Query 021660
Match_columns 309
No_of_seqs 194 out of 2430
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 07:25:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021660.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021660hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sxj_C Activator 1 40 kDa subu 100.0 3.3E-37 1.1E-41 267.4 29.5 267 39-308 11-282 (340)
2 2chq_A Replication factor C sm 100.0 6E-37 2E-41 263.6 24.5 267 39-308 3-269 (319)
3 1iqp_A RFCS; clamp loader, ext 100.0 3.6E-36 1.2E-40 259.6 29.1 267 39-308 11-277 (327)
4 1sxj_D Activator 1 41 kDa subu 100.0 2.6E-35 9.1E-40 256.9 26.1 274 34-308 18-305 (353)
5 1sxj_B Activator 1 37 kDa subu 100.0 1.1E-34 3.9E-39 249.8 27.8 264 39-308 7-271 (323)
6 3u61_B DNA polymerase accessor 100.0 7.8E-34 2.7E-38 244.7 27.3 254 38-308 11-274 (324)
7 1jr3_A DNA polymerase III subu 100.0 2.8E-33 9.5E-38 245.9 31.1 263 40-308 3-286 (373)
8 3pvs_A Replication-associated 100.0 4.1E-33 1.4E-37 248.0 27.5 254 41-308 14-296 (447)
9 1sxj_E Activator 1 40 kDa subu 100.0 6.9E-33 2.4E-37 241.8 23.7 265 41-308 2-304 (354)
10 2chg_A Replication factor C sm 100.0 9.9E-31 3.4E-35 213.1 27.5 222 39-263 3-224 (226)
11 1njg_A DNA polymerase III subu 100.0 7.3E-28 2.5E-32 198.8 25.8 220 39-263 9-249 (250)
12 2gno_A DNA polymerase III, gam 100.0 3.6E-28 1.2E-32 205.9 18.0 236 57-308 1-249 (305)
13 1sxj_A Activator 1 95 kDa subu 100.0 2.3E-27 7.8E-32 216.0 23.6 241 33-280 19-292 (516)
14 1a5t_A Delta prime, HOLB; zinc 99.9 4.3E-26 1.5E-30 196.7 19.9 223 58-293 7-252 (334)
15 3pfi_A Holliday junction ATP-d 99.9 2.2E-25 7.4E-30 193.1 22.3 209 38-262 14-251 (338)
16 1jr3_D DNA polymerase III, del 99.9 3.9E-26 1.3E-30 198.0 16.8 232 66-308 10-251 (343)
17 1hqc_A RUVB; extended AAA-ATPa 99.9 2.8E-24 9.4E-29 185.0 23.8 205 43-262 2-235 (324)
18 3uk6_A RUVB-like 2; hexameric 99.9 2.5E-24 8.5E-29 188.5 23.5 226 35-264 25-329 (368)
19 3bos_A Putative DNA replicatio 99.9 2.1E-23 7.3E-28 171.7 19.8 210 39-263 13-241 (242)
20 1in4_A RUVB, holliday junction 99.9 2.6E-22 8.8E-27 173.1 25.2 208 40-263 12-248 (334)
21 3vfd_A Spastin; ATPase, microt 99.9 8.2E-22 2.8E-26 173.5 24.1 242 42-297 104-385 (389)
22 2v1u_A Cell division control p 99.9 7.7E-22 2.6E-26 173.7 21.6 217 42-265 11-276 (387)
23 2c9o_A RUVB-like 1; hexameric 99.9 1.4E-21 4.8E-26 175.3 23.1 123 143-266 297-438 (456)
24 3eie_A Vacuolar protein sortin 99.9 2.2E-21 7.7E-26 166.4 21.7 196 42-247 7-232 (322)
25 1fnn_A CDC6P, cell division co 99.9 3.1E-21 1.1E-25 170.0 23.1 220 40-263 7-272 (389)
26 3b9p_A CG5977-PA, isoform A; A 99.9 6.8E-21 2.3E-25 161.8 22.8 192 42-247 10-237 (297)
27 2qp9_X Vacuolar protein sortin 99.9 1.4E-20 4.9E-25 163.3 25.1 192 43-248 41-266 (355)
28 4b4t_J 26S protease regulatory 99.9 2E-20 6.8E-25 161.7 24.2 200 48-262 143-386 (405)
29 3d8b_A Fidgetin-like protein 1 99.9 9.8E-21 3.4E-25 164.6 22.1 195 43-247 74-299 (357)
30 2qby_B CDC6 homolog 3, cell di 99.9 1.3E-21 4.5E-26 172.1 15.7 221 39-265 9-270 (384)
31 3syl_A Protein CBBX; photosynt 99.9 8.2E-21 2.8E-25 162.2 19.1 187 54-248 32-260 (309)
32 1lv7_A FTSH; alpha/beta domain 99.9 2E-20 6.9E-25 155.5 19.7 207 42-263 1-250 (257)
33 2z4s_A Chromosomal replication 99.9 1.1E-20 3.8E-25 168.3 18.8 216 47-266 98-333 (440)
34 4b4t_I 26S protease regulatory 99.9 7.8E-20 2.7E-24 158.4 22.7 202 45-262 174-420 (437)
35 3h4m_A Proteasome-activating n 99.9 4.1E-20 1.4E-24 156.1 20.2 205 48-263 12-256 (285)
36 1xwi_A SKD1 protein; VPS4B, AA 99.9 3.9E-19 1.3E-23 152.2 26.3 189 46-247 5-227 (322)
37 2qz4_A Paraplegin; AAA+, SPG7, 99.9 9.8E-20 3.4E-24 151.8 21.9 186 50-249 3-228 (262)
38 4b4t_L 26S protease subunit RP 99.9 1E-19 3.5E-24 159.7 22.9 199 49-262 177-419 (437)
39 4b4t_M 26S protease regulatory 99.9 4.4E-20 1.5E-24 161.9 20.4 202 48-264 176-421 (434)
40 1ofh_A ATP-dependent HSL prote 99.9 1.7E-20 5.7E-25 160.3 16.8 208 53-265 15-299 (310)
41 4b4t_H 26S protease regulatory 99.8 1.5E-19 5.2E-24 158.1 21.8 198 50-262 206-447 (467)
42 3te6_A Regulatory protein SIR3 99.8 2E-19 6.8E-24 151.9 21.5 201 43-250 12-286 (318)
43 1l8q_A Chromosomal replication 99.8 2.8E-20 9.7E-25 159.9 16.6 203 51-262 9-237 (324)
44 2qby_A CDC6 homolog 1, cell di 99.8 1.3E-20 4.6E-25 165.6 14.6 214 42-265 12-272 (386)
45 2zan_A Vacuolar protein sortin 99.8 1.2E-19 4E-24 162.1 19.5 193 43-248 124-350 (444)
46 4b4t_K 26S protease regulatory 99.8 3.4E-19 1.2E-23 156.2 21.6 198 50-262 169-411 (428)
47 2r44_A Uncharacterized protein 99.8 4.4E-20 1.5E-24 159.2 15.7 212 42-263 16-295 (331)
48 2ce7_A Cell division protein F 99.8 1.3E-18 4.6E-23 154.9 20.9 201 48-263 11-254 (476)
49 1g8p_A Magnesium-chelatase 38 99.8 9.1E-19 3.1E-23 152.1 17.8 216 46-263 17-320 (350)
50 3cf0_A Transitional endoplasmi 99.8 1.9E-18 6.6E-23 146.7 17.8 188 46-248 8-234 (301)
51 3pxg_A Negative regulator of g 99.8 9.3E-19 3.2E-23 157.2 15.7 194 40-248 167-383 (468)
52 4fcw_A Chaperone protein CLPB; 99.8 1.2E-18 4E-23 148.9 14.9 194 53-248 17-276 (311)
53 1qvr_A CLPB protein; coiled co 99.8 1.2E-18 4.1E-23 167.5 13.8 202 41-248 158-390 (854)
54 1ojl_A Transcriptional regulat 99.8 2.8E-17 9.7E-22 139.4 20.6 203 53-261 2-248 (304)
55 2bjv_A PSP operon transcriptio 99.8 1.1E-17 3.8E-22 139.6 16.9 204 51-258 4-250 (265)
56 1jbk_A CLPB protein; beta barr 99.8 4.6E-19 1.6E-23 140.5 8.1 163 41-209 10-194 (195)
57 1d2n_A N-ethylmaleimide-sensit 99.8 6.2E-18 2.1E-22 141.6 14.6 181 53-252 33-251 (272)
58 3hu3_A Transitional endoplasmi 99.8 2.9E-17 1E-21 147.5 18.2 189 45-248 196-420 (489)
59 2r62_A Cell division protease 99.8 9.3E-20 3.2E-24 152.5 1.5 205 46-265 4-253 (268)
60 3m6a_A ATP-dependent protease 99.8 1.4E-17 4.9E-22 151.9 15.4 203 52-265 80-341 (543)
61 1r6b_X CLPA protein; AAA+, N-t 99.7 3.1E-17 1.1E-21 156.2 17.2 217 39-262 172-430 (758)
62 3pxi_A Negative regulator of g 99.7 2.4E-17 8.4E-22 156.8 16.0 194 40-248 167-383 (758)
63 1ixz_A ATP-dependent metallopr 99.7 1.5E-16 5.1E-21 131.8 17.8 206 45-262 8-253 (254)
64 2dhr_A FTSH; AAA+ protein, hex 99.7 4.7E-17 1.6E-21 145.9 15.0 203 48-262 26-268 (499)
65 2p65_A Hypothetical protein PF 99.7 3.7E-18 1.3E-22 134.5 6.9 156 40-201 9-187 (187)
66 1um8_A ATP-dependent CLP prote 99.7 9E-17 3.1E-21 140.8 15.5 204 54-263 22-363 (376)
67 1w5s_A Origin recognition comp 99.7 4E-16 1.4E-20 138.3 19.6 217 43-262 15-290 (412)
68 1iy2_A ATP-dependent metallopr 99.7 9.7E-16 3.3E-20 128.7 20.0 203 48-262 35-277 (278)
69 3pxi_A Negative regulator of g 99.7 1E-16 3.4E-21 152.6 15.2 185 53-247 491-721 (758)
70 3k1j_A LON protease, ATP-depen 99.7 1.8E-16 6.3E-21 146.8 16.2 218 44-263 32-373 (604)
71 1r6b_X CLPA protein; AAA+, N-t 99.7 3.1E-16 1.1E-20 149.4 17.6 184 52-248 457-713 (758)
72 3cf2_A TER ATPase, transitiona 99.7 2.5E-16 8.5E-21 147.8 15.3 179 48-237 199-408 (806)
73 3nbx_X ATPase RAVA; AAA+ ATPas 99.7 2.4E-15 8.3E-20 135.0 19.1 204 53-263 22-283 (500)
74 1qvr_A CLPB protein; coiled co 99.7 4.2E-16 1.4E-20 149.9 11.7 186 53-248 558-817 (854)
75 3hws_A ATP-dependent CLP prote 99.6 8.8E-16 3E-20 133.9 10.3 189 54-248 16-320 (363)
76 2x8a_A Nuclear valosin-contain 99.6 5.6E-14 1.9E-18 117.3 19.0 173 49-231 6-211 (274)
77 3cf2_A TER ATPase, transitiona 99.6 4.9E-16 1.7E-20 145.8 7.3 178 49-241 473-692 (806)
78 3t15_A Ribulose bisphosphate c 99.6 2.7E-14 9.2E-19 120.6 17.2 148 76-236 38-220 (293)
79 3n70_A Transport activator; si 99.6 7E-15 2.4E-19 111.0 11.2 132 54-200 2-144 (145)
80 2qen_A Walker-type ATPase; unk 99.6 1.7E-13 5.8E-18 118.6 19.8 185 51-245 10-248 (350)
81 1g41_A Heat shock protein HSLU 99.6 1.6E-13 5.6E-18 120.6 17.5 132 141-272 250-441 (444)
82 3co5_A Putative two-component 99.5 1.7E-14 5.9E-19 108.5 8.9 128 54-200 5-142 (143)
83 3f9v_A Minichromosome maintena 99.5 8.5E-15 2.9E-19 134.8 7.1 208 52-262 294-584 (595)
84 2fna_A Conserved hypothetical 99.5 1.3E-12 4.6E-17 113.2 18.6 184 51-246 11-253 (357)
85 1ypw_A Transitional endoplasmi 99.5 2.6E-13 8.9E-18 129.2 13.6 185 46-241 197-412 (806)
86 3dzd_A Transcriptional regulat 99.5 2E-12 6.7E-17 112.4 15.9 194 53-250 129-361 (368)
87 1ny5_A Transcriptional regulat 99.4 7.5E-12 2.6E-16 109.6 17.9 206 52-260 136-382 (387)
88 3ec2_A DNA replication protein 99.4 4.5E-13 1.6E-17 104.8 7.5 131 45-183 2-145 (180)
89 1ypw_A Transitional endoplasmi 99.4 5E-15 1.7E-19 140.9 -5.7 156 47-216 471-664 (806)
90 1tue_A Replication protein E1; 99.2 1.1E-10 3.9E-15 91.1 10.7 136 59-216 42-208 (212)
91 2kjq_A DNAA-related protein; s 99.2 3.8E-11 1.3E-15 90.6 7.4 99 73-192 35-139 (149)
92 1u0j_A DNA replication protein 99.2 5.7E-10 1.9E-14 91.3 14.6 138 60-222 88-259 (267)
93 3f8t_A Predicted ATPase involv 99.2 2.6E-10 9E-15 99.9 13.2 166 55-232 215-427 (506)
94 2w58_A DNAI, primosome compone 99.2 1.4E-10 5E-15 92.2 9.5 131 43-181 15-159 (202)
95 3upu_A ATP-dependent DNA helic 99.1 7.9E-11 2.7E-15 105.6 8.7 140 36-181 7-165 (459)
96 4akg_A Glutathione S-transfera 99.1 2.1E-09 7.2E-14 112.3 18.0 175 36-216 1220-1434(2695)
97 2qgz_A Helicase loader, putati 99.1 1.5E-10 5.1E-15 98.1 7.5 130 44-181 115-258 (308)
98 1z6t_A APAF-1, apoptotic prote 99.1 1.4E-09 4.7E-14 100.8 13.9 185 49-247 120-332 (591)
99 4akg_A Glutathione S-transfera 99.0 5.5E-08 1.9E-12 101.9 21.4 169 59-247 632-837 (2695)
100 2a5y_B CED-4; apoptosis; HET: 98.9 1.4E-08 4.7E-13 93.1 14.6 177 56-242 131-336 (549)
101 3sfz_A APAF-1, apoptotic pepti 98.8 1.1E-07 3.9E-12 95.2 18.7 189 48-247 119-332 (1249)
102 3vkg_A Dynein heavy chain, cyt 98.8 4.1E-07 1.4E-11 96.2 20.8 207 36-248 1257-1525(3245)
103 1vt4_I APAF-1 related killer D 98.7 6.8E-07 2.3E-11 85.8 17.7 172 55-245 130-336 (1221)
104 1ye8_A Protein THEP1, hypothet 98.7 2E-07 7E-12 72.2 11.7 68 141-210 99-173 (178)
105 2orw_A Thymidine kinase; TMTK, 98.6 1E-07 3.4E-12 74.4 7.1 114 76-198 5-137 (184)
106 3vkg_A Dynein heavy chain, cyt 98.6 4.8E-06 1.7E-10 88.3 20.5 169 59-247 591-797 (3245)
107 2r2a_A Uncharacterized protein 98.5 1.5E-07 5.1E-12 74.2 6.4 60 141-200 87-153 (199)
108 2r8r_A Sensor protein; KDPD, P 98.3 6.1E-06 2.1E-10 65.6 11.7 132 76-210 8-174 (228)
109 2vhj_A Ntpase P4, P4; non- hyd 98.3 3.2E-06 1.1E-10 70.9 10.1 66 77-155 126-196 (331)
110 2b8t_A Thymidine kinase; deoxy 98.3 5.4E-06 1.8E-10 66.3 9.9 93 76-179 14-124 (223)
111 1g5t_A COB(I)alamin adenosyltr 98.2 7.5E-06 2.6E-10 63.7 8.2 104 75-182 29-164 (196)
112 3e1s_A Exodeoxyribonuclease V, 98.1 4.9E-06 1.7E-10 76.3 7.1 114 59-181 192-316 (574)
113 2j9r_A Thymidine kinase; TK1, 98.0 1.3E-05 4.6E-10 63.1 7.5 101 77-180 31-137 (214)
114 1xx6_A Thymidine kinase; NESG, 98.0 8.8E-06 3E-10 63.5 5.3 96 76-180 10-117 (191)
115 3cmu_A Protein RECA, recombina 97.9 3.4E-05 1.2E-09 79.0 10.2 36 74-109 1427-1462(2050)
116 2orv_A Thymidine kinase; TP4A 97.8 0.00017 5.8E-09 57.4 10.3 99 77-180 22-125 (234)
117 2w0m_A SSO2452; RECA, SSPF, un 97.8 0.00014 4.9E-09 58.3 10.3 25 75-99 24-48 (235)
118 2cvh_A DNA repair and recombin 97.8 0.00044 1.5E-08 54.9 12.9 21 76-96 22-42 (220)
119 2fz4_A DNA repair protein RAD2 97.8 0.00012 3.9E-09 59.4 9.4 38 58-98 95-132 (237)
120 1w36_D RECD, exodeoxyribonucle 97.8 0.00017 5.7E-09 66.8 11.3 103 75-181 165-299 (608)
121 2i3b_A HCR-ntpase, human cance 97.8 0.00022 7.4E-09 55.6 10.3 70 140-211 104-182 (189)
122 3kl4_A SRP54, signal recogniti 97.7 0.00032 1.1E-08 61.6 12.0 36 77-112 100-135 (433)
123 3crm_A TRNA delta(2)-isopenten 97.7 8.5E-05 2.9E-09 62.6 7.6 32 76-112 7-38 (323)
124 3dm5_A SRP54, signal recogniti 97.7 0.00075 2.6E-08 59.4 13.8 35 76-110 102-136 (443)
125 3a4m_A L-seryl-tRNA(SEC) kinas 97.7 0.00031 1.1E-08 57.7 10.5 26 74-99 4-29 (260)
126 1ly1_A Polynucleotide kinase; 97.7 0.00019 6.6E-09 55.1 8.5 22 76-97 4-25 (181)
127 1n0w_A DNA repair protein RAD5 97.6 0.00023 8E-09 57.5 9.2 23 76-98 26-48 (243)
128 1w4r_A Thymidine kinase; type 97.6 0.00025 8.6E-09 55.0 8.6 96 76-178 22-124 (195)
129 2zr9_A Protein RECA, recombina 97.6 0.00018 6.3E-09 61.6 8.7 33 76-108 63-95 (349)
130 3exa_A TRNA delta(2)-isopenten 97.6 9E-05 3.1E-09 61.9 6.4 154 76-253 5-176 (322)
131 1u94_A RECA protein, recombina 97.6 0.00024 8.4E-09 61.0 9.2 33 76-108 65-97 (356)
132 1xp8_A RECA protein, recombina 97.6 0.00059 2E-08 58.8 11.6 33 76-108 76-108 (366)
133 3hr8_A Protein RECA; alpha and 97.6 0.00049 1.7E-08 59.0 10.9 26 77-102 64-89 (356)
134 3dl0_A Adenylate kinase; phosp 97.6 0.002 6.9E-08 51.0 14.0 23 76-98 2-24 (216)
135 2eyu_A Twitching motility prot 97.6 0.00026 8.9E-09 58.1 8.8 25 75-99 26-50 (261)
136 2ze6_A Isopentenyl transferase 97.6 0.0016 5.5E-08 53.1 13.3 23 76-98 3-25 (253)
137 4gp7_A Metallophosphoesterase; 97.6 0.0002 6.8E-09 54.8 7.3 18 76-93 11-28 (171)
138 3llm_A ATP-dependent RNA helic 97.6 0.00055 1.9E-08 55.2 10.2 22 75-96 77-98 (235)
139 3io5_A Recombination and repai 97.6 0.0013 4.5E-08 55.0 12.5 25 76-100 30-54 (333)
140 3e2i_A Thymidine kinase; Zn-bi 97.6 8.2E-05 2.8E-09 58.6 4.9 100 76-178 30-135 (219)
141 3jvv_A Twitching mobility prot 97.5 0.0011 3.9E-08 56.8 12.2 26 75-100 124-149 (356)
142 3lw7_A Adenylate kinase relate 97.5 0.00026 8.8E-09 54.0 7.4 22 76-98 3-24 (179)
143 3zvl_A Bifunctional polynucleo 97.5 0.00031 1.1E-08 61.8 8.7 24 75-98 259-282 (416)
144 3fb4_A Adenylate kinase; psych 97.5 0.0021 7.3E-08 50.9 12.6 23 76-98 2-24 (216)
145 1svm_A Large T antigen; AAA+ f 97.5 0.00042 1.4E-08 59.9 8.9 24 75-98 170-193 (377)
146 1v5w_A DMC1, meiotic recombina 97.4 0.0018 6.2E-08 55.4 12.0 22 77-98 125-146 (343)
147 3cmu_A Protein RECA, recombina 97.4 0.00051 1.7E-08 70.7 9.7 99 75-181 1082-1217(2050)
148 1qhx_A CPT, protein (chloramph 97.4 0.00018 6.1E-09 55.3 5.2 24 75-98 4-27 (178)
149 3sr0_A Adenylate kinase; phosp 97.4 0.0014 4.9E-08 51.6 10.4 23 76-98 2-24 (206)
150 3cmw_A Protein RECA, recombina 97.4 0.0004 1.4E-08 70.5 8.8 26 77-102 1085-1110(1706)
151 3bh0_A DNAB-like replicative h 97.4 0.0042 1.4E-07 52.4 14.0 26 77-102 71-96 (315)
152 3tlx_A Adenylate kinase 2; str 97.4 0.0026 9E-08 51.5 12.3 25 74-98 29-53 (243)
153 2dr3_A UPF0273 protein PH0284; 97.4 0.0017 5.8E-08 52.5 11.2 24 76-99 25-48 (247)
154 2ehv_A Hypothetical protein PH 97.4 0.00049 1.7E-08 55.8 7.8 22 75-96 31-52 (251)
155 2pt7_A CAG-ALFA; ATPase, prote 97.4 0.00059 2E-08 58.0 8.4 37 61-99 160-196 (330)
156 3b6e_A Interferon-induced heli 97.4 0.00074 2.5E-08 53.4 8.6 38 58-98 35-72 (216)
157 4a74_A DNA repair and recombin 97.4 0.0015 5.2E-08 52.1 10.5 22 77-98 28-49 (231)
158 3tif_A Uncharacterized ABC tra 97.4 0.0006 2E-08 55.0 8.0 43 140-182 162-207 (235)
159 3trf_A Shikimate kinase, SK; a 97.4 0.00019 6.6E-09 55.5 5.0 25 74-98 5-29 (185)
160 3kb2_A SPBC2 prophage-derived 97.4 0.00017 5.8E-09 55.0 4.5 24 75-98 2-25 (173)
161 1nrj_B SR-beta, signal recogni 97.3 0.0011 3.7E-08 52.6 9.3 105 73-184 11-133 (218)
162 2z0h_A DTMP kinase, thymidylat 97.3 0.0057 2E-07 47.4 13.4 27 77-103 3-29 (197)
163 3foz_A TRNA delta(2)-isopenten 97.3 0.00019 6.7E-09 59.8 4.9 23 76-98 12-34 (316)
164 3gfo_A Cobalt import ATP-bindi 97.3 0.00022 7.6E-09 59.0 5.2 52 140-192 160-214 (275)
165 1t6n_A Probable ATP-dependent 97.3 0.0044 1.5E-07 49.1 12.7 39 141-179 158-198 (220)
166 1nks_A Adenylate kinase; therm 97.3 0.00016 5.3E-09 56.3 3.9 28 76-103 3-30 (194)
167 3vaa_A Shikimate kinase, SK; s 97.3 0.00029 9.7E-09 55.3 5.1 25 74-98 25-49 (199)
168 2iut_A DNA translocase FTSK; n 97.3 0.012 4.2E-07 53.3 16.1 69 142-210 344-420 (574)
169 2ius_A DNA translocase FTSK; n 97.3 0.0037 1.3E-07 56.1 12.6 69 143-211 299-375 (512)
170 1kht_A Adenylate kinase; phosp 97.3 0.00033 1.1E-08 54.3 5.2 27 75-101 4-30 (192)
171 1cr0_A DNA primase/helicase; R 97.3 0.0027 9.2E-08 53.0 11.1 25 76-100 37-61 (296)
172 4b3f_X DNA-binding protein smu 97.2 0.00063 2.1E-08 63.5 7.8 63 58-125 191-253 (646)
173 1via_A Shikimate kinase; struc 97.2 0.00029 1E-08 54.0 4.7 24 75-98 5-28 (175)
174 1qde_A EIF4A, translation init 97.2 0.0019 6.6E-08 51.4 9.8 39 141-179 155-194 (224)
175 1jql_B DNA polymerase III, del 97.2 0.0047 1.6E-07 45.3 11.1 120 69-197 13-139 (140)
176 3iij_A Coilin-interacting nucl 97.2 0.00033 1.1E-08 53.9 5.0 24 75-98 12-35 (180)
177 3h1t_A Type I site-specific re 97.2 0.00091 3.1E-08 61.7 8.6 43 58-101 183-225 (590)
178 1vec_A ATP-dependent RNA helic 97.2 0.0027 9.3E-08 49.7 10.3 38 141-178 146-184 (206)
179 2ga8_A Hypothetical 39.9 kDa p 97.2 0.00034 1.2E-08 59.5 5.1 38 62-99 12-49 (359)
180 2yvu_A Probable adenylyl-sulfa 97.2 0.00024 8.1E-09 55.1 3.8 29 75-103 14-42 (186)
181 1zuh_A Shikimate kinase; alpha 97.2 0.00037 1.3E-08 53.0 4.9 26 73-98 6-31 (168)
182 3rlf_A Maltose/maltodextrin im 97.2 0.0012 4.2E-08 56.9 8.5 43 141-183 151-196 (381)
183 1pzn_A RAD51, DNA repair and r 97.2 0.0048 1.7E-07 52.8 12.3 22 77-98 134-155 (349)
184 2r6a_A DNAB helicase, replicat 97.2 0.0064 2.2E-07 54.1 13.4 24 76-99 205-228 (454)
185 3nh6_A ATP-binding cassette SU 97.2 0.00094 3.2E-08 56.0 7.6 43 141-183 208-251 (306)
186 1v43_A Sugar-binding transport 97.2 0.0025 8.7E-08 54.9 10.2 44 140-183 158-204 (372)
187 3llu_A RAS-related GTP-binding 97.2 0.0092 3.1E-07 46.3 12.7 100 76-184 22-142 (196)
188 3lda_A DNA repair protein RAD5 97.2 0.0048 1.6E-07 53.8 11.9 23 76-98 180-202 (400)
189 2iyv_A Shikimate kinase, SK; t 97.1 0.0003 1E-08 54.4 3.9 24 75-98 3-26 (184)
190 2it1_A 362AA long hypothetical 97.1 0.0022 7.4E-08 55.1 9.5 44 140-183 150-196 (362)
191 1kao_A RAP2A; GTP-binding prot 97.1 0.018 6.2E-07 42.8 13.9 23 76-98 5-27 (167)
192 1aky_A Adenylate kinase; ATP:A 97.1 0.00047 1.6E-08 55.0 5.1 25 74-98 4-28 (220)
193 1vma_A Cell division protein F 97.1 0.0027 9.3E-08 53.2 9.9 34 77-110 107-140 (306)
194 4eun_A Thermoresistant glucoki 97.1 0.00035 1.2E-08 54.9 4.2 27 72-98 27-53 (200)
195 2yyz_A Sugar ABC transporter, 97.1 0.0023 7.9E-08 54.9 9.6 44 140-183 150-196 (359)
196 1vpl_A ABC transporter, ATP-bi 97.1 0.0019 6.5E-08 52.7 8.7 43 140-182 163-207 (256)
197 1ltq_A Polynucleotide kinase; 97.1 0.0023 7.9E-08 53.5 9.5 23 76-98 4-26 (301)
198 1kag_A SKI, shikimate kinase I 97.1 0.00039 1.3E-08 53.1 4.3 24 75-98 5-28 (173)
199 2olj_A Amino acid ABC transpor 97.1 0.001 3.6E-08 54.5 7.1 43 140-182 176-220 (263)
200 2ewv_A Twitching motility prot 97.1 0.0012 4.2E-08 57.0 7.9 26 75-100 137-162 (372)
201 1y63_A LMAJ004144AAA protein; 97.1 0.00031 1.1E-08 54.4 3.7 24 74-97 10-33 (184)
202 1gvn_B Zeta; postsegregational 97.1 0.00082 2.8E-08 56.0 6.5 22 77-98 36-57 (287)
203 4g1u_C Hemin import ATP-bindin 97.1 0.00074 2.5E-08 55.5 6.1 43 141-183 165-210 (266)
204 1z47_A CYSA, putative ABC-tran 97.1 0.0019 6.4E-08 55.3 8.5 44 140-183 162-208 (355)
205 2ff7_A Alpha-hemolysin translo 97.1 0.0022 7.6E-08 52.1 8.6 44 140-183 162-206 (247)
206 2rhm_A Putative kinase; P-loop 97.1 0.00045 1.5E-08 53.7 4.3 23 76-98 7-29 (193)
207 3t61_A Gluconokinase; PSI-biol 97.1 0.00062 2.1E-08 53.5 5.1 24 75-98 19-42 (202)
208 1hv8_A Putative ATP-dependent 97.1 0.0035 1.2E-07 53.7 10.3 38 141-178 147-185 (367)
209 3c8u_A Fructokinase; YP_612366 97.1 0.00068 2.3E-08 53.6 5.3 40 60-99 6-47 (208)
210 1e6c_A Shikimate kinase; phosp 97.1 0.00061 2.1E-08 51.9 4.9 24 75-98 3-26 (173)
211 2nq2_C Hypothetical ABC transp 97.1 0.0058 2E-07 49.8 10.8 44 140-183 145-191 (253)
212 1rz3_A Hypothetical protein rb 97.0 0.00078 2.7E-08 52.9 5.4 43 60-102 5-50 (201)
213 1z0j_A RAB-22, RAS-related pro 97.0 0.0038 1.3E-07 46.9 9.1 23 76-98 8-30 (170)
214 2cdn_A Adenylate kinase; phosp 97.0 0.00077 2.6E-08 52.9 5.3 23 76-98 22-44 (201)
215 3d31_A Sulfate/molybdate ABC t 97.0 0.00087 3E-08 57.3 5.9 44 140-183 144-190 (348)
216 1xjc_A MOBB protein homolog; s 97.0 0.00062 2.1E-08 51.7 4.5 37 74-110 4-40 (169)
217 2c95_A Adenylate kinase 1; tra 97.0 0.00063 2.2E-08 53.0 4.7 24 75-98 10-33 (196)
218 1wms_A RAB-9, RAB9, RAS-relate 97.0 0.0053 1.8E-07 46.5 9.9 23 76-98 9-31 (177)
219 3uie_A Adenylyl-sulfate kinase 97.0 0.00063 2.1E-08 53.4 4.5 27 73-99 24-50 (200)
220 3pey_A ATP-dependent RNA helic 97.0 0.005 1.7E-07 53.3 10.8 38 141-178 145-184 (395)
221 3vkw_A Replicase large subunit 97.0 0.00062 2.1E-08 59.8 4.7 91 77-179 164-268 (446)
222 1sky_E F1-ATPase, F1-ATP synth 97.0 0.001 3.5E-08 58.8 6.1 37 60-99 140-176 (473)
223 2j37_W Signal recognition part 97.0 0.014 4.6E-07 52.4 13.5 36 76-111 103-138 (504)
224 4dkx_A RAS-related protein RAB 97.0 0.007 2.4E-07 48.0 10.5 22 77-98 16-37 (216)
225 2i1q_A DNA repair and recombin 97.0 0.0034 1.2E-07 53.1 9.2 22 77-98 101-122 (322)
226 2px0_A Flagellar biosynthesis 97.0 0.0031 1E-07 52.7 8.7 37 76-112 107-144 (296)
227 2qor_A Guanylate kinase; phosp 97.0 0.00049 1.7E-08 54.2 3.7 24 75-98 13-36 (204)
228 1ak2_A Adenylate kinase isoenz 97.0 0.00089 3E-08 53.9 5.3 25 74-98 16-40 (233)
229 3fmo_B ATP-dependent RNA helic 97.0 0.0044 1.5E-07 51.9 9.7 38 141-178 235-274 (300)
230 3cm0_A Adenylate kinase; ATP-b 97.0 0.00066 2.3E-08 52.4 4.3 23 76-98 6-28 (186)
231 3bor_A Human initiation factor 97.0 0.0028 9.6E-08 51.0 8.2 39 141-179 173-212 (237)
232 3be4_A Adenylate kinase; malar 97.0 0.00065 2.2E-08 54.0 4.3 25 74-98 5-29 (217)
233 4gzl_A RAS-related C3 botulinu 97.0 0.0028 9.5E-08 49.7 8.0 41 58-98 14-54 (204)
234 3dz8_A RAS-related protein RAB 96.9 0.008 2.7E-07 46.4 10.4 23 76-98 25-47 (191)
235 2wwf_A Thymidilate kinase, put 96.9 0.00069 2.4E-08 53.5 4.3 31 75-105 11-41 (212)
236 2p5t_B PEZT; postsegregational 96.9 0.00063 2.1E-08 55.6 4.1 23 76-98 34-56 (253)
237 2ce2_X GTPase HRAS; signaling 96.9 0.0052 1.8E-07 45.8 9.1 23 76-98 5-27 (166)
238 1nn5_A Similar to deoxythymidy 96.9 0.00073 2.5E-08 53.4 4.4 30 75-104 10-39 (215)
239 2vli_A Antibiotic resistance p 96.9 0.00048 1.6E-08 53.1 3.2 24 75-98 6-29 (183)
240 1zd8_A GTP:AMP phosphotransfer 96.9 0.0007 2.4E-08 54.3 4.2 24 75-98 8-31 (227)
241 2gxq_A Heat resistant RNA depe 96.9 0.0051 1.7E-07 48.1 9.2 39 141-179 144-183 (207)
242 3tui_C Methionine import ATP-b 96.9 0.0039 1.3E-07 53.4 9.0 44 140-183 180-226 (366)
243 1zak_A Adenylate kinase; ATP:A 96.9 0.00057 1.9E-08 54.6 3.6 25 74-98 5-29 (222)
244 2ged_A SR-beta, signal recogni 96.9 0.027 9.3E-07 43.3 13.3 24 75-98 49-72 (193)
245 1ex7_A Guanylate kinase; subst 96.9 0.00058 2E-08 52.9 3.5 22 77-98 4-25 (186)
246 3umf_A Adenylate kinase; rossm 96.9 0.00086 2.9E-08 53.3 4.5 23 76-98 31-53 (217)
247 1u8z_A RAS-related protein RAL 96.9 0.0077 2.6E-07 45.0 9.8 23 76-98 6-28 (168)
248 1tev_A UMP-CMP kinase; ploop, 96.9 0.0009 3.1E-08 52.0 4.5 23 76-98 5-27 (196)
249 1kgd_A CASK, peripheral plasma 96.9 0.00078 2.7E-08 51.9 4.1 23 76-98 7-29 (180)
250 1q0u_A Bstdead; DEAD protein, 96.9 0.0081 2.8E-07 47.6 10.2 43 141-183 150-194 (219)
251 2bwj_A Adenylate kinase 5; pho 96.9 0.00092 3.2E-08 52.2 4.5 24 75-98 13-36 (199)
252 1z0f_A RAB14, member RAS oncog 96.9 0.0067 2.3E-07 46.0 9.3 23 76-98 17-39 (179)
253 1rif_A DAR protein, DNA helica 96.9 0.0093 3.2E-07 49.3 10.8 38 58-98 115-152 (282)
254 1ukz_A Uridylate kinase; trans 96.9 0.0009 3.1E-08 52.5 4.4 24 75-98 16-39 (203)
255 2pt5_A Shikimate kinase, SK; a 96.9 0.001 3.5E-08 50.4 4.6 23 76-98 2-24 (168)
256 1knq_A Gluconate kinase; ALFA/ 96.9 0.00076 2.6E-08 51.6 3.8 23 76-98 10-32 (175)
257 3lxw_A GTPase IMAP family memb 96.8 0.13 4.6E-06 41.4 17.5 22 76-97 23-44 (247)
258 2v3c_C SRP54, signal recogniti 96.8 0.0015 5.1E-08 57.6 6.0 35 76-110 101-135 (432)
259 2plr_A DTMP kinase, probable t 96.8 0.00072 2.5E-08 53.3 3.6 25 76-100 6-30 (213)
260 3tkl_A RAS-related protein RAB 96.8 0.01 3.5E-07 45.8 10.3 23 76-98 18-40 (196)
261 3cmw_A Protein RECA, recombina 96.8 0.0036 1.2E-07 63.8 9.2 29 75-103 35-63 (1706)
262 3tw8_B RAS-related protein RAB 96.8 0.0069 2.4E-07 46.0 9.1 22 76-97 11-32 (181)
263 1p9r_A General secretion pathw 96.8 0.0028 9.4E-08 55.6 7.5 50 51-101 145-194 (418)
264 1np6_A Molybdopterin-guanine d 96.8 0.0016 5.5E-08 49.8 5.2 38 74-111 6-43 (174)
265 2xau_A PRE-mRNA-splicing facto 96.8 0.011 3.6E-07 56.3 11.9 23 75-97 110-132 (773)
266 3fht_A ATP-dependent RNA helic 96.8 0.0097 3.3E-07 51.8 11.0 38 141-178 168-207 (412)
267 2dyk_A GTP-binding protein; GT 96.8 0.01 3.6E-07 44.0 9.8 23 75-97 2-24 (161)
268 2jaq_A Deoxyguanosine kinase; 96.8 0.00081 2.8E-08 52.7 3.6 23 76-98 2-24 (205)
269 3tau_A Guanylate kinase, GMP k 96.8 0.00096 3.3E-08 52.7 4.1 24 75-98 9-32 (208)
270 2bov_A RAla, RAS-related prote 96.8 0.012 4E-07 45.9 10.4 23 76-98 16-38 (206)
271 3ber_A Probable ATP-dependent 96.8 0.0056 1.9E-07 49.7 8.7 38 141-178 186-224 (249)
272 3bc1_A RAS-related protein RAB 96.8 0.0054 1.8E-07 47.2 8.3 23 76-98 13-35 (195)
273 1ek0_A Protein (GTP-binding pr 96.8 0.0082 2.8E-07 45.0 9.1 23 76-98 5-27 (170)
274 2a9k_A RAS-related protein RAL 96.8 0.011 3.8E-07 45.1 10.0 23 76-98 20-42 (187)
275 4a1f_A DNAB helicase, replicat 96.8 0.0044 1.5E-07 52.7 8.1 32 77-108 49-80 (338)
276 1qf9_A UMP/CMP kinase, protein 96.8 0.0011 3.7E-08 51.4 4.1 23 76-98 8-30 (194)
277 3c5c_A RAS-like protein 12; GD 96.8 0.013 4.6E-07 45.0 10.4 22 77-98 24-45 (187)
278 1zp6_A Hypothetical protein AT 96.8 0.00065 2.2E-08 52.7 2.8 22 76-97 11-32 (191)
279 1r2q_A RAS-related protein RAB 96.8 0.0087 3E-07 44.8 9.1 21 77-97 9-29 (170)
280 2bbw_A Adenylate kinase 4, AK4 96.8 0.0011 3.8E-08 53.8 4.2 25 74-98 27-51 (246)
281 1ls1_A Signal recognition part 96.7 0.01 3.4E-07 49.5 10.1 33 77-109 101-133 (295)
282 3ld9_A DTMP kinase, thymidylat 96.7 0.0021 7.3E-08 51.2 5.7 41 67-107 14-55 (223)
283 3clv_A RAB5 protein, putative; 96.7 0.0065 2.2E-07 47.1 8.5 23 76-98 9-31 (208)
284 2il1_A RAB12; G-protein, GDP, 96.7 0.0078 2.7E-07 46.5 8.8 21 77-97 29-49 (192)
285 2wsm_A Hydrogenase expression/ 96.7 0.0014 4.8E-08 52.0 4.6 44 56-99 12-55 (221)
286 1z2a_A RAS-related protein RAB 96.7 0.0037 1.2E-07 46.9 6.7 23 76-98 7-29 (168)
287 1c1y_A RAS-related protein RAP 96.7 0.011 3.9E-07 44.1 9.5 23 76-98 5-27 (167)
288 1e4v_A Adenylate kinase; trans 96.7 0.0012 4.3E-08 52.2 4.1 23 76-98 2-24 (214)
289 2xb4_A Adenylate kinase; ATP-b 96.7 0.0015 5E-08 52.3 4.5 23 76-98 2-24 (223)
290 2efe_B Small GTP-binding prote 96.7 0.008 2.7E-07 45.7 8.6 22 77-98 15-36 (181)
291 3q85_A GTP-binding protein REM 96.7 0.012 4E-07 44.2 9.4 21 76-96 4-24 (169)
292 2oxc_A Probable ATP-dependent 96.7 0.0093 3.2E-07 47.7 9.3 38 141-178 166-205 (230)
293 3t1o_A Gliding protein MGLA; G 96.7 0.0052 1.8E-07 47.4 7.6 22 77-98 17-38 (198)
294 3ney_A 55 kDa erythrocyte memb 96.7 0.0013 4.6E-08 51.2 4.0 24 75-98 20-43 (197)
295 1odf_A YGR205W, hypothetical 3 96.7 0.0027 9.1E-08 52.9 6.0 24 77-100 34-57 (290)
296 2hf9_A Probable hydrogenase ni 96.7 0.0031 1.1E-07 50.2 6.3 42 59-100 23-64 (226)
297 2pbr_A DTMP kinase, thymidylat 96.7 0.0012 4E-08 51.3 3.6 25 76-100 2-26 (195)
298 2v54_A DTMP kinase, thymidylat 96.7 0.0011 3.6E-08 52.1 3.3 24 75-98 5-28 (204)
299 3tr0_A Guanylate kinase, GMP k 96.7 0.0014 4.9E-08 51.4 4.1 24 75-98 8-31 (205)
300 3fho_A ATP-dependent RNA helic 96.7 0.007 2.4E-07 54.7 9.1 38 141-178 259-298 (508)
301 2p5s_A RAS and EF-hand domain 96.6 0.011 3.6E-07 46.0 9.1 24 75-98 29-52 (199)
302 1m7g_A Adenylylsulfate kinase; 96.6 0.0021 7.3E-08 50.8 5.0 26 74-99 25-50 (211)
303 2erx_A GTP-binding protein DI- 96.6 0.0093 3.2E-07 44.8 8.5 22 76-97 5-26 (172)
304 3pqc_A Probable GTP-binding pr 96.6 0.071 2.4E-06 40.8 13.8 23 75-97 24-46 (195)
305 1cke_A CK, MSSA, protein (cyti 96.6 0.0018 6.1E-08 51.7 4.5 24 75-98 6-29 (227)
306 3nwj_A ATSK2; P loop, shikimat 96.6 0.0028 9.7E-08 51.5 5.7 40 59-98 32-72 (250)
307 2bdt_A BH3686; alpha-beta prot 96.6 0.0011 3.9E-08 51.3 3.3 22 77-98 5-26 (189)
308 1lvg_A Guanylate kinase, GMP k 96.6 0.0014 4.8E-08 51.3 3.8 23 76-98 6-28 (198)
309 3p32_A Probable GTPase RV1496/ 96.6 0.0035 1.2E-07 53.9 6.6 39 74-112 79-117 (355)
310 2j41_A Guanylate kinase; GMP, 96.6 0.0015 5.2E-08 51.2 4.0 24 75-98 7-30 (207)
311 3a8t_A Adenylate isopentenyltr 96.6 0.00097 3.3E-08 56.4 2.9 23 76-98 42-64 (339)
312 2fg5_A RAB-22B, RAS-related pr 96.6 0.011 3.9E-07 45.5 8.9 23 76-98 25-47 (192)
313 1m7b_A RND3/RHOE small GTP-bin 96.6 0.003 1E-07 48.5 5.5 22 77-98 10-31 (184)
314 3lv8_A DTMP kinase, thymidylat 96.6 0.0035 1.2E-07 50.4 6.0 29 76-104 29-57 (236)
315 3qf4_A ABC transporter, ATP-bi 96.6 0.0092 3.1E-07 54.9 9.6 43 141-183 497-540 (587)
316 4dsu_A GTPase KRAS, isoform 2B 96.6 0.012 4.1E-07 45.0 8.9 23 76-98 6-28 (189)
317 4a82_A Cystic fibrosis transme 96.6 0.0056 1.9E-07 56.2 8.1 44 141-184 495-539 (578)
318 1ky3_A GTP-binding protein YPT 96.6 0.017 5.8E-07 43.8 9.7 23 76-98 10-32 (182)
319 3a00_A Guanylate kinase, GMP k 96.6 0.0012 4.2E-08 51.0 3.2 24 76-99 3-26 (186)
320 3q3j_B RHO-related GTP-binding 96.6 0.0043 1.5E-07 49.0 6.4 23 76-98 29-51 (214)
321 3r20_A Cytidylate kinase; stru 96.6 0.0025 8.7E-08 51.1 5.0 24 75-98 10-33 (233)
322 4edh_A DTMP kinase, thymidylat 96.6 0.0044 1.5E-07 49.1 6.3 30 76-105 8-37 (213)
323 3con_A GTPase NRAS; structural 96.6 0.0069 2.4E-07 46.6 7.4 23 76-98 23-45 (190)
324 3ice_A Transcription terminati 96.6 0.005 1.7E-07 52.9 6.9 41 64-104 164-204 (422)
325 2fn4_A P23, RAS-related protei 96.6 0.014 4.9E-07 44.2 9.1 23 76-98 11-33 (181)
326 2hup_A RAS-related protein RAB 96.6 0.011 3.8E-07 46.0 8.6 23 76-98 31-53 (201)
327 3fmp_B ATP-dependent RNA helic 96.5 0.017 5.7E-07 51.7 10.8 38 141-178 235-274 (479)
328 1zj6_A ADP-ribosylation factor 96.5 0.01 3.6E-07 45.5 8.3 33 64-97 7-39 (187)
329 4dhe_A Probable GTP-binding pr 96.5 0.028 9.5E-07 44.4 11.0 24 74-97 29-52 (223)
330 1tf7_A KAIC; homohexamer, hexa 96.5 0.0066 2.3E-07 55.1 8.1 26 76-101 283-308 (525)
331 1zbd_A Rabphilin-3A; G protein 96.5 0.01 3.4E-07 46.2 8.2 23 76-98 10-32 (203)
332 3q72_A GTP-binding protein RAD 96.5 0.0044 1.5E-07 46.4 5.8 21 76-96 4-24 (166)
333 3b5x_A Lipid A export ATP-bind 96.5 0.015 5.1E-07 53.5 10.3 43 140-182 497-540 (582)
334 4tmk_A Protein (thymidylate ki 96.5 0.0054 1.8E-07 48.5 6.5 29 75-103 4-32 (213)
335 2f9l_A RAB11B, member RAS onco 96.5 0.0061 2.1E-07 47.5 6.7 22 77-98 8-29 (199)
336 2oap_1 GSPE-2, type II secreti 96.5 0.0063 2.1E-07 54.9 7.5 40 58-99 246-285 (511)
337 2pez_A Bifunctional 3'-phospho 96.5 0.0019 6.5E-08 49.5 3.7 24 76-99 7-30 (179)
338 3iuy_A Probable ATP-dependent 96.5 0.02 6.9E-07 45.5 9.9 38 141-178 167-205 (228)
339 1gwn_A RHO-related GTP-binding 96.5 0.0039 1.3E-07 49.0 5.5 23 76-98 30-52 (205)
340 2xxa_A Signal recognition part 96.5 0.025 8.7E-07 49.8 11.2 37 76-112 102-139 (433)
341 3reg_A RHO-like small GTPase; 96.5 0.013 4.3E-07 45.3 8.4 23 76-98 25-47 (194)
342 1xti_A Probable ATP-dependent 96.5 0.026 9E-07 48.7 11.3 38 141-178 152-191 (391)
343 1gtv_A TMK, thymidylate kinase 96.5 0.00068 2.3E-08 53.6 1.0 25 77-101 3-27 (214)
344 3qf4_B Uncharacterized ABC tra 96.5 0.0055 1.9E-07 56.5 7.2 43 141-183 509-552 (598)
345 1r8s_A ADP-ribosylation factor 96.5 0.056 1.9E-06 40.1 11.8 23 76-98 2-24 (164)
346 1z06_A RAS-related protein RAB 96.5 0.013 4.6E-07 44.9 8.5 23 76-98 22-44 (189)
347 3kkq_A RAS-related protein M-R 96.5 0.013 4.6E-07 44.6 8.4 22 77-98 21-42 (183)
348 3ctd_A Putative ATPase, AAA fa 96.5 0.005 1.7E-07 47.6 5.7 44 264-308 33-76 (213)
349 1s2m_A Putative ATP-dependent 96.4 0.033 1.1E-06 48.3 11.8 23 75-97 59-81 (400)
350 1j8m_F SRP54, signal recogniti 96.4 0.056 1.9E-06 45.0 12.6 36 76-111 100-135 (297)
351 1svi_A GTP-binding protein YSX 96.4 0.04 1.4E-06 42.3 11.2 24 74-97 23-46 (195)
352 2pl3_A Probable ATP-dependent 96.4 0.016 5.5E-07 46.4 9.1 38 141-178 171-209 (236)
353 3d3q_A TRNA delta(2)-isopenten 96.4 0.0021 7.2E-08 54.5 3.9 23 76-98 9-31 (340)
354 3ly5_A ATP-dependent RNA helic 96.4 0.011 3.7E-07 48.4 8.1 38 141-178 201-239 (262)
355 3dkp_A Probable ATP-dependent 96.4 0.027 9.3E-07 45.3 10.5 24 75-98 67-91 (245)
356 3j16_B RLI1P; ribosome recycli 96.4 0.017 5.9E-07 53.1 10.2 51 141-192 239-291 (608)
357 3b85_A Phosphate starvation-in 96.4 0.0013 4.4E-08 52.0 2.2 42 46-97 4-45 (208)
358 1rj9_A FTSY, signal recognitio 96.4 0.0034 1.2E-07 52.6 4.9 29 76-104 104-132 (304)
359 1h65_A Chloroplast outer envel 96.4 0.057 1.9E-06 44.2 12.3 23 76-98 41-63 (270)
360 3ihw_A Centg3; RAS, centaurin, 96.4 0.014 4.7E-07 44.8 8.1 22 77-98 23-44 (184)
361 3eiq_A Eukaryotic initiation f 96.4 0.013 4.6E-07 51.0 9.0 38 141-178 183-221 (414)
362 1mh1_A RAC1; GTP-binding, GTPa 96.4 0.004 1.4E-07 47.6 4.9 22 77-98 8-29 (186)
363 2if2_A Dephospho-COA kinase; a 96.4 0.0021 7.1E-08 50.4 3.4 22 76-98 3-24 (204)
364 2atv_A RERG, RAS-like estrogen 96.4 0.022 7.6E-07 44.0 9.3 23 76-98 30-52 (196)
365 3e70_C DPA, signal recognition 96.4 0.0065 2.2E-07 51.5 6.6 34 77-110 132-165 (328)
366 2ew1_A RAS-related protein RAB 96.4 0.0088 3E-07 46.7 7.0 23 76-98 28-50 (201)
367 1s96_A Guanylate kinase, GMP k 96.4 0.0028 9.7E-08 50.4 4.1 24 76-99 18-41 (219)
368 2a5j_A RAS-related protein RAB 96.4 0.022 7.5E-07 43.8 9.2 22 77-98 24-45 (191)
369 3b60_A Lipid A export ATP-bind 96.4 0.012 4.1E-07 54.1 8.8 43 141-183 498-541 (582)
370 2nzj_A GTP-binding protein REM 96.4 0.007 2.4E-07 45.7 6.2 22 76-97 6-27 (175)
371 1wp9_A ATP-dependent RNA helic 96.3 0.03 1E-06 49.6 11.3 37 58-98 11-47 (494)
372 3tqc_A Pantothenate kinase; bi 96.3 0.0084 2.9E-07 50.5 7.1 23 77-99 95-117 (321)
373 4eaq_A DTMP kinase, thymidylat 96.3 0.0032 1.1E-07 50.5 4.4 25 76-100 28-52 (229)
374 2j1l_A RHO-related GTP-binding 96.3 0.0069 2.4E-07 47.8 6.3 22 76-97 36-57 (214)
375 2bme_A RAB4A, RAS-related prot 96.3 0.01 3.4E-07 45.4 7.1 23 76-98 12-34 (186)
376 2fh5_B SR-beta, signal recogni 96.3 0.021 7.3E-07 44.8 9.1 24 75-98 8-31 (214)
377 3ake_A Cytidylate kinase; CMP 96.3 0.0036 1.2E-07 49.1 4.5 23 76-98 4-26 (208)
378 2oil_A CATX-8, RAS-related pro 96.3 0.012 4.2E-07 45.3 7.6 23 76-98 27-49 (193)
379 3ozx_A RNAse L inhibitor; ATP 96.3 0.0096 3.3E-07 54.0 7.8 42 141-182 156-198 (538)
380 2y8e_A RAB-protein 6, GH09086P 96.3 0.016 5.6E-07 43.7 8.2 21 77-97 17-37 (179)
381 3thx_A DNA mismatch repair pro 96.3 0.017 6E-07 55.7 9.9 21 76-96 664-684 (934)
382 3lxx_A GTPase IMAP family memb 96.3 0.023 7.9E-07 45.6 9.4 23 76-98 31-53 (239)
383 3v9p_A DTMP kinase, thymidylat 96.3 0.0051 1.7E-07 49.2 5.3 27 75-101 26-52 (227)
384 2xgj_A ATP-dependent RNA helic 96.3 0.065 2.2E-06 52.5 13.9 62 33-97 61-124 (1010)
385 2g6b_A RAS-related protein RAB 96.3 0.012 4.2E-07 44.6 7.3 22 77-98 13-34 (180)
386 4e22_A Cytidylate kinase; P-lo 96.3 0.0044 1.5E-07 50.5 4.9 24 75-98 28-51 (252)
387 3gj0_A GTP-binding nuclear pro 96.3 0.0053 1.8E-07 48.6 5.4 21 77-97 18-38 (221)
388 1g16_A RAS-related protein SEC 96.3 0.008 2.7E-07 45.1 6.1 22 76-97 5-26 (170)
389 2j0s_A ATP-dependent RNA helic 96.3 0.022 7.5E-07 49.6 9.7 38 141-178 179-217 (410)
390 3asz_A Uridine kinase; cytidin 96.3 0.0025 8.5E-08 50.3 3.3 23 76-98 8-30 (211)
391 2gk6_A Regulator of nonsense t 96.3 0.0098 3.4E-07 55.2 7.7 40 58-100 182-221 (624)
392 3oes_A GTPase rhebl1; small GT 96.3 0.051 1.7E-06 42.1 10.9 23 76-98 26-48 (201)
393 2gf0_A GTP-binding protein DI- 96.3 0.014 4.8E-07 45.1 7.6 23 76-98 10-32 (199)
394 2grj_A Dephospho-COA kinase; T 96.3 0.003 1E-07 49.2 3.6 22 77-98 15-36 (192)
395 1z6g_A Guanylate kinase; struc 96.2 0.0031 1.1E-07 50.2 3.8 23 76-98 25-47 (218)
396 3bwd_D RAC-like GTP-binding pr 96.2 0.0059 2E-07 46.5 5.3 23 75-97 9-31 (182)
397 1x3s_A RAS-related protein RAB 96.2 0.011 3.8E-07 45.5 6.9 23 76-98 17-39 (195)
398 1htw_A HI0065; nucleotide-bind 96.2 0.003 1E-07 47.5 3.4 23 76-98 35-57 (158)
399 2q6t_A DNAB replication FORK h 96.2 0.019 6.4E-07 50.9 9.1 24 77-100 203-226 (444)
400 2v6i_A RNA helicase; membrane, 96.2 0.025 8.4E-07 49.9 9.8 23 75-97 3-26 (431)
401 1zd9_A ADP-ribosylation factor 96.2 0.032 1.1E-06 42.8 9.4 23 76-98 24-46 (188)
402 3t5g_A GTP-binding protein RHE 96.2 0.094 3.2E-06 39.6 12.0 22 76-97 8-29 (181)
403 2iwr_A Centaurin gamma 1; ANK 96.2 0.024 8.1E-07 42.9 8.6 22 77-98 10-31 (178)
404 1znw_A Guanylate kinase, GMP k 96.2 0.0027 9.2E-08 50.0 3.2 24 75-98 21-44 (207)
405 2f7s_A C25KG, RAS-related prot 96.2 0.028 9.6E-07 44.2 9.2 22 76-97 27-48 (217)
406 1vg8_A RAS-related protein RAB 96.2 0.036 1.2E-06 43.1 9.8 23 76-98 10-32 (207)
407 1fuu_A Yeast initiation factor 96.2 0.019 6.6E-07 49.6 8.9 39 141-179 162-201 (394)
408 1jjv_A Dephospho-COA kinase; P 96.2 0.0027 9.3E-08 49.9 3.1 21 76-96 4-24 (206)
409 2qmh_A HPR kinase/phosphorylas 96.2 0.002 6.8E-08 50.0 2.2 23 76-98 36-58 (205)
410 2oca_A DAR protein, ATP-depend 96.2 0.036 1.2E-06 49.9 10.9 38 58-98 115-152 (510)
411 2www_A Methylmalonic aciduria 96.2 0.008 2.7E-07 51.5 6.2 35 75-109 75-109 (349)
412 1pui_A ENGB, probable GTP-bind 96.2 0.037 1.3E-06 43.2 9.7 23 75-97 27-49 (210)
413 2eyq_A TRCF, transcription-rep 96.2 0.066 2.2E-06 53.2 13.3 39 58-96 608-646 (1151)
414 1uj2_A Uridine-cytidine kinase 96.1 0.0033 1.1E-07 51.2 3.4 23 76-98 24-46 (252)
415 2hxs_A RAB-26, RAS-related pro 96.1 0.023 7.8E-07 42.9 8.1 21 77-97 9-29 (178)
416 2atx_A Small GTP binding prote 96.1 0.0059 2E-07 47.2 4.7 23 76-98 20-42 (194)
417 1uf9_A TT1252 protein; P-loop, 96.1 0.0031 1.1E-07 49.2 3.2 23 75-97 9-31 (203)
418 2z43_A DNA repair and recombin 96.1 0.013 4.5E-07 49.5 7.2 24 76-99 109-132 (324)
419 3bgw_A DNAB-like replicative h 96.1 0.014 4.9E-07 51.6 7.6 27 77-103 200-226 (444)
420 1g8f_A Sulfate adenylyltransfe 96.1 0.0069 2.4E-07 54.4 5.5 46 55-100 374-421 (511)
421 3thx_B DNA mismatch repair pro 96.1 0.025 8.7E-07 54.4 9.7 22 76-97 675-696 (918)
422 2fwr_A DNA repair protein RAD2 96.1 0.035 1.2E-06 49.4 10.2 38 58-98 95-132 (472)
423 1yqt_A RNAse L inhibitor; ATP- 96.1 0.02 7E-07 52.0 8.7 51 141-192 176-228 (538)
424 2f1r_A Molybdopterin-guanine d 96.1 0.0026 8.8E-08 48.5 2.3 39 75-113 3-41 (171)
425 2q3h_A RAS homolog gene family 96.1 0.0072 2.5E-07 47.0 5.0 22 76-97 22-43 (201)
426 2yc2_C IFT27, small RAB-relate 96.1 0.0087 3E-07 46.6 5.5 22 76-97 22-43 (208)
427 3cph_A RAS-related protein SEC 96.1 0.015 5.2E-07 45.5 6.9 23 76-98 22-44 (213)
428 1ewq_A DNA mismatch repair pro 96.1 0.012 4.2E-07 55.6 7.3 23 76-98 578-600 (765)
429 1sq5_A Pantothenate kinase; P- 96.0 0.0099 3.4E-07 49.9 5.9 24 76-99 82-105 (308)
430 3eph_A TRNA isopentenyltransfe 96.0 0.0045 1.5E-07 53.6 3.8 23 76-98 4-26 (409)
431 2gco_A H9, RHO-related GTP-bin 96.0 0.0087 3E-07 46.6 5.2 23 76-98 27-49 (201)
432 2zpa_A Uncharacterized protein 96.0 0.03 1E-06 51.7 9.4 81 75-161 193-275 (671)
433 2gf9_A RAS-related protein RAB 96.0 0.01 3.5E-07 45.6 5.6 23 76-98 24-46 (189)
434 3fe2_A Probable ATP-dependent 96.0 0.025 8.7E-07 45.5 8.2 38 141-178 176-214 (242)
435 1q3t_A Cytidylate kinase; nucl 96.0 0.0087 3E-07 48.1 5.2 24 75-98 17-40 (236)
436 3ozx_A RNAse L inhibitor; ATP 96.0 0.017 5.9E-07 52.4 7.7 52 140-192 402-456 (538)
437 2fu5_C RAS-related protein RAB 96.0 0.027 9.4E-07 42.8 7.8 23 76-98 10-32 (183)
438 3b9q_A Chloroplast SRP recepto 95.9 0.0055 1.9E-07 51.3 4.0 26 77-102 103-128 (302)
439 2j0v_A RAC-like GTP-binding pr 95.9 0.0072 2.5E-07 47.5 4.5 23 76-98 11-33 (212)
440 4f4c_A Multidrug resistance pr 95.9 0.0099 3.4E-07 59.9 6.4 44 141-184 1235-1279(1321)
441 2fv8_A H6, RHO-related GTP-bin 95.9 0.031 1.1E-06 43.6 8.2 22 76-97 27-48 (207)
442 3l9o_A ATP-dependent RNA helic 95.9 0.095 3.3E-06 51.8 13.2 38 141-178 290-328 (1108)
443 2wjy_A Regulator of nonsense t 95.9 0.017 5.6E-07 55.1 7.6 40 58-100 358-397 (800)
444 2qt1_A Nicotinamide riboside k 95.9 0.0033 1.1E-07 49.4 2.4 22 77-98 24-45 (207)
445 3cbq_A GTP-binding protein REM 95.9 0.022 7.5E-07 44.2 7.1 19 77-95 26-44 (195)
446 4f4c_A Multidrug resistance pr 95.9 0.022 7.6E-07 57.4 8.7 43 140-182 571-614 (1321)
447 4djt_A GTP-binding nuclear pro 95.9 0.011 3.6E-07 46.7 5.3 20 77-96 14-33 (218)
448 3lnc_A Guanylate kinase, GMP k 95.9 0.0035 1.2E-07 50.3 2.5 23 76-98 29-52 (231)
449 2ffh_A Protein (FFH); SRP54, s 95.9 0.096 3.3E-06 45.9 11.7 34 77-110 101-134 (425)
450 2z0m_A 337AA long hypothetical 95.9 0.033 1.1E-06 46.9 8.7 23 75-97 32-54 (337)
451 1a7j_A Phosphoribulokinase; tr 95.9 0.0026 9E-08 53.0 1.7 25 75-99 6-30 (290)
452 2bcg_Y Protein YP2, GTP-bindin 95.9 0.034 1.2E-06 43.3 8.1 23 76-98 10-32 (206)
453 2gks_A Bifunctional SAT/APS ki 95.8 0.0099 3.4E-07 54.1 5.5 46 57-102 353-400 (546)
454 2h92_A Cytidylate kinase; ross 95.8 0.0087 3E-07 47.4 4.7 23 76-98 5-27 (219)
455 2v9p_A Replication protein E1; 95.8 0.0097 3.3E-07 49.8 5.0 24 75-98 127-150 (305)
456 1bif_A 6-phosphofructo-2-kinas 95.8 0.032 1.1E-06 49.8 8.7 24 76-99 41-64 (469)
457 1vht_A Dephospho-COA kinase; s 95.8 0.0054 1.8E-07 48.6 3.3 21 76-96 6-26 (218)
458 3hjn_A DTMP kinase, thymidylat 95.8 0.0078 2.7E-07 47.0 4.2 29 77-105 3-31 (197)
459 2jeo_A Uridine-cytidine kinase 95.8 0.0061 2.1E-07 49.4 3.6 23 76-98 27-49 (245)
460 1yrb_A ATP(GTP)binding protein 95.8 0.0097 3.3E-07 48.5 4.9 35 77-112 17-51 (262)
461 3dpu_A RAB family protein; roc 95.8 0.049 1.7E-06 49.5 9.9 22 77-98 44-65 (535)
462 3aez_A Pantothenate kinase; tr 95.8 0.0064 2.2E-07 51.2 3.6 24 77-100 93-116 (312)
463 2o52_A RAS-related protein RAB 95.8 0.02 6.8E-07 44.5 6.3 22 76-97 27-48 (200)
464 1nlf_A Regulatory protein REPA 95.7 0.0067 2.3E-07 50.1 3.7 25 75-99 31-55 (279)
465 2yl4_A ATP-binding cassette SU 95.7 0.029 1E-06 51.7 8.3 42 141-182 501-543 (595)
466 2f6r_A COA synthase, bifunctio 95.7 0.0082 2.8E-07 49.7 4.2 22 76-98 77-98 (281)
467 2qu8_A Putative nucleolar GTP- 95.7 0.16 5.3E-06 40.3 11.7 22 76-97 31-52 (228)
468 2gza_A Type IV secretion syste 95.7 0.005 1.7E-07 53.0 2.9 35 63-99 166-200 (361)
469 1z63_A Helicase of the SNF2/RA 95.7 0.067 2.3E-06 48.0 10.4 105 75-182 57-189 (500)
470 3ux8_A Excinuclease ABC, A sub 95.7 0.046 1.6E-06 51.1 9.5 41 142-182 565-607 (670)
471 1wf3_A GTP-binding protein; GT 95.7 0.066 2.2E-06 44.7 9.5 134 76-214 9-169 (301)
472 3def_A T7I23.11 protein; chlor 95.7 0.22 7.6E-06 40.4 12.5 23 76-98 38-60 (262)
473 3iev_A GTP-binding protein ERA 95.7 0.16 5.5E-06 42.5 11.9 21 77-97 13-33 (308)
474 2og2_A Putative signal recogni 95.6 0.0083 2.8E-07 51.4 4.0 26 77-102 160-185 (359)
475 3gee_A MNME, tRNA modification 95.6 0.042 1.4E-06 49.0 8.7 135 76-214 235-397 (476)
476 1zu4_A FTSY; GTPase, signal re 95.6 0.0089 3.1E-07 50.5 4.1 32 77-108 108-139 (320)
477 2qm8_A GTPase/ATPase; G protei 95.6 0.012 4.1E-07 50.1 4.9 36 75-110 56-91 (337)
478 1oix_A RAS-related protein RAB 95.6 0.0065 2.2E-07 47.0 3.0 22 77-98 32-53 (191)
479 2e87_A Hypothetical protein PH 95.6 0.054 1.8E-06 46.4 8.9 24 75-98 168-191 (357)
480 2onk_A Molybdate/tungstate ABC 95.6 0.007 2.4E-07 48.8 3.2 44 140-183 143-189 (240)
481 3tqf_A HPR(Ser) kinase; transf 95.6 0.0069 2.4E-07 45.8 2.8 22 76-97 18-39 (181)
482 2yhs_A FTSY, cell division pro 95.6 0.0088 3E-07 53.3 4.0 26 77-102 296-321 (503)
483 2zts_A Putative uncharacterize 95.6 0.0099 3.4E-07 47.9 4.0 22 76-97 32-53 (251)
484 3bk7_A ABC transporter ATP-bin 95.6 0.038 1.3E-06 50.9 8.3 116 72-196 115-302 (607)
485 3cpj_B GTP-binding protein YPT 95.6 0.051 1.8E-06 42.9 8.2 23 76-98 15-37 (223)
486 2ocp_A DGK, deoxyguanosine kin 95.6 0.0067 2.3E-07 48.9 2.9 23 76-98 4-26 (241)
487 2cbz_A Multidrug resistance-as 95.5 0.008 2.8E-07 48.4 3.3 43 141-183 145-191 (237)
488 3cr8_A Sulfate adenylyltranfer 95.5 0.0089 3E-07 54.3 3.8 42 58-99 351-394 (552)
489 2pcj_A ABC transporter, lipopr 95.5 0.0069 2.4E-07 48.3 2.8 43 140-182 157-201 (224)
490 1wb9_A DNA mismatch repair pro 95.5 0.038 1.3E-06 52.5 8.2 23 76-98 609-631 (800)
491 3th5_A RAS-related C3 botulinu 94.5 0.0024 8.3E-08 49.9 0.0 26 72-97 28-53 (204)
492 1m8p_A Sulfate adenylyltransfe 95.5 0.012 4.1E-07 53.8 4.5 24 76-99 398-421 (573)
493 2qtf_A Protein HFLX, GTP-bindi 95.4 0.15 5.2E-06 43.7 11.2 23 76-98 181-203 (364)
494 2whx_A Serine protease/ntpase/ 95.4 0.066 2.3E-06 49.5 9.5 24 75-98 187-211 (618)
495 2zej_A Dardarin, leucine-rich 95.4 0.0073 2.5E-07 46.4 2.7 21 76-96 4-24 (184)
496 1sgw_A Putative ABC transporte 95.4 0.0072 2.4E-07 47.9 2.6 44 140-183 150-195 (214)
497 3sop_A Neuronal-specific septi 95.4 0.0089 3E-07 49.2 3.3 24 76-99 4-27 (270)
498 2wji_A Ferrous iron transport 95.4 0.009 3.1E-07 44.9 3.1 22 76-97 5-26 (165)
499 3tmk_A Thymidylate kinase; pho 95.4 0.012 4E-07 46.7 3.8 25 75-99 6-30 (216)
500 4hlc_A DTMP kinase, thymidylat 95.4 0.039 1.3E-06 43.2 6.8 23 77-99 5-27 (205)
No 1
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=3.3e-37 Score=267.40 Aligned_cols=267 Identities=49% Similarity=0.875 Sum_probs=239.6
Q ss_pred CCcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcch
Q 021660 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 118 (309)
Q Consensus 39 ~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 118 (309)
...||.++|+|.++++++|++++++.+..++..++.++++|+||+|+|||++++.+++.+.+......+..++..+..+.
T Consensus 11 ~~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~ 90 (340)
T 1sxj_C 11 ENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGI 90 (340)
T ss_dssp -CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSH
T ss_pred cCCchHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccH
Confidence 45789999999999999999999999999999998888999999999999999999999987777778888888776667
Q ss_pred HHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEec
Q 021660 119 DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFA 198 (309)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~l~~r~~~i~~~ 198 (309)
+.++..+..+...... +.. ++++++|||+|.+..+.++.|++++++++..+.+|+++|....+.+++.+||..+.|.
T Consensus 91 ~~ir~~i~~~~~~~~~-~~~--~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~ 167 (340)
T 1sxj_C 91 DVVRNQIKDFASTRQI-FSK--GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQ 167 (340)
T ss_dssp HHHHTHHHHHHHBCCS-SSC--SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred HHHHHHHHHHHhhccc-CCC--CceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEecc
Confidence 7777666666543222 222 5799999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-----CcCHHHHHhhhCCCChHHHHHH
Q 021660 199 PLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQ-----QITEEAVYLCTGNPLPKDIEQI 273 (309)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~~-----~i~~~~v~~~~~~~~~~~~~~~ 273 (309)
+++.+++.+++..+++.+++.+++++++.+++.++|++|.+++.++.++.... .++.+.+..+++......++++
T Consensus 168 ~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~~~~~~~~i~~l 247 (340)
T 1sxj_C 168 PLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLKAV 247 (340)
T ss_dssp CCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHTTCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcccccccHHHHHHHhCCCCHHHHHHH
Confidence 99999999999999998999999999999999999999999999998876654 6999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 274 SYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 274 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
++++.+++...++..+.+++.+.|++|.+++..|.
T Consensus 248 ~~~i~~~~~~~al~~l~~l~~~~g~~~~~i~~~l~ 282 (340)
T 1sxj_C 248 LKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIV 282 (340)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999999999999999338999999988764
No 2
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=100.00 E-value=6e-37 Score=263.63 Aligned_cols=267 Identities=40% Similarity=0.729 Sum_probs=235.0
Q ss_pred CCcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcch
Q 021660 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 118 (309)
Q Consensus 39 ~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 118 (309)
+..||.++|+|..+++++|++..++.+.+++..++.++++|+||+|+|||++++.+++.+.+.++...++.+++....+.
T Consensus 3 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~ 82 (319)
T 2chq_A 3 NFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI 82 (319)
T ss_dssp ---CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCT
T ss_pred ccccHHHhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccCh
Confidence 45789999999999999999999999999999988878999999999999999999999877766677888888765555
Q ss_pred HHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEec
Q 021660 119 DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFA 198 (309)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~l~~r~~~i~~~ 198 (309)
..+...+..+....+. . ..++++++|||+|.+..+.++.|.+++++++.++++|++++....+.+++.+||..+.|.
T Consensus 83 ~~~~~~~~~~~~~~~~--~-~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~ 159 (319)
T 2chq_A 83 DVVRHKIKEFARTAPI--G-GAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFK 159 (319)
T ss_dssp TTSSHHHHHHHHSCCS--S-SCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECC
T ss_pred HHHHHHHHHHHhcCCC--C-CCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEec
Confidence 5555555554422221 1 125789999999999999999999999998889999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcCHHHHHhhhCCCChHHHHHHHHHHh
Q 021660 199 PLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLL 278 (309)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~ 278 (309)
+++.+++..++..++.+.++.+++++++.+++.++||+|.+++.++.++...+.|+.+++..++.......++++++++.
T Consensus 160 ~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l~~~~~ 239 (319)
T 2chq_A 160 PVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQITATARPEEMTELIQTAL 239 (319)
T ss_dssp CCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHSSSCBCHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988777899999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 279 NESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 279 ~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
.++...++..+.+++...|.+|..++..+.
T Consensus 240 ~~~~~~a~~~l~~l~~~~g~~~~~i~~~l~ 269 (319)
T 2chq_A 240 KGNFMEARELLDRLMVEYGMSGEDIVAQLF 269 (319)
T ss_dssp HTCHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999999338999999987764
No 3
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=3.6e-36 Score=259.61 Aligned_cols=267 Identities=43% Similarity=0.784 Sum_probs=236.9
Q ss_pred CCcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcch
Q 021660 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 118 (309)
Q Consensus 39 ~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 118 (309)
...||.++|+|.++++++|+++.++.+..++..++.++++|+||+|+|||++++.+++.+.+......++.+++.+..+.
T Consensus 11 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~ 90 (327)
T 1iqp_A 11 LEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGI 90 (327)
T ss_dssp TTSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHH
T ss_pred cCCchhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCch
Confidence 35689999999999999999999999999999998888999999999999999999999876666667888888765555
Q ss_pred HHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEec
Q 021660 119 DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFA 198 (309)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~l~~r~~~i~~~ 198 (309)
..+...+..+....+. .. .++++|+|||++.++.+.++.|+.++++++.++++|++++....+.+.+.+||..+.|+
T Consensus 91 ~~~~~~~~~~~~~~~~-~~--~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~ 167 (327)
T 1iqp_A 91 NVIREKVKEFARTKPI-GG--ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFR 167 (327)
T ss_dssp HTTHHHHHHHHHSCCG-GG--CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECC
T ss_pred HHHHHHHHHHHhhCCc-CC--CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEec
Confidence 5555555555432221 11 25789999999999999999999999998889999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcCHHHHHhhhCCCChHHHHHHHHHHh
Q 021660 199 PLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLL 278 (309)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~ 278 (309)
+++.+++..++..++.+.++.+++++++.+++.++||+|.+++.++.+......++.+++...+.......++++++++.
T Consensus 168 ~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~ 247 (327)
T 1iqp_A 168 PLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITDENVFMVASRARPEDIREMMLLAL 247 (327)
T ss_dssp CCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSEECHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887777899999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 279 NESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 279 ~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
.++...++..+++++...|.+|.+++..|.
T Consensus 248 ~~~~~~~~~~~~~ll~~~g~~~~~i~~~l~ 277 (327)
T 1iqp_A 248 KGNFLKAREKLREILLKQGLSGEDVLVQMH 277 (327)
T ss_dssp HTCHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999998677999999988764
No 4
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=2.6e-35 Score=256.92 Aligned_cols=274 Identities=38% Similarity=0.652 Sum_probs=230.7
Q ss_pred CCCCCCCcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccC-cccccEEEEec
Q 021660 34 TPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA-QYHNMILELNA 112 (309)
Q Consensus 34 ~~~~~~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~-~~~~~~~~~~~ 112 (309)
..++.+..||.++|+|..+++++|+++.++.+..++..+..++++|+||||+|||++++.+++.+.+. .....+..+++
T Consensus 18 ~~~~~~~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 97 (353)
T 1sxj_D 18 AEQSLAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA 97 (353)
T ss_dssp --------CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS
T ss_pred hhhcccCccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc
Confidence 34455668999999999999999999999999999999887789999999999999999999998532 23456777887
Q ss_pred CCCcchHHHHHHHHHhhhccccc-------cCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcccc
Q 021660 113 SDDRGIDVVRQQIQDFASTQSFS-------FGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKII 185 (309)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~ 185 (309)
.+..+...+.+.+..+....... ......+.+|+|||++.+....++.|++++++.+...++|++++....+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~ 177 (353)
T 1sxj_D 98 SDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRII 177 (353)
T ss_dssp SSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred ccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCc
Confidence 77556666655555444321110 01112568999999999999999999999999988889999999999999
Q ss_pred hhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC------CcCHHHHH
Q 021660 186 PALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQ------QITEEAVY 259 (309)
Q Consensus 186 ~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~~------~i~~~~v~ 259 (309)
+.+.+||..+.|.+++.+++..++..++...++.+++++++.+++.++||+|.+++.++.++...+ .|+.++|.
T Consensus 178 ~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~ 257 (353)
T 1sxj_D 178 DPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVE 257 (353)
T ss_dssp HHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHH
T ss_pred chhhccCceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCccCccccHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998876542 69999999
Q ss_pred hhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 260 LCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
.++.......++++++++.+++...++..+++++ ..|.+|..|+..|.
T Consensus 258 ~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~-~~g~~~~~i~~~l~ 305 (353)
T 1sxj_D 258 ELAGVVPHDILIEIVEKVKSGDFDEIKKYVNTFM-KSGWSAASVVNQLH 305 (353)
T ss_dssp HHHTCCCSHHHHHHHHHHHSCCHHHHHHHHHHHH-HTSCCCTTHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCCHHHHHHHHH
Confidence 9999988889999999999999999999999999 89999998887654
No 5
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=1.1e-34 Score=249.81 Aligned_cols=264 Identities=40% Similarity=0.682 Sum_probs=232.2
Q ss_pred CCcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcch
Q 021660 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 118 (309)
Q Consensus 39 ~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 118 (309)
+..||.++|+|..+++++|++..++.+.+++..++.++++|+||+|+|||++++.+++.+.+..+...++.+++.+..+.
T Consensus 7 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~ 86 (323)
T 1sxj_B 7 LQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGI 86 (323)
T ss_dssp CCCCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSH
T ss_pred ccCcHHHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccCh
Confidence 35689999999999999999999999999999988888999999999999999999999877666677888888776666
Q ss_pred HHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEec
Q 021660 119 DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFA 198 (309)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~l~~r~~~i~~~ 198 (309)
..+...+..+...... +. ...+.+|+|||++.+..+..+.|++++++++..+.+|++++....+.+.+.+||..+.|.
T Consensus 87 ~~i~~~~~~~~~~~~~-~~-~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~ 164 (323)
T 1sxj_B 87 DVVRNQIKHFAQKKLH-LP-PGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYS 164 (323)
T ss_dssp HHHHTHHHHHHHBCCC-CC-TTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred HHHHHHHHHHHhcccc-CC-CCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeec
Confidence 6666666655422111 10 114789999999999999999999999999889999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcCHHHHHhhhCCCChHHHHHHHHHHh
Q 021660 199 PLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLL 278 (309)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~ 278 (309)
+++.+++..++..++...++.+++++++.+++.++|++|.+++.++.++...+.++.+++..+++......+++++++
T Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~~~~~-- 242 (323)
T 1sxj_B 165 KLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKMLLA-- 242 (323)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSBCHHHHHHHHTSCCHHHHHHHHSC--
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHCCCCHHHHHHHHhc--
Confidence 999999999999999999999999999999999999999999999998876678999999999999988888888887
Q ss_pred cCCHHHHHHHHHH-HHHhcCCCHHHHHHHhh
Q 021660 279 NESFADSFKRISE-MKMRKGLALVDIVREVT 308 (309)
Q Consensus 279 ~~~~~~~~~~l~~-~~~~~g~~~~~~~~~l~ 308 (309)
++...++..+.+ ++ ..|.++.+++..+.
T Consensus 243 -~~~~~~l~~l~~dl~-~~g~~~~~i~~~l~ 271 (323)
T 1sxj_B 243 -SNLEDSIQILRTDLW-KKGYSSIDIVTTSF 271 (323)
T ss_dssp -SSHHHHHHHHHHTTT-TTTCCHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHH-HcCCCHHHHHHHHH
Confidence 788889999998 88 78999999887663
No 6
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=100.00 E-value=7.8e-34 Score=244.75 Aligned_cols=254 Identities=27% Similarity=0.387 Sum_probs=209.8
Q ss_pred CCCcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCc
Q 021660 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR 116 (309)
Q Consensus 38 ~~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 116 (309)
....+|.++|+|.++++++|+++.++.+.+++..+..++ ++++||||+|||++++.+++.+ +..++.+++...
T Consensus 11 ~~~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l-----~~~~~~i~~~~~- 84 (324)
T 3u61_B 11 EKEHILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV-----NADMMFVNGSDC- 84 (324)
T ss_dssp TTCSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT-----TEEEEEEETTTC-
T ss_pred cccchHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh-----CCCEEEEccccc-
Confidence 456789999999999999999999999999999888777 6778889999999999999998 677888888763
Q ss_pred chHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCC-HHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEE
Q 021660 117 GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT-KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRF 195 (309)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~-~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~l~~r~~~i 195 (309)
+...+...+..+....+. . ..+++|+|||+|.+. .+.++.|+.+++.++.++++|+++|....+.+++.+||.++
T Consensus 85 ~~~~i~~~~~~~~~~~~~--~--~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i 160 (324)
T 3u61_B 85 KIDFVRGPLTNFASAASF--D--GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVI 160 (324)
T ss_dssp CHHHHHTHHHHHHHBCCC--S--SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEE
T ss_pred CHHHHHHHHHHHHhhccc--C--CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEE
Confidence 366666666665544322 1 258899999999999 88999999999999889999999999999999999999999
Q ss_pred EecCCChHH-------HHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcCHHHHHhhhCCCCh
Q 021660 196 RFAPLEPVH-------VTERLKHVIEAEGLDVTE-GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLP 267 (309)
Q Consensus 196 ~~~~~~~~~-------~~~~l~~~~~~~~~~~~~-~~l~~i~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~ 267 (309)
.|++|+.++ +..++...+..+++.+++ ++++.+++.++||+|.+++.|+.++ ..+.|+.+++..++.. .
T Consensus 161 ~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~~-~~~~i~~~~v~~~~~~--~ 237 (324)
T 3u61_B 161 TFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSYS-SKGVLDAGILSLVTND--R 237 (324)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHHG-GGTCBCC------------
T ss_pred EeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHHHHh-ccCCCCHHHHHHHhCC--H
Confidence 999999877 445566667788999998 9999999999999999999999998 5577999999988765 4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 268 KDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
..++.+++++..++...++..+.+++ . +|..|+..|.
T Consensus 238 ~~i~~~~~~~~~~~~~~a~~~~~~l~-~---~~~~i~~~l~ 274 (324)
T 3u61_B 238 GAIDDVLESLKNKDVKQLRALAPKYA-A---DYSWFVGKLA 274 (324)
T ss_dssp --CHHHHHHHHTTCHHHHHHHHHHHS-S---CHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhc-c---CHHHHHHHHH
Confidence 56789999999999999999999999 4 8888887664
No 7
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=100.00 E-value=2.8e-33 Score=245.92 Aligned_cols=263 Identities=21% Similarity=0.344 Sum_probs=226.2
Q ss_pred CcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCcc---------------
Q 021660 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY--------------- 103 (309)
Q Consensus 40 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~--------------- 103 (309)
..+|.++|+|..+++++|+++.++.+..++..++.++ ++|+||+|+|||++++.+++.+.+...
T Consensus 3 ~~~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 82 (373)
T 1jr3_A 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREI 82 (373)
T ss_dssp CCCHHHHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHH
T ss_pred cHHHHHhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Confidence 4679999999999999999999999999999887666 899999999999999999999865431
Q ss_pred ----cccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021660 104 ----HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (309)
Q Consensus 104 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~ 179 (309)
...+..++.....+.+.+...+..+.... ...++++|+|||+|.+..+..+.|++++++++.++.+|++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~ 157 (373)
T 1jr3_A 83 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP-----ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 157 (373)
T ss_dssp HTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCC-----SSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEES
T ss_pred hccCCCceEEecccccCCHHHHHHHHHHHhhcc-----ccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 11345555544344445555554433211 112578999999999999999999999999888999999999
Q ss_pred CCcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCcCHHHH
Q 021660 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEAV 258 (309)
Q Consensus 180 ~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~-~~i~~~~v 258 (309)
....+.+.+.+||..+.|.+++.+++..++..++.+.|+.+++++++.+++.++|++|.+.+.++.+...+ +.|+.++|
T Consensus 158 ~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~~~~~i~~~~v 237 (373)
T 1jr3_A 158 DPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 (373)
T ss_dssp CGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHHTTTCBCHHHH
T ss_pred ChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999998877544 67999999
Q ss_pred HhhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
..++.......++++++++..++...++..+.++. ..|.++..++..|.
T Consensus 238 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~-~~g~~~~~~l~~l~ 286 (373)
T 1jr3_A 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAA-ARGIEWEALLVEML 286 (373)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHTCHHHHHHHHHHHH-HTTCCHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCcCHHHHHHHHH
Confidence 99999999999999999999999999999999999 89999998876653
No 8
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=100.00 E-value=4.1e-33 Score=248.03 Aligned_cols=254 Identities=21% Similarity=0.315 Sum_probs=212.0
Q ss_pred cChhhhcCCCCccccccChHHH---HHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcc
Q 021660 41 SPWVEKYRPQSLADVAAHRDIV---DTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG 117 (309)
Q Consensus 41 ~~~~~~~~p~~~~~~ig~~~~~---~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 117 (309)
.||.++++|.++++++|+++.+ ..+...+..++.++++|+||||||||++++.+++.+ ...+..+++.. .+
T Consensus 14 ~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~-----~~~f~~l~a~~-~~ 87 (447)
T 3pvs_A 14 QPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA-----NADVERISAVT-SG 87 (447)
T ss_dssp CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT-----TCEEEEEETTT-CC
T ss_pred CChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh-----CCCeEEEEecc-CC
Confidence 6899999999999999999999 799999999988889999999999999999999997 56677777765 45
Q ss_pred hHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEe--cCCcccchhhhcceeEE
Q 021660 118 IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC--NQVNKIIPALQSRCTRF 195 (309)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~--~~~~~l~~~l~~r~~~i 195 (309)
...++..+........ ...+.+|+|||++.++...++.|+..+++ ....+|++| +....+.+++.+||.++
T Consensus 88 ~~~ir~~~~~a~~~~~-----~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~sR~~v~ 160 (447)
T 3pvs_A 88 VKEIREAIERARQNRN-----AGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSRARVY 160 (447)
T ss_dssp HHHHHHHHHHHHHHHH-----TTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHhhh-----cCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhCceeEE
Confidence 5556655554433211 12578999999999999999999999996 356677666 34457889999999999
Q ss_pred EecCCChHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-------CcCHHHHHhh
Q 021660 196 RFAPLEPVHVTERLKHVIEA-------EGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQ-------QITEEAVYLC 261 (309)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~~-------~i~~~~v~~~ 261 (309)
.|.+++.+++..++.+.+.. .++.+++++++.+++.++||+|.+++.|+.+...+. .||.+++.++
T Consensus 161 ~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~ 240 (447)
T 3pvs_A 161 LLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEI 240 (447)
T ss_dssp ECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHH
T ss_pred eeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHH
Confidence 99999999999999999987 557799999999999999999999999999887653 5999999999
Q ss_pred hCCCC----------hHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 262 TGNPL----------PKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 262 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
+.... ++.++.+++++.+++++.+++++.+|+ ..|.+|..|.+.|+
T Consensus 241 l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml-~~Gedp~~i~rrl~ 296 (447)
T 3pvs_A 241 AGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARII-TAGGDPLYVARRCL 296 (447)
T ss_dssp HTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTCCHHHHHHHHH
T ss_pred HhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCHHHHHHHHH
Confidence 98653 356888999999999999999999999 99999999998875
No 9
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=6.9e-33 Score=241.75 Aligned_cols=265 Identities=27% Similarity=0.482 Sum_probs=205.1
Q ss_pred cChhhhcCCCCccccccChHHHHHHHHHH-hcCCCCeEEEECCCCCcHHHHHHHHHHHHccCccc---------------
Q 021660 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLT-SENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYH--------------- 104 (309)
Q Consensus 41 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~~-~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~--------------- 104 (309)
.+|.++|+|.++++++|++.+++.+.+++ ..++.++++|+||+|+||||+++.+++.+.+...+
T Consensus 2 ~~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~ 81 (354)
T 1sxj_E 2 SLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNR 81 (354)
T ss_dssp --CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------
T ss_pred CcchhccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccc
Confidence 37999999999999999999999999999 88877789999999999999999999987543321
Q ss_pred ---------ccEEEEecCCCcchH--HHHHHHHHhhhccccc----cCC-CCccEEEEEeCCCCCCHHHHHHHHHHHHHh
Q 021660 105 ---------NMILELNASDDRGID--VVRQQIQDFASTQSFS----FGV-KASVKLVLLDEADAMTKDAQFALRRVIEKY 168 (309)
Q Consensus 105 ---------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~-~~~~~lliiDe~~~l~~~~~~~l~~~l~~~ 168 (309)
..+..++........ .++..+..+....... ++. ..++++++|||++.+....++.|++.++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 82 KLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp ----CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred cceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 123344433211111 2444455443322210 011 226889999999999999999999999998
Q ss_pred cCCceEEEEecCCcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 021660 169 TKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT-EGGLAALVRLCNGDMRKALNILQSTH 247 (309)
Q Consensus 169 ~~~~~~i~~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~l~~i~~~~~g~~r~~~~~l~~~~ 247 (309)
+.+..+|++|+....+.+.+.+||..+.|.+++.+++..++..++.++|+.++ +++++.+++.++||+|.+++.++.+.
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~~~~ 241 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMA 241 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHTHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999 99999999999999999999999988
Q ss_pred hhcC-CcCHHHHHhhhCCCChHHHHHHHHHHhcCCHH----HHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 248 MASQ-QITEEAVYLCTGNPLPKDIEQISYWLLNESFA----DSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 248 ~~~~-~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
.... .|+.+.+ .........++++++++...+.. .+...+.+++ ..|.++.+|+..|.
T Consensus 242 ~~~~~~i~~~~~--~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~l~~l~-~~g~~~~~i~~~l~ 304 (354)
T 1sxj_E 242 LNNELALKSSSP--IIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLL-AHCIPANIILKELT 304 (354)
T ss_dssp HTTTTEECSSCC--CCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH-TTTCCHHHHHHHHH
T ss_pred HhCCCCcCcCcC--CCCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH-HcCCCHHHHHHHHH
Confidence 7664 5776543 11222345678999998875544 4445566666 78999999988764
No 10
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=100.00 E-value=9.9e-31 Score=213.13 Aligned_cols=222 Identities=45% Similarity=0.799 Sum_probs=195.3
Q ss_pred CCcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcch
Q 021660 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 118 (309)
Q Consensus 39 ~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 118 (309)
...+|.++|+|..+++++|++..++.+..++.....++++|+||+|+|||++++.+++.+...+....++.+++....+.
T Consensus 3 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (226)
T 2chg_A 3 NFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI 82 (226)
T ss_dssp -CCCHHHHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCH
T ss_pred chhhHHHhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccCh
Confidence 45789999999999999999999999999999887777999999999999999999999877777788888888776666
Q ss_pred HHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEec
Q 021660 119 DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFA 198 (309)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~l~~r~~~i~~~ 198 (309)
..+...+..+...... ....+.+|+|||++.+.....+.|..+++..+....+|++++....+.+.+.+|+..+.|+
T Consensus 83 ~~~~~~~~~~~~~~~~---~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~ 159 (226)
T 2chg_A 83 DVVRHKIKEFARTAPI---GGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFK 159 (226)
T ss_dssp HHHHHHHHHHHTSCCS---TTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred HHHHHHHHHHhcccCC---CccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecC
Confidence 6666655555433211 1125789999999999999999999999998888899999998888999999999999999
Q ss_pred CCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcCHHHHHhhhC
Q 021660 199 PLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTG 263 (309)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~ 263 (309)
+++.+++..++..++...+..+++++++.+++.++||+|.+++.++.++..++.|+.+++..+++
T Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~~~I~~~~v~~~~~ 224 (226)
T 2chg_A 160 PVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQITA 224 (226)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSCBCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCceecHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999998888899999988775
No 11
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.96 E-value=7.3e-28 Score=198.78 Aligned_cols=220 Identities=23% Similarity=0.389 Sum_probs=178.9
Q ss_pred CCcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCccc-------------
Q 021660 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQYH------------- 104 (309)
Q Consensus 39 ~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~~------------- 104 (309)
+..+|.++|+|..+++++|++..++.+..++..+..++ ++|+||+|+|||++++.+++.+......
T Consensus 9 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (250)
T 1njg_A 9 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 88 (250)
T ss_dssp --CCHHHHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHH
T ss_pred HHHHHhhccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 45789999999999999999999999999998876554 9999999999999999999988543211
Q ss_pred ------ccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEe
Q 021660 105 ------NMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC 178 (309)
Q Consensus 105 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~ 178 (309)
..+..+..........+...+..+.. .....++.+|+|||++.+.....+.|+..++..+....+|+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t 163 (250)
T 1njg_A 89 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY-----APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT 163 (250)
T ss_dssp HHTTCCSSEEEEETTCGGGHHHHHHHHHSCCC-----SCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEE
T ss_pred HhccCCcceEEecCcccccHHHHHHHHHHhhh-----chhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEe
Confidence 13344444433333333333332211 1112257899999999999999999999999887788899999
Q ss_pred cCCcccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCcCHHH
Q 021660 179 NQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEA 257 (309)
Q Consensus 179 ~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~-~~i~~~~ 257 (309)
+....+.+.+.+|+..+.+++++.+++.+++..++.+.+..+++++++.+++.++|++|.+.+.++.+...+ +.|+.++
T Consensus 164 ~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~~~~i~~~~ 243 (250)
T 1njg_A 164 TDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 243 (250)
T ss_dssp SCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTTTSSBCHHH
T ss_pred CChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCceecHHH
Confidence 988888899999999999999999999999999999999999999999999999999999999999887655 5799999
Q ss_pred HHhhhC
Q 021660 258 VYLCTG 263 (309)
Q Consensus 258 v~~~~~ 263 (309)
++++++
T Consensus 244 v~~~~~ 249 (250)
T 1njg_A 244 VSAMLG 249 (250)
T ss_dssp HHHHSC
T ss_pred HHHHhC
Confidence 988764
No 12
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.96 E-value=3.6e-28 Score=205.88 Aligned_cols=236 Identities=17% Similarity=0.186 Sum_probs=189.8
Q ss_pred cChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHc-cCcccccEEEEecCC-CcchHHHHHHHHHhhhcccc
Q 021660 57 AHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY-GAQYHNMILELNASD-DRGIDVVRQQIQDFASTQSF 134 (309)
Q Consensus 57 g~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 134 (309)
|++++++.+.+.++.++.++++|+||||+|||++++.+++.+. +.....++..++... ..+.+.++..+..+...+.
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~- 79 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPE- 79 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCS-
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccc-
Confidence 6889999999999988866799999999999999999998642 222355778888764 5677778876666543322
Q ss_pred ccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEecCCChHHHHHHHHHHHH
Q 021660 135 SFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE 214 (309)
Q Consensus 135 ~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~ 214 (309)
. .+++|+||||+|.+..+.++.|++.++++++++++|++|+.+.++.+++++| .+.|.+++.+++..++.+.+
T Consensus 80 --~--~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR--~~~f~~l~~~~i~~~L~~~~- 152 (305)
T 2gno_A 80 --L--YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR--VFRVVVNVPKEFRDLVKEKI- 152 (305)
T ss_dssp --S--SSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCHHHHHHHHHHH-
T ss_pred --c--CCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce--eEeCCCCCHHHHHHHHHHHh-
Confidence 1 2589999999999999999999999999999999999999999999999999 99999999999999999887
Q ss_pred HcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------cCCcCHHHHHhhhCCCChH--HHHHHHHHHhcCCHHH
Q 021660 215 AEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA--------SQQITEEAVYLCTGNPLPK--DIEQISYWLLNESFAD 284 (309)
Q Consensus 215 ~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~--------~~~i~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~ 284 (309)
.++++++ +.+.|++|.+++.++..... ....+.++|...+...... +++++++++..++...
T Consensus 153 ----~i~~~~~----~~~~g~~~~al~~l~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~v~~l~~ai~~~~~~~ 224 (305)
T 2gno_A 153 ----GDLWEEL----PLLERDFKTALEAYKLGAEKLSGLMESLKVLETEKLLKKVLSKGLEGYLACRELLERFSKVESKE 224 (305)
T ss_dssp ----TTHHHHC----GGGGTCHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTTTTCSHHHHHHHHHHHHHHHHHSCGGG
T ss_pred ----CCCHHHH----HHHCCCHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHccCCcchHHHHHHHHHHHCCCHHH
Confidence 3566655 55799999999888532210 0112467788888777644 8999999999999999
Q ss_pred HHHHHHHHHHh-cCCCHHHHHHHhh
Q 021660 285 SFKRISEMKMR-KGLALVDIVREVT 308 (309)
Q Consensus 285 ~~~~l~~~~~~-~g~~~~~~~~~l~ 308 (309)
++..+++++.. .|.+|.+++..++
T Consensus 225 a~~~~~~l~~~~~g~~~~~~i~~~~ 249 (305)
T 2gno_A 225 FFALFDQVTNTITGKDAFLLIQRLT 249 (305)
T ss_dssp HHHHHHHHHHHSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 99999999933 8999988887765
No 13
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.96 E-value=2.3e-27 Score=215.97 Aligned_cols=241 Identities=24% Similarity=0.387 Sum_probs=184.1
Q ss_pred CCCCCCCCcChhhhcCCCCccccccChHHHHHHHHHHhcC-----------------CCCeEEEECCCCCcHHHHHHHHH
Q 021660 33 GTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSEN-----------------RLPHLLLYGPPGTGKTSTILAVA 95 (309)
Q Consensus 33 ~~~~~~~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~-----------------~~~~~ll~G~~G~GKT~l~~~l~ 95 (309)
..+......+|.++|+|.++++++|++..++.+..++... ..+.++|+||||+|||++|+.++
T Consensus 19 ~~~~~~~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la 98 (516)
T 1sxj_A 19 QGPHMASDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVA 98 (516)
T ss_dssp -------CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCCccCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 3344556788999999999999999999999999998751 23469999999999999999999
Q ss_pred HHHccCcccccEEEEecCCCcchHHHHHHHHHhhhcccc--cc-------CCCCccEEEEEeCCCCCCHHHH---HHHHH
Q 021660 96 RKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSF--SF-------GVKASVKLVLLDEADAMTKDAQ---FALRR 163 (309)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------~~~~~~~lliiDe~~~l~~~~~---~~l~~ 163 (309)
+++ +..++.+++........+...+......... .+ .....+.+|+|||+|.+....+ +.|..
T Consensus 99 ~~l-----~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~ 173 (516)
T 1sxj_A 99 QEL-----GYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQ 173 (516)
T ss_dssp HHT-----TCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHH
T ss_pred HHc-----CCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHH
Confidence 998 6778888888765554444333322211110 01 1123678999999999976443 67777
Q ss_pred HHHHhcCCceEEEEecCCc-ccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHH
Q 021660 164 VIEKYTKNTRFALICNQVN-KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNI 242 (309)
Q Consensus 164 ~l~~~~~~~~~i~~~~~~~-~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~ 242 (309)
+++.. ..++|++++... ...+.+.+|+..+.|.+|+.+++.+++..++.++++.+++++++.|++.++||+|.+++.
T Consensus 174 ~l~~~--~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~i~~ 251 (516)
T 1sxj_A 174 FCRKT--STPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINL 251 (516)
T ss_dssp HHHHC--SSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHH
T ss_pred HHHhc--CCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 77753 455777776543 344568889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCcCHHHHHhhhC---CCChHHHHHHHHHHhcC
Q 021660 243 LQSTHMASQQITEEAVYLCTG---NPLPKDIEQISYWLLNE 280 (309)
Q Consensus 243 l~~~~~~~~~i~~~~v~~~~~---~~~~~~~~~~~~~~~~~ 280 (309)
|+.++...+.|+.+++..++. ......++++++.+..+
T Consensus 252 L~~~~~~~~~It~~~v~~~~~~~~~~~~~~~f~~~~~il~~ 292 (516)
T 1sxj_A 252 LSTISTTTKTINHENINEISKAWEKNIALKPFDIAHKMLDG 292 (516)
T ss_dssp HTHHHHHSSCCCTTHHHHHHHHHHTTTTSHHHHHHHHHTBG
T ss_pred HHHHHhcCCCCchHHHHHHHHhhccCCCCCHHHHHHHHhcC
Confidence 999888778899998887765 44455677888887763
No 14
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.94 E-value=4.3e-26 Score=196.72 Aligned_cols=223 Identities=22% Similarity=0.291 Sum_probs=175.1
Q ss_pred ChHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHccCcc-------------------cccEEEEecC---C
Q 021660 58 HRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY-------------------HNMILELNAS---D 114 (309)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~-------------------~~~~~~~~~~---~ 114 (309)
+++..+.+.+.+..++.++ ++|+||+|+|||++++.+++.+.+... ..++..++.. .
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 86 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKN 86 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCS
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCC
Confidence 5688899999999988877 999999999999999999999976542 1456666664 3
Q ss_pred CcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeE
Q 021660 115 DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTR 194 (309)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~l~~r~~~ 194 (309)
..+.+.++..+..+...+. ..+++|+||||+|.++.+..+.|++.+++++.++.+|++++...++++++++||..
T Consensus 87 ~~~i~~ir~l~~~~~~~~~-----~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~ 161 (334)
T 1a5t_A 87 TLGVDAVREVTEKLNEHAR-----LGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRL 161 (334)
T ss_dssp SBCHHHHHHHHHHTTSCCT-----TSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred CCCHHHHHHHHHHHhhccc-----cCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhccee
Confidence 4566677766555443221 12689999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCcCHHHHHhhhCCCChHHHHHHH
Q 021660 195 FRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQIS 274 (309)
Q Consensus 195 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~ 274 (309)
+.|.+++.+++.+++..++ .+++++++.+++.++|++|.+++.++........+..+.+...+.. ..+..++
T Consensus 162 ~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r~a~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 233 (334)
T 1a5t_A 162 HYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPGAALALFQGDNWQARETLCQALAYSVPS---GDWYSLL 233 (334)
T ss_dssp EECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHHHHHHTTSSHHHHHHHHHHHHHHHHHHH---CCCGGGH
T ss_pred eeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHHHHHHHhccchHHHHHHHHHHHHHHHhC---hHHHHHH
Confidence 9999999999999998764 6899999999999999999999998765543333445555555431 1223455
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 021660 275 YWLLNESFADSFKRISEMK 293 (309)
Q Consensus 275 ~~~~~~~~~~~~~~l~~~~ 293 (309)
+.+.+.+....+..+..++
T Consensus 234 ~~l~~~~~~~~l~~l~~~~ 252 (334)
T 1a5t_A 234 AALNHEQAPARLHWLATLL 252 (334)
T ss_dssp HHHCSTTHHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHH
Confidence 6666667777666665543
No 15
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.94 E-value=2.2e-25 Score=193.05 Aligned_cols=209 Identities=15% Similarity=0.205 Sum_probs=166.8
Q ss_pred CCCcChhhhcCCCCccccccChHHHHHHHHHHhc-----CCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEec
Q 021660 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSE-----NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (309)
Q Consensus 38 ~~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~-----~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 112 (309)
.....|.++|+|.++++++|++..++.+..++.. ...++++|+||||||||++|+.+++.+ ...++.+++
T Consensus 14 ~~~~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~-----~~~~~~~~~ 88 (338)
T 3pfi_A 14 SFDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM-----SANIKTTAA 88 (338)
T ss_dssp ---------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT-----TCCEEEEEG
T ss_pred chhhhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh-----CCCeEEecc
Confidence 4556799999999999999999999999888864 334569999999999999999999997 556777777
Q ss_pred CCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc------------------CCceE
Q 021660 113 SDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT------------------KNTRF 174 (309)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~------------------~~~~~ 174 (309)
........+...+... ..+.+|+|||++.++.+.++.|+..+++.. +...+
T Consensus 89 ~~~~~~~~~~~~~~~~-----------~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 89 PMIEKSGDLAAILTNL-----------SEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp GGCCSHHHHHHHHHTC-----------CTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred hhccchhHHHHHHHhc-----------cCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 6554444444433321 157899999999999999999999998642 12578
Q ss_pred EEEecCCcccchhhhcce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhh----
Q 021660 175 ALICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA---- 249 (309)
Q Consensus 175 i~~~~~~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~---- 249 (309)
|++||....+.+.+.+|+ ..+.|++|+.+++..++...+...+..+++++++.+++.++|++|.+.+.++.+...
T Consensus 158 i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~ 237 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVN 237 (338)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhh
Confidence 888898888999999999 899999999999999999999999999999999999999999999999999886432
Q ss_pred -cCCcCHHHHHhhh
Q 021660 250 -SQQITEEAVYLCT 262 (309)
Q Consensus 250 -~~~i~~~~v~~~~ 262 (309)
.+.|+.+++..++
T Consensus 238 ~~~~i~~~~~~~~~ 251 (338)
T 3pfi_A 238 DEEIITEKRANEAL 251 (338)
T ss_dssp TCSEECHHHHHHHH
T ss_pred cCCccCHHHHHHHH
Confidence 2458888887665
No 16
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=99.94 E-value=3.9e-26 Score=198.02 Aligned_cols=232 Identities=12% Similarity=0.079 Sum_probs=192.1
Q ss_pred HHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccc-cEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEE
Q 021660 66 DRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHN-MILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKL 144 (309)
Q Consensus 66 ~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 144 (309)
.+.+++.-.+.++|+||+|+||++.+..+++.+.+.++.. .++.++. . ..+.+.+.... ..+. ++ ++++
T Consensus 10 ~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~---~~~~~l~~~~~-~~pl-f~---~~kv 79 (343)
T 1jr3_D 10 RAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP--N---TDWNAIFSLCQ-AMSL-FA---SRQT 79 (343)
T ss_dssp HHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT--T---CCHHHHHHHHH-HHHH-CC---SCEE
T ss_pred HHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC--C---CCHHHHHHHhc-CcCC-cc---CCeE
Confidence 3344433445599999999999999999999886554322 3334432 2 22333333322 2121 22 5899
Q ss_pred EEEeCCCC-CCHHHHHHHHHHHHHhcCCceEEEEecCC------cccchhhhcceeEEEecCCChHHHHHHHHHHHHHcC
Q 021660 145 VLLDEADA-MTKDAQFALRRVIEKYTKNTRFALICNQV------NKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEG 217 (309)
Q Consensus 145 liiDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~~~~~------~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~ 217 (309)
++|||++. ++.+..+.|.++++++++++++|++++.. .++.+++.+||.++.|.+++.+++..|+.++++++|
T Consensus 80 vii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g 159 (343)
T 1jr3_D 80 LLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLN 159 (343)
T ss_dssp EEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 99999999 99888999999999999999999998753 467889999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--CCcCHHHHHhhhCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 021660 218 LDVTEGGLAALVRLCNGDMRKALNILQSTHMAS--QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMR 295 (309)
Q Consensus 218 ~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~--~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 295 (309)
+.+++++++.+++.++||++.+.+.|++++.+. +.||.++|...+.......++++++++.+++...++..+++++ .
T Consensus 160 ~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~~~~~if~l~~ai~~~d~~~al~~l~~l~-~ 238 (343)
T 1jr3_D 160 LELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLR-L 238 (343)
T ss_dssp CEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHCCCCHHHHHHHHTTSCHHHHHHHHTSST-T
T ss_pred CCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCHHHHHHHHHHHH-H
Confidence 999999999999999999999999999999863 5799999999998888889999999999999999999999999 9
Q ss_pred cCCCHHHHHHHhh
Q 021660 296 KGLALVDIVREVT 308 (309)
Q Consensus 296 ~g~~~~~~~~~l~ 308 (309)
.|.+|..+++.|.
T Consensus 239 ~g~~~~~il~~l~ 251 (343)
T 1jr3_D 239 EGSEPVILLRTLQ 251 (343)
T ss_dssp TTCCHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 9999999988764
No 17
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.93 E-value=2.8e-24 Score=185.02 Aligned_cols=205 Identities=19% Similarity=0.240 Sum_probs=165.4
Q ss_pred hhhhcCCCCccccccChHHHHHHHHHHhc-----CCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcc
Q 021660 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSE-----NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG 117 (309)
Q Consensus 43 ~~~~~~p~~~~~~ig~~~~~~~l~~~~~~-----~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 117 (309)
|.++|+|.++++++|++..+..+..++.. ....+++|+||+|||||++++.+++.+ +..+..+++.....
T Consensus 2 ~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~-----~~~~~~~~~~~~~~ 76 (324)
T 1hqc_A 2 EDLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL-----GVNLRVTSGPAIEK 76 (324)
T ss_dssp ---CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH-----TCCEEEECTTTCCS
T ss_pred CccccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh-----CCCEEEEeccccCC
Confidence 45789999999999999999988888753 233559999999999999999999998 45566677665444
Q ss_pred hHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc------------------CCceEEEEec
Q 021660 118 IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT------------------KNTRFALICN 179 (309)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~------------------~~~~~i~~~~ 179 (309)
...+...+.. ....+.+|+|||++.+....++.|+.++++.. +...+|++++
T Consensus 77 ~~~l~~~l~~----------~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~ 146 (324)
T 1hqc_A 77 PGDLAAILAN----------SLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATT 146 (324)
T ss_dssp HHHHHHHHTT----------TCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEES
T ss_pred hHHHHHHHHH----------hccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCC
Confidence 3333332221 01257799999999999999999999999753 2467888888
Q ss_pred CCcccchhhhcce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-----CCc
Q 021660 180 QVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-----QQI 253 (309)
Q Consensus 180 ~~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~-----~~i 253 (309)
....+.+.+.+|+ ..+.+.+|+.+++..++...+...+..+++++++.++++++|++|.+.+.++.+...+ +.+
T Consensus 147 ~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i 226 (324)
T 1hqc_A 147 RPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVI 226 (324)
T ss_dssp CCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCC
T ss_pred CcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 8888888999999 7999999999999999999999989999999999999999999999999998876543 368
Q ss_pred CHHHHHhhh
Q 021660 254 TEEAVYLCT 262 (309)
Q Consensus 254 ~~~~v~~~~ 262 (309)
+.+++..++
T Consensus 227 ~~~~~~~~~ 235 (324)
T 1hqc_A 227 TRERALEAL 235 (324)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 888876654
No 18
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.93 E-value=2.5e-24 Score=188.54 Aligned_cols=226 Identities=16% Similarity=0.207 Sum_probs=166.3
Q ss_pred CCCCCCcChhhhcCCCC-ccccccChHHHHH---HHHHHhcCCCC--eEEEECCCCCcHHHHHHHHHHHHccCcccccEE
Q 021660 35 PPDIKASPWVEKYRPQS-LADVAAHRDIVDT---IDRLTSENRLP--HLLLYGPPGTGKTSTILAVARKLYGAQYHNMIL 108 (309)
Q Consensus 35 ~~~~~~~~~~~~~~p~~-~~~~ig~~~~~~~---l~~~~~~~~~~--~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~ 108 (309)
.+......+.++++|.. |++++|++..+.. +...+..+..+ +++|+||||+|||++++.+++.+.+. ..++
T Consensus 25 ~~~~~~l~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~---~~~~ 101 (368)
T 3uk6_A 25 HSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD---TPFT 101 (368)
T ss_dssp CTTCCSCCBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSS---CCEE
T ss_pred hhhhhccCcccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhccc---CCcc
Confidence 33445566788999998 9999999999776 45555665544 69999999999999999999998432 2333
Q ss_pred EEecCC-----C--------------------------------------------------cchHHHHHHHHHhhhccc
Q 021660 109 ELNASD-----D--------------------------------------------------RGIDVVRQQIQDFASTQS 133 (309)
Q Consensus 109 ~~~~~~-----~--------------------------------------------------~~~~~~~~~~~~~~~~~~ 133 (309)
.+++.. . .....++..+........
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 181 (368)
T 3uk6_A 102 AIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWR 181 (368)
T ss_dssp EEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHH
T ss_pred cccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhh
Confidence 333211 0 001222222222221111
Q ss_pred cccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEec------------CCcccchhhhcceeEEEecCCC
Q 021660 134 FSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN------------QVNKIIPALQSRCTRFRFAPLE 201 (309)
Q Consensus 134 ~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~------------~~~~l~~~l~~r~~~i~~~~~~ 201 (309)
..-.....+.+|+|||++.+..+.++.|++.+++.... .++++++ ....+++++.+||..+.|++|+
T Consensus 182 ~~g~~~~~~~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~ 260 (368)
T 3uk6_A 182 EEGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYS 260 (368)
T ss_dssp HHTC---CBCEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCC
T ss_pred hhccccccCceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCC
Confidence 00000002469999999999999999999999876644 4444553 3556889999999889999999
Q ss_pred hHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc-CCHHHHHHHHHHHHhhc-----CCcCHHHHHhhhCC
Q 021660 202 PVHVTERLKHVIEAEGLDVTEGGLAALVRLCN-GDMRKALNILQSTHMAS-----QQITEEAVYLCTGN 264 (309)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~-g~~r~~~~~l~~~~~~~-----~~i~~~~v~~~~~~ 264 (309)
.+++..+++.++...+..+++++++.+++.+. |++|.++++|+.+...+ ..|+.+++..++..
T Consensus 261 ~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 261 EKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp HHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999998 99999999998877643 57999999988864
No 19
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.92 E-value=2.1e-23 Score=171.72 Aligned_cols=210 Identities=14% Similarity=0.210 Sum_probs=161.0
Q ss_pred CCcChhhhcCC-CCcccccc---ChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCC
Q 021660 39 KASPWVEKYRP-QSLADVAA---HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (309)
Q Consensus 39 ~~~~~~~~~~p-~~~~~~ig---~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 114 (309)
...+|..+++| .+|+++++ +...++.+..+.......+++|+||||+|||++++.+++.+...+.. +..+++..
T Consensus 13 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~--~~~~~~~~ 90 (242)
T 3bos_A 13 LQLSLPVHLPDDETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERR--SFYIPLGI 90 (242)
T ss_dssp CCCEEECCCCTTCSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCC--EEEEEGGG
T ss_pred hhcCCCCCCCCCCChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCe--EEEEEHHH
Confidence 34568888888 68999997 35788888888887666779999999999999999999998655433 33344332
Q ss_pred CcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHH--HHHHHHHHHHhcCC-c-eEEEEecCCc----ccch
Q 021660 115 DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDA--QFALRRVIEKYTKN-T-RFALICNQVN----KIIP 186 (309)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~--~~~l~~~l~~~~~~-~-~~i~~~~~~~----~l~~ 186 (309)
... .+ .... ....++.+|+|||++.+.... ++.|+.+++..... . .+|++++... ...+
T Consensus 91 ~~~--~~----~~~~-------~~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~ 157 (242)
T 3bos_A 91 HAS--IS----TALL-------EGLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLP 157 (242)
T ss_dssp GGG--SC----GGGG-------TTGGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCH
T ss_pred HHH--HH----HHHH-------HhccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhh
Confidence 111 00 0000 111256899999999987655 77888888865432 2 4777776443 4458
Q ss_pred hhhcce---eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc----CCcCHHHHH
Q 021660 187 ALQSRC---TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS----QQITEEAVY 259 (309)
Q Consensus 187 ~l~~r~---~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~----~~i~~~~v~ 259 (309)
.+.+|+ ..+.|++|+.+++.+++..++...++.+++++++.+++.++||+|.+.+.++.+...+ +.||.+++.
T Consensus 158 ~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~~~It~~~v~ 237 (242)
T 3bos_A 158 DLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQRKLTIPFVK 237 (242)
T ss_dssp HHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred hhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 899998 8999999999999999999999999999999999999999999999999998877543 569999988
Q ss_pred hhhC
Q 021660 260 LCTG 263 (309)
Q Consensus 260 ~~~~ 263 (309)
+++.
T Consensus 238 ~~l~ 241 (242)
T 3bos_A 238 EMLR 241 (242)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 8764
No 20
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.91 E-value=2.6e-22 Score=173.05 Aligned_cols=208 Identities=17% Similarity=0.227 Sum_probs=158.3
Q ss_pred CcChhhhcCCCCccccccChHHHHHHHHHHhcC-----CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCC
Q 021660 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSEN-----RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (309)
Q Consensus 40 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~-----~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 114 (309)
...|.++++|.++++++|++.+++.+...+..+ ...+++|+||||+||||+++.++..+. ..+...+...
T Consensus 12 ~~~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~-----~~~~~~sg~~ 86 (334)
T 1in4_A 12 YDSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ-----TNIHVTSGPV 86 (334)
T ss_dssp -----CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT-----CCEEEEETTT
T ss_pred HHHHHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC-----CCEEEEechH
Confidence 345899999999999999999999888777542 335699999999999999999999983 3333334333
Q ss_pred CcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc------------------CCceEEE
Q 021660 115 DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT------------------KNTRFAL 176 (309)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~------------------~~~~~i~ 176 (309)
......+...+... ....+++|||++.+.+...+.|+..++... +...++.
T Consensus 87 ~~~~~~l~~~~~~~-----------~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 87 LVKQGDMAAILTSL-----------ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp CCSHHHHHHHHHHC-----------CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred hcCHHHHHHHHHHc-----------cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 22233332222111 135799999999999877788877776431 1234556
Q ss_pred EecCCcccchhhhcce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-----
Q 021660 177 ICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS----- 250 (309)
Q Consensus 177 ~~~~~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~----- 250 (309)
+++....+.+.+++|| ..+.|++++.+++.+++++.++..++.++++++..|++++.|++|.+.++|+.+...+
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~ 235 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKA 235 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCC
Confidence 6788888999999999 5789999999999999999999999999999999999999999999999998765332
Q ss_pred CCcCHHHHHhhhC
Q 021660 251 QQITEEAVYLCTG 263 (309)
Q Consensus 251 ~~i~~~~v~~~~~ 263 (309)
+.||.+++..++.
T Consensus 236 ~~It~~~v~~al~ 248 (334)
T 1in4_A 236 DRINTDIVLKTME 248 (334)
T ss_dssp SSBCHHHHHHHHH
T ss_pred CCcCHHHHHHHHH
Confidence 5799998888774
No 21
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.90 E-value=8.2e-22 Score=173.54 Aligned_cols=242 Identities=17% Similarity=0.196 Sum_probs=165.9
Q ss_pred ChhhhcCCCCccccccChHHHHHHHHHHhc------------CCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEE
Q 021660 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSE------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILE 109 (309)
Q Consensus 42 ~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~ 109 (309)
.|.++++|..|++++|++.+++.+..++.. ....++||+||||||||++|+++++++ +..++.
T Consensus 104 ~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~-----~~~~~~ 178 (389)
T 3vfd_A 104 EIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES-----NATFFN 178 (389)
T ss_dssp TTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT-----TCEEEE
T ss_pred hhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh-----cCcEEE
Confidence 588899999999999999999999988731 223569999999999999999999997 677888
Q ss_pred EecCCCcch------HHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCC-----------HHHHHHHHHHHHHh----
Q 021660 110 LNASDDRGI------DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT-----------KDAQFALRRVIEKY---- 168 (309)
Q Consensus 110 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~-----------~~~~~~l~~~l~~~---- 168 (309)
+++....+. ..+...+..... ..+.+|+|||+|.+. ...+..|+..++..
T Consensus 179 v~~~~l~~~~~g~~~~~~~~~~~~a~~---------~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 249 (389)
T 3vfd_A 179 ISAASLTSKYVGEGEKLVRALFAVARE---------LQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAG 249 (389)
T ss_dssp ECSCCC-------CHHHHHHHHHHHHH---------SSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC---
T ss_pred eeHHHhhccccchHHHHHHHHHHHHHh---------cCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccC
Confidence 887653221 112222222211 146899999999883 23355677777644
Q ss_pred cCCceEEEEecCCcccchhhhcce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHH-HH
Q 021660 169 TKNTRFALICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQ-ST 246 (309)
Q Consensus 169 ~~~~~~i~~~~~~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~-~~ 246 (309)
+...++|+++|....+.+++.+|| ..+.++.|+.++...++..++...+..++++.+..+++.+.|..+..+..|. .+
T Consensus 250 ~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a 329 (389)
T 3vfd_A 250 DDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDA 329 (389)
T ss_dssp --CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 235677888899999999999999 6799999999999999999999999999999999999999998886665553 33
Q ss_pred Hhhc-CCcCHHHHHhhh----CCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 021660 247 HMAS-QQITEEAVYLCT----GNPLPKDIEQISYWLLNESFADSFKRISEMKMRKG 297 (309)
Q Consensus 247 ~~~~-~~i~~~~v~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 297 (309)
...+ ..+....+.... ......++...+..+........+..+.+|...-|
T Consensus 330 ~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~g 385 (389)
T 3vfd_A 330 ALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFG 385 (389)
T ss_dssp TTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHCCCSSCHHHHHHHHHHHHHCC
T ss_pred HHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Confidence 3221 111111111111 11223333344444444434456666777764434
No 22
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.89 E-value=7.7e-22 Score=173.68 Aligned_cols=217 Identities=20% Similarity=0.269 Sum_probs=160.9
Q ss_pred ChhhhcCCCCccccccChHHHHHHHHHHhc----CCCCeEEEECCCCCcHHHHHHHHHHHHccC----cccccEEEEecC
Q 021660 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSE----NRLPHLLLYGPPGTGKTSTILAVARKLYGA----QYHNMILELNAS 113 (309)
Q Consensus 42 ~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~----~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~----~~~~~~~~~~~~ 113 (309)
+|..+|.| ++++|++..++.+..++.. ....+++|+||||+|||++++.+++.+... +....++.+++.
T Consensus 11 ~l~~~~~p---~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 11 VLLPDYVP---DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp HHSTTCCC---SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred hcCCccCC---CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 35556666 7799999999999998853 344569999999999999999999987432 225667778876
Q ss_pred CCcchHHHHHHH-------------------HHhhhccccccCCCCccEEEEEeCCCCCCHH--HHHHHHHHHHHh----
Q 021660 114 DDRGIDVVRQQI-------------------QDFASTQSFSFGVKASVKLVLLDEADAMTKD--AQFALRRVIEKY---- 168 (309)
Q Consensus 114 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~--~~~~l~~~l~~~---- 168 (309)
.......+...+ ..+... +.....+.+|+|||++.+... .++.|..+++..
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~----l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~ 163 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKR----LSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELG 163 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHH----HTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHH----HhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcC
Confidence 543322211111 111110 111124779999999999766 677788888755
Q ss_pred -cCCceEEEEecCC---cccchhhhcce--eEEEecCCChHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHhc---CCHH
Q 021660 169 -TKNTRFALICNQV---NKIIPALQSRC--TRFRFAPLEPVHVTERLKHVIEA--EGLDVTEGGLAALVRLCN---GDMR 237 (309)
Q Consensus 169 -~~~~~~i~~~~~~---~~l~~~l~~r~--~~i~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~l~~i~~~~~---g~~r 237 (309)
+....+|++++.. ..+.+.+.+|+ ..+.|++++.+++..++..++.. .+..+++++++.+++.++ |++|
T Consensus 164 ~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r 243 (387)
T 2v1u_A 164 DRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDAR 243 (387)
T ss_dssp ----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHH
T ss_pred CCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHH
Confidence 4466788888776 56788899998 68999999999999999999876 467889999999999998 9999
Q ss_pred HHHHHHHHHHhhc-----CCcCHHHHHhhhCCC
Q 021660 238 KALNILQSTHMAS-----QQITEEAVYLCTGNP 265 (309)
Q Consensus 238 ~~~~~l~~~~~~~-----~~i~~~~v~~~~~~~ 265 (309)
.+++.++.+...+ ..|+.+++..++...
T Consensus 244 ~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 244 RALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp HHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 9999998877543 569999988877544
No 23
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.89 E-value=1.4e-21 Score=175.30 Aligned_cols=123 Identities=17% Similarity=0.231 Sum_probs=109.1
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEe---------cC----CcccchhhhcceeEEEecCCChHHHHHHH
Q 021660 143 KLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC---------NQ----VNKIIPALQSRCTRFRFAPLEPVHVTERL 209 (309)
Q Consensus 143 ~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~---------~~----~~~l~~~l~~r~~~i~~~~~~~~~~~~~l 209 (309)
+|++|||++.+..+.++.|++.+++++.. .+|+.+ +. +..+++++++||..+.|++++.+++.++|
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 69999999999999999999999998877 677677 43 66888999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHh-cCCHHHHHHHHHHHHhhc-----CCcCHHHHHhhhCCCC
Q 021660 210 KHVIEAEGLDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS-----QQITEEAVYLCTGNPL 266 (309)
Q Consensus 210 ~~~~~~~~~~~~~~~l~~i~~~~-~g~~r~~~~~l~~~~~~~-----~~i~~~~v~~~~~~~~ 266 (309)
+.++..+++.++++++..+++.+ .|++|.++++++.+...+ +.|+.++|..++....
T Consensus 376 ~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~ 438 (456)
T 2c9o_A 376 KIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFY 438 (456)
T ss_dssp HHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHSC
T ss_pred HHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHhc
Confidence 99999999999999999999999 999999999998774332 5799999998876543
No 24
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.89 E-value=2.2e-21 Score=166.45 Aligned_cols=196 Identities=16% Similarity=0.199 Sum_probs=145.9
Q ss_pred ChhhhcCCCCccccccChHHHHHHHHHHh----------c-C-CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEE
Q 021660 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTS----------E-N-RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILE 109 (309)
Q Consensus 42 ~~~~~~~p~~~~~~ig~~~~~~~l~~~~~----------~-~-~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~ 109 (309)
.|...+.+..|++++|++.+++.+..++. . . ...+++|+||||||||++|+++++++ +..++.
T Consensus 7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~-----~~~~~~ 81 (322)
T 3eie_A 7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA-----NSTFFS 81 (322)
T ss_dssp CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH-----TCEEEE
T ss_pred ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH-----CCCEEE
Confidence 36678888899999999999999998872 1 1 23359999999999999999999998 566777
Q ss_pred EecCCC--cchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH-----------HHHHHHHHHHHHh---cCCce
Q 021660 110 LNASDD--RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKY---TKNTR 173 (309)
Q Consensus 110 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~-----------~~~~~l~~~l~~~---~~~~~ 173 (309)
+++... .........+........ ...+.+|+|||+|.+.. ...+.++..++.. .....
T Consensus 82 v~~~~l~~~~~g~~~~~~~~~f~~a~-----~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 156 (322)
T 3eie_A 82 VSSSDLVSKWMGESEKLVKQLFAMAR-----ENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 156 (322)
T ss_dssp EEHHHHHTTTGGGHHHHHHHHHHHHH-----HTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEE
T ss_pred EchHHHhhcccchHHHHHHHHHHHHH-----hcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceE
Confidence 776431 111112222222221111 11568999999998864 2356777777754 34556
Q ss_pred EEEEecCCcccchhhhcce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 021660 174 FALICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQSTH 247 (309)
Q Consensus 174 ~i~~~~~~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g-~~r~~~~~l~~~~ 247 (309)
+|++||.+..+++++.+|| ..+.++.|+.++..++++.++...+..+++..+..+++.+.| +.+.+.++++.+.
T Consensus 157 vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~ 232 (322)
T 3eie_A 157 VLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDAL 232 (322)
T ss_dssp EEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHT
T ss_pred EEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 7778899999999999999 789999999999999999999888888899999999999987 5556666665554
No 25
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.89 E-value=3.1e-21 Score=170.02 Aligned_cols=220 Identities=18% Similarity=0.223 Sum_probs=161.6
Q ss_pred CcChhhhcCCCCccccccChHHHHHHHHHHhc----CCCC--eEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecC
Q 021660 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSE----NRLP--HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 113 (309)
Q Consensus 40 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~----~~~~--~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 113 (309)
..+|..+|.| ++++|++..++.+..++.. .... +++|+||+|+|||++++.+++.+.... ...++.+++.
T Consensus 7 ~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~ 82 (389)
T 1fnn_A 7 DSVFSPSYVP---KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGF 82 (389)
T ss_dssp GGGGSTTCCC---SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETT
T ss_pred HhhcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCc
Confidence 3457778887 6799999999988888765 3333 799999999999999999999985442 3566777765
Q ss_pred CCcchHHH-HHHHHHhhhcccc-c-------------cCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc----CCceE
Q 021660 114 DDRGIDVV-RQQIQDFASTQSF-S-------------FGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT----KNTRF 174 (309)
Q Consensus 114 ~~~~~~~~-~~~~~~~~~~~~~-~-------------~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~----~~~~~ 174 (309)
.......+ ...+..+...... . +....++.+|+|||++.+.......|..+++..+ ....+
T Consensus 83 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~i 162 (389)
T 1fnn_A 83 IYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIAL 162 (389)
T ss_dssp TCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEE
T ss_pred cCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEE
Confidence 54332222 2212211100000 0 0001247799999999998888889988887654 37788
Q ss_pred EEEecCC---cccchhhhccee--EEEecCCChHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHh---------cCCHHH
Q 021660 175 ALICNQV---NKIIPALQSRCT--RFRFAPLEPVHVTERLKHVIEAE--GLDVTEGGLAALVRLC---------NGDMRK 238 (309)
Q Consensus 175 i~~~~~~---~~l~~~l~~r~~--~i~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~l~~i~~~~---------~g~~r~ 238 (309)
|++++.. ..+.+.+.+|+. .+.|+|++.+++.+++..++... ...+++++++.+++.+ +|++|.
T Consensus 163 I~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~ 242 (389)
T 1fnn_A 163 VIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARL 242 (389)
T ss_dssp EEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHH
T ss_pred EEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHH
Confidence 8888876 456777888874 79999999999999999998762 3478999999999999 899999
Q ss_pred HHHHHHHHHhhc-----CCcCHHHHHhhhC
Q 021660 239 ALNILQSTHMAS-----QQITEEAVYLCTG 263 (309)
Q Consensus 239 ~~~~l~~~~~~~-----~~i~~~~v~~~~~ 263 (309)
+++.++.+...+ ..++.+++..++.
T Consensus 243 ~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~ 272 (389)
T 1fnn_A 243 AIDILYRSAYAAQQNGRKHIAPEDVRKSSK 272 (389)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 999998877532 5688888876654
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.88 E-value=6.8e-21 Score=161.79 Aligned_cols=192 Identities=18% Similarity=0.225 Sum_probs=146.1
Q ss_pred ChhhhcCCCCccccccChHHHHHHHHHHhc------------CCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEE
Q 021660 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSE------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILE 109 (309)
Q Consensus 42 ~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~ 109 (309)
.|.+++.+..|++++|++..++.+..++.. ....+++|+||||||||++++.+++.+ ...++.
T Consensus 10 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~-----~~~~~~ 84 (297)
T 3b9p_A 10 EIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC-----SATFLN 84 (297)
T ss_dssp TTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT-----TCEEEE
T ss_pred HhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh-----CCCeEE
Confidence 366788899999999999999999988743 123459999999999999999999997 566777
Q ss_pred EecCCCcc------hHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCC-----------HHHHHHHHHHHHHhcC--
Q 021660 110 LNASDDRG------IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT-----------KDAQFALRRVIEKYTK-- 170 (309)
Q Consensus 110 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~-----------~~~~~~l~~~l~~~~~-- 170 (309)
+++..... ...+...+..... ..+.+|+|||++.+. ......|+..++..+.
T Consensus 85 i~~~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 155 (297)
T 3b9p_A 85 ISAASLTSKYVGDGEKLVRALFAVARH---------MQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNP 155 (297)
T ss_dssp EESTTTSSSSCSCHHHHHHHHHHHHHH---------TCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC---
T ss_pred eeHHHHhhcccchHHHHHHHHHHHHHH---------cCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccC
Confidence 77654321 1122222222211 157899999998874 2345567777776542
Q ss_pred ---CceEEEEecCCcccchhhhcce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHH-HHHHH
Q 021660 171 ---NTRFALICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKAL-NILQS 245 (309)
Q Consensus 171 ---~~~~i~~~~~~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~-~~l~~ 245 (309)
...+|++||.+..+.+++.+|| ..+.++.|+.++...++..++...+..++++.++.+++.+.|..+..+ .+++.
T Consensus 156 ~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~ 235 (297)
T 3b9p_A 156 DGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKD 235 (297)
T ss_dssp ---CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4567778898889999999999 788999999999999999999888888999999999999999887555 44454
Q ss_pred HH
Q 021660 246 TH 247 (309)
Q Consensus 246 ~~ 247 (309)
++
T Consensus 236 a~ 237 (297)
T 3b9p_A 236 AA 237 (297)
T ss_dssp HT
T ss_pred HH
Confidence 43
No 27
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.88 E-value=1.4e-20 Score=163.28 Aligned_cols=192 Identities=18% Similarity=0.208 Sum_probs=140.0
Q ss_pred hhhhcCCCCccccccChHHHHHHHHHHhc-----------CC-CCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEE
Q 021660 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSE-----------NR-LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (309)
Q Consensus 43 ~~~~~~p~~~~~~ig~~~~~~~l~~~~~~-----------~~-~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 110 (309)
+...+.+..|++++|++.+++.+..++.. .. ..+++|+||||||||++|+++++.+ ...++.+
T Consensus 41 ~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~-----~~~~~~v 115 (355)
T 2qp9_X 41 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA-----NSTFFSV 115 (355)
T ss_dssp ------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH-----TCEEEEE
T ss_pred hcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh-----CCCEEEe
Confidence 55667788999999999999999988731 12 2349999999999999999999998 5566666
Q ss_pred ecCCC------cchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHH-----------HHHHHHHHHHHh---cC
Q 021660 111 NASDD------RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD-----------AQFALRRVIEKY---TK 170 (309)
Q Consensus 111 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~-----------~~~~l~~~l~~~---~~ 170 (309)
++... .....+...+..... ..+.+|+|||+|.+... ..+.|+..++.. ..
T Consensus 116 ~~~~l~~~~~g~~~~~~~~~f~~a~~---------~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~ 186 (355)
T 2qp9_X 116 SSSDLVSKWMGESEKLVKQLFAMARE---------NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 186 (355)
T ss_dssp EHHHHHSCC---CHHHHHHHHHHHHH---------TSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---C
T ss_pred eHHHHhhhhcchHHHHHHHHHHHHHH---------cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCC
Confidence 65421 111122222222111 15789999999998732 356777777743 34
Q ss_pred CceEEEEecCCcccchhhhcce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 021660 171 NTRFALICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQSTHM 248 (309)
Q Consensus 171 ~~~~i~~~~~~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g-~~r~~~~~l~~~~~ 248 (309)
.+.+|++||.+..+++++.+|| ..+.+++|+.++...+++.++...+..+++..++.|++.+.| +.+.+.++++.++.
T Consensus 187 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~ 266 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALM 266 (355)
T ss_dssp CEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred CeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 5677778899999999999999 889999999999999999999888777899999999999988 55566666665544
No 28
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2e-20 Score=161.71 Aligned_cols=200 Identities=21% Similarity=0.286 Sum_probs=140.6
Q ss_pred CCCCccccccChHHHHHHHHHHhc------------CCC-CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCC
Q 021660 48 RPQSLADVAAHRDIVDTIDRLTSE------------NRL-PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (309)
Q Consensus 48 ~p~~~~~~ig~~~~~~~l~~~~~~------------~~~-~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 114 (309)
...+|+++.|.++.++.|++.+.. ..+ ..+|||||||||||++|+++|+++ +..++.++++.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~-----~~~f~~v~~s~ 217 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT-----DCKFIRVSGAE 217 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH-----TCEEEEEEGGG
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh-----CCCceEEEhHH
Confidence 345899999999999999887641 222 349999999999999999999998 77788887764
Q ss_pred Cc------chHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHH--------------HHHHHHHHHHHhc--CCc
Q 021660 115 DR------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD--------------AQFALRRVIEKYT--KNT 172 (309)
Q Consensus 115 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~--------------~~~~l~~~l~~~~--~~~ 172 (309)
.. +...++..+...... .+.+|+|||+|.+... ....|+..|+... ...
T Consensus 218 l~sk~vGese~~vr~lF~~Ar~~---------aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V 288 (405)
T 4b4t_J 218 LVQKYIGEGSRMVRELFVMAREH---------APSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNI 288 (405)
T ss_dssp GSCSSTTHHHHHHHHHHHHHHHT---------CSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCE
T ss_pred hhccccchHHHHHHHHHHHHHHh---------CCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCe
Confidence 22 222333333332221 5789999999988521 2345666666433 355
Q ss_pred eEEEEecCCcccchhhhc--ce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC-HHHHHHHHHHHHh
Q 021660 173 RFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGD-MRKALNILQSTHM 248 (309)
Q Consensus 173 ~~i~~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~-~r~~~~~l~~~~~ 248 (309)
.+|++||.++.+++++.+ || ..|+|+.|+.++..++++.+++...+. ++..++.+++.+.|- ...+.+++..++.
T Consensus 289 ~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dvdl~~lA~~t~G~SGADi~~l~~eA~~ 367 (405)
T 4b4t_J 289 KIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGINLRKVAEKMNGCSGADVKGVCTEAGM 367 (405)
T ss_dssp EEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSCCHHHHHHHCCSCCHHHHHHHHHHHHH
T ss_pred EEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 678889999999999988 88 889999999999999998887654432 223478999998773 3344444444443
Q ss_pred hc-----CCcCHHHHHhhh
Q 021660 249 AS-----QQITEEAVYLCT 262 (309)
Q Consensus 249 ~~-----~~i~~~~v~~~~ 262 (309)
.+ ..|+.+++..++
T Consensus 368 ~Air~~~~~vt~~Df~~Al 386 (405)
T 4b4t_J 368 YALRERRIHVTQEDFELAV 386 (405)
T ss_dssp HHHHTTCSBCCHHHHHHHH
T ss_pred HHHHcCCCCcCHHHHHHHH
Confidence 22 356777666554
No 29
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.88 E-value=9.8e-21 Score=164.59 Aligned_cols=195 Identities=15% Similarity=0.190 Sum_probs=142.9
Q ss_pred hhhhcCCCCccccccChHHHHHHHHHHhc------------CCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEE
Q 021660 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSE------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (309)
Q Consensus 43 ~~~~~~p~~~~~~ig~~~~~~~l~~~~~~------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 110 (309)
+.+++.|..|++++|++.+++.+.+++.. ....+++|+||||||||++|+++++.+ ...++.+
T Consensus 74 i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~-----~~~~~~i 148 (357)
T 3d8b_A 74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS-----GATFFSI 148 (357)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT-----TCEEEEE
T ss_pred cccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc-----CCeEEEE
Confidence 34567888999999999999999988752 234459999999999999999999997 5667777
Q ss_pred ecCCCcc--hHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH-----------HHHHHHHHHHHHh----cCCce
Q 021660 111 NASDDRG--IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKY----TKNTR 173 (309)
Q Consensus 111 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~-----------~~~~~l~~~l~~~----~~~~~ 173 (309)
++..... .......+........ ...+.+|+|||+|.+.. ..++.|+..++.. .....
T Consensus 149 ~~~~l~~~~~g~~~~~~~~~~~~a~-----~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~ 223 (357)
T 3d8b_A 149 SASSLTSKWVGEGEKMVRALFAVAR-----CQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRIL 223 (357)
T ss_dssp EGGGGCCSSTTHHHHHHHHHHHHHH-----HTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEE
T ss_pred ehHHhhccccchHHHHHHHHHHHHH-----hcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEE
Confidence 7654221 1111112222111110 11468999999988742 2345666666642 24566
Q ss_pred EEEEecCCcccchhhhcce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 021660 174 FALICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQSTH 247 (309)
Q Consensus 174 ~i~~~~~~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g-~~r~~~~~l~~~~ 247 (309)
+|++||....+.+++.+|| ..+.++.|+.++..+++..++...+..++++.++.+++.+.| ..+.+..+++.+.
T Consensus 224 vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~ 299 (357)
T 3d8b_A 224 VVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREAS 299 (357)
T ss_dssp EEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred EEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 7778899889999999999 688999999999999999999988889999999999999998 4445555555544
No 30
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.87 E-value=1.3e-21 Score=172.13 Aligned_cols=221 Identities=17% Similarity=0.134 Sum_probs=158.2
Q ss_pred CCcChhhhcCCCCccccccChHHHHHHHHHHh----cCCCCeEEEECCCCCcHHHHHHHHHHHHccCc-----c-cccEE
Q 021660 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTS----ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-----Y-HNMIL 108 (309)
Q Consensus 39 ~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~----~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-----~-~~~~~ 108 (309)
+...|..+|.| ++++|++..++.+..++. .....+++|+||+|+|||++++.+++.+.... . ...++
T Consensus 9 ~~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~ 85 (384)
T 2qby_B 9 PKVFIDPLSVF---KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQA 85 (384)
T ss_dssp TTTTTCHHHHC---SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEE
T ss_pred cHhhcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEE
Confidence 34568888888 779999999998886664 34445699999999999999999999874431 2 56677
Q ss_pred EEecCCCc-chH-HHHHHHHHhhhcc---------------ccccCCCCccEEEEEeCCCCCCHHH-HHH-HHHHHHHhc
Q 021660 109 ELNASDDR-GID-VVRQQIQDFASTQ---------------SFSFGVKASVKLVLLDEADAMTKDA-QFA-LRRVIEKYT 169 (309)
Q Consensus 109 ~~~~~~~~-~~~-~~~~~~~~~~~~~---------------~~~~~~~~~~~lliiDe~~~l~~~~-~~~-l~~~l~~~~ 169 (309)
.+++.... ... .+...+..+.... ...+.. .+.+|+|||+|.+.... .+. +..+++..
T Consensus 86 ~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~--~~~vlilDEi~~l~~~~~~~~~l~~l~~~~- 162 (384)
T 2qby_B 86 YVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN--IRAIIYLDEVDTLVKRRGGDIVLYQLLRSD- 162 (384)
T ss_dssp EEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS--SCEEEEEETTHHHHHSTTSHHHHHHHHTSS-
T ss_pred EEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc--CCCEEEEECHHHhccCCCCceeHHHHhcCC-
Confidence 77754322 111 1111121110000 000111 23399999999986542 445 55555444
Q ss_pred CCceEEEEecCC---cccchhhhcce-eEEEecCCChHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHhc---CCHHHHH
Q 021660 170 KNTRFALICNQV---NKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEA--EGLDVTEGGLAALVRLCN---GDMRKAL 240 (309)
Q Consensus 170 ~~~~~i~~~~~~---~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~l~~i~~~~~---g~~r~~~ 240 (309)
....+|++++.. ..+.+.+.+|+ ..+.|+|++.+++.+++..++.. .+..+++++++.+++.++ ||+|.++
T Consensus 163 ~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~ 242 (384)
T 2qby_B 163 ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAV 242 (384)
T ss_dssp SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHH
T ss_pred cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHH
Confidence 577888888876 56788888886 79999999999999999999875 356789999999999998 9999999
Q ss_pred HHHHHHHhhc---CCcCHHHHHhhhCCC
Q 021660 241 NILQSTHMAS---QQITEEAVYLCTGNP 265 (309)
Q Consensus 241 ~~l~~~~~~~---~~i~~~~v~~~~~~~ 265 (309)
+.|+.+...+ ..|+.+++..++...
T Consensus 243 ~~l~~a~~~a~~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 243 NLLFRAAQLASGGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp HHHHHHHHHTTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 9998887654 569999988776543
No 31
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.87 E-value=8.2e-21 Score=162.19 Aligned_cols=187 Identities=20% Similarity=0.275 Sum_probs=142.9
Q ss_pred ccccChHHHHHHHHHHh---------------cCCCCeEEEECCCCCcHHHHHHHHHHHHccCcc--cccEEEEecCCCc
Q 021660 54 DVAAHRDIVDTIDRLTS---------------ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY--HNMILELNASDDR 116 (309)
Q Consensus 54 ~~ig~~~~~~~l~~~~~---------------~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~--~~~~~~~~~~~~~ 116 (309)
+++|++.+++.+.+++. .....+++|+||||||||++++.+++.+...+. ...++.+++....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 69999999998887764 233345999999999999999999999855433 3356666654321
Q ss_pred c--hHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCC---------CHHHHHHHHHHHHHhcCCceEEEEecCCc---
Q 021660 117 G--IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAM---------TKDAQFALRRVIEKYTKNTRFALICNQVN--- 182 (309)
Q Consensus 117 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l---------~~~~~~~l~~~l~~~~~~~~~i~~~~~~~--- 182 (309)
. .......+....... .+.+|+|||++.+ ....++.|+.+++.......+|++++...
T Consensus 112 ~~~~g~~~~~~~~~~~~~--------~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~ 183 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRA--------MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMEN 183 (309)
T ss_dssp CSSTTCHHHHHHHHHHHH--------TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHH
T ss_pred hhcccccHHHHHHHHHhc--------CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHH
Confidence 1 111111112211110 3569999999987 67778999999998877888888886432
Q ss_pred --ccchhhhcce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh--------cCCHHHHHHHHHHHHh
Q 021660 183 --KIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLC--------NGDMRKALNILQSTHM 248 (309)
Q Consensus 183 --~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~--------~g~~r~~~~~l~~~~~ 248 (309)
.+.+.+.+|| ..++|++|+.+++..++..++.+.+..+++++++.+++++ .||+|.+.+.++.+..
T Consensus 184 ~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~ 260 (309)
T 3syl_A 184 FFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARL 260 (309)
T ss_dssp HHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHH
T ss_pred HHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHH
Confidence 3458899999 9999999999999999999999999999999999999974 4999999999988774
No 32
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.86 E-value=2e-20 Score=155.51 Aligned_cols=207 Identities=19% Similarity=0.213 Sum_probs=147.5
Q ss_pred ChhhhcCCCCccccccChHHHHHHHHHHhc------------CCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEE
Q 021660 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSE------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILE 109 (309)
Q Consensus 42 ~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~ 109 (309)
.|.+++.+..|++++|.+..++.+...+.. ..+.+++|+||||+|||++++.+++.+ ...++.
T Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~-----~~~~~~ 75 (257)
T 1lv7_A 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA-----KVPFFT 75 (257)
T ss_dssp CEEECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH-----TCCEEE
T ss_pred CCCccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc-----CCCEEE
Confidence 478889999999999999999987766432 123459999999999999999999997 445666
Q ss_pred EecCCCc------chHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH--------------HHHHHHHHHHHHh-
Q 021660 110 LNASDDR------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK--------------DAQFALRRVIEKY- 168 (309)
Q Consensus 110 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~--------------~~~~~l~~~l~~~- 168 (309)
+++.... ....+...+..... ..+.+++|||+|.+.. ...+.++..++..
T Consensus 76 i~~~~~~~~~~~~~~~~~~~~~~~a~~---------~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (257)
T 1lv7_A 76 ISGSDFVEMFVGVGASRVRDMFEQAKK---------AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE 146 (257)
T ss_dssp ECSCSSTTSCCCCCHHHHHHHHHHHHT---------TCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC
T ss_pred EeHHHHHHHhhhhhHHHHHHHHHHHHH---------cCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc
Confidence 6665421 12223333332211 1467999999976642 2334555555543
Q ss_pred -cCCceEEEEecCCcccchhhhc--ce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC-CHHHHHHHH
Q 021660 169 -TKNTRFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNIL 243 (309)
Q Consensus 169 -~~~~~~i~~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g-~~r~~~~~l 243 (309)
.....+|+++|....+++++.+ || ..+.+++|+.++..++++.++++..+. ++..+..++..+.| ++|.+.+++
T Consensus 147 ~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~-~~~~~~~la~~~~G~~~~dl~~l~ 225 (257)
T 1lv7_A 147 GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLANLV 225 (257)
T ss_dssp SSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHH
T ss_pred cCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCC-ccccHHHHHHHcCCCCHHHHHHHH
Confidence 3356677788888888888887 77 778999999999999998887654322 23336788899999 999999998
Q ss_pred HHHHhhc-----CCcCHHHHHhhhC
Q 021660 244 QSTHMAS-----QQITEEAVYLCTG 263 (309)
Q Consensus 244 ~~~~~~~-----~~i~~~~v~~~~~ 263 (309)
+.+...+ ..|+.+++..++.
T Consensus 226 ~~a~~~a~~~~~~~i~~~~~~~a~~ 250 (257)
T 1lv7_A 226 NEAALFAARGNKRVVSMVEFEKAKD 250 (257)
T ss_dssp HHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccHHHHHHHHH
Confidence 8776543 4688888776653
No 33
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.86 E-value=1.1e-20 Score=168.34 Aligned_cols=216 Identities=11% Similarity=0.174 Sum_probs=155.8
Q ss_pred cCCC-Cccccc-c--ChHHHHHHHHHHhcCC-CCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHH
Q 021660 47 YRPQ-SLADVA-A--HRDIVDTIDRLTSENR-LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVV 121 (309)
Q Consensus 47 ~~p~-~~~~~i-g--~~~~~~~l~~~~~~~~-~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (309)
+.|. +|++++ | +......+..+..... ..+++|+||+|+|||++++.+++.+........++.+++... ...+
T Consensus 98 l~~~~tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~--~~~~ 175 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF--LNDL 175 (440)
T ss_dssp CCTTCSGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH--HHHH
T ss_pred CCCCCChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH--HHHH
Confidence 4454 688888 5 4445556666666543 456999999999999999999999855433455566655431 1112
Q ss_pred HHHHHHhh-hccccccCCCCccEEEEEeCCCCCCH--HHHHHHHHHHHHhc-CCceEEEEecCCc----ccchhhhcce-
Q 021660 122 RQQIQDFA-STQSFSFGVKASVKLVLLDEADAMTK--DAQFALRRVIEKYT-KNTRFALICNQVN----KIIPALQSRC- 192 (309)
Q Consensus 122 ~~~~~~~~-~~~~~~~~~~~~~~lliiDe~~~l~~--~~~~~l~~~l~~~~-~~~~~i~~~~~~~----~l~~~l~~r~- 192 (309)
...+.... ......+. ..+.+|+|||++.+.. ..++.|+..++... ....+|++++... .+.+.+.+|+
T Consensus 176 ~~~~~~~~~~~~~~~~~--~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~ 253 (440)
T 2z4s_A 176 VDSMKEGKLNEFREKYR--KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQ 253 (440)
T ss_dssp HHHHHTTCHHHHHHHHT--TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHH
T ss_pred HHHHHcccHHHHHHHhc--CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhcc
Confidence 21111100 00000011 0467999999999985 67888888888754 3456666666533 2678999998
Q ss_pred --eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc----CCcCHHHHHhhhCCCC
Q 021660 193 --TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS----QQITEEAVYLCTGNPL 266 (309)
Q Consensus 193 --~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~----~~i~~~~v~~~~~~~~ 266 (309)
..+.+.+|+.+++..++.+.+...++.+++++++.|++.++||+|.+.+.|+.+...+ ..||.+++.+++....
T Consensus 254 ~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 254 MGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKDFI 333 (440)
T ss_dssp SSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTSTTT
T ss_pred CCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999999999999999999998877543 5699999998887644
No 34
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=7.8e-20 Score=158.43 Aligned_cols=202 Identities=20% Similarity=0.271 Sum_probs=139.8
Q ss_pred hhcCCCCccccccChHHHHHHHHHHhc------------CCC-CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEe
Q 021660 45 EKYRPQSLADVAAHRDIVDTIDRLTSE------------NRL-PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELN 111 (309)
Q Consensus 45 ~~~~p~~~~~~ig~~~~~~~l~~~~~~------------~~~-~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 111 (309)
+.-...+|+++.|.++.++.|.+.+.. ..+ ..+|||||||||||++|+++|.++ +..++.++
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~-----~~~fi~v~ 248 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT-----SATFLRIV 248 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH-----TCEEEEEE
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh-----CCCEEEEE
Confidence 333455899999999999988887641 122 349999999999999999999998 77777777
Q ss_pred cCCCc------chHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH-----------H---HHHHHHHHHHHhc--
Q 021660 112 ASDDR------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------D---AQFALRRVIEKYT-- 169 (309)
Q Consensus 112 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~-----------~---~~~~l~~~l~~~~-- 169 (309)
..... +...++..+...... .+.||+|||+|.+.. . ....|+..++...
T Consensus 249 ~s~l~sk~vGesek~ir~lF~~Ar~~---------aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~ 319 (437)
T 4b4t_I 249 GSELIQKYLGDGPRLCRQIFKVAGEN---------APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR 319 (437)
T ss_dssp SGGGCCSSSSHHHHHHHHHHHHHHHT---------CSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS
T ss_pred HHHhhhccCchHHHHHHHHHHHHHhc---------CCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC
Confidence 65421 122233333322221 578999999998752 1 2344555555433
Q ss_pred CCceEEEEecCCcccchhhhc--ce-eEEEecCCChHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCC-HHHHHHHHH
Q 021660 170 KNTRFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTE-GGLAALVRLCNGD-MRKALNILQ 244 (309)
Q Consensus 170 ~~~~~i~~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~l~~i~~~~~g~-~r~~~~~l~ 244 (309)
....+|++||.++.+++++++ || ..|+|+.|+.++..++++.+++... +++ ..++.|++.+.|- -..+.+++.
T Consensus 320 ~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~--l~~dvdl~~LA~~T~GfSGADI~~l~~ 397 (437)
T 4b4t_I 320 GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN--LSEDVNLETLVTTKDDLSGADIQAMCT 397 (437)
T ss_dssp SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC--BCSCCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC--CCCcCCHHHHHHhCCCCCHHHHHHHHH
Confidence 355788899999999999988 88 7799999999999999998876543 333 2478899998763 334444444
Q ss_pred HHHhhc-----CCcCHHHHHhhh
Q 021660 245 STHMAS-----QQITEEAVYLCT 262 (309)
Q Consensus 245 ~~~~~~-----~~i~~~~v~~~~ 262 (309)
.++..+ ..|+.+++..++
T Consensus 398 eA~~~Air~~~~~It~eDf~~Al 420 (437)
T 4b4t_I 398 EAGLLALRERRMQVTAEDFKQAK 420 (437)
T ss_dssp HHHHHHHHTTCSCBCHHHHHHHH
T ss_pred HHHHHHHHcCCCccCHHHHHHHH
Confidence 444322 357777766554
No 35
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.86 E-value=4.1e-20 Score=156.06 Aligned_cols=205 Identities=19% Similarity=0.228 Sum_probs=143.7
Q ss_pred CCCCccccccChHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCC
Q 021660 48 RPQSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (309)
Q Consensus 48 ~p~~~~~~ig~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 114 (309)
.+..|++++|.+..++.+..++.. ....+++|+||||||||++++.+++.+ ...++.+++..
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~-----~~~~~~v~~~~ 86 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET-----NATFIRVVGSE 86 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT-----TCEEEEEEGGG
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh-----CCCEEEEehHH
Confidence 345789999999999999888753 234559999999999999999999997 55666666543
Q ss_pred Cc--chHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCC-----------CHHHHHHHHHHHHHh-----cCCceEEE
Q 021660 115 DR--GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAM-----------TKDAQFALRRVIEKY-----TKNTRFAL 176 (309)
Q Consensus 115 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l-----------~~~~~~~l~~~l~~~-----~~~~~~i~ 176 (309)
.. ........+......... ..+.+|+|||+|.+ ....+..+..+++.. .....+|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ 161 (285)
T 3h4m_A 87 LVKKFIGEGASLVKDIFKLAKE-----KAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIG 161 (285)
T ss_dssp GCCCSTTHHHHHHHHHHHHHHH-----TCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEE
T ss_pred HHHhccchHHHHHHHHHHHHHH-----cCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEE
Confidence 21 111112222221111110 14689999999987 344556666666643 23567788
Q ss_pred EecCCcccchhhhc--ce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC-CHHHHHHHHHHHHhhc--
Q 021660 177 ICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQSTHMAS-- 250 (309)
Q Consensus 177 ~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g-~~r~~~~~l~~~~~~~-- 250 (309)
++|....+.+++.+ || ..+.+++|+.++..++++.++...+.. .+..+..+++.+.| .++.+..+++.+...+
T Consensus 162 ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~ 240 (285)
T 3h4m_A 162 ATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIAKMTEGCVGAELKAICTEAGMNAIR 240 (285)
T ss_dssp ECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred eCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 88988999999988 88 689999999999999999988765543 33347888888877 5666666665554432
Q ss_pred ---CCcCHHHHHhhhC
Q 021660 251 ---QQITEEAVYLCTG 263 (309)
Q Consensus 251 ---~~i~~~~v~~~~~ 263 (309)
..|+.+++..++.
T Consensus 241 ~~~~~I~~~d~~~al~ 256 (285)
T 3h4m_A 241 ELRDYVTMDDFRKAVE 256 (285)
T ss_dssp TTCSSBCHHHHHHHHH
T ss_pred hccCcCCHHHHHHHHH
Confidence 4688888877664
No 36
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.86 E-value=3.9e-19 Score=152.18 Aligned_cols=189 Identities=19% Similarity=0.197 Sum_probs=139.1
Q ss_pred hcCCCCccccccChHHHHHHHHHHhc-----------C-CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecC
Q 021660 46 KYRPQSLADVAAHRDIVDTIDRLTSE-----------N-RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 113 (309)
Q Consensus 46 ~~~p~~~~~~ig~~~~~~~l~~~~~~-----------~-~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 113 (309)
.+.+..|++++|.+.+++.+.+.+.. . ...+++|+||||||||++|+++++++. ...++.+++.
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~----~~~~~~i~~~ 80 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN----NSTFFSISSS 80 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT----SCEEEEEECC
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC----CCcEEEEEhH
Confidence 34566899999999999999887631 1 224599999999999999999999972 3455666655
Q ss_pred CCc------chHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH-----------HHHHHHHHHHHHh---cCCce
Q 021660 114 DDR------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKY---TKNTR 173 (309)
Q Consensus 114 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~-----------~~~~~l~~~l~~~---~~~~~ 173 (309)
... ....+...+..... ..+.+|+|||+|.+.. ...+.|+..++.. .....
T Consensus 81 ~l~~~~~g~~~~~~~~lf~~a~~---------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~ 151 (322)
T 1xwi_A 81 DLVSKWLGESEKLVKNLFQLARE---------NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 151 (322)
T ss_dssp SSCCSSCCSCHHHHHHHHHHHHH---------TSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEE
T ss_pred HHHhhhhhHHHHHHHHHHHHHHh---------cCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEE
Confidence 321 12223333322221 1578999999998832 2345667777653 34566
Q ss_pred EEEEecCCcccchhhhcce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 021660 174 FALICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGD-MRKALNILQSTH 247 (309)
Q Consensus 174 ~i~~~~~~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~-~r~~~~~l~~~~ 247 (309)
+|++||.+..+++++.+|| ..+.++.|+.++..++++.++...+..+++..+..|++.+.|. .+.+..+++.++
T Consensus 152 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~ 227 (322)
T 1xwi_A 152 VLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDAL 227 (322)
T ss_dssp EEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 7778899999999999999 7899999999999999999998887788999999999999886 444555555544
No 37
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.86 E-value=9.8e-20 Score=151.76 Aligned_cols=186 Identities=20% Similarity=0.193 Sum_probs=129.3
Q ss_pred CCccccccChHHHHHHHHHHhc------------CCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcc
Q 021660 50 QSLADVAAHRDIVDTIDRLTSE------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG 117 (309)
Q Consensus 50 ~~~~~~ig~~~~~~~l~~~~~~------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 117 (309)
..|++++|.+..++.+.+++.. ....+++|+||||||||++++.+++++ ...++.+++.....
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~-----~~~~~~~~~~~~~~ 77 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA-----QVPFLAMAGAEFVE 77 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH-----TCCEEEEETTTTSS
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCEEEechHHHHh
Confidence 4688999999999988777531 223459999999999999999999998 55677777654311
Q ss_pred ------hHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH------------HHHHHHHHHHHHh-----cCCceE
Q 021660 118 ------IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK------------DAQFALRRVIEKY-----TKNTRF 174 (309)
Q Consensus 118 ------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~------------~~~~~l~~~l~~~-----~~~~~~ 174 (309)
...+...+..... ..+.+|+|||+|.+.. .....+..+++.. +....+
T Consensus 78 ~~~~~~~~~~~~~~~~a~~---------~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~v 148 (262)
T 2qz4_A 78 VIGGLGAARVRSLFKEARA---------RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIV 148 (262)
T ss_dssp SSTTHHHHHHHHHHHHHHH---------TCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEE
T ss_pred hccChhHHHHHHHHHHHHh---------cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEE
Confidence 1122222222211 1468999999999842 2223344444432 235677
Q ss_pred EEEecCCcccchhhhc--ce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHhcCC-HHHHHHHHHHHHhh
Q 021660 175 ALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGG-LAALVRLCNGD-MRKALNILQSTHMA 249 (309)
Q Consensus 175 i~~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-l~~i~~~~~g~-~r~~~~~l~~~~~~ 249 (309)
|+++|....+++++.+ || ..+.+++|+.++..++++.++...+...+.+. +..+++.+.|. .+.+.++++.++..
T Consensus 149 i~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~ 228 (262)
T 2qz4_A 149 LASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALH 228 (262)
T ss_dssp EEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC
T ss_pred EecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 7788888888889988 88 78999999999999999999999888777664 57888888775 45666677666544
No 38
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1e-19 Score=159.72 Aligned_cols=199 Identities=18% Similarity=0.215 Sum_probs=138.8
Q ss_pred CCCccccccChHHHHHHHHHHhc------------CCC-CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCC
Q 021660 49 PQSLADVAAHRDIVDTIDRLTSE------------NRL-PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115 (309)
Q Consensus 49 p~~~~~~ig~~~~~~~l~~~~~~------------~~~-~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 115 (309)
..+|+++.|.++.++.|...+.. ..+ ..+|||||||||||++|+++|+++ +..++.++++..
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~-----~~~~~~v~~s~l 251 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI-----GANFIFSPASGI 251 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH-----TCEEEEEEGGGT
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh-----CCCEEEEehhhh
Confidence 34799999999999998887642 222 349999999999999999999998 677777776543
Q ss_pred c------chHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH--------------HHHHHHHHHHHHhc--CCce
Q 021660 116 R------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK--------------DAQFALRRVIEKYT--KNTR 173 (309)
Q Consensus 116 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~--------------~~~~~l~~~l~~~~--~~~~ 173 (309)
. +...++..+..... ..+.||+|||+|.+.. .....|+..|+... ..+.
T Consensus 252 ~sk~~Gese~~ir~~F~~A~~---------~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vi 322 (437)
T 4b4t_L 252 VDKYIGESARIIREMFAYAKE---------HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTK 322 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHH---------SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSE
T ss_pred ccccchHHHHHHHHHHHHHHh---------cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeE
Confidence 2 12222332222221 1578999999998852 12345666666443 3467
Q ss_pred EEEEecCCcccchhhhcc--e-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC-HHHHHHHHHHHHhh
Q 021660 174 FALICNQVNKIIPALQSR--C-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGD-MRKALNILQSTHMA 249 (309)
Q Consensus 174 ~i~~~~~~~~l~~~l~~r--~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~-~r~~~~~l~~~~~~ 249 (309)
+|++||.++.++++++++ | ..|+|+.|+.++..++++.+++..... ++..++.+++.+.|- ...+.+++..++..
T Consensus 323 vI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t~G~sGADi~~l~~eA~~~ 401 (437)
T 4b4t_L 323 IIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNGADIRNCATEAGFF 401 (437)
T ss_dssp EEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHTCCSCCHHHHHHHHHHHHHH
T ss_pred EEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 888999999999999875 6 779999999999999999888765432 223478899988763 33444444444432
Q ss_pred c-----CCcCHHHHHhhh
Q 021660 250 S-----QQITEEAVYLCT 262 (309)
Q Consensus 250 ~-----~~i~~~~v~~~~ 262 (309)
+ ..|+.+++..++
T Consensus 402 air~~~~~i~~~d~~~Al 419 (437)
T 4b4t_L 402 AIRDDRDHINPDDLMKAV 419 (437)
T ss_dssp HHHTTCSSBCHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHH
Confidence 2 457777666554
No 39
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=4.4e-20 Score=161.92 Aligned_cols=202 Identities=19% Similarity=0.259 Sum_probs=140.1
Q ss_pred CCCCccccccChHHHHHHHHHHh------------cCC-CCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCC
Q 021660 48 RPQSLADVAAHRDIVDTIDRLTS------------ENR-LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (309)
Q Consensus 48 ~p~~~~~~ig~~~~~~~l~~~~~------------~~~-~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 114 (309)
.+.+|+++.|.++.++.|...+. +.+ +..+|||||||||||++|+++|+++ +..++.++...
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~-----~~~f~~v~~s~ 250 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT-----NATFLKLAAPQ 250 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH-----TCEEEEEEGGG
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh-----CCCEEEEehhh
Confidence 34479999999999999887653 122 3349999999999999999999998 77778777654
Q ss_pred Cc------chHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH-----------HH---HHHHHHHHHHhc--CCc
Q 021660 115 DR------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DA---QFALRRVIEKYT--KNT 172 (309)
Q Consensus 115 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~-----------~~---~~~l~~~l~~~~--~~~ 172 (309)
.. +...++..+...... .+.||+|||+|.+.. .. ...|+..|+... ...
T Consensus 251 l~~~~vGese~~ir~lF~~A~~~---------aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~V 321 (434)
T 4b4t_M 251 LVQMYIGEGAKLVRDAFALAKEK---------APTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRV 321 (434)
T ss_dssp GCSSCSSHHHHHHHHHHHHHHHH---------CSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSS
T ss_pred hhhcccchHHHHHHHHHHHHHhc---------CCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCE
Confidence 21 122233333322221 578999999987631 11 234555555433 345
Q ss_pred eEEEEecCCcccchhhhc--ce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 021660 173 RFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQSTHM 248 (309)
Q Consensus 173 ~~i~~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g-~~r~~~~~l~~~~~ 248 (309)
.+|++||.++.+++++.+ || ..|+|+.|+.++..++++.+++..... ++-.++.|++.+.| +...+.+++..++.
T Consensus 322 iVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~sGADi~~l~~eA~~ 400 (434)
T 4b4t_M 322 KVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD-DDINWQELARSTDEFNGAQLKAVTVEAGM 400 (434)
T ss_dssp EEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC-SCCCHHHHHHHCSSCCHHHHHHHHHHHHH
T ss_pred EEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 677789999999999987 88 789999999999999999888765432 12237889999876 34444444444443
Q ss_pred hc-----CCcCHHHHHhhhCC
Q 021660 249 AS-----QQITEEAVYLCTGN 264 (309)
Q Consensus 249 ~~-----~~i~~~~v~~~~~~ 264 (309)
.+ ..|+.+++..++..
T Consensus 401 ~a~r~~~~~i~~~Df~~Al~~ 421 (434)
T 4b4t_M 401 IALRNGQSSVKHEDFVEGISE 421 (434)
T ss_dssp HHHHHTCSSBCHHHHHHHHHS
T ss_pred HHHHcCCCCcCHHHHHHHHHH
Confidence 22 46788877776643
No 40
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.85 E-value=1.7e-20 Score=160.26 Aligned_cols=208 Identities=19% Similarity=0.261 Sum_probs=145.5
Q ss_pred cccccChHHHHHHHHHHhc--------------CCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcc-
Q 021660 53 ADVAAHRDIVDTIDRLTSE--------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG- 117 (309)
Q Consensus 53 ~~~ig~~~~~~~l~~~~~~--------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~- 117 (309)
++++|++.+++.+...+.. ....+++|+||||||||++++.+++.+ ...++.+++.....
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l-----~~~~~~i~~~~~~~~ 89 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA-----NAPFIKVEATKFTEV 89 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH-----TCCEEEEEGGGGSSC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCEEEEcchhcccC
Confidence 4589999999998887754 234569999999999999999999998 44566666543211
Q ss_pred ---hHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHH------------HHHHHHHHHHh----------cCCc
Q 021660 118 ---IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDA------------QFALRRVIEKY----------TKNT 172 (309)
Q Consensus 118 ---~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~------------~~~l~~~l~~~----------~~~~ 172 (309)
.......+..........+.....+.+|+|||++.+.... ++.|+.+++.. ....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~ 169 (310)
T 1ofh_A 90 GYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHI 169 (310)
T ss_dssp CSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTC
T ss_pred CccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcE
Confidence 0000111222111110000000136799999999997554 78899999863 2345
Q ss_pred eEEEEe----cCCcccchhhhcce-eEEEecCCChHHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHHh--
Q 021660 173 RFALIC----NQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKH-----------VIEAEGL--DVTEGGLAALVRLC-- 232 (309)
Q Consensus 173 ~~i~~~----~~~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~-----------~~~~~~~--~~~~~~l~~i~~~~-- 232 (309)
.+|+++ +....+.+++.+|| ..+.|++|+.+++..++++ .+...+. .+++++++.|++++
T Consensus 170 ~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~ 249 (310)
T 1ofh_A 170 LFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFR 249 (310)
T ss_dssp EEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHH
T ss_pred EEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhh
Confidence 566664 34567889999999 6799999999999999883 2333453 68999999999998
Q ss_pred ------cCCHHHHHHHHHHHHhh-----c---C---CcCHHHHHhhhCCC
Q 021660 233 ------NGDMRKALNILQSTHMA-----S---Q---QITEEAVYLCTGNP 265 (309)
Q Consensus 233 ------~g~~r~~~~~l~~~~~~-----~---~---~i~~~~v~~~~~~~ 265 (309)
.|++|.+.+.++.+... . + .|+.+++..++...
T Consensus 250 ~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 250 VNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp HHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSS
T ss_pred hcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhh
Confidence 79999999999886521 1 1 38899998888654
No 41
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.5e-19 Score=158.13 Aligned_cols=198 Identities=20% Similarity=0.308 Sum_probs=136.6
Q ss_pred CCccccccChHHHHHHHHHHh------------cC-CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCc
Q 021660 50 QSLADVAAHRDIVDTIDRLTS------------EN-RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR 116 (309)
Q Consensus 50 ~~~~~~ig~~~~~~~l~~~~~------------~~-~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 116 (309)
.+|+++.|.++.++.|++.+. +. .+..+|||||||||||++|+++|+++ +..++.++.....
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~-----~~~fi~vs~s~L~ 280 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT-----DATFIRVIGSELV 280 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH-----TCEEEEEEGGGGC
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc-----CCCeEEEEhHHhh
Confidence 479999999999999988753 11 23349999999999999999999998 7777777765421
Q ss_pred ------chHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH-----------H---HHHHHHHHHHHhc--CCceE
Q 021660 117 ------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------D---AQFALRRVIEKYT--KNTRF 174 (309)
Q Consensus 117 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~-----------~---~~~~l~~~l~~~~--~~~~~ 174 (309)
+...++..+...... .+.||+|||+|.+.. . ....++..|+... ..+.+
T Consensus 281 sk~vGesek~ir~lF~~Ar~~---------aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViV 351 (467)
T 4b4t_H 281 QKYVGEGARMVRELFEMARTK---------KACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKV 351 (467)
T ss_dssp CCSSSHHHHHHHHHHHHHHHT---------CSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEE
T ss_pred cccCCHHHHHHHHHHHHHHhc---------CCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEE
Confidence 122333333322221 578999999998852 1 1234445555332 34567
Q ss_pred EEEecCCcccchhhhc--ce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC-HHHHHHHHHHHHhhc
Q 021660 175 ALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGD-MRKALNILQSTHMAS 250 (309)
Q Consensus 175 i~~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~-~r~~~~~l~~~~~~~ 250 (309)
|++||.++.+++++++ || ..|+|+.|+.++..++|+.+++...+. .+-.++.|++.+.|- -..+.+++..++..+
T Consensus 352 IaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~-~dvdl~~LA~~T~GfSGADI~~l~~eAa~~A 430 (467)
T 4b4t_H 352 MFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVE-RGIRWELISRLCPNSTGAELRSVCTEAGMFA 430 (467)
T ss_dssp EEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHHCCSCCHHHHHHHHHHHHHHH
T ss_pred EeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 8889999999999988 88 889999999999999999887654332 122478899998773 333444444443322
Q ss_pred -----CCcCHHHHHhhh
Q 021660 251 -----QQITEEAVYLCT 262 (309)
Q Consensus 251 -----~~i~~~~v~~~~ 262 (309)
..++.+++..++
T Consensus 431 ir~~~~~it~~Df~~Al 447 (467)
T 4b4t_H 431 IRARRKVATEKDFLKAV 447 (467)
T ss_dssp HHHTCSSBCHHHHHHHH
T ss_pred HHcCCCccCHHHHHHHH
Confidence 456776665544
No 42
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.85 E-value=2e-19 Score=151.95 Aligned_cols=201 Identities=10% Similarity=0.095 Sum_probs=141.1
Q ss_pred hhhhcCCCCccccccChHHHHHHHH----HHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCc-----ccccEEEEecC
Q 021660 43 WVEKYRPQSLADVAAHRDIVDTIDR----LTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-----YHNMILELNAS 113 (309)
Q Consensus 43 ~~~~~~p~~~~~~ig~~~~~~~l~~----~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-----~~~~~~~~~~~ 113 (309)
+.+.|.|... +.+++..+..+.. .+..+.+++++|+||||||||++++.+++++.... ....++.+++.
T Consensus 12 l~~~~~~~~~--L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~ 89 (318)
T 3te6_A 12 IRESLQKREL--LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDAL 89 (318)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETT
T ss_pred hhhccCCccc--cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecc
Confidence 3345555332 7788777776654 45567778899999999999999999999995322 14578888887
Q ss_pred CCcchHHHHHHHH-Hh-----------------hhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHh---cCCc
Q 021660 114 DDRGIDVVRQQIQ-DF-----------------ASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY---TKNT 172 (309)
Q Consensus 114 ~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~---~~~~ 172 (309)
.......+...+. ++ ..... .....+.+++|||+|.+. .++.|+.+++.. ..+.
T Consensus 90 ~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~---~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~ 164 (318)
T 3te6_A 90 ELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVP---KAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKL 164 (318)
T ss_dssp CCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSC---GGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCE
T ss_pred ccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhh---hccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcE
Confidence 6433322221111 11 11100 012256799999999998 567777777643 2345
Q ss_pred eEEEEecCCcc----cchhhhcce--eEEEecCCChHHHHHHHHHHHHHcCC----------------------------
Q 021660 173 RFALICNQVNK----IIPALQSRC--TRFRFAPLEPVHVTERLKHVIEAEGL---------------------------- 218 (309)
Q Consensus 173 ~~i~~~~~~~~----l~~~l~~r~--~~i~~~~~~~~~~~~~l~~~~~~~~~---------------------------- 218 (309)
.+|+++|..+. +.+.+.+|+ .++.|+|++.+|+.+++++++....-
T Consensus 165 ~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (318)
T 3te6_A 165 SIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPD 244 (318)
T ss_dssp EEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CT
T ss_pred EEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccc
Confidence 67777877653 345567787 67999999999999999999987421
Q ss_pred -------CCCHHHHHHHHH---HhcCCHHHHHHHHHHHHhhc
Q 021660 219 -------DVTEGGLAALVR---LCNGDMRKALNILQSTHMAS 250 (309)
Q Consensus 219 -------~~~~~~l~~i~~---~~~g~~r~~~~~l~~~~~~~ 250 (309)
.+++++++.+++ ...||.|.++++|+.+...+
T Consensus 245 ~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~a 286 (318)
T 3te6_A 245 NVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEAAVEIS 286 (318)
T ss_dssp TEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred cccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHH
Confidence 369999999999 56899999999999887654
No 43
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.85 E-value=2.8e-20 Score=159.89 Aligned_cols=203 Identities=13% Similarity=0.173 Sum_probs=143.0
Q ss_pred Cccccc-c--ChHHHHHHHHHHhcCC--CCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHH
Q 021660 51 SLADVA-A--HRDIVDTIDRLTSENR--LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQI 125 (309)
Q Consensus 51 ~~~~~i-g--~~~~~~~l~~~~~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (309)
+|++++ | +......+..++.... ..+++|+||||+|||++++.+++.+... +..++.+++... ...+...+
T Consensus 9 ~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~~~~--~~~~~~~~ 84 (324)
T 1l8q_A 9 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSADDF--AQAMVEHL 84 (324)
T ss_dssp CSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEHHHH--HHHHHHHH
T ss_pred CcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEHHHH--HHHHHHHH
Confidence 567776 4 5555667777776652 3459999999999999999999998544 344555554321 11111111
Q ss_pred HHhh-hccccccCCCCccEEEEEeCCCCCCH--HHHHHHHHHHHHhc-CCceEEEEecCCc----ccchhhhcce---eE
Q 021660 126 QDFA-STQSFSFGVKASVKLVLLDEADAMTK--DAQFALRRVIEKYT-KNTRFALICNQVN----KIIPALQSRC---TR 194 (309)
Q Consensus 126 ~~~~-~~~~~~~~~~~~~~lliiDe~~~l~~--~~~~~l~~~l~~~~-~~~~~i~~~~~~~----~l~~~l~~r~---~~ 194 (309)
.... ......+ ..+.+|+|||++.+.. ..+..++.+++... ....+|++++... .+.+.+.+|+ ..
T Consensus 85 ~~~~~~~~~~~~---~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~ 161 (324)
T 1l8q_A 85 KKGTINEFRNMY---KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGIL 161 (324)
T ss_dssp HHTCHHHHHHHH---HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEE
T ss_pred HcCcHHHHHHHh---cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceE
Confidence 1100 0000000 1367999999999885 66778888887643 3456666665432 5778999998 78
Q ss_pred EEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHhh-------c--CCc-CHHHHHhhh
Q 021660 195 FRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-------S--QQI-TEEAVYLCT 262 (309)
Q Consensus 195 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~-------~--~~i-~~~~v~~~~ 262 (309)
+.++| +.++...++...+...++.+++++++.+++.+ ||+|.+.+.++.+... . ..+ +.+++.+++
T Consensus 162 i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~ 237 (324)
T 1l8q_A 162 VEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKLIKLKGFEGLERKERKERDKLMQIVEFV 237 (324)
T ss_dssp EECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHHHHHHHHHHcCHHHhccccccCCCCHHHHHHHH
Confidence 99999 99999999999999999999999999999999 9999999999887765 1 236 666666555
No 44
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.85 E-value=1.3e-20 Score=165.62 Aligned_cols=214 Identities=21% Similarity=0.326 Sum_probs=149.9
Q ss_pred ChhhhcCCCCccccccChHHHHHHHHHHhc----CCCCeEEEECCCCCcHHHHHHHHHHHHccCcc-cccEEEEecCCCc
Q 021660 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSE----NRLPHLLLYGPPGTGKTSTILAVARKLYGAQY-HNMILELNASDDR 116 (309)
Q Consensus 42 ~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~----~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~-~~~~~~~~~~~~~ 116 (309)
+|..+|.| ++++|++..++.+..++.. .....++|+||+|+|||++++.+++.+..... ...++.+++....
T Consensus 12 ~l~~~~~p---~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~ 88 (386)
T 2qby_A 12 YLLPDYIP---DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID 88 (386)
T ss_dssp GGSSSCCC---SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC
T ss_pred hCCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC
Confidence 34455665 6789999999999998873 34456999999999999999999998743311 3455555543211
Q ss_pred c----------------------hHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH----HHHHHHHHHHHHh-c
Q 021660 117 G----------------------IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK----DAQFALRRVIEKY-T 169 (309)
Q Consensus 117 ~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~----~~~~~l~~~l~~~-~ 169 (309)
. ...+...+...... ...+.+|+|||++.+.. +....|+..++.. .
T Consensus 89 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~-------~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~ 161 (386)
T 2qby_A 89 TPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRD-------YGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNK 161 (386)
T ss_dssp SHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHT-------CCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhc-------cCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCC
Confidence 1 11112222222211 11378999999998753 3344555555432 3
Q ss_pred CCceEEEEecCC---cccchhhhcce--eEEEecCCChHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHhc---CCHHHH
Q 021660 170 KNTRFALICNQV---NKIIPALQSRC--TRFRFAPLEPVHVTERLKHVIEAE--GLDVTEGGLAALVRLCN---GDMRKA 239 (309)
Q Consensus 170 ~~~~~i~~~~~~---~~l~~~l~~r~--~~i~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~l~~i~~~~~---g~~r~~ 239 (309)
....+|++++.. ..+.+.+.+|+ ..+.|++++.+++.+++..++... ...+++++++.+++.++ |++|.+
T Consensus 162 ~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~ 241 (386)
T 2qby_A 162 SKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRA 241 (386)
T ss_dssp --EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHH
T ss_pred CeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 356677888765 35667788888 789999999999999999988753 35789999999999998 999999
Q ss_pred HHHHHHHHhhc-----CCcCHHHHHhhhCCC
Q 021660 240 LNILQSTHMAS-----QQITEEAVYLCTGNP 265 (309)
Q Consensus 240 ~~~l~~~~~~~-----~~i~~~~v~~~~~~~ 265 (309)
++.++.+...+ ..++.+++..++...
T Consensus 242 ~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 242 LDLLRVSGEIAERMKDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp HHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 99998776532 478999888766443
No 45
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.84 E-value=1.2e-19 Score=162.05 Aligned_cols=193 Identities=18% Similarity=0.199 Sum_probs=140.5
Q ss_pred hhhhcCCCCccccccChHHHHHHHHHHh------------cCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEE
Q 021660 43 WVEKYRPQSLADVAAHRDIVDTIDRLTS------------ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (309)
Q Consensus 43 ~~~~~~p~~~~~~ig~~~~~~~l~~~~~------------~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 110 (309)
+...+.+..|++++|++.+++.+..++. .....+++|+||||||||++|+++++.+. ...++.+
T Consensus 124 i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~----~~~~~~v 199 (444)
T 2zan_A 124 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN----NSTFFSI 199 (444)
T ss_dssp CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC----SSEEEEE
T ss_pred eeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC----CCCEEEE
Confidence 3455677899999999999999998773 12234599999999999999999999972 3455556
Q ss_pred ecCCCcc------hHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH-----------HHHHHHHHHHHHh---cC
Q 021660 111 NASDDRG------IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKY---TK 170 (309)
Q Consensus 111 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~-----------~~~~~l~~~l~~~---~~ 170 (309)
++..... ...+...+..... ..+.+|+|||+|.+.. ...+.|+..++.. +.
T Consensus 200 ~~~~l~~~~~g~~~~~~~~~f~~a~~---------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 270 (444)
T 2zan_A 200 SSSDLVSKWLGESEKLVKNLFQLARE---------NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 270 (444)
T ss_dssp CCC---------CCCTHHHHHHHHHH---------SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCS
T ss_pred eHHHHHhhhcchHHHHHHHHHHHHHH---------cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCC
Confidence 5543211 1112222222211 1578999999998842 2345566656542 34
Q ss_pred CceEEEEecCCcccchhhhcce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 021660 171 NTRFALICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQSTHM 248 (309)
Q Consensus 171 ~~~~i~~~~~~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g-~~r~~~~~l~~~~~ 248 (309)
.+.||++||.+..+++++.+|| ..+.++.|+.++...+++.++...+..+++..++.|++.+.| +.+.+..+++.++.
T Consensus 271 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~ 350 (444)
T 2zan_A 271 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALM 350 (444)
T ss_dssp SCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred CEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 6778888999999999999999 789999999999999999998877777899999999999998 45555555555543
No 46
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.84 E-value=3.4e-19 Score=156.21 Aligned_cols=198 Identities=21% Similarity=0.270 Sum_probs=138.2
Q ss_pred CCccccccChHHHHHHHHHHh------------cCCC-CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCc
Q 021660 50 QSLADVAAHRDIVDTIDRLTS------------ENRL-PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR 116 (309)
Q Consensus 50 ~~~~~~ig~~~~~~~l~~~~~------------~~~~-~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 116 (309)
.+|+++.|.+..++.+...+. +..+ ..+|||||||||||++|+++|+++ +..++.+++....
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~-----~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST-----KAAFIRVNGSEFV 243 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH-----TCEEEEEEGGGTC
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCeEEEecchhh
Confidence 479999999999998888764 1222 349999999999999999999998 7778887766421
Q ss_pred ------chHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH--------------HHHHHHHHHHHHhc--CCceE
Q 021660 117 ------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK--------------DAQFALRRVIEKYT--KNTRF 174 (309)
Q Consensus 117 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~--------------~~~~~l~~~l~~~~--~~~~~ 174 (309)
+...++..+...... .+.+++|||+|.+.. .....|+..++... .++.+
T Consensus 244 ~~~~Ge~e~~ir~lF~~A~~~---------aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~v 314 (428)
T 4b4t_K 244 HKYLGEGPRMVRDVFRLAREN---------APSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKV 314 (428)
T ss_dssp CSSCSHHHHHHHHHHHHHHHT---------CSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEE
T ss_pred ccccchhHHHHHHHHHHHHHc---------CCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEE
Confidence 122333333332221 578999999986531 12456777777543 34577
Q ss_pred EEEecCCcccchhhhc--ce-eEEEec-CCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC-HHHHHHHHHHHHhh
Q 021660 175 ALICNQVNKIIPALQS--RC-TRFRFA-PLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGD-MRKALNILQSTHMA 249 (309)
Q Consensus 175 i~~~~~~~~l~~~l~~--r~-~~i~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~-~r~~~~~l~~~~~~ 249 (309)
|++||.++.+++++++ || ..|+|+ .|+..+...+++.+++...+. ++..++.+++.+.|- ...+.++++.++..
T Consensus 315 I~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~~~dl~~lA~~t~G~sgadi~~l~~eA~~~ 393 (428)
T 4b4t_K 315 IMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGAVIAAIMQEAGLR 393 (428)
T ss_dssp EEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-TTCCHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred EEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 8889999999999988 77 678896 678888999998888755432 223478899998763 33444444444432
Q ss_pred c-----CCcCHHHHHhhh
Q 021660 250 S-----QQITEEAVYLCT 262 (309)
Q Consensus 250 ~-----~~i~~~~v~~~~ 262 (309)
+ ..|+.+++..++
T Consensus 394 a~r~~~~~i~~~d~~~A~ 411 (428)
T 4b4t_K 394 AVRKNRYVILQSDLEEAY 411 (428)
T ss_dssp HHHTTCSSBCHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHH
Confidence 2 457777776655
No 47
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.84 E-value=4.4e-20 Score=159.16 Aligned_cols=212 Identities=15% Similarity=0.155 Sum_probs=153.2
Q ss_pred ChhhhcCCCCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHH
Q 021660 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVV 121 (309)
Q Consensus 42 ~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (309)
+|.++++|..+++++|+++.+..+...+..+ .+++|+||||||||++++.+++.+ +..+..+++........+
T Consensus 16 ~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~-----~~~~~~i~~~~~~~~~~l 88 (331)
T 2r44_A 16 NKIKEVIDEVGKVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM-----DLDFHRIQFTPDLLPSDL 88 (331)
T ss_dssp HHHHHHHHHHTTTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT-----TCCEEEEECCTTCCHHHH
T ss_pred HHHHHHHHHhccceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh-----CCCeEEEecCCCCChhhc
Confidence 5889999999999999999999998888775 469999999999999999999987 444555665432222111
Q ss_pred HHHHHHhhhc---cccccCC-CCccEEEEEeCCCCCCHHHHHHHHHHHHHh-----------cCCceEEEEecCCc----
Q 021660 122 RQQIQDFAST---QSFSFGV-KASVKLVLLDEADAMTKDAQFALRRVIEKY-----------TKNTRFALICNQVN---- 182 (309)
Q Consensus 122 ~~~~~~~~~~---~~~~~~~-~~~~~lliiDe~~~l~~~~~~~l~~~l~~~-----------~~~~~~i~~~~~~~---- 182 (309)
+...... ....+.. .....+++|||++.+.+..++.|+..+++. +....+|.++|...
T Consensus 89 ---~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~ 165 (331)
T 2r44_A 89 ---IGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGT 165 (331)
T ss_dssp ---HEEEEEETTTTEEEEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCC
T ss_pred ---CCceeecCCCCceEeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCc
Confidence 1100000 0000000 001369999999999999999999999963 33445555556432
Q ss_pred -ccchhhhccee-EEEecCCChHHHHHHHHHHHHH----------------------cCCCCCHHHHHHHHHHh-----c
Q 021660 183 -KIIPALQSRCT-RFRFAPLEPVHVTERLKHVIEA----------------------EGLDVTEGGLAALVRLC-----N 233 (309)
Q Consensus 183 -~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~----------------------~~~~~~~~~l~~i~~~~-----~ 233 (309)
.+.+++.+||. .+.+.+|+.++..++++..+.. .++.+++++++++++.+ .
T Consensus 166 ~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~r~~ 245 (331)
T 2r44_A 166 YPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVFATRFP 245 (331)
T ss_dssp CCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHHSG
T ss_pred ccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcc
Confidence 37899999995 6999999999999999887654 26778999999998765 2
Q ss_pred C---------------CHHHHHHHHHHHHhhc-----CCcCHHHHHhhhC
Q 021660 234 G---------------DMRKALNILQSTHMAS-----QQITEEAVYLCTG 263 (309)
Q Consensus 234 g---------------~~r~~~~~l~~~~~~~-----~~i~~~~v~~~~~ 263 (309)
+ ++|.++++++.+...+ ..++.+++..++.
T Consensus 246 ~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~ 295 (331)
T 2r44_A 246 AEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAY 295 (331)
T ss_dssp GGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred ccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 2 6999999887655332 4588888877664
No 48
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.82 E-value=1.3e-18 Score=154.94 Aligned_cols=201 Identities=20% Similarity=0.268 Sum_probs=142.5
Q ss_pred CCCCccccccChHHHHHHHHHHhc-----------CC-CCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCC
Q 021660 48 RPQSLADVAAHRDIVDTIDRLTSE-----------NR-LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115 (309)
Q Consensus 48 ~p~~~~~~ig~~~~~~~l~~~~~~-----------~~-~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 115 (309)
...+|++++|.++.++.+.+.+.. .+ +.+++|+||||||||+++++++.++ +..++.+++...
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~-----~~~f~~is~~~~ 85 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA-----NVPFFHISGSDF 85 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH-----TCCEEEEEGGGT
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCCeeeCCHHHH
Confidence 344789999999999888877542 12 2349999999999999999999998 566677766532
Q ss_pred c------chHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH--------------HHHHHHHHHHHHh--cCCce
Q 021660 116 R------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK--------------DAQFALRRVIEKY--TKNTR 173 (309)
Q Consensus 116 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~--------------~~~~~l~~~l~~~--~~~~~ 173 (309)
. +...++..+..... ..+.+|+|||+|.+.. ...+.|+..++.. .....
T Consensus 86 ~~~~~g~~~~~~r~lf~~A~~---------~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~vi 156 (476)
T 2ce7_A 86 VELFVGVGAARVRDLFAQAKA---------HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGII 156 (476)
T ss_dssp TTCCTTHHHHHHHHHHHHHHH---------TCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEE
T ss_pred HHHHhcccHHHHHHHHHHHHh---------cCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEE
Confidence 1 11223333332221 1578999999998753 1345566666632 34567
Q ss_pred EEEEecCCcccchhhhc--ce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCH-HHHHHHHHHHHhh
Q 021660 174 FALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDM-RKALNILQSTHMA 249 (309)
Q Consensus 174 ~i~~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~-r~~~~~l~~~~~~ 249 (309)
+|++||.++.+++++.+ || ..+.+++|+.++..++++.+++...+. ++..+..+++.+.|+. +.+.++++.++..
T Consensus 157 VIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~-~~v~l~~la~~t~G~sgadL~~lv~~Aal~ 235 (476)
T 2ce7_A 157 VMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLA-EDVNLEIIAKRTPGFVGADLENLVNEAALL 235 (476)
T ss_dssp EEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred EEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCc-chhhHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 78888998888888876 77 688999999999999998887654332 2233788999999987 6777888766543
Q ss_pred c-----CCcCHHHHHhhhC
Q 021660 250 S-----QQITEEAVYLCTG 263 (309)
Q Consensus 250 ~-----~~i~~~~v~~~~~ 263 (309)
+ ..|+.+++..++.
T Consensus 236 A~~~~~~~I~~~dl~~al~ 254 (476)
T 2ce7_A 236 AAREGRDKITMKDFEEAID 254 (476)
T ss_dssp HHHTTCSSBCHHHHHHHHH
T ss_pred HHHcCCCeecHHHHHHHHH
Confidence 2 4688888877664
No 49
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.81 E-value=9.1e-19 Score=152.09 Aligned_cols=216 Identities=14% Similarity=0.154 Sum_probs=142.3
Q ss_pred hcCCCCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccC----ccc-----------------
Q 021660 46 KYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA----QYH----------------- 104 (309)
Q Consensus 46 ~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~----~~~----------------- 104 (309)
.-+|..|++++|++..+..+..........+++|+||||||||++++.+++.+... +..
T Consensus 17 ~~~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (350)
T 1g8p_A 17 TRPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLS 96 (350)
T ss_dssp -CCCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSC
T ss_pred CCCCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhc
Confidence 34567899999999988776655554444569999999999999999999987421 000
Q ss_pred -------ccEEEEecCCCcchHHH------HHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHh---
Q 021660 105 -------NMILELNASDDRGIDVV------RQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY--- 168 (309)
Q Consensus 105 -------~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~--- 168 (309)
..++.+.... ....+ ...+...........-..+.+.+|+|||++.++.+.++.|+.+++..
T Consensus 97 ~~~~~~~~~~~~~~~~~--~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~ 174 (350)
T 1g8p_A 97 TNVIRKPTPVVDLPLGV--SEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENV 174 (350)
T ss_dssp CCEEEECCCEEEECTTC--CHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSEEE
T ss_pred cccccCCCcccccCCCc--chhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhcCceE
Confidence 0111111111 01111 11111110000000001113679999999999999999999999963
Q ss_pred ----------cCCceEEEEecCCc-ccchhhhcce-eEEEecCCCh-HHHHHHHHHH-----------------------
Q 021660 169 ----------TKNTRFALICNQVN-KIIPALQSRC-TRFRFAPLEP-VHVTERLKHV----------------------- 212 (309)
Q Consensus 169 ----------~~~~~~i~~~~~~~-~l~~~l~~r~-~~i~~~~~~~-~~~~~~l~~~----------------------- 212 (309)
+....+|+++|... .+.+++.+|| ..+.+++|+. ++..+++.++
T Consensus 175 ~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (350)
T 1g8p_A 175 VERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRN 254 (350)
T ss_dssp ECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred EEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHH
Confidence 23556677777644 7889999999 4599999954 4444666542
Q ss_pred ------HHHcCCCCCHHHHHHHHHHhcC----CHHHHHHHHHHHHhhc-----CCcCHHHHHhhhC
Q 021660 213 ------IEAEGLDVTEGGLAALVRLCNG----DMRKALNILQSTHMAS-----QQITEEAVYLCTG 263 (309)
Q Consensus 213 ------~~~~~~~~~~~~l~~i~~~~~g----~~r~~~~~l~~~~~~~-----~~i~~~~v~~~~~ 263 (309)
....++.+++++++.|++++.+ ++|.+.++++.+...+ ..|+.+++..++.
T Consensus 255 ~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~ 320 (350)
T 1g8p_A 255 QILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVAT 320 (350)
T ss_dssp HHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 2233568999999999999876 8999999997665433 4599999887764
No 50
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.80 E-value=1.9e-18 Score=146.70 Aligned_cols=188 Identities=19% Similarity=0.225 Sum_probs=130.9
Q ss_pred hcCCCCccccccChHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEec
Q 021660 46 KYRPQSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (309)
Q Consensus 46 ~~~p~~~~~~ig~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 112 (309)
...+..|++++|.+.+++.+.+++.. .....++|+||||||||++++++++.+ ...++.+++
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~-----~~~~i~v~~ 82 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISIKG 82 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT-----TCEEEEECH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh-----CCCEEEEEh
Confidence 34566789999999999999888753 223449999999999999999999997 456666664
Q ss_pred CCCc------chHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHH--------------HHHHHHHHHHHh--cC
Q 021660 113 SDDR------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD--------------AQFALRRVIEKY--TK 170 (309)
Q Consensus 113 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~--------------~~~~l~~~l~~~--~~ 170 (309)
.... ....+...+..... ..+.+|+|||++.+... ....|+..++.. ..
T Consensus 83 ~~l~~~~~g~~~~~~~~~f~~a~~---------~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 153 (301)
T 3cf0_A 83 PELLTMWFGESEANVREIFDKARQ---------AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 153 (301)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHH---------TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTS
T ss_pred HHHHhhhcCchHHHHHHHHHHHHh---------cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCC
Confidence 3211 11112222222211 14689999999987543 256778888743 34
Q ss_pred CceEEEEecCCcccchhhhc--ce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC-HHHHHHHHHHH
Q 021660 171 NTRFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGD-MRKALNILQST 246 (309)
Q Consensus 171 ~~~~i~~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~-~r~~~~~l~~~ 246 (309)
+..+|++||..+.+++++.+ |+ ..+++++|+.++..++++.+++..+.. .+..++.++..+.|- .+.+.++++.+
T Consensus 154 ~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~sg~dl~~l~~~a 232 (301)
T 3cf0_A 154 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRA 232 (301)
T ss_dssp SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccchHHHHHHHcCCCCHHHHHHHHHHH
Confidence 56788888999899999887 88 789999999999999999988776543 223356677776553 33444555544
Q ss_pred Hh
Q 021660 247 HM 248 (309)
Q Consensus 247 ~~ 248 (309)
+.
T Consensus 233 ~~ 234 (301)
T 3cf0_A 233 CK 234 (301)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 51
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.80 E-value=9.3e-19 Score=157.23 Aligned_cols=194 Identities=15% Similarity=0.216 Sum_probs=140.0
Q ss_pred CcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCc-----ccccEEEEecCC
Q 021660 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-----YHNMILELNASD 114 (309)
Q Consensus 40 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-----~~~~~~~~~~~~ 114 (309)
...|.++++|..+++++|++..++.+...+.....++++|+||||||||++++.+++.+.... .+..++.+++..
T Consensus 167 ~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~ 246 (468)
T 3pxg_A 167 ARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT 246 (468)
T ss_dssp CCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----
T ss_pred HHHHHHHHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc
Confidence 456889999999999999999999999999888778899999999999999999999985432 233455555441
Q ss_pred C-c--chHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCc-----ccch
Q 021660 115 D-R--GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVN-----KIIP 186 (309)
Q Consensus 115 ~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~-----~l~~ 186 (309)
. . ....+...+...... ++.+|+|| ...+..+.|...++ .....+|++++... .+++
T Consensus 247 ~~~g~~e~~~~~~~~~~~~~---------~~~iLfiD----~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~ 311 (468)
T 3pxg_A 247 KYRGEFEDRLKKVMDEIRQA---------GNIILFID----AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDA 311 (468)
T ss_dssp ------CTTHHHHHHHHHTC---------CCCEEEEC----C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCS
T ss_pred cccchHHHHHHHHHHHHHhc---------CCeEEEEe----CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCH
Confidence 1 0 011223333333211 46799999 33345566666665 33567777777665 5788
Q ss_pred hhhcceeEEEecCCChHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhcC------CHHHHHHHHHHHHh
Q 021660 187 ALQSRCTRFRFAPLEPVHVTERLKHVIEA----EGLDVTEGGLAALVRLCNG------DMRKALNILQSTHM 248 (309)
Q Consensus 187 ~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~l~~i~~~~~g------~~r~~~~~l~~~~~ 248 (309)
++.+||..+.|++|+.++...+++.++.+ .++.++++++..+++.+.+ .++.++++++.++.
T Consensus 312 al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~ 383 (468)
T 3pxg_A 312 ALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS 383 (468)
T ss_dssp HHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHH
T ss_pred HHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHH
Confidence 99999999999999999999999987766 6889999999999998753 36789998877664
No 52
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.79 E-value=1.2e-18 Score=148.90 Aligned_cols=194 Identities=16% Similarity=0.224 Sum_probs=138.2
Q ss_pred cccccChHHHHHHHHHHhcCC--------C-CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHH
Q 021660 53 ADVAAHRDIVDTIDRLTSENR--------L-PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQ 123 (309)
Q Consensus 53 ~~~ig~~~~~~~l~~~~~~~~--------~-~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (309)
.+++|++.+++.+...+.... + .+++|+||||||||++++.+++.+...+. .++.+++...........
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~--~~~~~~~~~~~~~~~~~~ 94 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEE--AMIRIDMTEYMEKHAVSR 94 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGG--GEEEEEGGGCCSTTHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCc--ceEEeecccccccccHHH
Confidence 468899999998888876531 1 24999999999999999999999854433 345555543222111111
Q ss_pred HHHHhhhcccc----c---cCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCceEEEEecC-----
Q 021660 124 QIQDFASTQSF----S---FGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQ----- 180 (309)
Q Consensus 124 ~~~~~~~~~~~----~---~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~~i~~~~~----- 180 (309)
.+......... . ......+.+|+|||++.+.+..++.|+.+++... .++.+|+++|.
T Consensus 95 l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i 174 (311)
T 4fcw_A 95 LIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLI 174 (311)
T ss_dssp HHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHH
T ss_pred hcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHH
Confidence 11000000000 0 0000135799999999999999999999999754 24558888887
Q ss_pred ---------------------Ccccchhhhcce-eEEEecCCChHHHHHHHHHHHHHc---------CCCCCHHHHHHHH
Q 021660 181 ---------------------VNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAE---------GLDVTEGGLAALV 229 (309)
Q Consensus 181 ---------------------~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~l~~i~ 229 (309)
...+.+.+.+|+ ..+.|.||+.+++..++...+.+. ...+++++++.++
T Consensus 175 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 254 (311)
T 4fcw_A 175 LEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLA 254 (311)
T ss_dssp HTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHH
T ss_pred HhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHH
Confidence 345677889999 889999999999999998877653 3568999999999
Q ss_pred HHh---cCCHHHHHHHHHHHHh
Q 021660 230 RLC---NGDMRKALNILQSTHM 248 (309)
Q Consensus 230 ~~~---~g~~r~~~~~l~~~~~ 248 (309)
++. +|++|.+.+.++.+..
T Consensus 255 ~~~~~~~gn~R~L~~~i~~~~~ 276 (311)
T 4fcw_A 255 ERGYDPVFGARPLRRVIQRELE 276 (311)
T ss_dssp HHSCBTTTBTTTHHHHHHHHTH
T ss_pred HhCCCccCCchhHHHHHHHHHH
Confidence 976 4999999999987765
No 53
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.78 E-value=1.2e-18 Score=167.50 Aligned_cols=202 Identities=14% Similarity=0.188 Sum_probs=139.0
Q ss_pred cChhhhcCCCCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCc-----ccccEEEEecCCC
Q 021660 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-----YHNMILELNASDD 115 (309)
Q Consensus 41 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-----~~~~~~~~~~~~~ 115 (309)
.+|.++++|..+++++|++..+..+..++.....++++|+||||||||++++.+++.+.... .+..++.+++...
T Consensus 158 ~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l 237 (854)
T 1qvr_A 158 IDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSL 237 (854)
T ss_dssp EEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---
T ss_pred HhHHHHHhcCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHh
Confidence 35788899999999999999999999999888777899999999999999999999984422 1445566655432
Q ss_pred cc----hHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCC--------HHHHHHHHHHHHHhcCCceEEEEecCCc-
Q 021660 116 RG----IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT--------KDAQFALRRVIEKYTKNTRFALICNQVN- 182 (309)
Q Consensus 116 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~--------~~~~~~l~~~l~~~~~~~~~i~~~~~~~- 182 (309)
.. .......+......... ..++.+|+|||++.+. .+..+.|..+++. ....+|++++...
T Consensus 238 ~~g~~~~g~~~~~l~~~~~~~~~----~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~~~~~ 311 (854)
T 1qvr_A 238 LAGAKYRGEFEERLKAVIQEVVQ----SQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATTLDEY 311 (854)
T ss_dssp --------CHHHHHHHHHHHHHT----TCSSEEEEECCC-------------------HHHHHT--TCCCEEEEECHHHH
T ss_pred hccCccchHHHHHHHHHHHHHHh----cCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecCchHH
Confidence 11 11112222222211110 1146799999999986 2334556666654 3556777776543
Q ss_pred ---ccchhhhcceeEEEecCCChHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhcC------CHHHHHHHHHHHHh
Q 021660 183 ---KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA----EGLDVTEGGLAALVRLCNG------DMRKALNILQSTHM 248 (309)
Q Consensus 183 ---~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~l~~i~~~~~g------~~r~~~~~l~~~~~ 248 (309)
.+.+++.+||..+.+++|+.++...+++..+.+ .++.++++++..+++.+.| .++.++.+++.++.
T Consensus 312 ~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a 390 (854)
T 1qvr_A 312 REIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAA 390 (854)
T ss_dssp HHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHH
T ss_pred hhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHH
Confidence 367899999988999999999999999876653 4788999999999998843 48888888876664
No 54
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.78 E-value=2.8e-17 Score=139.44 Aligned_cols=203 Identities=16% Similarity=0.187 Sum_probs=140.1
Q ss_pred cccccChHHHHHHHHHHhc--CCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhh
Q 021660 53 ADVAAHRDIVDTIDRLTSE--NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAS 130 (309)
Q Consensus 53 ~~~ig~~~~~~~l~~~~~~--~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (309)
++++|+...+..+...+.. ....+++|+||||||||++|+.+++..... ...++.+++..... ..+.+.+..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~--~~~~v~v~~~~~~~-~l~~~~lfg--- 75 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARS--DRPLVTLNCAALNE-SLLESELFG--- 75 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCS--SSCCCEEECSSCCH-HHHHHHHTC---
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCccc--CCCeEEEeCCCCCh-HHHHHHhcC---
Confidence 3688999888888777654 233459999999999999999999976322 34566777765322 222221111
Q ss_pred ccccccC----------CCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCceEEEEecCCc-------
Q 021660 131 TQSFSFG----------VKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQVN------- 182 (309)
Q Consensus 131 ~~~~~~~----------~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~~i~~~~~~~------- 182 (309)
.....+. ..+.+.+|+|||++.++.+.+..|+.++++.. .++++|++||...
T Consensus 76 ~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g 155 (304)
T 1ojl_A 76 HEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAG 155 (304)
T ss_dssp CCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHT
T ss_pred ccccccCchhhhhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhC
Confidence 0000000 01135699999999999999999999999642 4577888887641
Q ss_pred ccchhhhcce--eEEEecCCC--hHHHHHHHHHHHHH----cC---CCCCHHHHHHHHHHh-cCCHHHHHHHHHHHHhhc
Q 021660 183 KIIPALQSRC--TRFRFAPLE--PVHVTERLKHVIEA----EG---LDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS 250 (309)
Q Consensus 183 ~l~~~l~~r~--~~i~~~~~~--~~~~~~~l~~~~~~----~~---~~~~~~~l~~i~~~~-~g~~r~~~~~l~~~~~~~ 250 (309)
.+.+.+..|+ ..+.++|+. .+++..++...+.+ .+ ..+++++++.+..+. +||+|.+.+.++.+...+
T Consensus 156 ~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 156 RFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLL 235 (304)
T ss_dssp SSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhC
Confidence 3456788887 446677777 46666666655443 33 468999999999987 999999999999887654
Q ss_pred --CCcCHHHHHhh
Q 021660 251 --QQITEEAVYLC 261 (309)
Q Consensus 251 --~~i~~~~v~~~ 261 (309)
..|+.+++...
T Consensus 236 ~~~~i~~~~l~~~ 248 (304)
T 1ojl_A 236 TGEYISERELPLA 248 (304)
T ss_dssp CSSSBCGGGSCGG
T ss_pred CCCcccHHhhhhh
Confidence 45777766443
No 55
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.77 E-value=1.1e-17 Score=139.58 Aligned_cols=204 Identities=16% Similarity=0.136 Sum_probs=133.8
Q ss_pred CccccccChHHHHHHHHHHhc--CCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHh
Q 021660 51 SLADVAAHRDIVDTIDRLTSE--NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDF 128 (309)
Q Consensus 51 ~~~~~ig~~~~~~~l~~~~~~--~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (309)
+|++++|+...+..+.+.+.. ....+++|+||||||||++++.+++..... ...++.+++.... ...+...+...
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~--~~~~~~v~~~~~~-~~~~~~~l~g~ 80 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAALN-ENLLDSELFGH 80 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT--TSCEEEEEGGGSC-HHHHHHHHHCC
T ss_pred ccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc--CCCeEEEecCCCC-hhHHHHHhcCC
Confidence 578899999888877766543 223459999999999999999999886322 3457777776532 12222211100
Q ss_pred hh-----c---cccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHh-----------cCCceEEEEecCCc-------
Q 021660 129 AS-----T---QSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-----------TKNTRFALICNQVN------- 182 (309)
Q Consensus 129 ~~-----~---~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~-----------~~~~~~i~~~~~~~------- 182 (309)
.. . ....+ ....+.+|+|||++.++.+.+..|+.+++.. +.+..+|+++|...
T Consensus 81 ~~~~~~g~~~~~~~~l-~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~ 159 (265)
T 2bjv_A 81 EAGAFTGAQKRHPGRF-ERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEG 159 (265)
T ss_dssp C---------CCCCHH-HHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHT
T ss_pred cccccccccccccchh-hhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcC
Confidence 00 0 00000 0124579999999999999999999999963 34677888888642
Q ss_pred ccchhhhcce--eEEEecCCCh--HHHHHHHHHH----HHHcCC----CCCHHHHHHHHHHh-cCCHHHHHHHHHHHHhh
Q 021660 183 KIIPALQSRC--TRFRFAPLEP--VHVTERLKHV----IEAEGL----DVTEGGLAALVRLC-NGDMRKALNILQSTHMA 249 (309)
Q Consensus 183 ~l~~~l~~r~--~~i~~~~~~~--~~~~~~l~~~----~~~~~~----~~~~~~l~~i~~~~-~g~~r~~~~~l~~~~~~ 249 (309)
.+.+.+.+|+ ..+.++++.. +++..++..+ ..+.+. .+++++++.+..+. +||+|.+.+.++.+...
T Consensus 160 ~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~ 239 (265)
T 2bjv_A 160 TFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYR 239 (265)
T ss_dssp SSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHH
T ss_pred CccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 3567888888 4577777765 5666554444 344554 68999999998775 89999999999987754
Q ss_pred c--CCcCHHHH
Q 021660 250 S--QQITEEAV 258 (309)
Q Consensus 250 ~--~~i~~~~v 258 (309)
+ ..|+.+++
T Consensus 240 ~~~~~i~~~~l 250 (265)
T 2bjv_A 240 HGTSDYPLDDI 250 (265)
T ss_dssp HCCSSSCBCCC
T ss_pred CCCCcCcHHHc
Confidence 3 45666554
No 56
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.77 E-value=4.6e-19 Score=140.46 Aligned_cols=163 Identities=14% Similarity=0.168 Sum_probs=115.0
Q ss_pred cChhhhcCCCCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCc-----ccccEEEEecCCC
Q 021660 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-----YHNMILELNASDD 115 (309)
Q Consensus 41 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-----~~~~~~~~~~~~~ 115 (309)
.+|.++++|..+++++|++..++.+..++......+++|+||+|+|||++++.+++.+.... ....++.+++...
T Consensus 10 ~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (195)
T 1jbk_A 10 IDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL 89 (195)
T ss_dssp EEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHH
T ss_pred HHHHHHHhhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHH
Confidence 46889999999999999999999999999887777799999999999999999999985421 1233444443211
Q ss_pred ----cchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHH--------HHHHHHHHHHHhcCCceEEEEecCCc-
Q 021660 116 ----RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD--------AQFALRRVIEKYTKNTRFALICNQVN- 182 (309)
Q Consensus 116 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~--------~~~~l~~~l~~~~~~~~~i~~~~~~~- 182 (309)
.........+........ ...++.+|+|||++.+... ..+.|..+++. ....+|++++...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~~~~~~ 163 (195)
T 1jbk_A 90 VAGAKYRGEFEERLKGVLNDLA----KQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTLDEY 163 (195)
T ss_dssp HTTTCSHHHHHHHHHHHHHHHH----HSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEECHHHH
T ss_pred hccCCccccHHHHHHHHHHHHh----hcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeCCHHHH
Confidence 111222222332222110 0114679999999998632 25566666653 3567777777654
Q ss_pred ----ccchhhhcceeEEEecCCChHHHHHHH
Q 021660 183 ----KIIPALQSRCTRFRFAPLEPVHVTERL 209 (309)
Q Consensus 183 ----~l~~~l~~r~~~i~~~~~~~~~~~~~l 209 (309)
.+.+++.+||..+.+.+|+.++..+++
T Consensus 164 ~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 164 RQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 567999999988999999999887764
No 57
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.77 E-value=6.2e-18 Score=141.64 Aligned_cols=181 Identities=14% Similarity=0.220 Sum_probs=118.7
Q ss_pred cccccChHHHHHHHH-------HHh---cCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCc---ch-
Q 021660 53 ADVAAHRDIVDTIDR-------LTS---ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR---GI- 118 (309)
Q Consensus 53 ~~~ig~~~~~~~l~~-------~~~---~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~---~~- 118 (309)
..++|+...++.+.. .+. .....+++|+||||||||++|+.+++.+ +..++.+++.... ..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~-----~~~~~~i~~~~~~~g~~~~ 107 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES-----NFPFIKICSPDKMIGFSET 107 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH-----TCSEEEEECGGGCTTCCHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh-----CCCEEEEeCHHHhcCCchH
Confidence 456777666554443 333 2233459999999999999999999997 5566666654321 11
Q ss_pred ---HHHHHHHHHhhhccccccCCCCccEEEEEeCCCCC----------CHHHHHHHHHHHHHh---cCCceEEEEecCCc
Q 021660 119 ---DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAM----------TKDAQFALRRVIEKY---TKNTRFALICNQVN 182 (309)
Q Consensus 119 ---~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l----------~~~~~~~l~~~l~~~---~~~~~~i~~~~~~~ 182 (309)
..+...+..... ..+.+|+|||++.+ .....+.|...++.. .....+|+++|...
T Consensus 108 ~~~~~~~~~~~~~~~---------~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~ 178 (272)
T 1d2n_A 108 AKCQAMKKIFDDAYK---------SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKD 178 (272)
T ss_dssp HHHHHHHHHHHHHHT---------SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHH
T ss_pred HHHHHHHHHHHHHHh---------cCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChh
Confidence 122222222211 15789999999887 233344555555432 22334666677776
Q ss_pred ccch-hhhcce-eEEEecCCCh-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC-----CHHHHHHHHHHHHhhcCC
Q 021660 183 KIIP-ALQSRC-TRFRFAPLEP-VHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-----DMRKALNILQSTHMASQQ 252 (309)
Q Consensus 183 ~l~~-~l~~r~-~~i~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g-----~~r~~~~~l~~~~~~~~~ 252 (309)
.+.+ .+.+|+ ..+.+++++. +++..++.+. ..++++.+..+++.+.| ++|.+++.++.+...+..
T Consensus 179 ~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~-----~~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~~~ 251 (272)
T 1d2n_A 179 VLQEMEMLNAFSTTIHVPNIATGEQLLEALELL-----GNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPE 251 (272)
T ss_dssp HHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHH-----TCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSCGG
T ss_pred hcchhhhhcccceEEcCCCccHHHHHHHHHHhc-----CCCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhchH
Confidence 6665 577886 8889988877 5666665542 25789999999999988 999999999988765433
No 58
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.76 E-value=2.9e-17 Score=147.46 Aligned_cols=189 Identities=20% Similarity=0.263 Sum_probs=136.2
Q ss_pred hhcCCCCccccccChHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEe
Q 021660 45 EKYRPQSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELN 111 (309)
Q Consensus 45 ~~~~p~~~~~~ig~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 111 (309)
+...+..+++++|.+..++.+.+++.. ....++||+||||||||++|+++++++ +..++.++
T Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~-----~~~fv~vn 270 (489)
T 3hu3_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-----GAFFFLIN 270 (489)
T ss_dssp HHHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC-----SSEEEEEE
T ss_pred cccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh-----CCCEEEEE
Confidence 345677899999999999999888753 233459999999999999999999987 56777777
Q ss_pred cCCCc------chHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH-----------HHHHHHHHHHHHhc--CCc
Q 021660 112 ASDDR------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKYT--KNT 172 (309)
Q Consensus 112 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~-----------~~~~~l~~~l~~~~--~~~ 172 (309)
+.... ....+...+..... ..+.+|+|||+|.+.. ..+..|+..++... .+.
T Consensus 271 ~~~l~~~~~g~~~~~~~~~f~~A~~---------~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v 341 (489)
T 3hu3_A 271 GPEIMSKLAGESESNLRKAFEEAEK---------NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (489)
T ss_dssp HHHHHTSCTTHHHHHHHHHHHHHHH---------TCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCE
T ss_pred chHhhhhhcchhHHHHHHHHHHHHh---------cCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCce
Confidence 64311 11122222222221 1467999999977653 45678899998643 356
Q ss_pred eEEEEecCCcccchhhhc--ce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC-HHHHHHHHHHHHh
Q 021660 173 RFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGD-MRKALNILQSTHM 248 (309)
Q Consensus 173 ~~i~~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~-~r~~~~~l~~~~~ 248 (309)
++|.+||....+.+++.+ || ..+.+..|+.++..++++.+++..... .+..+..+++.+.|. .+.+..+++.++.
T Consensus 342 ~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-~~~~l~~la~~t~g~s~~dL~~L~~~A~~ 420 (489)
T 3hu3_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAAL 420 (489)
T ss_dssp EEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred EEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-chhhHHHHHHHccCCcHHHHHHHHHHHHH
Confidence 777788988889999988 67 679999999999999999887655443 233467888888775 4445555555554
No 59
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.76 E-value=9.3e-20 Score=152.46 Aligned_cols=205 Identities=20% Similarity=0.233 Sum_probs=135.3
Q ss_pred hcCCCCccccccChHHHHHHHHHHhc-----------CC-CCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecC
Q 021660 46 KYRPQSLADVAAHRDIVDTIDRLTSE-----------NR-LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 113 (309)
Q Consensus 46 ~~~p~~~~~~ig~~~~~~~l~~~~~~-----------~~-~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 113 (309)
.+.+..|++++|++..++.+.+++.. .. ..+++|+||||||||++++.+++.+. ..++.+++.
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~-----~~~~~v~~~ 78 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH-----VPFFSMGGS 78 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT-----CCCCCCCSC
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC-----CCEEEechH
Confidence 34566789999999999888877651 12 33499999999999999999999983 333333333
Q ss_pred CCc------chHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHH---------------HHHHHHHHHHhc---
Q 021660 114 DDR------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDA---------------QFALRRVIEKYT--- 169 (309)
Q Consensus 114 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~---------------~~~l~~~l~~~~--- 169 (309)
... +...+...+..... ..+.+|+|||+|.+.... .+.|+..++...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~a~~---------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (268)
T 2r62_A 79 SFIEMFVGLGASRVRDLFETAKK---------QAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSEN 149 (268)
T ss_dssp TTTTSCSSSCSSSSSTTHHHHHH---------SCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSC
T ss_pred HHHHhhcchHHHHHHHHHHHHHh---------cCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCC
Confidence 211 00111111111111 146799999999986532 234555554332
Q ss_pred CCceEEEEecCCcccchhhhc--ce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC-CHHHHHHHHHH
Q 021660 170 KNTRFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQS 245 (309)
Q Consensus 170 ~~~~~i~~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g-~~r~~~~~l~~ 245 (309)
....+|+++|....+++++.+ |+ ..+.|++|+.++..++++.+++..... ++..++.+++.+.| ..+.+.++++.
T Consensus 150 ~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~g~dl~~l~~~ 228 (268)
T 2r62_A 150 APVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLTAGLAGADLANIINE 228 (268)
T ss_dssp SCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSSCSSCHHHHHHHHHH
T ss_pred CCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHcCCCCHHHHHHHHHH
Confidence 235667777888888888887 66 679999999999999998887644322 23336667777776 34577777776
Q ss_pred HHhhc-----CCcCHHHHHhhhCCC
Q 021660 246 THMAS-----QQITEEAVYLCTGNP 265 (309)
Q Consensus 246 ~~~~~-----~~i~~~~v~~~~~~~ 265 (309)
+...+ ..|+.+++..++...
T Consensus 229 a~~~a~~~~~~~i~~~~~~~a~~~~ 253 (268)
T 2r62_A 229 AALLAGRNNQKEVRQQHLKEAVERG 253 (268)
T ss_dssp HHHTTSSSCCCSCCHHHHHTSCTTC
T ss_pred HHHHHHHhccCCcCHHHHHHHHHHH
Confidence 66543 469999998877643
No 60
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.75 E-value=1.4e-17 Score=151.94 Aligned_cols=203 Identities=20% Similarity=0.246 Sum_probs=138.2
Q ss_pred ccccccChHHHHHHHHHHh------cCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHH----
Q 021660 52 LADVAAHRDIVDTIDRLTS------ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVV---- 121 (309)
Q Consensus 52 ~~~~ig~~~~~~~l~~~~~------~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 121 (309)
..+++|.+.+...+...+. ..+.++++|+||||||||++++.++..+ ...+..+++........+
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l-----~~~~~~i~~~~~~~~~~~~g~~ 154 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL-----GRKFVRISLGGVRDESEIRGHR 154 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH-----TCEEEEECCCC-----------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEecccchhhhhhhHH
Confidence 4568999999887766543 2234569999999999999999999998 445555555432111111
Q ss_pred -------HHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHH----HHHHHHHHHHhc---------------CCceEE
Q 021660 122 -------RQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDA----QFALRRVIEKYT---------------KNTRFA 175 (309)
Q Consensus 122 -------~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~----~~~l~~~l~~~~---------------~~~~~i 175 (309)
...+........ ....+++|||++.+..+. ++.|+++++... .++.+|
T Consensus 155 ~~~ig~~~~~~~~~~~~a~------~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 155 RTYVGAMPGRIIQGMKKAG------KLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp ---------CHHHHHHTTC------SSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred HHHhccCchHHHHHHHHhh------ccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 111111111110 134599999999998763 467777776321 356788
Q ss_pred EEecCCcccchhhhcceeEEEecCCChHHHHHHHHHHHH-----Hc-----CCCCCHHHHHHHHHHhc--CCHHHHHHHH
Q 021660 176 LICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE-----AE-----GLDVTEGGLAALVRLCN--GDMRKALNIL 243 (309)
Q Consensus 176 ~~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~-----~~-----~~~~~~~~l~~i~~~~~--g~~r~~~~~l 243 (309)
+++|....+++++++||.++.|++|+.++...++..++. .. ++.++++++..+++.+. |++|.+.+.+
T Consensus 229 ~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i 308 (543)
T 3m6a_A 229 ATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQL 308 (543)
T ss_dssp EECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHH
T ss_pred eccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHH
Confidence 888999999999999999999999999999999888663 22 34678999999888664 7888888877
Q ss_pred HHHHhhc-----------CCcCHHHHHhhhCCC
Q 021660 244 QSTHMAS-----------QQITEEAVYLCTGNP 265 (309)
Q Consensus 244 ~~~~~~~-----------~~i~~~~v~~~~~~~ 265 (309)
+.++..+ ..|+.+++...++..
T Consensus 309 ~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~~ 341 (543)
T 3m6a_A 309 AAICRKAAKAIVAEERKRITVTEKNLQDFIGKR 341 (543)
T ss_dssp HHHHHHHHHHHHTTCCSCCEECTTTTHHHHCSC
T ss_pred HHHHHHHHHHHHhcCCcceecCHHHHHHHhCCc
Confidence 6655422 247777887777654
No 61
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.74 E-value=3.1e-17 Score=156.22 Aligned_cols=217 Identities=12% Similarity=0.119 Sum_probs=150.5
Q ss_pred CCcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcc-----cccEEEEecC
Q 021660 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY-----HNMILELNAS 113 (309)
Q Consensus 39 ~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~-----~~~~~~~~~~ 113 (309)
-..+|.++++|..+++++|++..++.+.+.+......+++|+||||||||++++.+++.+.+... ...+..++..
T Consensus 172 ~~~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~ 251 (758)
T 1r6b_X 172 FTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIG 251 (758)
T ss_dssp SSCBHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC
T ss_pred HhHhHHHHHhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHH
Confidence 34568999999999999999999999999998887788999999999999999999999854321 2223333222
Q ss_pred CCc----chHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCC---------HHHHHHHHHHHHHhcCCceEEEEecC
Q 021660 114 DDR----GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT---------KDAQFALRRVIEKYTKNTRFALICNQ 180 (309)
Q Consensus 114 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~---------~~~~~~l~~~l~~~~~~~~~i~~~~~ 180 (309)
... ....+...+......... .++.+|+|||++.+. .+..+.|..+++ .....+|++++.
T Consensus 252 ~l~~~~~~~g~~e~~l~~~~~~~~~-----~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~~ 324 (758)
T 1r6b_X 252 SLLAGTKYRGDFEKRFKALLKQLEQ-----DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTY 324 (758)
T ss_dssp ---CCCCCSSCHHHHHHHHHHHHSS-----SSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEECH
T ss_pred HHhccccccchHHHHHHHHHHHHHh-----cCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeCc
Confidence 110 111222223322221111 146899999999983 122233333333 234566777764
Q ss_pred C-----cccchhhhcceeEEEecCCChHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhcC------CHHHHHHHHHH
Q 021660 181 V-----NKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA----EGLDVTEGGLAALVRLCNG------DMRKALNILQS 245 (309)
Q Consensus 181 ~-----~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~l~~i~~~~~g------~~r~~~~~l~~ 245 (309)
. ...++++.+||..+.|++|+.++..+++..++.. .++.++++++..+++.+.| .+..+++.++.
T Consensus 325 ~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~ 404 (758)
T 1r6b_X 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDE 404 (758)
T ss_dssp HHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHH
T ss_pred hHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHH
Confidence 3 2456789999999999999999999999887765 6788999999999988754 46678888866
Q ss_pred HHhh---------cCCcCHHHHHhhh
Q 021660 246 THMA---------SQQITEEAVYLCT 262 (309)
Q Consensus 246 ~~~~---------~~~i~~~~v~~~~ 262 (309)
++.. ...++.+++..++
T Consensus 405 a~~~~~~~~~~~~~~~v~~~di~~~~ 430 (758)
T 1r6b_X 405 AGARARLMPVSKRKKTVNVADIESVV 430 (758)
T ss_dssp HHHHHHHSSSCCCCCSCCHHHHHHHH
T ss_pred HHHHHhcccccccCCccCHHHHHHHH
Confidence 5532 2458888887665
No 62
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.74 E-value=2.4e-17 Score=156.78 Aligned_cols=194 Identities=15% Similarity=0.204 Sum_probs=139.4
Q ss_pred CcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCc-----ccccEEEEecCC
Q 021660 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-----YHNMILELNASD 114 (309)
Q Consensus 40 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-----~~~~~~~~~~~~ 114 (309)
...|.++++|..+++++|++..++.+..++.....++++|+||||||||++|+.+++.+.+.. .+..++.++...
T Consensus 167 ~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~ 246 (758)
T 3pxi_A 167 ARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT 246 (758)
T ss_dssp CCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----
T ss_pred HHHHHHHHhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccc
Confidence 456889999999999999999999999999988888899999999999999999999984432 133344444311
Q ss_pred C---cchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCc-----ccch
Q 021660 115 D---RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVN-----KIIP 186 (309)
Q Consensus 115 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~-----~l~~ 186 (309)
. .....+...+..... .++.+|+|| ...+.++.|...++ .....+|++||... .+++
T Consensus 247 ~~~G~~e~~l~~~~~~~~~---------~~~~iLfiD----~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~ 311 (758)
T 3pxi_A 247 KYRGEFEDRLKKVMDEIRQ---------AGNIILFID----AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDA 311 (758)
T ss_dssp ------CTTHHHHHHHHHT---------CCCCEEEEC----C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCS
T ss_pred cccchHHHHHHHHHHHHHh---------cCCEEEEEc----CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccH
Confidence 0 011123333333322 156799999 33345566666665 34667788887766 5789
Q ss_pred hhhcceeEEEecCCChHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhc------CCHHHHHHHHHHHHh
Q 021660 187 ALQSRCTRFRFAPLEPVHVTERLKHVIEA----EGLDVTEGGLAALVRLCN------GDMRKALNILQSTHM 248 (309)
Q Consensus 187 ~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~l~~i~~~~~------g~~r~~~~~l~~~~~ 248 (309)
++.+||..+.|++|+.++...+++..+.. .++.++++++..+++.+. ..++.++.+++.++.
T Consensus 312 al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~ 383 (758)
T 3pxi_A 312 ALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS 383 (758)
T ss_dssp HHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHH
T ss_pred HHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHH
Confidence 99999999999999999999999977665 578899999999998874 356788888876653
No 63
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.73 E-value=1.5e-16 Score=131.85 Aligned_cols=206 Identities=21% Similarity=0.238 Sum_probs=133.6
Q ss_pred hhcCCCCccccccChHHHHHHHHHHhcC------------CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEec
Q 021660 45 EKYRPQSLADVAAHRDIVDTIDRLTSEN------------RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (309)
Q Consensus 45 ~~~~p~~~~~~ig~~~~~~~l~~~~~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 112 (309)
....+.+|++++|.++.+..+.+....- ...+++|+||+|+|||++++.++..+ ...++.+++
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~-----~~~~i~~~~ 82 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA-----RVPFITASG 82 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT-----TCCEEEEEH
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh-----CCCEEEeeH
Confidence 3445567899999998888777664311 12349999999999999999999987 344555554
Q ss_pred CCCc--chHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH-----------HH---HHHHHHHHHHhcC-C-ceE
Q 021660 113 SDDR--GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DA---QFALRRVIEKYTK-N-TRF 174 (309)
Q Consensus 113 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~-----------~~---~~~l~~~l~~~~~-~-~~~ 174 (309)
.... ........+....+.... ..+.++++||++.+.. .. .+.++..++.... . ..+
T Consensus 83 ~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~ 157 (254)
T 1ixz_A 83 SDFVEMFVGVGAARVRDLFETAKR-----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVV 157 (254)
T ss_dssp HHHHHSCTTHHHHHHHHHHHHHTT-----SSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEE
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHh-----cCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEE
Confidence 3210 011111222222221110 1467999999976531 11 2334444443222 2 345
Q ss_pred EEEecCCcccchhhhc--ce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCH-HHHHHHHHHHHhh
Q 021660 175 ALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEG-GLAALVRLCNGDM-RKALNILQSTHMA 249 (309)
Q Consensus 175 i~~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~l~~i~~~~~g~~-r~~~~~l~~~~~~ 249 (309)
+.+++.++.+++++.+ || ..+.++.|+.++..++++.+++ +..++++ .+..+++.+.|+. +.+.++++.++..
T Consensus 158 ~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~ 235 (254)
T 1ixz_A 158 MAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALL 235 (254)
T ss_dssp EEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT--TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred EEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc--CCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 5567888889999987 56 7799999999999999987764 4455444 3788999999876 6777777766543
Q ss_pred c-----CCcCHHHHHhhh
Q 021660 250 S-----QQITEEAVYLCT 262 (309)
Q Consensus 250 ~-----~~i~~~~v~~~~ 262 (309)
+ ..|+.+++.+++
T Consensus 236 a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 236 AAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHTTCSSBCHHHHHHHT
T ss_pred HHHhcCCCcCHHHHHHHh
Confidence 2 468888887765
No 64
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.73 E-value=4.7e-17 Score=145.86 Aligned_cols=203 Identities=21% Similarity=0.274 Sum_probs=138.6
Q ss_pred CCCCccccccChHHHHHHHHHHhc-----------CC-CCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCC
Q 021660 48 RPQSLADVAAHRDIVDTIDRLTSE-----------NR-LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115 (309)
Q Consensus 48 ~p~~~~~~ig~~~~~~~l~~~~~~-----------~~-~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 115 (309)
.+.+|++++|.++.+..+.+.+.. .. +..++|+||||||||+++++++..+ ...++.+++...
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~-----~~~~i~i~g~~~ 100 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA-----RVPFITASGSDF 100 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT-----TCCEEEEEGGGG
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCEEEEehhHH
Confidence 567899999999999888777542 11 2349999999999999999999987 456667776532
Q ss_pred c--chHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH-----------HHHHHHHHHHHHh---c--CCceEEEE
Q 021660 116 R--GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKY---T--KNTRFALI 177 (309)
Q Consensus 116 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~-----------~~~~~l~~~l~~~---~--~~~~~i~~ 177 (309)
. ........+....+... ...+.+++|||++.+.. +....+..++... . ....++.+
T Consensus 101 ~~~~~g~~~~~v~~lfq~a~-----~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAa 175 (499)
T 2dhr_A 101 VEMFVGVGAARVRDLFETAK-----RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAA 175 (499)
T ss_dssp TSSCTTHHHHHHHHHTTTSS-----SSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEEC
T ss_pred HHhhhhhHHHHHHHHHHHHH-----hcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEe
Confidence 1 11222333333333211 11467999999987742 1123333444332 2 23455556
Q ss_pred ecCCcccchhhhc--ce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCH-HHHHHHHHHHHhhc--
Q 021660 178 CNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEG-GLAALVRLCNGDM-RKALNILQSTHMAS-- 250 (309)
Q Consensus 178 ~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~l~~i~~~~~g~~-r~~~~~l~~~~~~~-- 250 (309)
+|.++.+++++.+ || ..+.+++|+.++..++++.+++ +..++++ .+..++..+.|+. +.+.++++.++..+
T Consensus 176 tn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~--~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~ 253 (499)
T 2dhr_A 176 TNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAR 253 (499)
T ss_dssp CSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS--SSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTT
T ss_pred cCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 6888888888887 55 6799999999999999987654 4455544 4788999999988 78888887766533
Q ss_pred ---CCcCHHHHHhhh
Q 021660 251 ---QQITEEAVYLCT 262 (309)
Q Consensus 251 ---~~i~~~~v~~~~ 262 (309)
..|+.+++..++
T Consensus 254 ~~~~~It~~dl~~al 268 (499)
T 2dhr_A 254 EGRRKITMKDLEEAA 268 (499)
T ss_dssp TCCSSCCSHHHHHHH
T ss_pred hCCCccCHHHHHHHH
Confidence 368888887666
No 65
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.73 E-value=3.7e-18 Score=134.52 Aligned_cols=156 Identities=15% Similarity=0.168 Sum_probs=107.5
Q ss_pred CcChhhhcCCCCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCc-----ccccEEEEecCC
Q 021660 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-----YHNMILELNASD 114 (309)
Q Consensus 40 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-----~~~~~~~~~~~~ 114 (309)
..+|.++++|..+++++|++..++.+..++......+++|+||+|+|||++++.+++.+.... ....+..++...
T Consensus 9 ~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (187)
T 2p65_A 9 SRDLTALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSS 88 (187)
T ss_dssp EEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHH
T ss_pred HHHHHHHHhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHH
Confidence 456899999999999999999999999999887777899999999999999999999985421 123344443221
Q ss_pred C----cchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCC---------HHHHHHHHHHHHHhcCCceEEEEecCC
Q 021660 115 D----RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT---------KDAQFALRRVIEKYTKNTRFALICNQV 181 (309)
Q Consensus 115 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~---------~~~~~~l~~~l~~~~~~~~~i~~~~~~ 181 (309)
. .........+......... ..++.+|+|||++.+. .+..+.|..+++. ....+|++++..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~--~~~~ii~~~~~~ 162 (187)
T 2p65_A 89 LIAGAKYRGDFEERLKSILKEVQD----AEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR--GELRCIGATTVS 162 (187)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHH----TTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT--TCSCEEEEECHH
T ss_pred hhcCCCchhHHHHHHHHHHHHHHh----cCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc--CCeeEEEecCHH
Confidence 1 0111112222222111110 1146799999999986 3345566666653 356777777755
Q ss_pred c-----ccchhhhcceeEEEecCCC
Q 021660 182 N-----KIIPALQSRCTRFRFAPLE 201 (309)
Q Consensus 182 ~-----~l~~~l~~r~~~i~~~~~~ 201 (309)
. .+.+++.+||..+.+++|+
T Consensus 163 ~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 163 EYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp HHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred HHHHHHhccHHHHHhcCcccCCCCC
Confidence 4 5789999999889998875
No 66
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.72 E-value=9e-17 Score=140.82 Aligned_cols=204 Identities=19% Similarity=0.230 Sum_probs=135.3
Q ss_pred ccccChHHHHHHHHHHh----c--------------------------CCCCeEEEECCCCCcHHHHHHHHHHHHccCcc
Q 021660 54 DVAAHRDIVDTIDRLTS----E--------------------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQY 103 (309)
Q Consensus 54 ~~ig~~~~~~~l~~~~~----~--------------------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~ 103 (309)
.++|++.+++.+..++. . ....+++|+||||||||++|+.+++.+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l----- 96 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL----- 96 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT-----
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh-----
Confidence 58999999998887762 1 123459999999999999999999998
Q ss_pred cccEEEEecCCCcc----hHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHH--------------HHHHHHHHH
Q 021660 104 HNMILELNASDDRG----IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD--------------AQFALRRVI 165 (309)
Q Consensus 104 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~--------------~~~~l~~~l 165 (309)
+..++.+++..... .......+..........+ ....+.+|+|||++.+... .++.|+.++
T Consensus 97 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~l 175 (376)
T 1um8_A 97 DIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNV-QKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIV 175 (376)
T ss_dssp TCCEEEEEGGGCC--------CTHHHHHHHHHTTTCH-HHHTTSEEEEETGGGC--------------CHHHHHHHHHHH
T ss_pred CCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchh-hhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHh
Confidence 45566666543211 0111111222211111000 0114679999999999877 889999999
Q ss_pred HHhc---------------------CCceEEEEecC-----------------------------------------Ccc
Q 021660 166 EKYT---------------------KNTRFALICNQ-----------------------------------------VNK 183 (309)
Q Consensus 166 ~~~~---------------------~~~~~i~~~~~-----------------------------------------~~~ 183 (309)
+... .+..+|++++. ...
T Consensus 176 e~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 255 (376)
T 1um8_A 176 EGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYG 255 (376)
T ss_dssp HCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTT
T ss_pred hccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcC
Confidence 9531 23455655541 112
Q ss_pred cchhhhcce-eEEEecCCChHHHHHHHHH----HHH-------H--cCCCCCHHHHHHHHHHhc---CCHHHHHHHHHHH
Q 021660 184 IIPALQSRC-TRFRFAPLEPVHVTERLKH----VIE-------A--EGLDVTEGGLAALVRLCN---GDMRKALNILQST 246 (309)
Q Consensus 184 l~~~l~~r~-~~i~~~~~~~~~~~~~l~~----~~~-------~--~~~~~~~~~l~~i~~~~~---g~~r~~~~~l~~~ 246 (309)
+.+.+.+|+ .++.|++++.+++..++.. ++. . .++.+++++++.|++++. |++|.+.+.++.+
T Consensus 256 ~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~ 335 (376)
T 1um8_A 256 LIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDF 335 (376)
T ss_dssp CCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHH
T ss_pred CChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHH
Confidence 457888998 8899999999999998862 211 1 235689999999999965 9999999999877
Q ss_pred Hhhc-----C------CcCHHHHHhhhC
Q 021660 247 HMAS-----Q------QITEEAVYLCTG 263 (309)
Q Consensus 247 ~~~~-----~------~i~~~~v~~~~~ 263 (309)
.... . .||.+++.....
T Consensus 336 ~~~~~~~~~~~~~~~~~i~~~~v~~~~~ 363 (376)
T 1um8_A 336 CLDIMFDLPKLKGSEVRITKDCVLKQAE 363 (376)
T ss_dssp HHHHHHTGGGGTTSEEEECHHHHTTSSC
T ss_pred HHHHHhhccCCCCCEEEEeHHHhcCCCC
Confidence 6531 1 478888776553
No 67
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.72 E-value=4e-16 Score=138.31 Aligned_cols=217 Identities=18% Similarity=0.241 Sum_probs=140.1
Q ss_pred hhhhcCCCCccccccChHHHHHHHHHH-h----c--CCCCeEEE--ECCCCCcHHHHHHHHHHHHccC----cccccEEE
Q 021660 43 WVEKYRPQSLADVAAHRDIVDTIDRLT-S----E--NRLPHLLL--YGPPGTGKTSTILAVARKLYGA----QYHNMILE 109 (309)
Q Consensus 43 ~~~~~~p~~~~~~ig~~~~~~~l~~~~-~----~--~~~~~~ll--~G~~G~GKT~l~~~l~~~~~~~----~~~~~~~~ 109 (309)
+...|.| +.++|++..++.+..++ . + .....++| +||+|+|||++++.+++.+... +....++.
T Consensus 15 ~~~~~~p---~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~ 91 (412)
T 1w5s_A 15 FDENYIP---PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAY 91 (412)
T ss_dssp GSTTCCC---SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCccCC---CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEE
Confidence 3344444 67899999999888877 4 2 23445889 9999999999999999987432 12344566
Q ss_pred EecCCCcchHHH-HHHHHHhhhcccc--------------ccCCCCccEEEEEeCCCCCCH------HHHHHHHHHHHHh
Q 021660 110 LNASDDRGIDVV-RQQIQDFASTQSF--------------SFGVKASVKLVLLDEADAMTK------DAQFALRRVIEKY 168 (309)
Q Consensus 110 ~~~~~~~~~~~~-~~~~~~~~~~~~~--------------~~~~~~~~~lliiDe~~~l~~------~~~~~l~~~l~~~ 168 (309)
+++........+ ...+..+....+. .+.....+.+|+|||++.+.. +....+..++...
T Consensus 92 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~ 171 (412)
T 1w5s_A 92 VNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEI 171 (412)
T ss_dssp EEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHS
T ss_pred EECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhc
Confidence 665322222221 1111111100000 000012467999999998753 4555666777654
Q ss_pred c-----CCceEEEEecCCc---ccc---hhhhcce-eEEEecCCChHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHhc-
Q 021660 169 T-----KNTRFALICNQVN---KII---PALQSRC-TRFRFAPLEPVHVTERLKHVIEAEG--LDVTEGGLAALVRLCN- 233 (309)
Q Consensus 169 ~-----~~~~~i~~~~~~~---~l~---~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~l~~i~~~~~- 233 (309)
+ ....+|++++... .+. +.+.+++ ..+.|+|++.+++.+++..++...+ ..++++++..+++.++
T Consensus 172 ~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~ 251 (412)
T 1w5s_A 172 PSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGE 251 (412)
T ss_dssp CCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCG
T ss_pred ccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHH
Confidence 4 3445666776543 222 4455555 4499999999999999998876543 3578999999999999
Q ss_pred -----CCHHHHHHHHHHHHhhc-----CCcCHHHHHhhh
Q 021660 234 -----GDMRKALNILQSTHMAS-----QQITEEAVYLCT 262 (309)
Q Consensus 234 -----g~~r~~~~~l~~~~~~~-----~~i~~~~v~~~~ 262 (309)
|+|+.+..+++.+...+ ..++.+++..++
T Consensus 252 ~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~ 290 (412)
T 1w5s_A 252 DKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAV 290 (412)
T ss_dssp GGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 99999999987654322 357777765443
No 68
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.71 E-value=9.7e-16 Score=128.65 Aligned_cols=203 Identities=21% Similarity=0.250 Sum_probs=133.1
Q ss_pred CCCCccccccChHHHHHHHHHHhcC------------CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCC
Q 021660 48 RPQSLADVAAHRDIVDTIDRLTSEN------------RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115 (309)
Q Consensus 48 ~p~~~~~~ig~~~~~~~l~~~~~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 115 (309)
.+.+|++++|.++.+..+.+....- ....++|+||+|+|||++++.++..+ ...++.+++...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~-----~~~~i~~~~~~~ 109 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA-----RVPFITASGSDF 109 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT-----TCCEEEEEHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc-----CCCEEEecHHHH
Confidence 5568999999999988777665321 12349999999999999999999987 344555554321
Q ss_pred c--chHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCC-----------HHHHHHHHHHHHHhc---C--CceEEEE
Q 021660 116 R--GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT-----------KDAQFALRRVIEKYT---K--NTRFALI 177 (309)
Q Consensus 116 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~-----------~~~~~~l~~~l~~~~---~--~~~~i~~ 177 (309)
. ........+....+.... ..+.++++||++.+. ......+..++.... . ...++.+
T Consensus 110 ~~~~~~~~~~~i~~~~~~~~~-----~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~ 184 (278)
T 1iy2_A 110 VEMFVGVGAARVRDLFETAKR-----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAA 184 (278)
T ss_dssp HHSTTTHHHHHHHHHHHHHHT-----SCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEE
T ss_pred HHHHhhHHHHHHHHHHHHHHh-----cCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEe
Confidence 0 011111222222221110 136799999997652 122333444444332 1 2345556
Q ss_pred ecCCcccchhhhc--ce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCH-HHHHHHHHHHHhhc--
Q 021660 178 CNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEG-GLAALVRLCNGDM-RKALNILQSTHMAS-- 250 (309)
Q Consensus 178 ~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~l~~i~~~~~g~~-r~~~~~l~~~~~~~-- 250 (309)
++.++.+++++.+ || ..+.+++|+.++..++++.+++ +..++++ .+..+++.+.|+. +.+.++++.+...+
T Consensus 185 t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~ 262 (278)
T 1iy2_A 185 TNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAR 262 (278)
T ss_dssp ESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT--TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc--cCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 7888889999887 56 7799999999999999987764 3455443 4788999999977 66777777665432
Q ss_pred ---CCcCHHHHHhhh
Q 021660 251 ---QQITEEAVYLCT 262 (309)
Q Consensus 251 ---~~i~~~~v~~~~ 262 (309)
..|+.+++.+++
T Consensus 263 ~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 263 EGRRKITMKDLEEAA 277 (278)
T ss_dssp TTCCSBCHHHHHHHT
T ss_pred hCCCCcCHHHHHHHh
Confidence 468888887765
No 69
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.71 E-value=1e-16 Score=152.58 Aligned_cols=185 Identities=21% Similarity=0.295 Sum_probs=134.0
Q ss_pred cccccChHHHHHHHHHHhcCC-------CC--eEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHH-H
Q 021660 53 ADVAAHRDIVDTIDRLTSENR-------LP--HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVV-R 122 (309)
Q Consensus 53 ~~~ig~~~~~~~l~~~~~~~~-------~~--~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 122 (309)
..++|++..++.+...+.... .+ +++|+||||||||++|+++++.+... ...++.+++......... .
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~~~~~~~~~~ 568 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSEYMEKHSTSG 568 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGGGCSSCCCC-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechhccccccccc
Confidence 568999999988887776321 12 59999999999999999999998443 345666666532211000 0
Q ss_pred HHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHH-----------hcCCceEEEEecCCcc--------
Q 021660 123 QQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEK-----------YTKNTRFALICNQVNK-------- 183 (309)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~-----------~~~~~~~i~~~~~~~~-------- 183 (309)
..+...... ..+++|+|||++.+.++.++.|++++++ ...++++|++||....
T Consensus 569 ~~l~~~~~~--------~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~ 640 (758)
T 3pxi_A 569 GQLTEKVRR--------KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGE 640 (758)
T ss_dssp --CHHHHHH--------CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHH
T ss_pred chhhHHHHh--------CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHH
Confidence 111111111 1357999999999999999999999997 2346788888885432
Q ss_pred ----cchhhhcce-eEEEecCCChHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHH---hcCCHHHHHHHHHHH
Q 021660 184 ----IIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAE---------GLDVTEGGLAALVRL---CNGDMRKALNILQST 246 (309)
Q Consensus 184 ----l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~l~~i~~~---~~g~~r~~~~~l~~~ 246 (309)
+.+.+.+|+ .++.|+|++.+++..++...+.+. .+.+++++++.|++. ..|+.|.+.+.++..
T Consensus 641 ~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~ 720 (758)
T 3pxi_A 641 LKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKH 720 (758)
T ss_dssp HHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHH
T ss_pred HHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHH
Confidence 678899999 899999999999999988877652 346899999999886 368899888888765
Q ss_pred H
Q 021660 247 H 247 (309)
Q Consensus 247 ~ 247 (309)
.
T Consensus 721 v 721 (758)
T 3pxi_A 721 V 721 (758)
T ss_dssp T
T ss_pred H
Confidence 4
No 70
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.71 E-value=1.8e-16 Score=146.78 Aligned_cols=218 Identities=17% Similarity=0.206 Sum_probs=147.2
Q ss_pred hhhcCCCCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCC--------
Q 021660 44 VEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD-------- 115 (309)
Q Consensus 44 ~~~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~-------- 115 (309)
..+|+|..+++++|+..+++.+...+..+ .+++|+||+|+|||++++.++..+.........+..+....
T Consensus 32 ~~~~rp~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~ 109 (604)
T 3k1j_A 32 EIEVPEKLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTV 109 (604)
T ss_dssp GSCCCSSHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEE
T ss_pred cccccccccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEE
Confidence 46799999999999999999999999887 46999999999999999999998754331111111111000
Q ss_pred --cchHHHHHHHHH----------------------------------------------hhhcc---------------
Q 021660 116 --RGIDVVRQQIQD----------------------------------------------FASTQ--------------- 132 (309)
Q Consensus 116 --~~~~~~~~~~~~----------------------------------------------~~~~~--------------- 132 (309)
.....+...... +....
T Consensus 110 p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~ 189 (604)
T 3k1j_A 110 PACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAH 189 (604)
T ss_dssp ETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCGG
T ss_pred ecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCcccccc
Confidence 000000000000 00000
Q ss_pred ---ccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHh---------------------cCCceEEEEecCC--cccch
Q 021660 133 ---SFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY---------------------TKNTRFALICNQV--NKIIP 186 (309)
Q Consensus 133 ---~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~---------------------~~~~~~i~~~~~~--~~l~~ 186 (309)
....-..+++++|+|||++.+.+..++.|+.+|+.. +.++++|+++|.. ..+.+
T Consensus 190 ~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~ 269 (604)
T 3k1j_A 190 ERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHP 269 (604)
T ss_dssp GGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCH
T ss_pred ccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcCH
Confidence 000001124569999999999999999999999942 2355688888865 57889
Q ss_pred hhhccee----EEEecCC---ChHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHh---cC-------CHHHHHHHHH
Q 021660 187 ALQSRCT----RFRFAPL---EPVHVTERLKHVIEAE-----GLDVTEGGLAALVRLC---NG-------DMRKALNILQ 244 (309)
Q Consensus 187 ~l~~r~~----~i~~~~~---~~~~~~~~l~~~~~~~-----~~~~~~~~l~~i~~~~---~g-------~~r~~~~~l~ 244 (309)
++.+||. .+.|+.. ....+..++...++.. ...++++++..+++++ .| ++|.+.++++
T Consensus 270 ~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr 349 (604)
T 3k1j_A 270 ALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVR 349 (604)
T ss_dssp HHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHH
T ss_pred HHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHH
Confidence 9999983 4555432 3455666665555432 2578999999999976 56 6999999998
Q ss_pred HHHhhc-----CCcCHHHHHhhhC
Q 021660 245 STHMAS-----QQITEEAVYLCTG 263 (309)
Q Consensus 245 ~~~~~~-----~~i~~~~v~~~~~ 263 (309)
.+...+ ..|+.+++..++.
T Consensus 350 ~A~~~A~~~~~~~I~~edv~~A~~ 373 (604)
T 3k1j_A 350 AAGDIAVKKGKKYVEREDVIEAVK 373 (604)
T ss_dssp HHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHhcCcccccHHHHHHHHH
Confidence 766432 5799999988874
No 71
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.70 E-value=3.1e-16 Score=149.39 Aligned_cols=184 Identities=17% Similarity=0.215 Sum_probs=134.3
Q ss_pred ccccccChHHHHHHHHHHhcC--------CC-CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcc-----
Q 021660 52 LADVAAHRDIVDTIDRLTSEN--------RL-PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG----- 117 (309)
Q Consensus 52 ~~~~ig~~~~~~~l~~~~~~~--------~~-~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~----- 117 (309)
...++|++..++.+...+... ++ .+++|+||||||||++++.+++.+ +..++.+++.....
T Consensus 457 ~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l-----~~~~~~i~~s~~~~~~~~~ 531 (758)
T 1r6b_X 457 KMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL-----GIELLRFDMSEYMERHTVS 531 (758)
T ss_dssp TTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH-----TCEEEEEEGGGCSSSSCCS
T ss_pred HhhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh-----cCCEEEEechhhcchhhHh
Confidence 346899999998887776532 12 259999999999999999999998 45566666543211
Q ss_pred ---------hH-HHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCceEEE
Q 021660 118 ---------ID-VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFAL 176 (309)
Q Consensus 118 ---------~~-~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~~i~ 176 (309)
.. .....+...... ..+.+|+|||++.+.++.++.|+.++++.. .++.+|+
T Consensus 532 ~l~g~~~g~~g~~~~~~l~~~~~~--------~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~ 603 (758)
T 1r6b_X 532 RLIGAPPGYVGFDQGGLLTDAVIK--------HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVM 603 (758)
T ss_dssp SSCCCCSCSHHHHHTTHHHHHHHH--------CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEE
T ss_pred hhcCCCCCCcCccccchHHHHHHh--------CCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEE
Confidence 00 000111111111 146899999999999999999999999642 3566888
Q ss_pred EecCCc-------------------------ccchhhhcce-eEEEecCCChHHHHHHHHHHHHHc---------CCCCC
Q 021660 177 ICNQVN-------------------------KIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAE---------GLDVT 221 (309)
Q Consensus 177 ~~~~~~-------------------------~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~---------~~~~~ 221 (309)
++|... .+.+.+.+|+ .++.|++++.+++..++..++.+. .+.++
T Consensus 604 tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 683 (758)
T 1r6b_X 604 TTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVS 683 (758)
T ss_dssp EECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEEC
T ss_pred ecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeC
Confidence 887632 5568889999 889999999999999999887643 34689
Q ss_pred HHHHHHHHHHh---cCCHHHHHHHHHHHHh
Q 021660 222 EGGLAALVRLC---NGDMRKALNILQSTHM 248 (309)
Q Consensus 222 ~~~l~~i~~~~---~g~~r~~~~~l~~~~~ 248 (309)
+++++.++++. .++.|.+.+.++....
T Consensus 684 ~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~ 713 (758)
T 1r6b_X 684 QEARNWLAEKGYDRAMGARPMARVIQDNLK 713 (758)
T ss_dssp HHHHHHHHHHHCBTTTBTTTHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcCCCchHHHHHHHHHHH
Confidence 99999999876 4458888888776653
No 72
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.69 E-value=2.5e-16 Score=147.78 Aligned_cols=179 Identities=20% Similarity=0.264 Sum_probs=127.1
Q ss_pred CCCCccccccChHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCC
Q 021660 48 RPQSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (309)
Q Consensus 48 ~p~~~~~~ig~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 114 (309)
....|+++.|.++.++.|++++.. ..+..+||+||||||||++|+++|+++ +..++.+++..
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el-----g~~~~~v~~~~ 273 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-----GAFFFLINGPE 273 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT-----TCEEEEEEHHH
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh-----CCeEEEEEhHH
Confidence 345799999999999988887641 123349999999999999999999998 67777777653
Q ss_pred C--cchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH-----------HHHHHHHHHHHHhc--CCceEEEEec
Q 021660 115 D--RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKYT--KNTRFALICN 179 (309)
Q Consensus 115 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~-----------~~~~~l~~~l~~~~--~~~~~i~~~~ 179 (309)
. .........+........ ...+.||+|||+|.+.+ ...+.|+..|+... ..+.+|.+||
T Consensus 274 l~sk~~gese~~lr~lF~~A~-----~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN 348 (806)
T 3cf2_A 274 IMSKLAGESESNLRKAFEEAE-----KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN 348 (806)
T ss_dssp HHSSCTTHHHHHHHHHHHHHT-----TSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECS
T ss_pred hhcccchHHHHHHHHHHHHHH-----HcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecC
Confidence 1 111222222333222111 11578999999999863 23466777777643 3556777889
Q ss_pred CCcccchhhhc--ce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHH
Q 021660 180 QVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMR 237 (309)
Q Consensus 180 ~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r 237 (309)
.++.+++++++ || ..++++.|+..+..++++.+++..... ++..+..+++.+.|...
T Consensus 349 ~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~T~Gfsg 408 (806)
T 3cf2_A 349 RPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVG 408 (806)
T ss_dssp STTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHHCCSCCH
T ss_pred ChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhcCCCCH
Confidence 99999999988 78 789999999999999998776543222 23457889999877543
No 73
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.68 E-value=2.4e-15 Score=134.95 Aligned_cols=204 Identities=12% Similarity=0.102 Sum_probs=131.4
Q ss_pred cccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHH--HHHhhh
Q 021660 53 ADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQ--IQDFAS 130 (309)
Q Consensus 53 ~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 130 (309)
..++|++++++.+...+..+ .+++|+||||||||++|+.+++.+.. ...+....+... ....+... ......
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~~---~~~f~~~~~~~~-t~~dL~G~~~~~~~~~ 95 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQN---ARAFEYLMTRFS-TPEEVFGPLSIQALKD 95 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBSS---CCEEEEECCTTC-CHHHHHCCBC------
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHhh---hhHHHHHHHhcC-CHHHhcCcccHHHHhh
Confidence 46899999999998888776 46999999999999999999998722 122333333221 11111100 000000
Q ss_pred cccc-ccCC--CCccEEEEEeCCCCCCHHHHHHHHHHHHHhc----------CCceEEEEecCCcc---cchhhhcce-e
Q 021660 131 TQSF-SFGV--KASVKLVLLDEADAMTKDAQFALRRVIEKYT----------KNTRFALICNQVNK---IIPALQSRC-T 193 (309)
Q Consensus 131 ~~~~-~~~~--~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~----------~~~~~i~~~~~~~~---l~~~l~~r~-~ 193 (309)
.... .+.. ...+.+|+|||++.+++..++.|+.++++.. +...+|++||..+. ..+++.+|| .
T Consensus 96 ~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLldRF~~ 175 (500)
T 3nbx_X 96 EGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYDRMLI 175 (500)
T ss_dssp ----CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHTTCCE
T ss_pred chhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHHHHHH
Confidence 0000 0111 0135689999999999999999999998421 12234677775432 345888998 6
Q ss_pred EEEecCCCh-HHHHHHHHHHH-----------------------HHcCCCCCHHHHHHHHHHh----------cCCHHHH
Q 021660 194 RFRFAPLEP-VHVTERLKHVI-----------------------EAEGLDVTEGGLAALVRLC----------NGDMRKA 239 (309)
Q Consensus 194 ~i~~~~~~~-~~~~~~l~~~~-----------------------~~~~~~~~~~~l~~i~~~~----------~g~~r~~ 239 (309)
.+.+++|+. ++...++.... ...++.+++++++++++.. +.++|.+
T Consensus 176 ~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~ 255 (500)
T 3nbx_X 176 RLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRW 255 (500)
T ss_dssp EEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHH
T ss_pred HHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccchhHH
Confidence 688888887 55667665532 1236778999999998876 4588887
Q ss_pred HHHHHHHHhhc-----CCcCHHHHHhhhC
Q 021660 240 LNILQSTHMAS-----QQITEEAVYLCTG 263 (309)
Q Consensus 240 ~~~l~~~~~~~-----~~i~~~~v~~~~~ 263 (309)
+..+..+...+ +.++.+++. ++.
T Consensus 256 ~~llr~A~A~A~l~gr~~Vt~eDv~-~a~ 283 (500)
T 3nbx_X 256 KKAIRLLQASAFFSGRSAVAPVDLI-LLK 283 (500)
T ss_dssp HHHHHHHHHHHHHTTCSBCCGGGGG-GGG
T ss_pred HHHHHHHHHHHhhcCCccccchHHH-HHH
Confidence 77775544322 468888888 443
No 74
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.65 E-value=4.2e-16 Score=149.90 Aligned_cols=186 Identities=18% Similarity=0.269 Sum_probs=135.8
Q ss_pred cccccChHHHHHHHHHHhcCC--------C-CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHH-
Q 021660 53 ADVAAHRDIVDTIDRLTSENR--------L-PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVR- 122 (309)
Q Consensus 53 ~~~ig~~~~~~~l~~~~~~~~--------~-~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 122 (309)
..++|++..++.+...+...+ + .+++|+||+|||||++|+.+++.+.+.+ ..++.+++..........
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~--~~~i~i~~~~~~~~~~~s~ 635 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE--EAMIRIDMTEYMEKHAVSR 635 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSG--GGEEEECTTTCCSSGGGGG
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC--CcEEEEechhccchhHHHH
Confidence 568999999998887775421 1 2599999999999999999999985533 456666765432110000
Q ss_pred --------------HHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCceEEEE
Q 021660 123 --------------QQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALI 177 (309)
Q Consensus 123 --------------~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~~i~~ 177 (309)
..+..... ...+++|+|||++.+.++.++.|+.++++.. .++.+|++
T Consensus 636 l~g~~~~~~G~~~~g~l~~~~~--------~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~t 707 (854)
T 1qvr_A 636 LIGAPPGYVGYEEGGQLTEAVR--------RRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILT 707 (854)
T ss_dssp C--------------CHHHHHH--------HCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEE
T ss_pred HcCCCCCCcCccccchHHHHHH--------hCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEe
Confidence 00111111 0136799999999999999999999999643 24558888
Q ss_pred ecCC--------------------------cccchhhhcce-eEEEecCCChHHHHHHHHHHHHHc---------CCCCC
Q 021660 178 CNQV--------------------------NKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAE---------GLDVT 221 (309)
Q Consensus 178 ~~~~--------------------------~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~---------~~~~~ 221 (309)
||.. ..+.+.|.+|+ .++.|.|++.+++..++...+.+. .+.++
T Consensus 708 sn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~ 787 (854)
T 1qvr_A 708 SNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELT 787 (854)
T ss_dssp CCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEEC
T ss_pred cCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEEC
Confidence 8851 23456788898 788999999999999988877632 24689
Q ss_pred HHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 021660 222 EGGLAALVRLCN---GDMRKALNILQSTHM 248 (309)
Q Consensus 222 ~~~l~~i~~~~~---g~~r~~~~~l~~~~~ 248 (309)
+++++.|++++. |++|.+.+.++....
T Consensus 788 ~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~ 817 (854)
T 1qvr_A 788 EAAKDFLAERGYDPVFGARPLRRVIQRELE 817 (854)
T ss_dssp HHHHHHHHHHHCBTTTBTSTHHHHHHHHTH
T ss_pred HHHHHHHHHcCCCCCCChHHHHHHHHHHHH
Confidence 999999999864 999999999987654
No 75
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.63 E-value=8.8e-16 Score=133.86 Aligned_cols=189 Identities=22% Similarity=0.271 Sum_probs=126.1
Q ss_pred ccccChHHHHHHHHHHh-------------cC--CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcch
Q 021660 54 DVAAHRDIVDTIDRLTS-------------EN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 118 (309)
Q Consensus 54 ~~ig~~~~~~~l~~~~~-------------~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 118 (309)
.++|++.+++.+...+. .. ...+++|+||||||||++|+.+++.+ +..++.+++......
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~-----~~~~~~~~~~~l~~~ 90 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL-----DVPFTMADATTLTEA 90 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT-----TCCEEEEEHHHHTTC
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCCEEEechHHhccc
Confidence 47999999999888873 11 23459999999999999999999998 566777776532211
Q ss_pred ----HHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHH--------------HHHHHHHHHHHh------------
Q 021660 119 ----DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD--------------AQFALRRVIEKY------------ 168 (309)
Q Consensus 119 ----~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~--------------~~~~l~~~l~~~------------ 168 (309)
......+..........+ ....+.+|+|||++.+... .++.|+.+|+..
T Consensus 91 ~~~g~~~~~~~~~~~~~~~~~~-~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~ 169 (363)
T 3hws_A 91 GYVGEDVENIIQKLLQKCDYDV-QKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKH 169 (363)
T ss_dssp HHHHHHHTHHHHHHHHHTTTCH-HHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC------------
T ss_pred ccccccHHHHHHHHHHHhhhhH-HhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCcccccc
Confidence 111222222222111100 0114679999999988765 789999999821
Q ss_pred ---------cCCceEEEEecCC----------cc-----------------------------------cchhhhcce-e
Q 021660 169 ---------TKNTRFALICNQV----------NK-----------------------------------IIPALQSRC-T 193 (309)
Q Consensus 169 ---------~~~~~~i~~~~~~----------~~-----------------------------------l~~~l~~r~-~ 193 (309)
..+..+|++++.. .. +.+.+.+|+ .
T Consensus 170 ~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~ 249 (363)
T 3hws_A 170 PQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPV 249 (363)
T ss_dssp ----CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCE
T ss_pred CCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCe
Confidence 1223445554421 11 567888999 6
Q ss_pred EEEecCCChHHHHHHHHH----HHH-------HcC--CCCCHHHHHHHHHHh---cCCHHHHHHHHHHHHh
Q 021660 194 RFRFAPLEPVHVTERLKH----VIE-------AEG--LDVTEGGLAALVRLC---NGDMRKALNILQSTHM 248 (309)
Q Consensus 194 ~i~~~~~~~~~~~~~l~~----~~~-------~~~--~~~~~~~l~~i~~~~---~g~~r~~~~~l~~~~~ 248 (309)
++.|.|++.+++.+++.. .++ ..+ +.+++++++.|++.+ +++.|.+.+.++.+..
T Consensus 250 ~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~ 320 (363)
T 3hws_A 250 VATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALL 320 (363)
T ss_dssp EEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHH
Confidence 677999999998888765 222 223 357999999999753 5778888888877664
No 76
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.61 E-value=5.6e-14 Score=117.29 Aligned_cols=173 Identities=18% Similarity=0.202 Sum_probs=109.2
Q ss_pred CCCccccccChHHHHHHHHHHh------------c-CCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCC
Q 021660 49 PQSLADVAAHRDIVDTIDRLTS------------E-NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115 (309)
Q Consensus 49 p~~~~~~ig~~~~~~~l~~~~~------------~-~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 115 (309)
..+|+++.|.+++++.+.+.+. + .....++|+||||+|||++++.++..+ ...++.++....
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~-----~~~~i~i~g~~l 80 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES-----GLNFISVKGPEL 80 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT-----TCEEEEEETTTT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc-----CCCEEEEEcHHH
Confidence 4578899999999998887542 1 112349999999999999999999987 445677776543
Q ss_pred cc--hHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHH-----------HHHHHHHHHHHhc--CCceEEEEecC
Q 021660 116 RG--IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD-----------AQFALRRVIEKYT--KNTRFALICNQ 180 (309)
Q Consensus 116 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~-----------~~~~l~~~l~~~~--~~~~~i~~~~~ 180 (309)
.. .......+......... ..+.++++||++.+... ..+.++..|.... ....++.++|.
T Consensus 81 ~~~~~~~~~~~i~~vf~~a~~-----~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~ 155 (274)
T 2x8a_A 81 LNMYVGESERAVRQVFQRAKN-----SAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNR 155 (274)
T ss_dssp CSSTTHHHHHHHHHHHHHHHH-----TCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESC
T ss_pred HhhhhhHHHHHHHHHHHHHHh-----cCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCC
Confidence 21 12222333333322110 14679999999986421 1234444444322 23455667799
Q ss_pred Ccccchhhhc--ce-eEEEecCCChHHHHHHHHHHHHHc-CCCCC-HHHHHHHHHH
Q 021660 181 VNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAE-GLDVT-EGGLAALVRL 231 (309)
Q Consensus 181 ~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~-~~~~~-~~~l~~i~~~ 231 (309)
++.+++++.+ || ..+.++.|+.++..++++.+++.. ...++ +..+..+++.
T Consensus 156 p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~ 211 (274)
T 2x8a_A 156 PDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGD 211 (274)
T ss_dssp GGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTC
T ss_pred hhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHh
Confidence 9999999987 88 889999999999999999876542 22222 3346667764
No 77
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.61 E-value=4.9e-16 Score=145.76 Aligned_cols=178 Identities=19% Similarity=0.268 Sum_probs=111.2
Q ss_pred CCCccccccChHHHHHHHHHHhcC-------------CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCC-
Q 021660 49 PQSLADVAAHRDIVDTIDRLTSEN-------------RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD- 114 (309)
Q Consensus 49 p~~~~~~ig~~~~~~~l~~~~~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~- 114 (309)
...++++.|.+++++.+.+.+... .+..+|||||||||||.+|+++|.++ +..++.++...
T Consensus 473 ~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~-----~~~f~~v~~~~l 547 (806)
T 3cf2_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISIKGPEL 547 (806)
T ss_dssp CCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT-----TCEEEECCHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh-----CCceEEeccchh
Confidence 446889999999999998876421 12239999999999999999999998 66666665432
Q ss_pred -----CcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHH--------------HHHHHHHHHHHhcC--Cce
Q 021660 115 -----DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD--------------AQFALRRVIEKYTK--NTR 173 (309)
Q Consensus 115 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~--------------~~~~l~~~l~~~~~--~~~ 173 (309)
..+...++..+...... .++||+|||+|.+... ..+.|+..|+.... .+.
T Consensus 548 ~s~~vGese~~vr~lF~~Ar~~---------~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~ 618 (806)
T 3cf2_A 548 LTMWFGESEANVREIFDKARQA---------APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 618 (806)
T ss_dssp HTTTCSSCHHHHHHHHHHHHTT---------CSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEE
T ss_pred hccccchHHHHHHHHHHHHHHc---------CCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEE
Confidence 12233444444433221 5789999999988532 24567777875543 345
Q ss_pred EEEEecCCcccchhhhc--ce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC----CHHHHHH
Q 021660 174 FALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG----DMRKALN 241 (309)
Q Consensus 174 ~i~~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g----~~r~~~~ 241 (309)
+|.+||.++.+++++++ || ..++++.|+.++..++++.++++..+. ++..++.|++.+.| ++..+.+
T Consensus 619 vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~~la~~t~g~SGadi~~l~~ 692 (806)
T 3cf2_A 619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQ 692 (806)
T ss_dssp EECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC----------------CHHHHHH
T ss_pred EEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCCHHHHHHHHH
Confidence 56678999999999998 88 789999999999999998877544322 22346777776654 5554443
No 78
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.61 E-value=2.7e-14 Score=120.56 Aligned_cols=148 Identities=16% Similarity=0.217 Sum_probs=94.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCc------chHHHHHHHHHhhhccccccCCCCccEEEEEeC
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDE 149 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe 149 (309)
.++|+||||||||++++++++.+ +..++.+++.... ....+...+........ ...+.+|+|||
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l-----~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~-----~~~~~vl~iDE 107 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIR-----KGNMCCLFIND 107 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH-----TCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHT-----TSSCCCEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHh-----cCCCeEEEEec
Confidence 49999999999999999999998 5666777654311 11222222222211000 12578999999
Q ss_pred CCCCCHH-------------HHHHHHHHHHHh-------------cCCceEEEEecCCcccchhhhc--ceeEEEecCCC
Q 021660 150 ADAMTKD-------------AQFALRRVIEKY-------------TKNTRFALICNQVNKIIPALQS--RCTRFRFAPLE 201 (309)
Q Consensus 150 ~~~l~~~-------------~~~~l~~~l~~~-------------~~~~~~i~~~~~~~~l~~~l~~--r~~~i~~~~~~ 201 (309)
+|.+... ..+.|+.+++.. ..++.+|++||..+.+++++.+ |+..+.+ .|+
T Consensus 108 iD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~-~P~ 186 (293)
T 3t15_A 108 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APT 186 (293)
T ss_dssp CC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE-CCC
T ss_pred hhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe-CcC
Confidence 9988641 237788887621 2357888899999999999886 6644333 469
Q ss_pred hHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC-CH
Q 021660 202 PVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DM 236 (309)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g-~~ 236 (309)
.++..++++.++...+ ++.+.+..+.....| ++
T Consensus 187 ~~~r~~Il~~~~~~~~--~~~~~l~~~~~~~~~~~l 220 (293)
T 3t15_A 187 REDRIGVCTGIFRTDN--VPAEDVVKIVDNFPGQSI 220 (293)
T ss_dssp HHHHHHHHHHHHGGGC--CCHHHHHHHHHHSCSCCH
T ss_pred HHHHHHHHHHhccCCC--CCHHHHHHHhCCCCcccH
Confidence 9999999998877554 556666666665543 44
No 79
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.60 E-value=7e-15 Score=110.98 Aligned_cols=132 Identities=17% Similarity=0.217 Sum_probs=91.2
Q ss_pred ccccChHHHHHHHHHHhc--CCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhc
Q 021660 54 DVAAHRDIVDTIDRLTSE--NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAST 131 (309)
Q Consensus 54 ~~ig~~~~~~~l~~~~~~--~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (309)
+++|+...++.+.+.+.. ....+++|+||||||||++|+.+++.....+ ..++ +++............+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~--~~~v-~~~~~~~~~~~~~~~~~~a--- 75 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQ--GEFV-YRELTPDNAPQLNDFIALA--- 75 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTT--SCCE-EEECCTTTSSCHHHHHHHH---
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccC--CCEE-EECCCCCcchhhhcHHHHc---
Confidence 688999998888877653 2334599999999999999999988753322 3344 6665433222222222221
Q ss_pred cccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCc-------ccchhhhcce--eEEEecCC
Q 021660 132 QSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVN-------KIIPALQSRC--TRFRFAPL 200 (309)
Q Consensus 132 ~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~-------~l~~~l~~r~--~~i~~~~~ 200 (309)
...+|+|||++.++.+.+..|+.+++..+.+.++|++||... .+.+.+..|+ ..++++|+
T Consensus 76 ---------~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~~~~~L~~rl~~~~i~lPpL 144 (145)
T 3n70_A 76 ---------QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYYCFAMTQIACLPL 144 (145)
T ss_dssp ---------TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSCHHHHHHHSCCCHHHHHHHHHHEEECCCC
T ss_pred ---------CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcCHHHHHHcCCCCHHHHHHhcCCEEeCCCC
Confidence 356899999999999999999999987777888999988642 3445666665 45666654
No 80
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.58 E-value=1.7e-13 Score=118.58 Aligned_cols=185 Identities=18% Similarity=0.173 Sum_probs=123.2
Q ss_pred CccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCc------chHHHHHH
Q 021660 51 SLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR------GIDVVRQQ 124 (309)
Q Consensus 51 ~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 124 (309)
....++|++..++.+.+++..+ +.++|+||+|+|||++++.+++.. + ++.+++.... ....+...
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER-----P--GILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS-----S--EEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc-----C--cEEEEeecccccccCCCHHHHHHH
Confidence 4567999999999999998875 579999999999999999999885 2 3333332110 11111111
Q ss_pred HHHhhhc------------------cc---cc-------c---CCCCccEEEEEeCCCCCCH-------HHHHHHHHHHH
Q 021660 125 IQDFAST------------------QS---FS-------F---GVKASVKLVLLDEADAMTK-------DAQFALRRVIE 166 (309)
Q Consensus 125 ~~~~~~~------------------~~---~~-------~---~~~~~~~lliiDe~~~l~~-------~~~~~l~~~l~ 166 (309)
+...... .. .. + ....++.+|+|||+|.+.. +....|..+++
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~ 160 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD 160 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHH
Confidence 1111000 00 00 0 0001378999999999764 34455555555
Q ss_pred HhcCCceEEEEecCCccc---------chhhhcce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCH
Q 021660 167 KYTKNTRFALICNQVNKI---------IPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDM 236 (309)
Q Consensus 167 ~~~~~~~~i~~~~~~~~l---------~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~ 236 (309)
.. ....+|++++....+ ...+..|. ..+.+.|++.++..+++...+...+..++++.+..+++.++|+|
T Consensus 161 ~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P 239 (350)
T 2qen_A 161 SL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIP 239 (350)
T ss_dssp HC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCH
T ss_pred hc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCH
Confidence 43 366777777543211 11233344 68999999999999999998887888899999999999999999
Q ss_pred HHHHHHHHH
Q 021660 237 RKALNILQS 245 (309)
Q Consensus 237 r~~~~~l~~ 245 (309)
..+......
T Consensus 240 ~~l~~~~~~ 248 (350)
T 2qen_A 240 GWLVVFGVE 248 (350)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877665543
No 81
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.56 E-value=1.6e-13 Score=120.58 Aligned_cols=132 Identities=21% Similarity=0.291 Sum_probs=90.0
Q ss_pred ccEEEEEeCCCCCCHH------------HHHHHHHHHHHh----------cCCceEEEEe----cCCcccchhhhcce-e
Q 021660 141 SVKLVLLDEADAMTKD------------AQFALRRVIEKY----------TKNTRFALIC----NQVNKIIPALQSRC-T 193 (309)
Q Consensus 141 ~~~lliiDe~~~l~~~------------~~~~l~~~l~~~----------~~~~~~i~~~----~~~~~l~~~l~~r~-~ 193 (309)
+..++++||+|++... .+..|+++++.. ..+..||+++ ..+..+.+.|.+|+ .
T Consensus 250 ~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i 329 (444)
T 1g41_A 250 QNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPI 329 (444)
T ss_dssp HHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCE
T ss_pred cCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccce
Confidence 3568999999998632 467899999952 2344556555 13334568899999 5
Q ss_pred EEEecCCChHHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHHh--------cCCHHHHHHHHHHHHhhc--
Q 021660 194 RFRFAPLEPVHVTERLKH-----------VIEAEGL--DVTEGGLAALVRLC--------NGDMRKALNILQSTHMAS-- 250 (309)
Q Consensus 194 ~i~~~~~~~~~~~~~l~~-----------~~~~~~~--~~~~~~l~~i~~~~--------~g~~r~~~~~l~~~~~~~-- 250 (309)
++.|++++.+++..|+.. .+...++ .++++++..|++.+ ....|.+.+.++.+....
T Consensus 330 ~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~ 409 (444)
T 1g41_A 330 RVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISF 409 (444)
T ss_dssp EEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHh
Confidence 699999999999998831 2222343 58999999999863 466788777776655421
Q ss_pred -------C--CcCHHHHHhhhCCC-ChHHHHH
Q 021660 251 -------Q--QITEEAVYLCTGNP-LPKDIEQ 272 (309)
Q Consensus 251 -------~--~i~~~~v~~~~~~~-~~~~~~~ 272 (309)
. .||.+.|...++.. .+.++.+
T Consensus 410 ~~~~~~~~~~~i~~~~v~~~l~~~~~~~dl~~ 441 (444)
T 1g41_A 410 SASDMNGQTVNIDAAYVADALGEVVENEDLSR 441 (444)
T ss_dssp HGGGCTTCEEEECHHHHHHHHTTTTTCHHHHH
T ss_pred hccccCCCeEEEeHHHHHHhcCccccCCChhc
Confidence 1 38888888877644 3333443
No 82
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.54 E-value=1.7e-14 Score=108.50 Aligned_cols=128 Identities=13% Similarity=0.153 Sum_probs=87.0
Q ss_pred ccccChHHHHHHHHHHhc--CCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhc
Q 021660 54 DVAAHRDIVDTIDRLTSE--NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAST 131 (309)
Q Consensus 54 ~~ig~~~~~~~l~~~~~~--~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (309)
+++|++..++.+.+.+.. ....+++|+||||||||++|+.+++.. . .++.+++..... ......+...
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~-----~-~~~~~~~~~~~~-~~~~~~~~~a--- 74 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG-----T-PWVSPARVEYLI-DMPMELLQKA--- 74 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT-----S-CEECCSSTTHHH-HCHHHHHHHT---
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC-----C-CeEEechhhCCh-HhhhhHHHhC---
Confidence 688999888888777653 233459999999999999999998875 2 566666664211 1111211111
Q ss_pred cccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCCc-c----cchhhhcce--eEEEecCC
Q 021660 132 QSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-KNTRFALICNQVN-K----IIPALQSRC--TRFRFAPL 200 (309)
Q Consensus 132 ~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~-~~~~~i~~~~~~~-~----l~~~l~~r~--~~i~~~~~ 200 (309)
.+.+|+|||++.++.+.+..|+.++++.. .+.++|+++|... . +.+.+..|+ ..+.++|+
T Consensus 75 ---------~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~~~~~L~~rl~~~~i~lPpL 142 (143)
T 3co5_A 75 ---------EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSYAAGSDGISCEEKLAGLFSESVVRIPPL 142 (143)
T ss_dssp ---------TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEECTTTC--CHHHHHHHHSSSEEEEECCC
T ss_pred ---------CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCCCHHHHHhCccHHHHHHhcCcEEeCCCC
Confidence 35689999999999999999999999763 4677888886442 2 345566665 45666664
No 83
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.53 E-value=8.5e-15 Score=134.80 Aligned_cols=208 Identities=16% Similarity=0.153 Sum_probs=125.2
Q ss_pred ccccccChHHHHHHHHHHhcCCC-----------CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHH
Q 021660 52 LADVAAHRDIVDTIDRLTSENRL-----------PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDV 120 (309)
Q Consensus 52 ~~~~ig~~~~~~~l~~~~~~~~~-----------~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (309)
...++|++.+++.+...+.++.. .+++|+||||||||++|+.+++.+....+.... ..++....+ ..
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~-~~~~~~l~~-~~ 371 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGK-GSTAAGLTA-AV 371 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTT-CSTTTTSEE-EC
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCC-ccccccccc-ee
Confidence 45789999998888777766631 169999999999999999999887322111000 000010000 00
Q ss_pred HHHHHHHhhhccccccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHh-------------cCCceEEEEecCCc-----
Q 021660 121 VRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-------------TKNTRFALICNQVN----- 182 (309)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~-------------~~~~~~i~~~~~~~----- 182 (309)
.............. .-..+.+++++|||++.+.++.++.|+++|++. +..+.+|+++|...
T Consensus 372 ~~~~~~g~~~~~~G-~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~ 450 (595)
T 3f9v_A 372 VREKGTGEYYLEAG-ALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYIS 450 (595)
T ss_dssp SSGGGTSSCSEEEC-HHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCT
T ss_pred eeccccccccccCC-eeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCc
Confidence 00000000000000 000113579999999999999999999999952 23566888888764
Q ss_pred --------ccchhhhcce-eEEEecCCChHHHHHHHHHHHHHc-------------------------CCCCCHHHHHHH
Q 021660 183 --------KIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAE-------------------------GLDVTEGGLAAL 228 (309)
Q Consensus 183 --------~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~-------------------------~~~~~~~~l~~i 228 (309)
.+++++.+|| ..+.+.+++..+...++++.+... ...+++++.+.|
T Consensus 451 ~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l 530 (595)
T 3f9v_A 451 ERPVSDNINLPPTILSRFDLIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNLI 530 (595)
T ss_dssp TSCSCTTTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHH
T ss_pred ccCchhccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 7888999999 455555555544444444444321 125666666777
Q ss_pred HHH---------------hcCCHHHHHHHHHHHHhhc-----CCcCHHHHHhhh
Q 021660 229 VRL---------------CNGDMRKALNILQSTHMAS-----QQITEEAVYLCT 262 (309)
Q Consensus 229 ~~~---------------~~g~~r~~~~~l~~~~~~~-----~~i~~~~v~~~~ 262 (309)
.+. .++++|.+.++++.+...+ ..++.+++..++
T Consensus 531 ~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai 584 (595)
T 3f9v_A 531 TDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAI 584 (595)
T ss_dssp HHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHH
Confidence 766 3567777777775543322 457777776654
No 84
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.50 E-value=1.3e-12 Score=113.17 Aligned_cols=184 Identities=16% Similarity=0.163 Sum_probs=118.4
Q ss_pred CccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCC-----cchHHHHHHH
Q 021660 51 SLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD-----RGIDVVRQQI 125 (309)
Q Consensus 51 ~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 125 (309)
....++|++..++.+.. +.. +.++|+||+|+|||++++.+++.+. ..++.+++... .....+...+
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELN-----LPYIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHT-----CCEEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcC-----CCEEEEEchhhccccCCCHHHHHHHH
Confidence 45679999999999999 765 5799999999999999999999873 22334443321 1111111111
Q ss_pred HHhhh--------------cc------------------ccc-------cCCCC-ccEEEEEeCCCCCCH----HHHHHH
Q 021660 126 QDFAS--------------TQ------------------SFS-------FGVKA-SVKLVLLDEADAMTK----DAQFAL 161 (309)
Q Consensus 126 ~~~~~--------------~~------------------~~~-------~~~~~-~~~lliiDe~~~l~~----~~~~~l 161 (309)
..... .. ... +.... ++.+|+|||+|.+.. +....|
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l 161 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPAL 161 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHH
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHH
Confidence 11100 00 000 00001 377999999999754 234445
Q ss_pred HHHHHHhcCCceEEEEecCCcccc---------hhhhcce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 021660 162 RRVIEKYTKNTRFALICNQVNKII---------PALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRL 231 (309)
Q Consensus 162 ~~~l~~~~~~~~~i~~~~~~~~l~---------~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~ 231 (309)
..+.+.. ....+|++++....+. ..+..|. ..+.+.|++.++..+++...+...+...++. ..+++.
T Consensus 162 ~~~~~~~-~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~--~~i~~~ 238 (357)
T 2fna_A 162 AYAYDNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY--EVVYEK 238 (357)
T ss_dssp HHHHHHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH--HHHHHH
T ss_pred HHHHHcC-CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH--HHHHHH
Confidence 4455443 3667777776432111 1244454 7899999999999999998887667666554 889999
Q ss_pred hcCCHHHHHHHHHHH
Q 021660 232 CNGDMRKALNILQST 246 (309)
Q Consensus 232 ~~g~~r~~~~~l~~~ 246 (309)
++|+|..+...+..+
T Consensus 239 t~G~P~~l~~~~~~~ 253 (357)
T 2fna_A 239 IGGIPGWLTYFGFIY 253 (357)
T ss_dssp HCSCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHH
Confidence 999999877666543
No 85
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.48 E-value=2.6e-13 Score=129.21 Aligned_cols=185 Identities=20% Similarity=0.242 Sum_probs=125.4
Q ss_pred hcCCCCccccccChHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEec
Q 021660 46 KYRPQSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (309)
Q Consensus 46 ~~~p~~~~~~ig~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 112 (309)
.+.+..+++++|.+..++.+.+++.. ....+++|+||||||||++++.++..+ ...++.+++
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l-----~~~~i~v~~ 271 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-----GAFFFLING 271 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT-----TCEEEEEEH
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc-----CCcEEEEEc
Confidence 45567899999999999988888753 223459999999999999999999987 556677765
Q ss_pred CCCc--chHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH-----------HHHHHHHHHHHHhc--CCceEEEE
Q 021660 113 SDDR--GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKYT--KNTRFALI 177 (309)
Q Consensus 113 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~-----------~~~~~l~~~l~~~~--~~~~~i~~ 177 (309)
.... ........+......... ..+.++++||++.+.. .....|+.+++... ....+|++
T Consensus 272 ~~l~~~~~g~~~~~l~~vf~~a~~-----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~a 346 (806)
T 1ypw_A 272 PEIMSKLAGESESNLRKAFEEAEK-----NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAA 346 (806)
T ss_dssp HHHSSSSTTHHHHHHHHHHHHHHH-----HCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEE
T ss_pred hHhhhhhhhhHHHHHHHHHHHHHh-----cCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecc
Confidence 3211 111122222222221111 0467999999987753 23466777777543 35567778
Q ss_pred ecCCcccchhhhc--ce-eEEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHH
Q 021660 178 CNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALN 241 (309)
Q Consensus 178 ~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~ 241 (309)
+|....+.+.+.+ || ..+.+..|+.++..++++.++....+. .+..+..++..+.|..+..+.
T Consensus 347 tn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~g~dl~ 412 (806)
T 1ypw_A 347 TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLA 412 (806)
T ss_dssp CSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCC-TTCCTHHHHHSCSSCCHHHHH
T ss_pred cCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCc-ccchhHHHHHhhcCcchHHHH
Confidence 8888888888877 77 778999999999999998776544322 233456777777776544433
No 86
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.45 E-value=2e-12 Score=112.43 Aligned_cols=194 Identities=17% Similarity=0.185 Sum_probs=130.4
Q ss_pred cccccChHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhh
Q 021660 53 ADVAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAS 130 (309)
Q Consensus 53 ~~~ig~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (309)
.+++|....+..+...+..- ....++++|++|+||+.+++.+.......+ .++.++|..... ..+.+.+.....
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~---~fv~vnc~~~~~-~~~~~~lfg~~~ 204 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRKG---AFVDLNCASIPQ-ELAESELFGHEK 204 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCCS---CEEEEESSSSCT-TTHHHHHHEECS
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhccccC---CcEEEEcccCCh-HHHHHHhcCccc
Confidence 45788877777665554321 223499999999999999999987763322 288899986432 222332221111
Q ss_pred cccc-c------cCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCceEEEEecCCc-------ccc
Q 021660 131 TQSF-S------FGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQVN-------KII 185 (309)
Q Consensus 131 ~~~~-~------~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~~i~~~~~~~-------~l~ 185 (309)
.... . .-..++++.|+|||++.++.+.+..|+.++++.. .++++|.+|+... ...
T Consensus 205 g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr 284 (368)
T 3dzd_A 205 GAFTGALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFR 284 (368)
T ss_dssp CSSSSCCCCEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSC
T ss_pred cccCCcccccCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCcc
Confidence 0000 0 0001246789999999999999999999999632 2567888887432 334
Q ss_pred hhhhcce--eEEEecCCCh--HHHHHHHHHHHH----HcC---CCCCHHHHHHHHHHh-cCCHHHHHHHHHHHHhhc
Q 021660 186 PALQSRC--TRFRFAPLEP--VHVTERLKHVIE----AEG---LDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS 250 (309)
Q Consensus 186 ~~l~~r~--~~i~~~~~~~--~~~~~~l~~~~~----~~~---~~~~~~~l~~i~~~~-~g~~r~~~~~l~~~~~~~ 250 (309)
+.+..|+ ..++++|+.. +++..++...++ +.+ ..+++++++.+..+. +||+|.+.+.++.++..+
T Consensus 285 ~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 285 EDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp HHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC
Confidence 5677776 4567777765 677666555544 334 358999999999976 999999999999887654
No 87
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.43 E-value=7.5e-12 Score=109.62 Aligned_cols=206 Identities=18% Similarity=0.181 Sum_probs=136.6
Q ss_pred ccccccChHHHHHHHHHHhcCC--CCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhh
Q 021660 52 LADVAAHRDIVDTIDRLTSENR--LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFA 129 (309)
Q Consensus 52 ~~~~ig~~~~~~~l~~~~~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (309)
+..++|....++.+.+.+..-. ...++|+|++|+||+++++.+..... .....++.++|.... ...+.+.+....
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~--r~~~~fv~v~~~~~~-~~~~~~elfg~~ 212 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSD--RSKEPFVALNVASIP-RDIFEAELFGYE 212 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHST--TTTSCEEEEETTTSC-HHHHHHHHHCBC
T ss_pred chhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcC--CCCCCeEEEecCCCC-HHHHHHHhcCCC
Confidence 4567888777777766655322 22389999999999999999877642 224568888888643 222333222211
Q ss_pred hcccc-------ccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHh-----------cCCceEEEEecCC-------ccc
Q 021660 130 STQSF-------SFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-----------TKNTRFALICNQV-------NKI 184 (309)
Q Consensus 130 ~~~~~-------~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~-----------~~~~~~i~~~~~~-------~~l 184 (309)
..... ..-..+++++|+|||++.++.+.+..|+.++++. +.++++|++||.. ...
T Consensus 213 ~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~f 292 (387)
T 1ny5_A 213 KGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKF 292 (387)
T ss_dssp TTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSS
T ss_pred CCCCCCcccccCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCc
Confidence 10000 0001135679999999999999999999999963 2356788888753 233
Q ss_pred chhhhcce--eEEEecCCCh--HHHHHHHHHHHH----HcCC---CCCHHHHHHHHHHh-cCCHHHHHHHHHHHHhhc--
Q 021660 185 IPALQSRC--TRFRFAPLEP--VHVTERLKHVIE----AEGL---DVTEGGLAALVRLC-NGDMRKALNILQSTHMAS-- 250 (309)
Q Consensus 185 ~~~l~~r~--~~i~~~~~~~--~~~~~~l~~~~~----~~~~---~~~~~~l~~i~~~~-~g~~r~~~~~l~~~~~~~-- 250 (309)
.+.+..|. ..++++|+.. +++..++...++ +.+. .+++++++.+..+. +||+|.+.+.++.++..+
T Consensus 293 r~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~~~ 372 (387)
T 1ny5_A 293 REDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEG 372 (387)
T ss_dssp CHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHCCS
T ss_pred cHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhCCC
Confidence 45566665 4566666653 566655554443 3443 37899999999775 899999999999888755
Q ss_pred CCcCHHHHHh
Q 021660 251 QQITEEAVYL 260 (309)
Q Consensus 251 ~~i~~~~v~~ 260 (309)
..|+.+++..
T Consensus 373 ~~i~~~~l~~ 382 (387)
T 1ny5_A 373 KFIDRGELSC 382 (387)
T ss_dssp SEECHHHHHH
T ss_pred CcCcHHHCcH
Confidence 3577776643
No 88
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.40 E-value=4.5e-13 Score=104.83 Aligned_cols=131 Identities=13% Similarity=0.161 Sum_probs=82.4
Q ss_pred hhcCCCCcccccc----ChHHHHHHHHHHhcCC---CCeEEEECCCCCcHHHHHHHHHHHHc-cCcccccEEEEecCCCc
Q 021660 45 EKYRPQSLADVAA----HRDIVDTIDRLTSENR---LPHLLLYGPPGTGKTSTILAVARKLY-GAQYHNMILELNASDDR 116 (309)
Q Consensus 45 ~~~~p~~~~~~ig----~~~~~~~l~~~~~~~~---~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~ 116 (309)
++|++.+|+++++ +..+++.+.+++.+.. ...++|+||+|+||||+++.++..+. ..+....++ +.
T Consensus 2 ~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~--~~---- 75 (180)
T 3ec2_A 2 KRYWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF--DT---- 75 (180)
T ss_dssp CSCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE--EH----
T ss_pred chhhhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE--EH----
Confidence 5788999999986 4566667777765432 34599999999999999999999984 333333332 21
Q ss_pred chHHHHHHHHHhhhcccc--ccCCCCccEEEEEeCCC--CCCHHHHHHHHHHHHHhc-CCceEEEEecCCcc
Q 021660 117 GIDVVRQQIQDFASTQSF--SFGVKASVKLVLLDEAD--AMTKDAQFALRRVIEKYT-KNTRFALICNQVNK 183 (309)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~lliiDe~~--~l~~~~~~~l~~~l~~~~-~~~~~i~~~~~~~~ 183 (309)
..+...+......... ......++.+|+|||++ .+.+.....+..+++... ....+|++||....
T Consensus 76 --~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 76 --KDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp --HHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred --HHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 1111111111100000 00001146799999998 466777788888887653 46678888876643
No 89
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.38 E-value=5e-15 Score=140.94 Aligned_cols=156 Identities=19% Similarity=0.241 Sum_probs=107.1
Q ss_pred cCCCCccccccChHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecC
Q 021660 47 YRPQSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 113 (309)
Q Consensus 47 ~~p~~~~~~ig~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 113 (309)
.....+++++|.+.+++.+..++.. ....+++|+||||||||+++++++..+ ...++.+++.
T Consensus 471 ~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~-----~~~~i~v~~~ 545 (806)
T 1ypw_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISIKGP 545 (806)
T ss_dssp CCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH-----TCCCCCCCCS
T ss_pred CccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh-----CCCEEEEech
Confidence 3455788999999999999888752 123349999999999999999999998 3344444443
Q ss_pred CC------cchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCCCCH--------------HHHHHHHHHHHHh--cCC
Q 021660 114 DD------RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK--------------DAQFALRRVIEKY--TKN 171 (309)
Q Consensus 114 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~l~~--------------~~~~~l~~~l~~~--~~~ 171 (309)
.. .....+...+...... .+.+++|||+|.+.. ...+.|+..++.. ...
T Consensus 546 ~l~~~~~g~~~~~i~~~f~~a~~~---------~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~ 616 (806)
T 1ypw_A 546 ELLTMWFGESEANVREIFDKARQA---------APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 616 (806)
T ss_dssp SSTTCCTTTSSHHHHHHHHHHHHH---------CSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------C
T ss_pred HhhhhhcCccHHHHHHHHHHHHhc---------CCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCC
Confidence 31 1112233333332221 357999999988642 1124444444432 235
Q ss_pred ceEEEEecCCcccchhhhc--ce-eEEEecCCChHHHHHHHHHHHHHc
Q 021660 172 TRFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAE 216 (309)
Q Consensus 172 ~~~i~~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~ 216 (309)
..+|++||.++.+++++.+ || ..+.|+.|+.++...+++.+++..
T Consensus 617 v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~ 664 (806)
T 1ypw_A 617 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS 664 (806)
T ss_dssp CBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC
T ss_pred eEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccC
Confidence 6777888999999999998 88 689999999999999998877543
No 90
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=99.20 E-value=1.1e-10 Score=91.10 Aligned_cols=136 Identities=17% Similarity=0.212 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHhcCCCC-eEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhccccccC
Q 021660 59 RDIVDTIDRLTSENRLP-HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFG 137 (309)
Q Consensus 59 ~~~~~~l~~~~~~~~~~-~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (309)
...+..++.++.+.... +++|+||||+|||+++.++++.+.+ .++.+..... .. + .. . +.
T Consensus 42 ~~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g-----~i~~fans~s-~f--~-------l~--~--l~ 102 (212)
T 1tue_A 42 ITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQG-----AVISFVNSTS-HF--W-------LE--P--LT 102 (212)
T ss_dssp HHHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTC-----EECCCCCSSS-CG--G-------GG--G--GT
T ss_pred HHHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCC-----CeeeEEeccc-hh--h-------hc--c--cC
Confidence 34566777777763222 4999999999999999999999832 1221111110 00 0 00 0 11
Q ss_pred CCCccEEEEEeCCCCCCHHH-HHHHHHHHHHhc-------------CCceEEEEecCC---cccchhhhcceeEEEecCC
Q 021660 138 VKASVKLVLLDEADAMTKDA-QFALRRVIEKYT-------------KNTRFALICNQV---NKIIPALQSRCTRFRFAPL 200 (309)
Q Consensus 138 ~~~~~~lliiDe~~~l~~~~-~~~l~~~l~~~~-------------~~~~~i~~~~~~---~~l~~~l~~r~~~i~~~~~ 200 (309)
+.++++|||++.-.... ...+..+++..+ ...++|+|||.. ....+.+.+|+..+.|+.+
T Consensus 103 ---~~kIiiLDEad~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~~f~F~~~ 179 (212)
T 1tue_A 103 ---DTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRITVFEFPNA 179 (212)
T ss_dssp ---TCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCEEEECCSC
T ss_pred ---CCCEEEEECCCchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhEEEEEcCCC
Confidence 35699999998432222 234556666431 246889999863 3445789999988887633
Q ss_pred -------------ChHHHHHHHHHHHHHc
Q 021660 201 -------------EPVHVTERLKHVIEAE 216 (309)
Q Consensus 201 -------------~~~~~~~~l~~~~~~~ 216 (309)
+....+.++++...+.
T Consensus 180 ~p~~~~g~p~~~~~~~~wk~ff~~~~~~l 208 (212)
T 1tue_A 180 FPFDKNGNPVYEINDKNWKCFFERTWSRL 208 (212)
T ss_dssp CCBCTTSCBSCCCCHHHHHHHHHHHTGGG
T ss_pred CCCCCCCCeeEEeCcchHHHHHHHHHHhc
Confidence 3455566665554443
No 91
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.19 E-value=3.8e-11 Score=90.59 Aligned_cols=99 Identities=14% Similarity=0.195 Sum_probs=67.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCCC
Q 021660 73 RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADA 152 (309)
Q Consensus 73 ~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~~ 152 (309)
....++|+||+|+|||++++.++..+...+. ..+.++....... .+ .. ++.+|+|||++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~--~~~~~~~~~~~~~--------~~--------~~--~~~lLilDE~~~ 94 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGK--NAAYIDAASMPLT--------DA--------AF--EAEYLAVDQVEK 94 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTC--CEEEEETTTSCCC--------GG--------GG--GCSEEEEESTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCC--cEEEEcHHHhhHH--------HH--------Hh--CCCEEEEeCccc
Confidence 3455999999999999999999999865332 3444454432211 11 11 467999999999
Q ss_pred CCHHHHHHHHHHHHHhcC-Cce-EEEEecCCc----ccchhhhcce
Q 021660 153 MTKDAQFALRRVIEKYTK-NTR-FALICNQVN----KIIPALQSRC 192 (309)
Q Consensus 153 l~~~~~~~l~~~l~~~~~-~~~-~i~~~~~~~----~l~~~l~~r~ 192 (309)
+....+..|+.+++.... ... +|++++... .. +.+.+|+
T Consensus 95 ~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~-~~L~SRl 139 (149)
T 2kjq_A 95 LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIR-EDLRTRM 139 (149)
T ss_dssp CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCC-HHHHHHG
T ss_pred cChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHcccc-HHHHHHH
Confidence 887778888888886432 233 777776432 23 7888886
No 92
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=99.18 E-value=5.7e-10 Score=91.26 Aligned_cols=138 Identities=16% Similarity=0.200 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhcC-CCC-eEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhccccccC
Q 021660 60 DIVDTIDRLTSEN-RLP-HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFG 137 (309)
Q Consensus 60 ~~~~~l~~~~~~~-~~~-~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (309)
.....+..|+.+. ... .++|+||||||||+++.++++.+.. +..++.... ...+.
T Consensus 88 ~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l------~G~vn~~~~-----------------~f~l~ 144 (267)
T 1u0j_A 88 YAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPF------YGCVNWTNE-----------------NFPFN 144 (267)
T ss_dssp HHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSC------EEECCTTCS-----------------SCTTG
T ss_pred HHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhcc------cceeecccc-----------------ccccc
Confidence 4455677888775 323 4999999999999999999997511 112222110 00122
Q ss_pred CCCccEEEEEeCCCCCCHHHHHHHHHHHH--------Hhc-----CCceEEEEecCC-----------cccchhhhccee
Q 021660 138 VKASVKLVLLDEADAMTKDAQFALRRVIE--------KYT-----KNTRFALICNQV-----------NKIIPALQSRCT 193 (309)
Q Consensus 138 ~~~~~~lliiDe~~~l~~~~~~~l~~~l~--------~~~-----~~~~~i~~~~~~-----------~~l~~~l~~r~~ 193 (309)
....+.+++.||..... +..+.+..+++ ... ..+++|++||.. ....+.|.+|+.
T Consensus 145 ~~~~k~i~l~Ee~~~~~-d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~~ 223 (267)
T 1u0j_A 145 DCVDKMVIWWEEGKMTA-KVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMF 223 (267)
T ss_dssp GGSSCSEEEECSCCEET-TTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHTTEE
T ss_pred cccccEEEEeccccchh-HHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhhhEE
Confidence 21246677777776544 44566667776 222 567889999862 244578999999
Q ss_pred EEEec--------CCChHHHHHHHHHHHHHcCCCCCH
Q 021660 194 RFRFA--------PLEPVHVTERLKHVIEAEGLDVTE 222 (309)
Q Consensus 194 ~i~~~--------~~~~~~~~~~l~~~~~~~~~~~~~ 222 (309)
.+.|. +++.++++.++. .++.+..++++
T Consensus 224 ~f~F~~~~p~~~~~lt~~~~~~f~~-w~~~~~~~~~~ 259 (267)
T 1u0j_A 224 KFELTRRLDHDFGKVTKQEVKDFFR-WAKDHVVEVEH 259 (267)
T ss_dssp EEECCSCCCTTSCCCCHHHHHHHHH-HHHHTCCCCCC
T ss_pred EEECCCcCCcccCCCCHHHHHHHHH-HHHHcCCCCcc
Confidence 99998 899999999997 44666665543
No 93
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.18 E-value=2.6e-10 Score=99.86 Aligned_cols=166 Identities=11% Similarity=0.076 Sum_probs=104.2
Q ss_pred cccChHHHHHHHHHHhcCC-----CCeEEEECCCCCcHHHHHHHH-HHHHccCcccccEEEEecCCCcchHHHHHHHHHh
Q 021660 55 VAAHRDIVDTIDRLTSENR-----LPHLLLYGPPGTGKTSTILAV-ARKLYGAQYHNMILELNASDDRGIDVVRQQIQDF 128 (309)
Q Consensus 55 ~ig~~~~~~~l~~~~~~~~-----~~~~ll~G~~G~GKT~l~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (309)
++|++.++..+.-.+.++. .-|+||.|+||+ ||++++.+ ++.+. ...+....... . ..+...+...
T Consensus 215 I~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~p----R~~ft~g~~ss--~-~gLt~s~r~~ 286 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAP----RGVYVDLRRTE--L-TDLTAVLKED 286 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCS----SEEEEEGGGCC--H-HHHSEEEEES
T ss_pred cCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhCC----CeEEecCCCCC--c-cCceEEEEcC
Confidence 8899999888888877763 126999999999 99999999 55531 11121111110 0 0000000000
Q ss_pred hhccccccC----CCCccEEEEEeCCCCCCHHHHHHHHHHHHH---------hcCCceEEEEecCCc-----------cc
Q 021660 129 ASTQSFSFG----VKASVKLVLLDEADAMTKDAQFALRRVIEK---------YTKNTRFALICNQVN-----------KI 184 (309)
Q Consensus 129 ~~~~~~~~~----~~~~~~lliiDe~~~l~~~~~~~l~~~l~~---------~~~~~~~i~~~~~~~-----------~l 184 (309)
.. ..+. ..++.+++++||++.+++..+..|++.|++ .+..+.+|.++|... .+
T Consensus 287 --tG-~~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~L 363 (506)
T 3f8t_A 287 --RG-WALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDL 363 (506)
T ss_dssp --SS-EEEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCS
T ss_pred --CC-cccCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCC
Confidence 00 0000 012478999999999999999999999996 356778888888754 77
Q ss_pred chhhhcce-eEEEe-c-------------CCChHHHHHHHHHHHH--HcCCCCCHHHHHHHHHHh
Q 021660 185 IPALQSRC-TRFRF-A-------------PLEPVHVTERLKHVIE--AEGLDVTEGGLAALVRLC 232 (309)
Q Consensus 185 ~~~l~~r~-~~i~~-~-------------~~~~~~~~~~l~~~~~--~~~~~~~~~~l~~i~~~~ 232 (309)
++++.+|| ..+.+ . .++.+++++++. +++ .....+++++.++|++.+
T Consensus 364 p~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~-~ar~~~~~p~ls~ea~~yI~~~y 427 (506)
T 3f8t_A 364 DQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLL-YAIREHPAPELTEEARKRLEHWY 427 (506)
T ss_dssp CHHHHTTCSEEEETTC--------------CCHHHHHHHHH-HHHHHCSCCEECHHHHHHHHHHH
T ss_pred ChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHH-HHHhcCCCceeCHHHHHHHHHHH
Confidence 88999999 33322 2 233444555443 333 225678888888888764
No 94
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.15 E-value=1.4e-10 Score=92.20 Aligned_cols=131 Identities=18% Similarity=0.218 Sum_probs=74.2
Q ss_pred hhhhcCCCCccccccCh----HHHHHHHHHHhcCC----CCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCC
Q 021660 43 WVEKYRPQSLADVAAHR----DIVDTIDRLTSENR----LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (309)
Q Consensus 43 ~~~~~~p~~~~~~ig~~----~~~~~l~~~~~~~~----~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 114 (309)
+..+|++.+|+++++.. .+++.+..++.... ..+++|+||+|+|||++++.+++.+...+... ..+++..
T Consensus 15 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~--~~~~~~~ 92 (202)
T 2w58_A 15 MPREILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSS--LIVYVPE 92 (202)
T ss_dssp SCGGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCE--EEEEHHH
T ss_pred CCHHHHcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeE--EEEEhHH
Confidence 44567788899998754 35566677776542 15699999999999999999999986544333 3233221
Q ss_pred CcchHHHHHHHHHhhhcccc--ccCCCCccEEEEEeCCCCCCHH--HHHHHH-HHHHHh-cCCceEEEEecCC
Q 021660 115 DRGIDVVRQQIQDFASTQSF--SFGVKASVKLVLLDEADAMTKD--AQFALR-RVIEKY-TKNTRFALICNQV 181 (309)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~lliiDe~~~l~~~--~~~~l~-~~l~~~-~~~~~~i~~~~~~ 181 (309)
+...+......... .+.......+|+|||++..... .+..++ .+++.. .....+|++||..
T Consensus 93 ------~~~~~~~~~~~~~~~~~~~~~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 93 ------LFRELKHSLQDQTMNEKLDYIKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp ------HHHHHHHC---CCCHHHHHHHHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred ------HHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 11111100000000 0000002459999999765432 234333 466643 4466788888754
No 95
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.15 E-value=7.9e-11 Score=105.62 Aligned_cols=140 Identities=14% Similarity=0.176 Sum_probs=80.1
Q ss_pred CCCCCcChhhhcCCCCccccc-cChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCC
Q 021660 36 PDIKASPWVEKYRPQSLADVA-AHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (309)
Q Consensus 36 ~~~~~~~~~~~~~p~~~~~~i-g~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 114 (309)
...++.||.++|+|.+++++- +|.+++..+..++..+.. +++|.|+||||||+++..++..+...+. ..+..+ +..
T Consensus 7 ~~~~~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~-~~li~G~aGTGKT~ll~~~~~~l~~~~~-~~il~~-a~T 83 (459)
T 3upu_A 7 HHHHSSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKKH-HVTINGPAGTGATTLTKFIIEALISTGE-TGIILA-APT 83 (459)
T ss_dssp --------------CCSSCCCHHHHHHHHHHHHHHHSSSC-EEEEECCTTSCHHHHHHHHHHHHHHTTC-CCEEEE-ESS
T ss_pred CCCccCCCccccCCCccccCCHHHHHHHHHHHHHHhcCCC-EEEEEeCCCCCHHHHHHHHHHHHHhcCC-ceEEEe-cCc
Confidence 355778999999999999987 688888888888877653 7999999999999999999999865544 122222 222
Q ss_pred CcchHHHHHHH-------HHhhhcccc-----------ccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEE
Q 021660 115 DRGIDVVRQQI-------QDFASTQSF-----------SFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFAL 176 (309)
Q Consensus 115 ~~~~~~~~~~~-------~~~~~~~~~-----------~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~ 176 (309)
......+.+.+ ..+...... .........+|+|||++.+.......|...+. ....+++
T Consensus 84 ~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~---~~~~~~~ 160 (459)
T 3upu_A 84 HAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP---PWCTIIG 160 (459)
T ss_dssp HHHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC---TTCEEEE
T ss_pred HHHHHHHHhhhccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhcc---CCCEEEE
Confidence 22222222221 111111000 00111246799999999998777666666553 4667777
Q ss_pred EecCC
Q 021660 177 ICNQV 181 (309)
Q Consensus 177 ~~~~~ 181 (309)
+++..
T Consensus 161 vGD~~ 165 (459)
T 3upu_A 161 IGDNK 165 (459)
T ss_dssp EECTT
T ss_pred ECCHH
Confidence 77543
No 96
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.11 E-value=2.1e-09 Score=112.32 Aligned_cols=175 Identities=15% Similarity=0.199 Sum_probs=114.2
Q ss_pred CCCCCcChhhhcCCC-------Cccc-cccChHHHH---HHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCccc
Q 021660 36 PDIKASPWVEKYRPQ-------SLAD-VAAHRDIVD---TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYH 104 (309)
Q Consensus 36 ~~~~~~~~~~~~~p~-------~~~~-~ig~~~~~~---~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~ 104 (309)
....+.+|.+...+. .+.+ +|-..+..+ .+..++..+ .+++|+||||||||++|+.++... ..
T Consensus 1220 ~~~~w~~W~~~v~~~~~~~~~~~~~~iiVpT~DT~R~~~ll~~~l~~~--~~vLL~GPpGtGKT~la~~~l~~~----~~ 1293 (2695)
T 4akg_A 1220 DKLSFSSFCSEIPSVSLEAHEVMRPDIVIPTIDTIKHEKIFYDLLNSK--RGIILCGPPGSGKTMIMNNALRNS----SL 1293 (2695)
T ss_dssp SSCCCBCCCCCCCCCCCCSGGGSCSSCCCCCHHHHHHHHHHHHHHHHT--CEEEEECSTTSSHHHHHHHHHHSC----SS
T ss_pred CCCceeechhcCCCcccCccccCccceeEeccchHHHHHHHHHHHHCC--CeEEEECCCCCCHHHHHHHHHhcC----CC
Confidence 345667787764322 1222 444444443 445556655 459999999999999997766553 24
Q ss_pred ccEEEEecCCCcchHHHHHHHHHhhhccc----cccCC--CCccEEEEEeCCCCCCH------HHHHHHHHHHHHhc---
Q 021660 105 NMILELNASDDRGIDVVRQQIQDFASTQS----FSFGV--KASVKLVLLDEADAMTK------DAQFALRRVIEKYT--- 169 (309)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~lliiDe~~~l~~------~~~~~l~~~l~~~~--- 169 (309)
..+..++.+.......+...+........ ..+++ ...+.|++|||++.... ...+.|..+++...
T Consensus 1294 ~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd 1373 (2695)
T 4akg_A 1294 YDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWK 1373 (2695)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEEC
T ss_pred CceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEE
Confidence 55666777666666666666665432111 00111 22467999999876432 35677777777311
Q ss_pred ---------CCceEEEEecCCc-----ccchhhhcceeEEEecCCChHHHHHHHHHHHHHc
Q 021660 170 ---------KNTRFALICNQVN-----KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216 (309)
Q Consensus 170 ---------~~~~~i~~~~~~~-----~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~ 216 (309)
.+..+|.++|.+. .+.+++.+||.++.++.|+.+++..|+..++...
T Consensus 1374 ~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1374 TPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp TTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCCCTTTHHHHHHHHHHHHH
T ss_pred cCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 2356777788773 6899999999999999999999999998887643
No 97
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=99.09 E-value=1.5e-10 Score=98.13 Aligned_cols=130 Identities=17% Similarity=0.217 Sum_probs=72.9
Q ss_pred hhhcCCCCccccccCh----HHHHHHHHHHhcCC---CCeEEEECCCCCcHHHHHHHHHHHHc-cCcccccEEEEecCCC
Q 021660 44 VEKYRPQSLADVAAHR----DIVDTIDRLTSENR---LPHLLLYGPPGTGKTSTILAVARKLY-GAQYHNMILELNASDD 115 (309)
Q Consensus 44 ~~~~~p~~~~~~ig~~----~~~~~l~~~~~~~~---~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~ 115 (309)
...+++.+|+++++.. .++..+..++.... ..+++|+||||+|||+++.++++.+. ..+..+.++ +..
T Consensus 115 ~~~~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~--~~~-- 190 (308)
T 2qgz_A 115 PKSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLL--HFP-- 190 (308)
T ss_dssp CGGGGSCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEE--EHH--
T ss_pred CHHHHhCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEE--EHH--
Confidence 3456678899998633 35556667777532 35699999999999999999999986 554433333 221
Q ss_pred cchHHHHHHHHHhhhcc--ccccCCCCccEEEEEeCCCCCCH--HHHHHH-HHHHHHh-cCCceEEEEecCC
Q 021660 116 RGIDVVRQQIQDFASTQ--SFSFGVKASVKLVLLDEADAMTK--DAQFAL-RRVIEKY-TKNTRFALICNQV 181 (309)
Q Consensus 116 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lliiDe~~~l~~--~~~~~l-~~~l~~~-~~~~~~i~~~~~~ 181 (309)
.+...+....... ...+.......+|+|||++.... ..+..+ ..+++.. .....+|++||..
T Consensus 191 ----~l~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~ 258 (308)
T 2qgz_A 191 ----SFAIDVKNAISNGSVKEEIDAVKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYS 258 (308)
T ss_dssp ----HHHHHHHCCCC----CCTTHHHHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSC
T ss_pred ----HHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCC
Confidence 1111111100000 00000001356999999965432 223333 3466643 3456788888744
No 98
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.08 E-value=1.4e-09 Score=100.77 Aligned_cols=185 Identities=13% Similarity=0.111 Sum_probs=109.4
Q ss_pred CCCccccccChHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHHc--cCcc--cccEEEEecCCCcchHHHH
Q 021660 49 PQSLADVAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLY--GAQY--HNMILELNASDDRGIDVVR 122 (309)
Q Consensus 49 p~~~~~~ig~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~ 122 (309)
|.....++|++..++.+..++... ....++|+|++|+|||++|..+++... ...+ ...++.+..... ..+.
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~---~~~~ 196 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDK---SGLL 196 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCH---HHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCch---HHHH
Confidence 556678999999999999998743 233499999999999999999975421 1122 234444443321 1111
Q ss_pred HHHHHhhhccc-------cc--------------cCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCC
Q 021660 123 QQIQDFASTQS-------FS--------------FGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQV 181 (309)
Q Consensus 123 ~~~~~~~~~~~-------~~--------------~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~ 181 (309)
..+........ .. +....++.+|||||++.. . .++..++.+.+|+||+..
T Consensus 197 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~-------~l~~l~~~~~ilvTsR~~ 267 (591)
T 1z6t_A 197 MKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--W-------VLKAFDSQCQILLTTRDK 267 (591)
T ss_dssp HHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--H-------HHHTTCSSCEEEEEESCG
T ss_pred HHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--H-------HHHHhcCCCeEEEECCCc
Confidence 11211111000 00 001114679999999752 1 233346677888877654
Q ss_pred cccchhhhcceeEEE-ecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 021660 182 NKIIPALQSRCTRFR-FAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH 247 (309)
Q Consensus 182 ~~l~~~l~~r~~~i~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~ 247 (309)
... .........+. ..+++.++..+++...+... ..-.++....|++.++|.|-.+.-....+.
T Consensus 268 ~~~-~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~-~~~~~~~~~~i~~~~~G~PLal~~~a~~l~ 332 (591)
T 1z6t_A 268 SVT-DSVMGPKYVVPVESSLGKEKGLEILSLFVNMK-KADLPEQAHSIIKECKGSPLVVSLIGALLR 332 (591)
T ss_dssp GGG-TTCCSCEEEEECCSSCCHHHHHHHHHHHHTSC-GGGSCTHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHH-HhcCCCceEeecCCCCCHHHHHHHHHHHhCCC-cccccHHHHHHHHHhCCCcHHHHHHHHHHh
Confidence 322 11111222222 25899999999998876421 112256789999999999977766555443
No 99
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.96 E-value=5.5e-08 Score=101.89 Aligned_cols=169 Identities=16% Similarity=0.207 Sum_probs=117.4
Q ss_pred hHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhccccccCC
Q 021660 59 RDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGV 138 (309)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (309)
+.....+..++..+. ..++.||+|||||++++.+|+.+ +..++.++|........+...+..+..
T Consensus 632 dr~~~tl~~Al~~~~--~~~l~GpaGtGKTe~vk~LA~~l-----g~~~v~~nc~e~ld~~~lg~~~~g~~~-------- 696 (2695)
T 4akg_A 632 LIGFATLTDSLHQKY--GGCFFGPAGTGKTETVKAFGQNL-----GRVVVVFNCDDSFDYQVLSRLLVGITQ-------- 696 (2695)
T ss_dssp HHHHHHHHHHHHTTC--EEEEECCTTSCHHHHHHHHHHTT-----TCCCEEEETTSSCCHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHhCC--CCcccCCCCCCcHHHHHHHHHHh-----CCcEEEEECCCCCChhHhhHHHHHHHh--------
Confidence 345556666666653 38899999999999999999998 778888999987777666555555443
Q ss_pred CCccEEEEEeCCCCCCHHHHHHHHHHHH-------Hh-------------cCCceEEEEecC----CcccchhhhcceeE
Q 021660 139 KASVKLVLLDEADAMTKDAQFALRRVIE-------KY-------------TKNTRFALICNQ----VNKIIPALQSRCTR 194 (309)
Q Consensus 139 ~~~~~lliiDe~~~l~~~~~~~l~~~l~-------~~-------------~~~~~~i~~~~~----~~~l~~~l~~r~~~ 194 (309)
.+..+++||++++..+....+...+. +. .+.+.+++|.|. ...+++++++||..
T Consensus 697 --~Gaw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~Fr~ 774 (2695)
T 4akg_A 697 --IGAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSFRE 774 (2695)
T ss_dssp --HTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTEEE
T ss_pred --cCCEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhheEE
Confidence 35689999999999887766633332 21 234456666673 34788999999999
Q ss_pred EEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-------------cCCHHHHHHHHHHHH
Q 021660 195 FRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLC-------------NGDMRKALNILQSTH 247 (309)
Q Consensus 195 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~-------------~g~~r~~~~~l~~~~ 247 (309)
+.+..|+.+.+.+++.. ..|..........++... +..+|.+...|..+.
T Consensus 775 v~m~~Pd~~~i~ei~l~---s~Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag 837 (2695)
T 4akg_A 775 FSMKSPQSGTIAEMILQ---IMGFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCS 837 (2695)
T ss_dssp EECCCCCHHHHHHHHHH---HHHCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHH
T ss_pred EEeeCCCHHHHHHHHHH---hcCCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHH
Confidence 99999998888777533 235544444444444321 235777777665543
No 100
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.94 E-value=1.4e-08 Score=93.13 Aligned_cols=177 Identities=17% Similarity=0.135 Sum_probs=102.6
Q ss_pred ccChHHHHHHHHHHhcC---CCCeEEEECCCCCcHHHHHHHHHH---HHccCcccccEEEEecCCCc--chHH-HHHHHH
Q 021660 56 AAHRDIVDTIDRLTSEN---RLPHLLLYGPPGTGKTSTILAVAR---KLYGAQYHNMILELNASDDR--GIDV-VRQQIQ 126 (309)
Q Consensus 56 ig~~~~~~~l~~~~~~~---~~~~~ll~G~~G~GKT~l~~~l~~---~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~ 126 (309)
+|++..++.+.+++... ....+.|+|+.|+|||+||..+++ ......+. ....++..... .... ....+.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~~~il~ 209 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYD-SIVWLKDSGTAPKSTFDLFTDILL 209 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBS-EEEEEECCCCSTTHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCC-cEEEEEECCCCCCCHHHHHHHHHH
Confidence 49999999999998654 234489999999999999999997 22222222 22223333321 2222 222233
Q ss_pred Hhhhccc----cccC--------------CCCc-cEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchh
Q 021660 127 DFASTQS----FSFG--------------VKAS-VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPA 187 (309)
Q Consensus 127 ~~~~~~~----~~~~--------------~~~~-~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~ 187 (309)
.+..... .... -..+ +.+|||||++... .. .+ ... +.+.+|+||+.... ...
T Consensus 210 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~--~~-~~----~~~-~gs~ilvTTR~~~v-~~~ 280 (549)
T 2a5y_B 210 MLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE--TI-RW----AQE-LRLRCLVTTRDVEI-SNA 280 (549)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH--HH-HH----HHH-TTCEEEEEESBGGG-GGG
T ss_pred HHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch--hh-cc----ccc-CCCEEEEEcCCHHH-HHH
Confidence 2221100 0000 0123 7899999998732 11 11 111 46778777765432 111
Q ss_pred hhcceeEEEecCCChHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhcCCHHHHHHH
Q 021660 188 LQSRCTRFRFAPLEPVHVTERLKHVIEAEGL-DVTEGGLAALVRLCNGDMRKALNI 242 (309)
Q Consensus 188 l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~l~~i~~~~~g~~r~~~~~ 242 (309)
.......+.+.+++.++..+++.+.+..... .-..+....|++.++|.|-.+..+
T Consensus 281 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~ 336 (549)
T 2a5y_B 281 ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMF 336 (549)
T ss_dssp CCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHH
Confidence 1112256899999999999988876421111 111346788999999998666544
No 101
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.85 E-value=1.1e-07 Score=95.20 Aligned_cols=189 Identities=12% Similarity=0.104 Sum_probs=111.4
Q ss_pred CCCCccccccChHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHHc--cCcccccEEEEecCCCcch---HH
Q 021660 48 RPQSLADVAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLY--GAQYHNMILELNASDDRGI---DV 120 (309)
Q Consensus 48 ~p~~~~~~ig~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~---~~ 120 (309)
-|.....++|++..++.|.+++... ....+.|+|+.|+|||+||..+++... ...+...+..++....... ..
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 3555677999999999999998543 233489999999999999998877631 2222222323333221111 11
Q ss_pred HHHHHHHhhhccc-----------------cccCCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcc
Q 021660 121 VRQQIQDFASTQS-----------------FSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNK 183 (309)
Q Consensus 121 ~~~~~~~~~~~~~-----------------~~~~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 183 (309)
+......+..... ..+..+.++.+|||||++.. . .++...+.+.+|+||+...-
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~-------~~~~~~~~~~ilvTtR~~~~ 269 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--W-------VLKAFDNQCQILLTTRDKSV 269 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--H-------HHTTTCSSCEEEEEESSTTT
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--H-------HHHhhcCCCEEEEEcCCHHH
Confidence 1111111111000 00111124779999999853 1 23333567788888875532
Q ss_pred cchhhhcceeEEEecC-CChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 021660 184 IIPALQSRCTRFRFAP-LEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH 247 (309)
Q Consensus 184 l~~~l~~r~~~i~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~~~ 247 (309)
. .........+.+.+ ++.++..+++...+.... .-.++....|++.++|.|-.+..+-..+.
T Consensus 270 ~-~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~glPLal~~~~~~l~ 332 (1249)
T 3sfz_A 270 T-DSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-EDLPAEAHSIIKECKGSPLVVSLIGALLR 332 (1249)
T ss_dssp T-TTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-TTCCTHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred H-HhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-hhCcHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 2 11222335677775 999999999887763322 22345688999999998876655444443
No 102
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.79 E-value=4.1e-07 Score=96.20 Aligned_cols=207 Identities=18% Similarity=0.185 Sum_probs=128.0
Q ss_pred CCCCCcChhhhcC-----CC--Cccc-cccChHHHH---HHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCccc
Q 021660 36 PDIKASPWVEKYR-----PQ--SLAD-VAAHRDIVD---TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYH 104 (309)
Q Consensus 36 ~~~~~~~~~~~~~-----p~--~~~~-~ig~~~~~~---~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~ 104 (309)
....+.+|.+... |. .+.+ +|-..+..+ .+..++..+. +++|+||+|||||.++..+...+ .+
T Consensus 1257 ~~~~w~~W~~~v~~~~~~~~~~~~~~ilVPT~DTvR~~~ll~~ll~~~~--pvLL~GptGtGKT~li~~~L~~l----~~ 1330 (3245)
T 3vkg_A 1257 DDANWSLWKNKVPSVEVETHKVASPDVVIPTVDTTRHVDVLHAWLSEHR--PLILCGPPGSGKTMTLTSTLRAF----PD 1330 (3245)
T ss_dssp TTCSEEETTCCC---CCCSTTTTCTTCCCCCHHHHHHHHHHHHHHHTTC--CCEEESSTTSSHHHHHHHHGGGC----TT
T ss_pred CCCeeeehhhcCCccccCCccCCcccceecchHHHHHHHHHHHHHHCCC--cEEEECCCCCCHHHHHHHHHHhC----CC
Confidence 3456677776532 22 2223 444444433 4455566553 49999999999999987766554 23
Q ss_pred ccEEEEecCCCcchHHHHHHHHHhhhccc-----cccCCC--CccEEEEEeCCCCCCH------HHHHHHHHHHHHh---
Q 021660 105 NMILELNASDDRGIDVVRQQIQDFASTQS-----FSFGVK--ASVKLVLLDEADAMTK------DAQFALRRVIEKY--- 168 (309)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~--~~~~lliiDe~~~l~~------~~~~~l~~~l~~~--- 168 (309)
..++.++.+.......+...+........ ..+++. .+..|++|||++.-.. ...+.|..+++..
T Consensus 1331 ~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~y 1410 (3245)
T 3vkg_A 1331 FEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFW 1410 (3245)
T ss_dssp EEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEE
T ss_pred CceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeE
Confidence 45667777776666666666654332111 112221 2456889999986543 3567788888741
Q ss_pred ---------cCCceEEEEecCC-----cccchhhhcceeEEEecCCChHHHHHHHHHHHHHcCC------CCCHHHHHHH
Q 021660 169 ---------TKNTRFALICNQV-----NKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGL------DVTEGGLAAL 228 (309)
Q Consensus 169 ---------~~~~~~i~~~~~~-----~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~l~~i 228 (309)
..+..+|.++|.+ ..+.+++.+||.++.++.|+.+++..|+..++...-. .+.+...+..
T Consensus 1411 d~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~vi~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~at 1490 (3245)
T 3vkg_A 1411 RTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAM 1490 (3245)
T ss_dssp ETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCEEECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHH
T ss_pred ECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHH
Confidence 1245567777765 3578999999999999999999999997766543211 1112333333
Q ss_pred HH---------------HhcCCHHHHHHHHHHHHh
Q 021660 229 VR---------------LCNGDMRKALNILQSTHM 248 (309)
Q Consensus 229 ~~---------------~~~g~~r~~~~~l~~~~~ 248 (309)
.+ ++-.|+|.+-+.++.+..
T Consensus 1491 i~ly~~v~~~~lp~~k~HY~FnLRDLsrv~qGll~ 1525 (3245)
T 3vkg_A 1491 VEFYSESQKRFTPDIQAHYIYSPRELSRWDRALLE 1525 (3245)
T ss_dssp HHHHHHHHHHSCTTTSTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcCCCccccHHHHHHHHHHHHH
Confidence 32 123488888888877664
No 103
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=98.70 E-value=6.8e-07 Score=85.79 Aligned_cols=172 Identities=16% Similarity=0.110 Sum_probs=95.0
Q ss_pred cccChHHHHHHHHHHhc-CCCCeEEEECCCCCcHHHHHHHHHHHH-ccCccc--ccEEEEecCCCcchHHHHHHHHHhhh
Q 021660 55 VAAHRDIVDTIDRLTSE-NRLPHLLLYGPPGTGKTSTILAVARKL-YGAQYH--NMILELNASDDRGIDVVRQQIQDFAS 130 (309)
Q Consensus 55 ~ig~~~~~~~l~~~~~~-~~~~~~ll~G~~G~GKT~l~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (309)
.+|++..+..|.+++.. ...+.+.|+|+.|+||||||..+++.. ....+. ..++.+.... ....+...+.....
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~--d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN--SPETVLEMLQKLLY 207 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSS--SHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCC--CHHHHHHHHHHHHh
Confidence 39999999999999876 334459999999999999999998632 011122 3344443322 22222222221110
Q ss_pred ccc-------------------------ccc-CCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCccc
Q 021660 131 TQS-------------------------FSF-GVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKI 184 (309)
Q Consensus 131 ~~~-------------------------~~~-~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l 184 (309)
... ..+ ....++.+|||||++. .+.... .++.+.+|+||+.....
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe~-------f~pGSRILVTTRd~~Va 278 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNA-------FNLSCKILLTTRFKQVT 278 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHHHH-------HHSSCCEEEECSCSHHH
T ss_pred hcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHHHh-------hCCCeEEEEeccChHHH
Confidence 000 000 0012577999999987 222222 23577888888765432
Q ss_pred chhhh-cceeEEEec----CCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHH
Q 021660 185 IPALQ-SRCTRFRFA----PLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245 (309)
Q Consensus 185 ~~~l~-~r~~~i~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~g~~r~~~~~l~~ 245 (309)
. .+. .+...+.++ +++.++..+++.+.+ +.. ..+.. .+.++|.|-.+.-+-..
T Consensus 279 ~-~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~---g~~-~eeL~---~eICgGLPLALkLaGs~ 336 (1221)
T 1vt4_I 279 D-FLSAATTTHISLDHHSMTLTPDEVKSLLLKYL---DCR-PQDLP---REVLTTNPRRLSIIAES 336 (1221)
T ss_dssp H-HHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH---CCC-TTTHH---HHHCCCCHHHHHHHHHH
T ss_pred H-hcCCCeEEEecCccccCCcCHHHHHHHHHHHc---CCC-HHHHH---HHHhCCCHHHHHHHHHH
Confidence 1 111 112334444 789999999988774 222 22222 23477777655444333
No 104
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.70 E-value=2e-07 Score=72.19 Aligned_cols=68 Identities=13% Similarity=0.273 Sum_probs=46.8
Q ss_pred ccEEEEEeCC---CCCCHHHHHHHHHHHHHhcCCceEEEEec--CCcccchhhhcc--eeEEEecCCChHHHHHHHH
Q 021660 141 SVKLVLLDEA---DAMTKDAQFALRRVIEKYTKNTRFALICN--QVNKIIPALQSR--CTRFRFAPLEPVHVTERLK 210 (309)
Q Consensus 141 ~~~lliiDe~---~~l~~~~~~~l~~~l~~~~~~~~~i~~~~--~~~~l~~~l~~r--~~~i~~~~~~~~~~~~~l~ 210 (309)
++.++++||+ ..+.+.....+.++++. ....+|++++ ........+.+| +.++++.+.+.+++..-+.
T Consensus 99 ~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~~l~ 173 (178)
T 1ye8_A 99 RRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILEDIL 173 (178)
T ss_dssp TTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHHHHH
T ss_pred CCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHHHHH
Confidence 5789999995 34556677888888876 2444666663 344555677777 6888988888766655443
No 105
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.59 E-value=1e-07 Score=74.40 Aligned_cols=114 Identities=11% Similarity=0.129 Sum_probs=61.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHH------------HHHhhhccccccCCCCccE
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQ------------IQDFASTQSFSFGVKASVK 143 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 143 (309)
..+++||+|+||||++..++......+....++........+...+.+. ...+... +. .+..
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~----~~--~~~d 78 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKY----IE--EDTR 78 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGG----CC--TTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHH----hc--CCCC
Confidence 4899999999999999888777654444333332111110000000000 0011110 11 1467
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCc------ccchhhhcce-eEEEec
Q 021660 144 LVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVN------KIIPALQSRC-TRFRFA 198 (309)
Q Consensus 144 lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~------~l~~~l~~r~-~~i~~~ 198 (309)
+|+|||++.+.++....|..+.+. +..+|+++...+ ...+.+.+++ .+..+.
T Consensus 79 vviIDE~Q~~~~~~~~~l~~l~~~---~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 79 GVFIDEVQFFNPSLFEVVKDLLDR---GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp EEEECCGGGSCTTHHHHHHHHHHT---TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred EEEEECcccCCHHHHHHHHHHHHC---CCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 999999999977766666666654 556666664332 3445566666 333443
No 106
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.55 E-value=4.8e-06 Score=88.30 Aligned_cols=169 Identities=15% Similarity=0.186 Sum_probs=117.5
Q ss_pred hHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhccccccCC
Q 021660 59 RDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGV 138 (309)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (309)
++....+..++....+ ..+.||+|||||.+++.+++.+ +..++.++|........+...+..+..
T Consensus 591 drcy~tl~~Al~~~~g--g~~~GPaGtGKTet~k~La~~l-----gr~~~vfnC~~~~d~~~~g~i~~G~~~-------- 655 (3245)
T 3vkg_A 591 DRCYLTLTQALESRMG--GNPFGPAGTGKTETVKALGSQL-----GRFVLVFCCDEGFDLQAMSRIFVGLCQ-------- 655 (3245)
T ss_dssp HHHHHHHHHHHHTTCE--EEEECSTTSSHHHHHHHHHHHT-----TCCEEEEECSSCCCHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHhcCC--CCCCCCCCCCHHHHHHHHHHHh-----CCeEEEEeCCCCCCHHHHHHHHhhHhh--------
Confidence 5666677777776633 5789999999999999999998 777888899887766655555554443
Q ss_pred CCccEEEEEeCCCCCCHHHHHHHHHHHH-------Hh--------------cCCceEEEEecC----Ccccchhhhccee
Q 021660 139 KASVKLVLLDEADAMTKDAQFALRRVIE-------KY--------------TKNTRFALICNQ----VNKIIPALQSRCT 193 (309)
Q Consensus 139 ~~~~~lliiDe~~~l~~~~~~~l~~~l~-------~~--------------~~~~~~i~~~~~----~~~l~~~l~~r~~ 193 (309)
.+...++||++++..+....+...+. .. .+.+.+++|.|. ...+++.++.+|.
T Consensus 656 --~GaW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lFr 733 (3245)
T 3vkg_A 656 --CGAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFR 733 (3245)
T ss_dssp --HTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTEE
T ss_pred --cCcEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhcE
Confidence 35678999999999887666555444 11 123455566664 3478899999999
Q ss_pred EEEecCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-------------hcCCHHHHHHHHHHHH
Q 021660 194 RFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRL-------------CNGDMRKALNILQSTH 247 (309)
Q Consensus 194 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~-------------~~g~~r~~~~~l~~~~ 247 (309)
.+.+..|+.+.+.+++ +...|..-.......++.. ++--+|.+...|..+.
T Consensus 734 ~v~m~~Pd~~~i~ei~---L~s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG 797 (3245)
T 3vkg_A 734 SMAMIKPDREMIAQVM---LYSQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAG 797 (3245)
T ss_dssp EEECCSCCHHHHHHHH---HHTTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHH---HHHcccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHH
Confidence 9999999988887765 3344654334444443332 2345788887776554
No 107
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.52 E-value=1.5e-07 Score=74.17 Aligned_cols=60 Identities=10% Similarity=0.098 Sum_probs=40.2
Q ss_pred ccEEEEEeCCCCCCHH---HH--HHHHHHHHHh-cCCceEEEEecCCcccchhhhcce-eEEEecCC
Q 021660 141 SVKLVLLDEADAMTKD---AQ--FALRRVIEKY-TKNTRFALICNQVNKIIPALQSRC-TRFRFAPL 200 (309)
Q Consensus 141 ~~~lliiDe~~~l~~~---~~--~~l~~~l~~~-~~~~~~i~~~~~~~~l~~~l~~r~-~~i~~~~~ 200 (309)
.+.+|||||++.+.+. .. ..++..++.. .....+|+++.....+...+++|+ ..+++.++
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~ 153 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASN 153 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEEC
T ss_pred CceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCc
Confidence 4779999999998321 11 1233333322 234467888888888999999998 66777764
No 108
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.34 E-value=6.1e-06 Score=65.62 Aligned_cols=132 Identities=17% Similarity=0.218 Sum_probs=73.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhcc-----------c-cccC--CCCc
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQ-----------S-FSFG--VKAS 141 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~--~~~~ 141 (309)
++++.|++|+||||++..++..+...|..+.+..++...... ....+....... . ..+. ....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~---~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~~~ 84 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAE---TEALLNGLPQQPLLRTEYRGMTLEEMDLDALLKAA 84 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHH---HHHHHTTSCBCCCEEEEETTEEEEECCHHHHHHHC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChh---HHHHhcCccccCcceeecCCcccccccHHHHHhcC
Confidence 399999999999999999999987777666555555432211 111222111100 0 0000 0025
Q ss_pred cEEEEEeCCCCCCHH-H-HH-HHHHHHHHhcCCceEEEEecCC------------------cccchhhhcceeEEEecCC
Q 021660 142 VKLVLLDEADAMTKD-A-QF-ALRRVIEKYTKNTRFALICNQV------------------NKIIPALQSRCTRFRFAPL 200 (309)
Q Consensus 142 ~~lliiDe~~~l~~~-~-~~-~l~~~l~~~~~~~~~i~~~~~~------------------~~l~~~l~~r~~~i~~~~~ 200 (309)
+.+++|||+-..+.. . .. .+..+.+..+....++.++|-. ..++..+..++..+.+-.+
T Consensus 85 pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~v~lvD~ 164 (228)
T 2r8r_A 85 PSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFDLVLIDL 164 (228)
T ss_dssp CSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSEEEEBCC
T ss_pred CCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCeEEEecC
Confidence 779999998765211 1 11 1112222334444677666521 2445566667766777788
Q ss_pred ChHHHHHHHH
Q 021660 201 EPVHVTERLK 210 (309)
Q Consensus 201 ~~~~~~~~l~ 210 (309)
+++++.+.+.
T Consensus 165 ~p~~l~~rl~ 174 (228)
T 2r8r_A 165 PPRELLERLR 174 (228)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 8888655543
No 109
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.32 E-value=3.2e-06 Score=70.89 Aligned_cols=66 Identities=12% Similarity=0.215 Sum_probs=39.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCC-----CcchHHHHHHHHHhhhccccccCCCCccEEEEEeCCC
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD-----DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEAD 151 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~~ 151 (309)
++|+||||+|||+++.+++.. .+....|+...... ....+.....+...... .+ +||||+++
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~---------~~-LLVIDsI~ 192 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEA---LGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQ---------HR-VIVIDSLK 192 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHH---HHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHH---------CS-EEEEECCT
T ss_pred EEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhh---------CC-EEEEeccc
Confidence 799999999999999999987 23445556551110 01222222222222211 23 99999999
Q ss_pred CCCH
Q 021660 152 AMTK 155 (309)
Q Consensus 152 ~l~~ 155 (309)
.+..
T Consensus 193 aL~~ 196 (331)
T 2vhj_A 193 NVIG 196 (331)
T ss_dssp TTC-
T ss_pred cccc
Confidence 8853
No 110
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.26 E-value=5.4e-06 Score=66.33 Aligned_cols=93 Identities=14% Similarity=0.124 Sum_probs=56.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCC--------cc----------hHHHHHHHHHhhhccccccC
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD--------RG----------IDVVRQQIQDFASTQSFSFG 137 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~--------~~----------~~~~~~~~~~~~~~~~~~~~ 137 (309)
.++++|++|+||||++..++......+..+.++....... .+ ...+.+.+....
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~-------- 85 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNS-------- 85 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT--------
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHh--------
Confidence 4899999999999999999998866665554443222110 00 011111111110
Q ss_pred CCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021660 138 VKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (309)
Q Consensus 138 ~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~ 179 (309)
......+|+|||++.+..+....+..+.+ . ...+|+++.
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~~L~~-~--gi~Vil~Gl 124 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVANILAE-N--GFVVIISGL 124 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHHHHHH-T--TCEEEEECC
T ss_pred hCCCCCEEEEecCccCcHHHHHHHHHHHh-C--CCeEEEEec
Confidence 01146799999999998776555544333 2 567777775
No 111
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=98.16 E-value=7.5e-06 Score=63.65 Aligned_cols=104 Identities=12% Similarity=0.140 Sum_probs=67.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCC-CcchHHHHHHH-------------------------HHh
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD-DRGIDVVRQQI-------------------------QDF 128 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------------------------~~~ 128 (309)
+.+++++++|.||||+|-.++-+..+.+..+.++.+.... ..+...+...+ ...
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 5599999999999999999999998888888777665431 11111111111 100
Q ss_pred hhccccccCCCCccEEEEEeCC------CCCCHHHHHHHHHHHHHhcCCceEEEEecCCc
Q 021660 129 ASTQSFSFGVKASVKLVLLDEA------DAMTKDAQFALRRVIEKYTKNTRFALICNQVN 182 (309)
Q Consensus 129 ~~~~~~~~~~~~~~~lliiDe~------~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 182 (309)
...... .-......+|||||+ ..++ .+.++.++...+....+|+|++..+
T Consensus 109 l~~a~~-~l~~~~yDlvILDEi~~al~~g~l~---~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 109 WQHGKR-MLADPLLDMVVLDELTYMVAYDYLP---LEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHH-HTTCTTCSEEEEETHHHHHHTTSSC---HHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHH-HHhcCCCCEEEEeCCCccccCCCCC---HHHHHHHHHhCcCCCEEEEECCCCc
Confidence 000000 011125789999998 3344 3568889998888999999998764
No 112
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.09 E-value=4.9e-06 Score=76.27 Aligned_cols=114 Identities=21% Similarity=0.250 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHH-------HHhhhc
Q 021660 59 RDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQI-------QDFAST 131 (309)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 131 (309)
+.-...+...+. .+.++|+|+||||||+++..++..+...+..+ . +.+........+.+.+ ..+...
T Consensus 192 ~~Q~~Av~~~~~---~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~V--l-~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~ 265 (574)
T 3e1s_A 192 EEQASVLDQLAG---HRLVVLTGGPGTGKSTTTKAVADLAESLGLEV--G-LCAPTGKAARRLGEVTGRTASTVHRLLGY 265 (574)
T ss_dssp HHHHHHHHHHTT---CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCE--E-EEESSHHHHHHHHHHHTSCEEEHHHHTTE
T ss_pred HHHHHHHHHHHh---CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE--E-EecCcHHHHHHhHhhhcccHHHHHHHHcC
Confidence 444444544443 25699999999999999999999886554332 2 2222222222222211 111111
Q ss_pred cccccC----CCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCC
Q 021660 132 QSFSFG----VKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQV 181 (309)
Q Consensus 132 ~~~~~~----~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~ 181 (309)
....+. ......+|||||+..+.......|+. ..+....+|++++..
T Consensus 266 ~~~~~~~~~~~~~~~dvlIIDEasml~~~~~~~Ll~---~~~~~~~lilvGD~~ 316 (574)
T 3e1s_A 266 GPQGFRHNHLEPAPYDLLIVDEVSMMGDALMLSLLA---AVPPGARVLLVGDTD 316 (574)
T ss_dssp ETTEESCSSSSCCSCSEEEECCGGGCCHHHHHHHHT---TSCTTCEEEEEECTT
T ss_pred CcchhhhhhcccccCCEEEEcCccCCCHHHHHHHHH---hCcCCCEEEEEeccc
Confidence 100011 11246799999999998765555544 445577888887544
No 113
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=98.03 E-value=1.3e-05 Score=63.14 Aligned_cols=101 Identities=12% Similarity=0.157 Sum_probs=54.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhcccc----c-cC-CCCccEEEEEeCC
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSF----S-FG-VKASVKLVLLDEA 150 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~-~~~~~~lliiDe~ 150 (309)
.+++|+.|+||||.+..++......+..+.++...-....+...+.+.+......... . +. ......+|+|||+
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~~~~dvViIDEa 110 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHITEEMDVIAIDEV 110 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECSSGGGGGGGCCSSCCEEEECCG
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHHHHHHHhcCCCEEEEECc
Confidence 7899999999999999998888766665555542222211222222222111110000 0 00 0013679999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCceEEEEecC
Q 021660 151 DAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (309)
Q Consensus 151 ~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~ 180 (309)
+.+.++..+.+..+.+ ....||+++.+
T Consensus 111 QF~~~~~V~~l~~l~~---~~~~Vi~~Gl~ 137 (214)
T 2j9r_A 111 QFFDGDIVEVVQVLAN---RGYRVIVAGLD 137 (214)
T ss_dssp GGSCTTHHHHHHHHHH---TTCEEEEEECS
T ss_pred ccCCHHHHHHHHHHhh---CCCEEEEEecc
Confidence 9998776654444332 26677777753
No 114
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.96 E-value=8.8e-06 Score=63.51 Aligned_cols=96 Identities=13% Similarity=0.204 Sum_probs=53.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHH------------HHhhhccccccCCCCccE
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQI------------QDFASTQSFSFGVKASVK 143 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~ 143 (309)
..+++||.|+||||.+..++......+..+.++........+...+.+.+ .++... .. ....
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~----~~--~~~d 83 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKY----FE--EDTE 83 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHH----CC--TTCS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHH----Hh--ccCC
Confidence 38999999999999999999988666655544431111100000000000 000000 00 1357
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecC
Q 021660 144 LVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (309)
Q Consensus 144 lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~ 180 (309)
+|+|||++.+.++..+.+..+.+ ....+|+++.+
T Consensus 84 vViIDEaqfl~~~~v~~l~~l~~---~~~~Vi~~Gl~ 117 (191)
T 1xx6_A 84 VIAIDEVQFFDDEIVEIVNKIAE---SGRRVICAGLD 117 (191)
T ss_dssp EEEECSGGGSCTHHHHHHHHHHH---TTCEEEEEECS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCCEEEEEecc
Confidence 99999999998776555444433 25567777643
No 115
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.93 E-value=3.4e-05 Score=79.02 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=28.2
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEE
Q 021660 74 LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILE 109 (309)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~ 109 (309)
..+++|+||||||||+++.+++.+....+....|+.
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 355999999999999999999998765555444443
No 116
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.81 E-value=0.00017 Score=57.41 Aligned_cols=99 Identities=11% Similarity=0.179 Sum_probs=56.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhccccc-----cCCCCccEEEEEeCCC
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFS-----FGVKASVKLVLLDEAD 151 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~lliiDe~~ 151 (309)
.+++|+.|+||||.+...+......+....++...-....+ ..+.+.+.......... +.......+|+|||++
T Consensus 22 ~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg-~~i~sr~G~~~~a~~i~~~~di~~~~~~~dvViIDEaQ 100 (234)
T 2orv_A 22 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEGQ 100 (234)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHHTTCSEEEESSGG
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccch-HHHHhhcCCeeEEEecCCHHHHHHHhccCCEEEEEchh
Confidence 89999999999988888888877766666665543333223 33333322111100000 0000145799999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCceEEEEecC
Q 021660 152 AMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (309)
Q Consensus 152 ~l~~~~~~~l~~~l~~~~~~~~~i~~~~~ 180 (309)
.+.. ...+.+.+.+ .+..||+++.+
T Consensus 101 F~~~--v~el~~~l~~--~gi~VI~~GL~ 125 (234)
T 2orv_A 101 FFPD--IVEFCEAMAN--AGKTVIVAALD 125 (234)
T ss_dssp GCTT--HHHHHHHHHH--TTCEEEEECCS
T ss_pred hhhh--HHHHHHHHHh--CCCEEEEEecc
Confidence 9874 5666677766 35677777744
No 117
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.80 E-value=0.00014 Score=58.32 Aligned_cols=25 Identities=40% Similarity=0.398 Sum_probs=21.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHc
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLY 99 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (309)
..++|.||+|+||||++..++..+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3489999999999999999997763
No 118
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.79 E-value=0.00044 Score=54.93 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVAR 96 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~ 96 (309)
.++|+||+|+|||+++..++.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999998
No 119
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.79 E-value=0.00012 Score=59.39 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=27.8
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHH
Q 021660 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
++.....+..++.. ..++++||+|+|||.++..++...
T Consensus 95 ~~~Q~~ai~~~~~~---~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 95 RDYQEKALERWLVD---KRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CHHHHHHHHHHTTT---SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhC---CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 44444455555544 349999999999999998888775
No 120
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.77 E-value=0.00017 Score=66.75 Aligned_cols=103 Identities=18% Similarity=0.284 Sum_probs=57.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccC--cccccEEEEecCCCcchHHHHHHHHHhhhc------------------ccc
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGA--QYHNMILELNASDDRGIDVVRQQIQDFAST------------------QSF 134 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~ 134 (309)
+.++++|+||||||+++..+...+... .....+. +.+........+.+.+...... +..
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vl-l~APTg~AA~~L~e~~~~~~~~l~l~~~~~~~~~~~~~Tih~l 243 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIR-LAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRL 243 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEE-EEBSSHHHHHHHHHHHTHHHHHSSCCSCCCCSCSCCCBTTTSC
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEE-EEeCChhHHHHHHHHHHHHHhcCCCCHHHHhccchhhhhhHhh
Confidence 459999999999999999988877421 1122222 3333323333333333221100 000
Q ss_pred --------cc----CCCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCC
Q 021660 135 --------SF----GVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQV 181 (309)
Q Consensus 135 --------~~----~~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~ 181 (309)
.+ .......+|||||++.+...... .++...+....+|++++..
T Consensus 244 l~~~~~~~~~~~~~~~~l~~d~lIIDEAsml~~~~~~---~Ll~~l~~~~~liLvGD~~ 299 (608)
T 1w36_D 244 LGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMS---RLIDALPDHARVIFLGDRD 299 (608)
T ss_dssp C-----------CTTSCCSCSEEEECSGGGCBHHHHH---HHHHTCCTTCEEEEEECTT
T ss_pred hccCCCchHHHhccCCCCCCCEEEEechhhCCHHHHH---HHHHhCCCCCEEEEEcchh
Confidence 00 00013569999999977754444 4455556678888887543
No 121
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.77 E-value=0.00022 Score=55.56 Aligned_cols=70 Identities=13% Similarity=0.152 Sum_probs=40.6
Q ss_pred CccEEEEEeCCCCC---CHHHHHHHHHHHHHhcCCceEEEE-e--cCC-cccchhhhcc--eeEEEecCCChHHHHHHHH
Q 021660 140 ASVKLVLLDEADAM---TKDAQFALRRVIEKYTKNTRFALI-C--NQV-NKIIPALQSR--CTRFRFAPLEPVHVTERLK 210 (309)
Q Consensus 140 ~~~~lliiDe~~~l---~~~~~~~l~~~l~~~~~~~~~i~~-~--~~~-~~l~~~l~~r--~~~i~~~~~~~~~~~~~l~ 210 (309)
.++.++++||+..+ .......+.++++.. .+.++.+ + .+. ..+...+..+ +.++.+.+-+.+.+.+-+.
T Consensus 104 ~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~--~~~ilgti~vsh~~~~~~vd~i~~~~~~~i~~~~~~nr~~~~~~i~ 181 (189)
T 2i3b_A 104 PGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP--GTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNHLLPDIV 181 (189)
T ss_dssp SCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS--SCCEEEECCCCCSSCCTTHHHHHTTCCSEEEECCSSSGGGHHHHHH
T ss_pred cCCCEEEEeCCCccccccHHHHHHHHHHHhCC--CcEEEEEeecCCCCchHHHHHHeecCCcEEEEeChHhHHHHHHHHH
Confidence 36889999997655 345667777777643 2334312 2 222 1344555443 4778887777666555443
Q ss_pred H
Q 021660 211 H 211 (309)
Q Consensus 211 ~ 211 (309)
.
T Consensus 182 ~ 182 (189)
T 2i3b_A 182 T 182 (189)
T ss_dssp H
T ss_pred H
Confidence 3
No 122
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.74 E-value=0.00032 Score=61.65 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=29.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCcccccEEEEec
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 112 (309)
+++.|++|+||||++..++..+...+..+.++..+.
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 899999999999999999999876666655555443
No 123
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.71 E-value=8.5e-05 Score=62.58 Aligned_cols=32 Identities=28% Similarity=0.549 Sum_probs=26.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEec
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 112 (309)
.++|+||+|+|||+++..+++.+ +..++..+.
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l-----~~~iis~Ds 38 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL-----PCELISVDS 38 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS-----CEEEEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-----CCcEEeccc
Confidence 48999999999999999999997 455555543
No 124
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.70 E-value=0.00075 Score=59.36 Aligned_cols=35 Identities=31% Similarity=0.421 Sum_probs=28.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccCcccccEEEE
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 110 (309)
.+++.|++|+||||++..++..+...+..+.++..
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~ 136 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCS 136 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 38999999999999999999998776665544443
No 125
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.68 E-value=0.00031 Score=57.66 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=22.9
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHHc
Q 021660 74 LPHLLLYGPPGTGKTSTILAVARKLY 99 (309)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (309)
+..++|+|+||+||||+++.+++.+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34599999999999999999999863
No 126
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.65 E-value=0.00019 Score=55.11 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=20.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (309)
.++|.|+||+||||+++.+++.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~ 25 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAK 25 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHhh
Confidence 3899999999999999999983
No 127
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.64 E-value=0.00023 Score=57.53 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=21.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+.|+||+|+|||+++..++...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 49999999999999999999863
No 128
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.63 E-value=0.00025 Score=54.97 Aligned_cols=96 Identities=16% Similarity=0.173 Sum_probs=48.7
Q ss_pred eEEEECCCCCcHH-HHHHHHHHHHccCcccccEEEEecC-CCcchHHHHHHHHHhhhcccc----ccC-CCCccEEEEEe
Q 021660 76 HLLLYGPPGTGKT-STILAVARKLYGAQYHNMILELNAS-DDRGIDVVRQQIQDFASTQSF----SFG-VKASVKLVLLD 148 (309)
Q Consensus 76 ~~ll~G~~G~GKT-~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~lliiD 148 (309)
..+++||.|+||| .|++.+.+... .+..+.++ .+. +.+....+.+.+......... .+. ......+|+||
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~-~~~kvl~~--kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~~~DvIlID 98 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQI-AQYKCLVI--KYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGID 98 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHH-TTCCEEEE--EETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHHTCSEEEES
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH-cCCeEEEE--ccccCccchhhhhhccCCcccceecCCHHHHHHhccCCCEEEEE
Confidence 3899999999999 67777666553 33333333 322 111112222222211111000 000 00134699999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCceEEEEe
Q 021660 149 EADAMTKDAQFALRRVIEKYTKNTRFALIC 178 (309)
Q Consensus 149 e~~~l~~~~~~~l~~~l~~~~~~~~~i~~~ 178 (309)
|++.+ ++..+.+ +.+.+ .+..||+++
T Consensus 99 EaQFf-k~~ve~~-~~L~~--~gk~VI~~G 124 (195)
T 1w4r_A 99 EGQFF-PDIVEFC-EAMAN--AGKTVIVAA 124 (195)
T ss_dssp SGGGC-TTHHHHH-HHHHH--TTCEEEEEE
T ss_pred chhhh-HHHHHHH-HHHHH--CCCeEEEEe
Confidence 99999 6544444 44443 244666665
No 129
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.63 E-value=0.00018 Score=61.64 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=25.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccCcccccEE
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMIL 108 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~ 108 (309)
.++|+||||+|||+++..++......+....++
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi 95 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQAAGGIAAFI 95 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 399999999999999999988775444333333
No 130
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.62 E-value=9e-05 Score=61.92 Aligned_cols=154 Identities=14% Similarity=0.290 Sum_probs=74.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCC-----CcchHHHHHHHHHhhhccccccCCCCccEEEEEeCC
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD-----DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEA 150 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe~ 150 (309)
.++|.||+|+|||+++..+++.+ +..++..++-. ..+...... .+. .+-.--+||..
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds~QvYr~~~igTakp~~--~E~-----------~gvphhlid~~ 66 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL-----NGEVISGDSMQVYRGMDIGTAKITA--EEM-----------DGVPHHLIDIK 66 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT-----TEEEEECCGGGGBTTCCTTTTCCCH--HHH-----------TTCCEESSSCB
T ss_pred EEEEECCCcCCHHHHHHHHHHhC-----ccceeecCcccceeeeeecCCCCCH--HHH-----------cCCCEEEeccC
Confidence 48999999999999999999987 33333222210 000000000 000 01122344432
Q ss_pred --CC-CC-HHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEecCC-ChHHHHHHHHHHHHHcCC-------
Q 021660 151 --DA-MT-KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPL-EPVHVTERLKHVIEAEGL------- 218 (309)
Q Consensus 151 --~~-l~-~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~l~~r~~~i~~~~~-~~~~~~~~l~~~~~~~~~------- 218 (309)
+. .+ ..........+++......+.+++.-......++..-. .+.|. ...+++.-+...+...|.
T Consensus 67 ~~~e~~s~~~F~~~a~~~i~~i~~~gk~pIlVGGTglYi~aLl~g~---~~~~~~~~~~~R~~l~~~~~~~g~~~L~~~L 143 (322)
T 3exa_A 67 DPSESFSVADFQDLATPLITEIHERGRLPFLVGGTGLYVNAVIHQF---NLGDIRADEDYRHELEAFVNSYGVQALHDKL 143 (322)
T ss_dssp CTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEESCCHHHHHHHHHTC---CCCCCBCCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred ChhhhccHHHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHcCC---cCCCCCCCHHHHHHHHHHHHhcCHHHHHHHH
Confidence 22 22 22234445555554333333333333323334443332 34443 345677777777666553
Q ss_pred -CCCHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCc
Q 021660 219 -DVTEGGLAALVRLCNGDMRKALNILQSTHMASQQI 253 (309)
Q Consensus 219 -~~~~~~l~~i~~~~~g~~r~~~~~l~~~~~~~~~i 253 (309)
.++++.. .+....|.+.++..|+-....+..+
T Consensus 144 ~~~DP~~A---~~i~pnd~~Ri~RALEV~~~TG~~~ 176 (322)
T 3exa_A 144 SKIDPKAA---AAIHPNNYRRVIRALEIIKLTGKTV 176 (322)
T ss_dssp HTTCHHHH---TTSCTTCHHHHHHHHHHHHHTC---
T ss_pred HhhCHHHH---hhcCcccHHHHHHHHHHHHHHCCCH
Confidence 2233221 1223679999999998876655433
No 131
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.61 E-value=0.00024 Score=60.97 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=25.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccCcccccEE
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMIL 108 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~ 108 (309)
.++|+|+||+|||+++..++..+...+....++
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyi 97 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFI 97 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 399999999999999999998875444333333
No 132
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.61 E-value=0.00059 Score=58.81 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=25.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccCcccccEE
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMIL 108 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~ 108 (309)
.++|+|+||+|||+++..++..+...+..+.|+
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi 108 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFI 108 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 389999999999999999988875444333333
No 133
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.61 E-value=0.00049 Score=58.96 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=22.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCc
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQ 102 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~ 102 (309)
++|+||||+|||||+..++..+...+
T Consensus 64 ~~I~GppGsGKSTLal~la~~~~~~g 89 (356)
T 3hr8_A 64 VEIFGQESSGKTTLALHAIAEAQKMG 89 (356)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 89999999999999999998875443
No 134
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.61 E-value=0.002 Score=51.04 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|+|+||+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999886
No 135
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.59 E-value=0.00026 Score=58.13 Aligned_cols=25 Identities=32% Similarity=0.595 Sum_probs=22.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHc
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLY 99 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (309)
..++|.||+|+||||+++.++..+.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhCC
Confidence 3499999999999999999998874
No 136
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.58 E-value=0.0016 Score=53.14 Aligned_cols=23 Identities=35% Similarity=0.660 Sum_probs=21.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.||+|+||||+++.+++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 47999999999999999999987
No 137
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.57 E-value=0.0002 Score=54.79 Aligned_cols=18 Identities=28% Similarity=0.516 Sum_probs=16.4
Q ss_pred eEEEECCCCCcHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILA 93 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~ 93 (309)
.+.|.||+|+||||+++.
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 389999999999999993
No 138
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.56 E-value=0.00055 Score=55.24 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=17.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVAR 96 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~ 96 (309)
..+++.||+|+|||+++....-
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHHh
Confidence 4599999999999987665543
No 139
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.56 E-value=0.0013 Score=54.99 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=21.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHcc
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYG 100 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (309)
.++|+||||+|||+|+..++.....
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~ 54 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMR 54 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3899999999999999988877654
No 140
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.55 E-value=8.2e-05 Score=58.55 Aligned_cols=100 Identities=11% Similarity=0.101 Sum_probs=50.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhcccc----cc-C-CCCccEEEEEeC
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSF----SF-G-VKASVKLVLLDE 149 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~-~~~~~~lliiDe 149 (309)
..+++||-|+||||.+-..+......+....++...-....+...+.+.+......... .+ . ......+|+|||
T Consensus 30 I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i~~~~dvV~IDE 109 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHDLTNVDVIGIDE 109 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGSCCTTCSEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHHHhcCCCEEEEec
Confidence 37999999999999655555665544544433322211111111111111100000000 00 0 012467999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCceEEEEe
Q 021660 150 ADAMTKDAQFALRRVIEKYTKNTRFALIC 178 (309)
Q Consensus 150 ~~~l~~~~~~~l~~~l~~~~~~~~~i~~~ 178 (309)
++.+.++..+.+..+.+ .+.+||+.+
T Consensus 110 aQFf~~~~v~~l~~la~---~gi~Vi~~G 135 (219)
T 3e2i_A 110 VQFFDDEIVSIVEKLSA---DGHRVIVAG 135 (219)
T ss_dssp GGGSCTHHHHHHHHHHH---TTCEEEEEE
T ss_pred hhcCCHHHHHHHHHHHH---CCCEEEEee
Confidence 99999887777777663 245566555
No 141
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.53 E-value=0.0011 Score=56.83 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=23.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHcc
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYG 100 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (309)
..++|.||+|+||||+++.++..+..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccC
Confidence 35999999999999999999988753
No 142
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.52 E-value=0.00026 Score=54.04 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.|+||+||||+++.+ +.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 4899999999999999999 654
No 143
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.51 E-value=0.00031 Score=61.83 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=21.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
..++|+|+||+||||+++.++..+
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHhc
Confidence 348999999999999999998876
No 144
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.48 E-value=0.0021 Score=50.87 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|+|+||+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999987
No 145
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.48 E-value=0.00042 Score=59.92 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.9
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
..++|+||+|+||||+++.++...
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 349999999999999999999876
No 146
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.41 E-value=0.0018 Score=55.38 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
++|+||||+|||+++..++...
T Consensus 125 ~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 125 TEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp EEEECCTTCTHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999874
No 147
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.41 E-value=0.00051 Score=70.66 Aligned_cols=99 Identities=19% Similarity=0.307 Sum_probs=58.9
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcch-------------------HHHHHHHHHhhhccccc
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI-------------------DVVRQQIQDFASTQSFS 135 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~ 135 (309)
.+++++||||+|||+++.+++.+....+....|+.+......-. +........+...
T Consensus 1082 ~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~~---- 1157 (2050)
T 3cmu_A 1082 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS---- 1157 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH----
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHHh----
Confidence 45999999999999999999988766655555554433221100 0111111111111
Q ss_pred cCCCCccEEEEEeCCCCCCHHH------------------HHHHHHHHHHhcCCceEEEEecCC
Q 021660 136 FGVKASVKLVLLDEADAMTKDA------------------QFALRRVIEKYTKNTRFALICNQV 181 (309)
Q Consensus 136 ~~~~~~~~lliiDe~~~l~~~~------------------~~~l~~~l~~~~~~~~~i~~~~~~ 181 (309)
..+.+|+||++..+.+.. ...|++++........+++++|..
T Consensus 1158 ----~~~dlvVIDsl~~L~~~~e~~~~~g~~~~gl~aR~~~~~L~~L~~~l~e~~stiI~tN~~ 1217 (2050)
T 3cmu_A 1158 ----GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 1217 (2050)
T ss_dssp ----TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred ----CCCCEEEECCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHhCCeEEEEecCC
Confidence 147899999998884321 244666676655555666666543
No 148
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.41 E-value=0.00018 Score=55.27 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=22.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
..++|+|++|+||||+++.+++.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 348999999999999999999997
No 149
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.40 E-value=0.0014 Score=51.62 Aligned_cols=23 Identities=35% Similarity=0.686 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.||||+||+|.+..+++.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999987
No 150
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.40 E-value=0.0004 Score=70.47 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=22.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCc
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQ 102 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~ 102 (309)
+++|||||||||+++.+++.+....+
T Consensus 1085 ~l~~G~~g~GKT~la~~~~~~~~~~g 1110 (1706)
T 3cmw_A 1085 VEIYGPESSGKTTLTLQVIAAAQREG 1110 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCChHHHHHHHHHHhhhcC
Confidence 99999999999999999998875443
No 151
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.40 E-value=0.0042 Score=52.44 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=22.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCc
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQ 102 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~ 102 (309)
++|.|+||+|||+++..++......+
T Consensus 71 ~li~G~pG~GKTtl~l~ia~~~a~~g 96 (315)
T 3bh0_A 71 VLIAARPSMGKTAFALKQAKNMSDND 96 (315)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 99999999999999999987764443
No 152
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.39 E-value=0.0026 Score=51.50 Aligned_cols=25 Identities=24% Similarity=0.492 Sum_probs=22.5
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Q 021660 74 LPHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
+..++|+||||+||||+++.+++.+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3459999999999999999999887
No 153
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.39 E-value=0.0017 Score=52.46 Aligned_cols=24 Identities=38% Similarity=0.362 Sum_probs=20.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHc
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLY 99 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~ 99 (309)
.++|+||||+|||+++..++....
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999988877654
No 154
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.37 E-value=0.00049 Score=55.84 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=19.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVAR 96 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~ 96 (309)
..+.|.||+|+||||+++.++.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 3499999999999999999984
No 155
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.37 E-value=0.00059 Score=58.03 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHc
Q 021660 61 IVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99 (309)
Q Consensus 61 ~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (309)
+++.+.-.+..+ ..+.|.||+|+||||+++.++..+.
T Consensus 160 ~l~~l~~~i~~g--~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 160 AISAIKDGIAIG--KNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HHHHHHHHHHHT--CCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred HHhhhhhhccCC--CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 455555556555 3599999999999999999998864
No 156
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=97.37 E-value=0.00074 Score=53.35 Aligned_cols=38 Identities=16% Similarity=0.291 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHH
Q 021660 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
++.-...+..++.+ .++++.+|+|+|||.++..++...
T Consensus 35 ~~~Q~~~i~~~~~~---~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 35 RPYQMEVAQPALEG---KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CHHHHHHHHHHHTT---CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcC---CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 33444444444433 459999999999999887777654
No 157
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.37 E-value=0.0015 Score=52.13 Aligned_cols=22 Identities=27% Similarity=0.378 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
+.|.||+|+||||+++.++...
T Consensus 28 ~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 28 TEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999865
No 158
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.36 E-value=0.0006 Score=55.04 Aligned_cols=43 Identities=12% Similarity=0.286 Sum_probs=32.3
Q ss_pred CccEEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CceEEEEecCCc
Q 021660 140 ASVKLVLLDEA-DAMTKDAQFALRRVIEKYTK--NTRFALICNQVN 182 (309)
Q Consensus 140 ~~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~--~~~~i~~~~~~~ 182 (309)
.++.++++||. ..+.+.....+.+++.+... ...+|++|++..
T Consensus 162 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~ 207 (235)
T 3tif_A 162 NNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207 (235)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH
Confidence 37889999995 45677788888888887642 566777887664
No 159
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.36 E-value=0.00019 Score=55.48 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=22.9
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Q 021660 74 LPHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
++.++|+|++|+||||+++.+++.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3469999999999999999999998
No 160
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.36 E-value=0.00017 Score=55.01 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=22.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
..++|.|++|+||||+++.+++.+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999997
No 161
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.35 E-value=0.0011 Score=52.55 Aligned_cols=105 Identities=14% Similarity=0.240 Sum_probs=56.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHccCc---c---------cccEEEEecCCCcchHHHHHHHHHhhhccccccCCCC
Q 021660 73 RLPHLLLYGPPGTGKTSTILAVARKLYGAQ---Y---------HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKA 140 (309)
Q Consensus 73 ~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~---~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (309)
....++|.|++|+|||+++..+........ . ...+..++....... ......+...... ..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---~~~~~~~~~~~~~----~~ 83 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKL---RYKLSDYLKTRAK----FV 83 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTGGGSSCEEEECCCCGGG---THHHHHHHHHHGG----GE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEeeCceEEEEECCCcHHH---HHHHHHHHHhccc----cC
Confidence 345699999999999999999987653221 1 112223443332222 2222222211000 01
Q ss_pred ccEEEEEeCC-C-CCCHHHHHHHHHHHHH----hcCCceEEEEecCCccc
Q 021660 141 SVKLVLLDEA-D-AMTKDAQFALRRVIEK----YTKNTRFALICNQVNKI 184 (309)
Q Consensus 141 ~~~lliiDe~-~-~l~~~~~~~l~~~l~~----~~~~~~~i~~~~~~~~l 184 (309)
..-++++|-- + .-.......+..++.. .+...+++++.|..+..
T Consensus 84 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 133 (218)
T 1nrj_B 84 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF 133 (218)
T ss_dssp EEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred CEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhc
Confidence 3457788865 2 1224445556666654 23567788888877654
No 162
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.34 E-value=0.0057 Score=47.44 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=23.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCcc
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQY 103 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~ 103 (309)
++|.|++|+||||+++.+++.+...+.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~ 29 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGK 29 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 789999999999999999998754433
No 163
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.34 E-value=0.00019 Score=59.80 Aligned_cols=23 Identities=30% Similarity=0.638 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.||+|+|||+++..+++.+
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCccCHHHHHHHHHHhC
Confidence 38999999999999999999997
No 164
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.33 E-value=0.00022 Score=58.95 Aligned_cols=52 Identities=8% Similarity=0.164 Sum_probs=35.6
Q ss_pred CccEEEEEeCC-CCCCHHHHHHHHHHHHHhc--CCceEEEEecCCcccchhhhcce
Q 021660 140 ASVKLVLLDEA-DAMTKDAQFALRRVIEKYT--KNTRFALICNQVNKIIPALQSRC 192 (309)
Q Consensus 140 ~~~~lliiDe~-~~l~~~~~~~l~~~l~~~~--~~~~~i~~~~~~~~l~~~l~~r~ 192 (309)
.++.+|++||. ..+.+.....+.+++.+.. ....+|+++.+...+. .+..|.
T Consensus 160 ~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~-~~~drv 214 (275)
T 3gfo_A 160 MEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVP-LYCDNV 214 (275)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGG-GGCSEE
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-HhCCEE
Confidence 37889999995 4577778888888887654 2556777777665443 333443
No 165
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.32 E-value=0.0044 Score=49.14 Aligned_cols=39 Identities=18% Similarity=0.356 Sum_probs=25.7
Q ss_pred ccEEEEEeCCCCCCH--HHHHHHHHHHHHhcCCceEEEEec
Q 021660 141 SVKLVLLDEADAMTK--DAQFALRRVIEKYTKNTRFALICN 179 (309)
Q Consensus 141 ~~~lliiDe~~~l~~--~~~~~l~~~l~~~~~~~~~i~~~~ 179 (309)
.-.++|+||+|.+.. .....+..++...+....+++.|.
T Consensus 158 ~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 198 (220)
T 1t6n_A 158 HIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSA 198 (220)
T ss_dssp TCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEES
T ss_pred cCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEe
Confidence 457899999998743 444556666666655566665553
No 166
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.31 E-value=0.00016 Score=56.32 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=24.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccCcc
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGAQY 103 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~ 103 (309)
.++|.|+||+||||+++.+++.+...+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~ 30 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGI 30 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCc
Confidence 4899999999999999999999854433
No 167
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.28 E-value=0.00029 Score=55.34 Aligned_cols=25 Identities=44% Similarity=0.527 Sum_probs=23.0
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Q 021660 74 LPHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
+..++|.|++|+||||+++.+++.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3469999999999999999999998
No 168
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.27 E-value=0.012 Score=53.30 Aligned_cols=69 Identities=17% Similarity=0.226 Sum_probs=46.3
Q ss_pred cEEEEEeCCCCCCH----HHHHHHHHHHHHhc-CCceEEEEecCCc--ccchhhhcce-eEEEecCCChHHHHHHHH
Q 021660 142 VKLVLLDEADAMTK----DAQFALRRVIEKYT-KNTRFALICNQVN--KIIPALQSRC-TRFRFAPLEPVHVTERLK 210 (309)
Q Consensus 142 ~~lliiDe~~~l~~----~~~~~l~~~l~~~~-~~~~~i~~~~~~~--~l~~~l~~r~-~~i~~~~~~~~~~~~~l~ 210 (309)
+.+|||||++.+.. +....|..+...-. ....+|++|..+. .+...+++.+ ..+.|...+..+...++.
T Consensus 344 ~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp EEEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred cEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence 46899999987743 33444555555433 3445666665554 5677788887 778888888888877764
No 169
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.26 E-value=0.0037 Score=56.10 Aligned_cols=69 Identities=17% Similarity=0.223 Sum_probs=43.3
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHH----Hhc-CCceEEEEecCCc--ccchhhhcce-eEEEecCCChHHHHHHHHH
Q 021660 143 KLVLLDEADAMTKDAQFALRRVIE----KYT-KNTRFALICNQVN--KIIPALQSRC-TRFRFAPLEPVHVTERLKH 211 (309)
Q Consensus 143 ~lliiDe~~~l~~~~~~~l~~~l~----~~~-~~~~~i~~~~~~~--~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~ 211 (309)
.+|+|||+..+.......+..++. .-. ....+|++|..+. .+...+++.+ .++.|.-.+..+.+.++..
T Consensus 299 ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr~ilg~ 375 (512)
T 2ius_A 299 IVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQ 375 (512)
T ss_dssp EEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHHHHSS
T ss_pred EEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHHHhcCC
Confidence 489999997665432223333333 222 2556777776654 4666677776 7788888888888777653
No 170
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.26 E-value=0.00033 Score=54.33 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=23.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccC
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGA 101 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~ 101 (309)
..++|.|++|+||||+++.+++.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 30 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKE 30 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 358999999999999999999988433
No 171
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.26 E-value=0.0027 Score=53.04 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=22.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHcc
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYG 100 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (309)
.++|.||+|+||||++..++..+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4999999999999999999988753
No 172
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.25 E-value=0.00063 Score=63.48 Aligned_cols=63 Identities=19% Similarity=0.312 Sum_probs=40.9
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHH
Q 021660 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQI 125 (309)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (309)
++.-.+++...+... +..+|.||||||||+++..+..++...+.. +-+.+..+...+.+.+.+
T Consensus 191 N~~Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~---ILv~a~TN~AvD~i~erL 253 (646)
T 4b3f_X 191 DTSQKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVKQGLK---VLCCAPSNIAVDNLVERL 253 (646)
T ss_dssp CHHHHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHHHTTCC---EEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHHhCCCe---EEEEcCchHHHHHHHHHH
Confidence 566677777777654 458999999999999888877777554432 223333334444444444
No 173
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.25 E-value=0.00029 Score=53.98 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=22.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
..++|.|+||+||||+++.+++.+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 359999999999999999999998
No 174
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=97.24 E-value=0.0019 Score=51.38 Aligned_cols=39 Identities=23% Similarity=0.389 Sum_probs=24.7
Q ss_pred ccEEEEEeCCCCCCHH-HHHHHHHHHHHhcCCceEEEEec
Q 021660 141 SVKLVLLDEADAMTKD-AQFALRRVIEKYTKNTRFALICN 179 (309)
Q Consensus 141 ~~~lliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~ 179 (309)
...+||+||+|.+... ....+..++...+....+++.|.
T Consensus 155 ~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSA 194 (224)
T 1qde_A 155 KIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSA 194 (224)
T ss_dssp TCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEES
T ss_pred hCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEe
Confidence 3578999999986542 23445666666555665555543
No 175
>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.24 E-value=0.0047 Score=45.32 Aligned_cols=120 Identities=14% Similarity=0.061 Sum_probs=70.8
Q ss_pred HhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEe
Q 021660 69 TSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLD 148 (309)
Q Consensus 69 ~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD 148 (309)
++++-.+.++|+|+.-.-....+..+.+.+...++. +.+.....+...+.+.+. ...+.+. |+ ++++|+|.
T Consensus 13 l~~~~~pvyll~G~E~~l~~~~~~~i~~~~~~~~~~----e~~~~~~~~~~~~~~l~~-~~~s~sl-F~---~rrlV~v~ 83 (140)
T 1jql_B 13 LNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFE----EHHTFSIDPNTDWNAIFS-LCQAMSL-FA---SRQTLLLL 83 (140)
T ss_dssp HHHCCCSEEEEESSCHHHHHHHHHHHHHHHHHTTCC----EEECCCCSTTCCHHHHHH-HHHCCCT-TC---CCEEEEEE
T ss_pred HhccCCceEEEEcCcHHHHHHHHHHHHHHHHHCCCc----ceeEEEecCCCCHHHHHH-HHhcCCC-CC---CCEEEEEE
Confidence 333444669999999666666666666655433322 222211111123333333 2333332 22 68999999
Q ss_pred CCCC-CCHHHHHHHHHHHHHhcCCceEEEEecCCc------ccchhhhcceeEEEe
Q 021660 149 EADA-MTKDAQFALRRVIEKYTKNTRFALICNQVN------KIIPALQSRCTRFRF 197 (309)
Q Consensus 149 e~~~-l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~------~l~~~l~~r~~~i~~ 197 (309)
+.+. +..+..+.|..+++.+++++.+|++....+ ++.+++......+.+
T Consensus 84 ~~~~~~~~~~~~~L~~yl~~p~~~~~lvi~~~kld~~~~~~k~~k~l~k~g~~v~~ 139 (140)
T 1jql_B 84 LPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTC 139 (140)
T ss_dssp CCTTCSCTTHHHHHHHHHHHCCSSCCEEEECSSCCTTGGGSHHHHHHGGGCEEEEC
T ss_pred CCCCCCChHHHHHHHHHHhcCCCCEEEEEEeCCcChhHHhhHHHHHHHhCeEEEEe
Confidence 8754 556667889999999888999988875432 455566555555544
No 176
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.24 E-value=0.00033 Score=53.91 Aligned_cols=24 Identities=46% Similarity=0.689 Sum_probs=22.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
..++|+|++|+||||+++.+++.+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 459999999999999999999987
No 177
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=97.23 E-value=0.00091 Score=61.69 Aligned_cols=43 Identities=21% Similarity=0.307 Sum_probs=29.3
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccC
Q 021660 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101 (309)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~ 101 (309)
|...+..+...+..+. .++++++|+|+|||..+-.++..+...
T Consensus 183 Q~~ai~~~~~~~~~~~-~~~ll~~~TGsGKT~~~~~~~~~l~~~ 225 (590)
T 3h1t_A 183 QQIAINRAVQSVLQGK-KRSLITMATGTGKTVVAFQISWKLWSA 225 (590)
T ss_dssp HHHHHHHHHHHHHTTC-SEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCC-CceEEEecCCCChHHHHHHHHHHHHhc
Confidence 4444444444444432 458999999999999988888776443
No 178
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=97.22 E-value=0.0027 Score=49.73 Aligned_cols=38 Identities=29% Similarity=0.434 Sum_probs=24.0
Q ss_pred ccEEEEEeCCCCCCH-HHHHHHHHHHHHhcCCceEEEEe
Q 021660 141 SVKLVLLDEADAMTK-DAQFALRRVIEKYTKNTRFALIC 178 (309)
Q Consensus 141 ~~~lliiDe~~~l~~-~~~~~l~~~l~~~~~~~~~i~~~ 178 (309)
...+||+||+|.+.. .....+..++...+....+++.|
T Consensus 146 ~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~S 184 (206)
T 1vec_A 146 HVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYS 184 (206)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEE
T ss_pred cCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEE
Confidence 457899999997654 33455556666555455555544
No 179
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.21 E-value=0.00034 Score=59.51 Aligned_cols=38 Identities=21% Similarity=0.421 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHc
Q 021660 62 VDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99 (309)
Q Consensus 62 ~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (309)
++.+...+..+..++++|.|++|+||||+++.+++.+.
T Consensus 12 l~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 12 LQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 33444444556566799999999999999999999873
No 180
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.20 E-value=0.00024 Score=55.11 Aligned_cols=29 Identities=34% Similarity=0.448 Sum_probs=24.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccCcc
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGAQY 103 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~ 103 (309)
..++|.|++|+||||+++.++..+...+.
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~ 42 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGY 42 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCC
Confidence 34899999999999999999999854443
No 181
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.20 E-value=0.00037 Score=52.98 Aligned_cols=26 Identities=35% Similarity=0.517 Sum_probs=22.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Q 021660 73 RLPHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 73 ~~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+.+++|.|++|+||||+++.+++.+
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 35669999999999999999999998
No 182
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.20 E-value=0.0012 Score=56.93 Aligned_cols=43 Identities=16% Similarity=0.277 Sum_probs=31.2
Q ss_pred ccEEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CceEEEEecCCcc
Q 021660 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTK--NTRFALICNQVNK 183 (309)
Q Consensus 141 ~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~--~~~~i~~~~~~~~ 183 (309)
++.+|++||. -.|.......+...+.+... ...+|++|.+...
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~e 196 (381)
T 3rlf_A 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVE 196 (381)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHH
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 6789999994 56677777888888876532 5667777776543
No 183
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.20 E-value=0.0048 Score=52.82 Aligned_cols=22 Identities=27% Similarity=0.378 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
+.|+||+|+||||++..++...
T Consensus 134 ~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 134 TEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999886
No 184
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.19 E-value=0.0064 Score=54.10 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHc
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLY 99 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~ 99 (309)
.++|.|+||+|||+++..++..+.
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 399999999999999999998874
No 185
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.19 E-value=0.00094 Score=56.01 Aligned_cols=43 Identities=21% Similarity=0.367 Sum_probs=32.0
Q ss_pred ccEEEEEeCCC-CCCHHHHHHHHHHHHHhcCCceEEEEecCCcc
Q 021660 141 SVKLVLLDEAD-AMTKDAQFALRRVIEKYTKNTRFALICNQVNK 183 (309)
Q Consensus 141 ~~~lliiDe~~-~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 183 (309)
++.++++||.- .+.......+.+.+........+|+++.+...
T Consensus 208 ~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~ 251 (306)
T 3nh6_A 208 APGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLST 251 (306)
T ss_dssp CCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHH
Confidence 67899999964 56677778888888876656677777776543
No 186
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.17 E-value=0.0025 Score=54.89 Aligned_cols=44 Identities=16% Similarity=0.294 Sum_probs=31.6
Q ss_pred CccEEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CceEEEEecCCcc
Q 021660 140 ASVKLVLLDEA-DAMTKDAQFALRRVIEKYTK--NTRFALICNQVNK 183 (309)
Q Consensus 140 ~~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~--~~~~i~~~~~~~~ 183 (309)
.++.++++||. ..|.......+...+.+... ...+|++|++...
T Consensus 158 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 204 (372)
T 1v43_A 158 VEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVE 204 (372)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 37889999994 56777778888888876532 4567777776543
No 187
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.16 E-value=0.0092 Score=46.29 Aligned_cols=100 Identities=15% Similarity=0.140 Sum_probs=52.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccC------------------cccccEEEEecCCCcchHHHHHHHHHhhhccccccC
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGA------------------QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFG 137 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (309)
.+++.|.+|+|||+|++.+....... +....+..++................+..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~------- 94 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR------- 94 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH-------
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc-------
Confidence 49999999999999998776643211 01112222232221111111000011111
Q ss_pred CCCccEEEEEeCCCCCCHHHHHHHHHHHHHh---cCCceEEEEecCCccc
Q 021660 138 VKASVKLVLLDEADAMTKDAQFALRRVIEKY---TKNTRFALICNQVNKI 184 (309)
Q Consensus 138 ~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~---~~~~~~i~~~~~~~~l 184 (309)
....-++++|=-+. ..+....+..++... ..+.++++++|..+..
T Consensus 95 -~~~~~i~v~d~~~~-~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~ 142 (196)
T 3llu_A 95 -GTGALIYVIDAQDD-YMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGL 142 (196)
T ss_dssp -TCSEEEEEEETTSC-CHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred -cCCEEEEEEECCCc-hHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccC
Confidence 11456777775554 444555555666543 4577888888887743
No 188
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.15 E-value=0.0048 Score=53.77 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+.|+||+|+|||||+..++-..
T Consensus 180 i~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEEcCCCCChHHHHHHHHHHh
Confidence 38999999999999999876543
No 189
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.15 E-value=0.0003 Score=54.36 Aligned_cols=24 Identities=38% Similarity=0.654 Sum_probs=22.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
+.++|+|+||+||||+++.+++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 348999999999999999999987
No 190
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.15 E-value=0.0022 Score=55.11 Aligned_cols=44 Identities=14% Similarity=0.273 Sum_probs=31.3
Q ss_pred CccEEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CceEEEEecCCcc
Q 021660 140 ASVKLVLLDEA-DAMTKDAQFALRRVIEKYTK--NTRFALICNQVNK 183 (309)
Q Consensus 140 ~~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~--~~~~i~~~~~~~~ 183 (309)
.++.++++||. ..|.......+...+.+... ...+|++|++...
T Consensus 150 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 196 (362)
T 2it1_A 150 KEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAE 196 (362)
T ss_dssp TCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 37889999994 56677777888888776532 4567777776543
No 191
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.15 E-value=0.018 Score=42.83 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=20.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+++.|++|+|||+++..+...-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38999999999999999988654
No 192
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.14 E-value=0.00047 Score=54.95 Aligned_cols=25 Identities=28% Similarity=0.618 Sum_probs=22.9
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Q 021660 74 LPHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
+..++|.|+||+||||+++.+++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3569999999999999999999987
No 193
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.14 E-value=0.0027 Score=53.23 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=27.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCcccccEEEE
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 110 (309)
++|.||+|+||||++..++..+...+..+.++..
T Consensus 107 i~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 8999999999999999999988655544444433
No 194
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.14 E-value=0.00035 Score=54.87 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=23.1
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Q 021660 72 NRLPHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 72 ~~~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.....++|.||+|+||||+++.++..+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 344569999999999999999999987
No 195
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.13 E-value=0.0023 Score=54.88 Aligned_cols=44 Identities=14% Similarity=0.294 Sum_probs=31.5
Q ss_pred CccEEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CceEEEEecCCcc
Q 021660 140 ASVKLVLLDEA-DAMTKDAQFALRRVIEKYTK--NTRFALICNQVNK 183 (309)
Q Consensus 140 ~~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~--~~~~i~~~~~~~~ 183 (309)
.++.++++||. ..|.......+...+.+... ...+|++|++...
T Consensus 150 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 196 (359)
T 2yyz_A 150 KQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAE 196 (359)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 37889999994 56777777888888776532 4567777776543
No 196
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.13 E-value=0.0019 Score=52.73 Aligned_cols=43 Identities=12% Similarity=0.261 Sum_probs=31.2
Q ss_pred CccEEEEEeCC-CCCCHHHHHHHHHHHHHhc-CCceEEEEecCCc
Q 021660 140 ASVKLVLLDEA-DAMTKDAQFALRRVIEKYT-KNTRFALICNQVN 182 (309)
Q Consensus 140 ~~~~lliiDe~-~~l~~~~~~~l~~~l~~~~-~~~~~i~~~~~~~ 182 (309)
.++.++++||. ..+.+.....+.+++.+.. ....+|++|.+..
T Consensus 163 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~ 207 (256)
T 1vpl_A 163 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML 207 (256)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence 37889999995 4667778888888888764 3456777776543
No 197
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.13 E-value=0.0023 Score=53.53 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=20.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.|+||+||||+++.+++.+
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 38999999999999999999863
No 198
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.13 E-value=0.00039 Score=53.09 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=22.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
..++|+||+|+||||+++.++..+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 349999999999999999999987
No 199
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.13 E-value=0.001 Score=54.54 Aligned_cols=43 Identities=14% Similarity=0.314 Sum_probs=31.2
Q ss_pred CccEEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CceEEEEecCCc
Q 021660 140 ASVKLVLLDEA-DAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (309)
Q Consensus 140 ~~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~-~~~~i~~~~~~~ 182 (309)
.++.++++||. ..+.+.....+.+++.+... ...+|++|.+..
T Consensus 176 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~ 220 (263)
T 2olj_A 176 MEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG 220 (263)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence 37889999995 46777888888888887532 456677776543
No 200
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.12 E-value=0.0012 Score=57.04 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=22.9
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHcc
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYG 100 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (309)
..++|.||+|+||||+++.++..+..
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 34999999999999999999998743
No 201
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.12 E-value=0.00031 Score=54.37 Aligned_cols=24 Identities=42% Similarity=0.570 Sum_probs=22.0
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Q 021660 74 LPHLLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~ 97 (309)
...++|+|++|+||||+++.+++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 345999999999999999999998
No 202
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.11 E-value=0.00082 Score=55.97 Aligned_cols=22 Identities=45% Similarity=0.611 Sum_probs=21.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
++|.||||+||||+++.+++.+
T Consensus 36 ivl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 36 FLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999886
No 203
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.11 E-value=0.00074 Score=55.53 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=31.5
Q ss_pred ccEEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CceEEEEecCCcc
Q 021660 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTK--NTRFALICNQVNK 183 (309)
Q Consensus 141 ~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~--~~~~i~~~~~~~~ 183 (309)
++.+|++||. ..+.+.....+.+++.+... ...+|+++.+...
T Consensus 165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~ 210 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNL 210 (266)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHH
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHH
Confidence 7999999995 45677888888888887642 3467777766543
No 204
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.09 E-value=0.0019 Score=55.30 Aligned_cols=44 Identities=14% Similarity=0.294 Sum_probs=31.3
Q ss_pred CccEEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CceEEEEecCCcc
Q 021660 140 ASVKLVLLDEA-DAMTKDAQFALRRVIEKYTK--NTRFALICNQVNK 183 (309)
Q Consensus 140 ~~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~--~~~~i~~~~~~~~ 183 (309)
.++.++++||. ..|.......+...+.+... ...+|++|.+...
T Consensus 162 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 208 (355)
T 1z47_A 162 PRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEE 208 (355)
T ss_dssp TCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHH
Confidence 37889999994 56777777888887776532 4567777766543
No 205
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.08 E-value=0.0022 Score=52.05 Aligned_cols=44 Identities=20% Similarity=0.418 Sum_probs=32.5
Q ss_pred CccEEEEEeCC-CCCCHHHHHHHHHHHHHhcCCceEEEEecCCcc
Q 021660 140 ASVKLVLLDEA-DAMTKDAQFALRRVIEKYTKNTRFALICNQVNK 183 (309)
Q Consensus 140 ~~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 183 (309)
.++.++++||. ..+.......+.+++.+......+|+++.+...
T Consensus 162 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~ 206 (247)
T 2ff7_A 162 NNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLST 206 (247)
T ss_dssp TCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGG
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHH
Confidence 36789999995 456677788888888876545667777776553
No 206
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.08 E-value=0.00045 Score=53.70 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=21.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.|+||+||||+++.+++.+
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999987
No 207
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.08 E-value=0.00062 Score=53.47 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=22.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
..++|.|++|+||||+++.+++.+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 459999999999999999999987
No 208
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=97.07 E-value=0.0035 Score=53.66 Aligned_cols=38 Identities=29% Similarity=0.433 Sum_probs=24.5
Q ss_pred ccEEEEEeCCCCCCHH-HHHHHHHHHHHhcCCceEEEEe
Q 021660 141 SVKLVLLDEADAMTKD-AQFALRRVIEKYTKNTRFALIC 178 (309)
Q Consensus 141 ~~~lliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~ 178 (309)
...++|+||+|.+... ....+..++...+....+++.|
T Consensus 147 ~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~S 185 (367)
T 1hv8_A 147 NVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFS 185 (367)
T ss_dssp SCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEEC
T ss_pred cCCEEEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEe
Confidence 4578999999986432 2345556666555566666655
No 209
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.07 E-value=0.00068 Score=53.56 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHHc
Q 021660 60 DIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLY 99 (309)
Q Consensus 60 ~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (309)
+.++.+...+... +...+.|.||+|+||||+++.++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3444555554432 222389999999999999999999985
No 210
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.07 E-value=0.00061 Score=51.93 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=22.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
..++|+|++|+||||+++.+++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999987
No 211
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.05 E-value=0.0058 Score=49.79 Aligned_cols=44 Identities=25% Similarity=0.335 Sum_probs=32.1
Q ss_pred CccEEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CceEEEEecCCcc
Q 021660 140 ASVKLVLLDEA-DAMTKDAQFALRRVIEKYTK--NTRFALICNQVNK 183 (309)
Q Consensus 140 ~~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~--~~~~i~~~~~~~~ 183 (309)
.++.++++||. ..+.+.....+.+++.+... ...+|+++.+...
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~ 191 (253)
T 2nq2_C 145 SECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ 191 (253)
T ss_dssp TTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 37889999995 45778888888888887643 4567777765543
No 212
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.04 E-value=0.00078 Score=52.92 Aligned_cols=43 Identities=19% Similarity=0.138 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhcCC---CCeEEEECCCCCcHHHHHHHHHHHHccCc
Q 021660 60 DIVDTIDRLTSENR---LPHLLLYGPPGTGKTSTILAVARKLYGAQ 102 (309)
Q Consensus 60 ~~~~~l~~~~~~~~---~~~~ll~G~~G~GKT~l~~~l~~~~~~~~ 102 (309)
..++.+...+.... ...+.|.|++|+||||+++.++..+...+
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~ 50 (201)
T 1rz3_A 5 DRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQG 50 (201)
T ss_dssp HHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 44555555554322 22389999999999999999999874333
No 213
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.04 E-value=0.0038 Score=46.94 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+++.|++|+|||+++..+...-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999998764
No 214
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.03 E-value=0.00077 Score=52.86 Aligned_cols=23 Identities=48% Similarity=0.898 Sum_probs=21.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|+|+||+||||+++.+++.+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999999999999987
No 215
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.03 E-value=0.00087 Score=57.27 Aligned_cols=44 Identities=23% Similarity=0.303 Sum_probs=31.9
Q ss_pred CccEEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CceEEEEecCCcc
Q 021660 140 ASVKLVLLDEA-DAMTKDAQFALRRVIEKYTK--NTRFALICNQVNK 183 (309)
Q Consensus 140 ~~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~--~~~~i~~~~~~~~ 183 (309)
.++.++++||. ..|.......+...+.+... ...+|++|++...
T Consensus 144 ~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~ 190 (348)
T 3d31_A 144 TNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTE 190 (348)
T ss_dssp SCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 37889999994 56777778888888876532 5567777776543
No 216
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.03 E-value=0.00062 Score=51.74 Aligned_cols=37 Identities=11% Similarity=0.046 Sum_probs=29.3
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEE
Q 021660 74 LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (309)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 110 (309)
++.+.|.|++|+||||++..++..+...+..+.++..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~ 40 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH 40 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEe
Confidence 4568999999999999999999998665555544443
No 217
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.02 E-value=0.00063 Score=52.96 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=22.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
..++|.|++|+||||+++.+++.+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 459999999999999999999987
No 218
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.01 E-value=0.0053 Score=46.51 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+++.|++|+|||+++..+...-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 39999999999999999997653
No 219
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.01 E-value=0.00063 Score=53.39 Aligned_cols=27 Identities=26% Similarity=0.408 Sum_probs=23.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHc
Q 021660 73 RLPHLLLYGPPGTGKTSTILAVARKLY 99 (309)
Q Consensus 73 ~~~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (309)
+...+.|.||+|+||||+++.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 334599999999999999999999985
No 220
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=97.00 E-value=0.005 Score=53.26 Aligned_cols=38 Identities=32% Similarity=0.377 Sum_probs=24.0
Q ss_pred ccEEEEEeCCCCCCH--HHHHHHHHHHHHhcCCceEEEEe
Q 021660 141 SVKLVLLDEADAMTK--DAQFALRRVIEKYTKNTRFALIC 178 (309)
Q Consensus 141 ~~~lliiDe~~~l~~--~~~~~l~~~l~~~~~~~~~i~~~ 178 (309)
+..+||+||+|.+.. .....+..+....+....+++.|
T Consensus 145 ~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 184 (395)
T 3pey_A 145 KIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFS 184 (395)
T ss_dssp TCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEE
T ss_pred cCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEE
Confidence 457999999998754 22344455555555556666655
No 221
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.99 E-value=0.00062 Score=59.77 Aligned_cols=91 Identities=18% Similarity=0.170 Sum_probs=50.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhh-c-ccc--------ccCCC----Ccc
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAS-T-QSF--------SFGVK----ASV 142 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~--------~~~~~----~~~ 142 (309)
.++.|+||+|||+++..++.. .....+.++. .....+++.+..... . ... .+... ...
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~~-------~~~lVlTpT~-~aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~~~~~~~~~~~ 235 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVNF-------EEDLILVPGR-QAAEMIRRRANASGIIVATKDNVRTVDSFLMNYGKGARCQF 235 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCCT-------TTCEEEESCH-HHHHHHHHHHTTTSCCCCCTTTEEEHHHHHHTTTSSCCCCC
T ss_pred EEEEcCCCCCHHHHHHHHhcc-------CCeEEEeCCH-HHHHHHHHHhhhcCccccccceEEEeHHhhcCCCCCCCCcC
Confidence 799999999999999877542 1122223332 344455544432100 0 000 00010 025
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021660 143 KLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (309)
Q Consensus 143 ~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~ 179 (309)
.+|||||+..+.......++.++ + ...+|+++.
T Consensus 236 d~liiDE~sm~~~~~l~~l~~~~---~-~~~vilvGD 268 (446)
T 3vkw_A 236 KRLFIDEGLMLHTGCVNFLVEMS---L-CDIAYVYGD 268 (446)
T ss_dssp SEEEEETGGGSCHHHHHHHHHHT---T-CSEEEEEEC
T ss_pred CEEEEeCcccCCHHHHHHHHHhC---C-CCEEEEecC
Confidence 79999999988766655554433 2 367777774
No 222
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.99 E-value=0.001 Score=58.78 Aligned_cols=37 Identities=24% Similarity=0.402 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHc
Q 021660 60 DIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99 (309)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (309)
..++.+..+.++ ..++|+|++|+|||+|+..++....
T Consensus 140 r~ID~L~pi~kG---q~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 140 KVVDLLAPYIKG---GKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp HHHHHHSCEETT---CEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred hHHHHHhhhccC---CEEEEECCCCCCccHHHHHHHhhhh
Confidence 455555555443 4599999999999999999988763
No 223
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.99 E-value=0.014 Score=52.44 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=28.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEe
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELN 111 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 111 (309)
.++|.|++|+||||++..++..+...+..+.++..+
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D 138 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICAD 138 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 389999999999999999998886555555555443
No 224
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.99 E-value=0.007 Score=48.03 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
++|.|.+|+|||+|+..+...-
T Consensus 16 ivlvGd~~VGKTsLi~r~~~~~ 37 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMYDS 37 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCcCHHHHHHHHHhCC
Confidence 9999999999999999987653
No 225
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.98 E-value=0.0034 Score=53.14 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=20.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
++|+|+||+|||+++..++...
T Consensus 101 ~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 101 TEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999864
No 226
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.98 E-value=0.0031 Score=52.71 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=28.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHcc-CcccccEEEEec
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYG-AQYHNMILELNA 112 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~-~~~~~~~~~~~~ 112 (309)
.+.|.||+|+||||++..++..+.. .|..+.++..+.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 4899999999999999999998863 555555554443
No 227
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.98 E-value=0.00049 Score=54.20 Aligned_cols=24 Identities=38% Similarity=0.700 Sum_probs=21.9
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
..++|.||+|+||||+++.++..+
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 349999999999999999999986
No 228
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.97 E-value=0.00089 Score=53.91 Aligned_cols=25 Identities=32% Similarity=0.592 Sum_probs=22.8
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Q 021660 74 LPHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
+..++|.|++|+||||+++.+++.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3459999999999999999999997
No 229
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=96.97 E-value=0.0044 Score=51.89 Aligned_cols=38 Identities=29% Similarity=0.385 Sum_probs=23.6
Q ss_pred ccEEEEEeCCCCCCH--HHHHHHHHHHHHhcCCceEEEEe
Q 021660 141 SVKLVLLDEADAMTK--DAQFALRRVIEKYTKNTRFALIC 178 (309)
Q Consensus 141 ~~~lliiDe~~~l~~--~~~~~l~~~l~~~~~~~~~i~~~ 178 (309)
.-++|||||+|.+.. .....+..++...+....+++.+
T Consensus 235 ~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~S 274 (300)
T 3fmo_B 235 KIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFS 274 (300)
T ss_dssp GCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEE
T ss_pred hceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEe
Confidence 456899999998764 23344555555555556566554
No 230
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.96 E-value=0.00066 Score=52.43 Aligned_cols=23 Identities=35% Similarity=0.759 Sum_probs=21.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.|++|+||||+++.+++.+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 231
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=96.96 E-value=0.0028 Score=51.03 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=24.5
Q ss_pred ccEEEEEeCCCCCCHH-HHHHHHHHHHHhcCCceEEEEec
Q 021660 141 SVKLVLLDEADAMTKD-AQFALRRVIEKYTKNTRFALICN 179 (309)
Q Consensus 141 ~~~lliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~ 179 (309)
.-.+||+||+|.+... ....+..++...+....+++.|.
T Consensus 173 ~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SA 212 (237)
T 3bor_A 173 WIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSA 212 (237)
T ss_dssp TCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECS
T ss_pred cCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEE
Confidence 3578999999976432 23455666666655666655553
No 232
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.96 E-value=0.00065 Score=54.05 Aligned_cols=25 Identities=28% Similarity=0.551 Sum_probs=22.8
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Q 021660 74 LPHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
+..++|.|+||+||||+++.+++.+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3459999999999999999999998
No 233
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.96 E-value=0.0028 Score=49.71 Aligned_cols=41 Identities=12% Similarity=0.145 Sum_probs=21.4
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHH
Q 021660 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
++...+.+.+.....+.-.+++.|++|+|||+++..+....
T Consensus 14 ~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 14 LVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp ----------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 44455555555444444459999999999999999888653
No 234
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.94 E-value=0.008 Score=46.37 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.|++|+|||+|+..+...-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 39999999999999999998765
No 235
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.94 E-value=0.00069 Score=53.50 Aligned_cols=31 Identities=13% Similarity=0.163 Sum_probs=25.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccCcccc
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHN 105 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~ 105 (309)
..++|+|++|+||||+++.+++.+...+...
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 3499999999999999999999885444433
No 236
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.94 E-value=0.00063 Score=55.58 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.|+||+||||+++.++..+
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 38999999999999999999987
No 237
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.94 E-value=0.0052 Score=45.79 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+++.|++|+|||+++..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38999999999999999998664
No 238
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.93 E-value=0.00073 Score=53.45 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=24.9
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccCccc
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYH 104 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~ 104 (309)
..++|+|++|+||||+++.+++.+...+..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~ 39 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAAGHR 39 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcCCc
Confidence 459999999999999999999988544433
No 239
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.93 E-value=0.00048 Score=53.06 Aligned_cols=24 Identities=38% Similarity=0.646 Sum_probs=18.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
..++|.|++|+||||+++.+++.+
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 458999999999999999999987
No 240
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.92 E-value=0.0007 Score=54.25 Aligned_cols=24 Identities=21% Similarity=0.499 Sum_probs=22.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
..++|.|++|+||||+++.+++.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 459999999999999999999987
No 241
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.92 E-value=0.0051 Score=48.15 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=24.4
Q ss_pred ccEEEEEeCCCCCCHH-HHHHHHHHHHHhcCCceEEEEec
Q 021660 141 SVKLVLLDEADAMTKD-AQFALRRVIEKYTKNTRFALICN 179 (309)
Q Consensus 141 ~~~lliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~ 179 (309)
.-.+||+||+|.+... ....+..++...+....+++.|.
T Consensus 144 ~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 183 (207)
T 2gxq_A 144 RVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSA 183 (207)
T ss_dssp TCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECS
T ss_pred hceEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEE
Confidence 4578999999976532 23445556665555555555553
No 242
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.92 E-value=0.0039 Score=53.42 Aligned_cols=44 Identities=16% Similarity=0.288 Sum_probs=32.7
Q ss_pred CccEEEEEeCC-CCCCHHHHHHHHHHHHHhc--CCceEEEEecCCcc
Q 021660 140 ASVKLVLLDEA-DAMTKDAQFALRRVIEKYT--KNTRFALICNQVNK 183 (309)
Q Consensus 140 ~~~~lliiDe~-~~l~~~~~~~l~~~l~~~~--~~~~~i~~~~~~~~ 183 (309)
.++.+|++||. ..|.+.....+++++.+.. ....+|++|.+...
T Consensus 180 ~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~ 226 (366)
T 3tui_C 180 SNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDV 226 (366)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHH
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 37889999996 4567788888888888764 25667777776543
No 243
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.92 E-value=0.00057 Score=54.58 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=22.9
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Q 021660 74 LPHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
+..++|.|+||+||||+++.+++.+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3459999999999999999999998
No 244
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.92 E-value=0.027 Score=43.27 Aligned_cols=24 Identities=29% Similarity=0.606 Sum_probs=21.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
..+++.|++|+|||+++..+...-
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 359999999999999999998753
No 245
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.91 E-value=0.00058 Score=52.86 Aligned_cols=22 Identities=27% Similarity=0.623 Sum_probs=20.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
++|+||+|+||||+++.+.+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999998885
No 246
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.90 E-value=0.00086 Score=53.27 Aligned_cols=23 Identities=26% Similarity=0.577 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.||||+||+|.++.+++.+
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 38889999999999999999987
No 247
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.90 E-value=0.0077 Score=44.98 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+++.|++|+|||+++..+...-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38999999999999999998653
No 248
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.89 E-value=0.0009 Score=51.98 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.|+||+||||+++.+++.+
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 249
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.89 E-value=0.00078 Score=51.90 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+.|.||+|+||||+++.++...
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999999875
No 250
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=96.88 E-value=0.0081 Score=47.59 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=26.1
Q ss_pred ccEEEEEeCCCCCCHH-HHHHHHHHHHHhcCCceEEEEe-cCCcc
Q 021660 141 SVKLVLLDEADAMTKD-AQFALRRVIEKYTKNTRFALIC-NQVNK 183 (309)
Q Consensus 141 ~~~lliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~-~~~~~ 183 (309)
.-.++||||+|.+... ....+..++...+....+++.| +....
T Consensus 150 ~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~ 194 (219)
T 1q0u_A 150 TAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEK 194 (219)
T ss_dssp GCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGG
T ss_pred cceEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHH
Confidence 4568999999987532 2345566666665555555544 44333
No 251
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.88 E-value=0.00092 Score=52.15 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=22.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
..++|.|++|+||||+++.+++.+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 459999999999999999999987
No 252
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.87 E-value=0.0067 Score=45.98 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+++.|++|+|||+++..+...-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 39999999999999999998764
No 253
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=96.87 E-value=0.0093 Score=49.33 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=27.2
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHH
Q 021660 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
++.-.+.+..++.+ ...++.+|+|+|||..+..++...
T Consensus 115 ~~~Q~~ai~~~l~~---~~~ll~~~tGsGKT~~~~~~~~~~ 152 (282)
T 1rif_A 115 HWYQKDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYY 152 (282)
T ss_dssp CHHHHHHHHHHHHH---SEEEECCCTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhc---CCeEEEcCCCCCcHHHHHHHHHHH
Confidence 44455555555554 346889999999999987777664
No 254
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.87 E-value=0.0009 Score=52.51 Aligned_cols=24 Identities=21% Similarity=0.498 Sum_probs=21.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
..++|+|++|+||||+++.+++.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 348999999999999999999886
No 255
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.86 E-value=0.001 Score=50.36 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=21.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|+|++|+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 256
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.85 E-value=0.00076 Score=51.55 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.|++|+||||+++.++..+
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHhh
Confidence 48999999999999999999886
No 257
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.85 E-value=0.13 Score=41.39 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (309)
.++|.|.+|+|||+++..+...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 3999999999999999998754
No 258
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.85 E-value=0.0015 Score=57.60 Aligned_cols=35 Identities=29% Similarity=0.402 Sum_probs=27.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccCcccccEEEE
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 110 (309)
.++|+|++|+||||++..++..+...+..+.++..
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 49999999999999999999988654444444433
No 259
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.84 E-value=0.00072 Score=53.35 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=22.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHcc
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYG 100 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (309)
.++|.|+||+||||+++.+++.+..
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4899999999999999999999844
No 260
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.84 E-value=0.01 Score=45.76 Aligned_cols=23 Identities=39% Similarity=0.616 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.|++|+|||+|+..+...-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 39999999999999999998754
No 261
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.83 E-value=0.0036 Score=63.77 Aligned_cols=29 Identities=28% Similarity=0.374 Sum_probs=23.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccCcc
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGAQY 103 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~ 103 (309)
..++|+||||+|||+++..++......+.
T Consensus 35 ~i~lI~G~pGsGKT~LAlqla~~~~~~G~ 63 (1706)
T 3cmw_A 35 RIVEIYGPESSGKTTLTLQVIAAAQREGK 63 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 34999999999999999999887644443
No 262
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.83 E-value=0.0069 Score=45.98 Aligned_cols=22 Identities=41% Similarity=0.682 Sum_probs=19.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (309)
.+++.|++|+|||+|+..+...
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3999999999999999988654
No 263
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.83 E-value=0.0028 Score=55.62 Aligned_cols=50 Identities=26% Similarity=0.403 Sum_probs=34.2
Q ss_pred CccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccC
Q 021660 51 SLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101 (309)
Q Consensus 51 ~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~ 101 (309)
.+.++--.......+...+. .+...++|.||+|+||||+++.++..+...
T Consensus 145 ~l~~Lg~~~~~~~~L~~l~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 145 DLHSLGMTAHNHDNFRRLIK-RPHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp CGGGSCCCHHHHHHHHHHHT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred CHHHcCCCHHHHHHHHHHHH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 44444334444445555543 333448999999999999999999998544
No 264
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.81 E-value=0.0016 Score=49.81 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=29.0
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEe
Q 021660 74 LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELN 111 (309)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 111 (309)
.+.+.|.|++|+||||++..++..+...+.....+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~ 43 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT 43 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeC
Confidence 35589999999999999999999876555544444443
No 265
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.81 E-value=0.011 Score=56.27 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=18.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~ 97 (309)
..+++.||+|+|||+++-.++..
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999977766544
No 266
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=96.81 E-value=0.0097 Score=51.83 Aligned_cols=38 Identities=29% Similarity=0.385 Sum_probs=23.6
Q ss_pred ccEEEEEeCCCCCCH--HHHHHHHHHHHHhcCCceEEEEe
Q 021660 141 SVKLVLLDEADAMTK--DAQFALRRVIEKYTKNTRFALIC 178 (309)
Q Consensus 141 ~~~lliiDe~~~l~~--~~~~~l~~~l~~~~~~~~~i~~~ 178 (309)
.-.+||+||+|.+.. .....+..++...+....+++.|
T Consensus 168 ~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 207 (412)
T 3fht_A 168 KIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFS 207 (412)
T ss_dssp GCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEE
T ss_pred hCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEE
Confidence 467899999997642 23344445555555566666655
No 267
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.81 E-value=0.01 Score=44.00 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~ 97 (309)
+.+++.|++|+|||+++..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999865
No 268
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.80 E-value=0.00081 Score=52.68 Aligned_cols=23 Identities=26% Similarity=0.660 Sum_probs=21.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.|++|+||||+++.+++.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 47899999999999999999998
No 269
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.80 E-value=0.00096 Score=52.69 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
..++|.||+|+||||+++.++..+
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 348999999999999999999886
No 270
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.79 E-value=0.012 Score=45.86 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.|++|+|||+|+..+...-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 39999999999999999987653
No 271
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=96.79 E-value=0.0056 Score=49.71 Aligned_cols=38 Identities=16% Similarity=0.356 Sum_probs=23.2
Q ss_pred ccEEEEEeCCCCCCHH-HHHHHHHHHHHhcCCceEEEEe
Q 021660 141 SVKLVLLDEADAMTKD-AQFALRRVIEKYTKNTRFALIC 178 (309)
Q Consensus 141 ~~~lliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~ 178 (309)
.-.+||+||+|.+... ....+..++...+....+++.|
T Consensus 186 ~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~S 224 (249)
T 3ber_A 186 ALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFS 224 (249)
T ss_dssp TCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEE
T ss_pred ccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEe
Confidence 3568999999976532 2344556666555455555544
No 272
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.79 E-value=0.0054 Score=47.20 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.|++|+|||+|+..+...-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 39999999999999999998653
No 273
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.79 E-value=0.0082 Score=44.97 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+++.|++|+|||+++..+...-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38999999999999999998654
No 274
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.78 E-value=0.011 Score=45.07 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+++.|++|+|||+|+..+...-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 39999999999999999998653
No 275
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.77 E-value=0.0044 Score=52.66 Aligned_cols=32 Identities=16% Similarity=0.283 Sum_probs=25.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCcccccEE
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMIL 108 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~ 108 (309)
++|.|+||+|||+++..++..+...+..+.++
T Consensus 49 iiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~f 80 (338)
T 4a1f_A 49 VIIGARPSMGKTSLMMNMVLSALNDDRGVAVF 80 (338)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 99999999999999999988875444333333
No 276
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.77 E-value=0.0011 Score=51.41 Aligned_cols=23 Identities=26% Similarity=0.613 Sum_probs=21.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|+|++|+||||+++.+++.+
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 277
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.76 E-value=0.013 Score=44.98 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
+++.|++|+|||+|+..+...-
T Consensus 24 i~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 24 LAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCcHHHHHHHHHhCC
Confidence 9999999999999999988654
No 278
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.76 E-value=0.00065 Score=52.70 Aligned_cols=22 Identities=45% Similarity=0.644 Sum_probs=20.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (309)
.++|.||+|+||||+++.++..
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999876
No 279
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.76 E-value=0.0087 Score=44.83 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~ 97 (309)
+++.|++|+|||+++..+...
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999864
No 280
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.75 E-value=0.0011 Score=53.79 Aligned_cols=25 Identities=32% Similarity=0.697 Sum_probs=22.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Q 021660 74 LPHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
+..++|.||+|+||||+++.+++.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3459999999999999999999887
No 281
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.75 E-value=0.01 Score=49.55 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=25.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCcccccEEE
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILE 109 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~ 109 (309)
+.++|++|+||||++..++..+...+..+.++.
T Consensus 101 i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 101 WFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp EEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 788899999999999999998865544444433
No 282
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.74 E-value=0.0021 Score=51.18 Aligned_cols=41 Identities=22% Similarity=0.193 Sum_probs=27.8
Q ss_pred HHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHcc-CcccccE
Q 021660 67 RLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG-AQYHNMI 107 (309)
Q Consensus 67 ~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~-~~~~~~~ 107 (309)
.-....+...++|.|++|+||||+++.+++.+.. .+..+.+
T Consensus 14 ~~~~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 14 AQTQGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp -----CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 3334444445899999999999999999999865 4544433
No 283
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.74 E-value=0.0065 Score=47.12 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+++.|++|+|||+|+..+...-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 39999999999999999998763
No 284
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.73 E-value=0.0078 Score=46.52 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~ 97 (309)
+++.|++|+|||+|+..+...
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 999999999999999998754
No 285
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.73 E-value=0.0014 Score=52.04 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=34.6
Q ss_pred ccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHc
Q 021660 56 AAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99 (309)
Q Consensus 56 ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (309)
-.+.+....+.........+.++|.|++|+||||++..++..+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 12 AENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred hhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34556666677666655666799999999999999999998873
No 286
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.73 E-value=0.0037 Score=46.92 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+++.|++|+|||+++..+....
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999998754
No 287
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.72 E-value=0.011 Score=44.08 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=20.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+++.|++|+|||+++..+...-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38999999999999999998753
No 288
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.72 E-value=0.0012 Score=52.25 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.|+||+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 289
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.71 E-value=0.0015 Score=52.26 Aligned_cols=23 Identities=35% Similarity=0.648 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.|+||+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37999999999999999999987
No 290
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.71 E-value=0.008 Score=45.70 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
+++.|++|+|||+++..+...-
T Consensus 15 i~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 9999999999999999998653
No 291
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.70 E-value=0.012 Score=44.21 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=18.7
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVAR 96 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~ 96 (309)
.+++.|++|+|||+|+..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 389999999999999999863
No 292
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=96.70 E-value=0.0093 Score=47.68 Aligned_cols=38 Identities=21% Similarity=0.391 Sum_probs=23.5
Q ss_pred ccEEEEEeCCCCCCHH--HHHHHHHHHHHhcCCceEEEEe
Q 021660 141 SVKLVLLDEADAMTKD--AQFALRRVIEKYTKNTRFALIC 178 (309)
Q Consensus 141 ~~~lliiDe~~~l~~~--~~~~l~~~l~~~~~~~~~i~~~ 178 (309)
.-.+||+||+|.+... ....+..++...+....+++.|
T Consensus 166 ~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lS 205 (230)
T 2oxc_A 166 SIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVS 205 (230)
T ss_dssp GCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEE
T ss_pred cCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEE
Confidence 3458999999987432 3445555666665555555544
No 293
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.69 E-value=0.0052 Score=47.44 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
++|.|++|+|||+|++.+....
T Consensus 17 i~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 9999999999999998776654
No 294
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.69 E-value=0.0013 Score=51.23 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
..++|.||+|+||||+++.++...
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECcCCCCHHHHHHHHHhhC
Confidence 348999999999999999999875
No 295
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.68 E-value=0.0027 Score=52.91 Aligned_cols=24 Identities=29% Similarity=0.606 Sum_probs=22.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHHcc
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYG 100 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~ 100 (309)
+.|.|++|+||||+++.++..+..
T Consensus 34 i~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhhh
Confidence 899999999999999999998853
No 296
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.68 E-value=0.0031 Score=50.18 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHcc
Q 021660 59 RDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100 (309)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (309)
+.....+.........+.++|.|.+|+|||+++..++.....
T Consensus 23 ~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 444556666665555566999999999999999999988743
No 297
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.66 E-value=0.0012 Score=51.32 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=22.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHcc
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYG 100 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (309)
.++|+|++|+||||+++.+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999998743
No 298
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.66 E-value=0.0011 Score=52.06 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=22.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
..++|.|++|+||||+++.+++.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 459999999999999999999986
No 299
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.66 E-value=0.0014 Score=51.35 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=21.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
..+.|.||+|+||||+++.++...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 348999999999999999999875
No 300
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=96.65 E-value=0.007 Score=54.66 Aligned_cols=38 Identities=29% Similarity=0.381 Sum_probs=24.4
Q ss_pred ccEEEEEeCCCCCCH--HHHHHHHHHHHHhcCCceEEEEe
Q 021660 141 SVKLVLLDEADAMTK--DAQFALRRVIEKYTKNTRFALIC 178 (309)
Q Consensus 141 ~~~lliiDe~~~l~~--~~~~~l~~~l~~~~~~~~~i~~~ 178 (309)
...+|||||+|.+.. .....+..++...+....+|+.|
T Consensus 259 ~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lS 298 (508)
T 3fho_A 259 DIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFS 298 (508)
T ss_dssp TCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEe
Confidence 467999999998764 23344555555555566666555
No 301
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.65 E-value=0.011 Score=46.04 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=20.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
..++|.|++|+|||+|+..+...-
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 349999999999999999997653
No 302
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.64 E-value=0.0021 Score=50.77 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=23.0
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHHc
Q 021660 74 LPHLLLYGPPGTGKTSTILAVARKLY 99 (309)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (309)
...++|.|++|+||||+++.++..+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34589999999999999999999874
No 303
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.64 E-value=0.0093 Score=44.77 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (309)
.+++.|++|+|||+++..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999998764
No 304
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.63 E-value=0.071 Score=40.77 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~ 97 (309)
..+++.|++|+|||+++..+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45999999999999999998765
No 305
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.63 E-value=0.0018 Score=51.72 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=22.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
..+.|.||+|+||||+++.+++.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999987
No 306
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.63 E-value=0.0028 Score=51.48 Aligned_cols=40 Identities=25% Similarity=0.253 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHhc-CCCCeEEEECCCCCcHHHHHHHHHHHH
Q 021660 59 RDIVDTIDRLTSE-NRLPHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 59 ~~~~~~l~~~~~~-~~~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
..+++.+.-.+.. .....++|.|++|+||||+++.++..+
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3455544443443 012459999999999999999999988
No 307
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.62 E-value=0.0011 Score=51.27 Aligned_cols=22 Identities=36% Similarity=0.688 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
++|.||+|+||||+++.++...
T Consensus 5 i~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCcHHHHHHHHhccc
Confidence 7899999999999999998753
No 308
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.62 E-value=0.0014 Score=51.29 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+.|.||+|+||||+++.++...
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999999876
No 309
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.62 E-value=0.0035 Score=53.88 Aligned_cols=39 Identities=23% Similarity=0.357 Sum_probs=30.5
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEec
Q 021660 74 LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (309)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 112 (309)
...+.|+|+||+||||++..++..+...+..+.++..+.
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp 117 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDP 117 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCC
Confidence 344999999999999999999999866666665555553
No 310
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.62 E-value=0.0015 Score=51.24 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
..+.|.||+|+||||+++.++..+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 348999999999999999998876
No 311
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.61 E-value=0.00097 Score=56.38 Aligned_cols=23 Identities=35% Similarity=0.587 Sum_probs=21.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.||+|+|||+++..+++.+
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHC
Confidence 59999999999999999999987
No 312
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.60 E-value=0.011 Score=45.53 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+++.|++|+|||+|+..+...-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 39999999999999999998654
No 313
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.60 E-value=0.003 Score=48.49 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
+++.|++|+|||+|+..+...-
T Consensus 10 i~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999998753
No 314
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.60 E-value=0.0035 Score=50.45 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=25.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccCccc
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGAQYH 104 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~ 104 (309)
.++|.|++|+||||+++.++..+...+..
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 48999999999999999999998665554
No 315
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.60 E-value=0.0092 Score=54.89 Aligned_cols=43 Identities=16% Similarity=0.309 Sum_probs=33.1
Q ss_pred ccEEEEEeCCC-CCCHHHHHHHHHHHHHhcCCceEEEEecCCcc
Q 021660 141 SVKLVLLDEAD-AMTKDAQFALRRVIEKYTKNTRFALICNQVNK 183 (309)
Q Consensus 141 ~~~lliiDe~~-~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 183 (309)
++.++++||.- .+.+.....+.+.+.+...+..+|+++++...
T Consensus 497 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~ 540 (587)
T 3qf4_A 497 KPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPT 540 (587)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHH
Confidence 67899999964 56677788888888877666777788876643
No 316
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.59 E-value=0.012 Score=45.02 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+++.|++|+|||+|+..+...-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 38999999999999999998654
No 317
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.58 E-value=0.0056 Score=56.21 Aligned_cols=44 Identities=16% Similarity=0.404 Sum_probs=33.1
Q ss_pred ccEEEEEeCCC-CCCHHHHHHHHHHHHHhcCCceEEEEecCCccc
Q 021660 141 SVKLVLLDEAD-AMTKDAQFALRRVIEKYTKNTRFALICNQVNKI 184 (309)
Q Consensus 141 ~~~lliiDe~~-~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l 184 (309)
++.++++||.- .+.+.....+.+.+.....+..+|+++++...+
T Consensus 495 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~ 539 (578)
T 4a82_A 495 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTI 539 (578)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGT
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 67899999964 556777788888888776666777788776543
No 318
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.58 E-value=0.017 Score=43.77 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+++.|++|+|||+++..+...-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 49999999999999999987754
No 319
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.58 E-value=0.0012 Score=51.05 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHc
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLY 99 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~ 99 (309)
.+.|.||+|+||||+++.++..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 378999999999999999998863
No 320
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.57 E-value=0.0043 Score=49.03 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.|++|+|||+|+..+...-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 39999999999999999987753
No 321
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.57 E-value=0.0025 Score=51.10 Aligned_cols=24 Identities=42% Similarity=0.576 Sum_probs=22.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
..+.|.||+|+||||+++.+++.+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 359999999999999999999987
No 322
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.56 E-value=0.0044 Score=49.07 Aligned_cols=30 Identities=27% Similarity=0.356 Sum_probs=25.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccCcccc
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHN 105 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~ 105 (309)
.++|.|++|+||||.++.+++.+...+...
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v 37 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRERGIEV 37 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCc
Confidence 389999999999999999999996655543
No 323
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.56 E-value=0.0069 Score=46.58 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+++.|++|+|||+++..+....
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 39999999999999999998654
No 324
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.56 E-value=0.005 Score=52.92 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=29.5
Q ss_pred HHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHccCccc
Q 021660 64 TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYH 104 (309)
Q Consensus 64 ~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~ 104 (309)
.+.-.+.-++...+.|.||+|+|||+++..+++.+...+..
T Consensus 164 aID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~ 204 (422)
T 3ice_A 164 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPD 204 (422)
T ss_dssp HHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTT
T ss_pred eeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCC
Confidence 33333444455669999999999999999999887543333
No 325
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.55 E-value=0.014 Score=44.16 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+++.|++|+|||+|+..+....
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 39999999999999999998763
No 326
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.55 E-value=0.011 Score=46.04 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.|++|+|||+|+..+...-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 39999999999999999987643
No 327
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=96.55 E-value=0.017 Score=51.70 Aligned_cols=38 Identities=29% Similarity=0.385 Sum_probs=23.6
Q ss_pred ccEEEEEeCCCCCCH--HHHHHHHHHHHHhcCCceEEEEe
Q 021660 141 SVKLVLLDEADAMTK--DAQFALRRVIEKYTKNTRFALIC 178 (309)
Q Consensus 141 ~~~lliiDe~~~l~~--~~~~~l~~~l~~~~~~~~~i~~~ 178 (309)
.-.+|||||+|.+.. .....+..++...+....+|+.+
T Consensus 235 ~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~S 274 (479)
T 3fmp_B 235 KIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFS 274 (479)
T ss_dssp GCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEE
T ss_pred cCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEe
Confidence 467899999997642 23344445555555556666655
No 328
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.55 E-value=0.01 Score=45.50 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=24.3
Q ss_pred HHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHH
Q 021660 64 TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 64 ~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~ 97 (309)
.+.+ +...+...+++.|++|+|||+++..+...
T Consensus 7 ~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 7 RIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 3444 33344445999999999999999998853
No 329
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.54 E-value=0.028 Score=44.37 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=20.9
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Q 021660 74 LPHLLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~ 97 (309)
...++|.|++|+|||+|+..+...
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 345999999999999999998765
No 330
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.53 E-value=0.0066 Score=55.07 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccC
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGA 101 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~ 101 (309)
.++|.||+|+|||||++.++......
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g~~~~~ 308 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVENACAN 308 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 48999999999999999999887543
No 331
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.52 E-value=0.01 Score=46.24 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.|++|+|||+|+..+...-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 39999999999999999987653
No 332
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.50 E-value=0.0044 Score=46.44 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=18.7
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVAR 96 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~ 96 (309)
.+++.|++|+|||+|++.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999998853
No 333
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.50 E-value=0.015 Score=53.45 Aligned_cols=43 Identities=21% Similarity=0.454 Sum_probs=32.1
Q ss_pred CccEEEEEeCCC-CCCHHHHHHHHHHHHHhcCCceEEEEecCCc
Q 021660 140 ASVKLVLLDEAD-AMTKDAQFALRRVIEKYTKNTRFALICNQVN 182 (309)
Q Consensus 140 ~~~~lliiDe~~-~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 182 (309)
.++.++++||.- .+.+.....+.+.+.+...+..+|+++++..
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 540 (582)
T 3b5x_A 497 RDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLS 540 (582)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 378899999964 5667777888888887655666777777654
No 334
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.50 E-value=0.0054 Score=48.53 Aligned_cols=29 Identities=24% Similarity=0.271 Sum_probs=25.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccCcc
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGAQY 103 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~ 103 (309)
..++|.|++|+||||.++.+++.+...+.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~ 32 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGI 32 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 34899999999999999999999976654
No 335
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.49 E-value=0.0061 Score=47.45 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
++|.|++|+|||||++.++...
T Consensus 8 v~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 8999999999999999998763
No 336
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.49 E-value=0.0063 Score=54.86 Aligned_cols=40 Identities=15% Similarity=0.157 Sum_probs=31.3
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHc
Q 021660 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99 (309)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (309)
....++.+.-.+..+ .+++|.||+|+||||+++.++..+.
T Consensus 246 ~~~~l~~l~~~v~~g--~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 246 PSGVLAYLWLAIEHK--FSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp CHHHHHHHHHHHHTT--CCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CHHHHHHHHHHHhCC--CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 455666666666665 3499999999999999999988773
No 337
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.49 E-value=0.0019 Score=49.52 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHc
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLY 99 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~ 99 (309)
.++|+|++|+||||+++.++..+.
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999999874
No 338
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=96.48 E-value=0.02 Score=45.52 Aligned_cols=38 Identities=18% Similarity=0.357 Sum_probs=25.3
Q ss_pred ccEEEEEeCCCCCCHHH-HHHHHHHHHHhcCCceEEEEe
Q 021660 141 SVKLVLLDEADAMTKDA-QFALRRVIEKYTKNTRFALIC 178 (309)
Q Consensus 141 ~~~lliiDe~~~l~~~~-~~~l~~~l~~~~~~~~~i~~~ 178 (309)
+-.+|||||+|.+.... ...+..++...+.+..+++.|
T Consensus 167 ~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~S 205 (228)
T 3iuy_A 167 SITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTS 205 (228)
T ss_dssp TCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEE
T ss_pred cceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEE
Confidence 45789999999875432 455666666666566666655
No 339
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.47 E-value=0.0039 Score=48.96 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+++.|++|+|||+|+..+...-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 39999999999999999998764
No 340
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.47 E-value=0.025 Score=49.77 Aligned_cols=37 Identities=19% Similarity=0.351 Sum_probs=29.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccC-cccccEEEEec
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGA-QYHNMILELNA 112 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~-~~~~~~~~~~~ 112 (309)
.+++.|++|+||||++..++..+... +..+.++..+.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 38889999999999999999998766 66655555554
No 341
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.47 E-value=0.013 Score=45.31 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+++.|++|+|||+|+..+...-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 39999999999999999998764
No 342
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=96.47 E-value=0.026 Score=48.69 Aligned_cols=38 Identities=18% Similarity=0.368 Sum_probs=25.3
Q ss_pred ccEEEEEeCCCCCCH--HHHHHHHHHHHHhcCCceEEEEe
Q 021660 141 SVKLVLLDEADAMTK--DAQFALRRVIEKYTKNTRFALIC 178 (309)
Q Consensus 141 ~~~lliiDe~~~l~~--~~~~~l~~~l~~~~~~~~~i~~~ 178 (309)
...+||+||+|.+.. .....+..++...+....+++.|
T Consensus 152 ~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 191 (391)
T 1xti_A 152 HIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFS 191 (391)
T ss_dssp TCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEE
T ss_pred ccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEE
Confidence 456899999998864 44455666666555555555554
No 343
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.46 E-value=0.00068 Score=53.62 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=22.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccC
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGA 101 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~ 101 (309)
++|.|++|+||||+++.+++.+...
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 7899999999999999999998543
No 344
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.46 E-value=0.0055 Score=56.54 Aligned_cols=43 Identities=19% Similarity=0.347 Sum_probs=32.7
Q ss_pred ccEEEEEeCCC-CCCHHHHHHHHHHHHHhcCCceEEEEecCCcc
Q 021660 141 SVKLVLLDEAD-AMTKDAQFALRRVIEKYTKNTRFALICNQVNK 183 (309)
Q Consensus 141 ~~~lliiDe~~-~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 183 (309)
++.++++||.- .+.+.....+.+.+.+...+..+|+++++...
T Consensus 509 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~ 552 (598)
T 3qf4_B 509 NPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNT 552 (598)
T ss_dssp CCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 68899999964 55677777888888876666677888877654
No 345
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.46 E-value=0.056 Score=40.06 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+++.|++|+|||+++..+...-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998654
No 346
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.46 E-value=0.013 Score=44.94 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=20.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.|++|+|||+|+..+...-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 49999999999999999987653
No 347
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.46 E-value=0.013 Score=44.57 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
++|.|++|+|||+|+..+....
T Consensus 21 i~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 8999999999999999998654
No 348
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=96.46 E-value=0.005 Score=47.58 Aligned_cols=44 Identities=11% Similarity=-0.011 Sum_probs=39.7
Q ss_pred CCChHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHhh
Q 021660 264 NPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVT 308 (309)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~ 308 (309)
..-++.++.++++++++|++.++++|.+|+ ..|++|..|.+.|+
T Consensus 33 d~HYd~ISAf~KSiRGSDpDAALywLaRMl-~~GEDp~~IaRRLv 76 (213)
T 3ctd_A 33 QNHFDVISAFIKSIRGSDPDATLYWLANMV-EAGEDPNFIFRRLL 76 (213)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCHHHHHHHHH
Confidence 345778999999999999999999999999 99999999998775
No 349
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=96.44 E-value=0.033 Score=48.31 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=17.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~ 97 (309)
.++++.+|+|+|||..+...+-.
T Consensus 59 ~~~li~a~TGsGKT~~~~~~~~~ 81 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIPTLE 81 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHHHH
Confidence 34999999999999876554443
No 350
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.44 E-value=0.056 Score=45.01 Aligned_cols=36 Identities=25% Similarity=0.281 Sum_probs=27.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEe
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELN 111 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 111 (309)
.+.+.|++|+||||++..++..+...+..+.++..+
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 388899999999999999999886555554444443
No 351
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.44 E-value=0.04 Score=42.32 Aligned_cols=24 Identities=33% Similarity=0.546 Sum_probs=20.9
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Q 021660 74 LPHLLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~ 97 (309)
...+++.|++|+|||+++..+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 355999999999999999998754
No 352
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=96.44 E-value=0.016 Score=46.39 Aligned_cols=38 Identities=26% Similarity=0.376 Sum_probs=24.3
Q ss_pred ccEEEEEeCCCCCCHH-HHHHHHHHHHHhcCCceEEEEe
Q 021660 141 SVKLVLLDEADAMTKD-AQFALRRVIEKYTKNTRFALIC 178 (309)
Q Consensus 141 ~~~lliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~ 178 (309)
.-.+||+||+|.+... ....+..++...+....+++.|
T Consensus 171 ~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~S 209 (236)
T 2pl3_A 171 DLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFS 209 (236)
T ss_dssp TCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEE
T ss_pred cccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEE
Confidence 4568999999977532 2455666666666555555544
No 353
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.44 E-value=0.0021 Score=54.48 Aligned_cols=23 Identities=35% Similarity=0.676 Sum_probs=21.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.||+|+|||+++..+++.+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 48999999999999999999997
No 354
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=96.43 E-value=0.011 Score=48.38 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=24.3
Q ss_pred ccEEEEEeCCCCCCHH-HHHHHHHHHHHhcCCceEEEEe
Q 021660 141 SVKLVLLDEADAMTKD-AQFALRRVIEKYTKNTRFALIC 178 (309)
Q Consensus 141 ~~~lliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~ 178 (309)
+-.+|||||+|.+... ....+..++...+....+++.|
T Consensus 201 ~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~S 239 (262)
T 3ly5_A 201 NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFS 239 (262)
T ss_dssp TCCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEEC
T ss_pred cCCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEE
Confidence 4578999999986543 2445556666666556555544
No 355
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=96.43 E-value=0.027 Score=45.30 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=17.3
Q ss_pred CeEEEECCCCCcHHHHH-HHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTI-LAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~-~~l~~~~ 98 (309)
.++++.+|+|+|||... ..+...+
T Consensus 67 ~~~l~~a~TGsGKT~~~~l~~l~~l 91 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAFSIPILMQL 91 (245)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHHHHHHHHH
Confidence 35999999999999764 3333444
No 356
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.43 E-value=0.017 Score=53.13 Aligned_cols=51 Identities=8% Similarity=0.163 Sum_probs=34.6
Q ss_pred ccEEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CceEEEEecCCcccchhhhcce
Q 021660 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTK-NTRFALICNQVNKIIPALQSRC 192 (309)
Q Consensus 141 ~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~-~~~~i~~~~~~~~l~~~l~~r~ 192 (309)
++.++++||. ..|.......+.+++..... ...+|+++++...+ ..+..|.
T Consensus 239 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~-~~~~drv 291 (608)
T 3j16_B 239 EADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVL-DYLSDFV 291 (608)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHH-HHHCSEE
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-HHhCCEE
Confidence 6789999995 46677788889999987654 34566676655433 2334444
No 357
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.40 E-value=0.0013 Score=51.99 Aligned_cols=42 Identities=36% Similarity=0.568 Sum_probs=29.5
Q ss_pred hcCCCCccccccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHH
Q 021660 46 KYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 46 ~~~p~~~~~~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~ 97 (309)
..+|+++ |+..+++.+ ..+ ..+.|.||.|+|||||++.++..
T Consensus 4 ~i~pk~~----g~~~~l~~i----~~G--e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 4 VIRPKTL----GQKHYVDAI----DTN--TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CCCCCSH----HHHHHHHHH----HHC--SEEEEECCTTSSTTHHHHHHHHH
T ss_pred ccccCCH----hHHHHHHhc----cCC--CEEEEECCCCCCHHHHHHHHhcC
Confidence 4566665 333444443 333 34899999999999999999887
No 358
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.39 E-value=0.0034 Score=52.62 Aligned_cols=29 Identities=31% Similarity=0.387 Sum_probs=24.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccCccc
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGAQYH 104 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~ 104 (309)
.+.|.||+|+||||++..++..+...+..
T Consensus 104 vi~lvG~nGsGKTTll~~Lagll~~~~g~ 132 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYYQNLGKK 132 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCE
Confidence 48999999999999999999988654433
No 359
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.39 E-value=0.057 Score=44.23 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+++.|++|+|||+++..+...-
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 49999999999999999988653
No 360
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.38 E-value=0.014 Score=44.83 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
++|.|++|+|||+|+..+....
T Consensus 23 i~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEECCTTSCHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 9999999999999998887754
No 361
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=96.38 E-value=0.013 Score=51.01 Aligned_cols=38 Identities=29% Similarity=0.448 Sum_probs=25.4
Q ss_pred ccEEEEEeCCCCCCHH-HHHHHHHHHHHhcCCceEEEEe
Q 021660 141 SVKLVLLDEADAMTKD-AQFALRRVIEKYTKNTRFALIC 178 (309)
Q Consensus 141 ~~~lliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~ 178 (309)
.-.+||+||+|.+... ....+..++...+....+|+.|
T Consensus 183 ~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~S 221 (414)
T 3eiq_A 183 YIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLS 221 (414)
T ss_dssp TCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEEC
T ss_pred cCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEE
Confidence 3579999999986533 2355666666666666666665
No 362
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.38 E-value=0.004 Score=47.65 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
+++.|++|+|||+|+..+....
T Consensus 8 i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 8 CVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 8999999999999999987653
No 363
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.38 E-value=0.0021 Score=50.42 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+.|+|++|+||||+++.++. +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 489999999999999999998 6
No 364
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.37 E-value=0.022 Score=43.99 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+++.|++|+|||+|+..+...-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 49999999999999999998753
No 365
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.37 E-value=0.0065 Score=51.47 Aligned_cols=34 Identities=29% Similarity=0.410 Sum_probs=27.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCcccccEEEE
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 110 (309)
+.|.||+|+||||++..++..+...+..+.+...
T Consensus 132 i~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~ 165 (328)
T 3e70_C 132 IMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAAS 165 (328)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEee
Confidence 8999999999999999999988655554444433
No 366
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.37 E-value=0.0088 Score=46.75 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.|++|+|||+|+..+....
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 39999999999999999988754
No 367
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.36 E-value=0.0028 Score=50.43 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHc
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLY 99 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~ 99 (309)
.+.|.||+|+|||||++.++....
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 389999999999999999998864
No 368
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.36 E-value=0.022 Score=43.83 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
++|.|++|+|||+|+..+...-
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 9999999999999999987653
No 369
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.35 E-value=0.012 Score=54.06 Aligned_cols=43 Identities=21% Similarity=0.434 Sum_probs=32.3
Q ss_pred ccEEEEEeCCC-CCCHHHHHHHHHHHHHhcCCceEEEEecCCcc
Q 021660 141 SVKLVLLDEAD-AMTKDAQFALRRVIEKYTKNTRFALICNQVNK 183 (309)
Q Consensus 141 ~~~lliiDe~~-~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 183 (309)
++.++++||.. .+.+.....+.+.+.+......+|+++++...
T Consensus 498 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~ 541 (582)
T 3b60_A 498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLST 541 (582)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGG
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHH
Confidence 67899999964 56677778888888876556667777876653
No 370
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.35 E-value=0.007 Score=45.72 Aligned_cols=22 Identities=45% Similarity=0.638 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (309)
.+++.|++|+|||+|+..+...
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 4999999999999999988754
No 371
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=96.35 E-value=0.03 Score=49.58 Aligned_cols=37 Identities=19% Similarity=0.137 Sum_probs=26.3
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHH
Q 021660 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
++.-...+..++.+ ++++.+|+|+|||..+..++...
T Consensus 11 ~~~Q~~~i~~~~~~----~~ll~~~tG~GKT~~~~~~~~~~ 47 (494)
T 1wp9_A 11 RIYQEVIYAKCKET----NCLIVLPTGLGKTLIAMMIAEYR 47 (494)
T ss_dssp CHHHHHHHHHGGGS----CEEEECCTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhC----CEEEEcCCCCCHHHHHHHHHHHH
Confidence 34444445444444 69999999999999887776664
No 372
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.35 E-value=0.0084 Score=50.55 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=21.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHHc
Q 021660 77 LLLYGPPGTGKTSTILAVARKLY 99 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~ 99 (309)
+.|.||+|+||||+++.+...+.
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 89999999999999999988874
No 373
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.34 E-value=0.0032 Score=50.47 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=22.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHcc
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYG 100 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (309)
.++|.|++|+||||+++.+++.+..
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3899999999999999999999854
No 374
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.34 E-value=0.0069 Score=47.79 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=19.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (309)
.+++.|++|+|||+|+..+...
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3999999999999999998754
No 375
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.33 E-value=0.01 Score=45.39 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+++.|++|+|||+|+..+...-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 39999999999999999998654
No 376
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.33 E-value=0.021 Score=44.78 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
..+++.|++|+|||+|+..+....
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 459999999999999999998754
No 377
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.33 E-value=0.0036 Score=49.10 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=21.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+.|.|++|+||||+++.+++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 58999999999999999999987
No 378
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.32 E-value=0.012 Score=45.29 Aligned_cols=23 Identities=30% Similarity=0.522 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.|++|+|||+|+..+...-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 39999999999999999988754
No 379
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.32 E-value=0.0096 Score=54.04 Aligned_cols=42 Identities=10% Similarity=0.252 Sum_probs=32.8
Q ss_pred ccEEEEEeCC-CCCCHHHHHHHHHHHHHhcCCceEEEEecCCc
Q 021660 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYTKNTRFALICNQVN 182 (309)
Q Consensus 141 ~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 182 (309)
++.++++||. ..|.......+.+++.+......+|+++.+..
T Consensus 156 ~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~ 198 (538)
T 3ozx_A 156 EADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLI 198 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChH
Confidence 6889999995 46777888889999988765566777776654
No 380
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.32 E-value=0.016 Score=43.73 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~ 97 (309)
+++.|++|+|||+|+..+...
T Consensus 17 i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 999999999999999999864
No 381
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.31 E-value=0.017 Score=55.70 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=18.6
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVAR 96 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~ 96 (309)
.++|+||.|+||||+++.++-
T Consensus 664 i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999998843
No 382
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.31 E-value=0.023 Score=45.61 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.|++|+|||+++..+...-
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 49999999999999999988654
No 383
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.31 E-value=0.0051 Score=49.17 Aligned_cols=27 Identities=22% Similarity=0.317 Sum_probs=20.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccC
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGA 101 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~ 101 (309)
..++|.|++|+||||.++.+++.+...
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 349999999999999999999998544
No 384
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.065 Score=52.47 Aligned_cols=62 Identities=16% Similarity=0.177 Sum_probs=34.2
Q ss_pred CCCCCCCCcChhhhcCCCCccc--cccChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHH
Q 021660 33 GTPPDIKASPWVEKYRPQSLAD--VAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 33 ~~~~~~~~~~~~~~~~p~~~~~--~ig~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~ 97 (309)
..++.....+|.+...|..... +--.+.-.+.+..+.. + .++++.+|+|+|||..+...+..
T Consensus 61 ~~p~~~~~~~~~~~~~p~~~~~~~f~L~~~Q~eai~~l~~-g--~~vLV~apTGSGKTlva~lai~~ 124 (1010)
T 2xgj_A 61 ALPPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDR-G--ESVLVSAHTSAGKTVVAEYAIAQ 124 (1010)
T ss_dssp ECCTTCCCCCGGGCCCSSCSCCCSSCCCHHHHHHHHHHHH-T--CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCCcccCCCCcccChhhHHhCCCCCCHHHHHHHHHHHc-C--CCEEEECCCCCChHHHHHHHHHH
Confidence 3444445556666554533111 1123333334444333 3 46999999999999987544443
No 385
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.30 E-value=0.012 Score=44.60 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
+++.|++|+|||+|+..+...-
T Consensus 13 i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 13 VMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 9999999999999999987654
No 386
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.29 E-value=0.0044 Score=50.47 Aligned_cols=24 Identities=38% Similarity=0.621 Sum_probs=22.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
..+.|.||+|+||||+++.+++.+
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 459999999999999999999887
No 387
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.29 E-value=0.0053 Score=48.64 Aligned_cols=21 Identities=38% Similarity=0.471 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~ 97 (309)
+++.|++|+|||+|+..+...
T Consensus 18 i~v~G~~~~GKSsli~~~~~~ 38 (221)
T 3gj0_A 18 LVLVGDGGTGKTTFVKRHLTG 38 (221)
T ss_dssp EEEEECTTSSHHHHHTTBHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 999999999999999984433
No 388
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.28 E-value=0.008 Score=45.08 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (309)
.+++.|++|+|||+++..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3899999999999999999754
No 389
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=96.27 E-value=0.022 Score=49.62 Aligned_cols=38 Identities=29% Similarity=0.403 Sum_probs=24.6
Q ss_pred ccEEEEEeCCCCCCHH-HHHHHHHHHHHhcCCceEEEEe
Q 021660 141 SVKLVLLDEADAMTKD-AQFALRRVIEKYTKNTRFALIC 178 (309)
Q Consensus 141 ~~~lliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~ 178 (309)
...+||+||+|.+... ....+..++...+....+++.|
T Consensus 179 ~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 217 (410)
T 2j0s_A 179 AIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLIS 217 (410)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEE
T ss_pred heeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEE
Confidence 4578999999976533 2455566666555555565555
No 390
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.26 E-value=0.0025 Score=50.25 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+.|.||+|+||||+++.++..+
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999987
No 391
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.26 E-value=0.0098 Score=55.15 Aligned_cols=40 Identities=33% Similarity=0.500 Sum_probs=29.6
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHcc
Q 021660 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100 (309)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (309)
++.....+...+.. +..++.||||||||+++..++..+..
T Consensus 182 n~~Q~~av~~~l~~---~~~li~GppGTGKT~~~~~~i~~l~~ 221 (624)
T 2gk6_A 182 NHSQVYAVKTVLQR---PLSLIQGPPGTGKTVTSATIVYHLAR 221 (624)
T ss_dssp CHHHHHHHHHHHTC---SEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhcC---CCeEEECCCCCCHHHHHHHHHHHHHH
Confidence 44555556555532 45899999999999999888887743
No 392
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.26 E-value=0.051 Score=42.13 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=20.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.|++|+|||+|+..+...-
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 39999999999999999998764
No 393
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.26 E-value=0.014 Score=45.08 Aligned_cols=23 Identities=26% Similarity=0.612 Sum_probs=20.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+++.|++|+|||+|+..+...-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCcHHHHHHHHHcCC
Confidence 49999999999999999998743
No 394
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.26 E-value=0.003 Score=49.18 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
+.|+|++|+||||+++.+++.+
T Consensus 15 IgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 8999999999999999999986
No 395
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.25 E-value=0.0031 Score=50.15 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+.|.||+|+||||+++.++...
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999999876
No 396
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.24 E-value=0.0059 Score=46.50 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~ 97 (309)
-.+++.|++|+|||+++..+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999988764
No 397
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.24 E-value=0.011 Score=45.47 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.|++|+|||+|+..+...-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 39999999999999999998754
No 398
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.23 E-value=0.003 Score=47.50 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=21.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+.|.||.|+|||||++.++..+
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999999987
No 399
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.23 E-value=0.019 Score=50.93 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHHcc
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYG 100 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~ 100 (309)
++|.|+||+|||+++..++.....
T Consensus 203 ~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 203 NIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999988743
No 400
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=96.23 E-value=0.025 Score=49.92 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=17.6
Q ss_pred CeEEEECCCCCcHHHHH-HHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTI-LAVARK 97 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~-~~l~~~ 97 (309)
.++++.||+|+|||..+ ..+.+.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~ 26 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVRE 26 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46999999999999875 444433
No 401
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.23 E-value=0.032 Score=42.80 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=20.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+++.|++|+|||+|+..+...-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 39999999999999999998654
No 402
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.22 E-value=0.094 Score=39.62 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (309)
.++|.|++|+|||+|+..+...
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4999999999999999999854
No 403
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.22 E-value=0.024 Score=42.94 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
+++.|++|+|||+++..+...-
T Consensus 10 i~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 10 LGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEECCGGGCHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 8999999999999999998753
No 404
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.21 E-value=0.0027 Score=50.02 Aligned_cols=24 Identities=21% Similarity=0.545 Sum_probs=21.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
..+.|.||+|+||||+++.++..+
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 348999999999999999999886
No 405
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.21 E-value=0.028 Score=44.18 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (309)
.++|.|++|+|||+|+..+...
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3999999999999999988754
No 406
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.21 E-value=0.036 Score=43.06 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.|++|+|||+|+..+...-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 39999999999999999998764
No 407
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=96.20 E-value=0.019 Score=49.56 Aligned_cols=39 Identities=23% Similarity=0.389 Sum_probs=25.3
Q ss_pred ccEEEEEeCCCCCCHH-HHHHHHHHHHHhcCCceEEEEec
Q 021660 141 SVKLVLLDEADAMTKD-AQFALRRVIEKYTKNTRFALICN 179 (309)
Q Consensus 141 ~~~lliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~ 179 (309)
...+||+||+|.+... ....+..++...++...+++.|.
T Consensus 162 ~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 201 (394)
T 1fuu_A 162 KIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSA 201 (394)
T ss_dssp TCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECS
T ss_pred hCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEE
Confidence 4679999999987432 23455566666555666666553
No 408
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.19 E-value=0.0027 Score=49.86 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=19.3
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVAR 96 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~ 96 (309)
.+.|.|++|+||||+++.++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999977
No 409
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.18 E-value=0.002 Score=50.04 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.||+|+|||+++..+++..
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 38999999999999999999875
No 410
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=96.17 E-value=0.036 Score=49.87 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=27.2
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHH
Q 021660 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
++.-...+..++.+ ...+++||+|+|||..+..++...
T Consensus 115 ~~~Q~~ai~~~~~~---~~~ll~~~tGsGKT~~~~~~~~~~ 152 (510)
T 2oca_A 115 HWYQKDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYY 152 (510)
T ss_dssp CHHHHHHHHHHHHH---SEEEEECCSTTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHHHH
Confidence 44445555555544 459999999999999987776664
No 411
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.17 E-value=0.008 Score=51.46 Aligned_cols=35 Identities=29% Similarity=0.359 Sum_probs=26.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEE
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILE 109 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~ 109 (309)
+.+.|.|+||+|||||+..+...+...+..+.++.
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~ 109 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLA 109 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEe
Confidence 34999999999999999999987644433333333
No 412
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.17 E-value=0.037 Score=43.16 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=19.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~ 97 (309)
..+.|.|++|+|||||++.++..
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 34999999999999999988654
No 413
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=96.16 E-value=0.066 Score=53.23 Aligned_cols=39 Identities=18% Similarity=0.183 Sum_probs=27.5
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHH
Q 021660 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVAR 96 (309)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~ 96 (309)
|..++..+...+.++++..++++||+|+|||..+...+-
T Consensus 608 Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~ 646 (1151)
T 2eyq_A 608 QAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAF 646 (1151)
T ss_dssp HHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHH
Confidence 455555555555556656799999999999987654443
No 414
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.14 E-value=0.0033 Score=51.21 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=21.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+.|+|++|+||||+++.+++.+
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 415
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.13 E-value=0.023 Score=42.95 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~ 97 (309)
+++.|++|+|||+|+..+...
T Consensus 9 i~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHGG
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 999999999999999998754
No 416
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.13 E-value=0.0059 Score=47.22 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+++.|++|+|||+++..+....
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 39999999999999999998764
No 417
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.12 E-value=0.0031 Score=49.23 Aligned_cols=23 Identities=17% Similarity=0.188 Sum_probs=20.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~ 97 (309)
..+.|+|++|+||||+++.+++.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 34899999999999999999885
No 418
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.12 E-value=0.013 Score=49.54 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHc
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLY 99 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~ 99 (309)
.++|+||||+|||+++..++....
T Consensus 109 i~~i~G~~GsGKT~la~~la~~~~ 132 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLSVNVQ 132 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHhHHHHHHHHHHh
Confidence 399999999999999999998753
No 419
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.11 E-value=0.014 Score=51.61 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=23.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCcc
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQY 103 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~ 103 (309)
++|.|+||+|||+++..++......+.
T Consensus 200 iiIaG~pG~GKTtlal~ia~~~a~~g~ 226 (444)
T 3bgw_A 200 VLIAARPSMGKTAFALKQAKNMSDNDD 226 (444)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHTTC
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHcCC
Confidence 999999999999999999888754433
No 420
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.09 E-value=0.0069 Score=54.36 Aligned_cols=46 Identities=7% Similarity=0.042 Sum_probs=35.0
Q ss_pred cccChHHHHHHHHHH--hcCCCCeEEEECCCCCcHHHHHHHHHHHHcc
Q 021660 55 VAAHRDIVDTIDRLT--SENRLPHLLLYGPPGTGKTSTILAVARKLYG 100 (309)
Q Consensus 55 ~ig~~~~~~~l~~~~--~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (309)
-...+++.+.+.+.. ...+...++|.|.+|+||||+++.+++.+..
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 344677777777765 3333345999999999999999999999953
No 421
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.08 E-value=0.025 Score=54.44 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=19.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (309)
.++|+||.|+||||+++.++..
T Consensus 675 i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHHH
Confidence 3899999999999999988643
No 422
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=96.08 E-value=0.035 Score=49.43 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=28.0
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHH
Q 021660 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
++.-.+.+..++.. ..+++.||+|+|||..+..++...
T Consensus 95 ~~~Q~~ai~~i~~~---~~~ll~~~TGsGKT~~~l~~i~~~ 132 (472)
T 2fwr_A 95 RDYQEKALERWLVD---KRGCIVLPTGSGKTHVAMAAINEL 132 (472)
T ss_dssp CHHHHHHHHHHTTT---TEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhc---CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 44555555555544 349999999999999988777776
No 423
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.08 E-value=0.02 Score=51.95 Aligned_cols=51 Identities=10% Similarity=0.219 Sum_probs=34.5
Q ss_pred ccEEEEEeCC-CCCCHHHHHHHHHHHHHhc-CCceEEEEecCCcccchhhhcce
Q 021660 141 SVKLVLLDEA-DAMTKDAQFALRRVIEKYT-KNTRFALICNQVNKIIPALQSRC 192 (309)
Q Consensus 141 ~~~lliiDe~-~~l~~~~~~~l~~~l~~~~-~~~~~i~~~~~~~~l~~~l~~r~ 192 (309)
++.+|++||. ..|.......+.+++.... ....+|+++.+...+ ..+..|.
T Consensus 176 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~-~~~~dri 228 (538)
T 1yqt_A 176 NATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVL-DYLSDII 228 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-HHHCSEE
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEE
Confidence 7889999995 5677777888888887653 245677777665432 3343443
No 424
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.06 E-value=0.0026 Score=48.53 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=27.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecC
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 113 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 113 (309)
..+.|.|++|+||||+++.++..+...+...-.+.++..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~ 41 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAH 41 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCc
Confidence 348899999999999999999998655433444444443
No 425
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.06 E-value=0.0072 Score=46.98 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (309)
.+++.|++|+|||+++..+...
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3999999999999999998754
No 426
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.06 E-value=0.0087 Score=46.65 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=4.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (309)
.++|.|++|+|||+|+..+...
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3999999999999999988766
No 427
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.06 E-value=0.015 Score=45.51 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=20.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.|++|+|||+|+..+...-
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 49999999999999999988653
No 428
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.05 E-value=0.012 Score=55.55 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|+||.|+||||+++.++...
T Consensus 578 i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 578 LVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHhhh
Confidence 48999999999999999998764
No 429
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.01 E-value=0.0099 Score=49.93 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=21.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHc
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLY 99 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~ 99 (309)
.+.|.||+|+||||+++.++..+.
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 389999999999999999999874
No 430
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.01 E-value=0.0045 Score=53.62 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=21.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.||+|+|||+++..+++.+
T Consensus 4 ~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHHHC
Confidence 48999999999999999999998
No 431
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.01 E-value=0.0087 Score=46.65 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+++.|++|+|||+++..+...-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 39999999999999999988753
No 432
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.01 E-value=0.03 Score=51.73 Aligned_cols=81 Identities=16% Similarity=0.152 Sum_probs=49.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhccccc-c-CCCCccEEEEEeCCCC
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFS-F-GVKASVKLVLLDEADA 152 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~lliiDe~~~ 152 (309)
...+|+|+.|.|||+++-.++..+.. . +.+..........+.+......+...+. + ....+..+|||||+-.
T Consensus 193 ~~~vlta~RGRGKSa~lG~~~a~~~~-----~-~~vtAP~~~a~~~l~~~~~~~i~~~~Pd~~~~~~~~~dlliVDEAAa 266 (671)
T 2zpa_A 193 GVAAVTAARGRGKSALAGQLISRIAG-----R-AIVTAPAKASTDVLAQFAGEKFRFIAPDALLASDEQADWLVVDEAAA 266 (671)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHSSS-----C-EEEECSSCCSCHHHHHHHGGGCCBCCHHHHHHSCCCCSEEEEETGGG
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHHh-----C-cEEECCCHHHHHHHHHHhhCCeEEeCchhhhhCcccCCEEEEEchhc
Confidence 34899999999999999999998732 1 2455555555555544333221111110 0 1112467999999988
Q ss_pred CCHHHHHHH
Q 021660 153 MTKDAQFAL 161 (309)
Q Consensus 153 l~~~~~~~l 161 (309)
++......|
T Consensus 267 Ip~pll~~l 275 (671)
T 2zpa_A 267 IPAPLLHQL 275 (671)
T ss_dssp SCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 885443333
No 433
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.01 E-value=0.01 Score=45.65 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.|++|+|||+|+..+...-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 39999999999999999998654
No 434
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=96.01 E-value=0.025 Score=45.45 Aligned_cols=38 Identities=18% Similarity=0.339 Sum_probs=24.6
Q ss_pred ccEEEEEeCCCCCCHH-HHHHHHHHHHHhcCCceEEEEe
Q 021660 141 SVKLVLLDEADAMTKD-AQFALRRVIEKYTKNTRFALIC 178 (309)
Q Consensus 141 ~~~lliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~ 178 (309)
+-.+|||||+|.+... ....+..++...++...+++.+
T Consensus 176 ~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~S 214 (242)
T 3fe2_A 176 RTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 214 (242)
T ss_dssp TCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEE
T ss_pred cccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEE
Confidence 4568999999987643 2445556666655556565554
No 435
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.98 E-value=0.0087 Score=48.11 Aligned_cols=24 Identities=21% Similarity=0.506 Sum_probs=22.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
..+.|.|++|+||||+++.++..+
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 348999999999999999999987
No 436
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.97 E-value=0.017 Score=52.35 Aligned_cols=52 Identities=13% Similarity=0.274 Sum_probs=34.7
Q ss_pred CccEEEEEeCC-CCCCHHHHHHHHHHHHHhc--CCceEEEEecCCcccchhhhcce
Q 021660 140 ASVKLVLLDEA-DAMTKDAQFALRRVIEKYT--KNTRFALICNQVNKIIPALQSRC 192 (309)
Q Consensus 140 ~~~~lliiDe~-~~l~~~~~~~l~~~l~~~~--~~~~~i~~~~~~~~l~~~l~~r~ 192 (309)
.++.++++||. ..+.......+.+++.+.. ....+|+++.+...+ ..+..|.
T Consensus 402 ~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~-~~~aDri 456 (538)
T 3ozx_A 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIH-DYIADRI 456 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-HHHCSEE
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-HHhCCEE
Confidence 36889999995 4567777888888888753 345667777665433 2344444
No 437
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.95 E-value=0.027 Score=42.79 Aligned_cols=23 Identities=35% Similarity=0.613 Sum_probs=9.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+++.|++|+|||+|+..+...-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 39999999999999999987553
No 438
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.94 E-value=0.0055 Score=51.33 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=23.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCc
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQ 102 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~ 102 (309)
+.|.||.|+||||++..++..+...+
T Consensus 103 i~lvG~nGsGKTTll~~Lag~l~~~~ 128 (302)
T 3b9q_A 103 IMIVGVNGGGKTTSLGKLAHRLKNEG 128 (302)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 89999999999999999999885443
No 439
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.94 E-value=0.0072 Score=47.46 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=20.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+++.|++|+|||+|+..+...-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 39999999999999999988653
No 440
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.93 E-value=0.0099 Score=59.91 Aligned_cols=44 Identities=18% Similarity=0.447 Sum_probs=33.6
Q ss_pred ccEEEEEeCCCC-CCHHHHHHHHHHHHHhcCCceEEEEecCCccc
Q 021660 141 SVKLVLLDEADA-MTKDAQFALRRVIEKYTKNTRFALICNQVNKI 184 (309)
Q Consensus 141 ~~~lliiDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l 184 (309)
+++|+++||+-. +..+....+.+.+++...+..+|+++++...+
T Consensus 1235 ~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi 1279 (1321)
T 4f4c_A 1235 NPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTV 1279 (1321)
T ss_dssp CCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTT
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHH
Confidence 678999999854 45666778888888877777888888766543
No 441
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.93 E-value=0.031 Score=43.60 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=20.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (309)
.+++.|++|+|||+|+..+...
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4999999999999999999864
No 442
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=95.93 E-value=0.095 Score=51.83 Aligned_cols=38 Identities=18% Similarity=0.327 Sum_probs=25.0
Q ss_pred ccEEEEEeCCCCCCHHH-HHHHHHHHHHhcCCceEEEEe
Q 021660 141 SVKLVLLDEADAMTKDA-QFALRRVIEKYTKNTRFALIC 178 (309)
Q Consensus 141 ~~~lliiDe~~~l~~~~-~~~l~~~l~~~~~~~~~i~~~ 178 (309)
+-.+|||||+|++.... ...+..++...+....+|+.|
T Consensus 290 ~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~qvl~lS 328 (1108)
T 3l9o_A 290 EVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLS 328 (1108)
T ss_dssp HEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSEEEEEE
T ss_pred cCCEEEEhhhhhccccchHHHHHHHHHhcCCCceEEEEc
Confidence 45799999999997543 333445555556666666654
No 443
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.93 E-value=0.017 Score=55.09 Aligned_cols=40 Identities=33% Similarity=0.500 Sum_probs=29.4
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHcc
Q 021660 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100 (309)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (309)
++.....+...+.. +..+|.||||||||+++..++..+..
T Consensus 358 n~~Q~~Av~~~l~~---~~~lI~GppGTGKT~ti~~~i~~l~~ 397 (800)
T 2wjy_A 358 NHSQVYAVKTVLQR---PLSLIQGPPGTGKTVTSATIVYHLAR 397 (800)
T ss_dssp CHHHHHHHHHHHTS---SEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhccC---CeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 44445555555542 45899999999999999988887753
No 444
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.91 E-value=0.0033 Score=49.43 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
+.|.|++|+||||+++.++..+
T Consensus 24 i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 8899999999999999998864
No 445
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.90 E-value=0.022 Score=44.16 Aligned_cols=19 Identities=26% Similarity=0.494 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVA 95 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~ 95 (309)
++|.|++|+|||+|+..+.
T Consensus 26 i~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 26 VMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEECSTTSSHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 9999999999999999885
No 446
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.89 E-value=0.022 Score=57.41 Aligned_cols=43 Identities=21% Similarity=0.411 Sum_probs=29.4
Q ss_pred CccEEEEEeCCCC-CCHHHHHHHHHHHHHhcCCceEEEEecCCc
Q 021660 140 ASVKLVLLDEADA-MTKDAQFALRRVIEKYTKNTRFALICNQVN 182 (309)
Q Consensus 140 ~~~~lliiDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 182 (309)
.++.++++||+-. +.......+.+.++....+..+|+++++..
T Consensus 571 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls 614 (1321)
T 4f4c_A 571 RNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLS 614 (1321)
T ss_dssp TCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTT
T ss_pred cCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHH
Confidence 3678999999743 344455667777777665666777776554
No 447
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.89 E-value=0.011 Score=46.72 Aligned_cols=20 Identities=40% Similarity=0.496 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVAR 96 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~ 96 (309)
++|.|++|+|||+|+..+..
T Consensus 14 i~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 14 ICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEECCTTSSHHHHHCBCTT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 99999999999999998874
No 448
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.89 E-value=0.0035 Score=50.27 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=14.9
Q ss_pred eEEEECCCCCcHHHHHHHHH-HHH
Q 021660 76 HLLLYGPPGTGKTSTILAVA-RKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~-~~~ 98 (309)
.+.|.||+|+||||+++.++ ...
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEEECSCC----CHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 48999999999999999999 765
No 449
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.88 E-value=0.096 Score=45.87 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=27.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCcccccEEEE
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 110 (309)
+.+.|++|+||||++..++..+...+..+.++..
T Consensus 101 i~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 101 WFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 7888999999999999999998665554444433
No 450
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=95.88 E-value=0.033 Score=46.89 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=18.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~ 97 (309)
.++++.+|+|+|||..+...+-.
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~ 54 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILE 54 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEcCCCCcHHHHHHHHHHh
Confidence 45999999999999876655544
No 451
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.87 E-value=0.0026 Score=52.96 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=19.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHc
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLY 99 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (309)
..+.|+||+|+||||+++.+++.+.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3489999999999999999999873
No 452
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.85 E-value=0.034 Score=43.25 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=20.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.|++|+|||+|+..+...-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 39999999999999999987654
No 453
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.85 E-value=0.0099 Score=54.06 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=33.5
Q ss_pred cChHHHHHHHHHH--hcCCCCeEEEECCCCCcHHHHHHHHHHHHccCc
Q 021660 57 AHRDIVDTIDRLT--SENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102 (309)
Q Consensus 57 g~~~~~~~l~~~~--~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~ 102 (309)
.++++.+.+.... .......++|+|++|+||||+++.+++.+...+
T Consensus 353 ~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G 400 (546)
T 2gks_A 353 TRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQARG 400 (546)
T ss_dssp SCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred cchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhhcC
Confidence 3456666666665 223333489999999999999999999885433
No 454
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.85 E-value=0.0087 Score=47.36 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=21.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+.|+|++|+||||+++.+++.+
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 48999999999999999999987
No 455
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.84 E-value=0.0097 Score=49.75 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=22.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
..+.|+||+|+|||||++.++..+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 349999999999999999999987
No 456
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.84 E-value=0.032 Score=49.82 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=22.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHc
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLY 99 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~ 99 (309)
.+++.|.||+||||+++.+++.+.
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 499999999999999999999874
No 457
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.83 E-value=0.0054 Score=48.61 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVAR 96 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~ 96 (309)
.+.|.|++|+||||+++.++.
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999987
No 458
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.82 E-value=0.0078 Score=46.99 Aligned_cols=29 Identities=24% Similarity=0.286 Sum_probs=25.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCcccc
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQYHN 105 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~ 105 (309)
+.|.|+.|+||||.++.+++.+...+..+
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v 31 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKV 31 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcE
Confidence 67899999999999999999997666543
No 459
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.80 E-value=0.0061 Score=49.35 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+.|.||.|+||||+++.++..+
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999876
No 460
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.80 E-value=0.0097 Score=48.48 Aligned_cols=35 Identities=26% Similarity=0.442 Sum_probs=28.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCcccccEEEEec
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 112 (309)
+++.|.+|+||||++..++..+. .+....++..+.
T Consensus 17 ~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~ 51 (262)
T 1yrb_A 17 VVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDT 51 (262)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCS
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 89999999999999999999987 666665555444
No 461
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=95.78 E-value=0.049 Score=49.46 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
++|.|.+|+|||+|+..+...-
T Consensus 44 V~lvG~~~vGKSSLl~~l~~~~ 65 (535)
T 3dpu_A 44 VHLIGDGMAGKTSLLKQLIGET 65 (535)
T ss_dssp EEEESSSCSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 9999999999999999987653
No 462
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.76 E-value=0.0064 Score=51.17 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=22.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHHcc
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYG 100 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~ 100 (309)
+.|.||+|+||||+++.++..+..
T Consensus 93 vgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 93 IGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHT
T ss_pred EEEECCCCchHHHHHHHHHhhccc
Confidence 899999999999999999998753
No 463
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.76 E-value=0.02 Score=44.54 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (309)
.++|.|++|+|||+|+..+...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3999999999999999998754
No 464
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.74 E-value=0.0067 Score=50.14 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=22.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHc
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLY 99 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (309)
..++|+||+|+||||++..++..+.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3499999999999999999998664
No 465
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.73 E-value=0.029 Score=51.67 Aligned_cols=42 Identities=19% Similarity=0.484 Sum_probs=31.7
Q ss_pred ccEEEEEeCCC-CCCHHHHHHHHHHHHHhcCCceEEEEecCCc
Q 021660 141 SVKLVLLDEAD-AMTKDAQFALRRVIEKYTKNTRFALICNQVN 182 (309)
Q Consensus 141 ~~~lliiDe~~-~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 182 (309)
++.++++||.- .+.+.....+.+.+.+......+|+++++..
T Consensus 501 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 543 (595)
T 2yl4_A 501 NPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLS 543 (595)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHH
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 67899999964 5667778888888887655666777777654
No 466
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.73 E-value=0.0082 Score=49.73 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=20.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+.|+|++|+||||+++.++ .+
T Consensus 77 iI~I~G~~GSGKSTva~~La-~l 98 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK-NL 98 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH-HH
T ss_pred EEEEECCCCCCHHHHHHHHH-HC
Confidence 49999999999999999998 44
No 467
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.73 E-value=0.16 Score=40.26 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=19.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (309)
.++|.|++|+|||+|+..+...
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4999999999999999998765
No 468
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.71 E-value=0.005 Score=53.03 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHc
Q 021660 63 DTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99 (309)
Q Consensus 63 ~~l~~~~~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (309)
+.+.-.+..+ ..++|.||+|+||||+++.++....
T Consensus 166 ~~l~~~i~~G--~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 166 SFLRRAVQLE--RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HHHHHHHHTT--CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred HHHHHHHhcC--CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4444444554 3599999999999999999998764
No 469
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=95.69 E-value=0.067 Score=48.00 Aligned_cols=105 Identities=18% Similarity=0.225 Sum_probs=60.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEEecCCCcchHHHHHHHHHhhhccccc-cC----------------
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFS-FG---------------- 137 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------------- 137 (309)
.+.++.-+.|+|||..+-.++..+...+....+..+.+.. -...+...+..+....... +.
T Consensus 57 ~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~--l~~qw~~e~~~~~~~~~v~~~~g~~~~~~~~~~~ivi~ 134 (500)
T 1z63_A 57 FGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLS--VLKNWEEELSKFAPHLRFAVFHEDRSKIKLEDYDIILT 134 (500)
T ss_dssp CCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECST--THHHHHHHHHHHCTTSCEEECSSSTTSCCGGGSSEEEE
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHH--HHHHHHHHHHHHCCCceEEEEecCchhccccCCcEEEe
Confidence 3588999999999998888877764433333344444432 3355555565543211100 00
Q ss_pred -----------CCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCc
Q 021660 138 -----------VKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVN 182 (309)
Q Consensus 138 -----------~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 182 (309)
......+||+||+|.+.... ....+.+.......+++++++...
T Consensus 135 t~~~l~~~~~l~~~~~~~vIvDEaH~~kn~~-~~~~~~l~~l~~~~~l~LTaTP~~ 189 (500)
T 1z63_A 135 TYAVLLRDTRLKEVEWKYIVIDEAQNIKNPQ-TKIFKAVKELKSKYRIALTGTPIE 189 (500)
T ss_dssp EHHHHTTCHHHHTCCEEEEEEETGGGGSCTT-SHHHHHHHTSCEEEEEEECSSCST
T ss_pred eHHHHhccchhcCCCcCEEEEeCccccCCHh-HHHHHHHHhhccCcEEEEecCCCC
Confidence 01245789999999985332 234455555554556666666544
No 470
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.68 E-value=0.046 Score=51.12 Aligned_cols=41 Identities=20% Similarity=0.300 Sum_probs=29.7
Q ss_pred cEEEEEeCC-CCCCHHHHHHHHHHHHHhc-CCceEEEEecCCc
Q 021660 142 VKLVLLDEA-DAMTKDAQFALRRVIEKYT-KNTRFALICNQVN 182 (309)
Q Consensus 142 ~~lliiDe~-~~l~~~~~~~l~~~l~~~~-~~~~~i~~~~~~~ 182 (309)
+.+|++||. ..|.+.....+.+++.+.. ....+|+++.+..
T Consensus 565 p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~ 607 (670)
T 3ux8_A 565 RTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD 607 (670)
T ss_dssp CEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 579999995 4567777788888887654 2456777777654
No 471
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.67 E-value=0.066 Score=44.70 Aligned_cols=134 Identities=11% Similarity=0.140 Sum_probs=66.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHccC-----cc------------cccEEEEecCCCcc-hHHHHHHHHHhhhccccccC
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLYGA-----QY------------HNMILELNASDDRG-IDVVRQQIQDFASTQSFSFG 137 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~-----~~------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 137 (309)
.+.|.|.||+|||||+..+...-... +. ...+..++.+.... ...+...+...... .-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~----~l 84 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYE----AL 84 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHH----HT
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHH----HH
Confidence 48999999999999999998653210 00 11222333332211 11122222211111 01
Q ss_pred CCCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcccch-h-----hhc--c-eeEEEecCCChHHHHHH
Q 021660 138 VKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIP-A-----LQS--R-CTRFRFAPLEPVHVTER 208 (309)
Q Consensus 138 ~~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~-~-----l~~--r-~~~i~~~~~~~~~~~~~ 208 (309)
......++++|=-+.+... ...+.+.+.......++|++.|..+...+ . +.. . ...+.+...+...+..+
T Consensus 85 ~~ad~il~VvD~~~~~~~~-~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gv~~l 163 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTPE-DELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAEL 163 (301)
T ss_dssp SSCSEEEEEEETTSCCCHH-HHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCHHHHHHH
T ss_pred hcCCEEEEEEECCCCCChH-HHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHhcCcCcEEEEeCCCCCCHHHH
Confidence 1124567777765555543 34455555544335667777777664421 1 111 1 23455555555666666
Q ss_pred HHHHHH
Q 021660 209 LKHVIE 214 (309)
Q Consensus 209 l~~~~~ 214 (309)
+.....
T Consensus 164 ~~~l~~ 169 (301)
T 1wf3_A 164 KADLLA 169 (301)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 655543
No 472
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.66 E-value=0.22 Score=40.45 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=20.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+++.|.+|+|||+++..+...-
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 39999999999999999998653
No 473
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.65 E-value=0.16 Score=42.46 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~ 97 (309)
+.|.|.||+|||||+..+...
T Consensus 13 v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 13 VAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 999999999999999998765
No 474
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.65 E-value=0.0083 Score=51.41 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=23.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCc
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQ 102 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~ 102 (309)
+.|.||.|+||||++..++..+...+
T Consensus 160 i~lvG~nGsGKTTll~~Lag~l~~~~ 185 (359)
T 2og2_A 160 IMIVGVNGGGKTTSLGKLAHRLKNEG 185 (359)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEEcCCCChHHHHHHHHHhhccccC
Confidence 89999999999999999999885443
No 475
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=95.64 E-value=0.042 Score=49.00 Aligned_cols=135 Identities=14% Similarity=0.206 Sum_probs=60.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHc--cC---cc------------cccEEEEecCCCcchHHHHHHHHHhhhccccccCC
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLY--GA---QY------------HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGV 138 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~--~~---~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (309)
.++|.|+||+|||+|+..+...-. .. +. +..+..++.. +.......+..+..........
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~---G~~~~~~~ve~~gi~~~~~~~~ 311 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTA---GLREAGEEIEHEGIRRSRMKMA 311 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC-----------------------CCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECC---CCCcchhHHHHHHHHHHHhhcc
Confidence 399999999999999999876521 00 00 0111112221 1111111111110000011122
Q ss_pred CCccEEEEEeCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchh------hhcc--eeEEEecCCC---hHHHHH
Q 021660 139 KASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPA------LQSR--CTRFRFAPLE---PVHVTE 207 (309)
Q Consensus 139 ~~~~~lliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~l~~~------l~~r--~~~i~~~~~~---~~~~~~ 207 (309)
....-++++|--+............+++... ..++|++.|..+..... +... +..+.+...+ .+++.+
T Consensus 312 ~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~-~~piIvV~NK~Dl~~~~~~~~~~l~~~~~~~~i~vSAktg~GI~eL~~ 390 (476)
T 3gee_A 312 EADLILYLLDLGTERLDDELTEIRELKAAHP-AAKFLTVANKLDRAANADALIRAIADGTGTEVIGISALNGDGIDTLKQ 390 (476)
T ss_dssp SCSEEEEEEETTTCSSGGGHHHHHHHHHHCT-TSEEEEEEECTTSCTTTHHHHHHHHHHHTSCEEECBTTTTBSHHHHHH
T ss_pred cCCEEEEEEECCCCcchhhhHHHHHHHHhcC-CCCEEEEEECcCCCCccchhHHHHHhcCCCceEEEEECCCCCHHHHHH
Confidence 2355677788655554433334455555554 56777788876643221 2221 2345554444 355555
Q ss_pred HHHHHHH
Q 021660 208 RLKHVIE 214 (309)
Q Consensus 208 ~l~~~~~ 214 (309)
.+.+.+.
T Consensus 391 ~i~~~~~ 397 (476)
T 3gee_A 391 HMGDLVK 397 (476)
T ss_dssp HHTHHHH
T ss_pred HHHHHHh
Confidence 5555554
No 476
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.64 E-value=0.0089 Score=50.45 Aligned_cols=32 Identities=31% Similarity=0.480 Sum_probs=26.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCcccccEE
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMIL 108 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~ 108 (309)
+.|+|++|+||||++..++..+...+..+.++
T Consensus 108 I~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 89999999999999999999886555444443
No 477
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.63 E-value=0.012 Score=50.06 Aligned_cols=36 Identities=31% Similarity=0.385 Sum_probs=27.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHccCcccccEEEE
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 110 (309)
..+.|.|++|+||||+++.++..+...+..+.+...
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~ 91 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAV 91 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEE
Confidence 349999999999999999999887544444444433
No 478
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.61 E-value=0.0065 Score=47.02 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021660 77 LLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
+.|.|++|+|||||++.++...
T Consensus 32 v~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 8999999999999999998765
No 479
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=95.59 E-value=0.054 Score=46.42 Aligned_cols=24 Identities=25% Similarity=0.547 Sum_probs=20.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
..+++.|++|+||||++..++...
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 349999999999999999987653
No 480
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.59 E-value=0.007 Score=48.85 Aligned_cols=44 Identities=16% Similarity=0.221 Sum_probs=31.5
Q ss_pred CccEEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CceEEEEecCCcc
Q 021660 140 ASVKLVLLDEA-DAMTKDAQFALRRVIEKYTK--NTRFALICNQVNK 183 (309)
Q Consensus 140 ~~~~lliiDe~-~~l~~~~~~~l~~~l~~~~~--~~~~i~~~~~~~~ 183 (309)
.++.++++||. ..+.+.....+.+++.+... ...+|++|++...
T Consensus 143 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~ 189 (240)
T 2onk_A 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE 189 (240)
T ss_dssp TCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 37889999995 45677788888888877532 4567777766543
No 481
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.59 E-value=0.0069 Score=45.83 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (309)
.++|.|++|+||||++..+.+.
T Consensus 18 gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
Confidence 3999999999999999999885
No 482
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.58 E-value=0.0088 Score=53.26 Aligned_cols=26 Identities=38% Similarity=0.539 Sum_probs=22.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHHccCc
Q 021660 77 LLLYGPPGTGKTSTILAVARKLYGAQ 102 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~ 102 (309)
+.|.|++|+||||+++.++..+...+
T Consensus 296 I~LVGpNGSGKTTLl~~LAgll~~~~ 321 (503)
T 2yhs_A 296 ILMVGVNGVGKTTTIGKLARQFEQQG 321 (503)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEECCCcccHHHHHHHHHHHhhhcC
Confidence 89999999999999999999875443
No 483
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.57 E-value=0.0099 Score=47.94 Aligned_cols=22 Identities=41% Similarity=0.484 Sum_probs=19.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (309)
.++|+|+||+|||+++..++..
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 3999999999999999887754
No 484
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.56 E-value=0.038 Score=50.85 Aligned_cols=116 Identities=17% Similarity=0.232 Sum_probs=0.0
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHccCcccc----------------------------------------------
Q 021660 72 NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHN---------------------------------------------- 105 (309)
Q Consensus 72 ~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~---------------------------------------------- 105 (309)
.....+.|.||.|+|||||++.++..+.......
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 194 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKG 194 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccc
Q ss_pred -------------------------cEEEEecCCCcchHHHHHHHHHhhhccccccCCCCccEEEEEeC-CCCCCHHHHH
Q 021660 106 -------------------------MILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDE-ADAMTKDAQF 159 (309)
Q Consensus 106 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe-~~~l~~~~~~ 159 (309)
....-.....++...-+-.+....-. ++.++++|| ...|......
T Consensus 195 tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~---------~P~lLlLDEPTs~LD~~~~~ 265 (607)
T 3bk7_A 195 KVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLR---------KAHFYFFDEPSSYLDIRQRL 265 (607)
T ss_dssp BHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHS---------CCSEEEEECTTTTCCHHHHH
T ss_pred cHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhc---------CCCEEEEECCcccCCHHHHH
Q ss_pred HHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEE
Q 021660 160 ALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFR 196 (309)
Q Consensus 160 ~l~~~l~~~~~~~~~i~~~~~~~~l~~~l~~r~~~i~ 196 (309)
.+.+++.+......-|++.++.......+..|..++.
T Consensus 266 ~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~ 302 (607)
T 3bk7_A 266 KVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVY 302 (607)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEEC
No 485
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.56 E-value=0.051 Score=42.94 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=20.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.|++|+|||+|+..+...-
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 39999999999999999987653
No 486
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.55 E-value=0.0067 Score=48.95 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=21.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|.|++|+||||+++.+++.+
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999987
No 487
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.52 E-value=0.008 Score=48.41 Aligned_cols=43 Identities=14% Similarity=0.182 Sum_probs=30.3
Q ss_pred ccEEEEEeCC-CCCCHHHHHHHHHHHH---HhcCCceEEEEecCCcc
Q 021660 141 SVKLVLLDEA-DAMTKDAQFALRRVIE---KYTKNTRFALICNQVNK 183 (309)
Q Consensus 141 ~~~lliiDe~-~~l~~~~~~~l~~~l~---~~~~~~~~i~~~~~~~~ 183 (309)
++.++++||. ..+.+.....+.+.+. .......+|+++.+...
T Consensus 145 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~ 191 (237)
T 2cbz_A 145 NADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSY 191 (237)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTT
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHH
Confidence 6789999995 4567777788888873 33335567777776654
No 488
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.51 E-value=0.0089 Score=54.33 Aligned_cols=42 Identities=24% Similarity=0.386 Sum_probs=30.2
Q ss_pred ChHHHHHHHHHH--hcCCCCeEEEECCCCCcHHHHHHHHHHHHc
Q 021660 58 HRDIVDTIDRLT--SENRLPHLLLYGPPGTGKTSTILAVARKLY 99 (309)
Q Consensus 58 ~~~~~~~l~~~~--~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (309)
..++.+.+.... ...+...+.|.|++|+||||+++.++..+.
T Consensus 351 ~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 351 FPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp CHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 345555555543 222234589999999999999999999984
No 489
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.50 E-value=0.0069 Score=48.34 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=30.5
Q ss_pred CccEEEEEeCC-CCCCHHHHHHHHHHHHHhc-CCceEEEEecCCc
Q 021660 140 ASVKLVLLDEA-DAMTKDAQFALRRVIEKYT-KNTRFALICNQVN 182 (309)
Q Consensus 140 ~~~~lliiDe~-~~l~~~~~~~l~~~l~~~~-~~~~~i~~~~~~~ 182 (309)
.++.++++||. ..+.+.....+.+++.+.. ....+|++|++..
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~ 201 (224)
T 2pcj_A 157 NEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE 201 (224)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 37789999995 4567777888888887653 2456667776543
No 490
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.48 E-value=0.038 Score=52.51 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.++|+||.|+||||+++.++...
T Consensus 609 i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 609 MLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 48999999999999999998764
No 491
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=94.45 E-value=0.0024 Score=49.94 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=21.1
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Q 021660 72 NRLPHLLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 72 ~~~~~~ll~G~~G~GKT~l~~~l~~~ 97 (309)
.+.-.+++.|++|+|||+|+..+...
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 33345999999999999999888754
No 492
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.46 E-value=0.012 Score=53.85 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=22.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHc
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLY 99 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~ 99 (309)
.++|+|++|+||||+++.+++.+.
T Consensus 398 ~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 398 TIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEeecCCCCCHHHHHHHHHHHhc
Confidence 489999999999999999999984
No 493
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=95.45 E-value=0.15 Score=43.71 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARKL 98 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (309)
.+.|.|++|+|||||++.+....
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 38899999999999999998653
No 494
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=95.44 E-value=0.066 Score=49.46 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=17.7
Q ss_pred CeEEEECCCCCcHHHH-HHHHHHHH
Q 021660 75 PHLLLYGPPGTGKTST-ILAVARKL 98 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l-~~~l~~~~ 98 (309)
..+++.+|+|+|||.. +..+...+
T Consensus 187 ~dvlv~a~TGSGKT~~~~lpil~~l 211 (618)
T 2whx_A 187 RLTIMDLHPGAGKTKRILPSIVREA 211 (618)
T ss_dssp CEEEECCCTTSSTTTTHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4599999999999986 34444443
No 495
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.44 E-value=0.0073 Score=46.35 Aligned_cols=21 Identities=29% Similarity=0.640 Sum_probs=19.3
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVAR 96 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~ 96 (309)
.++|.|++|+|||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 389999999999999999876
No 496
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.43 E-value=0.0072 Score=47.86 Aligned_cols=44 Identities=11% Similarity=0.194 Sum_probs=28.8
Q ss_pred CccEEEEEeCC-CCCCHHHHHHHHHHHHHhc-CCceEEEEecCCcc
Q 021660 140 ASVKLVLLDEA-DAMTKDAQFALRRVIEKYT-KNTRFALICNQVNK 183 (309)
Q Consensus 140 ~~~~lliiDe~-~~l~~~~~~~l~~~l~~~~-~~~~~i~~~~~~~~ 183 (309)
.++.++++||. ..+.+.....+.+++.+.. ....+|+++.+...
T Consensus 150 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~ 195 (214)
T 1sgw_A 150 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS 195 (214)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCT
T ss_pred hCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 36789999995 3455666677777776543 23456667765543
No 497
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.43 E-value=0.0089 Score=49.19 Aligned_cols=24 Identities=17% Similarity=0.437 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHc
Q 021660 76 HLLLYGPPGTGKTSTILAVARKLY 99 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~ 99 (309)
++.|.||+|+|||||++.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 378999999999999999998863
No 498
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.42 E-value=0.009 Score=44.89 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 021660 76 HLLLYGPPGTGKTSTILAVARK 97 (309)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~ 97 (309)
.++|.|++|+|||++++.+...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999763
No 499
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.41 E-value=0.012 Score=46.67 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=22.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHc
Q 021660 75 PHLLLYGPPGTGKTSTILAVARKLY 99 (309)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (309)
..++|.|++|+||||.++.+++.+.
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4499999999999999999999984
No 500
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.41 E-value=0.039 Score=43.24 Aligned_cols=23 Identities=39% Similarity=0.650 Sum_probs=21.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHHc
Q 021660 77 LLLYGPPGTGKTSTILAVARKLY 99 (309)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~ 99 (309)
+.|.|+.|+||||.++.+++.+.
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 78999999999999999999984
Done!