BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021661
(309 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 202 LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR--CFW----TKAI 255
LPFED+SFD I +++L P E K + +VLKPGG V + C++ KAI
Sbjct: 99 LPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAI 158
Query: 256 SIWT 259
W
Sbjct: 159 EAWN 162
>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
Length = 227
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 14/86 (16%)
Query: 172 IVGMGMNEEELKR-------NPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP 224
+VG+ ++E+ +++ E++V D KL FED +FD + + S+ + +P
Sbjct: 63 VVGVDISEDXIRKAREYAKSRESNVEFIVGDAR---KLSFEDKTFDYVIFIDSIVHF-EP 118
Query: 225 IE---VFKEMCQVLKPGGLAIVSFSN 247
+E VFKE+ +VLKP G I F++
Sbjct: 119 LELNQVFKEVRRVLKPSGKFIXYFTD 144
>pdb|3BKW|A Chain A, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
pdb|3BKW|B Chain B, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
Length = 243
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 10/118 (8%)
Query: 149 GVSILDL-CS-SWVSHFPPGYKQDRIVGMGMNEEELKRNPVL-----TEYVVQDLNLNPK 201
G+ I+DL C W + + ++G+ ++E+ L R Y DL+ K
Sbjct: 44 GLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKXLARARAAGPDTGITYERADLD---K 100
Query: 202 LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWT 259
L +SFD+ + +++ Y+ +F+ + Q L PGG + S + + A W
Sbjct: 101 LHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEHPIYXAPARPGWA 158
>pdb|1VLM|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase,
Possible Histamine N-Methyltransferase (Tm1293) From
Thermotoga Maritima At 2.20 A Resolution
pdb|1VLM|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase,
Possible Histamine N-Methyltransferase (Tm1293) From
Thermotoga Maritima At 2.20 A Resolution
Length = 219
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 202 LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 248
LP +D SFD V ++ ++ P KE ++LK GG IV +R
Sbjct: 96 LPLKDESFDFALXVTTICFVDDPERALKEAYRILKKGGYLIVGIVDR 142
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 202 LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSF 245
LPFED SFD + + S+ + +E +VL+PGG +AI F
Sbjct: 123 LPFEDASFDAVWALESLHHXPDRGRALREXARVLRPGGTVAIADF 167
>pdb|2GS9|A Chain A, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
pdb|2GS9|B Chain B, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
Length = 211
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 21/120 (17%)
Query: 148 PGVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEEL----KRNPVLTEYVVQDLNLNP 200
PG S+L++ + W+ P Y Q VG+ +E L +R P T
Sbjct: 36 PGESLLEVGAGTGYWLRRLP--YPQK--VGVEPSEAXLAVGRRRAPEATWVRAW----GE 87
Query: 201 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTS 260
LPF SFDV+ +++++ V E +VL+PGG +V +A+S W +
Sbjct: 88 ALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGV------LEALSPWAA 141
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 11/84 (13%)
Query: 166 GYKQDRIVGMGMNEEELKRNPVLTE-----YVVQDLNLNPKLPFEDNSFDVITNVVSVDY 220
GYK VG+ ++E +++ E ++ DL+ LPFE+ F+ I + S+++
Sbjct: 75 GYK---AVGVDISEVXIQKGKERGEGPDLSFIKGDLS---SLPFENEQFEAIXAINSLEW 128
Query: 221 LTKPIEVFKEMCQVLKPGGLAIVS 244
+P+ E+ +VLK G A ++
Sbjct: 129 TEEPLRALNEIKRVLKSDGYACIA 152
>pdb|2GO9|A Chain A, Rrm Domains 1 And 2 Of Prp24 From S. Cerevisiae
Length = 161
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 128 DPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGYKQDRI 172
D A+AA+TK + V N VS L C+ W+++FPP Y Q I
Sbjct: 55 DGALAAITKTHKVV--GQNEIIVSHLTECTLWMTNFPPSYTQRNI 97
>pdb|2GHP|A Chain A, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|B Chain B, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|C Chain C, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|D Chain D, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|E Chain E, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|F Chain F, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|G Chain G, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|H Chain H, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
Length = 292
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 128 DPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGYKQDRI 172
D A+AA+TK + V N VS L C+ W ++FPP Y Q I
Sbjct: 92 DGALAAITKTHKVV--GQNEIIVSHLTECTLWXTNFPPSYTQRNI 134
>pdb|2O57|A Chain A, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|B Chain B, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|C Chain C, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|D Chain D, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
Length = 297
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 28/44 (63%)
Query: 201 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244
++P EDNS+D I + + + ++VF+E +VLKP G+ ++
Sbjct: 143 EIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVXAIT 186
>pdb|2P8J|A Chain A, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
pdb|2P8J|B Chain B, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
Length = 209
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 201 KLPFEDNSFDVITNVVSVDYLTKP--IEVFKEMCQVLKPGGLAIVSF 245
KLPF+D S + + ++ + K E E+ +VLKPGGLA ++F
Sbjct: 82 KLPFKDESXSFVYSYGTIFHXRKNDVKEAIDEIKRVLKPGGLACINF 128
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 202 LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG 239
LPF D+SFD+IT + + + + +E+ +VLK G
Sbjct: 81 LPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDG 118
>pdb|1G8S|A Chain A, Methanococcus Jannaschii Fibrillarin Pre-Rrna Processing
Protein
Length = 230
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 11/57 (19%)
Query: 217 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAY 273
S+D P E+FKE ++L+ GG IV + + DHVM VG +
Sbjct: 182 SIDVTKDPKEIFKEQKEILEAGGFKIVD-----------EVDIEPFEKDHVMFVGIW 227
>pdb|1LNG|A Chain A, Crystal Structure Of The Srp19-7s.S Srp Rna Complex Of M.
Jannaschii
pdb|2V3C|A Chain A, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
pdb|2V3C|B Chain B, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
pdb|3NDB|A Chain A, Crystal Structure Of A Signal Sequence Bound To The Signal
Recognition Particle
Length = 87
Score = 31.6 bits (70), Expect = 0.63, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 165 PGY---KQDRIVGMGMNEEELKRNPVLT--EYVVQDLNLNPKLPFEDNSFD----VITNV 215
P Y K+ R G + EE P L E ++ L L PK+ + D + I
Sbjct: 5 PSYIDKKKSRREGRKVPEELAIEKPSLKDIEKALKKLGLEPKI-YRDKRYPRQHWEICGC 63
Query: 216 VSVDYLTKPIEVFKEMCQVLK 236
V VDY +++ KE+C+++K
Sbjct: 64 VEVDYKGNKLQLLKEICKIIK 84
>pdb|3DLC|A Chain A, Crystal Structure Of A Putative
S-Adenosyl-L-Methionine-Dependent Methyltransferase
(Mmp1179) From Methanococcus Maripaludis At 1.15 A
Resolution
Length = 219
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 10/57 (17%)
Query: 193 VQDLNLNPKL----------PFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG 239
+ D NLN ++ P EDN D+I + SV + F+E+ ++LK GG
Sbjct: 86 IADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGG 142
>pdb|1WZN|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|C Chain C, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
Length = 252
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 16/127 (12%)
Query: 131 IAALTKYYSEVFPPSNTPGVS-ILDL-CSSWVSHFPPGYKQDRIVGMGMNEEEL------ 182
+ A + E+F V +LDL C + + + +VG+ ++EE L
Sbjct: 23 VKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRK 82
Query: 183 -KRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVS-VDYLTKP--IEVFKEMCQVLKPG 238
K + E++ D+ ++ F+ N FD +T S + Y + ++F ++ + LKPG
Sbjct: 83 AKERNLKIEFLQGDV---LEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPG 138
Query: 239 GLAIVSF 245
G+ I F
Sbjct: 139 GVFITDF 145
>pdb|1FBN|A Chain A, Crystal Structure Of A Fibrillarin Homologue From
Methanococcus Jannaschii, A Hyperthermophile, At 1.6 A
Length = 230
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 217 SVDYLTKPIEVFKEMCQVLKPGGLAIVS 244
S+D P E+FKE ++L+ GG IV
Sbjct: 182 SIDVTKDPKEIFKEQKEILEAGGFKIVD 209
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 201 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFSNR 248
K+P DN+ D I + L++P++ +E+ +V KP LAI+ +
Sbjct: 99 KIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKE 147
>pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|B Chain B, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|C Chain C, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|D Chain D, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
Length = 260
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 190 EYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG 239
EYV D + PF D F ++T ++ + P E +VLK GG
Sbjct: 88 EYVQGDAE---QXPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGG 134
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 92 VQWPEQFPFKEEDFQRFDESPDSLFYETP--RFVTHIDDPAIAALTKYYSEVFPPSNTPG 149
++ PEQ P+++ F+ PD E P RF+T I PAI L + +V + +P
Sbjct: 39 IEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPAIDRLGRISLDVLKTNWSPA 98
Query: 150 VSI 152
+ I
Sbjct: 99 LQI 101
>pdb|2VNC|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VNC|B Chain B, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VR5|A Chain A, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VR5|B Chain B, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VUY|A Chain A, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
pdb|2VUY|B Chain B, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
Length = 718
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 240 LAIVSFSNRCFWTKAISIWTSTGDADHVMIVG-------AYFHYAGGYEPPQAVDISPNP 292
L + S +N+ + + I + TGD HV + G AY Y G Y+P + +PN
Sbjct: 45 LLLYSLTNQKYPKEIIEVKNKTGDIWHVFVPGLRPGQLYAYRVY-GPYKPELGLRFNPNK 103
Query: 293 GRSDP 297
DP
Sbjct: 104 VLIDP 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,037,119
Number of Sequences: 62578
Number of extensions: 430861
Number of successful extensions: 1029
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1012
Number of HSP's gapped (non-prelim): 32
length of query: 309
length of database: 14,973,337
effective HSP length: 99
effective length of query: 210
effective length of database: 8,778,115
effective search space: 1843404150
effective search space used: 1843404150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)