4677778888899988775556677777766544
No 319
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.02 E-value=0.00017 Score=70.09 Aligned_cols=181 Identities=12% Similarity=0.066 Sum_probs=102.7
Q ss_pred ccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHc-cCc-c-cccEEEEecCCCcchHHHHHHHHHhhhcc
Q 021660 56 AAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY-GAQ-Y-HNMILELNASDDRGIDVVRQQIQDFASTQ 132 (309)
Q Consensus 56 ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (309)
+|++..++.+.+.+-......+-++|-.|+||||+++.+.+... ..+ + ...++.++. ......+...+..-....
T Consensus 161 VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk--~f~~~~iq~~Il~~l~~~ 238 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSK--EFTTRKIQQTILERLGLL 238 (889)
T ss_pred ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcc--cccHHhHHHHHHHHhccC
Confidence 99999999999998887777799999999999999999998875 222 1 122222222 222222222222111000
Q ss_pred cc----------------ccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHh----cCCceEEEEecCCcccchhhhcce
Q 021660 133 SF----------------SFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY----TKNTRFALICNQVNKIIPALQSRC 192 (309)
Q Consensus 133 ~~----------------~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~----~~~~~~i~~~~~~~~l~~~l~~r~ 192 (309)
.. .+. ..+-+|++||+-. +.. ++.+.-+ ...+.+++||+...--.... ...
T Consensus 239 ~~~~~~~~~~~~~~~i~~~L~--~krfllvLDDIW~--~~d----w~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m-~~~ 309 (889)
T KOG4658|consen 239 DEEWEDKEEDELASKLLNLLE--GKRFLLVLDDIWE--EVD----WDKIGVPFPSRENGSKVVLTTRSEEVCGRAM-GVD 309 (889)
T ss_pred CcccchhhHHHHHHHHHHHhc--cCceEEEEecccc--ccc----HHhcCCCCCCccCCeEEEEEeccHhhhhccc-cCC
Confidence 00 011 2677999999843 111 3333322 12367888876543222111 123
Q ss_pred eEEEecCCChHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 021660 193 TRFRFAPLEPVHVTERLKHVIEAEGLD---VTEGGLAALVRLCNGDMRKALNILQSTH 247 (309)
Q Consensus 193 ~~i~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~l~~i~~~~~g~~r~~~~~l~~~~ 247 (309)
..++..-+++++.=..+.+.+-..... .-++....+++.|+|.|-.+.-+-..++
T Consensus 310 ~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma 367 (889)
T KOG4658|consen 310 YPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLA 367 (889)
T ss_pred ccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhc
Confidence 445566677776666666655322111 1367778888999997765554444443
No 320
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.02 E-value=9.5e-05 Score=58.93 Aligned_cols=102 Identities=20% Similarity=0.289 Sum_probs=56.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhccccccC----------------CCC
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFG----------------VKA 140 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~ 140 (309)
++|.||+|+||||++-.+|..+...+..+.++..+.......+.++...+. ......... ...
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~-l~vp~~~~~~~~~~~~~~~~~l~~~~~~ 82 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEI-LGVPFYVARTESDPAEIAREALEKFRKK 82 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHH-HTEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHH-hccccchhhcchhhHHHHHHHHHHHhhc
Confidence 899999999999999999999876666666666655543333332222221 111100000 001
Q ss_pred ccEEEEEeCCCCCCH--HHHHHHHHHHHHhcCC-ceEEEEec
Q 021660 141 SVKLVLLDEADAMTK--DAQFALRRVIEKYTKN-TRFALICN 179 (309)
Q Consensus 141 ~~~lliiDe~~~l~~--~~~~~l~~~l~~~~~~-~~~i~~~~ 179 (309)
+..+|+||=..+... +....+.++++...+. ..+++.++
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~ 124 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSAT 124 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGG
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecc
Confidence 346899998766553 3355666666665433 34444443
No 321
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.02 E-value=8.2e-05 Score=59.92 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=39.9
Q ss_pred CccEEEEEeC-CCCCCHHHHHHHHHHHHHhc---CCceEEEEecCCcccchhhhcce
Q 021660 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYT---KNTRFALICNQVNKIIPALQSRC 192 (309)
Q Consensus 140 ~~~~lliiDe-~~~l~~~~~~~l~~~l~~~~---~~~~~i~~~~~~~~l~~~l~~r~ 192 (309)
.+|.++|+|| ++.+.....+.|++.+++.. ..+.+|++|...+.+++-+-.+.
T Consensus 188 ~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~l 244 (257)
T COG1119 188 KDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRL 244 (257)
T ss_pred cCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEE
Confidence 4788999999 56777777788888888653 35678889988888777654443
No 322
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.00 E-value=0.00013 Score=56.52 Aligned_cols=56 Identities=14% Similarity=0.296 Sum_probs=42.0
Q ss_pred ccEEEEEeCC-CCCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEE
Q 021660 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFR 196 (309)
Q Consensus 141 ~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~l~~r~~~i~ 196 (309)
++.+++-||- .++.++....+++++++.+....-|++++....+...+..|+..++
T Consensus 155 ~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~ 211 (223)
T COG2884 155 QPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALE 211 (223)
T ss_pred CCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEe
Confidence 7889999995 5788888899999999988666555555555566667777765544
No 323
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.00 E-value=1e-05 Score=68.33 Aligned_cols=96 Identities=20% Similarity=0.252 Sum_probs=54.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccCc-ccccEEEEecCCCcchHHHHHHHHHhhhcccc------ccCCCCccEEEEEe
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSF------SFGVKASVKLVLLD 148 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~lliiD 148 (309)
.+++||+-|.|||.|.......+..+. ...++..+.. .+.+.+........+ .+. .+.+||++|
T Consensus 67 GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~-------~vH~~l~~l~g~~dpl~~iA~~~~--~~~~vLCfD 137 (367)
T COG1485 67 GLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMA-------RVHQRLHTLQGQTDPLPPIADELA--AETRVLCFD 137 (367)
T ss_pred eEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHH-------HHHHHHHHHcCCCCccHHHHHHHH--hcCCEEEee
Confidence 399999999999999999999985433 2222221111 111111111100000 011 167899999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCceEEE-EecC
Q 021660 149 EADAMTKDAQFALRRVIEKYTKNTRFAL-ICNQ 180 (309)
Q Consensus 149 e~~~l~~~~~~~l~~~l~~~~~~~~~i~-~~~~ 180 (309)
|++.-.....-.|-.+++..-.+.++++ |+|.
T Consensus 138 EF~VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~ 170 (367)
T COG1485 138 EFEVTDIADAMILGRLLEALFARGVVLVATSNT 170 (367)
T ss_pred eeeecChHHHHHHHHHHHHHHHCCcEEEEeCCC
Confidence 9987665555566677776554555544 4553
No 324
>PRK14974 cell division protein FtsY; Provisional
Probab=97.99 E-value=0.0001 Score=63.58 Aligned_cols=32 Identities=34% Similarity=0.452 Sum_probs=25.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccCcccccE
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMI 107 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~ 107 (309)
.++|+|++|+||||++..++..+...+..+.+
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~l 173 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVI 173 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 39999999999999999999888655544333
No 325
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.99 E-value=4.4e-05 Score=60.54 Aligned_cols=34 Identities=32% Similarity=0.361 Sum_probs=25.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCcccccEEEE
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 110 (309)
++++||||+|||+++..++......+....++.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 6899999999999999988876555544444433
No 326
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.99 E-value=1.6e-05 Score=69.64 Aligned_cols=89 Identities=25% Similarity=0.287 Sum_probs=52.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH--ccCcccccEEEEecCCCcchHHHHHHHHHh----------------hhccccccC
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL--YGAQYHNMILELNASDDRGIDVVRQQIQDF----------------ASTQSFSFG 137 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~ 137 (309)
.+++.|.||||||.++..+++.+ ...+....+...+.... ..+...+... .......-.
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~---~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 79 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLR---NKLREQLAKKYNPKLKKSDFRKPTSFINNYSESDK 79 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHH---HHHHHHHhhhcccchhhhhhhhhHHHHhhcccccc
Confidence 38999999999999999999998 44444444444433321 1122122111 111000001
Q ss_pred CCCccEEEEEeCCCCCCHH--------HHHHHHHHHHH
Q 021660 138 VKASVKLVLLDEADAMTKD--------AQFALRRVIEK 167 (309)
Q Consensus 138 ~~~~~~lliiDe~~~l~~~--------~~~~l~~~l~~ 167 (309)
......+||+||+|++... ..+.|..+++.
T Consensus 80 ~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 80 EKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred cCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 1235789999999999872 23667777775
No 327
>PRK08118 topology modulation protein; Reviewed
Probab=97.97 E-value=8e-05 Score=57.84 Aligned_cols=24 Identities=29% Similarity=0.564 Sum_probs=22.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
..+++.||+|+||||+++.+++.+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999998
No 328
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.97 E-value=0.0001 Score=61.64 Aligned_cols=33 Identities=36% Similarity=0.540 Sum_probs=26.8
Q ss_pred HHhcCCCCeEEEECCCCCcHHHHHHHHHHHHcc
Q 021660 68 LTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100 (309)
Q Consensus 68 ~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (309)
+...+...+++|.||+|+||||+++.++..+..
T Consensus 105 l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 105 LVRNNRVLNTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred HHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCC
Confidence 334444567999999999999999999998743
No 329
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.96 E-value=6.3e-05 Score=66.06 Aligned_cols=139 Identities=17% Similarity=0.221 Sum_probs=72.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHcc----CcccccEEEEecCCCcchHHHHHHHHHhhhcccccc-------------CC
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYG----AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSF-------------GV 138 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~ 138 (309)
.++|+||+|+||||++..+|..+.. .+..+.++..++-....... +..........+ ..
T Consensus 176 vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ----L~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 176 VFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ----IQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH----HHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 4999999999999999999988742 24455555555432211111 222221111000 11
Q ss_pred CCccEEEEEeCCCCCCHH--HHHHHHHHHHHhcC--CceEEEEecCCcccchhhhcce-----eEEEecCCChHHHHHHH
Q 021660 139 KASVKLVLLDEADAMTKD--AQFALRRVIEKYTK--NTRFALICNQVNKIIPALQSRC-----TRFRFAPLEPVHVTERL 209 (309)
Q Consensus 139 ~~~~~lliiDe~~~l~~~--~~~~l~~~l~~~~~--~~~~i~~~~~~~~l~~~l~~r~-----~~i~~~~~~~~~~~~~l 209 (309)
..+..+|+||.+.+...+ ....+..+++.... ...+++.++....-...+..++ .-+.|..++....-..+
T Consensus 252 ~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~TKlDet~~~G~~ 331 (388)
T PRK12723 252 SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLDETTCVGNL 331 (388)
T ss_pred hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEeccCCCcchHH
Confidence 135789999999887643 23556666664432 3444444433322222332332 34556666654443334
Q ss_pred HHHHHHcCC
Q 021660 210 KHVIEAEGL 218 (309)
Q Consensus 210 ~~~~~~~~~ 218 (309)
-..+...+.
T Consensus 332 l~~~~~~~~ 340 (388)
T PRK12723 332 ISLIYEMRK 340 (388)
T ss_pred HHHHHHHCC
Confidence 344433343
No 330
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.96 E-value=0.00013 Score=56.04 Aligned_cols=98 Identities=17% Similarity=0.249 Sum_probs=57.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCC-----------------cchHHHHHHHHHhhhccccccC
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD-----------------RGIDVVRQQIQDFASTQSFSFG 137 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~ 137 (309)
..+.|.|+.|+||||+++.++..+...... +.++.... .+....+ . -.+... +.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~---i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~-r-~~l~~~----l~ 96 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGE---ILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQ-R-VALARA----LL 96 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccE---EEECCEEcccCCHHHHHhceEEEeeCCHHHHH-H-HHHHHH----Hh
Confidence 448999999999999999998876322111 11211100 0011110 0 111111 11
Q ss_pred CCCccEEEEEeCCC-CCCHHHHHHHHHHHHHhcCC-ceEEEEecCCcc
Q 021660 138 VKASVKLVLLDEAD-AMTKDAQFALRRVIEKYTKN-TRFALICNQVNK 183 (309)
Q Consensus 138 ~~~~~~lliiDe~~-~l~~~~~~~l~~~l~~~~~~-~~~i~~~~~~~~ 183 (309)
.++.++++||.. .+.......+.+++...... ..++++++....
T Consensus 97 --~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~ 142 (157)
T cd00267 97 --LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPEL 142 (157)
T ss_pred --cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 157899999965 56677788888888865433 456666665543
No 331
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.95 E-value=0.00012 Score=63.52 Aligned_cols=140 Identities=16% Similarity=0.237 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhcC----CCCeEEEECCCCCcHHHHHHHHHHHHc--cCcccccEEEEecCCCcchHHHHHHHHHhhhccc
Q 021660 60 DIVDTIDRLTSEN----RLPHLLLYGPPGTGKTSTILAVARKLY--GAQYHNMILELNASDDRGIDVVRQQIQDFASTQS 133 (309)
Q Consensus 60 ~~~~~l~~~~~~~----~~~~~ll~G~~G~GKT~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (309)
+....+..++... +...+.|.||.|+||||.+..+|.... .....+.++..++-.....+. +..+..-..
T Consensus 185 ~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQ----Lk~Ya~im~ 260 (407)
T COG1419 185 EKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQ----LKTYADIMG 260 (407)
T ss_pred HHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHH----HHHHHHHhC
Confidence 3444444444333 234599999999999999988888875 444555555555443221111 222221111
Q ss_pred cc-------------cCCCCccEEEEEeCCCCCC--HHHHHHHHHHHHHh-cCCceEEEEecCCcccchhhhcce-----
Q 021660 134 FS-------------FGVKASVKLVLLDEADAMT--KDAQFALRRVIEKY-TKNTRFALICNQVNKIIPALQSRC----- 192 (309)
Q Consensus 134 ~~-------------~~~~~~~~lliiDe~~~l~--~~~~~~l~~~l~~~-~~~~~~i~~~~~~~~l~~~l~~r~----- 192 (309)
.. ........+|++|=+.+-. ......|..+++.. +-...+++.++....-...+..+|
T Consensus 261 vp~~vv~~~~el~~ai~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i 340 (407)
T COG1419 261 VPLEVVYSPKELAEAIEALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPI 340 (407)
T ss_pred CceEEecCHHHHHHHHHHhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCCc
Confidence 10 0012246788888765533 23345555555543 334455555555444444444443
Q ss_pred eEEEecCCChH
Q 021660 193 TRFRFAPLEPV 203 (309)
Q Consensus 193 ~~i~~~~~~~~ 203 (309)
.-+.|..++..
T Consensus 341 ~~~I~TKlDET 351 (407)
T COG1419 341 DGLIFTKLDET 351 (407)
T ss_pred ceeEEEccccc
Confidence 23445555543
No 332
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.94 E-value=8.6e-05 Score=57.32 Aligned_cols=107 Identities=13% Similarity=0.116 Sum_probs=65.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCC-CcchHHHH-------------------------HHHHHh
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD-DRGIDVVR-------------------------QQIQDF 128 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------------------------~~~~~~ 128 (309)
+-+.+++++|.||||+|..++-+..+.+..+.++++--.. ..+..... ......
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~ 85 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKAA 85 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHHH
Confidence 3488999999999999999999988777777666554332 11110000 001000
Q ss_pred hhccccccCCCCccEEEEEeCCCCCCHH---HHHHHHHHHHHhcCCceEEEEecCCc
Q 021660 129 ASTQSFSFGVKASVKLVLLDEADAMTKD---AQFALRRVIEKYTKNTRFALICNQVN 182 (309)
Q Consensus 129 ~~~~~~~~~~~~~~~lliiDe~~~l~~~---~~~~l~~~l~~~~~~~~~i~~~~~~~ 182 (309)
.......+ ......+||+||+.....- ..+.+.++++..|++..+|+|++..+
T Consensus 86 ~~~a~~~l-~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 86 WQHAKEML-ADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHH-hcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 00000000 0125789999998532211 13568889998898999999998654
No 333
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.94 E-value=7.3e-05 Score=65.75 Aligned_cols=43 Identities=28% Similarity=0.407 Sum_probs=35.1
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHcc
Q 021660 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100 (309)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (309)
|..+++.+.+.+....+.++++.|+.|||||++++++...+..
T Consensus 6 Q~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 6 QRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 5566777777776666667999999999999999999998844
No 334
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.93 E-value=0.00017 Score=68.92 Aligned_cols=102 Identities=21% Similarity=0.236 Sum_probs=58.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHH-------HHHHhhhcccccc-----CCCCcc
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQ-------QIQDFASTQSFSF-----GVKASV 142 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-----~~~~~~ 142 (309)
+.++|+|+||||||++++.+...+...+....+. +..........+.+ .+..+........ ......
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~-l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~ 417 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVG-LAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDC 417 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEE-EEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccC
Confidence 3599999999999999999988875443112222 22222222222211 1112221111000 001246
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecC
Q 021660 143 KLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (309)
Q Consensus 143 ~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~ 180 (309)
.+|||||+..+.......|+. ..+....+|++++.
T Consensus 418 ~llIvDEaSMvd~~~~~~Ll~---~~~~~~rlilvGD~ 452 (720)
T TIGR01448 418 DLLIVDESSMMDTWLALSLLA---ALPDHARLLLVGDT 452 (720)
T ss_pred CEEEEeccccCCHHHHHHHHH---hCCCCCEEEEECcc
Confidence 799999999998766555554 44567888888743
No 335
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.92 E-value=1.6e-05 Score=72.05 Aligned_cols=49 Identities=18% Similarity=0.280 Sum_probs=40.9
Q ss_pred CccccccChHHHHHHHHHHh----c--CCCCeEEEECCCCCcHHHHHHHHHHHHc
Q 021660 51 SLADVAAHRDIVDTIDRLTS----E--NRLPHLLLYGPPGTGKTSTILAVARKLY 99 (309)
Q Consensus 51 ~~~~~ig~~~~~~~l~~~~~----~--~~~~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (309)
.|++++|.++++..+...+. + .+.+.++|.||||+|||+|++.+++.+.
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 47899999999998888772 2 2334599999999999999999999874
No 336
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.92 E-value=6.1e-05 Score=58.99 Aligned_cols=107 Identities=13% Similarity=0.095 Sum_probs=66.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCC-CcchHHHHHH--------------------------HHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD-DRGIDVVRQQ--------------------------IQD 127 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------------------------~~~ 127 (309)
..+.++|++|.||||+|..++-+..+.+..+.++.+--.. ..+.....+. ...
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~ 102 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAARE 102 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHHH
Confidence 4599999999999999999999987777666666654432 1111111110 000
Q ss_pred hhhccccccCCCCccEEEEEeCCCCCCHH---HHHHHHHHHHHhcCCceEEEEecCCc
Q 021660 128 FASTQSFSFGVKASVKLVLLDEADAMTKD---AQFALRRVIEKYTKNTRFALICNQVN 182 (309)
Q Consensus 128 ~~~~~~~~~~~~~~~~lliiDe~~~l~~~---~~~~l~~~l~~~~~~~~~i~~~~~~~ 182 (309)
........+ ......+||+||+-....- ..+.+.++|+..|....+|+|++..+
T Consensus 103 ~~~~a~~~l-~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 103 GWEEAKRML-ADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHH-hCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 000000000 1125789999998543321 14678889998888999999997654
No 337
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=97.92 E-value=0.0019 Score=57.01 Aligned_cols=57 Identities=14% Similarity=0.235 Sum_probs=41.6
Q ss_pred cccChHHHHHHHHHHh---cCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEe
Q 021660 55 VAAHRDIVDTIDRLTS---ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELN 111 (309)
Q Consensus 55 ~ig~~~~~~~l~~~~~---~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 111 (309)
-||++..+..+.+.+. .+....-++.|.-|+|||++++.+.......++-...+.++
T Consensus 27 ~VGr~~e~~~l~~~l~~v~~G~s~~kfi~G~YGsGKTf~l~~i~~~A~~~~fvvs~v~ls 86 (416)
T PF10923_consen 27 AVGREREIEALDRDLDRVADGGSSFKFIRGEYGSGKTFFLRLIRERALEKGFVVSEVDLS 86 (416)
T ss_pred eechHHHHHHHHHHHHHHhCCCCeEEEEEeCCCCcHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 3788888887776654 55444589999999999999999988876655544444333
No 338
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.90 E-value=0.00014 Score=67.55 Aligned_cols=103 Identities=19% Similarity=0.313 Sum_probs=57.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccCccc--ccEEEEecCCCcchHHHHHHHHH------------------------h
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYH--NMILELNASDDRGIDVVRQQIQD------------------------F 128 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------------------------~ 128 (309)
+..+|+|+|||||||++..+...+...... ..-+.+..........+.+.+.. +
T Consensus 161 ~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~~~~~~~~~~~a~TiHrl 240 (586)
T TIGR01447 161 NFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAAEALIAALPSEAVTIHRL 240 (586)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccchhhhhccccccchhhhh
Confidence 459999999999999999988876432211 11233333332222323222221 1
Q ss_pred hhccc----ccc--CCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecC
Q 021660 129 ASTQS----FSF--GVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (309)
Q Consensus 129 ~~~~~----~~~--~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~ 180 (309)
..... +.+ .......+|||||+-.+.......|+ +..++..++|++++.
T Consensus 241 Lg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~~l~~~ll---~al~~~~rlIlvGD~ 295 (586)
T TIGR01447 241 LGIKPDTKRFRHHERNPLPLDVLVVDEASMVDLPLMAKLL---KALPPNTKLILLGDK 295 (586)
T ss_pred hcccCCcchhhhcccCCCcccEEEEcccccCCHHHHHHHH---HhcCCCCEEEEECCh
Confidence 11100 000 00113469999999988866555554 445668889988853
No 339
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.90 E-value=0.00031 Score=62.82 Aligned_cols=36 Identities=28% Similarity=0.457 Sum_probs=27.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHc--cCcccccEEEEe
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLY--GAQYHNMILELN 111 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~--~~~~~~~~~~~~ 111 (309)
.++|.||+|+||||++..++..+. ..+..+.++..+
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D 260 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLD 260 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 489999999999999999988874 334445554443
No 340
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.89 E-value=0.0002 Score=56.67 Aligned_cols=41 Identities=12% Similarity=0.302 Sum_probs=30.4
Q ss_pred ccEEEEEeCCCC-CCHHHHHHHHHHHHHhcCCc-eEEEEecCC
Q 021660 141 SVKLVLLDEADA-MTKDAQFALRRVIEKYTKNT-RFALICNQV 181 (309)
Q Consensus 141 ~~~lliiDe~~~-l~~~~~~~l~~~l~~~~~~~-~~i~~~~~~ 181 (309)
+|.++++||... |.++.....+.+|....... ..|++|.+.
T Consensus 154 ~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM 196 (240)
T COG1126 154 DPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEM 196 (240)
T ss_pred CCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechh
Confidence 788999999864 56888889999998876554 445555544
No 341
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.88 E-value=0.00014 Score=67.82 Aligned_cols=103 Identities=17% Similarity=0.241 Sum_probs=58.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccCc-ccccEEEEecCCCcchHHHHHHHH------------------------Hhh
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQ------------------------DFA 129 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~ 129 (309)
+..+|+|+|||||||++..+...+.... .....+.+..........+.+.+. .+.
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrlL 247 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRLL 247 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHHh
Confidence 3499999999999999999888763321 111233344443333333332222 111
Q ss_pred hccccc----cC--CCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecC
Q 021660 130 STQSFS----FG--VKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (309)
Q Consensus 130 ~~~~~~----~~--~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~ 180 (309)
...+.. +. ......+|||||+-.+.-.....|+. ..++++++|++++.
T Consensus 248 g~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~---al~~~~rlIlvGD~ 301 (615)
T PRK10875 248 GAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLID---ALPPHARVIFLGDR 301 (615)
T ss_pred CcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHH---hcccCCEEEEecch
Confidence 111100 00 00123699999998887555555544 45678899999854
No 342
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.88 E-value=0.00021 Score=56.23 Aligned_cols=44 Identities=23% Similarity=0.281 Sum_probs=33.5
Q ss_pred ccEEEEEeCC-CCCCHHHHHHHHHHHHHhcCCceEEEEecCCccc
Q 021660 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKI 184 (309)
Q Consensus 141 ~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l 184 (309)
++.++++||. ..+.......+.+++.+......+|+++++...+
T Consensus 116 ~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 160 (178)
T cd03247 116 DAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGI 160 (178)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 7889999995 4677777888888888765556677777766544
No 343
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.88 E-value=4.5e-05 Score=63.03 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=24.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHccC
Q 021660 73 RLPHLLLYGPPGTGKTSTILAVARKLYGA 101 (309)
Q Consensus 73 ~~~~~ll~G~~G~GKT~l~~~l~~~~~~~ 101 (309)
+...++|.||+|+|||++++.+++.+...
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~ 43 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN 43 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc
Confidence 34559999999999999999999988554
No 344
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.88 E-value=0.00025 Score=55.52 Aligned_cols=43 Identities=16% Similarity=0.311 Sum_probs=31.8
Q ss_pred ccEEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CceEEEEecCCcc
Q 021660 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTK-NTRFALICNQVNK 183 (309)
Q Consensus 141 ~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~-~~~~i~~~~~~~~ 183 (309)
++.++++||. ..+.......+.+++..... ...+|+++++...
T Consensus 114 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~ 158 (173)
T cd03246 114 NPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPET 158 (173)
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 6889999995 46777778888888887643 4567777776543
No 345
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.88 E-value=0.00017 Score=57.48 Aligned_cols=99 Identities=24% Similarity=0.324 Sum_probs=65.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHH
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~ 156 (309)
++|.|+.|+|||++.+.+........ +.... ..+. ...+. +.-++-+||++.+...
T Consensus 55 lvl~G~QG~GKStf~~~L~~~~~~d~-------~~~~~--~kd~-~~~l~--------------~~~iveldEl~~~~k~ 110 (198)
T PF05272_consen 55 LVLVGKQGIGKSTFFRKLGPEYFSDS-------INDFD--DKDF-LEQLQ--------------GKWIVELDELDGLSKK 110 (198)
T ss_pred eeEecCCcccHHHHHHHHhHHhccCc-------cccCC--CcHH-HHHHH--------------HhHheeHHHHhhcchh
Confidence 89999999999999999966631111 11111 1111 11111 3468999999999888
Q ss_pred HHHHHHHHHHHh---------------cCCceEEEEecCCcccc-hhhhcceeEEEecC
Q 021660 157 AQFALRRVIEKY---------------TKNTRFALICNQVNKII-PALQSRCTRFRFAP 199 (309)
Q Consensus 157 ~~~~l~~~l~~~---------------~~~~~~i~~~~~~~~l~-~~l~~r~~~i~~~~ 199 (309)
..+.|..++... +..+.+|.+||....+. ++=.+|+..+.+..
T Consensus 111 ~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf~~v~v~~ 169 (198)
T PF05272_consen 111 DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRFWPVEVSK 169 (198)
T ss_pred hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEEEEEEEcC
Confidence 888888887742 23456788888876543 34567887777766
No 346
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.87 E-value=0.00017 Score=69.12 Aligned_cols=115 Identities=13% Similarity=0.227 Sum_probs=64.1
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHH-------HHHHhhh
Q 021660 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQ-------QIQDFAS 130 (309)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 130 (309)
.+.-...+...+.+. ..++|.|+||||||+++..+...+...+..+ .-+.++ ......+.+ .+..+..
T Consensus 354 s~~Q~~Av~~i~~s~--~~~il~G~aGTGKTtll~~i~~~~~~~g~~V--~~~ApT-g~Aa~~L~~~~g~~a~Ti~~~~~ 428 (744)
T TIGR02768 354 SEEQYEAVRHVTGSG--DIAVVVGRAGTGKSTMLKAAREAWEAAGYRV--IGAALS-GKAAEGLQAESGIESRTLASLEY 428 (744)
T ss_pred CHHHHHHHHHHhcCC--CEEEEEecCCCCHHHHHHHHHHHHHhCCCeE--EEEeCc-HHHHHHHHhccCCceeeHHHHHh
Confidence 344445555555443 3589999999999999999988875544332 222222 111111111 0111110
Q ss_pred ccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021660 131 TQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (309)
Q Consensus 131 ~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~ 179 (309)
.............+|||||+..++......|+..... ..+.+|+++.
T Consensus 429 ~~~~~~~~~~~~~llIvDEasMv~~~~~~~Ll~~~~~--~~~kliLVGD 475 (744)
T TIGR02768 429 AWANGRDLLSDKDVLVIDEAGMVGSRQMARVLKEAEE--AGAKVVLVGD 475 (744)
T ss_pred hhccCcccCCCCcEEEEECcccCCHHHHHHHHHHHHh--cCCEEEEECC
Confidence 0000001112578999999999987776666654432 3667777774
No 347
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.87 E-value=0.00013 Score=57.53 Aligned_cols=108 Identities=14% Similarity=0.234 Sum_probs=59.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHH-------HHH-----hhhccccccC-----
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQ-------IQD-----FASTQSFSFG----- 137 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-----~~~~~~~~~~----- 137 (309)
..+.|.||+|+||||+++.++.........+.+...+... .....+... +.. ........++
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~q 104 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQ 104 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHH
Confidence 4499999999999999999988763322111111111111 001111111 110 0011111111
Q ss_pred -------CCCccEEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CceEEEEecCCcc
Q 021660 138 -------VKASVKLVLLDEA-DAMTKDAQFALRRVIEKYTK--NTRFALICNQVNK 183 (309)
Q Consensus 138 -------~~~~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~--~~~~i~~~~~~~~ 183 (309)
-..++.++++||. ..+.......+.+++..... ...+|+++++...
T Consensus 105 rl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~ 160 (180)
T cd03214 105 RVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL 160 (180)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 1137889999995 46777888888888887643 4566777766543
No 348
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.87 E-value=1.6e-05 Score=58.20 Aligned_cols=22 Identities=36% Similarity=0.853 Sum_probs=21.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
++|.|+||+||||+++.+++.+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999997
No 349
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.86 E-value=0.00012 Score=55.50 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=21.9
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
..+.|+||+|||||++.+.+|...
T Consensus 30 e~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhcc
Confidence 349999999999999999999887
No 350
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.85 E-value=3.4e-05 Score=58.29 Aligned_cols=22 Identities=41% Similarity=0.918 Sum_probs=20.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
++++||||+||||+++.+++.+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 7899999999999999999886
No 351
>PRK14532 adenylate kinase; Provisional
Probab=97.83 E-value=0.00073 Score=53.61 Aligned_cols=23 Identities=30% Similarity=0.696 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
+++|.||||+||||+++.+++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999986
No 352
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.83 E-value=8.1e-05 Score=61.96 Aligned_cols=27 Identities=33% Similarity=0.543 Sum_probs=23.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCcc
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQY 103 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~ 103 (309)
++|+|+||+||||+++.+++.+...+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~ 28 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNI 28 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 789999999999999999999854433
No 353
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.83 E-value=8.6e-05 Score=62.12 Aligned_cols=97 Identities=18% Similarity=0.265 Sum_probs=50.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEe-----cCC---CcchHHHHHHHHHhhhccccccCCCCccEEEE
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELN-----ASD---DRGIDVVRQQIQDFASTQSFSFGVKASVKLVL 146 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lli 146 (309)
|.++|+|.||+|||++++.+...+...+..+.++.-. ... .......+..+........ + ...+||
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~l---s---~~~iVI 75 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERAL---S---KDTIVI 75 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHH---T---T-SEEE
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhh---c---cCeEEE
Confidence 5689999999999999999999987655444333311 111 1112233333333332211 1 357999
Q ss_pred EeCCCCCCHHHHHHHHHHHHHhcCCceEEEEe
Q 021660 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALIC 178 (309)
Q Consensus 147 iDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~ 178 (309)
+|+..++ +.....|+.+-.......++|.+.
T Consensus 76 ~Dd~nYi-Kg~RYelyclAr~~~~~~c~i~~~ 106 (270)
T PF08433_consen 76 LDDNNYI-KGMRYELYCLARAYGTTFCVIYCD 106 (270)
T ss_dssp E-S---S-HHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred EeCCchH-HHHHHHHHHHHHHcCCCEEEEEEC
Confidence 9998876 456677777666655444444443
No 354
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.82 E-value=0.00038 Score=62.23 Aligned_cols=37 Identities=24% Similarity=0.358 Sum_probs=29.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEec
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 112 (309)
.++|+|++|+||||++..++..+...+..+.++..++
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~ 133 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADT 133 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 4899999999999999999999876665555554444
No 355
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.82 E-value=0.00034 Score=58.60 Aligned_cols=50 Identities=22% Similarity=0.399 Sum_probs=37.2
Q ss_pred CCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHcc
Q 021660 50 QSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100 (309)
Q Consensus 50 ~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (309)
..++++--.+...+.+..++... ...++|.||+|+||||+++.+...+..
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~~-~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEKP-HGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhcC-CCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 34555555666677777776544 245999999999999999999888743
No 356
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=97.81 E-value=0.00024 Score=55.88 Aligned_cols=43 Identities=26% Similarity=0.337 Sum_probs=35.3
Q ss_pred cChHHHHHHHHHHhcC-CCCeEEEECCCCCcHHHHHHHHHHHHc
Q 021660 57 AHRDIVDTIDRLTSEN-RLPHLLLYGPPGTGKTSTILAVARKLY 99 (309)
Q Consensus 57 g~~~~~~~l~~~~~~~-~~~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (309)
.|.+++..+.+.+... ..++++|.+|+|+|||.++..++.++.
T Consensus 7 ~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~ 50 (184)
T PF04851_consen 7 YQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA 50 (184)
T ss_dssp HHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc
Confidence 3677788888887776 556799999999999999998777773
No 357
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.80 E-value=0.00012 Score=54.64 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=21.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHcc
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYG 100 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (309)
+++++||+|+|||+.+..++..+..
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~ 26 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLD 26 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHh
Confidence 4899999999999999888888754
No 358
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.80 E-value=0.00022 Score=62.13 Aligned_cols=37 Identities=27% Similarity=0.458 Sum_probs=29.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEe
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELN 111 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 111 (309)
..++|.||+|+||||++..++..+...+..+.++..+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aD 278 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD 278 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Confidence 3489999999999999999999986655555554443
No 359
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.80 E-value=0.00035 Score=55.96 Aligned_cols=25 Identities=32% Similarity=0.590 Sum_probs=22.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHcc
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYG 100 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (309)
.++|.||+|+||||++..++..+..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4899999999999999999988853
No 360
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.80 E-value=0.00017 Score=59.08 Aligned_cols=30 Identities=23% Similarity=0.267 Sum_probs=22.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccCcccc
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHN 105 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~ 105 (309)
.+++.|++|+|||+++..++......+...
T Consensus 26 ~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~ 55 (230)
T PRK08533 26 LILIEGDESTGKSILSQRLAYGFLQNGYSV 55 (230)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCcE
Confidence 399999999999999876666553344333
No 361
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.78 E-value=0.00016 Score=58.39 Aligned_cols=32 Identities=28% Similarity=0.506 Sum_probs=25.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCcccccEE
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMIL 108 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~ 108 (309)
+.|+||||+|||+++..++......+....|+
T Consensus 15 ~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi 46 (209)
T TIGR02237 15 TQIYGPPGSGKTNICMILAVNAARQGKKVVYI 46 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 99999999999999999988775444333333
No 362
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.78 E-value=0.00039 Score=58.47 Aligned_cols=22 Identities=32% Similarity=0.732 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
+++.||+|+|||+++..+++.+
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~ 23 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKL 23 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999999987
No 363
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.78 E-value=0.00031 Score=57.84 Aligned_cols=44 Identities=18% Similarity=0.188 Sum_probs=28.6
Q ss_pred HHHHHhcCCC--CeEEEECCCCCcHHHHHHHHHHHHccCcccccEE
Q 021660 65 IDRLTSENRL--PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMIL 108 (309)
Q Consensus 65 l~~~~~~~~~--~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~ 108 (309)
|...+.++-+ ..++++|+||+|||+++.+++......+....++
T Consensus 14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~ 59 (234)
T PRK06067 14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVI 59 (234)
T ss_pred HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEE
Confidence 3444444422 2399999999999999999977653333333333
No 364
>PF13245 AAA_19: Part of AAA domain
Probab=97.78 E-value=0.00013 Score=48.46 Aligned_cols=25 Identities=48% Similarity=0.834 Sum_probs=18.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHc
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLY 99 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (309)
+.+++.||||+|||+++...+..+.
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4477799999999966666666653
No 365
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.77 E-value=0.00065 Score=54.28 Aligned_cols=36 Identities=31% Similarity=0.426 Sum_probs=28.5
Q ss_pred HHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHcc
Q 021660 65 IDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100 (309)
Q Consensus 65 l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (309)
+...+......+.++.||||+||||+++-+++.+..
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~ 163 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSD 163 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhc
Confidence 344445555567999999999999999999998843
No 366
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.76 E-value=0.00027 Score=57.87 Aligned_cols=46 Identities=26% Similarity=0.395 Sum_probs=31.2
Q ss_pred HHHHHhcCCCC--eEEEECCCCCcHHHHHHHHHHHHccCcccccEEEE
Q 021660 65 IDRLTSENRLP--HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (309)
Q Consensus 65 l~~~~~~~~~~--~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 110 (309)
|...+.++-+. .++|+|+||+|||+++..++......+....|+..
T Consensus 12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~ 59 (225)
T PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDT 59 (225)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 34444444222 28999999999999999999877555444444433
No 367
>PRK07261 topology modulation protein; Provisional
Probab=97.76 E-value=0.00019 Score=56.03 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.|++|+||||+++.++..+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 38999999999999999998886
No 368
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.74 E-value=8.2e-05 Score=64.63 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=24.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHccC
Q 021660 73 RLPHLLLYGPPGTGKTSTILAVARKLYGA 101 (309)
Q Consensus 73 ~~~~~ll~G~~G~GKT~l~~~l~~~~~~~ 101 (309)
+....+|.||+|+|||++++.+++.+...
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~n 196 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTN 196 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhh
Confidence 33459999999999999999999988654
No 369
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.74 E-value=7.9e-05 Score=60.15 Aligned_cols=22 Identities=55% Similarity=0.801 Sum_probs=19.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVAR 96 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~ 96 (309)
..++|||+||+|||++++.++.
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcCC
Confidence 3499999999999999998863
No 370
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.73 E-value=0.00042 Score=59.07 Aligned_cols=23 Identities=30% Similarity=0.700 Sum_probs=21.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.||+|+|||+++..+++.+
T Consensus 6 ~i~i~GptgsGKt~la~~la~~~ 28 (307)
T PRK00091 6 VIVIVGPTASGKTALAIELAKRL 28 (307)
T ss_pred EEEEECCCCcCHHHHHHHHHHhC
Confidence 48999999999999999999997
No 371
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.73 E-value=0.00073 Score=60.30 Aligned_cols=115 Identities=15% Similarity=0.202 Sum_probs=71.5
Q ss_pred CCCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEE--------------EEecCC
Q 021660 49 PQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMIL--------------ELNASD 114 (309)
Q Consensus 49 p~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~--------------~~~~~~ 114 (309)
..+++.+.........+.+++.... +-+|++||.|+||||+...+.+.++....++..+ .++...
T Consensus 234 ~l~l~~Lg~~~~~~~~~~~~~~~p~-GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~Q~qVN~k~ 312 (500)
T COG2804 234 ILDLEKLGMSPFQLARLLRLLNRPQ-GLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGINQVQVNPKI 312 (500)
T ss_pred cCCHHHhCCCHHHHHHHHHHHhCCC-eEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeecCCcceeeccccc
Confidence 4456777777888888888887753 3399999999999999999999997665432211 111111
Q ss_pred CcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCc
Q 021660 115 DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVN 182 (309)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 182 (309)
... +...++.+... .|.+|+|.|+-- .++.....+.-. .+.++++|=...
T Consensus 313 glt---fa~~LRa~LRq---------DPDvImVGEIRD--~ETAeiavqAal----TGHLVlSTlHtn 362 (500)
T COG2804 313 GLT---FARALRAILRQ---------DPDVIMVGEIRD--LETAEIAVQAAL----TGHLVLSTLHTN 362 (500)
T ss_pred CCC---HHHHHHHHhcc---------CCCeEEEeccCC--HHHHHHHHHHHh----cCCeEeeecccC
Confidence 111 22233333322 789999999964 233333333322 566788774433
No 372
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.73 E-value=3.6e-05 Score=56.86 Aligned_cols=33 Identities=33% Similarity=0.536 Sum_probs=27.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEE
Q 021660 73 RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (309)
Q Consensus 73 ~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 110 (309)
..|+++++|-||+||||++..++... +..++.+
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~-----~~~~i~i 38 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKT-----GLEYIEI 38 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHh-----CCceEeh
Confidence 35789999999999999999999876 5555543
No 373
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.72 E-value=0.00036 Score=61.23 Aligned_cols=39 Identities=33% Similarity=0.582 Sum_probs=28.5
Q ss_pred HHHHHHhcCCCC--eEEEECCCCCcHHHHHHHHHHHHccCc
Q 021660 64 TIDRLTSENRLP--HLLLYGPPGTGKTSTILAVARKLYGAQ 102 (309)
Q Consensus 64 ~l~~~~~~~~~~--~~ll~G~~G~GKT~l~~~l~~~~~~~~ 102 (309)
.+.+.+.++-.+ .++|+|+||+|||+++..++..+...+
T Consensus 70 eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g 110 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG 110 (372)
T ss_pred HHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 445555544333 289999999999999999998875443
No 374
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=97.71 E-value=0.00099 Score=55.33 Aligned_cols=186 Identities=18% Similarity=0.205 Sum_probs=101.7
Q ss_pred CccccccChHHHHHHHHHHh-cCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHH--
Q 021660 51 SLADVAAHRDIVDTIDRLTS-ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQD-- 127 (309)
Q Consensus 51 ~~~~~ig~~~~~~~l~~~~~-~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 127 (309)
...++++-+...+.+..... ........++|.+|.|||+.++.+++.. ....+.+.+..... ...+......
T Consensus 70 ~~~~~l~tkt~r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~----p~~~l~~~~p~~~a-~~~i~~i~~~~~ 144 (297)
T COG2842 70 LAPDFLETKTVRRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPSN----PNALLIEADPSYTA-LVLILIICAAAF 144 (297)
T ss_pred ccccccccchhHhHhhhhhhhhhcCceEEEeccccchhHHHHHhhcccC----ccceeecCChhhHH-HHHHHHHHHHHh
Confidence 56678887665443332221 1122348999999999999999998874 23333333332210 0000000000
Q ss_pred ---------hhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCC--------cccchhhhc
Q 021660 128 ---------FASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQV--------NKIIPALQS 190 (309)
Q Consensus 128 ---------~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~--------~~l~~~l~~ 190 (309)
......... +...+++++||++.++....+.|....+... .-++++.++. ......+.+
T Consensus 145 ~~~~~~~~d~~~~~~~~l--~~~~~~iivDEA~~L~~~ale~lr~i~d~~G--i~~vLvG~prL~~~l~~~~~~~~rl~s 220 (297)
T COG2842 145 GATDGTINDLTERLMIRL--RDTVRLIIVDEADRLPYRALEELRRIHDKTG--IGVVLVGMPRLFKVLRRPEDELSRLYS 220 (297)
T ss_pred cccchhHHHHHHHHHHHH--ccCcceeeeehhhccChHHHHHHHHHHHhhC--ceEEEecChHHHhccccchHHHHHHHH
Confidence 000000001 2267899999999999999999888888664 3344444322 111223344
Q ss_pred ceeE---EEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 021660 191 RCTR---FRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA 249 (309)
Q Consensus 191 r~~~---i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~ 249 (309)
|..+ +...-++..+...+....+. ....+.+..+.....|++|.+-..+..+...
T Consensus 221 rv~v~~~~~~~~~d~d~~~~~~~~~l~----~~~~~~v~~~~~~~~g~~~~L~~~l~~~~~~ 278 (297)
T COG2842 221 RVRVGKLLGEKFPDADELAEIAALVLP----TEDELVLMQVIKETEGNIRRLDKILAGAVGT 278 (297)
T ss_pred HhhhHhhhhhhhhhhHHHHHHHHhhCc----cchHHHHHHHHHhcchhHhHHHHHHhhhhhh
Confidence 4311 11122333444444433221 2567778888888899999988888665543
No 375
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.71 E-value=0.00039 Score=55.51 Aligned_cols=52 Identities=13% Similarity=0.225 Sum_probs=34.7
Q ss_pred ccEEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CceEEEEecCCcccchhhhcce
Q 021660 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTK-NTRFALICNQVNKIIPALQSRC 192 (309)
Q Consensus 141 ~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~-~~~~i~~~~~~~~l~~~l~~r~ 192 (309)
++.++++||. ..+.......+.+++.+... ...+|+++.+.......+..+.
T Consensus 129 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v 182 (194)
T cd03213 129 NPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKL 182 (194)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEE
Confidence 6889999995 45677778888888887643 4566777776543233333443
No 376
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.69 E-value=0.0003 Score=59.28 Aligned_cols=52 Identities=25% Similarity=0.390 Sum_probs=37.6
Q ss_pred CCccccccChHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHHccC
Q 021660 50 QSLADVAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGA 101 (309)
Q Consensus 50 ~~~~~~ig~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~ 101 (309)
.+++++.-.....+.+.+++... ...+++|+|++|+||||++.+++..+...
T Consensus 101 ~sle~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 101 FSLEDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp -CHCCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred ccHhhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhcccc
Confidence 36777776665555555555443 22559999999999999999999988554
No 377
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.69 E-value=0.00032 Score=56.14 Aligned_cols=24 Identities=17% Similarity=0.355 Sum_probs=20.9
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
..++|+||.|+||||+++.++...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 348999999999999999998654
No 378
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.69 E-value=0.00038 Score=56.40 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=19.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVAR 96 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~ 96 (309)
..++|+||.|+|||++++.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 4499999999999999999984
No 379
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.68 E-value=0.00053 Score=54.36 Aligned_cols=38 Identities=29% Similarity=0.435 Sum_probs=23.9
Q ss_pred cEEEEEeCCCCCCH-HHHHHHHHHHHHhcCCceEEEEec
Q 021660 142 VKLVLLDEADAMTK-DAQFALRRVIEKYTKNTRFALICN 179 (309)
Q Consensus 142 ~~lliiDe~~~l~~-~~~~~l~~~l~~~~~~~~~i~~~~ 179 (309)
..++||||+|.+.. .....+..++...+....+++.+.
T Consensus 130 ~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~sa 168 (201)
T smart00487 130 VDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSA 168 (201)
T ss_pred CCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEec
Confidence 34899999999886 445555555555544444444443
No 380
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.68 E-value=0.00034 Score=58.52 Aligned_cols=35 Identities=14% Similarity=0.157 Sum_probs=27.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCcccccEEEEe
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELN 111 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 111 (309)
++++|+||+|||+++..++......+....|+.+.
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 89999999999999999887754455556666554
No 381
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.67 E-value=0.00038 Score=62.74 Aligned_cols=44 Identities=32% Similarity=0.521 Sum_probs=30.4
Q ss_pred HHHHHHhcCCCCe--EEEECCCCCcHHHHHHHHHHHHccCcccccE
Q 021660 64 TIDRLTSENRLPH--LLLYGPPGTGKTSTILAVARKLYGAQYHNMI 107 (309)
Q Consensus 64 ~l~~~~~~~~~~~--~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~ 107 (309)
.+.+.+.++-.+. ++|+|+||+|||+++..++......+....|
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlY 113 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLY 113 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 4555555543322 8999999999999999999887533333333
No 382
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.67 E-value=0.00068 Score=53.05 Aligned_cols=42 Identities=14% Similarity=0.332 Sum_probs=30.8
Q ss_pred ccEEEEEeCC-CCCCHHHHHHHHHHHHHhcCC-ceEEEEecCCc
Q 021660 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTKN-TRFALICNQVN 182 (309)
Q Consensus 141 ~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~~-~~~i~~~~~~~ 182 (309)
++.++++||. ..+.......+.+++...... ..+|+++++..
T Consensus 113 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~ 156 (173)
T cd03230 113 DPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE 156 (173)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
Confidence 7889999995 456677788888888876433 55666666554
No 383
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.67 E-value=0.00046 Score=56.00 Aligned_cols=23 Identities=43% Similarity=0.814 Sum_probs=20.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.||+||||||+.+.+-+.+
T Consensus 29 f~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 38999999999999999886655
No 384
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.66 E-value=0.00024 Score=69.38 Aligned_cols=115 Identities=14% Similarity=0.150 Sum_probs=63.1
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHH-------HHHHHHhhh
Q 021660 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVV-------RQQIQDFAS 130 (309)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 130 (309)
.++-...+..++.+. ..++|.|++||||||++..+...+...++.+ +-+..+. .....+ ...+..+..
T Consensus 348 s~eQr~Av~~il~s~--~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V--~~~ApTG-kAA~~L~e~tGi~a~TI~sll~ 422 (988)
T PRK13889 348 SGEQADALAHVTDGR--DLGVVVGYAGTGKSAMLGVAREAWEAAGYEV--RGAALSG-IAAENLEGGSGIASRTIASLEH 422 (988)
T ss_pred CHHHHHHHHHHhcCC--CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeE--EEecCcH-HHHHHHhhccCcchhhHHHHHh
Confidence 334444555555433 2488999999999999998877765444332 2222211 111111 111222211
Q ss_pred ccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021660 131 TQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (309)
Q Consensus 131 ~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~ 179 (309)
.............+|||||+..+.......|+..... ..+.+|+++.
T Consensus 423 ~~~~~~~~l~~~~vlIVDEASMv~~~~m~~LL~~a~~--~garvVLVGD 469 (988)
T PRK13889 423 GWGQGRDLLTSRDVLVIDEAGMVGTRQLERVLSHAAD--AGAKVVLVGD 469 (988)
T ss_pred hhcccccccccCcEEEEECcccCCHHHHHHHHHhhhh--CCCEEEEECC
Confidence 1000000111467999999999988777766665543 3677888874
No 385
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.65 E-value=0.00047 Score=53.91 Aligned_cols=34 Identities=29% Similarity=0.355 Sum_probs=26.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCcccccEEEE
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 110 (309)
++++|+||+|||+++..++..+...+..+.++..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~ 36 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAA 36 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 6899999999999999999988655444444433
No 386
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.65 E-value=0.00097 Score=52.18 Aligned_cols=42 Identities=21% Similarity=0.259 Sum_probs=30.6
Q ss_pred cEEEEEeCC-CCCCHHHHHHHHHHHHHhc-CCceEEEEecCCcc
Q 021660 142 VKLVLLDEA-DAMTKDAQFALRRVIEKYT-KNTRFALICNQVNK 183 (309)
Q Consensus 142 ~~lliiDe~-~~l~~~~~~~l~~~l~~~~-~~~~~i~~~~~~~~ 183 (309)
+.++++||. ..+.......+.+.+.+.. ....+|+++.+...
T Consensus 108 p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~ 151 (176)
T cd03238 108 GTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDV 151 (176)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 899999995 4567777888888887654 34567777776543
No 387
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.64 E-value=0.00071 Score=53.39 Aligned_cols=22 Identities=23% Similarity=0.610 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
++++|+||+||||+++.+++.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6899999999999999999987
No 388
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.63 E-value=0.00014 Score=58.89 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHc
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLY 99 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~ 99 (309)
.+-|.||+|||||||.+.++....
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 489999999999999999998764
No 389
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.63 E-value=0.0014 Score=50.88 Aligned_cols=103 Identities=22% Similarity=0.231 Sum_probs=58.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccCccccc------EEEEecCCCcchHHHHHHHHHhhhccccccC-----------
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNM------ILELNASDDRGIDVVRQQIQDFASTQSFSFG----------- 137 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 137 (309)
..+.|.||.|+|||||++.++..+....-.+. +..+..........+.+.+... ....++
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~lar 104 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAFAR 104 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHHHHH
Confidence 34999999999999999999987643211111 1111111100011222222110 000011
Q ss_pred -CCCccEEEEEeCCC-CCCHHHHHHHHHHHHHhcCCceEEEEecCCc
Q 021660 138 -VKASVKLVLLDEAD-AMTKDAQFALRRVIEKYTKNTRFALICNQVN 182 (309)
Q Consensus 138 -~~~~~~lliiDe~~-~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 182 (309)
-..++.++++||.. .+.......+.+++.+. ...+|+++++..
T Consensus 105 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~ 149 (166)
T cd03223 105 LLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPS 149 (166)
T ss_pred HHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChh
Confidence 11378899999964 56777788888888876 355677776653
No 390
>PRK14528 adenylate kinase; Provisional
Probab=97.62 E-value=0.0015 Score=51.69 Aligned_cols=24 Identities=29% Similarity=0.735 Sum_probs=22.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++++.||||+||||+++.+++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999886
No 391
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=97.62 E-value=0.0001 Score=60.64 Aligned_cols=21 Identities=29% Similarity=0.659 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~ 97 (309)
+++.|+||+|||++++.++..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKD 21 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHh
Confidence 478999999999999999988
No 392
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.62 E-value=0.0039 Score=53.95 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHcc
Q 021660 61 IVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100 (309)
Q Consensus 61 ~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (309)
....+..++... .+++++|++|+||||++++++..+..
T Consensus 149 ~~~~L~~~v~~~--~nili~G~tgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 149 IKEFLEHAVISK--KNIIISGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred HHHHHHHHHHcC--CcEEEECCCCCCHHHHHHHHHhhCCC
Confidence 344555555554 56999999999999999999998843
No 393
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=0.0061 Score=52.92 Aligned_cols=102 Identities=12% Similarity=0.037 Sum_probs=61.6
Q ss_pred cEEEEEeCCCCCCH--------------H---HHHHHHHHHHHhcCCceEEEEec--CCc---------------ccch-
Q 021660 142 VKLVLLDEADAMTK--------------D---AQFALRRVIEKYTKNTRFALICN--QVN---------------KIIP- 186 (309)
Q Consensus 142 ~~lliiDe~~~l~~--------------~---~~~~l~~~l~~~~~~~~~i~~~~--~~~---------------~l~~- 186 (309)
+.++.||++..+.. . ..+.+..++..-.....+|++.+ ... .+.+
T Consensus 316 kVLvaID~~n~l~~~T~~k~~~~~~v~P~dl~li~~~~~~i~ndwt~g~vi~a~s~~~~~~a~~h~gv~~y~pr~llg~e 395 (461)
T KOG3928|consen 316 KVLVAIDNFNSLFTVTAYKSEDNKPVTPLDLTLIHLLRDIISNDWTFGSVIMAISGVTTPSAFGHLGVAPYVPRKLLGEE 395 (461)
T ss_pred cEEEEEcCcchheeeeeeeccccCcCCchhhhHHHHHHHHHhcccccceEEEEecccccchhccccccccCCchHhcCcc
Confidence 55899999987753 1 13445555655444445555544 111 0111
Q ss_pred --hhhcceeEEEecCCChHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhcCCHHHHHHHH
Q 021660 187 --ALQSRCTRFRFAPLEPVHVTERLKHVIEAEGL---DVTEGGLAALVRLCNGDMRKALNIL 243 (309)
Q Consensus 187 --~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~l~~i~~~~~g~~r~~~~~l 243 (309)
..+..|..+++++++.+|...++.-++.+.=+ -.+++....+.=.++|||+....++
T Consensus 396 gfe~lqpf~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLSngNP~l~~~lc 457 (461)
T KOG3928|consen 396 GFEALQPFVPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLSNGNPSLMERLC 457 (461)
T ss_pred chhhccCcCccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhcCCCHHHHHHHH
Confidence 22345677899999999999888776654311 1236667777778899995544443
No 394
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.61 E-value=0.0008 Score=59.32 Aligned_cols=35 Identities=26% Similarity=0.441 Sum_probs=25.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHH-ccCcccccEEEEe
Q 021660 77 LLLYGPPGTGKTSTILAVARKL-YGAQYHNMILELN 111 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~-~~~~~~~~~~~~~ 111 (309)
++|.||+|+||||++..++... ...+..+.++..+
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~D 261 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTD 261 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEeccc
Confidence 8899999999999999999865 2334444444433
No 395
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.61 E-value=0.00054 Score=53.29 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+++.|+||+|||+++..++...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 48999999999999999999886
No 396
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.61 E-value=0.0012 Score=57.69 Aligned_cols=26 Identities=27% Similarity=0.543 Sum_probs=23.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHcc
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYG 100 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (309)
..++|+||+|+||||+++.+...+..
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~ 148 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINK 148 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 56999999999999999999988753
No 397
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.60 E-value=0.00013 Score=59.77 Aligned_cols=37 Identities=38% Similarity=0.595 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHH
Q 021660 60 DIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.-...+..++.... ..+++||||||||+++..++..+
T Consensus 5 ~Q~~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 5 SQREAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHh
Confidence 33445555555432 38999999999999888888887
No 398
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.60 E-value=0.00027 Score=56.93 Aligned_cols=51 Identities=20% Similarity=0.335 Sum_probs=34.6
Q ss_pred ccEEEEEeCCC-CCCHHHHHHHHHHHHHhcC--CceEEEEecCCcccchhhhcce
Q 021660 141 SVKLVLLDEAD-AMTKDAQFALRRVIEKYTK--NTRFALICNQVNKIIPALQSRC 192 (309)
Q Consensus 141 ~~~lliiDe~~-~l~~~~~~~l~~~l~~~~~--~~~~i~~~~~~~~l~~~l~~r~ 192 (309)
++++||+||.- .|....+..+++++.+... +..+|+++.+... ...+-+|+
T Consensus 159 ~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~-v~~~cdRi 212 (252)
T COG1124 159 EPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLAL-VEHMCDRI 212 (252)
T ss_pred CCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHH-HHHHhhhe
Confidence 78899999964 4455668888888886543 4467788876543 34455554
No 399
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.60 E-value=0.00028 Score=55.70 Aligned_cols=42 Identities=19% Similarity=0.397 Sum_probs=30.5
Q ss_pred ccEEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CceEEEEecCCc
Q 021660 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (309)
Q Consensus 141 ~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~-~~~~i~~~~~~~ 182 (309)
++.++++||. ..+.......+.+++..... ...+|+++++..
T Consensus 122 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 165 (182)
T cd03215 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD 165 (182)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 7889999995 56677778888888887643 456666666543
No 400
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.60 E-value=0.00018 Score=62.34 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=27.2
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHccCcccc
Q 021660 72 NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHN 105 (309)
Q Consensus 72 ~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~ 105 (309)
++....+|+||+|+|||++++.+++.+..+....
T Consensus 131 GkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv 164 (380)
T PRK12608 131 GKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEV 164 (380)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCc
Confidence 4455699999999999999999999886543333
No 401
>PRK06762 hypothetical protein; Provisional
Probab=97.59 E-value=0.0026 Score=49.31 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|+|+||+||||+++.+++.+
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999987
No 402
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=97.57 E-value=0.0012 Score=60.14 Aligned_cols=52 Identities=25% Similarity=0.461 Sum_probs=39.5
Q ss_pred CCCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccC
Q 021660 49 PQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101 (309)
Q Consensus 49 p~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~ 101 (309)
+..++++--.++.++.+..++.... +.++++||+|+||||++..+.+.+...
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~~~~-GlilitGptGSGKTTtL~a~L~~l~~~ 269 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIRRPH-GIILVTGPTGSGKTTTLYAALSRLNTP 269 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhcCC-CEEEEEcCCCCCHHHHHHHHHhccCCC
Confidence 4456666557777778887776543 348999999999999999988887543
No 403
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.57 E-value=0.00065 Score=62.36 Aligned_cols=41 Identities=20% Similarity=0.287 Sum_probs=32.0
Q ss_pred ccEEEEEeCCC-CCCHHHHHHHHHHHHHhcCCceEEEEecCC
Q 021660 141 SVKLVLLDEAD-AMTKDAQFALRRVIEKYTKNTRFALICNQV 181 (309)
Q Consensus 141 ~~~lliiDe~~-~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~ 181 (309)
+|++++|||+- .+.++....+++.+++.-+.+.+|-++...
T Consensus 533 kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~ 574 (604)
T COG4178 533 KPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRP 574 (604)
T ss_pred CCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccch
Confidence 78999999985 456777889999999865677777776543
No 404
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.56 E-value=0.00072 Score=57.66 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=36.2
Q ss_pred CCCcccccc----ChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHc
Q 021660 49 PQSLADVAA----HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99 (309)
Q Consensus 49 p~~~~~~ig----~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (309)
+.++++++. .+.....|..++... .+++++|++|+||||++++++..+.
T Consensus 105 ~~tl~~l~~~g~~~~~~~~~L~~~v~~~--~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 105 VFTLDDYVEAGIMTAAQRDVLREAVLAR--KNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred CCCHHHHHhcCCCCHHHHHHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHHhh
Confidence 335566652 344556677777654 5699999999999999999998874
No 405
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.56 E-value=0.00085 Score=55.37 Aligned_cols=47 Identities=21% Similarity=0.220 Sum_probs=30.9
Q ss_pred HHHHHhcCCCC--eEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEe
Q 021660 65 IDRLTSENRLP--HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELN 111 (309)
Q Consensus 65 l~~~~~~~~~~--~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 111 (309)
|.+.+.++-++ .++++||||+|||+++..++......+....++.+.
T Consensus 10 LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 10 MDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred HHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 44445544332 399999999999999998877643444444454443
No 406
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.56 E-value=0.0039 Score=47.08 Aligned_cols=22 Identities=36% Similarity=0.712 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
++|.|++|+||||+++.++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999997
No 407
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.56 E-value=0.00032 Score=61.31 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=24.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHccC
Q 021660 73 RLPHLLLYGPPGTGKTSTILAVARKLYGA 101 (309)
Q Consensus 73 ~~~~~ll~G~~G~GKT~l~~~l~~~~~~~ 101 (309)
+...++|.||+|+|||++++.+++.+...
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhccc
Confidence 33459999999999999999999987544
No 408
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.56 E-value=0.00097 Score=58.24 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=21.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
..++|.||+|+||||++..++..+
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 349999999999999999999875
No 409
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.55 E-value=0.0012 Score=51.94 Aligned_cols=43 Identities=16% Similarity=0.348 Sum_probs=31.6
Q ss_pred ccEEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CceEEEEecCCcc
Q 021660 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTK--NTRFALICNQVNK 183 (309)
Q Consensus 141 ~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~--~~~~i~~~~~~~~ 183 (309)
++.++++||. ..+.......+.+++.+... ...+|+++++...
T Consensus 118 ~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~ 163 (178)
T cd03229 118 DPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDE 163 (178)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 6889999995 56677888888888887654 3566777765543
No 410
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.53 E-value=0.00088 Score=68.45 Aligned_cols=150 Identities=23% Similarity=0.378 Sum_probs=94.1
Q ss_pred cccChHHHH---HHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhc
Q 021660 55 VAAHRDIVD---TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAST 131 (309)
Q Consensus 55 ~ig~~~~~~---~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (309)
+|-.+.+.+ .+..+...++.| ++|.||.|+|||.++..++++. +-.+++++....... .+.+.+....
T Consensus 419 ~i~T~~vq~~la~~~~a~~~~~~p-illqG~tssGKtsii~~la~~~-----g~~~vrinnhehtd~---qeyig~y~~~ 489 (1856)
T KOG1808|consen 419 YIITPRVQKNLADLARAISSGKFP-ILLQGPTSSGKTSIIKELARAT-----GKNIVRINNHEHTDL---QEYIGTYVAD 489 (1856)
T ss_pred eeccHHHHHHHHHHHHHHhcCCCC-eEEecCcCcCchhHHHHHHHHh-----ccCceehhccccchH---HHHHHhhhcC
Confidence 455444444 444444455444 9999999999999999999998 555666655443322 2223311111
Q ss_pred ccc--cc------CCCCccEEEEEeCCCCCCHHHHHHHHHHHHHh-----cCCce-------EE-EEe-cCC------cc
Q 021660 132 QSF--SF------GVKASVKLVLLDEADAMTKDAQFALRRVIEKY-----TKNTR-------FA-LIC-NQV------NK 183 (309)
Q Consensus 132 ~~~--~~------~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~-----~~~~~-------~i-~~~-~~~------~~ 183 (309)
... .+ ....++..+++|+++....+..+.|.+++++. +...+ +. +.+ |.. ..
T Consensus 490 ~~g~l~freg~LV~Alr~G~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~grk~ 569 (1856)
T KOG1808|consen 490 DNGDLVFREGVLVQALRNGDWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGRKI 569 (1856)
T ss_pred CCCCeeeehhHHHHHHHhCCEEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchhhh
Confidence 000 00 11225778999999999999999999999862 21222 11 122 222 23
Q ss_pred cchhhhcceeEEEecCCChHHHHHHHHHHH
Q 021660 184 IIPALQSRCTRFRFAPLEPVHVTERLKHVI 213 (309)
Q Consensus 184 l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~ 213 (309)
+..++.+|+..++|...+.+++..++.+++
T Consensus 570 lsRa~~~rf~e~~f~~~~e~e~~~i~~~~~ 599 (1856)
T KOG1808|consen 570 LSRALRNRFIELHFDDIGEEELEEILEHRC 599 (1856)
T ss_pred hhhcccccchhhhhhhcCchhhhhhhcccc
Confidence 446777888889999999988888887754
No 411
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.53 E-value=0.0013 Score=53.60 Aligned_cols=44 Identities=30% Similarity=0.444 Sum_probs=30.7
Q ss_pred HHHHHhcCCCCe--EEEECCCCCcHHHHHHHHHHHHccCcccccEE
Q 021660 65 IDRLTSENRLPH--LLLYGPPGTGKTSTILAVARKLYGAQYHNMIL 108 (309)
Q Consensus 65 l~~~~~~~~~~~--~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~ 108 (309)
|...+.++-++. ++++|+||+|||+++..++......+....++
T Consensus 8 LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi 53 (218)
T cd01394 8 LDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYI 53 (218)
T ss_pred HHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 444444443222 89999999999999999998875554444444
No 412
>PRK06547 hypothetical protein; Provisional
Probab=97.52 E-value=0.00021 Score=55.75 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=26.9
Q ss_pred HHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHH
Q 021660 65 IDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 65 l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
+...+.......++|.|++|+||||+++.+++.+
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3344455555558999999999999999999986
No 413
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.52 E-value=0.0029 Score=57.41 Aligned_cols=26 Identities=38% Similarity=0.639 Sum_probs=22.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHcc
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYG 100 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (309)
..+.|+||+|+||||++..++..+..
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~ 376 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAA 376 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34899999999999999999887643
No 414
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.51 E-value=0.02 Score=52.26 Aligned_cols=119 Identities=18% Similarity=0.266 Sum_probs=85.0
Q ss_pred ccEEEEEeCCCCCCH--HHHHHHHHHHHHhcCCc-eEEEEecCCcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcC
Q 021660 141 SVKLVLLDEADAMTK--DAQFALRRVIEKYTKNT-RFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEG 217 (309)
Q Consensus 141 ~~~lliiDe~~~l~~--~~~~~l~~~l~~~~~~~-~~i~~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~ 217 (309)
++.++++.|+|.+.. .....|.++........ .+|+++ ....++..|.+-+.+++++-|+.+|+..+++..+...+
T Consensus 81 ~~~~~vl~d~h~~~~~~~~~r~l~~l~~~~~~~~~~~i~~~-~~~~~p~el~~~~~~~~~~lP~~~ei~~~l~~~~~~~~ 159 (489)
T CHL00195 81 TPALFLLKDFNRFLNDISISRKLRNLSRILKTQPKTIIIIA-SELNIPKELKDLITVLEFPLPTESEIKKELTRLIKSLN 159 (489)
T ss_pred CCcEEEEecchhhhcchHHHHHHHHHHHHHHhCCCEEEEEc-CCCCCCHHHHhceeEEeecCcCHHHHHHHHHHHHHhcC
Confidence 367999999998843 33444555444333233 344444 45567888888889999999999999999999888888
Q ss_pred CCCCHHHHHHHHHHhcCC-HHHHHHHHHHHHhhcCCcCHHHHHh
Q 021660 218 LDVTEGGLAALVRLCNGD-MRKALNILQSTHMASQQITEEAVYL 260 (309)
Q Consensus 218 ~~~~~~~l~~i~~~~~g~-~r~~~~~l~~~~~~~~~i~~~~v~~ 260 (309)
..++++.++.+++.+.|- ...+.+.+.......+.++.+++..
T Consensus 160 ~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (489)
T CHL00195 160 IKIDSELLENLTRACQGLSLERIRRVLSKIIATYKTIDENSIPL 203 (489)
T ss_pred CCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCCChhhHHH
Confidence 899999999999998875 5555566665544446677765543
No 415
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.50 E-value=0.0026 Score=50.48 Aligned_cols=144 Identities=18% Similarity=0.182 Sum_probs=67.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCC---
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADA--- 152 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~--- 152 (309)
.++|+||+|+|||.++-.+|++. +..++..+...-.. .+. +.. .......+.. -++ +++||-..
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~-----g~pvI~~Driq~y~--~l~--v~S-grp~~~el~~--~~R-iyL~~r~l~~G 69 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKT-----GAPVISLDRIQCYP--ELS--VGS-GRPTPSELKG--TRR-IYLDDRPLSDG 69 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH-------EEEEE-SGGG-G--GGT--TTT-T---SGGGTT---EE-EES----GGG-
T ss_pred EEEEECCCCCChhHHHHHHHHHh-----CCCEEEecceeccc--ccc--ccc-CCCCHHHHcc--cce-eeeccccccCC
Confidence 47999999999999999999998 55555554332100 000 000 0000000111 244 77876322
Q ss_pred -CC-HHHHHHHHHHHHHhcCCceEEEEecCCcccchhhh-----cce--eEEEecCCChHHHHHHHHHHHHHcC--CCCC
Q 021660 153 -MT-KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQ-----SRC--TRFRFAPLEPVHVTERLKHVIEAEG--LDVT 221 (309)
Q Consensus 153 -l~-~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~l~-----~r~--~~i~~~~~~~~~~~~~l~~~~~~~~--~~~~ 221 (309)
++ .+..+.|...+.+.....-+|+-+....-+..-.. ..+ .+..++-++.+......+++.++-- -.-.
T Consensus 70 ~i~a~ea~~~Li~~v~~~~~~~~~IlEGGSISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ML~p~~~~ 149 (233)
T PF01745_consen 70 IINAEEAHERLISEVNSYSAHGGLILEGGSISLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQMLRPDSSG 149 (233)
T ss_dssp S--HHHHHHHHHHHHHTTTTSSEEEEEE--HHHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHHHS--SSS
T ss_pred CcCHHHHHHHHHHHHHhccccCceEEeCchHHHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHHhcCCCCCC
Confidence 22 34466788888887777777776654433222111 122 3444555555555555555554421 1234
Q ss_pred HHHHHHHHHHh
Q 021660 222 EGGLAALVRLC 232 (309)
Q Consensus 222 ~~~l~~i~~~~ 232 (309)
+..++++++..
T Consensus 150 ~Sll~EL~~lW 160 (233)
T PF01745_consen 150 PSLLEELVALW 160 (233)
T ss_dssp --HHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 57777787776
No 416
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.49 E-value=0.001 Score=53.67 Aligned_cols=41 Identities=12% Similarity=0.294 Sum_probs=30.7
Q ss_pred ccEEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CceEEEEecCC
Q 021660 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTK--NTRFALICNQV 181 (309)
Q Consensus 141 ~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~--~~~~i~~~~~~ 181 (309)
+|.+|+-||- ..+..+....++.++.+... ...+|++|.+.
T Consensus 160 ~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~ 203 (226)
T COG1136 160 NPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP 203 (226)
T ss_pred CCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 7889999995 56777778888888887743 45677777644
No 417
>PLN02840 tRNA dimethylallyltransferase
Probab=97.49 E-value=0.0033 Score=55.59 Aligned_cols=24 Identities=33% Similarity=0.697 Sum_probs=22.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHc
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLY 99 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~ 99 (309)
.++|.||+|+|||+++..+++.+.
T Consensus 23 vi~I~GptgsGKTtla~~La~~~~ 46 (421)
T PLN02840 23 VIVISGPTGAGKSRLALELAKRLN 46 (421)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
Confidence 499999999999999999999983
No 418
>PRK14531 adenylate kinase; Provisional
Probab=97.49 E-value=0.0018 Score=51.21 Aligned_cols=23 Identities=35% Similarity=0.676 Sum_probs=21.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++++||||+||||+++.+++.+
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999997
No 419
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.48 E-value=0.0016 Score=55.88 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+++.|+||+||||+++.+++.+
T Consensus 4 liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHC
Confidence 38899999999999999999986
No 420
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.48 E-value=0.00012 Score=58.40 Aligned_cols=60 Identities=13% Similarity=0.156 Sum_probs=34.0
Q ss_pred ccEEEEEeCCCCCCHHHH------HHHHHHHHHhc-CCceEEEEecCCcccchhhhcce-eEEEecCC
Q 021660 141 SVKLVLLDEADAMTKDAQ------FALRRVIEKYT-KNTRFALICNQVNKIIPALQSRC-TRFRFAPL 200 (309)
Q Consensus 141 ~~~lliiDe~~~l~~~~~------~~l~~~l~~~~-~~~~~i~~~~~~~~l~~~l~~r~-~~i~~~~~ 200 (309)
...++||||++...+... ....+.+...- ...-++++|-.+..+++.++..+ ..+++..+
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~~id~~ir~lve~~~~~~k~ 146 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPSQIDKFIRDLVEYHYHCRKL 146 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GGGB-HHHHCCEEEEEEEEE-
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHHHHhHHHHHHHheEEEEEee
Confidence 468999999998764322 22334444332 34568888888888888887765 44544433
No 421
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.48 E-value=0.00054 Score=54.14 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=31.5
Q ss_pred CccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHH
Q 021660 51 SLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 51 ~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~ 97 (309)
++.-+.|..++++.+.--+..+ ...-|.||+||||||+++.+-+-
T Consensus 12 ~l~~yYg~~~aL~~i~l~i~~~--~VTAlIGPSGcGKST~LR~lNRm 56 (253)
T COG1117 12 DLNLYYGDKHALKDINLDIPKN--KVTALIGPSGCGKSTLLRCLNRM 56 (253)
T ss_pred ceeEEECchhhhccCceeccCC--ceEEEECCCCcCHHHHHHHHHhh
Confidence 4455667666666655444444 33789999999999999988544
No 422
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.48 E-value=0.0024 Score=56.00 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=23.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHcc
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYG 100 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (309)
..++++||+|+||||++++++..+..
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~ 175 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGE 175 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45999999999999999999988743
No 423
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.48 E-value=0.0013 Score=52.46 Aligned_cols=42 Identities=17% Similarity=0.340 Sum_probs=30.8
Q ss_pred ccEEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CceEEEEecCCc
Q 021660 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (309)
Q Consensus 141 ~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~-~~~~i~~~~~~~ 182 (309)
++.++++||. ..+.......+.+++.+... ...+|+++++..
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 7889999995 45667778888888887543 456777777654
No 424
>PRK04328 hypothetical protein; Provisional
Probab=97.47 E-value=0.0012 Score=54.86 Aligned_cols=46 Identities=22% Similarity=0.196 Sum_probs=30.1
Q ss_pred HHHHHhcCCC--CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEE
Q 021660 65 IDRLTSENRL--PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (309)
Q Consensus 65 l~~~~~~~~~--~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 110 (309)
|.+.+.++-+ ..++++|+||+|||+++..++......+....++.+
T Consensus 12 LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 12 MDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred HHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 3444444422 239999999999999999887765444444444443
No 425
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.47 E-value=0.0017 Score=58.70 Aligned_cols=42 Identities=33% Similarity=0.553 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCCCe--EEEECCCCCcHHHHHHHHHHHHccCcc
Q 021660 62 VDTIDRLTSENRLPH--LLLYGPPGTGKTSTILAVARKLYGAQY 103 (309)
Q Consensus 62 ~~~l~~~~~~~~~~~--~ll~G~~G~GKT~l~~~l~~~~~~~~~ 103 (309)
+..+.+.+.++-.+. +++.|+||+|||+++..++..+...+.
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~ 123 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQM 123 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCC
Confidence 345556565543333 899999999999999999888754433
No 426
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.47 E-value=0.0013 Score=50.29 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=21.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
++|+|++|+||||+++.++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999998
No 427
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.47 E-value=0.0011 Score=57.60 Aligned_cols=37 Identities=22% Similarity=0.347 Sum_probs=28.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEec
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 112 (309)
.++|.||+|+||||++..++..+...+..+.++..+.
T Consensus 208 ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDt 244 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDT 244 (407)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCc
Confidence 3899999999999999999988755555555544443
No 428
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.46 E-value=0.00096 Score=57.22 Aligned_cols=47 Identities=21% Similarity=0.308 Sum_probs=35.0
Q ss_pred Ccccccc----ChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHc
Q 021660 51 SLADVAA----HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99 (309)
Q Consensus 51 ~~~~~ig----~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (309)
++++++. .++....|..++..+ .+++++|++|+||||++++++..+.
T Consensus 119 tl~~lv~~g~~~~~~~~~L~~~v~~~--~nilI~G~tGSGKTTll~aL~~~i~ 169 (323)
T PRK13833 119 PLDDYVTSKIMTEAQASVIRSAIDSR--LNIVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred CHHHHHHcCCCCHHHHHHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHHHh
Confidence 4455553 234456677777765 4699999999999999999999873
No 429
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.46 E-value=0.00065 Score=57.83 Aligned_cols=51 Identities=16% Similarity=0.309 Sum_probs=34.7
Q ss_pred CccEEEEEeCC-CCCCHHHHHHHHHHHHHhcCCc--eEEEEecCCcccchhhhcc
Q 021660 140 ASVKLVLLDEA-DAMTKDAQFALRRVIEKYTKNT--RFALICNQVNKIIPALQSR 191 (309)
Q Consensus 140 ~~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~~~--~~i~~~~~~~~l~~~l~~r 191 (309)
.++.++|+||. ..|.+.....+.+++....... .++++|.....+ ..+.+|
T Consensus 153 ~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~-~~~~d~ 206 (293)
T COG1131 153 HDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEA-EELCDR 206 (293)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHH-HHhCCE
Confidence 37889999995 5677888899999999877654 455555444333 333444
No 430
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.46 E-value=0.00092 Score=63.42 Aligned_cols=43 Identities=19% Similarity=0.352 Sum_probs=33.0
Q ss_pred CccEEEEEeCCC-CCCHHHHHHHHHHHHHhcCCceEEEEecCCc
Q 021660 140 ASVKLVLLDEAD-AMTKDAQFALRRVIEKYTKNTRFALICNQVN 182 (309)
Q Consensus 140 ~~~~lliiDe~~-~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 182 (309)
.+|+++++||+- .+..+....+.+.|........+|+++++..
T Consensus 626 ~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ 669 (709)
T COG2274 626 SKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLS 669 (709)
T ss_pred cCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccch
Confidence 378999999975 4566777788888888776777788887554
No 431
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.46 E-value=0.00018 Score=56.25 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=22.9
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Q 021660 74 LPHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
+..++|+|+||+|||++++.+++.+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3459999999999999999999998
No 432
>PRK06696 uridine kinase; Validated
Probab=97.45 E-value=0.00026 Score=57.83 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=32.7
Q ss_pred ChHHHHHHHHHHhc---CCCCeEEEECCCCCcHHHHHHHHHHHHccCc
Q 021660 58 HRDIVDTIDRLTSE---NRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102 (309)
Q Consensus 58 ~~~~~~~l~~~~~~---~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~ 102 (309)
+...++.|...+.. ..+..+.|.|++|+||||+++.++..+...+
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g 50 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKRG 50 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 34556666666542 2333499999999999999999999985443
No 433
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.44 E-value=0.0016 Score=53.51 Aligned_cols=45 Identities=13% Similarity=0.304 Sum_probs=33.9
Q ss_pred ccEEEEEeC-CCCCCHHHHHHHHHHHHHhcC-CceEEEEecCCcccc
Q 021660 141 SVKLVLLDE-ADAMTKDAQFALRRVIEKYTK-NTRFALICNQVNKII 185 (309)
Q Consensus 141 ~~~lliiDe-~~~l~~~~~~~l~~~l~~~~~-~~~~i~~~~~~~~l~ 185 (309)
++.++++|| +..+....+..+..+|.+... ...+++++.+...+.
T Consensus 157 ~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~ 203 (254)
T COG1121 157 NPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVM 203 (254)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhH
Confidence 788999999 567778888999999997765 445666666665544
No 434
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.44 E-value=0.00052 Score=67.59 Aligned_cols=114 Identities=12% Similarity=0.208 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHH-------HHHHhhhc
Q 021660 59 RDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQ-------QIQDFAST 131 (309)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 131 (309)
++-...+...... ....++.|++|+||||++..+...+...++. ++-+..+ ......+.+ .+..+...
T Consensus 384 ~eQ~~Av~~i~~~--~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~--V~g~ApT-gkAA~~L~e~~Gi~a~TIas~ll~ 458 (1102)
T PRK13826 384 DEQKTAIEHVAGP--ARIAAVVGRAGAGKTTMMKAAREAWEAAGYR--VVGGALA-GKAAEGLEKEAGIQSRTLSSWELR 458 (1102)
T ss_pred HHHHHHHHHHhcc--CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCe--EEEEcCc-HHHHHHHHHhhCCCeeeHHHHHhh
Confidence 3334444443322 2348999999999999999998877554443 2222222 111111111 11111100
Q ss_pred cccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021660 132 QSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (309)
Q Consensus 132 ~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~ 179 (309)
....-..-....+|||||+..+.......|+..... ....+|+++.
T Consensus 459 ~~~~~~~l~~~~vlVIDEAsMv~~~~m~~Ll~~~~~--~garvVLVGD 504 (1102)
T PRK13826 459 WNQGRDQLDNKTVFVLDEAGMVASRQMALFVEAVTR--AGAKLVLVGD 504 (1102)
T ss_pred hccCccCCCCCcEEEEECcccCCHHHHHHHHHHHHh--cCCEEEEECC
Confidence 000001111467999999999988888877777653 3677888874
No 435
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.44 E-value=0.0017 Score=54.61 Aligned_cols=36 Identities=31% Similarity=0.371 Sum_probs=28.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEe
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELN 111 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 111 (309)
.++|+||+|+||||++..++..+...+..+.++..+
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 388889999999999999999886665555555444
No 436
>PRK10436 hypothetical protein; Provisional
Probab=97.43 E-value=0.0037 Score=56.48 Aligned_cols=50 Identities=22% Similarity=0.341 Sum_probs=37.8
Q ss_pred CccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccC
Q 021660 51 SLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101 (309)
Q Consensus 51 ~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~ 101 (309)
+++++--.+...+.+.+.+... .+.++++||+|+||||++.++.+.+...
T Consensus 196 ~L~~LG~~~~~~~~l~~~~~~~-~GliLvtGpTGSGKTTtL~a~l~~~~~~ 245 (462)
T PRK10436 196 DLETLGMTPAQLAQFRQALQQP-QGLILVTGPTGSGKTVTLYSALQTLNTA 245 (462)
T ss_pred CHHHcCcCHHHHHHHHHHHHhc-CCeEEEECCCCCChHHHHHHHHHhhCCC
Confidence 5566655666777777777554 2459999999999999999988887543
No 437
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.43 E-value=0.0004 Score=58.82 Aligned_cols=36 Identities=25% Similarity=0.415 Sum_probs=27.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccC-c-ccccEEEEe
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGA-Q-YHNMILELN 111 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~-~-~~~~~~~~~ 111 (309)
.++|.||+|+||||++..++..+... + ..+.++..+
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D 233 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTD 233 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 48999999999999999999887543 2 455555444
No 438
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.43 E-value=0.00027 Score=46.02 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
+.+.|++|+|||++++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999997
No 439
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.43 E-value=0.002 Score=50.55 Aligned_cols=56 Identities=13% Similarity=0.244 Sum_probs=36.1
Q ss_pred CccEEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CceEEEEecCCcccchhhhcceeEEE
Q 021660 140 ASVKLVLLDEA-DAMTKDAQFALRRVIEKYTK-NTRFALICNQVNKIIPALQSRCTRFR 196 (309)
Q Consensus 140 ~~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~-~~~~i~~~~~~~~l~~~l~~r~~~i~ 196 (309)
..++++++||. ..+.-.....+.+.+..... +-.+|+++...+. .+++-+|+.+++
T Consensus 150 h~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~E-vealCDrvivlh 207 (245)
T COG4555 150 HDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQE-VEALCDRVIVLH 207 (245)
T ss_pred cCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHH-HHHhhheEEEEe
Confidence 47899999995 34444556777788876655 4455666655544 356767765543
No 440
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.43 E-value=0.0016 Score=54.98 Aligned_cols=159 Identities=21% Similarity=0.294 Sum_probs=80.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCC-----CcchHHHHHHHHHhhhccccccCCCCccEEEEEeC
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD-----DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDE 149 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe 149 (309)
+.++|+||+++|||.++-.+|+++ +..++..++-. +.+..... .... .+-.--+||.
T Consensus 4 ~~i~I~GPTAsGKT~lai~LAk~~-----~~eIIs~DSmQvYr~mdIGTAKps--~~e~-----------~~vpHhliDi 65 (308)
T COG0324 4 KLIVIAGPTASGKTALAIALAKRL-----GGEIISLDSMQVYRGLDIGTAKPS--LEEL-----------AGVPHHLIDI 65 (308)
T ss_pred cEEEEECCCCcCHHHHHHHHHHHc-----CCcEEecchhhhcCCCcccCCCCC--HHHH-----------cCCCEEEecc
Confidence 348999999999999999999998 44555444321 11111100 0010 0222355665
Q ss_pred CCCC---C-HHHHHHHHHHHHHhcCCc-eEEEEecCCcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCC-----
Q 021660 150 ADAM---T-KDAQFALRRVIEKYTKNT-RFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLD----- 219 (309)
Q Consensus 150 ~~~l---~-~~~~~~l~~~l~~~~~~~-~~i~~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~----- 219 (309)
++-- + .+........+++..... ..|+++.. .....++..- +...|....+.+..++..+...|..
T Consensus 66 ~~p~e~ysa~~f~~~a~~~i~~i~~rgk~pIlVGGT-glY~~aL~~g---~~~~p~~~~~~r~~~~~~~~~~g~~~L~~~ 141 (308)
T COG0324 66 RDPTESYSAAEFQRDALAAIDDILARGKLPILVGGT-GLYLKALLEG---LSLLPEADPEVRRRLEAELAELGNDALHAE 141 (308)
T ss_pred cCccccccHHHHHHHHHHHHHHHHhCCCCcEEEccH-HHHHHHHHcC---CCCCCCCCHHHHHHHHHHHHhcCHHHHHHH
Confidence 4422 2 233455666677665543 33333321 1222222221 2322333444444445555444431
Q ss_pred CCHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcCH
Q 021660 220 VTEGGLAALVRLCNGDMRKALNILQSTHMASQQITE 255 (309)
Q Consensus 220 ~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~~~i~~ 255 (309)
+..-.-...++....|++.++..|+-.-..++.++.
T Consensus 142 L~~~Dp~~a~~i~pnD~~Ri~RALEv~~~tGk~~s~ 177 (308)
T COG0324 142 LKKIDPEAAAKIHPNDPQRIIRALEVYYLTGKPISE 177 (308)
T ss_pred HHhhCHHHHHhcCCCchhHHHHHHHHHHHHCCCHHH
Confidence 111111223445578999999999887776654433
No 441
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=97.42 E-value=0.0031 Score=58.74 Aligned_cols=49 Identities=18% Similarity=0.272 Sum_probs=37.9
Q ss_pred CccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHcc
Q 021660 51 SLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100 (309)
Q Consensus 51 ~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (309)
+++++--.+...+.+.+++.... +.++++||+|+||||++..+.+.++.
T Consensus 294 ~l~~lg~~~~~~~~l~~~~~~~~-Glilv~G~tGSGKTTtl~a~l~~~~~ 342 (564)
T TIGR02538 294 DIDKLGFEPDQKALFLEAIHKPQ-GMVLVTGPTGSGKTVSLYTALNILNT 342 (564)
T ss_pred CHHHcCCCHHHHHHHHHHHHhcC-CeEEEECCCCCCHHHHHHHHHHhhCC
Confidence 45666557777778877775543 45999999999999999999988854
No 442
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.42 E-value=0.0025 Score=54.56 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=22.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCc
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQ 102 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~ 102 (309)
+.|+||||+|||+|+..++......+
T Consensus 58 teI~G~~GsGKTtLaL~~~~~~~~~g 83 (321)
T TIGR02012 58 IEIYGPESSGKTTLALHAIAEAQKAG 83 (321)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 89999999999999998887765443
No 443
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.42 E-value=0.0022 Score=55.11 Aligned_cols=25 Identities=20% Similarity=0.483 Sum_probs=22.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHc
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLY 99 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (309)
.+++|.||+|+||||++++++..+.
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCC
Confidence 5699999999999999999998874
No 444
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.42 E-value=0.0018 Score=51.51 Aligned_cols=22 Identities=45% Similarity=0.860 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
++|.|+||+||||+++.+++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7999999999999999999986
No 445
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.41 E-value=0.018 Score=46.22 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~ 97 (309)
..++|.|++|+|||+++..+...
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcc
Confidence 45999999999999999998876
No 446
>PRK04040 adenylate kinase; Provisional
Probab=97.41 E-value=0.0029 Score=50.14 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=21.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++++|+||+||||+++.+++.+
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999998
No 447
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.41 E-value=0.0032 Score=48.64 Aligned_cols=102 Identities=22% Similarity=0.221 Sum_probs=52.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccCc----------cc--ccEEE----EecCCCcchHHHHHHHHHhhhccccccCCC
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGAQ----------YH--NMILE----LNASDDRGIDVVRQQIQDFASTQSFSFGVK 139 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~----------~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (309)
..+++||.|+|||++++.++-.+.... .+ ..... +......+...-...+........ .
T Consensus 23 ~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~~L~~~~-----~ 97 (162)
T cd03227 23 LTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILALAS-----L 97 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeeccccHHHHHHHHHHHHhcC-----C
Confidence 599999999999999999765553222 11 11111 001111111111111222211100 0
Q ss_pred CccEEEEEeCCCC-CCHHHHHHHHHHHHHhc-CCceEEEEecCCc
Q 021660 140 ASVKLVLLDEADA-MTKDAQFALRRVIEKYT-KNTRFALICNQVN 182 (309)
Q Consensus 140 ~~~~lliiDe~~~-l~~~~~~~l~~~l~~~~-~~~~~i~~~~~~~ 182 (309)
.++.++++||... +.+.....+...+.+.. ....+|++|....
T Consensus 98 ~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~ 142 (162)
T cd03227 98 KPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE 142 (162)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 1468999999754 45555566666665442 2356666665554
No 448
>PRK13764 ATPase; Provisional
Probab=97.41 E-value=0.00078 Score=62.38 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=24.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccCc
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGAQ 102 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~ 102 (309)
.+++++||+|+||||++++++..+...+
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~ 285 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMG 285 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCC
Confidence 4599999999999999999999986443
No 449
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.41 E-value=0.0016 Score=52.62 Aligned_cols=46 Identities=13% Similarity=0.065 Sum_probs=33.6
Q ss_pred ccEEEEEeCC-CCCCHHHHHHHHHHHHHh-cCCceEEEEecCCcccch
Q 021660 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKY-TKNTRFALICNQVNKIIP 186 (309)
Q Consensus 141 ~~~lliiDe~-~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~~~l~~ 186 (309)
++.++++||. ..+.......+.+++.+. .....+|+++++...+..
T Consensus 145 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 145 NRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG 192 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc
Confidence 6789999995 466777788888888764 335567777877665543
No 450
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.41 E-value=0.00029 Score=57.60 Aligned_cols=45 Identities=13% Similarity=0.375 Sum_probs=33.3
Q ss_pred ccEEEEEeCCC-CCCHHHHHHHHHHHHHhcCC--ceEEEEecCCcccc
Q 021660 141 SVKLVLLDEAD-AMTKDAQFALRRVIEKYTKN--TRFALICNQVNKII 185 (309)
Q Consensus 141 ~~~lliiDe~~-~l~~~~~~~l~~~l~~~~~~--~~~i~~~~~~~~l~ 185 (309)
++.++++||.- .+.+.....+.+++.+.... ..+|++|++.+.+.
T Consensus 156 ~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~ 203 (235)
T COG1122 156 GPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVL 203 (235)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHH
Confidence 67899999964 56677788889998887654 36777777665543
No 451
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.41 E-value=0.0013 Score=56.56 Aligned_cols=48 Identities=19% Similarity=0.283 Sum_probs=34.8
Q ss_pred CCCcccccc----ChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHH
Q 021660 49 PQSLADVAA----HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 49 p~~~~~~ig----~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
+.++++++. .+.....+..++..+ .+++++|++|+||||++++++..+
T Consensus 121 ~~tl~~l~~~g~~~~~~~~~L~~~v~~~--~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 121 IFTLDQYVERGIMTAAQREAIIAAVRAH--RNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCCHHHHHhcCCCCHHHHHHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHhh
Confidence 335666653 234455666666654 569999999999999999999875
No 452
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.40 E-value=0.0023 Score=51.92 Aligned_cols=23 Identities=43% Similarity=0.790 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++++|+||+||||+++.+++.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999987
No 453
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.40 E-value=0.0014 Score=58.25 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=27.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccCcccccEEEE
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 110 (309)
.++|+|++|+||||++..+|..+...+..+.++..
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~ 136 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCA 136 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 38999999999999999999988665554444433
No 454
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=97.39 E-value=0.001 Score=51.89 Aligned_cols=101 Identities=17% Similarity=0.263 Sum_probs=51.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccCc---------------ccccEEEEecCCCcchHHHHHHHHHh-hhccccccCC
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGAQ---------------YHNMILELNASDDRGIDVVRQQIQDF-ASTQSFSFGV 138 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (309)
+.++|.||+|+|||+|...+...-..+. ....+.-++.+ |...++..+.+. ......
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~~~~~~~~~~~~~lvD~P---GH~rlr~~~~~~~~~~~~~---- 76 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNIAYNVNNSKGKKLRLVDIP---GHPRLRSKLLDELKYLSNA---- 76 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---SSEEEECCGSSTCGTCECEEEET---T-HCCCHHHHHHHHHHGGE----
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCceEEeecCCCCEEEEEECC---CcHHHHHHHHHhhhchhhC----
Confidence 5599999999999999998887632110 00111111211 222222222221 111111
Q ss_pred CCccEEEEEeCCCCC--CHHHHHHHHHHHHHhc---CCceEEEEecCCccc
Q 021660 139 KASVKLVLLDEADAM--TKDAQFALRRVIEKYT---KNTRFALICNQVNKI 184 (309)
Q Consensus 139 ~~~~~lliiDe~~~l--~~~~~~~l~~~l~~~~---~~~~~i~~~~~~~~l 184 (309)
..-|.+||-...- ..+..+.|+.++.... ..++++++||..+..
T Consensus 77 --k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~ 125 (181)
T PF09439_consen 77 --KGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLF 125 (181)
T ss_dssp --EEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTST
T ss_pred --CEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccc
Confidence 4567788854211 1344677888887654 677888889887654
No 455
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.38 E-value=0.00015 Score=53.46 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
++|.|++|+||||+++.+++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999996
No 456
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.38 E-value=0.002 Score=50.98 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
..++|+||+|+|||++++.+.+..
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 349999999999999999998875
No 457
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.37 E-value=0.00038 Score=56.92 Aligned_cols=41 Identities=29% Similarity=0.429 Sum_probs=32.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCc
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR 116 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 116 (309)
.+-|+||||.|||||+..+...+...+..+-++.++++...
T Consensus 31 ~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~ 71 (266)
T PF03308_consen 31 VIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPF 71 (266)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGC
T ss_pred EEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCC
Confidence 38999999999999999999999888888888888877543
No 458
>PRK05973 replicative DNA helicase; Provisional
Probab=97.37 E-value=0.0023 Score=52.36 Aligned_cols=35 Identities=29% Similarity=0.348 Sum_probs=26.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCcccccEEEEe
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELN 111 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 111 (309)
++|.|+||+|||+++..++......+....|+.+.
T Consensus 67 ~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 67 VLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 89999999999999999888764444444444443
No 459
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.37 E-value=0.0017 Score=51.45 Aligned_cols=39 Identities=18% Similarity=0.159 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHc
Q 021660 59 RDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99 (309)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (309)
+...+.+...+..+ ..++|.||+|+||||+++.++..+.
T Consensus 12 ~~~~~~l~~~v~~g--~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 12 PLQAAYLWLAVEAR--KNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred HHHHHHHHHHHhCC--CEEEEECCCCCCHHHHHHHHHhhcC
Confidence 45566666666665 4599999999999999999998874
No 460
>PRK13947 shikimate kinase; Provisional
Probab=97.37 E-value=0.00025 Score=55.34 Aligned_cols=24 Identities=42% Similarity=0.477 Sum_probs=22.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+++|.|+||+|||++++.+++.+
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 369999999999999999999998
No 461
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.37 E-value=0.01 Score=49.59 Aligned_cols=28 Identities=29% Similarity=0.528 Sum_probs=24.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccCc
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGAQ 102 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~ 102 (309)
+.+|++||.|+||||.+.++...++...
T Consensus 126 GLILVTGpTGSGKSTTlAamId~iN~~~ 153 (353)
T COG2805 126 GLILVTGPTGSGKSTTLAAMIDYINKHK 153 (353)
T ss_pred ceEEEeCCCCCcHHHHHHHHHHHHhccC
Confidence 4599999999999999999999986543
No 462
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.36 E-value=0.0019 Score=49.22 Aligned_cols=20 Identities=35% Similarity=0.816 Sum_probs=18.9
Q ss_pred EECCCCCcHHHHHHHHHHHH
Q 021660 79 LYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 79 l~G~~G~GKT~l~~~l~~~~ 98 (309)
|.||||+||||+++.+++..
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999997
No 463
>PRK03839 putative kinase; Provisional
Probab=97.36 E-value=0.00022 Score=56.24 Aligned_cols=23 Identities=39% Similarity=0.605 Sum_probs=21.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.|+||+||||+++.+++.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999998
No 464
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.36 E-value=0.0006 Score=55.19 Aligned_cols=44 Identities=11% Similarity=0.319 Sum_probs=33.1
Q ss_pred CccEEEEEeCC-CCCCHHHHHHHHHHHHHhcCCceEEEEecCCcc
Q 021660 140 ASVKLVLLDEA-DAMTKDAQFALRRVIEKYTKNTRFALICNQVNK 183 (309)
Q Consensus 140 ~~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 183 (309)
.++.++++||. ..+.......+.+++.+......+|+++++...
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~ 191 (211)
T cd03264 147 GDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVED 191 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHH
Confidence 37889999995 466778888899999877655667777765543
No 465
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.36 E-value=0.00035 Score=60.16 Aligned_cols=40 Identities=23% Similarity=0.285 Sum_probs=27.3
Q ss_pred ccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEe-cC
Q 021660 141 SVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC-NQ 180 (309)
Q Consensus 141 ~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~-~~ 180 (309)
.-.+|.+||++.-.-...-.|..+++..-.+++|+++| |.
T Consensus 193 ea~lLCFDEfQVTDVADAmiL~rLf~~Lf~~GvVlvATSNR 233 (467)
T KOG2383|consen 193 EAILLCFDEFQVTDVADAMILKRLFEHLFKNGVVLVATSNR 233 (467)
T ss_pred hceeeeechhhhhhHHHHHHHHHHHHHHHhCCeEEEEeCCC
Confidence 45799999998866655556667777665556555554 54
No 466
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.36 E-value=0.0022 Score=51.82 Aligned_cols=43 Identities=21% Similarity=0.274 Sum_probs=31.1
Q ss_pred CccEEEEEeCCC-CCCHHHHHHHHHHHHHhcC-CceEEEEecCCc
Q 021660 140 ASVKLVLLDEAD-AMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (309)
Q Consensus 140 ~~~~lliiDe~~-~l~~~~~~~l~~~l~~~~~-~~~~i~~~~~~~ 182 (309)
.++.++++||.. .+.......+.+++..... ...+|+++.+..
T Consensus 145 ~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~ 189 (210)
T cd03269 145 HDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME 189 (210)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
Confidence 367899999954 6677788888888887543 456666666554
No 467
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.35 E-value=0.0032 Score=51.80 Aligned_cols=44 Identities=23% Similarity=0.428 Sum_probs=34.0
Q ss_pred ccEEEEEeCC-CCCCHHHHHHHHHHHHHhcCCceEEEEecCCccc
Q 021660 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKI 184 (309)
Q Consensus 141 ~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l 184 (309)
++.++++||. ..+.......+.+++........+|+++++...+
T Consensus 156 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 200 (234)
T cd03251 156 DPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTI 200 (234)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH
Confidence 6889999995 5677778888999998776566677777766554
No 468
>PRK02496 adk adenylate kinase; Provisional
Probab=97.35 E-value=0.0035 Score=49.49 Aligned_cols=23 Identities=39% Similarity=0.853 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.||||+||||+++.+++.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 469
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.34 E-value=0.00079 Score=62.56 Aligned_cols=41 Identities=17% Similarity=0.240 Sum_probs=29.8
Q ss_pred CccEEEEEeCCCC-CCHHHHHHHHHHHHHhcCCceEEEEecC
Q 021660 140 ASVKLVLLDEADA-MTKDAQFALRRVIEKYTKNTRFALICNQ 180 (309)
Q Consensus 140 ~~~~lliiDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~~~~ 180 (309)
.++.++++||+.. +..+....+.+.+....++..+|+++++
T Consensus 487 ~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHr 528 (529)
T TIGR02868 487 ADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHH 528 (529)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 3678999999754 5667778888888876556666666653
No 470
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.34 E-value=0.0023 Score=51.45 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=19.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~ 97 (309)
..++|+||.|+|||++++.++..
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999988644
No 471
>PRK07667 uridine kinase; Provisional
Probab=97.33 E-value=0.00054 Score=54.63 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=28.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEe
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELN 111 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 111 (309)
.+.|.|++|+||||+++.++..+...+....++..+
T Consensus 19 iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~D 54 (193)
T PRK07667 19 ILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHID 54 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 389999999999999999999986655544444444
No 472
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.33 E-value=0.016 Score=44.07 Aligned_cols=123 Identities=15% Similarity=0.157 Sum_probs=63.7
Q ss_pred EECCCCCcHHHHHHHHHHHHccCcccccEEEEecCC-CcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHH
Q 021660 79 LYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD-DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDA 157 (309)
Q Consensus 79 l~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~ 157 (309)
=.+..||||||++.++.+.+.. +..+.-+... ......+...+..+... ...+||.|--+.+. ..
T Consensus 4 PIAtiGCGKTTva~aL~~LFg~----wgHvQnDnI~~k~~~~f~~~~l~~L~~~---------~~~vViaDRNNh~~-re 69 (168)
T PF08303_consen 4 PIATIGCGKTTVALALSNLFGE----WGHVQNDNITGKRKPKFIKAVLELLAKD---------THPVVIADRNNHQK-RE 69 (168)
T ss_pred eecCCCcCHHHHHHHHHHHcCC----CCccccCCCCCCCHHHHHHHHHHHHhhC---------CCCEEEEeCCCchH-HH
Confidence 3578999999999999988722 1112111111 11222222233333111 56789999766554 34
Q ss_pred HHHHHHHHHHhcC-------CceEEEEecCC-c---cc----chhhhcce---eEEEecCCChHHHHHHHHHHHHH
Q 021660 158 QFALRRVIEKYTK-------NTRFALICNQV-N---KI----IPALQSRC---TRFRFAPLEPVHVTERLKHVIEA 215 (309)
Q Consensus 158 ~~~l~~~l~~~~~-------~~~~i~~~~~~-~---~l----~~~l~~r~---~~i~~~~~~~~~~~~~l~~~~~~ 215 (309)
...|+..++.... ...+|...=.. . .+ ...+..|. +.+............++...+++
T Consensus 70 R~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~r 145 (168)
T PF08303_consen 70 RKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIKR 145 (168)
T ss_pred HHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHHh
Confidence 5777777776544 44555443111 1 11 12233343 44555555555566666555554
No 473
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=97.33 E-value=0.0017 Score=54.95 Aligned_cols=22 Identities=18% Similarity=0.635 Sum_probs=20.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (309)
.++|.||+|+|||.|+-.+|+.
T Consensus 6 ii~I~GpTasGKS~LAl~LA~~ 27 (300)
T PRK14729 6 IVFIFGPTAVGKSNILFHFPKG 27 (300)
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 4899999999999999999988
No 474
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.32 E-value=0.0034 Score=50.47 Aligned_cols=40 Identities=10% Similarity=0.179 Sum_probs=28.2
Q ss_pred ccEEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CceEEEEecC
Q 021660 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTK--NTRFALICNQ 180 (309)
Q Consensus 141 ~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~--~~~~i~~~~~ 180 (309)
++.++++||. ..+.......+.+++.+... ...+|++++.
T Consensus 136 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h 178 (202)
T cd03233 136 RASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQ 178 (202)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 6789999995 56677778888888887643 3344555544
No 475
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.30 E-value=0.02 Score=51.30 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=26.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHHc-cCcccccEEEEe
Q 021660 77 LLLYGPPGTGKTSTILAVARKLY-GAQYHNMILELN 111 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~ 111 (309)
++++|++|+||||++..+|..+. ..+..+.++..+
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D 137 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD 137 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 89999999999999999998874 344444444444
No 476
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.30 E-value=0.0025 Score=54.63 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=22.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCc
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQ 102 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~ 102 (309)
+.++||||+|||+++..++......+
T Consensus 58 teI~Gp~GsGKTtLal~~~~~~~~~g 83 (325)
T cd00983 58 IEIYGPESSGKTTLALHAIAEAQKLG 83 (325)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 89999999999999999887765443
No 477
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.30 E-value=0.0024 Score=51.99 Aligned_cols=44 Identities=18% Similarity=0.309 Sum_probs=33.2
Q ss_pred CccEEEEEeCC-CCCCHHHHHHHHHHHHHhcCCceEEEEecCCcc
Q 021660 140 ASVKLVLLDEA-DAMTKDAQFALRRVIEKYTKNTRFALICNQVNK 183 (309)
Q Consensus 140 ~~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 183 (309)
.++.++++||. ..+.......+.+++........+|+++++...
T Consensus 150 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~ 194 (220)
T cd03263 150 GGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDE 194 (220)
T ss_pred cCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 37889999995 566777888899999876655667777776553
No 478
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.30 E-value=0.0023 Score=51.66 Aligned_cols=42 Identities=19% Similarity=0.320 Sum_probs=30.1
Q ss_pred ccEEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CceEEEEecCCc
Q 021660 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (309)
Q Consensus 141 ~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~-~~~~i~~~~~~~ 182 (309)
++.++++||. ..+.......+.+++.+... ...+|+++++..
T Consensus 144 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~ 187 (208)
T cd03268 144 NPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS 187 (208)
T ss_pred CCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 6789999995 45667778888888886543 455666666554
No 479
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.29 E-value=0.0026 Score=50.31 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVAR 96 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~ 96 (309)
++|+||.|.|||++++.++-
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 68999999999999999983
No 480
>PRK00625 shikimate kinase; Provisional
Probab=97.28 E-value=0.00033 Score=54.64 Aligned_cols=23 Identities=43% Similarity=0.522 Sum_probs=21.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
+++|.|.||+||||+++.+++.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999998
No 481
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0049 Score=53.64 Aligned_cols=41 Identities=32% Similarity=0.605 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCCCe--EEEECCCCCcHHHHHHHHHHHHccCc
Q 021660 62 VDTIDRLTSENRLPH--LLLYGPPGTGKTSTILAVARKLYGAQ 102 (309)
Q Consensus 62 ~~~l~~~~~~~~~~~--~ll~G~~G~GKT~l~~~l~~~~~~~~ 102 (309)
...+.+.+-++-.+. +||-|.||+|||||+..++..+...+
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~ 121 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG 121 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC
Confidence 345566666654333 99999999999999999999985444
No 482
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.28 E-value=0.0018 Score=52.34 Aligned_cols=43 Identities=14% Similarity=0.339 Sum_probs=31.4
Q ss_pred CccEEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CceEEEEecCCc
Q 021660 140 ASVKLVLLDEA-DAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (309)
Q Consensus 140 ~~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~-~~~~i~~~~~~~ 182 (309)
.++.++++||. ..+.......+.+++.+... ...+|+++++..
T Consensus 151 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~ 195 (211)
T cd03225 151 MDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD 195 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 37789999995 56677778888888887643 456777776654
No 483
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=97.28 E-value=0.0034 Score=48.37 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
+++.|.+|+|||+|+..+...-
T Consensus 3 i~vvG~~~vGKTsli~~~~~~~ 24 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMDG 24 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999887643
No 484
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.27 E-value=0.0018 Score=56.73 Aligned_cols=60 Identities=15% Similarity=0.304 Sum_probs=37.3
Q ss_pred ccEEEEEeCC-CCCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEecCCChHHH
Q 021660 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHV 205 (309)
Q Consensus 141 ~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~l~~r~~~i~~~~~~~~~~ 205 (309)
.+.|||+||. ..+.-+....|.+.|++... -+|+++.+...+.. .-|..+-+..-+.+++
T Consensus 722 ~PDvlILDEPTNNLDIESIDALaEAIney~G--gVi~VsHDeRLi~e---T~C~LwVvE~Q~i~eI 782 (807)
T KOG0066|consen 722 GPDVLILDEPTNNLDIESIDALAEAINEYNG--GVIMVSHDERLIVE---TDCNLWVVENQGIDEI 782 (807)
T ss_pred CCCEEEecCCCCCcchhhHHHHHHHHHhccC--cEEEEecccceeee---cCceEEEEccCChhhc
Confidence 6789999995 56777888999999998853 35555554332221 2354444444444333
No 485
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=97.27 E-value=0.0049 Score=50.04 Aligned_cols=101 Identities=16% Similarity=0.244 Sum_probs=56.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccCcccccEEE---------------EecCCCcchHHHHHHHHHhhhccccccCCCC
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILE---------------LNASDDRGIDVVRQQIQDFASTQSFSFGVKA 140 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (309)
.++++|++|+||||++..+............+.. +..-+..+...+......... ..
T Consensus 7 kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~--------~~ 78 (219)
T COG1100 7 KIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYR--------GA 78 (219)
T ss_pred EEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhc--------CC
Confidence 3899999999999999999988765433222111 111122233343333222211 11
Q ss_pred ccEEEEEeCCC-CCCHHHHHHHHHHHHHhc-CCceEEEEecCCccc
Q 021660 141 SVKLVLLDEAD-AMTKDAQFALRRVIEKYT-KNTRFALICNQVNKI 184 (309)
Q Consensus 141 ~~~lliiDe~~-~l~~~~~~~l~~~l~~~~-~~~~~i~~~~~~~~l 184 (309)
...+++.|... .-..+....+...+.... ...+++++.|..+..
T Consensus 79 ~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (219)
T COG1100 79 NGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLF 124 (219)
T ss_pred CEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccc
Confidence 45667777665 333344455555555544 367788888766543
No 486
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.27 E-value=0.0019 Score=53.31 Aligned_cols=41 Identities=12% Similarity=0.326 Sum_probs=28.7
Q ss_pred ccEEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CceEEEEecCC
Q 021660 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTK--NTRFALICNQV 181 (309)
Q Consensus 141 ~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~--~~~~i~~~~~~ 181 (309)
++.++++||- ..|.-..+-.+++++.+... ...+|++..+.
T Consensus 156 ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDl 199 (258)
T COG1120 156 ETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDL 199 (258)
T ss_pred CCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 6789999995 45566667788888887652 34566666544
No 487
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.27 E-value=0.0037 Score=50.56 Aligned_cols=22 Identities=45% Similarity=0.841 Sum_probs=20.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
++|.||||+||||+++.+++.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999886
No 488
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.26 E-value=0.0018 Score=52.59 Aligned_cols=44 Identities=18% Similarity=0.342 Sum_probs=31.6
Q ss_pred CccEEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CceEEEEecCCcc
Q 021660 140 ASVKLVLLDEA-DAMTKDAQFALRRVIEKYTK-NTRFALICNQVNK 183 (309)
Q Consensus 140 ~~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~-~~~~i~~~~~~~~ 183 (309)
.++.++++||. ..+.......+.+++.+... ...+|+++++.+.
T Consensus 155 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~ 200 (216)
T TIGR00960 155 HKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINL 200 (216)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 37889999995 45667778888888887532 4567777776543
No 489
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.26 E-value=0.0013 Score=52.80 Aligned_cols=42 Identities=24% Similarity=0.312 Sum_probs=30.9
Q ss_pred ccEEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CceEEEEecCCc
Q 021660 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (309)
Q Consensus 141 ~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~-~~~~i~~~~~~~ 182 (309)
++.++++||. ..+.......+.+++.+... ...+|++++...
T Consensus 122 ~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~ 165 (200)
T cd03217 122 EPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR 165 (200)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 7889999995 46677778888888887643 456677776654
No 490
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.26 E-value=0.00093 Score=54.84 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCcccccE
Q 021660 60 DIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMI 107 (309)
Q Consensus 60 ~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~ 107 (309)
.+++.+..+......+. +.|.||+|+||||+++.++..+...+....+
T Consensus 18 ~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v 66 (229)
T PRK09270 18 PLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAI 66 (229)
T ss_pred HHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceE
Confidence 34455566655533333 8999999999999999999998654443333
No 491
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.25 E-value=0.00072 Score=49.98 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=22.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHc
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLY 99 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~ 99 (309)
.++|.|+.|+||||+++.+++.+.
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 499999999999999999999983
No 492
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.25 E-value=0.00064 Score=55.70 Aligned_cols=23 Identities=39% Similarity=0.632 Sum_probs=20.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+++.|+||+|||+++..++...
T Consensus 21 ~~li~G~~GsGKT~l~~q~l~~~ 43 (226)
T PF06745_consen 21 VVLISGPPGSGKTTLALQFLYNG 43 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCcHHHHHHHHHHh
Confidence 39999999999999999877554
No 493
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.25 E-value=0.0043 Score=51.45 Aligned_cols=82 Identities=13% Similarity=0.249 Sum_probs=48.9
Q ss_pred CccEEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CceEEEEecCCcccchhhhcceeEE------EecCCChHHHHHHHH
Q 021660 140 ASVKLVLLDEA-DAMTKDAQFALRRVIEKYTK--NTRFALICNQVNKIIPALQSRCTRF------RFAPLEPVHVTERLK 210 (309)
Q Consensus 140 ~~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~--~~~~i~~~~~~~~l~~~l~~r~~~i------~~~~~~~~~~~~~l~ 210 (309)
.++.++++||. ..+.......+.+++.+... ...+|+++++...+ ..+..++..+ .-..-++..+.+.+.
T Consensus 132 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~-~~~~d~i~~l~~~~~~~~~~~~~~~~~~~~~ 210 (246)
T cd03237 132 KDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMI-DYLADRLIVFEGEPSVNGVANPPQSLRSGMN 210 (246)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEEEEcCCCeeEEEeCCchHHHHHHH
Confidence 36789999995 46677778888888887532 45677777665432 2333443221 111223445556777
Q ss_pred HHHHHcCCCCCH
Q 021660 211 HVIEAEGLDVTE 222 (309)
Q Consensus 211 ~~~~~~~~~~~~ 222 (309)
..++..++.+..
T Consensus 211 ~~l~~~~~~~~~ 222 (246)
T cd03237 211 RFLKNLDITFRR 222 (246)
T ss_pred HHHHHCCCEEec
Confidence 777766665543
No 494
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.24 E-value=0.0018 Score=55.69 Aligned_cols=34 Identities=29% Similarity=0.368 Sum_probs=27.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccCcccccEEE
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILE 109 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~ 109 (309)
.++|.||+|+||||++..++..+...+..+.++.
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~ 149 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAA 149 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEe
Confidence 3899999999999999999999865554444443
No 495
>COG3378 Phage associated DNA primase [General function prediction only]
Probab=97.24 E-value=0.0048 Score=56.08 Aligned_cols=134 Identities=19% Similarity=0.304 Sum_probs=71.9
Q ss_pred cccccc-ChHHHHHHHHHHh---cCCC---CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHH
Q 021660 52 LADVAA-HRDIVDTIDRLTS---ENRL---PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQ 124 (309)
Q Consensus 52 ~~~~ig-~~~~~~~l~~~~~---~~~~---~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (309)
+.++.+ +.+....+.+++. .++. ..+.|+||-|.||++++..+...+....... .....
T Consensus 201 L~~~~~~d~el~~ll~~i~g~~l~g~~~~~k~~~l~G~G~nGKstf~~li~~llG~~n~~s----------~~~~~---- 266 (517)
T COG3378 201 LDRVAGGDPELRNLLQRIIGASLTGRVSEQKLFWLYGPGGNGKSTFVDLISNLLGRYNVTS----------APLTD---- 266 (517)
T ss_pred HHHhhcCCHHHHHHHHHHHhheecCcccceeEEEEEcCCCCChHHHHHHHHHHhccchhcc----------ccHHH----
Confidence 345555 6666666666653 2222 2389999999999999999988872221110 00000
Q ss_pred HHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHH--------------HhcCCceEEEEecCCccc---chh
Q 021660 125 IQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIE--------------KYTKNTRFALICNQVNKI---IPA 187 (309)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~--------------~~~~~~~~i~~~~~~~~l---~~~ 187 (309)
+.. ........+.-.+.+++..+|-+.=.-.....+..+.- ...+...+|+++|..+.+ ..+
T Consensus 267 ~~~-~~~~~~~~A~Lvg~~~v~~~E~~kg~l~~~~~lK~ltgGD~i~a~~K~kd~~~f~p~a~~i~~~N~~P~~~~~d~a 345 (517)
T COG3378 267 LEA-DDRHPFGLAALVGKRLVTVSETEKGRLDDEGKLKALTGGDVISAERKRKDFFSFTPNAKLIQATNHPPRIRGDDEA 345 (517)
T ss_pred hhh-hccCcchHHHhhCceEEEecCccccccccccceeeeccCCeeeehhccCCceEeccceeEEeecCCCCcccccchh
Confidence 000 11111112222267788888866521111111111100 112356778888887654 578
Q ss_pred hhcceeEEEecCC
Q 021660 188 LQSRCTRFRFAPL 200 (309)
Q Consensus 188 l~~r~~~i~~~~~ 200 (309)
+.+|..++.|+..
T Consensus 346 i~rR~~ivpF~~~ 358 (517)
T COG3378 346 IWRRLLIVPFEKQ 358 (517)
T ss_pred hhheeEEEecccc
Confidence 9999988888544
No 496
>PLN02348 phosphoribulokinase
Probab=97.24 E-value=0.028 Score=49.31 Aligned_cols=43 Identities=12% Similarity=0.121 Sum_probs=30.6
Q ss_pred ChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHcc
Q 021660 58 HRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYG 100 (309)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~ 100 (309)
.......+.........+. +-|.|++|+||||+++.++..+..
T Consensus 32 ~~~~~~~~~~~~~~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 32 KSPAASSVVVALAADDGTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred cCchhHHHHHhhccCCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3344444555444443344 789999999999999999999853
No 497
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.24 E-value=0.0051 Score=52.80 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
+.|+||||+|||+++..++-..
T Consensus 99 teI~G~~GsGKTql~lqla~~~ 120 (313)
T TIGR02238 99 TEVFGEFRCGKTQLSHTLCVTA 120 (313)
T ss_pred EEEECCCCCCcCHHHHHHHHHH
Confidence 8899999999999998877543
No 498
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.23 E-value=0.0014 Score=53.90 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=31.8
Q ss_pred CccEEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CceEEEEecCCcc
Q 021660 140 ASVKLVLLDEA-DAMTKDAQFALRRVIEKYTK-NTRFALICNQVNK 183 (309)
Q Consensus 140 ~~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~-~~~~i~~~~~~~~ 183 (309)
.++.++++||. ..+.......+.+++.+... ...+|+++++...
T Consensus 150 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~ 195 (232)
T cd03218 150 TNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRE 195 (232)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 37889999995 56677778888888876643 4567777776543
No 499
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=97.23 E-value=0.0093 Score=45.76 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
+++.|++|+|||+++..+...-
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~~ 23 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLINGE 23 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 7899999999999999988754
No 500
>PRK10867 signal recognition particle protein; Provisional
Probab=97.23 E-value=0.0028 Score=56.68 Aligned_cols=36 Identities=22% Similarity=0.379 Sum_probs=28.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccC-cccccEEEEec
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGA-QYHNMILELNA 112 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~-~~~~~~~~~~~ 112 (309)
++++|++|+||||++..+|..+... +..+.++..+.
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~ 139 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADV 139 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccc
Confidence 8999999999999999999887655 55555554443
Done!