Query 021661
Match_columns 309
No_of_seqs 333 out of 2616
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 04:42:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021661.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021661hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2226 UbiE Methylase involve 99.9 1.3E-23 2.9E-28 185.8 12.5 140 81-248 9-160 (238)
2 PF01209 Ubie_methyltran: ubiE 99.9 1.5E-22 3.2E-27 180.2 8.3 99 147-248 46-157 (233)
3 KOG1540 Ubiquinone biosynthesi 99.9 4.1E-22 8.8E-27 174.1 9.5 167 64-259 42-231 (296)
4 PLN02233 ubiquinone biosynthes 99.8 6.3E-19 1.4E-23 159.8 15.9 97 147-246 72-183 (261)
5 PLN02396 hexaprenyldihydroxybe 99.8 1E-19 2.2E-24 168.9 10.5 158 147-308 130-318 (322)
6 PLN02244 tocopherol O-methyltr 99.8 5.9E-19 1.3E-23 165.7 14.7 141 147-291 117-282 (340)
7 COG2227 UbiG 2-polyprenyl-3-me 99.8 6.4E-19 1.4E-23 154.0 6.9 101 147-250 58-166 (243)
8 PRK05785 hypothetical protein; 99.8 3.2E-18 7E-23 151.9 10.6 108 132-247 39-148 (226)
9 TIGR02752 MenG_heptapren 2-hep 99.7 2.6E-17 5.6E-22 146.2 13.7 96 147-245 44-151 (231)
10 PF08241 Methyltransf_11: Meth 99.7 2.4E-18 5.1E-23 130.5 5.9 88 153-243 1-95 (95)
11 PRK10258 biotin biosynthesis p 99.7 1.9E-17 4.1E-22 149.1 12.5 125 131-260 27-155 (251)
12 PF13489 Methyltransf_23: Meth 99.7 8.1E-18 1.8E-22 140.2 4.7 131 147-283 21-159 (161)
13 PLN02490 MPBQ/MSBQ methyltrans 99.7 3.5E-16 7.5E-21 146.0 15.5 154 148-308 113-283 (340)
14 PRK14103 trans-aconitate 2-met 99.7 1E-16 2.2E-21 144.7 10.9 97 147-247 28-128 (255)
15 PTZ00098 phosphoethanolamine N 99.7 4.9E-16 1.1E-20 141.0 12.5 140 147-290 51-205 (263)
16 KOG1270 Methyltransferases [Co 99.7 2.1E-16 4.5E-21 139.3 8.6 137 149-292 90-254 (282)
17 PRK11036 putative S-adenosyl-L 99.7 1E-16 2.2E-21 144.8 6.5 98 148-248 44-152 (255)
18 TIGR02072 BioC biotin biosynth 99.7 2.4E-15 5.1E-20 133.3 14.6 132 149-285 35-174 (240)
19 PRK15068 tRNA mo(5)U34 methylt 99.7 1E-15 2.2E-20 142.6 12.6 146 138-290 114-277 (322)
20 TIGR00452 methyltransferase, p 99.7 1.4E-15 3.1E-20 140.7 13.4 158 127-291 101-277 (314)
21 PF13847 Methyltransf_31: Meth 99.6 4.8E-16 1E-20 129.4 8.0 96 148-247 3-112 (152)
22 COG4976 Predicted methyltransf 99.6 2.6E-17 5.7E-22 141.9 0.4 195 100-307 86-287 (287)
23 PRK11873 arsM arsenite S-adeno 99.6 3.2E-15 6.9E-20 136.2 14.0 138 147-288 76-231 (272)
24 PLN02336 phosphoethanolamine N 99.6 2.6E-15 5.6E-20 147.2 14.0 138 147-288 265-415 (475)
25 PRK08317 hypothetical protein; 99.6 1E-14 2.3E-19 129.0 15.0 137 147-287 18-176 (241)
26 PRK01683 trans-aconitate 2-met 99.6 2.6E-15 5.7E-20 135.6 11.0 97 147-247 30-132 (258)
27 KOG4300 Predicted methyltransf 99.6 4.4E-15 9.5E-20 126.4 10.7 135 149-287 77-232 (252)
28 TIGR00740 methyltransferase, p 99.6 1.5E-14 3.3E-19 129.3 14.6 94 148-246 53-162 (239)
29 PF08242 Methyltransf_12: Meth 99.6 6E-16 1.3E-20 119.3 4.3 86 153-241 1-99 (99)
30 PF12847 Methyltransf_18: Meth 99.6 5.6E-16 1.2E-20 121.7 4.2 95 148-245 1-111 (112)
31 PRK15451 tRNA cmo(5)U34 methyl 99.6 5.8E-15 1.3E-19 132.8 10.8 93 148-245 56-164 (247)
32 PRK11207 tellurite resistance 99.6 1.2E-14 2.7E-19 126.3 10.5 95 148-246 30-136 (197)
33 smart00828 PKS_MT Methyltransf 99.6 1.3E-14 2.8E-19 128.2 9.2 134 151-290 2-147 (224)
34 PF07021 MetW: Methionine bios 99.6 1.1E-14 2.4E-19 123.9 8.3 112 137-257 6-121 (193)
35 COG2230 Cfa Cyclopropane fatty 99.5 6.6E-14 1.4E-18 126.4 13.4 162 112-285 41-221 (283)
36 smart00138 MeTrc Methyltransfe 99.5 9.3E-15 2E-19 132.7 7.8 96 148-246 99-243 (264)
37 PRK00107 gidB 16S rRNA methylt 99.5 5.3E-14 1.1E-18 121.2 11.9 130 149-305 46-186 (187)
38 TIGR01934 MenG_MenH_UbiE ubiqu 99.5 1.1E-13 2.4E-18 121.5 14.1 94 148-244 39-142 (223)
39 PRK00216 ubiE ubiquinone/menaq 99.5 8.8E-14 1.9E-18 123.4 12.9 94 148-244 51-157 (239)
40 TIGR03587 Pse_Me-ase pseudamin 99.5 1.2E-13 2.6E-18 120.8 11.7 95 148-248 43-146 (204)
41 PF02353 CMAS: Mycolic acid cy 99.5 2.7E-14 5.8E-19 130.0 6.5 109 130-246 46-167 (273)
42 PF13649 Methyltransf_25: Meth 99.5 4.1E-15 8.9E-20 115.2 0.7 85 152-239 1-101 (101)
43 TIGR00477 tehB tellurite resis 99.5 5.2E-14 1.1E-18 122.2 7.4 93 148-244 30-133 (195)
44 TIGR02081 metW methionine bios 99.5 3E-13 6.5E-18 117.2 12.1 100 149-254 14-118 (194)
45 COG4106 Tam Trans-aconitate me 99.5 4.1E-14 8.8E-19 121.4 6.3 97 147-247 29-131 (257)
46 PRK11088 rrmA 23S rRNA methylt 99.5 2.3E-13 5E-18 124.0 10.9 107 131-250 71-186 (272)
47 PF08003 Methyltransf_9: Prote 99.5 1.2E-13 2.6E-18 125.1 7.9 148 137-291 106-271 (315)
48 PRK08287 cobalt-precorrin-6Y C 99.5 1.3E-12 2.8E-17 112.5 13.6 135 147-306 30-185 (187)
49 PLN02232 ubiquinone biosynthes 99.5 4.9E-13 1.1E-17 112.4 10.5 69 173-244 1-80 (160)
50 PRK04266 fibrillarin; Provisio 99.4 2.1E-12 4.5E-17 114.5 14.6 140 147-306 71-226 (226)
51 KOG1541 Predicted protein carb 99.4 6.5E-13 1.4E-17 114.3 10.4 97 148-246 50-161 (270)
52 PRK06922 hypothetical protein; 99.4 2.9E-13 6.4E-18 134.1 9.3 95 148-245 418-537 (677)
53 PRK05134 bifunctional 3-demeth 99.4 7.1E-13 1.5E-17 117.8 10.5 156 147-306 47-232 (233)
54 PRK06202 hypothetical protein; 99.4 7.9E-13 1.7E-17 117.7 10.4 96 147-246 59-168 (232)
55 PRK11705 cyclopropane fatty ac 99.4 4.1E-13 8.8E-18 128.0 8.8 104 135-246 156-268 (383)
56 PRK12335 tellurite resistance 99.4 2.3E-13 5E-18 125.0 6.8 91 149-243 121-221 (287)
57 TIGR02021 BchM-ChlM magnesium 99.4 9.7E-13 2.1E-17 116.0 8.9 105 133-243 40-156 (219)
58 KOG2361 Predicted methyltransf 99.4 9.9E-13 2.1E-17 114.7 8.5 141 104-247 30-185 (264)
59 TIGR02469 CbiT precorrin-6Y C5 99.4 1.9E-12 4.2E-17 102.9 9.4 94 147-246 18-123 (124)
60 PRK00121 trmB tRNA (guanine-N( 99.4 4.9E-13 1.1E-17 116.7 6.1 103 148-252 40-163 (202)
61 PRK00377 cbiT cobalt-precorrin 99.4 3.1E-12 6.7E-17 111.2 11.1 136 147-306 39-198 (198)
62 TIGR00138 gidB 16S rRNA methyl 99.4 1E-12 2.2E-17 112.8 7.6 90 149-246 43-143 (181)
63 TIGR01983 UbiG ubiquinone bios 99.4 6.8E-12 1.5E-16 110.7 11.8 99 148-249 45-153 (224)
64 PLN02336 phosphoethanolamine N 99.4 1.5E-12 3.2E-17 127.7 8.2 97 148-245 37-142 (475)
65 PRK13944 protein-L-isoaspartat 99.3 4.9E-12 1.1E-16 110.6 10.3 91 147-246 71-174 (205)
66 TIGR00091 tRNA (guanine-N(7)-) 99.3 2E-12 4.3E-17 112.2 6.6 99 149-250 17-137 (194)
67 PTZ00146 fibrillarin; Provisio 99.3 2.6E-11 5.7E-16 110.4 14.0 161 131-306 114-287 (293)
68 PLN02585 magnesium protoporphy 99.3 8.5E-12 1.8E-16 115.7 10.5 91 148-246 144-250 (315)
69 PLN03075 nicotianamine synthas 99.3 1E-11 2.3E-16 113.4 10.0 95 148-246 123-234 (296)
70 TIGR03840 TMPT_Se_Te thiopurin 99.3 8.8E-12 1.9E-16 109.6 9.2 94 148-244 34-151 (213)
71 PRK11188 rrmJ 23S rRNA methylt 99.3 1.8E-11 4E-16 107.3 10.9 95 147-247 50-167 (209)
72 PF05401 NodS: Nodulation prot 99.3 3.2E-12 6.9E-17 109.2 5.7 128 148-288 43-180 (201)
73 PRK14967 putative methyltransf 99.3 4.3E-11 9.4E-16 105.9 13.2 97 147-247 35-161 (223)
74 PRK07402 precorrin-6B methylas 99.3 5.3E-11 1.2E-15 103.2 13.2 102 137-247 31-144 (196)
75 PRK14901 16S rRNA methyltransf 99.3 4.2E-11 9.1E-16 116.2 13.8 145 147-307 251-434 (434)
76 PF03848 TehB: Tellurite resis 99.3 4.2E-12 9E-17 109.3 6.0 93 148-244 30-132 (192)
77 TIGR02716 C20_methyl_CrtF C-20 99.3 2.1E-11 4.5E-16 113.0 11.0 92 147-244 148-253 (306)
78 TIGR00537 hemK_rel_arch HemK-r 99.3 1.8E-11 4E-16 104.6 8.9 93 149-246 20-141 (179)
79 PRK09489 rsmC 16S ribosomal RN 99.3 2.4E-11 5.3E-16 114.1 10.0 94 149-247 197-305 (342)
80 PRK15001 SAM-dependent 23S rib 99.3 2.7E-11 5.9E-16 114.8 10.0 106 135-246 217-341 (378)
81 PF05175 MTS: Methyltransferas 99.2 4.1E-11 8.9E-16 101.7 9.9 95 149-247 32-142 (170)
82 PRK07580 Mg-protoporphyrin IX 99.2 2.2E-11 4.8E-16 107.7 8.6 87 148-240 63-161 (230)
83 KOG3010 Methyltransferase [Gen 99.2 2.4E-11 5.2E-16 106.2 7.9 93 150-243 35-135 (261)
84 PRK13942 protein-L-isoaspartat 99.2 5E-11 1.1E-15 104.8 9.9 91 147-246 75-177 (212)
85 TIGR03438 probable methyltrans 99.2 5E-11 1.1E-15 110.3 10.4 120 131-257 50-189 (301)
86 TIGR00536 hemK_fam HemK family 99.2 1.5E-10 3.2E-15 106.3 12.9 94 150-247 116-246 (284)
87 PRK10901 16S rRNA methyltransf 99.2 2.1E-10 4.6E-15 111.1 14.1 143 147-305 243-426 (427)
88 TIGR00080 pimt protein-L-isoas 99.2 8.4E-11 1.8E-15 103.5 10.0 92 147-247 76-179 (215)
89 TIGR00563 rsmB ribosomal RNA s 99.2 2.3E-10 5.1E-15 110.8 14.0 98 147-247 237-370 (426)
90 PRK13255 thiopurine S-methyltr 99.2 6.4E-11 1.4E-15 104.5 9.0 94 148-244 37-155 (218)
91 TIGR00438 rrmJ cell division p 99.2 1.4E-10 3.1E-15 99.9 10.6 95 147-247 31-148 (188)
92 COG4123 Predicted O-methyltran 99.2 3.6E-10 7.9E-15 100.5 12.4 140 148-308 44-215 (248)
93 TIGR01177 conserved hypothetic 99.2 1.3E-10 2.8E-15 108.9 9.9 99 147-248 181-297 (329)
94 PRK14966 unknown domain/N5-glu 99.2 8.1E-11 1.8E-15 112.0 8.6 95 149-246 252-382 (423)
95 TIGR03534 RF_mod_PrmC protein- 99.2 2.9E-10 6.2E-15 101.9 11.8 117 149-287 88-241 (251)
96 PRK14121 tRNA (guanine-N(7)-)- 99.2 1.2E-10 2.6E-15 110.2 9.5 101 148-251 122-241 (390)
97 PRK14904 16S rRNA methyltransf 99.2 2E-10 4.4E-15 111.8 11.3 156 147-308 249-445 (445)
98 TIGR00406 prmA ribosomal prote 99.2 2.5E-10 5.5E-15 105.0 11.0 91 148-246 159-260 (288)
99 TIGR03533 L3_gln_methyl protei 99.1 3.2E-10 6.8E-15 104.1 10.8 95 149-247 122-253 (284)
100 PF03291 Pox_MCEL: mRNA cappin 99.1 9.7E-11 2.1E-15 109.3 7.0 104 148-251 62-192 (331)
101 PRK00517 prmA ribosomal protei 99.1 1.9E-10 4.2E-15 103.6 8.2 93 148-246 119-214 (250)
102 cd02440 AdoMet_MTases S-adenos 99.1 2.4E-10 5.3E-15 86.2 7.3 91 151-244 1-103 (107)
103 PF13659 Methyltransf_26: Meth 99.1 3.5E-11 7.6E-16 95.1 2.7 94 149-246 1-116 (117)
104 PRK09328 N5-glutamine S-adenos 99.1 1.7E-09 3.6E-14 98.4 14.0 96 147-246 107-239 (275)
105 PRK14903 16S rRNA methyltransf 99.1 7E-10 1.5E-14 107.5 11.7 98 147-247 236-368 (431)
106 PRK14902 16S rRNA methyltransf 99.1 1.4E-09 3E-14 105.9 13.7 156 147-307 249-444 (444)
107 PRK11805 N5-glutamine S-adenos 99.1 4.8E-10 1E-14 104.0 9.4 94 150-247 135-265 (307)
108 KOG2940 Predicted methyltransf 99.1 2.5E-10 5.5E-15 99.0 6.9 96 149-247 73-176 (325)
109 PRK14968 putative methyltransf 99.1 4.1E-10 8.9E-15 96.3 8.2 95 148-246 23-149 (188)
110 PRK00312 pcm protein-L-isoaspa 99.1 4.9E-10 1.1E-14 98.3 8.7 91 147-246 77-176 (212)
111 TIGR00446 nop2p NOL1/NOP2/sun 99.1 1.6E-09 3.5E-14 98.4 11.8 156 147-305 70-264 (264)
112 KOG1975 mRNA cap methyltransfe 99.0 3.6E-10 7.8E-15 102.5 5.8 110 148-257 117-249 (389)
113 COG2242 CobL Precorrin-6B meth 99.0 8.3E-09 1.8E-13 87.6 13.6 94 147-247 33-137 (187)
114 TIGR03704 PrmC_rel_meth putati 99.0 3.1E-09 6.8E-14 95.8 11.2 153 72-246 30-217 (251)
115 COG2813 RsmC 16S RNA G1207 met 99.0 3.4E-09 7.3E-14 96.4 11.1 105 135-246 147-267 (300)
116 PRK01544 bifunctional N5-gluta 99.0 1.9E-09 4.2E-14 106.4 10.4 94 149-246 139-270 (506)
117 KOG1271 Methyltransferases [Ge 99.0 6.7E-10 1.4E-14 93.2 5.6 116 131-249 48-185 (227)
118 PF05148 Methyltransf_8: Hypot 98.9 1.3E-09 2.8E-14 94.0 5.8 85 149-244 73-157 (219)
119 PF01739 CheR: CheR methyltran 98.9 9.6E-10 2.1E-14 95.3 4.3 96 148-246 31-176 (196)
120 PHA03411 putative methyltransf 98.9 3.3E-09 7.1E-14 95.8 7.7 97 149-249 65-187 (279)
121 PRK13943 protein-L-isoaspartat 98.9 4.2E-09 9.1E-14 98.0 8.5 90 147-245 79-180 (322)
122 PRK13256 thiopurine S-methyltr 98.9 6.9E-09 1.5E-13 91.7 9.3 95 148-245 43-164 (226)
123 PRK00811 spermidine synthase; 98.9 4.8E-09 1E-13 96.2 8.0 98 148-247 76-193 (283)
124 PRK04457 spermidine synthase; 98.9 2.8E-09 6E-14 96.7 6.3 96 148-246 66-178 (262)
125 PF06325 PrmA: Ribosomal prote 98.9 3.3E-09 7.2E-14 97.4 6.6 99 134-244 151-258 (295)
126 COG2264 PrmA Ribosomal protein 98.9 4.7E-09 1E-13 95.8 7.2 90 148-244 162-262 (300)
127 PRK01581 speE spermidine synth 98.8 1.5E-08 3.3E-13 94.9 9.3 98 149-248 151-271 (374)
128 PF05219 DREV: DREV methyltran 98.8 9.5E-09 2.1E-13 91.5 7.4 94 148-245 94-188 (265)
129 smart00650 rADc Ribosomal RNA 98.8 3.4E-08 7.3E-13 83.6 10.0 118 147-274 12-138 (169)
130 COG2519 GCD14 tRNA(1-methylade 98.8 2.5E-08 5.3E-13 88.4 9.3 137 146-308 92-254 (256)
131 KOG2899 Predicted methyltransf 98.8 1.7E-08 3.7E-13 88.5 7.7 142 147-288 57-258 (288)
132 PRK10611 chemotaxis methyltran 98.8 1.5E-08 3.2E-13 92.8 7.3 95 149-246 116-263 (287)
133 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.8 1.2E-08 2.6E-13 91.7 6.4 168 130-305 38-256 (256)
134 PLN02781 Probable caffeoyl-CoA 98.8 2.1E-08 4.5E-13 89.6 7.5 91 149-244 69-177 (234)
135 PF01135 PCMT: Protein-L-isoas 98.8 8.4E-09 1.8E-13 90.4 4.7 91 147-246 71-173 (209)
136 PRK03612 spermidine synthase; 98.7 1.7E-08 3.6E-13 100.2 7.4 98 148-248 297-418 (521)
137 TIGR00417 speE spermidine synt 98.7 2E-08 4.3E-13 91.5 7.2 98 149-248 73-189 (270)
138 KOG3045 Predicted RNA methylas 98.7 5.4E-08 1.2E-12 86.1 9.3 85 149-246 181-265 (325)
139 KOG2904 Predicted methyltransf 98.7 8.4E-08 1.8E-12 85.5 10.2 98 149-248 149-288 (328)
140 COG2890 HemK Methylase of poly 98.7 2.2E-08 4.9E-13 91.6 6.7 91 151-246 113-239 (280)
141 COG2518 Pcm Protein-L-isoaspar 98.7 2.9E-08 6.2E-13 86.0 7.0 91 147-246 71-170 (209)
142 PRK11783 rlmL 23S rRNA m(2)G24 98.7 2.2E-08 4.9E-13 102.6 6.5 96 149-246 539-657 (702)
143 KOG1331 Predicted methyltransf 98.7 4.6E-08 9.9E-13 87.9 7.4 92 149-244 46-142 (293)
144 PF06080 DUF938: Protein of un 98.7 2.4E-07 5.3E-12 80.2 11.7 155 133-292 13-197 (204)
145 PHA03412 putative methyltransf 98.7 4.6E-08 1E-12 86.6 7.2 88 149-240 50-158 (241)
146 PF00891 Methyltransf_2: O-met 98.7 8.6E-08 1.9E-12 85.7 9.0 90 148-244 100-198 (241)
147 COG1352 CheR Methylase of chem 98.7 6.9E-08 1.5E-12 87.4 7.8 95 149-246 97-242 (268)
148 PF05891 Methyltransf_PK: AdoM 98.6 7.4E-08 1.6E-12 83.9 6.7 137 148-292 55-206 (218)
149 PF03141 Methyltransf_29: Puta 98.6 2.6E-08 5.7E-13 95.8 3.6 97 148-246 117-220 (506)
150 PRK15128 23S rRNA m(5)C1962 me 98.6 8.7E-08 1.9E-12 91.8 7.1 96 149-247 221-341 (396)
151 KOG1269 SAM-dependent methyltr 98.6 8E-08 1.7E-12 90.6 6.4 96 146-244 108-214 (364)
152 PLN02366 spermidine synthase 98.6 2.6E-07 5.6E-12 85.6 9.4 98 148-247 91-208 (308)
153 PF02390 Methyltransf_4: Putat 98.6 9.9E-08 2.1E-12 82.8 5.6 98 150-250 19-138 (195)
154 PF05724 TPMT: Thiopurine S-me 98.5 9.9E-08 2.1E-12 84.2 5.5 96 147-245 36-156 (218)
155 PRK13168 rumA 23S rRNA m(5)U19 98.5 2.3E-07 4.9E-12 90.5 7.7 110 131-246 282-401 (443)
156 PRK10909 rsmD 16S rRNA m(2)G96 98.5 3E-07 6.5E-12 80.0 7.6 97 149-248 54-162 (199)
157 PLN02672 methionine S-methyltr 98.5 6.1E-07 1.3E-11 94.7 11.2 97 149-247 119-280 (1082)
158 PF11968 DUF3321: Putative met 98.5 9.2E-07 2E-11 76.9 10.1 91 149-249 52-153 (219)
159 PF12147 Methyltransf_20: Puta 98.5 1.1E-06 2.4E-11 79.5 10.8 99 147-245 134-249 (311)
160 COG4122 Predicted O-methyltran 98.5 3.2E-07 6.8E-12 80.6 6.6 92 148-244 59-165 (219)
161 COG2521 Predicted archaeal met 98.5 5.4E-07 1.2E-11 78.8 7.8 128 147-287 133-277 (287)
162 COG0500 SmtA SAM-dependent met 98.5 1.2E-06 2.5E-11 69.7 9.3 93 152-248 52-158 (257)
163 PRK03522 rumB 23S rRNA methylu 98.5 5.1E-07 1.1E-11 84.1 8.1 109 131-247 158-276 (315)
164 PF10294 Methyltransf_16: Puta 98.4 3E-07 6.6E-12 78.2 5.5 99 147-248 44-159 (173)
165 PLN02476 O-methyltransferase 98.4 5.8E-07 1.3E-11 81.8 7.4 91 149-244 119-227 (278)
166 PF01596 Methyltransf_3: O-met 98.4 8E-07 1.7E-11 77.7 7.5 102 133-244 35-154 (205)
167 PRK11933 yebU rRNA (cytosine-C 98.4 2.7E-06 5.8E-11 83.2 11.1 158 147-307 112-308 (470)
168 KOG3987 Uncharacterized conser 98.4 1.3E-07 2.8E-12 81.1 1.2 95 147-245 111-207 (288)
169 COG1041 Predicted DNA modifica 98.3 1.8E-06 3.9E-11 80.1 8.7 97 147-246 196-311 (347)
170 TIGR00479 rumA 23S rRNA (uraci 98.3 1.4E-06 3.1E-11 84.5 7.7 109 129-245 275-396 (431)
171 KOG1661 Protein-L-isoaspartate 98.3 2.1E-06 4.5E-11 74.0 6.8 107 127-246 65-194 (237)
172 TIGR00478 tly hemolysin TlyA f 98.3 8.9E-06 1.9E-10 72.2 10.7 131 147-287 74-217 (228)
173 COG0144 Sun tRNA and rRNA cyto 98.3 2.4E-05 5.2E-10 74.1 14.3 98 147-247 155-290 (355)
174 TIGR02085 meth_trns_rumB 23S r 98.2 4.2E-06 9.1E-11 79.8 8.1 112 127-246 214-335 (374)
175 PRK04148 hypothetical protein; 98.2 4E-06 8.7E-11 68.0 6.6 79 134-216 4-85 (134)
176 PF01170 UPF0020: Putative RNA 98.2 3.3E-06 7.1E-11 72.3 6.4 98 147-248 27-153 (179)
177 PF08704 GCD14: tRNA methyltra 98.2 3E-06 6.5E-11 76.0 6.3 94 146-247 38-148 (247)
178 COG4627 Uncharacterized protei 98.2 1.5E-06 3.2E-11 71.4 3.7 56 200-255 39-96 (185)
179 PLN02589 caffeoyl-CoA O-methyl 98.1 4.4E-06 9.4E-11 75.1 6.2 102 133-244 69-189 (247)
180 PLN02823 spermine synthase 98.1 9.7E-06 2.1E-10 76.0 8.8 95 149-246 104-221 (336)
181 PRK00274 ksgA 16S ribosomal RN 98.1 2.9E-06 6.3E-11 77.4 5.2 68 147-217 41-114 (272)
182 TIGR00095 RNA methyltransferas 98.1 1.3E-05 2.8E-10 69.2 8.2 110 130-247 36-161 (189)
183 PRK14896 ksgA 16S ribosomal RN 98.1 5.4E-06 1.2E-10 75.1 6.0 68 147-219 28-102 (258)
184 COG0220 Predicted S-adenosylme 98.1 4.2E-06 9.1E-11 74.2 5.1 99 150-251 50-170 (227)
185 COG1092 Predicted SAM-dependen 98.1 2.9E-06 6.3E-11 80.7 4.3 99 149-249 218-340 (393)
186 COG2263 Predicted RNA methylas 98.1 4.2E-06 9E-11 71.2 4.8 82 147-234 44-136 (198)
187 KOG1499 Protein arginine N-met 98.1 2.8E-06 6.2E-11 78.5 3.9 94 147-244 59-166 (346)
188 KOG3420 Predicted RNA methylas 98.1 1E-05 2.2E-10 65.9 6.5 70 147-219 47-125 (185)
189 TIGR03439 methyl_EasF probable 98.0 5.9E-05 1.3E-09 70.2 11.1 124 132-259 64-211 (319)
190 COG3963 Phospholipid N-methylt 98.0 4.4E-05 9.6E-10 63.7 8.3 94 147-243 47-154 (194)
191 PRK01544 bifunctional N5-gluta 97.9 1.6E-05 3.4E-10 78.8 6.5 100 147-249 346-466 (506)
192 PF04672 Methyltransf_19: S-ad 97.9 8.7E-05 1.9E-09 66.9 9.7 157 150-306 70-267 (267)
193 KOG2352 Predicted spermine/spe 97.9 4E-05 8.6E-10 73.9 7.5 93 150-245 50-162 (482)
194 PF05185 PRMT5: PRMT5 arginine 97.8 1.2E-05 2.6E-10 78.2 3.8 90 149-242 187-294 (448)
195 TIGR00755 ksgA dimethyladenosi 97.8 6.2E-05 1.3E-09 67.9 8.0 66 147-217 28-103 (253)
196 PRK04338 N(2),N(2)-dimethylgua 97.8 5.2E-05 1.1E-09 72.5 7.6 92 149-247 58-160 (382)
197 PF03602 Cons_hypoth95: Conser 97.8 7.5E-06 1.6E-10 70.3 1.7 115 127-248 25-156 (183)
198 PF01269 Fibrillarin: Fibrilla 97.8 0.0004 8.6E-09 60.9 12.3 160 131-305 55-227 (229)
199 PRK11727 23S rRNA mA1618 methy 97.8 2.5E-05 5.4E-10 72.7 4.9 72 148-219 114-200 (321)
200 PF01564 Spermine_synth: Sperm 97.8 4.4E-05 9.5E-10 68.7 6.1 99 148-248 76-194 (246)
201 PTZ00338 dimethyladenosine tra 97.8 2.6E-05 5.6E-10 72.0 4.5 67 147-218 35-111 (294)
202 PF07942 N2227: N2227-like pro 97.8 8.8E-05 1.9E-09 67.3 7.8 106 132-240 38-197 (270)
203 PF10672 Methyltrans_SAM: S-ad 97.7 1.1E-05 2.3E-10 73.9 1.6 98 149-248 124-241 (286)
204 PF09243 Rsm22: Mitochondrial 97.7 9.7E-05 2.1E-09 67.5 7.4 98 147-248 32-143 (274)
205 PRK00536 speE spermidine synth 97.7 7.4E-05 1.6E-09 67.6 5.9 91 148-249 72-175 (262)
206 PF02527 GidB: rRNA small subu 97.7 5.6E-05 1.2E-09 64.9 4.8 86 151-244 51-147 (184)
207 KOG3178 Hydroxyindole-O-methyl 97.6 0.0003 6.6E-09 65.3 9.5 88 149-244 178-274 (342)
208 KOG3191 Predicted N6-DNA-methy 97.6 0.00088 1.9E-08 56.8 11.2 98 149-250 44-173 (209)
209 PF02384 N6_Mtase: N-6 DNA Met 97.6 7.4E-05 1.6E-09 69.3 5.0 109 135-248 35-186 (311)
210 COG0421 SpeE Spermidine syntha 97.6 0.00018 4E-09 65.8 7.4 95 150-247 78-192 (282)
211 PF02475 Met_10: Met-10+ like- 97.6 5.5E-05 1.2E-09 65.8 3.7 88 147-242 100-199 (200)
212 TIGR02143 trmA_only tRNA (urac 97.6 0.00014 3.1E-09 68.8 6.5 105 131-246 183-312 (353)
213 PRK05031 tRNA (uracil-5-)-meth 97.5 0.00019 4.1E-09 68.2 6.8 108 128-246 189-321 (362)
214 COG1889 NOP1 Fibrillarin-like 97.5 0.0035 7.5E-08 54.1 13.4 159 132-305 59-229 (231)
215 PF01728 FtsJ: FtsJ-like methy 97.5 7.3E-05 1.6E-09 63.8 3.2 97 148-247 23-141 (181)
216 COG0293 FtsJ 23S rRNA methylas 97.5 0.00066 1.4E-08 59.0 8.6 109 133-246 32-160 (205)
217 KOG1709 Guanidinoacetate methy 97.4 0.00036 7.7E-09 60.6 6.5 94 147-242 100-203 (271)
218 COG0742 N6-adenine-specific me 97.4 0.00024 5.2E-09 60.8 5.1 113 129-248 28-157 (187)
219 KOG1663 O-methyltransferase [S 97.3 0.0011 2.3E-08 58.3 7.6 90 149-244 74-182 (237)
220 PRK11783 rlmL 23S rRNA m(2)G24 97.2 0.00066 1.4E-08 70.0 6.6 74 171-247 258-349 (702)
221 KOG1500 Protein arginine N-met 97.2 0.00058 1.3E-08 63.0 5.1 96 146-246 175-283 (517)
222 PF03141 Methyltransf_29: Puta 97.1 0.0054 1.2E-07 59.7 11.4 92 149-244 366-466 (506)
223 TIGR00308 TRM1 tRNA(guanine-26 97.1 0.0003 6.6E-09 67.0 2.8 90 149-245 45-147 (374)
224 PF03059 NAS: Nicotianamine sy 97.1 0.00058 1.2E-08 62.2 4.4 95 149-246 121-231 (276)
225 COG2265 TrmA SAM-dependent met 97.1 0.003 6.6E-08 61.3 9.3 118 127-253 274-403 (432)
226 COG1189 Predicted rRNA methyla 97.0 0.01 2.2E-07 52.5 11.6 154 147-307 78-244 (245)
227 PRK00050 16S rRNA m(4)C1402 me 97.0 0.00079 1.7E-08 62.1 4.8 67 147-216 18-98 (296)
228 COG2520 Predicted methyltransf 97.0 0.002 4.4E-08 60.3 7.0 89 149-244 189-288 (341)
229 KOG3201 Uncharacterized conser 96.9 0.00022 4.9E-09 59.2 0.3 99 149-248 30-143 (201)
230 COG0357 GidB Predicted S-adeno 96.9 0.0044 9.4E-08 54.5 8.4 135 149-306 68-213 (215)
231 KOG2915 tRNA(1-methyladenosine 96.9 0.01 2.2E-07 53.5 10.5 130 146-306 103-249 (314)
232 TIGR02987 met_A_Alw26 type II 96.8 0.0022 4.8E-08 63.9 6.2 68 148-215 31-119 (524)
233 PF07091 FmrO: Ribosomal RNA m 96.8 0.0026 5.6E-08 56.8 5.8 110 135-250 93-213 (251)
234 COG0030 KsgA Dimethyladenosine 96.8 0.0028 6E-08 57.2 5.9 67 147-216 29-103 (259)
235 PF06859 Bin3: Bicoid-interact 96.7 0.0022 4.8E-08 49.9 4.3 91 208-300 1-107 (110)
236 COG4262 Predicted spermidine s 96.7 0.0049 1.1E-07 57.7 7.2 98 148-248 289-410 (508)
237 PF09445 Methyltransf_15: RNA 96.6 0.00026 5.7E-09 59.4 -1.5 98 151-254 2-128 (163)
238 COG0116 Predicted N6-adenine-s 96.6 0.0054 1.2E-07 58.0 7.0 72 172-246 257-345 (381)
239 PF01189 Nol1_Nop2_Fmu: NOL1/N 96.6 0.0017 3.7E-08 59.6 3.5 98 147-247 84-221 (283)
240 COG3897 Predicted methyltransf 96.6 0.0032 7E-08 54.1 4.7 96 147-249 78-183 (218)
241 PF03269 DUF268: Caenorhabditi 96.6 0.00085 1.8E-08 55.8 1.1 97 149-247 2-113 (177)
242 PRK11760 putative 23S rRNA C24 96.6 0.012 2.5E-07 55.2 8.7 105 133-244 191-304 (357)
243 PF08123 DOT1: Histone methyla 96.5 0.00072 1.6E-08 59.1 0.3 95 147-246 41-158 (205)
244 KOG0820 Ribosomal RNA adenine 96.5 0.004 8.7E-08 56.1 4.9 65 146-215 56-130 (315)
245 PF05958 tRNA_U5-meth_tr: tRNA 96.4 0.0046 1E-07 58.6 5.2 67 127-196 178-253 (352)
246 KOG2187 tRNA uracil-5-methyltr 96.4 0.0059 1.3E-07 59.5 5.6 113 129-247 366-492 (534)
247 KOG2730 Methylase [General fun 96.1 0.0049 1.1E-07 53.9 3.2 67 149-215 95-172 (263)
248 PF13679 Methyltransf_32: Meth 96.0 0.019 4.2E-07 46.9 6.1 88 147-243 24-129 (141)
249 KOG1122 tRNA and rRNA cytosine 95.8 0.017 3.8E-07 55.0 5.8 98 146-247 239-373 (460)
250 PF04989 CmcI: Cephalosporin h 95.8 0.018 3.9E-07 50.2 5.4 130 149-281 33-184 (206)
251 COG4798 Predicted methyltransf 95.8 0.029 6.3E-07 48.3 6.4 97 146-246 46-167 (238)
252 COG4076 Predicted RNA methylas 95.7 0.022 4.7E-07 48.8 5.5 90 149-243 33-133 (252)
253 KOG1596 Fibrillarin and relate 95.6 0.35 7.6E-06 43.1 12.5 156 127-292 134-300 (317)
254 KOG2798 Putative trehalase [Ca 95.4 0.036 7.7E-07 51.0 5.9 110 133-242 133-293 (369)
255 PF13578 Methyltransf_24: Meth 95.2 0.0053 1.1E-07 47.3 0.0 89 153-244 1-104 (106)
256 PF11599 AviRa: RRNA methyltra 95.2 0.044 9.5E-07 47.9 5.5 101 147-248 50-217 (246)
257 KOG2793 Putative N2,N2-dimethy 95.1 0.054 1.2E-06 48.6 6.1 99 149-247 87-201 (248)
258 PF06962 rRNA_methylase: Putat 95.0 0.078 1.7E-06 43.4 6.2 70 171-245 1-92 (140)
259 PF00398 RrnaAD: Ribosomal RNA 94.8 0.2 4.4E-06 45.3 9.3 119 148-274 30-159 (262)
260 PLN02668 indole-3-acetate carb 94.8 0.25 5.5E-06 47.2 10.2 45 204-248 158-240 (386)
261 COG5459 Predicted rRNA methyla 94.7 0.08 1.7E-06 49.5 6.3 105 147-252 112-233 (484)
262 KOG4589 Cell division protein 94.6 0.18 3.9E-06 43.2 7.6 93 147-244 68-183 (232)
263 COG0275 Predicted S-adenosylme 94.5 0.3 6.6E-06 44.9 9.5 41 147-187 22-66 (314)
264 KOG3115 Methyltransferase-like 94.5 0.11 2.4E-06 45.1 6.2 37 148-184 60-99 (249)
265 TIGR01444 fkbM_fam methyltrans 94.5 0.022 4.7E-07 46.2 1.9 46 151-196 1-57 (143)
266 PRK09424 pntA NAD(P) transhydr 94.2 0.15 3.2E-06 50.7 7.4 99 147-245 163-286 (509)
267 PF05971 Methyltransf_10: Prot 94.0 0.049 1.1E-06 50.3 3.3 73 149-221 103-190 (299)
268 KOG2920 Predicted methyltransf 93.6 0.048 1E-06 49.5 2.5 94 147-243 115-232 (282)
269 COG1064 AdhP Zn-dependent alco 93.5 0.15 3.3E-06 47.8 5.7 93 146-246 164-261 (339)
270 COG3129 Predicted SAM-dependen 93.4 0.23 5E-06 44.0 6.2 91 130-220 60-165 (292)
271 PF04816 DUF633: Family of unk 93.4 0.17 3.7E-06 44.2 5.5 88 152-244 1-100 (205)
272 KOG2198 tRNA cytosine-5-methyl 92.8 0.24 5.1E-06 46.7 5.8 102 146-247 153-298 (375)
273 KOG0822 Protein kinase inhibit 92.5 0.39 8.5E-06 47.3 7.0 107 133-243 351-476 (649)
274 PF10237 N6-adenineMlase: Prob 92.2 1.6 3.4E-05 36.7 9.6 110 128-246 9-124 (162)
275 TIGR00006 S-adenosyl-methyltra 92.2 0.24 5.1E-06 46.0 5.0 66 147-215 19-99 (305)
276 KOG0024 Sorbitol dehydrogenase 91.3 0.36 7.7E-06 44.9 5.0 94 146-245 167-273 (354)
277 cd08283 FDH_like_1 Glutathione 91.2 0.85 1.8E-05 43.4 7.9 97 147-244 183-305 (386)
278 COG0286 HsdM Type I restrictio 90.7 0.97 2.1E-05 44.8 7.9 111 135-249 175-330 (489)
279 COG4301 Uncharacterized conser 90.6 1.3 2.8E-05 39.8 7.6 96 149-246 79-194 (321)
280 PRK11524 putative methyltransf 90.1 0.2 4.3E-06 45.9 2.4 55 189-246 9-81 (284)
281 PRK13699 putative methylase; P 90.0 0.22 4.8E-06 44.2 2.5 52 190-244 3-71 (227)
282 PF06016 Reovirus_L2: Reovirus 89.8 0.73 1.6E-05 49.8 6.4 98 149-249 823-931 (1289)
283 TIGR00561 pntA NAD(P) transhyd 89.8 0.41 9E-06 47.5 4.4 96 147-242 162-281 (511)
284 COG1255 Uncharacterized protei 89.5 0.88 1.9E-05 35.8 5.1 85 149-244 14-101 (129)
285 COG1063 Tdh Threonine dehydrog 89.3 0.99 2.1E-05 42.6 6.5 90 149-247 169-272 (350)
286 PRK10742 putative methyltransf 89.1 0.33 7.3E-06 43.5 2.9 68 151-220 91-176 (250)
287 PRK09880 L-idonate 5-dehydroge 88.5 0.88 1.9E-05 42.5 5.5 90 147-243 168-264 (343)
288 COG2384 Predicted SAM-dependen 87.4 1.2 2.5E-05 39.3 5.1 91 149-244 17-119 (226)
289 PF01861 DUF43: Protein of unk 87.3 1.5 3.3E-05 39.1 5.8 98 148-248 44-152 (243)
290 KOG2539 Mitochondrial/chloropl 86.4 1.1 2.3E-05 43.7 4.7 97 147-243 199-313 (491)
291 KOG1099 SAM-dependent methyltr 86.3 0.8 1.7E-05 40.6 3.5 93 149-244 42-162 (294)
292 KOG2352 Predicted spermine/spe 86.1 1.7 3.6E-05 42.6 5.8 98 149-247 296-418 (482)
293 COG0686 Ald Alanine dehydrogen 85.4 1 2.2E-05 41.7 3.9 92 148-242 167-265 (371)
294 PF03686 UPF0146: Uncharacteri 85.3 1.3 2.8E-05 35.6 3.9 96 134-244 4-101 (127)
295 TIGR00027 mthyl_TIGR00027 meth 85.2 7.6 0.00016 35.1 9.5 97 149-248 82-200 (260)
296 PF02005 TRM: N2,N2-dimethylgu 84.8 0.56 1.2E-05 44.9 2.0 93 149-247 50-156 (377)
297 PF04445 SAM_MT: Putative SAM- 84.1 0.28 6.2E-06 43.6 -0.3 69 150-220 77-163 (234)
298 PF07757 AdoMet_MTase: Predict 83.7 1.1 2.3E-05 35.0 2.8 32 147-178 57-89 (112)
299 PHA01634 hypothetical protein 83.6 2.6 5.6E-05 34.1 4.9 68 147-214 27-98 (156)
300 PF14740 DUF4471: Domain of un 82.3 2.4 5.2E-05 39.0 4.9 36 207-247 221-256 (289)
301 COG1867 TRM1 N2,N2-dimethylgua 81.7 1.9 4.1E-05 40.8 4.1 92 149-246 53-155 (380)
302 cd08254 hydroxyacyl_CoA_DH 6-h 81.5 5.2 0.00011 36.6 7.1 90 147-244 164-262 (338)
303 KOG1562 Spermidine synthase [A 80.8 4.4 9.6E-05 37.4 6.0 97 147-245 120-236 (337)
304 cd00315 Cyt_C5_DNA_methylase C 80.6 1.4 3E-05 40.2 2.9 63 151-216 2-70 (275)
305 PF01795 Methyltransf_5: MraW 80.6 1.4 3E-05 41.0 2.8 65 147-214 19-99 (310)
306 PRK01747 mnmC bifunctional tRN 80.2 1.8 3.8E-05 44.6 3.7 51 190-242 150-203 (662)
307 cd08237 ribitol-5-phosphate_DH 79.0 5.6 0.00012 37.1 6.4 88 147-243 162-254 (341)
308 TIGR02822 adh_fam_2 zinc-bindi 77.3 8 0.00017 35.9 6.9 85 147-243 164-252 (329)
309 PRK11524 putative methyltransf 76.2 1.5 3.2E-05 40.2 1.7 43 147-189 207-250 (284)
310 TIGR01202 bchC 2-desacetyl-2-h 75.3 9.2 0.0002 35.1 6.7 82 148-243 144-229 (308)
311 PF11899 DUF3419: Protein of u 74.1 4.3 9.3E-05 38.9 4.2 54 189-244 277-333 (380)
312 KOG4058 Uncharacterized conser 74.1 3.2 6.9E-05 34.4 2.8 74 147-225 71-155 (199)
313 KOG1269 SAM-dependent methyltr 73.0 14 0.0003 35.2 7.3 95 147-244 179-312 (364)
314 KOG2671 Putative RNA methylase 72.7 4.6 0.0001 38.0 3.9 98 146-246 206-355 (421)
315 PF11312 DUF3115: Protein of u 71.7 1.2 2.6E-05 41.2 -0.1 53 189-244 177-241 (315)
316 PF00107 ADH_zinc_N: Zinc-bind 71.5 7.7 0.00017 30.3 4.6 69 169-244 14-88 (130)
317 TIGR00497 hsdM type I restrict 71.4 20 0.00044 35.6 8.4 98 148-247 217-357 (501)
318 cd08230 glucose_DH Glucose deh 70.7 7.9 0.00017 36.1 5.2 87 147-243 171-267 (355)
319 TIGR03451 mycoS_dep_FDH mycoth 70.5 18 0.00038 33.9 7.5 88 147-243 175-274 (358)
320 cd05188 MDR Medium chain reduc 69.6 13 0.00029 32.4 6.2 91 147-244 133-231 (271)
321 PF01555 N6_N4_Mtase: DNA meth 68.6 3.9 8.4E-05 35.2 2.4 40 147-186 190-230 (231)
322 COG0270 Dcm Site-specific DNA 68.3 7.6 0.00016 36.3 4.4 91 149-244 3-115 (328)
323 PRK13699 putative methylase; P 68.0 2.6 5.7E-05 37.3 1.2 42 147-188 162-204 (227)
324 PF02636 Methyltransf_28: Puta 66.0 9 0.0002 34.3 4.3 36 149-184 19-65 (252)
325 cd08232 idonate-5-DH L-idonate 63.4 25 0.00053 32.3 6.9 88 148-243 165-260 (339)
326 cd08281 liver_ADH_like1 Zinc-d 63.2 26 0.00056 33.0 7.1 88 147-243 190-288 (371)
327 PF10354 DUF2431: Domain of un 63.1 13 0.00029 31.2 4.5 45 204-248 71-128 (166)
328 PF03492 Methyltransf_7: SAM d 62.8 5.9 0.00013 37.3 2.6 20 203-222 102-121 (334)
329 TIGR03366 HpnZ_proposed putati 62.7 22 0.00048 31.9 6.3 88 148-243 120-216 (280)
330 cd00401 AdoHcyase S-adenosyl-L 62.5 17 0.00036 35.3 5.6 85 147-244 200-288 (413)
331 PF03514 GRAS: GRAS domain fam 62.3 18 0.00038 34.6 5.8 99 147-245 109-244 (374)
332 COG3510 CmcI Cephalosporin hyd 61.5 20 0.00043 31.1 5.2 97 148-247 69-182 (237)
333 cd05278 FDH_like Formaldehyde 60.7 22 0.00048 32.7 6.1 90 147-243 166-265 (347)
334 cd05213 NAD_bind_Glutamyl_tRNA 60.1 12 0.00027 34.6 4.2 96 148-251 177-278 (311)
335 PLN02740 Alcohol dehydrogenase 59.8 36 0.00078 32.2 7.4 89 147-243 197-298 (381)
336 COG1565 Uncharacterized conser 59.1 11 0.00024 35.7 3.7 37 149-185 78-125 (370)
337 KOG2651 rRNA adenine N-6-methy 58.3 16 0.00034 35.1 4.4 55 130-186 137-193 (476)
338 PF01555 N6_N4_Mtase: DNA meth 57.7 5.2 0.00011 34.4 1.2 25 223-247 34-58 (231)
339 cd08239 THR_DH_like L-threonin 56.8 41 0.00089 30.9 7.2 89 147-243 162-260 (339)
340 cd08234 threonine_DH_like L-th 56.3 44 0.00096 30.4 7.2 88 147-243 158-255 (334)
341 PF06460 NSP13: Coronavirus NS 55.7 20 0.00044 32.5 4.5 101 146-254 59-178 (299)
342 KOG1253 tRNA methyltransferase 55.0 4.5 9.8E-05 39.8 0.3 97 147-247 108-218 (525)
343 PF10571 UPF0547: Uncharacteri 54.5 6.3 0.00014 22.4 0.8 22 27-48 1-22 (26)
344 cd08255 2-desacetyl-2-hydroxye 53.8 36 0.00079 30.1 6.1 87 147-243 96-188 (277)
345 PLN02827 Alcohol dehydrogenase 53.3 41 0.00089 31.8 6.6 89 147-243 192-293 (378)
346 PRK10309 galactitol-1-phosphat 52.3 67 0.0015 29.7 7.8 89 147-243 159-258 (347)
347 KOG2078 tRNA modification enzy 52.2 8.7 0.00019 37.2 1.7 40 148-187 249-289 (495)
348 COG3315 O-Methyltransferase in 52.1 70 0.0015 29.6 7.7 96 149-246 93-210 (297)
349 PTZ00357 methyltransferase; Pr 51.9 22 0.00047 36.9 4.5 87 150-240 702-830 (1072)
350 COG1062 AdhC Zn-dependent alco 51.4 36 0.00078 32.2 5.6 95 147-247 184-288 (366)
351 PF02153 PDH: Prephenate dehyd 50.5 13 0.00028 33.4 2.6 66 166-241 8-75 (258)
352 COG0677 WecC UDP-N-acetyl-D-ma 50.4 2.5E+02 0.0054 27.3 11.4 99 150-248 10-131 (436)
353 cd08285 NADP_ADH NADP(H)-depen 49.8 73 0.0016 29.4 7.7 89 147-243 165-264 (351)
354 PRK02318 mannitol-1-phosphate 49.5 1.7E+02 0.0037 27.8 10.2 135 150-291 1-164 (381)
355 cd08242 MDR_like Medium chain 48.8 60 0.0013 29.4 6.8 87 147-243 154-243 (319)
356 COG2933 Predicted SAM-dependen 48.8 2.2E+02 0.0047 26.2 10.1 116 116-238 172-296 (358)
357 PRK05708 2-dehydropantoate 2-r 47.2 82 0.0018 29.0 7.4 92 149-243 2-102 (305)
358 PF09538 FYDLN_acid: Protein o 47.0 8.8 0.00019 30.0 0.8 23 25-47 7-33 (108)
359 PRK08306 dipicolinate synthase 47.0 29 0.00063 31.9 4.4 84 148-242 151-238 (296)
360 TIGR00518 alaDH alanine dehydr 46.4 9 0.00019 36.5 0.9 95 148-242 166-264 (370)
361 cd08245 CAD Cinnamyl alcohol d 45.7 67 0.0015 29.2 6.6 89 147-243 161-254 (330)
362 COG5379 BtaA S-adenosylmethion 45.5 42 0.00092 31.1 5.0 74 183-259 303-386 (414)
363 TIGR00006 S-adenosyl-methyltra 45.5 13 0.00029 34.5 1.9 27 221-247 216-243 (305)
364 cd08238 sorbose_phosphate_red 45.0 65 0.0014 30.8 6.7 91 147-243 174-286 (410)
365 PF11899 DUF3419: Protein of u 44.9 30 0.00066 33.2 4.2 38 147-184 34-72 (380)
366 TIGR02819 fdhA_non_GSH formald 44.5 1.1E+02 0.0024 29.2 8.1 98 147-246 184-301 (393)
367 cd08300 alcohol_DH_class_III c 43.8 1E+02 0.0022 28.8 7.7 89 147-243 185-286 (368)
368 PRK05476 S-adenosyl-L-homocyst 43.2 39 0.00085 32.9 4.7 84 148-244 211-298 (425)
369 cd01842 SGNH_hydrolase_like_5 42.6 55 0.0012 28.0 5.0 44 204-247 46-101 (183)
370 PF05430 Methyltransf_30: S-ad 42.5 9.6 0.00021 30.4 0.4 52 189-243 33-88 (124)
371 TIGR03201 dearomat_had 6-hydro 42.5 87 0.0019 29.0 7.0 89 147-243 165-270 (349)
372 COG0287 TyrA Prephenate dehydr 42.3 59 0.0013 29.8 5.5 86 149-241 3-94 (279)
373 KOG4451 Uncharacterized conser 42.0 8.4 0.00018 33.9 -0.0 38 11-48 234-271 (286)
374 PF00145 DNA_methylase: C-5 cy 41.7 5.3 0.00012 36.5 -1.4 61 151-215 2-68 (335)
375 TIGR00936 ahcY adenosylhomocys 41.7 49 0.0011 32.1 5.1 85 147-244 193-281 (406)
376 PRK07502 cyclohexadienyl dehyd 41.6 61 0.0013 29.7 5.7 84 150-242 7-97 (307)
377 COG4017 Uncharacterized protei 40.8 1.6E+02 0.0035 25.7 7.5 88 147-248 43-132 (254)
378 TIGR02818 adh_III_F_hyde S-(hy 40.7 98 0.0021 29.0 7.1 92 147-246 184-289 (368)
379 COG1748 LYS9 Saccharopine dehy 39.9 22 0.00048 34.2 2.5 66 150-216 2-76 (389)
380 PRK05786 fabG 3-ketoacyl-(acyl 39.7 64 0.0014 27.7 5.3 96 149-244 5-134 (238)
381 PRK00050 16S rRNA m(4)C1402 me 39.6 19 0.00041 33.3 1.9 27 221-247 212-239 (296)
382 cd08231 MDR_TM0436_like Hypoth 39.3 1.2E+02 0.0027 28.0 7.4 87 148-243 177-278 (361)
383 PLN03154 putative allyl alcoho 38.9 1.2E+02 0.0025 28.3 7.2 89 147-243 157-256 (348)
384 PLN02586 probable cinnamyl alc 38.7 64 0.0014 30.3 5.4 89 148-243 183-276 (360)
385 cd08278 benzyl_alcohol_DH Benz 37.0 1.1E+02 0.0024 28.6 6.7 89 147-243 185-283 (365)
386 PRK08324 short chain dehydroge 36.8 57 0.0012 33.7 5.1 97 148-244 421-556 (681)
387 cd08294 leukotriene_B4_DH_like 36.5 1.7E+02 0.0036 26.4 7.8 88 147-243 142-239 (329)
388 cd08261 Zn_ADH7 Alcohol dehydr 36.2 1.3E+02 0.0027 27.5 6.9 90 147-243 158-256 (337)
389 cd08298 CAD2 Cinnamyl alcohol 35.2 1.3E+02 0.0029 27.2 6.9 85 147-243 166-254 (329)
390 PF08351 DUF1726: Domain of un 34.4 45 0.00098 25.1 2.9 47 206-255 9-55 (92)
391 cd08277 liver_alcohol_DH_like 34.3 1.5E+02 0.0033 27.6 7.3 89 147-243 183-284 (365)
392 cd08266 Zn_ADH_like1 Alcohol d 34.1 1.6E+02 0.0035 26.4 7.2 88 147-243 165-263 (342)
393 PF05050 Methyltransf_21: Meth 33.8 34 0.00074 27.5 2.4 31 154-184 1-38 (167)
394 PRK06035 3-hydroxyacyl-CoA deh 33.7 48 0.001 30.2 3.6 36 150-185 4-42 (291)
395 cd08301 alcohol_DH_plants Plan 33.5 1.6E+02 0.0035 27.4 7.3 89 147-243 186-287 (369)
396 PF06690 DUF1188: Protein of u 33.3 2.2E+02 0.0048 25.6 7.4 98 135-248 30-129 (252)
397 PRK10669 putative cation:proto 33.2 97 0.0021 31.1 6.0 93 150-247 418-517 (558)
398 PF05711 TylF: Macrocin-O-meth 33.1 78 0.0017 28.5 4.7 23 225-247 192-214 (248)
399 PRK00045 hemA glutamyl-tRNA re 33.1 63 0.0014 31.3 4.5 98 147-249 180-283 (423)
400 TIGR02825 B4_12hDH leukotriene 32.7 2.1E+02 0.0044 26.0 7.7 89 147-243 137-235 (325)
401 KOG1227 Putative methyltransfe 32.4 29 0.00063 32.2 1.8 84 149-240 195-290 (351)
402 PRK07530 3-hydroxybutyryl-CoA 32.4 62 0.0014 29.4 4.1 89 150-246 5-120 (292)
403 PRK05562 precorrin-2 dehydroge 32.1 1.2E+02 0.0027 26.8 5.7 64 148-216 24-93 (223)
404 PRK07417 arogenate dehydrogena 32.0 68 0.0015 29.0 4.3 87 151-246 2-91 (279)
405 PRK05225 ketol-acid reductoiso 31.8 45 0.00097 32.9 3.1 87 148-244 35-130 (487)
406 KOG0022 Alcohol dehydrogenase, 31.3 48 0.001 31.1 3.1 91 147-247 191-297 (375)
407 PRK09260 3-hydroxybutyryl-CoA 30.9 24 0.00051 32.2 1.1 90 151-247 3-119 (288)
408 TIGR02300 FYDLN_acid conserved 30.8 24 0.00051 28.3 0.9 24 25-48 7-34 (129)
409 COG0569 TrkA K+ transport syst 30.6 56 0.0012 28.7 3.4 66 150-215 1-73 (225)
410 KOG1501 Arginine N-methyltrans 30.6 24 0.00052 34.5 1.1 39 149-187 67-107 (636)
411 PF01795 Methyltransf_5: MraW 30.5 20 0.00044 33.3 0.6 25 222-246 218-243 (310)
412 PF07101 DUF1363: Protein of u 30.1 18 0.00038 27.5 0.1 16 151-166 5-20 (124)
413 PRK09496 trkA potassium transp 29.5 80 0.0017 30.4 4.6 70 147-216 229-305 (453)
414 PRK07819 3-hydroxybutyryl-CoA 29.4 92 0.002 28.4 4.7 89 150-246 6-122 (286)
415 PLN02178 cinnamyl-alcohol dehy 29.2 98 0.0021 29.3 5.0 88 148-243 178-271 (375)
416 PF04072 LCM: Leucine carboxyl 29.1 1.5E+02 0.0032 25.0 5.6 73 150-222 80-171 (183)
417 PF00837 T4_deiodinase: Iodoth 29.0 1.6E+02 0.0036 26.3 5.9 31 45-77 99-129 (237)
418 PF02558 ApbA: Ketopantoate re 28.9 41 0.00088 27.0 2.1 88 152-244 1-100 (151)
419 PTZ00075 Adenosylhomocysteinas 28.8 68 0.0015 31.8 3.8 85 147-244 252-340 (476)
420 PF15629 Perm-CXXC: Permuted s 28.7 22 0.00048 21.3 0.3 11 24-34 14-24 (32)
421 PRK03659 glutathione-regulated 28.6 1.8E+02 0.0039 29.7 7.0 94 149-247 400-500 (601)
422 cd08286 FDH_like_ADH2 formalde 28.6 2.3E+02 0.0049 25.9 7.3 89 147-243 165-264 (345)
423 PRK00398 rpoP DNA-directed RNA 28.2 26 0.00055 22.5 0.6 23 28-50 5-31 (46)
424 cd05285 sorbitol_DH Sorbitol d 27.8 2.5E+02 0.0055 25.6 7.5 90 147-243 161-263 (343)
425 PRK08265 short chain dehydroge 27.8 84 0.0018 27.7 4.1 69 149-217 6-89 (261)
426 COG2910 Putative NADH-flavin r 27.8 99 0.0021 26.8 4.2 88 151-239 2-96 (211)
427 PRK10458 DNA cytosine methylas 27.6 1.1E+02 0.0024 30.2 5.1 47 149-196 88-143 (467)
428 PF02254 TrkA_N: TrkA-N domain 27.6 1.1E+02 0.0023 23.2 4.2 76 169-249 21-100 (116)
429 cd08295 double_bond_reductase_ 27.6 2.3E+02 0.0051 25.8 7.2 89 147-243 150-249 (338)
430 PRK07806 short chain dehydroge 27.2 3E+02 0.0065 23.6 7.5 96 149-244 6-133 (248)
431 PRK11064 wecC UDP-N-acetyl-D-m 26.8 2.8E+02 0.0061 26.8 7.7 96 150-245 4-119 (415)
432 TIGR00872 gnd_rel 6-phosphoglu 26.8 71 0.0015 29.2 3.5 90 151-247 2-94 (298)
433 COG5379 BtaA S-adenosylmethion 26.7 76 0.0017 29.5 3.5 40 147-186 62-102 (414)
434 PF13248 zf-ribbon_3: zinc-rib 26.3 33 0.00071 19.2 0.7 20 27-46 3-22 (26)
435 cd08293 PTGR2 Prostaglandin re 26.3 2.1E+02 0.0045 26.2 6.6 85 149-243 155-252 (345)
436 PRK03562 glutathione-regulated 26.1 2.2E+02 0.0048 29.2 7.2 91 149-244 400-497 (621)
437 cd08236 sugar_DH NAD(P)-depend 25.9 2.7E+02 0.0058 25.4 7.3 90 147-243 158-256 (343)
438 TIGR00692 tdh L-threonine 3-de 25.9 3E+02 0.0064 25.2 7.6 88 147-243 160-259 (340)
439 PRK15057 UDP-glucose 6-dehydro 25.5 2.7E+02 0.0059 26.7 7.3 36 151-187 2-40 (388)
440 cd08233 butanediol_DH_like (2R 25.4 2.9E+02 0.0063 25.4 7.4 88 147-243 171-270 (351)
441 cd08274 MDR9 Medium chain dehy 25.2 3.1E+02 0.0066 25.0 7.5 86 147-242 176-270 (350)
442 PRK09496 trkA potassium transp 25.2 1.7E+02 0.0038 28.1 6.1 94 150-246 1-100 (453)
443 PF12692 Methyltransf_17: S-ad 25.1 1.1E+02 0.0024 25.4 3.9 108 133-245 16-134 (160)
444 cd08265 Zn_ADH3 Alcohol dehydr 25.0 2.7E+02 0.0059 26.1 7.2 89 147-243 202-305 (384)
445 PRK08293 3-hydroxybutyryl-CoA 24.5 54 0.0012 29.8 2.2 93 150-243 4-118 (287)
446 PF01558 POR: Pyruvate ferredo 24.1 1.4E+02 0.0031 24.6 4.6 33 207-247 56-88 (173)
447 TIGR00675 dcm DNA-methyltransf 23.8 45 0.00097 31.0 1.6 61 152-215 1-66 (315)
448 cd08241 QOR1 Quinone oxidoredu 23.5 3.2E+02 0.007 24.0 7.2 88 147-243 138-236 (323)
449 cd05279 Zn_ADH1 Liver alcohol 23.5 2.4E+02 0.0052 26.3 6.5 87 147-243 182-283 (365)
450 cd01336 MDH_cytoplasmic_cytoso 23.4 2.4E+02 0.0052 26.3 6.4 32 149-180 2-44 (325)
451 TIGR02437 FadB fatty oxidation 23.4 1.1E+02 0.0024 32.0 4.5 91 150-246 314-429 (714)
452 PLN02545 3-hydroxybutyryl-CoA 23.0 95 0.0021 28.2 3.6 86 150-243 5-117 (295)
453 PRK05808 3-hydroxybutyryl-CoA 22.8 47 0.001 30.0 1.5 85 151-243 5-116 (282)
454 cd08279 Zn_ADH_class_III Class 22.6 3.6E+02 0.0078 25.0 7.5 88 147-243 181-280 (363)
455 PRK04136 rpl40e 50S ribosomal 22.0 44 0.00094 22.0 0.8 24 26-49 14-37 (48)
456 PF02318 FYVE_2: FYVE-type zin 22.0 14 0.00031 29.1 -1.9 34 25-58 78-112 (118)
457 PTZ00354 alcohol dehydrogenase 21.9 4E+02 0.0086 23.8 7.5 89 147-243 139-238 (334)
458 PLN02353 probable UDP-glucose 21.9 1.6E+02 0.0036 29.1 5.1 97 150-246 2-128 (473)
459 PRK10083 putative oxidoreducta 21.9 1.3E+02 0.0029 27.4 4.4 90 147-243 159-257 (339)
460 COG1568 Predicted methyltransf 21.9 1.3E+02 0.0029 27.8 4.0 98 147-247 151-262 (354)
461 PLN02494 adenosylhomocysteinas 21.8 82 0.0018 31.2 3.0 85 147-244 252-340 (477)
462 KOG1986 Vesicle coat complex C 21.7 45 0.00098 34.3 1.2 40 9-52 40-87 (745)
463 PLN03209 translocon at the inn 21.7 1.3E+02 0.0028 30.6 4.4 71 148-218 79-169 (576)
464 TIGR02441 fa_ox_alpha_mit fatt 21.7 1E+02 0.0022 32.4 3.8 89 150-246 336-451 (737)
465 PF08484 Methyltransf_14: C-me 21.6 2.5E+02 0.0055 23.3 5.5 87 149-246 68-160 (160)
466 PLN02702 L-idonate 5-dehydroge 21.6 3.6E+02 0.0077 25.0 7.3 90 147-243 180-283 (364)
467 PF03119 DNA_ligase_ZBD: NAD-d 21.6 33 0.00072 19.8 0.1 12 28-39 1-12 (28)
468 cd05281 TDH Threonine dehydrog 21.5 2.6E+02 0.0056 25.6 6.2 88 147-243 162-260 (341)
469 PRK07066 3-hydroxybutyryl-CoA 21.5 80 0.0017 29.5 2.8 96 150-246 8-120 (321)
470 PF07279 DUF1442: Protein of u 21.4 1.9E+02 0.004 25.6 4.8 88 148-244 41-147 (218)
471 cd08282 PFDH_like Pseudomonas 21.3 4.7E+02 0.01 24.4 8.0 94 147-243 175-283 (375)
472 KOG1098 Putative SAM-dependent 21.1 64 0.0014 33.0 2.1 95 147-244 43-157 (780)
473 PRK05396 tdh L-threonine 3-deh 21.1 3.2E+02 0.0069 24.9 6.8 88 148-244 163-262 (341)
474 TIGR01035 hemA glutamyl-tRNA r 20.9 1.2E+02 0.0025 29.4 3.9 97 147-249 178-280 (417)
475 PRK11823 DNA repair protein Ra 20.9 41 0.00088 33.0 0.7 27 27-53 8-34 (446)
476 PRK08267 short chain dehydroge 20.8 1.9E+02 0.0041 25.2 5.0 68 151-218 3-87 (260)
477 PRK12921 2-dehydropantoate 2-r 20.5 3.2E+02 0.007 24.5 6.6 93 150-247 1-103 (305)
478 cd08296 CAD_like Cinnamyl alco 20.5 1.1E+02 0.0023 28.1 3.4 89 147-243 162-257 (333)
479 PRK06522 2-dehydropantoate 2-r 20.5 2.4E+02 0.0053 25.3 5.8 92 151-247 2-101 (304)
480 cd08263 Zn_ADH10 Alcohol dehyd 20.4 3.6E+02 0.0079 24.9 7.1 88 147-243 186-285 (367)
481 PF02737 3HCDH_N: 3-hydroxyacy 20.3 1.1E+02 0.0023 25.9 3.0 87 152-246 2-115 (180)
No 1
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.90 E-value=1.3e-23 Score=185.78 Aligned_cols=140 Identities=28% Similarity=0.446 Sum_probs=108.8
Q ss_pred hcchhhhhhhCCCCCCCCCCChhHHhhccCCCCcccccCCcccccCCHHHHHHHHHHHHhhCCCCCCCCCeEEEECCCcc
Q 021661 81 QRGAVEQVLKDVQWPEQFPFKEEDFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWV 160 (309)
Q Consensus 81 ~~~~v~~v~~~~~w~~~~p~~~e~f~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g 160 (309)
++..|.++|.+.+ .+||..++-+.++.++. |.+.+...+.. .++.+|||||||+|
T Consensus 9 k~~~v~~vF~~ia------------~~YD~~n~~~S~g~~~~-----------Wr~~~i~~~~~--~~g~~vLDva~GTG 63 (238)
T COG2226 9 KQEKVQKVFDKVA------------KKYDLMNDLMSFGLHRL-----------WRRALISLLGI--KPGDKVLDVACGTG 63 (238)
T ss_pred cHHHHHHHHHhhH------------HHHHhhcccccCcchHH-----------HHHHHHHhhCC--CCCCEEEEecCCcc
Confidence 3456778888777 55666555544444333 23333343332 36899999999999
Q ss_pred hhc---cCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEeccchhccCCHHHHHH
Q 021661 161 SHF---PPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFK 229 (309)
Q Consensus 161 ~~~---~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~~~~l~ 229 (309)
... ....+.++|+|+|+|+.||+.|+++ ++|+++|+ ++||++|++||+|+++++|++++|++++|+
T Consensus 64 d~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dA---e~LPf~D~sFD~vt~~fglrnv~d~~~aL~ 140 (238)
T COG2226 64 DMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDA---ENLPFPDNSFDAVTISFGLRNVTDIDKALK 140 (238)
T ss_pred HHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEech---hhCCCCCCccCEEEeeehhhcCCCHHHHHH
Confidence 543 3334578999999999999998764 67999999 999999999999999999999999999999
Q ss_pred HHHhhcccCcE-EEEEecCc
Q 021661 230 EMCQVLKPGGL-AIVSFSNR 248 (309)
Q Consensus 230 ~i~rvLkpGG~-lii~~~~~ 248 (309)
|++|+|||||. +++++.++
T Consensus 141 E~~RVlKpgG~~~vle~~~p 160 (238)
T COG2226 141 EMYRVLKPGGRLLVLEFSKP 160 (238)
T ss_pred HHHHhhcCCeEEEEEEcCCC
Confidence 99999999995 57777764
No 2
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.87 E-value=1.5e-22 Score=180.20 Aligned_cols=99 Identities=30% Similarity=0.455 Sum_probs=72.5
Q ss_pred CCCCeEEEECCCcchhc---c-CCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHF---P-PGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~-~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.++.+|||+|||+|... . ...+.++|+|+|+|++|++.|++ +++++++|+ +++|+++++||+|++
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da---~~lp~~d~sfD~v~~ 122 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDA---EDLPFPDNSFDAVTC 122 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BT---TB--S-TT-EEEEEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCH---HHhcCCCCceeEEEH
Confidence 45889999999999543 2 23456899999999999998875 489999999 999999999999999
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEE-EEEecCc
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLA-IVSFSNR 248 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~l-ii~~~~~ 248 (309)
.++|++++|+.++|+|++|+|||||.+ ++++..+
T Consensus 123 ~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p 157 (233)
T PF01209_consen 123 SFGLRNFPDRERALREMYRVLKPGGRLVILEFSKP 157 (233)
T ss_dssp ES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-
T ss_pred HhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCC
Confidence 999999999999999999999999965 6676654
No 3
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.87 E-value=4.1e-22 Score=174.09 Aligned_cols=167 Identities=20% Similarity=0.317 Sum_probs=131.8
Q ss_pred hhhhcccCcchhhHHHhhcchhhhhhhCCCCCCCCCCChhHHhhccCCCCcccccCCcccccCCHHHHHHHHHHHHhhCC
Q 021661 64 MTMAGTLGANSLIASARQRGAVEQVLKDVQWPEQFPFKEEDFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFP 143 (309)
Q Consensus 64 ~~~~g~~~~r~~~~~~~~~~~v~~v~~~~~w~~~~p~~~e~f~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~~~~~l~ 143 (309)
.++..+|||+++.+ .+++.-|.++|.+++ .+||..+|.+....+|.| .+.+...+.
T Consensus 42 ~~~~Thfgf~tV~e-~eke~~V~~vF~~vA------------~~YD~mND~mSlGiHRlW-----------Kd~~v~~L~ 97 (296)
T KOG1540|consen 42 ASKCTHFGFKTVRE-SEKERLVHHVFESVA------------KKYDIMNDAMSLGIHRLW-----------KDMFVSKLG 97 (296)
T ss_pred ccccccccccccch-hhhhhHHHHHHHHHH------------HHHHHHHHHhhcchhHHH-----------HHHhhhccC
Confidence 34566779999988 777888999999987 678888887755555544 566666666
Q ss_pred CCCCCCCeEEEECCCcchhccC----CC-----CCCeEEEEeCCHHHHhhCCCC-----------CcEEEecCCCCCCCC
Q 021661 144 PSNTPGVSILDLCSSWVSHFPP----GY-----KQDRIVGMGMNEEELKRNPVL-----------TEYVVQDLNLNPKLP 203 (309)
Q Consensus 144 ~~~~~~~~ILDiGcG~g~~~~~----~~-----~~~~v~giD~S~~~l~~a~~~-----------i~~~~~D~~~~~~lp 203 (309)
+ .+++++||+|||+|..... .. ...+|+.+|+|++||..++++ +.|+++|+ ++||
T Consensus 98 p--~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dA---E~Lp 172 (296)
T KOG1540|consen 98 P--GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDA---EDLP 172 (296)
T ss_pred C--CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCc---ccCC
Confidence 4 5679999999999943221 11 237999999999999987653 68999999 9999
Q ss_pred CCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcE-EEEEecCc--chhHHHhhhhh
Q 021661 204 FEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGL-AIVSFSNR--CFWTKAISIWT 259 (309)
Q Consensus 204 ~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~-lii~~~~~--~~~~~~~~~w~ 259 (309)
|++++||..++.+.|...+|++++|+|++|+|||||. ++++++.- ..+...++.|.
T Consensus 173 Fdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ys 231 (296)
T KOG1540|consen 173 FDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYS 231 (296)
T ss_pred CCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhh
Confidence 9999999999999999999999999999999999995 58888763 24444444443
No 4
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.81 E-value=6.3e-19 Score=159.76 Aligned_cols=97 Identities=26% Similarity=0.384 Sum_probs=82.6
Q ss_pred CCCCeEEEECCCcchhcc---CC-CCCCeEEEEeCCHHHHhhCCC-----------CCcEEEecCCCCCCCCCCCCceeE
Q 021661 147 TPGVSILDLCSSWVSHFP---PG-YKQDRIVGMGMNEEELKRNPV-----------LTEYVVQDLNLNPKLPFEDNSFDV 211 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~---~~-~~~~~v~giD~S~~~l~~a~~-----------~i~~~~~D~~~~~~lp~~~~sfDl 211 (309)
.++.+|||||||+|.... .. .+.++|+|+|+|++|++.|++ +++++++|+ +++|+++++||+
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~---~~lp~~~~sfD~ 148 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDA---TDLPFDDCYFDA 148 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccc---ccCCCCCCCEeE
Confidence 457899999999996432 22 345799999999999998753 367999999 899999999999
Q ss_pred EEeccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 212 ITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 212 Vis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
|+++++++|++++.+++++++|+|||||.+++...
T Consensus 149 V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 149 ITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred EEEecccccCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 99999999999999999999999999998766543
No 5
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.81 E-value=1e-19 Score=168.93 Aligned_cols=158 Identities=18% Similarity=0.276 Sum_probs=114.9
Q ss_pred CCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEecc
Q 021661 147 TPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 216 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis~~ 216 (309)
.++.+|||||||+|... ..+..+.+|+|+|+|++|++.|++ +++++++|+ +++++++++||+|++..
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~da---e~l~~~~~~FD~Vi~~~ 206 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTA---EKLADEGRKFDAVLSLE 206 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCH---HHhhhccCCCCEEEEhh
Confidence 35679999999999643 233457799999999999998763 377899998 88888788999999999
Q ss_pred chhccCCHHHHHHHHHhhcccCcEEEEEecCcchh---H-----HHhhhhhcCCCC--ch---hHhHHHHHHHhCCCCCC
Q 021661 217 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFW---T-----KAISIWTSTGDA--DH---VMIVGAYFHYAGGYEPP 283 (309)
Q Consensus 217 vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~---~-----~~~~~w~~~~~~--~h---~~~~~~~f~~~~Gf~~~ 283 (309)
+|+|+.|+..+++++.++|||||.+++++.++... . ..+..|...+.. .. ..-+.+.+ ..+||+..
T Consensus 207 vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL-~~aGf~i~ 285 (322)
T PLN02396 207 VIEHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMIL-QRASVDVK 285 (322)
T ss_pred HHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHH-HHcCCeEE
Confidence 99999999999999999999999999998886431 1 112233322211 11 12223334 56999988
Q ss_pred ceeeccCCCCC--------CCCcEEEEEEeCCC
Q 021661 284 QAVDISPNPGR--------SDPMYVVYSRKAST 308 (309)
Q Consensus 284 ~~~~~~~~~~~--------~~p~~~v~a~k~~~ 308 (309)
++..+.-+|.. .+--|++.++|..+
T Consensus 286 ~~~G~~~~p~~~~w~~~~~~~~ny~~~~~k~~~ 318 (322)
T PLN02396 286 EMAGFVYNPITGRWLLSDDISVNYIAYGTKRKD 318 (322)
T ss_pred EEeeeEEcCcCCeEEecCCCceeehhheecCcc
Confidence 88777544421 22338888888754
No 6
>PLN02244 tocopherol O-methyltransferase
Probab=99.80 E-value=5.9e-19 Score=165.73 Aligned_cols=141 Identities=16% Similarity=0.107 Sum_probs=101.0
Q ss_pred CCCCeEEEECCCcchhccCC--CCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEec
Q 021661 147 TPGVSILDLCSSWVSHFPPG--YKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~--~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis~ 215 (309)
.++.+|||||||+|...... ..+.+|+|+|+|+.|++.+++ +++++++|+ .++|+++++||+|++.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~---~~~~~~~~~FD~V~s~ 193 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADA---LNQPFEDGQFDLVWSM 193 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCc---ccCCCCCCCccEEEEC
Confidence 45789999999999543221 126799999999999987654 378999999 8899999999999999
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEEEecCc-c----------hhHHHhhhhhcCC---CCchhHhHHHHHHHhCCCC
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR-C----------FWTKAISIWTSTG---DADHVMIVGAYFHYAGGYE 281 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~-~----------~~~~~~~~w~~~~---~~~h~~~~~~~f~~~~Gf~ 281 (309)
.+++|++|+.+++++++|+|||||.++|..... . .....+....... ......-+.+.+ +++||.
T Consensus 194 ~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l-~~aGf~ 272 (340)
T PLN02244 194 ESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLA-ESLGLQ 272 (340)
T ss_pred CchhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHH-HHCCCC
Confidence 999999999999999999999999888764321 0 0111111111111 111223333444 569999
Q ss_pred CCceeeccCC
Q 021661 282 PPQAVDISPN 291 (309)
Q Consensus 282 ~~~~~~~~~~ 291 (309)
.+++.+++..
T Consensus 273 ~v~~~d~s~~ 282 (340)
T PLN02244 273 DIKTEDWSEH 282 (340)
T ss_pred eeEeeeCcHH
Confidence 9998887643
No 7
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.76 E-value=6.4e-19 Score=153.96 Aligned_cols=101 Identities=21% Similarity=0.380 Sum_probs=87.1
Q ss_pred CCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCCCCCceeEEEeccch
Q 021661 147 TPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVVSV 218 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~~~~sfDlVis~~vl 218 (309)
.++.+|||||||.|... ..+..+.+|+|+|+|+.+|+.|+.. +++.+..+ +++....++||+|+|..||
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~---edl~~~~~~FDvV~cmEVl 134 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATV---EDLASAGGQFDVVTCMEVL 134 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhH---HHHHhcCCCccEEEEhhHH
Confidence 35899999999999654 3445678999999999999998853 56777777 6776666899999999999
Q ss_pred hccCCHHHHHHHHHhhcccCcEEEEEecCcch
Q 021661 219 DYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCF 250 (309)
Q Consensus 219 ~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~ 250 (309)
+|++||+.+++.+.+.+||||.++++++|+.+
T Consensus 135 EHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ 166 (243)
T COG2227 135 EHVPDPESFLRACAKLVKPGGILFLSTINRTL 166 (243)
T ss_pred HccCCHHHHHHHHHHHcCCCcEEEEeccccCH
Confidence 99999999999999999999999999999653
No 8
>PRK05785 hypothetical protein; Provisional
Probab=99.76 E-value=3.2e-18 Score=151.90 Aligned_cols=108 Identities=22% Similarity=0.244 Sum_probs=86.7
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchhccCC-CC-CCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCCCCCce
Q 021661 132 AALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPG-YK-QDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSF 209 (309)
Q Consensus 132 ~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~-~~-~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~~~sf 209 (309)
..+.+.+....+ ++.+|||||||+|...... .. +.+|+|+|+|++|++.|+++..++++|+ +.+|+++++|
T Consensus 39 ~~~~~~l~~~~~----~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~~~~~~d~---~~lp~~d~sf 111 (226)
T PRK05785 39 AELVKTILKYCG----RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVADDKVVGSF---EALPFRDKSF 111 (226)
T ss_pred HHHHHHHHHhcC----CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhccceEEech---hhCCCCCCCE
Confidence 344444444333 2679999999999643221 11 4699999999999999998888899999 8999999999
Q ss_pred eEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 210 DVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 210 DlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
|+|+++++++|++|+++++++++|+|||. ..+++++.
T Consensus 112 D~v~~~~~l~~~~d~~~~l~e~~RvLkp~-~~ile~~~ 148 (226)
T PRK05785 112 DVVMSSFALHASDNIEKVIAEFTRVSRKQ-VGFIAMGK 148 (226)
T ss_pred EEEEecChhhccCCHHHHHHHHHHHhcCc-eEEEEeCC
Confidence 99999999999999999999999999994 44555554
No 9
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.74 E-value=2.6e-17 Score=146.15 Aligned_cols=96 Identities=28% Similarity=0.448 Sum_probs=81.4
Q ss_pred CCCCeEEEECCCcchhcc---CC-CCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHFP---PG-YKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~---~~-~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.++.+|||+|||+|.... .. .+..+|+|+|+|+.|++.+++ +++++++|+ ..+++++++||+|++
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~V~~ 120 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNA---MELPFDDNSFDYVTI 120 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEech---hcCCCCCCCccEEEE
Confidence 457899999999996432 22 356799999999999987664 368899999 778888889999999
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEEEe
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~ 245 (309)
.++++|++++.++++++.++|||||.+++..
T Consensus 121 ~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 121 GFGLRNVPDYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred ecccccCCCHHHHHHHHHHHcCcCeEEEEEE
Confidence 9999999999999999999999999887653
No 10
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.74 E-value=2.4e-18 Score=130.45 Aligned_cols=88 Identities=28% Similarity=0.453 Sum_probs=73.5
Q ss_pred EEECCCcchhcc--CCCCCCeEEEEeCCHHHHhhCCCC-----CcEEEecCCCCCCCCCCCCceeEEEeccchhccCCHH
Q 021661 153 LDLCSSWVSHFP--PGYKQDRIVGMGMNEEELKRNPVL-----TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPI 225 (309)
Q Consensus 153 LDiGcG~g~~~~--~~~~~~~v~giD~S~~~l~~a~~~-----i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~~ 225 (309)
||+|||.|.... ...+..+|+|+|+|++|++.++++ +.+.++|+ +++|+++++||+|++..+++|++++.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~---~~l~~~~~sfD~v~~~~~~~~~~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDA---EDLPFPDNSFDVVFSNSVLHHLEDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBT---TSSSS-TT-EEEEEEESHGGGSSHHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehH---HhCccccccccccccccceeeccCHH
Confidence 899999885432 222678999999999999987763 55999999 89999999999999999999999999
Q ss_pred HHHHHHHhhcccCcEEEE
Q 021661 226 EVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 226 ~~l~~i~rvLkpGG~lii 243 (309)
++++++.|+|||||.++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999876
No 11
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.74 E-value=1.9e-17 Score=149.05 Aligned_cols=125 Identities=14% Similarity=0.220 Sum_probs=99.6
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhhCCCC---CcEEEecCCCCCCCCCCC
Q 021661 131 IAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKRNPVL---TEYVVQDLNLNPKLPFED 206 (309)
Q Consensus 131 ~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~a~~~---i~~~~~D~~~~~~lp~~~ 206 (309)
...+.+.+.+.++. .++.+|||+|||+|.... ....+.+|+|+|+|+.|++.++++ ..++++|+ +.+|+++
T Consensus 27 q~~~a~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~---~~~~~~~ 101 (251)
T PRK10258 27 QRQSADALLAMLPQ--RKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAADHYLAGDI---ESLPLAT 101 (251)
T ss_pred HHHHHHHHHHhcCc--cCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCCEEEcCc---ccCcCCC
Confidence 34445555555653 346799999999995432 223467999999999999988775 57899999 8889888
Q ss_pred CceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhc
Q 021661 207 NSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTS 260 (309)
Q Consensus 207 ~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~ 260 (309)
++||+|+++.+++|..++..+|.++.++|||||.+++++.....+.+....|..
T Consensus 102 ~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~ 155 (251)
T PRK10258 102 ATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQA 155 (251)
T ss_pred CcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHH
Confidence 999999999999999999999999999999999999987766555555555543
No 12
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.70 E-value=8.1e-18 Score=140.16 Aligned_cols=131 Identities=24% Similarity=0.383 Sum_probs=94.7
Q ss_pred CCCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCCCCCceeEEEeccchhccCCHH
Q 021661 147 TPGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPI 225 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~~ 225 (309)
.++.+|||||||.|..+.. ...+.+++|+|+|+.+++. .+......+. ...+.++++||+|+|+.+|+|++|+.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~--~~~~~~~~~~---~~~~~~~~~fD~i~~~~~l~~~~d~~ 95 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK--RNVVFDNFDA---QDPPFPDGSFDLIICNDVLEHLPDPE 95 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH--TTSEEEEEEC---HTHHCHSSSEEEEEEESSGGGSSHHH
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh--hhhhhhhhhh---hhhhccccchhhHhhHHHHhhcccHH
Confidence 4588999999999855432 2234599999999999998 4455555555 44556778999999999999999999
Q ss_pred HHHHHHHhhcccCcEEEEEecCcc-hhHHHhhhhhcCCCC-chhHhHH-----HHHHHhCCCCCC
Q 021661 226 EVFKEMCQVLKPGGLAIVSFSNRC-FWTKAISIWTSTGDA-DHVMIVG-----AYFHYAGGYEPP 283 (309)
Q Consensus 226 ~~l~~i~rvLkpGG~lii~~~~~~-~~~~~~~~w~~~~~~-~h~~~~~-----~~f~~~~Gf~~~ 283 (309)
.+|+++.++|||||++++++++.. ........|...... .|..++. +++ +++||+.+
T Consensus 96 ~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll-~~~G~~iv 159 (161)
T PF13489_consen 96 EFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLL-EQAGFEIV 159 (161)
T ss_dssp HHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHH-HHTTEEEE
T ss_pred HHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHH-HHCCCEEE
Confidence 999999999999999999988753 344444445322211 3333332 234 56888754
No 13
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.70 E-value=3.5e-16 Score=145.97 Aligned_cols=154 Identities=18% Similarity=0.211 Sum_probs=111.1
Q ss_pred CCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC-----CCcEEEecCCCCCCCCCCCCceeEEEeccchh
Q 021661 148 PGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV-----LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 219 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~-----~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~ 219 (309)
++.+|||||||+|... ....+..+|+++|+|++|++.+++ +++++.+|+ +++++++++||+|+++.+++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~---e~lp~~~~sFDvVIs~~~L~ 189 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDA---EDLPFPTDYADRYVSAGSIE 189 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccH---HhCCCCCCceeEEEEcChhh
Confidence 4689999999999632 233456799999999999998765 378899999 88898889999999999999
Q ss_pred ccCCHHHHHHHHHhhcccCcEEEEEec-CcchhHHH--hhhhhcCCCCchhHhHHHHHHHhCCCCCCceeeccCCC----
Q 021661 220 YLTKPIEVFKEMCQVLKPGGLAIVSFS-NRCFWTKA--ISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNP---- 292 (309)
Q Consensus 220 ~l~d~~~~l~~i~rvLkpGG~lii~~~-~~~~~~~~--~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~~~~~---- 292 (309)
|++++..+|++++++|||||.+++..+ .+..+... .+.|.. .....-+.+++ +++||+.+++.++.+.-
T Consensus 190 ~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~---~~t~eEl~~lL-~~aGF~~V~i~~i~~~~~~~~ 265 (340)
T PLN02490 190 YWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWML---FPKEEEYIEWF-TKAGFKDVKLKRIGPKWYRGV 265 (340)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhcc---CCCHHHHHHHH-HHCCCeEEEEEEcChhhcccc
Confidence 999999999999999999998866433 23222211 122221 11223344455 55899999988875542
Q ss_pred --CCCCCcEEEEEEeCCC
Q 021661 293 --GRSDPMYVVYSRKAST 308 (309)
Q Consensus 293 --~~~~p~~~v~a~k~~~ 308 (309)
++.-+-+.|.++|+.+
T Consensus 266 ~~~~~~~~~~v~~~k~~~ 283 (340)
T PLN02490 266 RRHGLIMGCSVTGVKPAS 283 (340)
T ss_pred ccccceeeEEEEEecccc
Confidence 1112237788888754
No 14
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.69 E-value=1e-16 Score=144.69 Aligned_cols=97 Identities=11% Similarity=0.141 Sum_probs=83.3
Q ss_pred CCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCCCCCCCceeEEEeccchhccC
Q 021661 147 TPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT 222 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~ 222 (309)
.++.+|||||||+|... ....++.+|+|+|+|+.|++.+++. ++++++|+ +.++ ++++||+|+++.+++|++
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~---~~~~-~~~~fD~v~~~~~l~~~~ 103 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDV---RDWK-PKPDTDVVVSNAALQWVP 103 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcCh---hhCC-CCCCceEEEEehhhhhCC
Confidence 45789999999999543 2334678999999999999988764 89999999 6664 467899999999999999
Q ss_pred CHHHHHHHHHhhcccCcEEEEEecC
Q 021661 223 KPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 223 d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
++.+++++++++|||||.+++.++.
T Consensus 104 d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 104 EHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred CHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 9999999999999999999887654
No 15
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.67 E-value=4.9e-16 Score=141.01 Aligned_cols=140 Identities=18% Similarity=0.246 Sum_probs=101.5
Q ss_pred CCCCeEEEECCCcchhccC--CCCCCeEEEEeCCHHHHhhCCC------CCcEEEecCCCCCCCCCCCCceeEEEeccch
Q 021661 147 TPGVSILDLCSSWVSHFPP--GYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 218 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~--~~~~~~v~giD~S~~~l~~a~~------~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl 218 (309)
.++.+|||||||+|..... ...+.+|+|+|+|+.|++.+++ ++.+.++|+ ...|+++++||+|++..++
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~---~~~~~~~~~FD~V~s~~~l 127 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDI---LKKDFPENTFDMIYSRDAI 127 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCc---ccCCCCCCCeEEEEEhhhH
Confidence 4578999999998853321 1235699999999999987764 378889998 7888888999999999999
Q ss_pred hccC--CHHHHHHHHHhhcccCcEEEEEecCc---chhHHHhhhhhcC--CCCchhHhHHHHHHHhCCCCCCceeeccC
Q 021661 219 DYLT--KPIEVFKEMCQVLKPGGLAIVSFSNR---CFWTKAISIWTST--GDADHVMIVGAYFHYAGGYEPPQAVDISP 290 (309)
Q Consensus 219 ~~l~--d~~~~l~~i~rvLkpGG~lii~~~~~---~~~~~~~~~w~~~--~~~~h~~~~~~~f~~~~Gf~~~~~~~~~~ 290 (309)
+|++ ++..+|++++++|||||.+++..... ..+...+..+... .......-+.+.+ .++||+.++..+.++
T Consensus 128 ~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~aGF~~v~~~d~~~ 205 (263)
T PTZ00098 128 LHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLI-KSCNFQNVVAKDISD 205 (263)
T ss_pred HhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHH-HHCCCCeeeEEeCcH
Confidence 9986 78999999999999999988765421 1222222222211 1122334444555 569999999888654
No 16
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.66 E-value=2.1e-16 Score=139.25 Aligned_cols=137 Identities=19% Similarity=0.274 Sum_probs=99.2
Q ss_pred CCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCC--------------CcEEEecCCCCCCCCCCCCceeEEE
Q 021661 149 GVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVL--------------TEYVVQDLNLNPKLPFEDNSFDVIT 213 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~--------------i~~~~~D~~~~~~lp~~~~sfDlVi 213 (309)
+++|||+|||+|... .+++.+..|+|+|+++.|++.|++. +++...|+ +.+. +.||.|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~---E~~~---~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDV---EGLT---GKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcch---hhcc---cccceee
Confidence 588999999999654 4556688999999999999988763 45566666 4442 4599999
Q ss_pred eccchhccCCHHHHHHHHHhhcccCcEEEEEecCcch--------hHHHhhhhhcCCCCchhHhHHH-----HHHHhCCC
Q 021661 214 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCF--------WTKAISIWTSTGDADHVMIVGA-----YFHYAGGY 280 (309)
Q Consensus 214 s~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~--------~~~~~~~w~~~~~~~h~~~~~~-----~f~~~~Gf 280 (309)
|..+++|+.||..+++.+.+.|||||.++|++.|+.. +.+....|...+...-..+++. .+ .++++
T Consensus 164 csevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l-~~~~~ 242 (282)
T KOG1270|consen 164 CSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSIL-NANGA 242 (282)
T ss_pred eHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHH-HhcCc
Confidence 9999999999999999999999999999999988643 3344444444332222222222 33 34677
Q ss_pred CCCceeeccCCC
Q 021661 281 EPPQAVDISPNP 292 (309)
Q Consensus 281 ~~~~~~~~~~~~ 292 (309)
....+.+..-+|
T Consensus 243 ~v~~v~G~~y~p 254 (282)
T KOG1270|consen 243 QVNDVVGEVYNP 254 (282)
T ss_pred chhhhhcccccc
Confidence 777666665444
No 17
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.66 E-value=1e-16 Score=144.79 Aligned_cols=98 Identities=15% Similarity=0.254 Sum_probs=81.9
Q ss_pred CCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCC-CCCCceeEEEecc
Q 021661 148 PGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLP-FEDNSFDVITNVV 216 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp-~~~~sfDlVis~~ 216 (309)
++.+|||+|||+|... ..+..+.+|+|+|+|++|++.|++ +++++++|+ .+++ +.+++||+|++..
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~---~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAA---QDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCH---HHHhhhcCCCCCEEEehh
Confidence 4679999999999543 223346799999999999998764 267889998 6653 5568899999999
Q ss_pred chhccCCHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 217 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 217 vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
+++|+.++..+++++.++|||||.+++.+.+.
T Consensus 121 vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 121 VLEWVADPKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred HHHhhCCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence 99999999999999999999999998877664
No 18
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.65 E-value=2.4e-15 Score=133.34 Aligned_cols=132 Identities=20% Similarity=0.269 Sum_probs=97.2
Q ss_pred CCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCC----CCcEEEecCCCCCCCCCCCCceeEEEeccchhcc
Q 021661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPV----LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYL 221 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~----~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l 221 (309)
+.+|||||||+|.. +....+..+++++|+|+.+++.+++ ++.++++|+ ..+++++++||+|++..+++|+
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~vi~~~~l~~~ 111 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDA---EKLPLEDSSFDLIVSNLALQWC 111 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecch---hhCCCCCCceeEEEEhhhhhhc
Confidence 57999999999853 3334566789999999999987665 368999999 7888888899999999999999
Q ss_pred CCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhh-cCCCCchhHhHHHHHHHhCCCCCCce
Q 021661 222 TKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWT-STGDADHVMIVGAYFHYAGGYEPPQA 285 (309)
Q Consensus 222 ~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~-~~~~~~h~~~~~~~f~~~~Gf~~~~~ 285 (309)
.++..+++++.++|||||.+++..+...........+. ..........+.+.+.. . |..+.+
T Consensus 112 ~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-f~~~~~ 174 (240)
T TIGR02072 112 DDLSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQHGLRYLSLDELKALLKN-S-FELLTL 174 (240)
T ss_pred cCHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHHhccCCCCHHHHHHHHHH-h-cCCcEE
Confidence 99999999999999999999988766544433333332 11222223334445543 2 665543
No 19
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.65 E-value=1e-15 Score=142.64 Aligned_cols=146 Identities=16% Similarity=0.151 Sum_probs=100.3
Q ss_pred HHhhCCCCCCCCCeEEEECCCcchhccCC--CCCCeEEEEeCCHHHHhhC---------CCCCcEEEecCCCCCCCCCCC
Q 021661 138 YSEVFPPSNTPGVSILDLCSSWVSHFPPG--YKQDRIVGMGMNEEELKRN---------PVLTEYVVQDLNLNPKLPFED 206 (309)
Q Consensus 138 ~~~~l~~~~~~~~~ILDiGcG~g~~~~~~--~~~~~v~giD~S~~~l~~a---------~~~i~~~~~D~~~~~~lp~~~ 206 (309)
+...++. .++.+|||||||+|...... .....|+|+|+|+.|+.++ ..+++++.+|+ +++|+ +
T Consensus 114 l~~~l~~--l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~---e~lp~-~ 187 (322)
T PRK15068 114 VLPHLSP--LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGI---EQLPA-L 187 (322)
T ss_pred HHHhhCC--CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCH---HHCCC-c
Confidence 3444443 34789999999999654322 1234699999999988642 12488999999 88887 7
Q ss_pred CceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecC---cc----hhHHHhhhhhcCCCCchhHhHHHHHHHhCC
Q 021661 207 NSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN---RC----FWTKAISIWTSTGDADHVMIVGAYFHYAGG 279 (309)
Q Consensus 207 ~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~---~~----~~~~~~~~w~~~~~~~h~~~~~~~f~~~~G 279 (309)
++||+|+|..+++|+.++..+|++++++|||||.++++... .. .....+..+...........+...+ .++|
T Consensus 188 ~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L-~~aG 266 (322)
T PRK15068 188 KAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWL-ERAG 266 (322)
T ss_pred CCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHH-HHcC
Confidence 88999999999999999999999999999999999887421 10 1111111111111011222333344 5699
Q ss_pred CCCCceeeccC
Q 021661 280 YEPPQAVDISP 290 (309)
Q Consensus 280 f~~~~~~~~~~ 290 (309)
|+.+++++.++
T Consensus 267 F~~i~~~~~~~ 277 (322)
T PRK15068 267 FKDVRIVDVSV 277 (322)
T ss_pred CceEEEEeCCC
Confidence 99999888754
No 20
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.65 E-value=1.4e-15 Score=140.67 Aligned_cols=158 Identities=14% Similarity=0.056 Sum_probs=103.2
Q ss_pred CHHHHHHHH-HHHHhhCCCCCCCCCeEEEECCCcchhccCC-CCC-CeEEEEeCCHHHHhhCC---------CCCcEEEe
Q 021661 127 DDPAIAALT-KYYSEVFPPSNTPGVSILDLCSSWVSHFPPG-YKQ-DRIVGMGMNEEELKRNP---------VLTEYVVQ 194 (309)
Q Consensus 127 ~~~~~~~l~-~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~-~~~-~~v~giD~S~~~l~~a~---------~~i~~~~~ 194 (309)
+.+....+. ..+...+.. .++.+|||||||+|...... ..+ ..|+|+|+|+.|+.+++ .++.+...
T Consensus 101 ~~e~~s~~~~~~~l~~l~~--~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~ 178 (314)
T TIGR00452 101 DSEWRSDIKWDRVLPHLSP--LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPL 178 (314)
T ss_pred CHHHHHHHHHHHHHHhcCC--CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEEC
Confidence 344444333 223344332 45789999999999653221 223 47999999999986532 23677888
Q ss_pred cCCCCCCCCCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecC--cch-----hHHHhhhhhcCCCCchh
Q 021661 195 DLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN--RCF-----WTKAISIWTSTGDADHV 267 (309)
Q Consensus 195 D~~~~~~lp~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~--~~~-----~~~~~~~w~~~~~~~h~ 267 (309)
++ +++|.. ++||+|+|+.+++|+.++..+|++++++|||||.|++++.. ... ....+............
T Consensus 179 ~i---e~lp~~-~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~ 254 (314)
T TIGR00452 179 GI---EQLHEL-YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSV 254 (314)
T ss_pred CH---HHCCCC-CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCH
Confidence 88 777754 47999999999999999999999999999999999887432 100 11111111111111123
Q ss_pred HhHHHHHHHhCCCCCCceeeccCC
Q 021661 268 MIVGAYFHYAGGYEPPQAVDISPN 291 (309)
Q Consensus 268 ~~~~~~f~~~~Gf~~~~~~~~~~~ 291 (309)
..+..++ +++||+.+++++.+..
T Consensus 255 ~~L~~~L-~~aGF~~V~i~~~~~t 277 (314)
T TIGR00452 255 SALKNWL-EKVGFENFRILDVLKT 277 (314)
T ss_pred HHHHHHH-HHCCCeEEEEEeccCC
Confidence 3344455 5699999999887543
No 21
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.64 E-value=4.8e-16 Score=129.36 Aligned_cols=96 Identities=28% Similarity=0.457 Sum_probs=82.3
Q ss_pred CCCeEEEECCCcchhc---c-CCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCC--CCCCceeEEE
Q 021661 148 PGVSILDLCSSWVSHF---P-PGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLP--FEDNSFDVIT 213 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~-~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp--~~~~sfDlVi 213 (309)
++.+|||+|||+|... . ...+..+++|+|+|++|++.|++ +++|+++|+ .+++ ++ ++||+|+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~---~~l~~~~~-~~~D~I~ 78 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDI---EDLPQELE-EKFDIII 78 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBT---TCGCGCSS-TTEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeeh---hccccccC-CCeeEEE
Confidence 4789999999999533 3 34568899999999999998876 389999999 6676 55 7899999
Q ss_pred eccchhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 214 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 214 s~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+..+++|+.++..+++++.+.||+||.+++....
T Consensus 79 ~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999999999999999999999999998887665
No 22
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.64 E-value=2.6e-17 Score=141.92 Aligned_cols=195 Identities=19% Similarity=0.195 Sum_probs=131.8
Q ss_pred CChhHHhhccCCCCcccccCCcccccCCHHHHHHHHHHHHhhCCCCCCCCCeEEEECCCcchhccCCCC-CCeEEEEeCC
Q 021661 100 FKEEDFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGYK-QDRIVGMGMN 178 (309)
Q Consensus 100 ~~~e~f~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~~~-~~~v~giD~S 178 (309)
|.+..|+.+++.++.. .+..+.-..-..+.+.+.+.-. .+-.++||+|||+|..-...+. ..+++|+|+|
T Consensus 86 YVe~LFD~~Ae~Fd~~------LVdkL~Y~vP~~l~emI~~~~~---g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS 156 (287)
T COG4976 86 YVETLFDQYAERFDHI------LVDKLGYSVPELLAEMIGKADL---GPFRRMLDLGCGTGLTGEALRDMADRLTGVDIS 156 (287)
T ss_pred HHHHHHHHHHHHHHHH------HHHHhcCccHHHHHHHHHhccC---CccceeeecccCcCcccHhHHHHHhhccCCchh
Confidence 4566677777766543 2222222222223333333221 2357999999999976554443 4589999999
Q ss_pred HHHHhhCCCC---CcEEEecCCCCCCCC-CCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHH
Q 021661 179 EEELKRNPVL---TEYVVQDLNLNPKLP-FEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKA 254 (309)
Q Consensus 179 ~~~l~~a~~~---i~~~~~D~~~~~~lp-~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~ 254 (309)
++|+++|.++ -...++|+. ..++ ..++.||+|++..|+.++-+.+.++.-+...|+|||++.+++-.-.-+..
T Consensus 157 ~nMl~kA~eKg~YD~L~~Aea~--~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~- 233 (287)
T COG4976 157 ENMLAKAHEKGLYDTLYVAEAV--LFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGG- 233 (287)
T ss_pred HHHHHHHHhccchHHHHHHHHH--HHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCC-
Confidence 9999999886 455667762 1233 45678999999999999999999999999999999999998765222110
Q ss_pred hhhhhcCCCCchhHhHHHHHHHhCCCCCCceeeccCCCCCCCCc--EEEEEEeCC
Q 021661 255 ISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDPM--YVVYSRKAS 307 (309)
Q Consensus 255 ~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~~~~~~~~~p~--~~v~a~k~~ 307 (309)
+ .......+.|-+.|..-.-...||+.+++.+.+-+.....|. ..++|||+.
T Consensus 234 f-~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~d~g~pv~G~L~iark~~ 287 (287)
T COG4976 234 F-VLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIRRDAGEPVPGILVIARKKA 287 (287)
T ss_pred e-ecchhhhhccchHHHHHHHHhcCceEEEeecccchhhcCCCCCCceEEEecCC
Confidence 0 112233556655444433467999999999988776666665 888999874
No 23
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.64 E-value=3.2e-15 Score=136.17 Aligned_cols=138 Identities=24% Similarity=0.269 Sum_probs=99.6
Q ss_pred CCCCeEEEECCCcchhc---cC-CCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHF---PP-GYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~-~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.++.+|||||||+|... .. ..+..+|+|+|+|+.|++.+++ +++++++|+ +.+++++++||+|++
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~---~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI---EALPVADNSVDVIIS 152 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch---hhCCCCCCceeEEEE
Confidence 45889999999998532 22 2345689999999999998875 367889999 888888889999999
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEEEec-C-c---chhHHHhhhhhcC-CCCchhHhHHHHHHHhCCCCCCceeec
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS-N-R---CFWTKAISIWTST-GDADHVMIVGAYFHYAGGYEPPQAVDI 288 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~-~-~---~~~~~~~~~w~~~-~~~~h~~~~~~~f~~~~Gf~~~~~~~~ 288 (309)
+.+++|.++..+++++++++|||||.+++... . . .........|... .......-+.+.+ ..+||..+++...
T Consensus 153 ~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l-~~aGf~~v~i~~~ 231 (272)
T PRK11873 153 NCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAML-AEAGFVDITIQPK 231 (272)
T ss_pred cCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHH-HHCCCCceEEEec
Confidence 99999999999999999999999998877532 1 1 1122222334321 1112233344455 4589999877553
No 24
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.64 E-value=2.6e-15 Score=147.20 Aligned_cols=138 Identities=22% Similarity=0.268 Sum_probs=99.3
Q ss_pred CCCCeEEEECCCcchhcc--CCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSSWVSHFP--PGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~--~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
.++.+|||||||+|.... ....+.+|+|+|+|+.|++.|+++ +++.++|+ ..+++++++||+|+|..+
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~I~s~~~ 341 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADC---TKKTYPDNSFDVIYSRDT 341 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCc---ccCCCCCCCEEEEEECCc
Confidence 457899999999995321 122367999999999999987542 68999999 778888889999999999
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEEecCcc--hhHHHhh-hhhcC-CCCchhHhHHHHHHHhCCCCCCceeec
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRC--FWTKAIS-IWTST-GDADHVMIVGAYFHYAGGYEPPQAVDI 288 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~--~~~~~~~-~w~~~-~~~~h~~~~~~~f~~~~Gf~~~~~~~~ 288 (309)
++|++++..++++++++|||||.++++..... ....... .+... ........+.+.+ .++||..+++.+.
T Consensus 342 l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l-~~aGF~~i~~~d~ 415 (475)
T PLN02336 342 ILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQML-KDAGFDDVIAEDR 415 (475)
T ss_pred ccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHH-HHCCCeeeeeecc
Confidence 99999999999999999999999988754311 1111111 11111 1222344444455 5699998866654
No 25
>PRK08317 hypothetical protein; Provisional
Probab=99.62 E-value=1e-14 Score=129.02 Aligned_cols=137 Identities=24% Similarity=0.359 Sum_probs=99.4
Q ss_pred CCCCeEEEECCCcchhc---cCCC-CCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCCCCCceeEEEec
Q 021661 147 TPGVSILDLCSSWVSHF---PPGY-KQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~-~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~~~~sfDlVis~ 215 (309)
.++.+|||+|||+|... .... +..+++|+|+|+.+++.++++ +++.+.|+ ..+++++++||+|++.
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~~~~~~~D~v~~~ 94 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDA---DGLPFPDGSFDAVRSD 94 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEeccc---ccCCCCCCCceEEEEe
Confidence 45789999999998643 2222 567999999999999877553 78889998 7788888899999999
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEEEecCc----------chhHHHhhhhhcCC-CCchhHhHHHHHHHhCCCCCCc
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR----------CFWTKAISIWTSTG-DADHVMIVGAYFHYAGGYEPPQ 284 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~----------~~~~~~~~~w~~~~-~~~h~~~~~~~f~~~~Gf~~~~ 284 (309)
.+++|+.++..+++++.++|||||.+++..+.. ....+....|.... +......+.+.+ ..+||+.++
T Consensus 95 ~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~aGf~~~~ 173 (241)
T PRK08317 95 RVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLF-REAGLTDIE 173 (241)
T ss_pred chhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHH-HHcCCCcee
Confidence 999999999999999999999999888765431 12333444444322 111122333444 558998765
Q ss_pred eee
Q 021661 285 AVD 287 (309)
Q Consensus 285 ~~~ 287 (309)
...
T Consensus 174 ~~~ 176 (241)
T PRK08317 174 VEP 176 (241)
T ss_pred EEE
Confidence 433
No 26
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.62 E-value=2.6e-15 Score=135.59 Aligned_cols=97 Identities=20% Similarity=0.336 Sum_probs=82.4
Q ss_pred CCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCCC---CcEEEecCCCCCCCCCCCCceeEEEeccchhc
Q 021661 147 TPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPVL---TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 220 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~~---i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~ 220 (309)
.++.+|||||||+|... ....+..+|+|+|+|+.|++.++++ +.++.+|+ ..+. ++++||+|+++.+++|
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~---~~~~-~~~~fD~v~~~~~l~~ 105 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADI---ASWQ-PPQALDLIFANASLQW 105 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECch---hccC-CCCCccEEEEccChhh
Confidence 45789999999999543 3345678999999999999988764 77899998 5554 3468999999999999
Q ss_pred cCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 221 LTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 221 l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
++++..+++++.++|||||.++++++.
T Consensus 106 ~~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 106 LPDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 999999999999999999999988654
No 27
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.61 E-value=4.4e-15 Score=126.40 Aligned_cols=135 Identities=18% Similarity=0.333 Sum_probs=97.3
Q ss_pred CCeEEEECCCcchhccCC--CCCCeEEEEeCCHHHHhhCCCC--------C-cEEEecCCCCCCCC-CCCCceeEEEecc
Q 021661 149 GVSILDLCSSWVSHFPPG--YKQDRIVGMGMNEEELKRNPVL--------T-EYVVQDLNLNPKLP-FEDNSFDVITNVV 216 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~~--~~~~~v~giD~S~~~l~~a~~~--------i-~~~~~D~~~~~~lp-~~~~sfDlVis~~ 216 (309)
...+||||||+|..+..- .|..+||++|+|+.|-+.+.+. + .|++++. +++| ++++|+|+|++.+
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~g---e~l~~l~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADG---ENLPQLADGSYDTVVCTL 153 (252)
T ss_pred ccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeech---hcCcccccCCeeeEEEEE
Confidence 457899999999766544 3789999999999998865432 4 4999999 8998 8899999999999
Q ss_pred chhccCCHHHHHHHHHhhcccCcEEE-EEecC--cchhHHHh-----hhhhcCCCCchhHh-HHHHHHHhCCCCCCceee
Q 021661 217 SVDYLTKPIEVFKEMCQVLKPGGLAI-VSFSN--RCFWTKAI-----SIWTSTGDADHVMI-VGAYFHYAGGYEPPQAVD 287 (309)
Q Consensus 217 vl~~l~d~~~~l~~i~rvLkpGG~li-i~~~~--~~~~~~~~-----~~w~~~~~~~h~~~-~~~~f~~~~Gf~~~~~~~ 287 (309)
+|.-+.|+.+.|+++.|+|||||.++ ++-.. ..+|.... ..|.-..+..++.. ..+.+ ..+-|+..+...
T Consensus 154 vLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~ltrd~~e~L-eda~f~~~~~kr 232 (252)
T KOG4300|consen 154 VLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCVLTRDTGELL-EDAEFSIDSCKR 232 (252)
T ss_pred EEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceEEehhHHHHh-hhcccccchhhc
Confidence 99999999999999999999999665 44322 23333332 23554455555432 22233 335566544443
No 28
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.61 E-value=1.5e-14 Score=129.27 Aligned_cols=94 Identities=16% Similarity=0.300 Sum_probs=77.4
Q ss_pred CCCeEEEECCCcchhcc---CC--CCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEE
Q 021661 148 PGVSILDLCSSWVSHFP---PG--YKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVIT 213 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~---~~--~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVi 213 (309)
++.+|||||||+|.... .. .++.+|+|+|+|+.|++.|+++ ++++++|+ ..++++ .+|+|+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~--~~d~v~ 127 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDI---RHVEIK--NASMVI 127 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECCh---hhCCCC--CCCEEe
Confidence 37799999999996532 22 3678999999999999887542 68899999 777754 489999
Q ss_pred eccchhccC--CHHHHHHHHHhhcccCcEEEEEec
Q 021661 214 NVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 214 s~~vl~~l~--d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
++++++|++ +...++++++++|||||.+++...
T Consensus 128 ~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 128 LNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred eecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 999999996 457899999999999999888743
No 29
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.60 E-value=6e-16 Score=119.26 Aligned_cols=86 Identities=22% Similarity=0.297 Sum_probs=55.5
Q ss_pred EEECCCcchhcc---CCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCC-C-CCCCceeEEEeccchh
Q 021661 153 LDLCSSWVSHFP---PGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKL-P-FEDNSFDVITNVVSVD 219 (309)
Q Consensus 153 LDiGcG~g~~~~---~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~l-p-~~~~sfDlVis~~vl~ 219 (309)
||||||+|.... ...+..+++|+|+|+.|++.++++ ......+. .+. . ...++||+|++..++|
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDV---LDLFDYDPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--S---SS---CCC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeec---CChhhcccccccceehhhhhHh
Confidence 799999996543 334678999999999999988876 12333332 121 1 1225899999999999
Q ss_pred ccCCHHHHHHHHHhhcccCcEE
Q 021661 220 YLTKPIEVFKEMCQVLKPGGLA 241 (309)
Q Consensus 220 ~l~d~~~~l~~i~rvLkpGG~l 241 (309)
|++++..++++++++|||||.|
T Consensus 78 ~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhhHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999976
No 30
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.60 E-value=5.6e-16 Score=121.70 Aligned_cols=95 Identities=23% Similarity=0.323 Sum_probs=74.5
Q ss_pred CCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEec
Q 021661 148 PGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNV 215 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis~ 215 (309)
|+.+|||||||+|... ....++.+|+|+|+|++|++.+++ +++++++|+ .......+.||+|++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~~~~~D~v~~~ 77 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA---EFDPDFLEPFDLVICS 77 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC---HGGTTTSSCEEEEEEC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc---ccCcccCCCCCEEEEC
Confidence 4789999999999543 222478999999999999987664 378999998 2222233569999999
Q ss_pred c-chhcc---CCHHHHHHHHHhhcccCcEEEEEe
Q 021661 216 V-SVDYL---TKPIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 216 ~-vl~~l---~d~~~~l~~i~rvLkpGG~lii~~ 245 (309)
. .++++ .+..++++++.+.|||||+++|+.
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9 55544 356889999999999999999875
No 31
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.59 E-value=5.8e-15 Score=132.76 Aligned_cols=93 Identities=17% Similarity=0.297 Sum_probs=76.8
Q ss_pred CCCeEEEECCCcchhc---cC--CCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEE
Q 021661 148 PGVSILDLCSSWVSHF---PP--GYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVIT 213 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~--~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVi 213 (309)
++.+|||||||+|... .. ..++.+|+|+|+|+.|++.|++ +++++++|+ ..+|++ .+|+|+
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~---~~~~~~--~~D~vv 130 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDI---RDIAIE--NASMVV 130 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCCh---hhCCCC--CCCEEe
Confidence 3789999999999643 22 2467899999999999998754 378899998 777654 489999
Q ss_pred eccchhccCC--HHHHHHHHHhhcccCcEEEEEe
Q 021661 214 NVVSVDYLTK--PIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 214 s~~vl~~l~d--~~~~l~~i~rvLkpGG~lii~~ 245 (309)
++.+++|+++ ...++++++++|||||.+++..
T Consensus 131 ~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 131 LNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 9999999964 4689999999999999887763
No 32
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.57 E-value=1.2e-14 Score=126.32 Aligned_cols=95 Identities=21% Similarity=0.196 Sum_probs=75.3
Q ss_pred CCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCCCCceeEEEeccch
Q 021661 148 PGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 218 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl 218 (309)
++.+|||+|||+|... ..+..+.+|+|+|+|+.|++.+++ ++++.+.|+ ..++++ ++||+|+++.++
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~---~~~~~~-~~fD~I~~~~~~ 105 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDL---NNLTFD-GEYDFILSTVVL 105 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecCh---hhCCcC-CCcCEEEEecch
Confidence 4689999999999543 222346799999999999987664 267788888 666664 579999999999
Q ss_pred hccC--CHHHHHHHHHhhcccCcEE-EEEec
Q 021661 219 DYLT--KPIEVFKEMCQVLKPGGLA-IVSFS 246 (309)
Q Consensus 219 ~~l~--d~~~~l~~i~rvLkpGG~l-ii~~~ 246 (309)
+|++ +...+++++.++|||||.+ ++++.
T Consensus 106 ~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~ 136 (197)
T PRK11207 106 MFLEAKTIPGLIANMQRCTKPGGYNLIVAAM 136 (197)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence 9886 4679999999999999975 44443
No 33
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.55 E-value=1.3e-14 Score=128.17 Aligned_cols=134 Identities=14% Similarity=0.169 Sum_probs=93.1
Q ss_pred eEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEeccch
Q 021661 151 SILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVVSV 218 (309)
Q Consensus 151 ~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis~~vl 218 (309)
+|||||||+|... ....+..+|+|+|+|+++++.++++ ++++..|+ ...+++ ++||+|++..++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~---~~~~~~-~~fD~I~~~~~l 77 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDS---AKDPFP-DTYDLVFGFEVI 77 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEeccc---ccCCCC-CCCCEeehHHHH
Confidence 7999999998633 3344567999999999999877653 58889998 555554 579999999999
Q ss_pred hccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCceeeccC
Q 021661 219 DYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISP 290 (309)
Q Consensus 219 ~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~~~ 290 (309)
+|+.++..+|+++.++|||||.+++.......+...-..+.. .......-+.+.+ ..+||...+..++++
T Consensus 78 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~l-~~~Gf~~~~~~~~~~ 147 (224)
T smart00828 78 HHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETT-SYLVTREEWAELL-ARNNLRVVEGVDASL 147 (224)
T ss_pred HhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccc-cccCCHHHHHHHH-HHCCCeEEEeEECcH
Confidence 999999999999999999999988875432111000000000 0011122233344 458999888877654
No 34
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.55 E-value=1.1e-14 Score=123.91 Aligned_cols=112 Identities=28% Similarity=0.389 Sum_probs=91.8
Q ss_pred HHHhhCCCCCCCCCeEEEECCCcchhccC--CCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCCC-CCCCceeEE
Q 021661 137 YYSEVFPPSNTPGVSILDLCSSWVSHFPP--GYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLP-FEDNSFDVI 212 (309)
Q Consensus 137 ~~~~~l~~~~~~~~~ILDiGcG~g~~~~~--~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~lp-~~~~sfDlV 212 (309)
.+.++++ ++.+|||+|||.|..+.. ..++.+..|+|++++.+..+.++ +..+++|++ +.|+ +++++||.|
T Consensus 6 ~I~~~I~----pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld--~gL~~f~d~sFD~V 79 (193)
T PF07021_consen 6 IIAEWIE----PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLD--EGLADFPDQSFDYV 79 (193)
T ss_pred HHHHHcC----CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHH--HhHhhCCCCCccEE
Confidence 3444554 389999999999976533 34678999999999998887665 899999996 5565 899999999
Q ss_pred EeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhh
Q 021661 213 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISI 257 (309)
Q Consensus 213 is~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~ 257 (309)
|.+.+|+++.+|+++|+||.|+ |...++++||...|......
T Consensus 80 IlsqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l 121 (193)
T PF07021_consen 80 ILSQTLQAVRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQL 121 (193)
T ss_pred ehHhHHHhHhHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHH
Confidence 9999999999999999999877 66999999998777655543
No 35
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.55 E-value=6.6e-14 Score=126.43 Aligned_cols=162 Identities=20% Similarity=0.271 Sum_probs=105.9
Q ss_pred CCcccccCCcccccCCHHHHHHHHHHHHhhCCCCCCCCCeEEEECCCcchhccCC--CCCCeEEEEeCCHHHHhhCCC--
Q 021661 112 PDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPG--YKQDRIVGMGMNEEELKRNPV-- 187 (309)
Q Consensus 112 ~~~~~y~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~--~~~~~v~giD~S~~~l~~a~~-- 187 (309)
|+..||..+.. ..++......+.+.+.+. ..+|++|||||||||.....+ ..+.+|+|+++|+++.+.+++
T Consensus 41 Yscayf~~~~~---tL~eAQ~~k~~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~ 115 (283)
T COG2230 41 YSCAYFEDPDM---TLEEAQRAKLDLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRI 115 (283)
T ss_pred eeeEEeCCCCC---ChHHHHHHHHHHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHH
Confidence 45555555443 223334444455555555 477999999999999665333 237899999999999988766
Q ss_pred -------CCcEEEecCCCCCCCCCCCCceeEEEeccchhccCC--HHHHHHHHHhhcccCcEEEEEec-Ccc----hhHH
Q 021661 188 -------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK--PIEVFKEMCQVLKPGGLAIVSFS-NRC----FWTK 253 (309)
Q Consensus 188 -------~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d--~~~~l~~i~rvLkpGG~lii~~~-~~~----~~~~ 253 (309)
++++...|. .++. +.||.|+|..+++|+.. ...+|+.++++|+|||.+++... .+. ....
T Consensus 116 ~~~gl~~~v~v~l~d~---rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~ 189 (283)
T COG2230 116 AARGLEDNVEVRLQDY---RDFE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPD 189 (283)
T ss_pred HHcCCCcccEEEeccc---cccc---cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchH
Confidence 367777887 5553 44999999999999964 89999999999999997766543 222 1222
Q ss_pred Hhhhhh-cCCCCchhHhHHHHHHHhCCCCCCce
Q 021661 254 AISIWT-STGDADHVMIVGAYFHYAGGYEPPQA 285 (309)
Q Consensus 254 ~~~~w~-~~~~~~h~~~~~~~f~~~~Gf~~~~~ 285 (309)
.+..+. ..+....+..+.+.. ...||.....
T Consensus 190 ~i~~yiFPgG~lPs~~~i~~~~-~~~~~~v~~~ 221 (283)
T COG2230 190 FIDKYIFPGGELPSISEILELA-SEAGFVVLDV 221 (283)
T ss_pred HHHHhCCCCCcCCCHHHHHHHH-HhcCcEEehH
Confidence 222222 223333345555543 4467765443
No 36
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.55 E-value=9.3e-15 Score=132.65 Aligned_cols=96 Identities=18% Similarity=0.265 Sum_probs=78.1
Q ss_pred CCCeEEEECCCcchh-------ccCCC-----CCCeEEEEeCCHHHHhhCCC----------------------------
Q 021661 148 PGVSILDLCSSWVSH-------FPPGY-----KQDRIVGMGMNEEELKRNPV---------------------------- 187 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~-------~~~~~-----~~~~v~giD~S~~~l~~a~~---------------------------- 187 (309)
++.+|+|+|||+|.. +.... ...+|+|+|+|+.||+.|++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 467999999999941 11111 24689999999999998776
Q ss_pred -------CCcEEEecCCCCCCCCCCCCceeEEEeccchhccCCH--HHHHHHHHhhcccCcEEEEEec
Q 021661 188 -------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP--IEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 188 -------~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~--~~~l~~i~rvLkpGG~lii~~~ 246 (309)
+++|.++|+ .+.++++++||+|+|.++++|++++ .+++++++++|||||++++...
T Consensus 179 v~~~ir~~V~F~~~dl---~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 179 VKPELKERVRFAKHNL---LAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EChHHhCcCEEeeccC---CCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 267889999 7777677899999999999999744 5899999999999999998644
No 37
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.55 E-value=5.3e-14 Score=121.19 Aligned_cols=130 Identities=15% Similarity=0.106 Sum_probs=94.1
Q ss_pred CCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
+.+|||+|||+|.. +....+..+|+|+|+|+.|++.++++ ++++++|+ .+++. +++||+|++..
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~---~~~~~-~~~fDlV~~~~- 120 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRA---EEFGQ-EEKFDVVTSRA- 120 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccH---hhCCC-CCCccEEEEcc-
Confidence 78999999999952 23345788999999999999877652 78999999 67766 67899999975
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCceeeccCCCCCCCC
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDP 297 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~~~~~~~~~p 297 (309)
+.+++.++++++++|||||.+++....... . + -.-..++.|+...+.+-.+.+..+..|
T Consensus 121 ---~~~~~~~l~~~~~~LkpGG~lv~~~~~~~~-~-------------~----l~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (187)
T PRK00107 121 ---VASLSDLVELCLPLLKPGGRFLALKGRDPE-E-------------E----IAELPKALGGKVEEVIELTLPGLDGER 179 (187)
T ss_pred ---ccCHHHHHHHHHHhcCCCeEEEEEeCCChH-H-------------H----HHHHHHhcCceEeeeEEEecCCCCCcE
Confidence 457889999999999999988776432110 0 0 011224568887777766665555556
Q ss_pred cEEEEEEe
Q 021661 298 MYVVYSRK 305 (309)
Q Consensus 298 ~~~v~a~k 305 (309)
+.++-||
T Consensus 180 -~~~~~~~ 186 (187)
T PRK00107 180 -HLVIIRK 186 (187)
T ss_pred -EEEEEec
Confidence 4555555
No 38
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.54 E-value=1.1e-13 Score=121.48 Aligned_cols=94 Identities=29% Similarity=0.464 Sum_probs=78.9
Q ss_pred CCCeEEEECCCcchhc---cCCCCC-CeEEEEeCCHHHHhhCCC------CCcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 148 PGVSILDLCSSWVSHF---PPGYKQ-DRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~~~~~-~~v~giD~S~~~l~~a~~------~i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
++.+|||+|||.|... ....+. .+++++|+++.+++.+++ ++++..+|+ .++++++++||+|+++.+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~---~~~~~~~~~~D~i~~~~~ 115 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADA---EALPFEDNSFDAVTIAFG 115 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecch---hcCCCCCCcEEEEEEeee
Confidence 5789999999988543 223333 689999999999987654 378899999 777777788999999999
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
++|..++..+++++.++|+|||.+++.
T Consensus 116 ~~~~~~~~~~l~~~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 116 LRNVTDIQKALREMYRVLKPGGRLVIL 142 (223)
T ss_pred eCCcccHHHHHHHHHHHcCCCcEEEEE
Confidence 999999999999999999999987664
No 39
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.54 E-value=8.8e-14 Score=123.39 Aligned_cols=94 Identities=31% Similarity=0.469 Sum_probs=78.1
Q ss_pred CCCeEEEECCCcchhc---cCCCC-CCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 148 PGVSILDLCSSWVSHF---PPGYK-QDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~~~~-~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
++.+|||+|||.|... ....+ ..+++++|+++.+++.++++ +.++.+|+ .+++++.++||+|++
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~D~I~~ 127 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDA---EALPFPDNSFDAVTI 127 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEeccc---ccCCCCCCCccEEEE
Confidence 4689999999988543 22233 57999999999999876543 67888898 677777788999999
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
..+++++.++..+++++.++|+|||.+++.
T Consensus 128 ~~~l~~~~~~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 128 AFGLRNVPDIDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred ecccccCCCHHHHHHHHHHhccCCcEEEEE
Confidence 999999999999999999999999977554
No 40
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.51 E-value=1.2e-13 Score=120.77 Aligned_cols=95 Identities=18% Similarity=0.267 Sum_probs=75.5
Q ss_pred CCCeEEEECCCcchhcc---CCCCCCeEEEEeCCHHHHhhCCCC---CcEEEecCCCCCCCCCCCCceeEEEeccchhcc
Q 021661 148 PGVSILDLCSSWVSHFP---PGYKQDRIVGMGMNEEELKRNPVL---TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYL 221 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~---~~~~~~~v~giD~S~~~l~~a~~~---i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l 221 (309)
++.+|||||||+|..+. ...++.+++|+|+|++|++.|+++ +.+.++|+ .. |+++++||+|+++.+|+|+
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~---~~-~~~~~sfD~V~~~~vL~hl 118 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSL---FD-PFKDNFFDLVLTKGVLIHI 118 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeec---cC-CCCCCCEEEEEECChhhhC
Confidence 46799999999996432 333578999999999999999774 78899998 56 7888999999999999999
Q ss_pred C--CHHHHHHHHHhhcccCcEEEE-EecCc
Q 021661 222 T--KPIEVFKEMCQVLKPGGLAIV-SFSNR 248 (309)
Q Consensus 222 ~--d~~~~l~~i~rvLkpGG~lii-~~~~~ 248 (309)
+ +..++++++.|++ ++.++| +..++
T Consensus 119 ~p~~~~~~l~el~r~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 119 NPDNLPTAYRELYRCS--NRYILIAEYYNP 146 (204)
T ss_pred CHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence 5 3578899999987 355554 44343
No 41
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.50 E-value=2.7e-14 Score=130.00 Aligned_cols=109 Identities=22% Similarity=0.314 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEECCCcchhccCC--CCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCC
Q 021661 130 AIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPG--YKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNL 198 (309)
Q Consensus 130 ~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~--~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~ 198 (309)
...+..+.+.+.+. ..++.+|||||||+|.....+ ..+++|+|+.+|+++.+.+++ ++++...|.
T Consensus 46 AQ~~k~~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~-- 121 (273)
T PF02353_consen 46 AQERKLDLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDY-- 121 (273)
T ss_dssp HHHHHHHHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-G--
T ss_pred HHHHHHHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeec--
Confidence 34445556666554 477999999999999654322 227899999999999987653 267888888
Q ss_pred CCCCCCCCCceeEEEeccchhcc--CCHHHHHHHHHhhcccCcEEEEEec
Q 021661 199 NPKLPFEDNSFDVITNVVSVDYL--TKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 199 ~~~lp~~~~sfDlVis~~vl~~l--~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
.+++. +||.|+|..+++|+ .+...+++++.++|||||.+++...
T Consensus 122 -~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i 167 (273)
T PF02353_consen 122 -RDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTI 167 (273)
T ss_dssp -GG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEE
T ss_pred -cccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEec
Confidence 66543 89999999999999 4678999999999999999987754
No 42
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.49 E-value=4.1e-15 Score=115.20 Aligned_cols=85 Identities=26% Similarity=0.425 Sum_probs=66.4
Q ss_pred EEEECCCcchhccC---C---CCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCCCCCceeEEEecc-c
Q 021661 152 ILDLCSSWVSHFPP---G---YKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVV-S 217 (309)
Q Consensus 152 ILDiGcG~g~~~~~---~---~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~~~~sfDlVis~~-v 217 (309)
|||+|||+|..+.. . .+..+++|+|+|++|++.++++ ++++++|+ .+++..+++||+|+++. +
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~---~~l~~~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADA---RDLPFSDGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCT---TCHHHHSSSEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCH---hHCcccCCCeeEEEEcCCc
Confidence 79999999854321 1 2347999999999999987664 69999999 88988888999999954 5
Q ss_pred hhccCC--HHHHHHHHHhhcccCc
Q 021661 218 VDYLTK--PIEVFKEMCQVLKPGG 239 (309)
Q Consensus 218 l~~l~d--~~~~l~~i~rvLkpGG 239 (309)
++|+.+ ..++++++.++|||||
T Consensus 78 ~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 78 LHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCC
Confidence 999864 5789999999999998
No 43
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.49 E-value=5.2e-14 Score=122.17 Aligned_cols=93 Identities=17% Similarity=0.191 Sum_probs=72.4
Q ss_pred CCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCCCCCceeEEEeccchh
Q 021661 148 PGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 219 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~ 219 (309)
++.+|||+|||+|... ..+..+.+|+|+|+|+.|++.++++ +.+.+.|+ ...+++ ++||+|+++.+++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~---~~~~~~-~~fD~I~~~~~~~ 105 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDI---NAAALN-EDYDFIFSTVVFM 105 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccc---hhcccc-CCCCEEEEecccc
Confidence 3679999999999643 2223467999999999999876532 56777777 555554 5799999999999
Q ss_pred ccC--CHHHHHHHHHhhcccCcEE-EEE
Q 021661 220 YLT--KPIEVFKEMCQVLKPGGLA-IVS 244 (309)
Q Consensus 220 ~l~--d~~~~l~~i~rvLkpGG~l-ii~ 244 (309)
|++ +...+++++.++|||||.+ ++.
T Consensus 106 ~~~~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 106 FLQAGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred cCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 985 4578999999999999974 444
No 44
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.49 E-value=3e-13 Score=117.16 Aligned_cols=100 Identities=28% Similarity=0.354 Sum_probs=79.3
Q ss_pred CCeEEEECCCcchhccCC--CCCCeEEEEeCCHHHHhhCCC-CCcEEEecCCCCCC-C-CCCCCceeEEEeccchhccCC
Q 021661 149 GVSILDLCSSWVSHFPPG--YKQDRIVGMGMNEEELKRNPV-LTEYVVQDLNLNPK-L-PFEDNSFDVITNVVSVDYLTK 223 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~~--~~~~~v~giD~S~~~l~~a~~-~i~~~~~D~~~~~~-l-p~~~~sfDlVis~~vl~~l~d 223 (309)
+.+|||||||+|...... .....++|+|+|++|++.+++ +++++++|+ .+ + ++++++||+|+++.+++|+.+
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~---~~~l~~~~~~sfD~Vi~~~~l~~~~d 90 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDL---DEGLEAFPDKSFDYVILSQTLQATRN 90 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEh---hhcccccCCCCcCEEEEhhHhHcCcC
Confidence 679999999999654322 235678999999999998754 488999998 43 4 367789999999999999999
Q ss_pred HHHHHHHHHhhcccCcEEEEEecCcchhHHH
Q 021661 224 PIEVFKEMCQVLKPGGLAIVSFSNRCFWTKA 254 (309)
Q Consensus 224 ~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~ 254 (309)
+..+++++.|+++ .+++++++...+...
T Consensus 91 ~~~~l~e~~r~~~---~~ii~~p~~~~~~~~ 118 (194)
T TIGR02081 91 PEEILDEMLRVGR---HAIVSFPNFGYWRVR 118 (194)
T ss_pred HHHHHHHHHHhCC---eEEEEcCChhHHHHH
Confidence 9999999988754 567788876555433
No 45
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.49 E-value=4.1e-14 Score=121.41 Aligned_cols=97 Identities=15% Similarity=0.264 Sum_probs=86.2
Q ss_pred CCCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCCC---CcEEEecCCCCCCCCCCCCceeEEEeccchhc
Q 021661 147 TPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVL---TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 220 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~---i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~ 220 (309)
....+|.|+|||.|.. +....|.+.|+|+|-|++||+.|+++ ++|.++|+ .... ++..+|+++++-+|+|
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl---~~w~-p~~~~dllfaNAvlqW 104 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADL---RTWK-PEQPTDLLFANAVLQW 104 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccH---hhcC-CCCccchhhhhhhhhh
Confidence 4578999999998853 45668999999999999999999774 89999999 6665 3567999999999999
Q ss_pred cCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 221 LTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 221 l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
++|..+.|..+...|.|||.|.+..++
T Consensus 105 lpdH~~ll~rL~~~L~Pgg~LAVQmPd 131 (257)
T COG4106 105 LPDHPELLPRLVSQLAPGGVLAVQMPD 131 (257)
T ss_pred ccccHHHHHHHHHhhCCCceEEEECCC
Confidence 999999999999999999999999886
No 46
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.48 E-value=2.3e-13 Score=124.05 Aligned_cols=107 Identities=20% Similarity=0.304 Sum_probs=80.8
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEECCCcchhcc---CCCC---CCeEEEEeCCHHHHhhCCCC---CcEEEecCCCCCC
Q 021661 131 IAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFP---PGYK---QDRIVGMGMNEEELKRNPVL---TEYVVQDLNLNPK 201 (309)
Q Consensus 131 ~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~---~~~~---~~~v~giD~S~~~l~~a~~~---i~~~~~D~~~~~~ 201 (309)
...+.+.+.+.++ .+..+|||+|||+|.... ...+ ...++|+|+|+.|++.|+++ +.+.++|+ .+
T Consensus 71 ~~~i~~~l~~~l~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~---~~ 144 (272)
T PRK11088 71 RDAVANLLAERLD---EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASS---HR 144 (272)
T ss_pred HHHHHHHHHHhcC---CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeec---cc
Confidence 3444555555554 235789999999996432 2222 24799999999999988653 78999999 88
Q ss_pred CCCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcch
Q 021661 202 LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCF 250 (309)
Q Consensus 202 lp~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~ 250 (309)
+|+++++||+|++.+. ...++++.|+|||||.+++..++...
T Consensus 145 lp~~~~sfD~I~~~~~-------~~~~~e~~rvLkpgG~li~~~p~~~~ 186 (272)
T PRK11088 145 LPFADQSLDAIIRIYA-------PCKAEELARVVKPGGIVITVTPGPRH 186 (272)
T ss_pred CCCcCCceeEEEEecC-------CCCHHHHHhhccCCCEEEEEeCCCcc
Confidence 9999999999998764 13468999999999999888776543
No 47
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.46 E-value=1.2e-13 Score=125.10 Aligned_cols=148 Identities=14% Similarity=0.151 Sum_probs=97.2
Q ss_pred HHHhhCCCCCCCCCeEEEECCCcchhccCCC-CC-CeEEEEeCCHHHHhhCC-------CCCcEEEe--cCCCCCCCCCC
Q 021661 137 YYSEVFPPSNTPGVSILDLCSSWVSHFPPGY-KQ-DRIVGMGMNEEELKRNP-------VLTEYVVQ--DLNLNPKLPFE 205 (309)
Q Consensus 137 ~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~~-~~-~~v~giD~S~~~l~~a~-------~~i~~~~~--D~~~~~~lp~~ 205 (309)
.+..++++ -++.+|||||||.|-+...+. .+ ..|+|+|+++....+.. ........ -+ +++|.
T Consensus 106 rl~p~l~~--L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgv---E~Lp~- 179 (315)
T PF08003_consen 106 RLLPHLPD--LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGV---EDLPN- 179 (315)
T ss_pred HHHhhhCC--cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcch---hhccc-
Confidence 34455542 568999999999997654332 23 47999999987654421 11222333 34 67776
Q ss_pred CCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecC---c---c-hhHHHhhhhhcCCCCchhHhHHHHHHHhC
Q 021661 206 DNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN---R---C-FWTKAISIWTSTGDADHVMIVGAYFHYAG 278 (309)
Q Consensus 206 ~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~---~---~-~~~~~~~~w~~~~~~~h~~~~~~~f~~~~ 278 (309)
.++||+|+|..||.|..+|-..|+++...|+|||.+++++.- . . .....|.......--..+.....++ +..
T Consensus 180 ~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl-~r~ 258 (315)
T PF08003_consen 180 LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWL-ERA 258 (315)
T ss_pred cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHH-HHc
Confidence 678999999999999999999999999999999999988532 0 1 1111111111111111122233344 569
Q ss_pred CCCCCceeeccCC
Q 021661 279 GYEPPQAVDISPN 291 (309)
Q Consensus 279 Gf~~~~~~~~~~~ 291 (309)
||++++++++++.
T Consensus 259 gF~~v~~v~~~~T 271 (315)
T PF08003_consen 259 GFKDVRCVDVSPT 271 (315)
T ss_pred CCceEEEecCccC
Confidence 9999999999755
No 48
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.46 E-value=1.3e-12 Score=112.52 Aligned_cols=135 Identities=13% Similarity=0.135 Sum_probs=95.0
Q ss_pred CCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEec
Q 021661 147 TPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis~ 215 (309)
.++.+|||+|||+|... ....+..+|+++|+|+.|++.++++ ++++.+|+ . .++ .++||+|++.
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~---~-~~~-~~~~D~v~~~ 104 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEA---P-IEL-PGKADAIFIG 104 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCc---h-hhc-CcCCCEEEEC
Confidence 34789999999998542 3345678999999999999887653 56777776 3 233 3579999998
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCceeeccCCC---
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNP--- 292 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~~~~~--- 292 (309)
.... ....+++.+.++|||||.+++....... ..-+.+++ .+.||..+++.......
T Consensus 105 ~~~~---~~~~~l~~~~~~Lk~gG~lv~~~~~~~~----------------~~~~~~~l-~~~g~~~~~~~~~~~~~~~~ 164 (187)
T PRK08287 105 GSGG---NLTAIIDWSLAHLHPGGRLVLTFILLEN----------------LHSALAHL-EKCGVSELDCVQLQVSSLTP 164 (187)
T ss_pred CCcc---CHHHHHHHHHHhcCCCeEEEEEEecHhh----------------HHHHHHHH-HHCCCCcceEEEEEEEeeeE
Confidence 7644 4567899999999999999886432111 11222344 45889888776654322
Q ss_pred -------CCCCCcEEEEEEeC
Q 021661 293 -------GRSDPMYVVYSRKA 306 (309)
Q Consensus 293 -------~~~~p~~~v~a~k~ 306 (309)
+...|+++++++|+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~ 185 (187)
T PRK08287 165 LGAGHYFKPNNPTFIISCQKE 185 (187)
T ss_pred cCcceeeccCCCEEEEEEEcC
Confidence 12469999999994
No 49
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.45 E-value=4.9e-13 Score=112.44 Aligned_cols=69 Identities=29% Similarity=0.505 Sum_probs=62.5
Q ss_pred EEEeCCHHHHhhCCC-----------CCcEEEecCCCCCCCCCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEE
Q 021661 173 VGMGMNEEELKRNPV-----------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLA 241 (309)
Q Consensus 173 ~giD~S~~~l~~a~~-----------~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~l 241 (309)
+|+|+|++|++.|++ +++++++|+ +++|+++++||+|++.++++++.|+.++|++++|+|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~---~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDA---IDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEech---hhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEE
Confidence 589999999998742 378999999 899999999999999999999999999999999999999977
Q ss_pred EEE
Q 021661 242 IVS 244 (309)
Q Consensus 242 ii~ 244 (309)
++.
T Consensus 78 ~i~ 80 (160)
T PLN02232 78 SIL 80 (160)
T ss_pred EEE
Confidence 554
No 50
>PRK04266 fibrillarin; Provisional
Probab=99.45 E-value=2.1e-12 Score=114.52 Aligned_cols=140 Identities=18% Similarity=0.187 Sum_probs=91.7
Q ss_pred CCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhh----CC--CCCcEEEecCCCCC-CCCCCCCceeEEEecc
Q 021661 147 TPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKR----NP--VLTEYVVQDLNLNP-KLPFEDNSFDVITNVV 216 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~----a~--~~i~~~~~D~~~~~-~lp~~~~sfDlVis~~ 216 (309)
.++.+|||+|||+|... ....+.++|+|+|+++.|++. ++ .++.++.+|+.... ..++. ++||+|++.
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d- 148 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKVDVIYQD- 148 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccCCEEEEC-
Confidence 56889999999988532 222335699999999998873 33 35888999983110 01223 469999864
Q ss_pred chhccCCH---HHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHH---HHHHHhCCCCCCceeeccC
Q 021661 217 SVDYLTKP---IEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVG---AYFHYAGGYEPPQAVDISP 290 (309)
Q Consensus 217 vl~~l~d~---~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~---~~f~~~~Gf~~~~~~~~~~ 290 (309)
+.++ ..+++++.++|||||.++|.++... -.|.. .+.+.+. +.+ .++||+.++..+..+
T Consensus 149 ----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~------~d~~~----~~~~~~~~~~~~l-~~aGF~~i~~~~l~p 213 (226)
T PRK04266 149 ----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARS------IDVTK----DPKEIFKEEIRKL-EEGGFEILEVVDLEP 213 (226)
T ss_pred ----CCChhHHHHHHHHHHHhcCCCcEEEEEEeccc------ccCcC----CHHHHHHHHHHHH-HHcCCeEEEEEcCCC
Confidence 2233 3568999999999999988755321 01111 1112222 233 568999998888766
Q ss_pred CCCCCCCcEEEEEEeC
Q 021661 291 NPGRSDPMYVVYSRKA 306 (309)
Q Consensus 291 ~~~~~~p~~~v~a~k~ 306 (309)
.. ...|.++++|.
T Consensus 214 ~~---~~h~~~v~~~~ 226 (226)
T PRK04266 214 YH---KDHAAVVARKK 226 (226)
T ss_pred Cc---CCeEEEEEEcC
Confidence 43 46688888874
No 51
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.44 E-value=6.5e-13 Score=114.31 Aligned_cols=97 Identities=21% Similarity=0.341 Sum_probs=80.4
Q ss_pred CCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCC---CcEEEecCCCCCCCCCCCCceeEEEeccchhccC-
Q 021661 148 PGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVL---TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT- 222 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~---i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~- 222 (309)
+..-|||||||+|..- ....++...+|+|+|+.||++|.+. -+++.+|+. +.+||..++||-+|+..+++|+-
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG--~GlpfrpGtFDg~ISISAvQWLcn 127 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELEGDLILCDMG--EGLPFRPGTFDGVISISAVQWLCN 127 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhhcCeeeeecC--CCCCCCCCccceEEEeeeeeeecc
Confidence 5789999999988543 2334567899999999999998753 468888886 78999999999999999999973
Q ss_pred ------CH----HHHHHHHHhhcccCcEEEEEec
Q 021661 223 ------KP----IEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 223 ------d~----~~~l~~i~rvLkpGG~lii~~~ 246 (309)
+| ..++..++.+|++|+..++.+.
T Consensus 128 A~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY 161 (270)
T KOG1541|consen 128 ADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY 161 (270)
T ss_pred cCccccChHHHHHHHhhhhhhhhccCceeEEEec
Confidence 23 3588999999999999999865
No 52
>PRK06922 hypothetical protein; Provisional
Probab=99.44 E-value=2.9e-13 Score=134.09 Aligned_cols=95 Identities=23% Similarity=0.260 Sum_probs=78.9
Q ss_pred CCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCC--CCCCceeEEEec
Q 021661 148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLP--FEDNSFDVITNV 215 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp--~~~~sfDlVis~ 215 (309)
++.+|||||||+|.. +....++.+|+|+|+|+.|++.++++ ++++++|+ .++| +++++||+|+++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa---~dLp~~fedeSFDvVVsn 494 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDA---INLSSSFEKESVDTIVYS 494 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcch---HhCccccCCCCEEEEEEc
Confidence 378999999999954 33346788999999999999987653 56788998 6777 778899999999
Q ss_pred cchhccC-------------CHHHHHHHHHhhcccCcEEEEEe
Q 021661 216 VSVDYLT-------------KPIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 216 ~vl~~l~-------------d~~~~l~~i~rvLkpGG~lii~~ 245 (309)
.++||+. ++.++|++++++|||||.+++..
T Consensus 495 ~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 495 SILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred hHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 9998752 45799999999999999888864
No 53
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.43 E-value=7.1e-13 Score=117.84 Aligned_cols=156 Identities=21% Similarity=0.285 Sum_probs=103.3
Q ss_pred CCCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCC-CCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLP-FEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp-~~~~sfDlVis~~v 217 (309)
.++.+|||||||+|..... ...+.+++++|+++.+++.++++ +++...|+ ..++ ..+++||+|++..+
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~~~~~fD~Ii~~~~ 123 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTA---EELAAEHPGQFDVVTCMEM 123 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCH---HHhhhhcCCCccEEEEhhH
Confidence 3578999999998854321 22356899999999999877642 56777777 5543 34578999999999
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHH--------hhhhhcCCCCchhHh-----HHHHHHHhCCCCCCc
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKA--------ISIWTSTGDADHVMI-----VGAYFHYAGGYEPPQ 284 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~--------~~~w~~~~~~~h~~~-----~~~~f~~~~Gf~~~~ 284 (309)
++|+.++..+|+++.++|+|||.++++.++....... ...+.......+..+ +...+ ..+||+.++
T Consensus 124 l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gf~~v~ 202 (233)
T PRK05134 124 LEHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWL-RQAGLEVQD 202 (233)
T ss_pred hhccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHH-HHCCCeEee
Confidence 9999999999999999999999999887654322111 111111111111111 22233 569999888
Q ss_pred eeeccCCCC--------CCCCcEEEEEEeC
Q 021661 285 AVDISPNPG--------RSDPMYVVYSRKA 306 (309)
Q Consensus 285 ~~~~~~~~~--------~~~p~~~v~a~k~ 306 (309)
......++. ..+-.|...+||+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (233)
T PRK05134 203 ITGLHYNPLTNRWKLSDDVDVNYMLAARKP 232 (233)
T ss_pred eeeEEechhhcceeeccCccchhhhheecC
Confidence 876554331 1233366666664
No 54
>PRK06202 hypothetical protein; Provisional
Probab=99.43 E-value=7.9e-13 Score=117.68 Aligned_cols=96 Identities=9% Similarity=0.054 Sum_probs=74.9
Q ss_pred CCCCeEEEECCCcchhccC-------CCCCCeEEEEeCCHHHHhhCCCC-----CcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHFPP-------GYKQDRIVGMGMNEEELKRNPVL-----TEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~-------~~~~~~v~giD~S~~~l~~a~~~-----i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.++.+|||||||+|..... ..+..+|+|+|+|++|++.|+++ +++.+.|. ..++.++++||+|++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~---~~l~~~~~~fD~V~~ 135 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVS---DELVAEGERFDVVTS 135 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEec---ccccccCCCccEEEE
Confidence 3467999999999964211 22356999999999999988764 56778887 667777789999999
Q ss_pred ccchhccCCH--HHHHHHHHhhcccCcEEEEEec
Q 021661 215 VVSVDYLTKP--IEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 215 ~~vl~~l~d~--~~~l~~i~rvLkpGG~lii~~~ 246 (309)
++++||++++ ..+++++.|+++ |+.++..+.
T Consensus 136 ~~~lhh~~d~~~~~~l~~~~r~~~-~~~~i~dl~ 168 (232)
T PRK06202 136 NHFLHHLDDAEVVRLLADSAALAR-RLVLHNDLI 168 (232)
T ss_pred CCeeecCChHHHHHHHHHHHHhcC-eeEEEeccc
Confidence 9999999875 579999999998 444444443
No 55
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.42 E-value=4.1e-13 Score=128.00 Aligned_cols=104 Identities=22% Similarity=0.300 Sum_probs=80.3
Q ss_pred HHHHHhhCCCCCCCCCeEEEECCCcchhccCC--CCCCeEEEEeCCHHHHhhCCCC-----CcEEEecCCCCCCCCCCCC
Q 021661 135 TKYYSEVFPPSNTPGVSILDLCSSWVSHFPPG--YKQDRIVGMGMNEEELKRNPVL-----TEYVVQDLNLNPKLPFEDN 207 (309)
Q Consensus 135 ~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~--~~~~~v~giD~S~~~l~~a~~~-----i~~~~~D~~~~~~lp~~~~ 207 (309)
.+.+.+.+. ..++.+|||||||+|...... ..+.+|+|+|+|++|++.++++ +++...|. ..+ ++
T Consensus 156 ~~~l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~---~~l---~~ 227 (383)
T PRK11705 156 LDLICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDY---RDL---NG 227 (383)
T ss_pred HHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECch---hhc---CC
Confidence 344444443 256889999999999654322 2367999999999999988764 56677777 544 46
Q ss_pred ceeEEEeccchhccC--CHHHHHHHHHhhcccCcEEEEEec
Q 021661 208 SFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 208 sfDlVis~~vl~~l~--d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
+||+|++..+++|+. ++..+++++.++|||||.+++...
T Consensus 228 ~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 228 QFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred CCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 899999999999995 457999999999999999888754
No 56
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.42 E-value=2.3e-13 Score=125.05 Aligned_cols=91 Identities=16% Similarity=0.238 Sum_probs=73.0
Q ss_pred CCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCCCCCceeEEEeccchhc
Q 021661 149 GVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 220 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~ 220 (309)
+.+|||+|||+|... ..+..+.+|+|+|+|+.|++.++++ +++.+.|+ ...++ +++||+|+++.+++|
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~---~~~~~-~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDI---NSASI-QEEYDFILSTVVLMF 196 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEech---hcccc-cCCccEEEEcchhhh
Confidence 459999999999643 2233467999999999999876542 67778888 55544 578999999999999
Q ss_pred cC--CHHHHHHHHHhhcccCcEEEE
Q 021661 221 LT--KPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 221 l~--d~~~~l~~i~rvLkpGG~lii 243 (309)
++ +...+++++.++|||||++++
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 86 567899999999999997554
No 57
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.40 E-value=9.7e-13 Score=116.03 Aligned_cols=105 Identities=13% Similarity=0.133 Sum_probs=76.8
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCC
Q 021661 133 ALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKL 202 (309)
Q Consensus 133 ~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~l 202 (309)
.+.+.+.+.++....++.+|||+|||+|..... +..+.+|+|+|+|++|++.|++ ++.+.++|+ ..+
T Consensus 40 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~---~~~ 116 (219)
T TIGR02021 40 AMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDL---LSL 116 (219)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCh---hhC
Confidence 344444444432124578999999999964322 2235699999999999987764 367888998 666
Q ss_pred CCCCCceeEEEeccchhccC--CHHHHHHHHHhhcccCcEEEE
Q 021661 203 PFEDNSFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 203 p~~~~sfDlVis~~vl~~l~--d~~~~l~~i~rvLkpGG~lii 243 (309)
+ ++||+|++..+++|++ +...+++++.+++++++.+.+
T Consensus 117 ~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 117 C---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred C---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 5 6899999999999985 357899999999986655544
No 58
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.39 E-value=9.9e-13 Score=114.73 Aligned_cols=141 Identities=19% Similarity=0.222 Sum_probs=95.9
Q ss_pred HHhhccCCCCcccccCCcccccCCHHHHHHHHHHHHhhCCCCCCCCCeEEEECCCcchhcc---CCCC--CCeEEEEeCC
Q 021661 104 DFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFP---PGYK--QDRIVGMGMN 178 (309)
Q Consensus 104 ~f~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~---~~~~--~~~v~giD~S 178 (309)
.+.+....||+.||..+.-...-++... .+-+-++++....+..+|||||||.|..+. ...+ ...|.++|+|
T Consensus 30 ~y~~~~~k~wD~fy~~~~~rFfkdR~wL---~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfs 106 (264)
T KOG2361|consen 30 KYEREASKYWDTFYKIHENRFFKDRNWL---LREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFS 106 (264)
T ss_pred hhhcchhhhhhhhhhhccccccchhHHH---HHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCC
Confidence 3456666777778876542212222221 122223333222334489999999886542 2233 3689999999
Q ss_pred HHHHhhCCCC-------CcEEEecCCCCC-CCCCCCCceeEEEeccchhccC--CHHHHHHHHHhhcccCcEEEEEecC
Q 021661 179 EEELKRNPVL-------TEYVVQDLNLNP-KLPFEDNSFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 179 ~~~l~~a~~~-------i~~~~~D~~~~~-~lp~~~~sfDlVis~~vl~~l~--d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+.+++..+++ +.-.+.|+.... .-|...+++|+|++.++|..+. ....++++++++|||||.+++-...
T Consensus 107 p~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg 185 (264)
T KOG2361|consen 107 PRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYG 185 (264)
T ss_pred hHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecc
Confidence 9999987764 666788874422 2356788999999999999994 4678999999999999999887544
No 59
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.39 E-value=1.9e-12 Score=102.95 Aligned_cols=94 Identities=20% Similarity=0.141 Sum_probs=72.0
Q ss_pred CCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCC-CCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPK-LPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~-lp~~~~sfDlVis 214 (309)
.++.+|||+|||+|... ....+..+|+|+|+|+.+++.+++ +++++..|+ .. ++...++||+|++
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~v~~ 94 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDA---PEALEDSLPEPDRVFI 94 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccc---cccChhhcCCCCEEEE
Confidence 34679999999998543 333456899999999999987654 267777887 33 3333468999999
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
....+ ...++++++.+.|||||.+++++.
T Consensus 95 ~~~~~---~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 95 GGSGG---LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred CCcch---hHHHHHHHHHHHcCCCCEEEEEec
Confidence 77554 346899999999999999998764
No 60
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.38 E-value=4.9e-13 Score=116.72 Aligned_cols=103 Identities=16% Similarity=0.114 Sum_probs=78.3
Q ss_pred CCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCC--CCCCceeEEEe
Q 021661 148 PGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLP--FEDNSFDVITN 214 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp--~~~~sfDlVis 214 (309)
++.+|||+|||+|... ....+..+|+|+|+|+.|++.+++ +++++++|+. +.++ +++++||+|++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~--~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAV--EVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHH--HHHHHHcCccccceEEE
Confidence 3679999999999543 334567799999999999987754 3778898871 2344 56788999999
Q ss_pred ccchhccC--------CHHHHHHHHHhhcccCcEEEEEecCcchhH
Q 021661 215 VVSVDYLT--------KPIEVFKEMCQVLKPGGLAIVSFSNRCFWT 252 (309)
Q Consensus 215 ~~vl~~l~--------d~~~~l~~i~rvLkpGG~lii~~~~~~~~~ 252 (309)
++...+.. ....++++++++|||||.+++...+.....
T Consensus 118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~ 163 (202)
T PRK00121 118 NFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAE 163 (202)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHH
Confidence 87654432 147899999999999999999877654443
No 61
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.38 E-value=3.1e-12 Score=111.24 Aligned_cols=136 Identities=15% Similarity=0.109 Sum_probs=94.2
Q ss_pred CCCCeEEEECCCcchhcc----CCCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCC-CCCCCCceeEE
Q 021661 147 TPGVSILDLCSSWVSHFP----PGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPK-LPFEDNSFDVI 212 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~----~~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~-lp~~~~sfDlV 212 (309)
.++.+|||+|||+|.... ...+..+|+++|+++.|++.+++ ++.++.+|+ .+ ++...++||+|
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~---~~~l~~~~~~~D~V 115 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEA---PEILFTINEKFDRI 115 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEech---hhhHhhcCCCCCEE
Confidence 458899999999995432 22356799999999999987654 356778887 44 33334679999
Q ss_pred EeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCceeeccCCC
Q 021661 213 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNP 292 (309)
Q Consensus 213 is~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~~~~~ 292 (309)
++.. ...++..+++++.++|||||.+++....... +......+ +..|| ..+++.+...-
T Consensus 116 ~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~----------------~~~~~~~l-~~~g~-~~~~~~~~~~~ 174 (198)
T PRK00377 116 FIGG---GSEKLKEIISASWEIIKKGGRIVIDAILLET----------------VNNALSAL-ENIGF-NLEITEVIIAK 174 (198)
T ss_pred EECC---CcccHHHHHHHHHHHcCCCcEEEEEeecHHH----------------HHHHHHHH-HHcCC-CeEEEEEehhh
Confidence 9865 2357789999999999999999887653221 12222333 34777 56666664321
Q ss_pred -----C-----CCCCcEEEEEEeC
Q 021661 293 -----G-----RSDPMYVVYSRKA 306 (309)
Q Consensus 293 -----~-----~~~p~~~v~a~k~ 306 (309)
+ -..|+++++++|+
T Consensus 175 ~~~~~~~~~~~~~npv~~~~~~~~ 198 (198)
T PRK00377 175 GMKTKVGTAMMTRNPIFIISGEKQ 198 (198)
T ss_pred cccccCCcEeecCCCEEEEEEecC
Confidence 1 2479999999884
No 62
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.38 E-value=1e-12 Score=112.78 Aligned_cols=90 Identities=18% Similarity=0.166 Sum_probs=71.3
Q ss_pred CCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
+.+|||+|||+|.. +....+..+|+|+|+|+.|++.+++ +++++++|+ .+++ .+++||+|++..
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~---~~~~-~~~~fD~I~s~~- 117 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRA---EDFQ-HEEQFDVITSRA- 117 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecch---hhcc-ccCCccEEEehh-
Confidence 78999999999953 2334567899999999998876543 378999999 6664 356899999875
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
+.+...+++.+.++|||||.+++...
T Consensus 118 ---~~~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 118 ---LASLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred ---hhCHHHHHHHHHHhcCCCCEEEEEcC
Confidence 44677889999999999999887643
No 63
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.36 E-value=6.8e-12 Score=110.68 Aligned_cols=99 Identities=24% Similarity=0.354 Sum_probs=79.0
Q ss_pred CCCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCC-CCceeEEEeccc
Q 021661 148 PGVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFE-DNSFDVITNVVS 217 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~-~~sfDlVis~~v 217 (309)
++.+|||+|||+|.... ....+.+++++|+|+.+++.+++ ++++.+.|+ .+++.. .++||+|++..+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~D~i~~~~~ 121 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSV---EDLAEKGAKSFDVVTCMEV 121 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCH---HHhhcCCCCCccEEEehhH
Confidence 47899999999885432 11234579999999999887654 366777887 555533 378999999999
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
++|+.++..+++++.++|+|||.+++...+..
T Consensus 122 l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 153 (224)
T TIGR01983 122 LEHVPDPQAFIRACAQLLKPGGILFFSTINRT 153 (224)
T ss_pred HHhCCCHHHHHHHHHHhcCCCcEEEEEecCCC
Confidence 99999999999999999999999988877643
No 64
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.36 E-value=1.5e-12 Score=127.72 Aligned_cols=97 Identities=23% Similarity=0.319 Sum_probs=78.1
Q ss_pred CCCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhhCCC------CCcEEEecCCCCCCCCCCCCceeEEEeccchhc
Q 021661 148 PGVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 220 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~a~~------~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~ 220 (309)
++.+|||||||+|.... .+....+|+|+|+|+.|++.+++ +++++++|+.. ..+++++++||+|++..+++|
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~-~~~~~~~~~fD~I~~~~~l~~ 115 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTS-PDLNISDGSVDLIFSNWLLMY 115 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccc-cccCCCCCCEEEEehhhhHHh
Confidence 46799999999995432 22235699999999999987642 47899999831 246777889999999999999
Q ss_pred cCC--HHHHHHHHHhhcccCcEEEEEe
Q 021661 221 LTK--PIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 221 l~d--~~~~l~~i~rvLkpGG~lii~~ 245 (309)
+++ ..++++++.++|||||.+++..
T Consensus 116 l~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 116 LSDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 986 5789999999999999887754
No 65
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.35 E-value=4.9e-12 Score=110.63 Aligned_cols=91 Identities=15% Similarity=0.204 Sum_probs=70.4
Q ss_pred CCCCeEEEECCCcchhc---cCC-CCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEE
Q 021661 147 TPGVSILDLCSSWVSHF---PPG-YKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVIT 213 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~-~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVi 213 (309)
.++.+|||||||+|... ... .+.++|+++|++++|++.++++ ++++.+|+ .......++||+|+
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~---~~~~~~~~~fD~Ii 147 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDG---KRGLEKHAPFDAII 147 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCc---ccCCccCCCccEEE
Confidence 45789999999999533 222 2357999999999999877652 67888898 54433457899999
Q ss_pred eccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 214 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 214 s~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
+..++++++ +++.++|||||.+++.+.
T Consensus 148 ~~~~~~~~~------~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 148 VTAAASTIP------SALVRQLKDGGVLVIPVE 174 (205)
T ss_pred EccCcchhh------HHHHHhcCcCcEEEEEEc
Confidence 999888765 478899999999988654
No 66
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.33 E-value=2e-12 Score=112.16 Aligned_cols=99 Identities=16% Similarity=0.162 Sum_probs=77.0
Q ss_pred CCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCC---CCCCceeEEEe
Q 021661 149 GVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLP---FEDNSFDVITN 214 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp---~~~~sfDlVis 214 (309)
..+|||||||+|... ....|..+|+|+|+++.|++.+++ +++++++|+ ..++ ++++++|.|++
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~---~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDA---NELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCH---HHHHHhhCCCCceeEEEE
Confidence 569999999999543 445678899999999999987653 478999998 5443 45668999999
Q ss_pred ccchhccCC--------HHHHHHHHHhhcccCcEEEEEecCcch
Q 021661 215 VVSVDYLTK--------PIEVFKEMCQVLKPGGLAIVSFSNRCF 250 (309)
Q Consensus 215 ~~vl~~l~d--------~~~~l~~i~rvLkpGG~lii~~~~~~~ 250 (309)
++...|... ...++++++++|||||.+++.+.+...
T Consensus 94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~ 137 (194)
T TIGR00091 94 NFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPL 137 (194)
T ss_pred ECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHH
Confidence 876544322 157999999999999999888766443
No 67
>PTZ00146 fibrillarin; Provisional
Probab=99.33 E-value=2.6e-11 Score=110.39 Aligned_cols=161 Identities=17% Similarity=0.124 Sum_probs=97.4
Q ss_pred HHHHHHHHHhhCCCC-CCCCCeEEEECCCcchhc---cCC-CCCCeEEEEeCCHH----HHhhCC--CCCcEEEecCCCC
Q 021661 131 IAALTKYYSEVFPPS-NTPGVSILDLCSSWVSHF---PPG-YKQDRIVGMGMNEE----ELKRNP--VLTEYVVQDLNLN 199 (309)
Q Consensus 131 ~~~l~~~~~~~l~~~-~~~~~~ILDiGcG~g~~~---~~~-~~~~~v~giD~S~~----~l~~a~--~~i~~~~~D~~~~ 199 (309)
+.+|+..+..-+... ..++.+|||+|||+|... ... .+...|+++|+|++ |++.++ .++.+++.|+...
T Consensus 114 rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p 193 (293)
T PTZ00146 114 RSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYP 193 (293)
T ss_pred ccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccCh
Confidence 444554443333221 466889999999988533 222 34579999999986 556654 3688999998321
Q ss_pred CCCCCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHH--HHHHHh
Q 021661 200 PKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVG--AYFHYA 277 (309)
Q Consensus 200 ~~lp~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~--~~f~~~ 277 (309)
..++...++||+|++... ...+...++.++.++|||||.++|...... .+. ....+..+-. +.+ ++
T Consensus 194 ~~y~~~~~~vDvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~ika~~-------id~--g~~pe~~f~~ev~~L-~~ 261 (293)
T PTZ00146 194 QKYRMLVPMVDVIFADVA--QPDQARIVALNAQYFLKNGGHFIISIKANC-------IDS--TAKPEVVFASEVQKL-KK 261 (293)
T ss_pred hhhhcccCCCCEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEEEeccc-------ccc--CCCHHHHHHHHHHHH-HH
Confidence 112223457999999874 233445667799999999999988643221 111 1111111111 234 56
Q ss_pred CCCCCCceeeccCCCCCCCCcEEEEEEeC
Q 021661 278 GGYEPPQAVDISPNPGRSDPMYVVYSRKA 306 (309)
Q Consensus 278 ~Gf~~~~~~~~~~~~~~~~p~~~v~a~k~ 306 (309)
+||++++.+++.|. +.|. .+|++++.
T Consensus 262 ~GF~~~e~v~L~Py--~~~h-~~v~~~~~ 287 (293)
T PTZ00146 262 EGLKPKEQLTLEPF--ERDH-AVVIGVYR 287 (293)
T ss_pred cCCceEEEEecCCc--cCCc-EEEEEEEc
Confidence 89999888887553 3333 55555544
No 68
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.32 E-value=8.5e-12 Score=115.73 Aligned_cols=91 Identities=16% Similarity=0.222 Sum_probs=65.5
Q ss_pred CCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCC-------------CcEEEecCCCCCCCCCCCCceeEEE
Q 021661 148 PGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVL-------------TEYVVQDLNLNPKLPFEDNSFDVIT 213 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~-------------i~~~~~D~~~~~~lp~~~~sfDlVi 213 (309)
++.+|||||||+|... .....+.+|+|+|+|+.|++.++++ +.|.+.|+ +.+ +++||+|+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl---~~l---~~~fD~Vv 217 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL---ESL---SGKYDTVT 217 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch---hhc---CCCcCEEE
Confidence 4789999999999643 2333467999999999999877654 35666776 443 47899999
Q ss_pred eccchhccCCH--HHHHHHHHhhcccCcEEEEEec
Q 021661 214 NVVSVDYLTKP--IEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 214 s~~vl~~l~d~--~~~l~~i~rvLkpGG~lii~~~ 246 (309)
|..+++|+++. ..+++.+.+ +.+||. +|++.
T Consensus 218 ~~~vL~H~p~~~~~~ll~~l~~-l~~g~l-iIs~~ 250 (315)
T PLN02585 218 CLDVLIHYPQDKADGMIAHLAS-LAEKRL-IISFA 250 (315)
T ss_pred EcCEEEecCHHHHHHHHHHHHh-hcCCEE-EEEeC
Confidence 99999998763 346666665 455555 55554
No 69
>PLN03075 nicotianamine synthase; Provisional
Probab=99.30 E-value=1e-11 Score=113.37 Aligned_cols=95 Identities=8% Similarity=0.104 Sum_probs=77.2
Q ss_pred CCCeEEEECCCcc--hhc---cCCCCCCeEEEEeCCHHHHhhCCC----------CCcEEEecCCCCCCCCCCCCceeEE
Q 021661 148 PGVSILDLCSSWV--SHF---PPGYKQDRIVGMGMNEEELKRNPV----------LTEYVVQDLNLNPKLPFEDNSFDVI 212 (309)
Q Consensus 148 ~~~~ILDiGcG~g--~~~---~~~~~~~~v~giD~S~~~l~~a~~----------~i~~~~~D~~~~~~lp~~~~sfDlV 212 (309)
++.+|+|||||.| +.+ ....+.++++|+|+++++++.|++ +++|.++|+ .+.+...+.||+|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da---~~~~~~l~~FDlV 199 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADV---MDVTESLKEYDVV 199 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECch---hhcccccCCcCEE
Confidence 4789999999955 222 234688899999999999987654 388999998 5544334679999
Q ss_pred Eeccchhcc--CCHHHHHHHHHhhcccCcEEEEEec
Q 021661 213 TNVVSVDYL--TKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 213 is~~vl~~l--~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
++. +++++ .++.++++++++.|+|||.+++...
T Consensus 200 F~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 200 FLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred EEe-cccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 999 88887 6899999999999999999999763
No 70
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.30 E-value=8.8e-12 Score=109.62 Aligned_cols=94 Identities=13% Similarity=0.102 Sum_probs=73.0
Q ss_pred CCCeEEEECCCcchh-ccCCCCCCeEEEEeCCHHHHhhCC--------------------CCCcEEEecCCCCCCCCCC-
Q 021661 148 PGVSILDLCSSWVSH-FPPGYKQDRIVGMGMNEEELKRNP--------------------VLTEYVVQDLNLNPKLPFE- 205 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~-~~~~~~~~~v~giD~S~~~l~~a~--------------------~~i~~~~~D~~~~~~lp~~- 205 (309)
++.+|||+|||.|.. ...+..+.+|+|+|+|+.+++.+. ..++++++|+ .+++..
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~---~~~~~~~ 110 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDF---FALTAAD 110 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccC---CCCCccc
Confidence 367999999998843 334456889999999999998731 1377899999 565532
Q ss_pred CCceeEEEeccchhccCC--HHHHHHHHHhhcccCcEEEEE
Q 021661 206 DNSFDVITNVVSVDYLTK--PIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 206 ~~sfDlVis~~vl~~l~d--~~~~l~~i~rvLkpGG~lii~ 244 (309)
.+.||.|+-..+++|++. ....++.+.++|||||.+++.
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 357999999999999963 357999999999999965443
No 71
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.30 E-value=1.8e-11 Score=107.34 Aligned_cols=95 Identities=17% Similarity=0.216 Sum_probs=71.2
Q ss_pred CCCCeEEEECCCcchhc---cCC-CCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCC--------CCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHF---PPG-YKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLP--------FEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~-~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp--------~~~~sfDlVis 214 (309)
.++.+|||||||+|... ... .+.+.|+|+|+++ |.. ..+++++++|+ .+.+ +.+++||+|+|
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~~--~~~v~~i~~D~---~~~~~~~~i~~~~~~~~~D~V~S 123 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MDP--IVGVDFLQGDF---RDELVLKALLERVGDSKVQVVMS 123 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-ccC--CCCcEEEecCC---CChHHHHHHHHHhCCCCCCEEec
Confidence 44789999999999643 222 3457999999998 322 23489999999 5532 55788999999
Q ss_pred ccchhccCCH-----------HHHHHHHHhhcccCcEEEEEecC
Q 021661 215 VVSVDYLTKP-----------IEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 215 ~~vl~~l~d~-----------~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+.+.++..++ ..+|+++.++|||||.+++.+..
T Consensus 124 ~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 124 DMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred CCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 8777665432 46899999999999999886543
No 72
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.30 E-value=3.2e-12 Score=109.22 Aligned_cols=128 Identities=16% Similarity=0.258 Sum_probs=85.7
Q ss_pred CCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCCC------CcEEEecCCCCCCCCCCCCceeEEEeccchhc
Q 021661 148 PGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPVL------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 220 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~~------i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~ 220 (309)
.-.++||+|||.|.+... +....+++++|+|+.+++.|+++ +++.+.|+ ... .++++||+|+++.++++
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dv---p~~-~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADV---PEF-WPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-T---TT----SS-EEEEEEES-GGG
T ss_pred ccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcC---CCC-CCCCCeeEEEEehHhHc
Confidence 357999999999965433 33356999999999999988763 89999999 443 46789999999999999
Q ss_pred cCC---HHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCceeec
Q 021661 221 LTK---PIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDI 288 (309)
Q Consensus 221 l~d---~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~ 288 (309)
+.+ ...++..+...|+|||.+++.... .+....|.... ..+.+.+.|++ -+..++-+.+
T Consensus 119 L~~~~~L~~~l~~l~~~L~pgG~LV~g~~r----d~~c~~wgh~~---ga~tv~~~~~~--~~~~~~~~~~ 180 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAPGGHLVFGHAR----DANCRRWGHAA---GAETVLEMLQE--HLTEVERVEC 180 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEE-----HHHHHHTT-S-----HHHHHHHHHH--HSEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEEEEec----CCcccccCccc---chHHHHHHHHH--HhhheeEEEE
Confidence 975 457899999999999999886542 33444565432 34566666663 2555544444
No 73
>PRK14967 putative methyltransferase; Provisional
Probab=99.29 E-value=4.3e-11 Score=105.94 Aligned_cols=97 Identities=16% Similarity=0.226 Sum_probs=68.8
Q ss_pred CCCCeEEEECCCcchhccC--CCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSSWVSHFPP--GYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~--~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
.++.+|||+|||+|..... .....+|+++|+|+.+++.++++ +.++.+|+ .. .+++++||+|+++--
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~---~~-~~~~~~fD~Vi~npP 110 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDW---AR-AVEFRPFDVVVSNPP 110 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECch---hh-hccCCCeeEEEECCC
Confidence 3468999999998854321 12234999999999999876653 56777887 33 235678999999743
Q ss_pred hhccC---------------------CHHHHHHHHHhhcccCcEEEEEecC
Q 021661 218 VDYLT---------------------KPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 218 l~~l~---------------------d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
..... ....+++++.++|||||.+++..+.
T Consensus 111 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 111 YVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 22111 1356889999999999988875444
No 74
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.29 E-value=5.3e-11 Score=103.23 Aligned_cols=102 Identities=17% Similarity=0.130 Sum_probs=72.3
Q ss_pred HHHhhCCCCCCCCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCC-CCC
Q 021661 137 YYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPK-LPF 204 (309)
Q Consensus 137 ~~~~~l~~~~~~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~-lp~ 204 (309)
.+...+.. .++.+|||+|||+|.. +....+..+|+++|+|+.|++.++++ ++++.+|+ .. ++.
T Consensus 31 ~l~~~l~~--~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~---~~~~~~ 105 (196)
T PRK07402 31 LLISQLRL--EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSA---PECLAQ 105 (196)
T ss_pred HHHHhcCC--CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECch---HHHHhh
Confidence 33444442 4578999999999964 23334678999999999999877653 67888887 33 222
Q ss_pred CCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 205 EDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 205 ~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
....+|.|+... ..+...+++++.++|||||.+++...+
T Consensus 106 ~~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 106 LAPAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred CCCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 223367765532 235689999999999999999988765
No 75
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.29 E-value=4.2e-11 Score=116.22 Aligned_cols=145 Identities=19% Similarity=0.233 Sum_probs=98.6
Q ss_pred CCCCeEEEECCCcchh---ccCC-CCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCC----CCCCcee
Q 021661 147 TPGVSILDLCSSWVSH---FPPG-YKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLP----FEDNSFD 210 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~---~~~~-~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp----~~~~sfD 210 (309)
.++.+|||+|||.|.. +... ...++|+++|+++.+++.++++ ++++++|+ ..++ ...++||
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~---~~~~~~~~~~~~~fD 327 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADS---RNLLELKPQWRGYFD 327 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCCh---hhcccccccccccCC
Confidence 4578999999998843 2222 3457999999999999877653 67888998 5554 3457899
Q ss_pred EEEec------cchhccCC----------------HHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhH
Q 021661 211 VITNV------VSVDYLTK----------------PIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVM 268 (309)
Q Consensus 211 lVis~------~vl~~l~d----------------~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~ 268 (309)
.|++. .++.+-++ ..++|.++.++|||||.++.++..-. ..++..
T Consensus 328 ~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~-------------~~Ene~ 394 (434)
T PRK14901 328 RILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH-------------PAENEA 394 (434)
T ss_pred EEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC-------------hhhHHH
Confidence 99963 34544433 35789999999999999988865421 223334
Q ss_pred hHHHHHHHhCCCCCCceee-ccCCCCCCCCcEEEEEEeCC
Q 021661 269 IVGAYFHYAGGYEPPQAVD-ISPNPGRSDPMYVVYSRKAS 307 (309)
Q Consensus 269 ~~~~~f~~~~Gf~~~~~~~-~~~~~~~~~p~~~v~a~k~~ 307 (309)
.+..++++..+|+...... .-|..++.|.||+..-+|.+
T Consensus 395 ~v~~~l~~~~~~~~~~~~~~~~P~~~~~dGfF~a~l~k~~ 434 (434)
T PRK14901 395 QIEQFLARHPDWKLEPPKQKIWPHRQDGDGFFMAVLRKKS 434 (434)
T ss_pred HHHHHHHhCCCcEecCCCCccCCCCCCCCcEEEEEEEeCC
Confidence 4455555555665332211 33444568999999988864
No 76
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.29 E-value=4.2e-12 Score=109.26 Aligned_cols=93 Identities=18% Similarity=0.228 Sum_probs=70.8
Q ss_pred CCCeEEEECCCcch-hccCCCCCCeEEEEeCCHHHHhhCCC-------CCcEEEecCCCCCCCCCCCCceeEEEeccchh
Q 021661 148 PGVSILDLCSSWVS-HFPPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 219 (309)
Q Consensus 148 ~~~~ILDiGcG~g~-~~~~~~~~~~v~giD~S~~~l~~a~~-------~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~ 219 (309)
++.++||+|||.|+ .+.++..+..|+++|+|+..++.+++ .++..+.|+ ....++ +.||+|++..+++
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl---~~~~~~-~~yD~I~st~v~~ 105 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADL---NDFDFP-EEYDFIVSTVVFM 105 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BG---CCBS-T-TTEEEEEEESSGG
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecc---hhcccc-CCcCEEEEEEEec
Confidence 36799999999884 34445568899999999999886443 277889998 666664 5799999999999
Q ss_pred ccC--CHHHHHHHHHhhcccCcEEEEE
Q 021661 220 YLT--KPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 220 ~l~--d~~~~l~~i~rvLkpGG~lii~ 244 (309)
|++ ...+++++|...++|||++++.
T Consensus 106 fL~~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 106 FLQRELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp GS-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 995 3468999999999999987664
No 77
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.28 E-value=2.1e-11 Score=113.03 Aligned_cols=92 Identities=8% Similarity=0.046 Sum_probs=72.8
Q ss_pred CCCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.+..+|||||||+|.. +...+|..+++++|. +.+++.+++ +++++.+|+ .+.+++ .+|+|++
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~---~~~~~~--~~D~v~~ 221 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDI---YKESYP--EADAVLF 221 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCc---cCCCCC--CCCEEEe
Confidence 4468999999999854 345568889999998 788887654 378999998 544444 3699999
Q ss_pred ccchhccCCH--HHHHHHHHhhcccCcEEEEE
Q 021661 215 VVSVDYLTKP--IEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 215 ~~vl~~l~d~--~~~l~~i~rvLkpGG~lii~ 244 (309)
..++|+..+. .++|++++++|||||.++|.
T Consensus 222 ~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 222 CRILYSANEQLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred EhhhhcCChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9999988654 57999999999999977554
No 78
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.27 E-value=1.8e-11 Score=104.57 Aligned_cols=93 Identities=22% Similarity=0.078 Sum_probs=70.4
Q ss_pred CCeEEEECCCcchhccCC-CCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCCCCCceeEEEeccchhc
Q 021661 149 GVSILDLCSSWVSHFPPG-YKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 220 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~~-~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~ 220 (309)
+.+|||+|||+|...... ..+.+|+++|+|++|++.++++ ++++.+|+ ...+ .++||+|+++..+++
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~--~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDL---FKGV--RGKFDVILFNPPYLP 94 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccc---cccc--CCcccEEEECCCCCC
Confidence 578999999998543222 2233899999999999987764 56788887 4433 458999999987766
Q ss_pred cCC---------------------HHHHHHHHHhhcccCcEEEEEec
Q 021661 221 LTK---------------------PIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 221 l~d---------------------~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
..+ ...+++++.++|||||.+++..+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS 141 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence 643 35689999999999998877644
No 79
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.26 E-value=2.4e-11 Score=114.07 Aligned_cols=94 Identities=12% Similarity=0.064 Sum_probs=72.5
Q ss_pred CCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCCCCCceeEEEeccch
Q 021661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVVSV 218 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~~~~sfDlVis~~vl 218 (309)
..+|||+|||+|.. +....+..+|+++|+|+.|++.++++ .+++..|. .. ..+++||+|+|+..+
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~---~~--~~~~~fDlIvsNPPF 271 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNV---FS--DIKGRFDMIISNPPF 271 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccc---cc--ccCCCccEEEECCCc
Confidence 45899999999854 34445677999999999999988753 45666676 22 125689999999888
Q ss_pred hccC-----CHHHHHHHHHhhcccCcEEEEEecC
Q 021661 219 DYLT-----KPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 219 ~~l~-----d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
|+.. ...++++++.+.|||||.++|....
T Consensus 272 H~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 272 HDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred cCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 8632 3578999999999999988876554
No 80
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.25 E-value=2.7e-11 Score=114.76 Aligned_cols=106 Identities=13% Similarity=0.159 Sum_probs=77.4
Q ss_pred HHHHHhhCCCCCCCCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCCC-----------CcEEEecCCCCC
Q 021661 135 TKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVL-----------TEYVVQDLNLNP 200 (309)
Q Consensus 135 ~~~~~~~l~~~~~~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~-----------i~~~~~D~~~~~ 200 (309)
.+++.+.++. ....+|||+|||+|.. +....|..+|+++|+|+.|++.++++ ++++..|. .
T Consensus 217 trllL~~lp~--~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~---l 291 (378)
T PRK15001 217 ARFFMQHLPE--NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNA---L 291 (378)
T ss_pred HHHHHHhCCc--ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccc---c
Confidence 3455666664 2246999999998843 34556788999999999999987753 36666776 2
Q ss_pred CCCCCCCceeEEEeccchhccC---C--HHHHHHHHHhhcccCcEEEEEec
Q 021661 201 KLPFEDNSFDVITNVVSVDYLT---K--PIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 201 ~lp~~~~sfDlVis~~vl~~l~---d--~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
. ..++++||+|+|+--+|... + ..++++++.++|||||.+++...
T Consensus 292 ~-~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 292 S-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred c-cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 2 12346899999987665432 2 35789999999999998888743
No 81
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.25 E-value=4.1e-11 Score=101.72 Aligned_cols=95 Identities=21% Similarity=0.262 Sum_probs=70.8
Q ss_pred CCeEEEECCCcch---hccCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 149 GVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 149 ~~~ILDiGcG~g~---~~~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
..+|||+|||+|. .+....+..+|+++|+|+.+++.++++ ++++..|+. +.+ ++++||+|+++--
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~--~~~--~~~~fD~Iv~NPP 107 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLF--EAL--PDGKFDLIVSNPP 107 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTT--TTC--CTTCEEEEEE---
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccc--ccc--cccceeEEEEccc
Confidence 6799999999883 334455666899999999999987653 567888872 223 3688999999976
Q ss_pred hhccCC-----HHHHHHHHHhhcccCcEEEEEecC
Q 021661 218 VDYLTK-----PIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 218 l~~l~d-----~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
++.-.+ ..+++++..+.|||||.+++....
T Consensus 108 ~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 108 FHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred hhcccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 554433 478999999999999988765543
No 82
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.24 E-value=2.2e-11 Score=107.75 Aligned_cols=87 Identities=13% Similarity=0.139 Sum_probs=64.9
Q ss_pred CCCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 148 PGVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
++.+|||||||+|.... .+..+.+|+|+|+|+.|++.|++ ++++.++|+ .. .+++||+|++..+
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~---~~---~~~~fD~v~~~~~ 136 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL---ES---LLGRFDTVVCLDV 136 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc---hh---ccCCcCEEEEcch
Confidence 46799999999995432 22235679999999999987765 256777775 33 3578999999999
Q ss_pred hhccCC--HHHHHHHHHhhcccCcE
Q 021661 218 VDYLTK--PIEVFKEMCQVLKPGGL 240 (309)
Q Consensus 218 l~~l~d--~~~~l~~i~rvLkpGG~ 240 (309)
++|+++ ...+++++.+.+++++.
T Consensus 137 l~~~~~~~~~~~l~~l~~~~~~~~~ 161 (230)
T PRK07580 137 LIHYPQEDAARMLAHLASLTRGSLI 161 (230)
T ss_pred hhcCCHHHHHHHHHHHHhhcCCeEE
Confidence 999864 46788898887654333
No 83
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.23 E-value=2.4e-11 Score=106.18 Aligned_cols=93 Identities=18% Similarity=0.225 Sum_probs=67.2
Q ss_pred CeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCCC--CcEEEecCCC--CCCCCCC--CCceeEEEeccchhccC
Q 021661 150 VSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPVL--TEYVVQDLNL--NPKLPFE--DNSFDVITNVVSVDYLT 222 (309)
Q Consensus 150 ~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~~--i~~~~~D~~~--~~~lp~~--~~sfDlVis~~vl~~l~ 222 (309)
..++|+|||+|....- +....+|+|+|+|+.||+.+++. +.+...-... .+..++. ++|.|+|++..++||+
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF- 113 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF- 113 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh-
Confidence 4899999999943322 22256899999999999999875 2221111100 0223333 8999999999999999
Q ss_pred CHHHHHHHHHhhcccCc-EEEE
Q 021661 223 KPIEVFKEMCQVLKPGG-LAIV 243 (309)
Q Consensus 223 d~~~~l~~i~rvLkpGG-~lii 243 (309)
|.+.+.++++|+||+.| ++.+
T Consensus 114 dle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 114 DLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred chHHHHHHHHHHcCCCCCEEEE
Confidence 88999999999999977 5544
No 84
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.23 E-value=5e-11 Score=104.84 Aligned_cols=91 Identities=19% Similarity=0.194 Sum_probs=70.0
Q ss_pred CCCCeEEEECCCcchhc---cCC-CCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHF---PPG-YKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~-~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.++.+|||||||+|... ... .+.++|+++|+++++++.+++ +++++++|+ .....+.+.||+|++
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~---~~~~~~~~~fD~I~~ 151 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDG---TLGYEENAPYDRIYV 151 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCc---ccCCCcCCCcCEEEE
Confidence 45889999999999543 222 345799999999999988765 378899998 554445678999999
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
....++++ +.+.+.|||||.+++...
T Consensus 152 ~~~~~~~~------~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 152 TAAGPDIP------KPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred CCCcccch------HHHHHhhCCCcEEEEEEc
Confidence 88766543 467778999999888654
No 85
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.23 E-value=5e-11 Score=110.29 Aligned_cols=120 Identities=13% Similarity=0.147 Sum_probs=79.9
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEECCCcchhc---cCCCC-CCeEEEEeCCHHHHhhCCCC---------CcEEEecCC
Q 021661 131 IAALTKYYSEVFPPSNTPGVSILDLCSSWVSHF---PPGYK-QDRIVGMGMNEEELKRNPVL---------TEYVVQDLN 197 (309)
Q Consensus 131 ~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~---~~~~~-~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~ 197 (309)
.....+.+...++ ++.+|||+|||+|... ....+ ..+|+|+|+|++||+.+.++ +.++++|+
T Consensus 50 l~~~~~~ia~~~~----~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~- 124 (301)
T TIGR03438 50 LERHADEIAAATG----AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADF- 124 (301)
T ss_pred HHHHHHHHHHhhC----CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcc-
Confidence 3334444444443 3679999999999532 22333 57899999999999876542 45689998
Q ss_pred CCCC-CCCCCC----ceeEEEeccchhccC--CHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhh
Q 021661 198 LNPK-LPFEDN----SFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISI 257 (309)
Q Consensus 198 ~~~~-lp~~~~----sfDlVis~~vl~~l~--d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~ 257 (309)
.. +++... ...++++..++.+++ +...+|++++++|+|||.++|.+............
T Consensus 125 --~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~~~~~~~~a 189 (301)
T TIGR03438 125 --TQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVKDPAVLEAA 189 (301)
T ss_pred --cchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCCCHHHHHHh
Confidence 43 333332 233455556788875 35679999999999999999987654444333333
No 86
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.22 E-value=1.5e-10 Score=106.28 Aligned_cols=94 Identities=17% Similarity=0.306 Sum_probs=71.0
Q ss_pred CeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEec--
Q 021661 150 VSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNV-- 215 (309)
Q Consensus 150 ~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis~-- 215 (309)
.+|||+|||+|.. +....+..+|+|+|+|+.+++.|+++ ++++++|+ .+ ++++++||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~---~~-~~~~~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNL---FE-PLAGQKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch---hc-cCcCCCccEEEECCC
Confidence 6999999999853 33345667999999999999887753 67888988 33 3344579999996
Q ss_pred -----------cchhccC------------CHHHHHHHHHhhcccCcEEEEEecC
Q 021661 216 -----------VSVDYLT------------KPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 216 -----------~vl~~l~------------d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
.++.|-+ ....+++++.+.|+|||.+++++.+
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 1222222 3467899999999999999998764
No 87
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.21 E-value=2.1e-10 Score=111.05 Aligned_cols=143 Identities=17% Similarity=0.251 Sum_probs=91.7
Q ss_pred CCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCC--CCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLP--FEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp--~~~~sfDlVis 214 (309)
.++.+|||+|||+|... ....+..+|+++|+|+.|++.++++ ++++++|+ ..++ +..++||.|++
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~---~~~~~~~~~~~fD~Vl~ 319 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDA---RDPAQWWDGQPFDRILL 319 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCc---ccchhhcccCCCCEEEE
Confidence 46889999999988532 2333447999999999999887654 56888998 5543 34568999994
Q ss_pred cc------chh------ccCC----------HHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHH
Q 021661 215 VV------SVD------YLTK----------PIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGA 272 (309)
Q Consensus 215 ~~------vl~------~l~d----------~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~ 272 (309)
.- ++. |... ..++|.++.++|||||.+++++...... +....+..
T Consensus 320 D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~-------------Ene~~v~~ 386 (427)
T PRK10901 320 DAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPE-------------ENEQQIKA 386 (427)
T ss_pred CCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh-------------hCHHHHHH
Confidence 21 221 1111 2478999999999999999887642111 11122222
Q ss_pred HHHHhCCCCCCc-------eeeccCCCCCCCCcEEEEEEe
Q 021661 273 YFHYAGGYEPPQ-------AVDISPNPGRSDPMYVVYSRK 305 (309)
Q Consensus 273 ~f~~~~Gf~~~~-------~~~~~~~~~~~~p~~~v~a~k 305 (309)
++.+..+|+... ...+.|..++.|.||+..-+|
T Consensus 387 ~l~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l~k 426 (427)
T PRK10901 387 FLARHPDAELLDTGTPQQPGRQLLPGEEDGDGFFYALLIK 426 (427)
T ss_pred HHHhCCCCEEecCCCCCCCceEECCCCCCCCCeEEEEEEE
Confidence 333223333211 134455556789999988877
No 88
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.20 E-value=8.4e-11 Score=103.53 Aligned_cols=92 Identities=14% Similarity=0.114 Sum_probs=69.3
Q ss_pred CCCCeEEEECCCcchhcc---CC-CCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHFP---PG-YKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~---~~-~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.++.+|||||||+|.... .. .+.++|+++|+++++++.|++ +++++++|+ .......++||+|++
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~---~~~~~~~~~fD~Ii~ 152 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDG---TQGWEPLAPYDRIYV 152 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCc---ccCCcccCCCCEEEE
Confidence 458899999999995432 22 234679999999999998765 377889998 444334468999999
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
.....++ .+.+.+.|||||.+++.+..
T Consensus 153 ~~~~~~~------~~~~~~~L~~gG~lv~~~~~ 179 (215)
T TIGR00080 153 TAAGPKI------PEALIDQLKEGGILVMPVGE 179 (215)
T ss_pred cCCcccc------cHHHHHhcCcCcEEEEEEcC
Confidence 8766554 35688899999999886543
No 89
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.20 E-value=2.3e-10 Score=110.77 Aligned_cols=98 Identities=21% Similarity=0.208 Sum_probs=71.1
Q ss_pred CCCCeEEEECCCcch---hccCCCCCCeEEEEeCCHHHHhhCCCC-----C--cE--EEecCCCCCCCCC--CCCceeEE
Q 021661 147 TPGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKRNPVL-----T--EY--VVQDLNLNPKLPF--EDNSFDVI 212 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~---~~~~~~~~~~v~giD~S~~~l~~a~~~-----i--~~--~~~D~~~~~~lp~--~~~sfDlV 212 (309)
.++.+|||+|||.|. .+....+.++|+|+|+|+++++.++++ + .+ ..+|. ...+. ++++||.|
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~---~~~~~~~~~~~fD~V 313 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDG---RGPSQWAENEQFDRI 313 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccc---ccccccccccccCEE
Confidence 457899999999883 233333467999999999999877654 2 23 44555 33332 45789999
Q ss_pred Eec------cchhccCC----------------HHHHHHHHHhhcccCcEEEEEecC
Q 021661 213 TNV------VSVDYLTK----------------PIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 213 is~------~vl~~l~d----------------~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
++. .++++.++ ..++|.++.++|||||.+++++..
T Consensus 314 llDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs 370 (426)
T TIGR00563 314 LLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCS 370 (426)
T ss_pred EEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 952 35655544 357999999999999999998775
No 90
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.20 E-value=6.4e-11 Score=104.53 Aligned_cols=94 Identities=12% Similarity=0.089 Sum_probs=72.8
Q ss_pred CCCeEEEECCCcchh-ccCCCCCCeEEEEeCCHHHHhhCC--------------------CCCcEEEecCCCCCCCCCC-
Q 021661 148 PGVSILDLCSSWVSH-FPPGYKQDRIVGMGMNEEELKRNP--------------------VLTEYVVQDLNLNPKLPFE- 205 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~-~~~~~~~~~v~giD~S~~~l~~a~--------------------~~i~~~~~D~~~~~~lp~~- 205 (309)
++.+|||+|||.|.. ...+..+.+|+|+|+|+.+++.+. .++++.++|+ .+++..
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~---~~l~~~~ 113 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDF---FALTAAD 113 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcc---cCCCccc
Confidence 367999999998843 334456889999999999998641 1367889998 565432
Q ss_pred CCceeEEEeccchhccCC--HHHHHHHHHhhcccCcE-EEEE
Q 021661 206 DNSFDVITNVVSVDYLTK--PIEVFKEMCQVLKPGGL-AIVS 244 (309)
Q Consensus 206 ~~sfDlVis~~vl~~l~d--~~~~l~~i~rvLkpGG~-lii~ 244 (309)
.+.||+|+-..+++|++. ..++++.+.++|||||. +++.
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~ 155 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVT 155 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 357999999999999963 46899999999999995 4433
No 91
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.19 E-value=1.4e-10 Score=99.90 Aligned_cols=95 Identities=19% Similarity=0.218 Sum_probs=68.3
Q ss_pred CCCCeEEEECCCcchhcc----CCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCC--------CCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHFP----PGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLP--------FEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~----~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp--------~~~~sfDlVis 214 (309)
.++.+|||+|||+|.... ...+..+|+|+|+|+.+ ...+++++++|+ .+.+ +++++||+|++
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---~~~~i~~~~~d~---~~~~~~~~l~~~~~~~~~D~V~~ 104 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---PIENVDFIRGDF---TDEEVLNKIRERVGDDKVDVVMS 104 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---cCCCceEEEeeC---CChhHHHHHHHHhCCCCccEEEc
Confidence 458899999999985432 22345689999999976 224588899998 4432 34668999998
Q ss_pred ccch--------hcc---CCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 215 VVSV--------DYL---TKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 215 ~~vl--------~~l---~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
.... +|. .+...++.++.++|+|||.+++....
T Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 105 DAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred CCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 6432 221 12368999999999999999887543
No 92
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.17 E-value=3.6e-10 Score=100.52 Aligned_cols=140 Identities=18% Similarity=0.197 Sum_probs=100.2
Q ss_pred CCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCC--CCCCceeEEE
Q 021661 148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLP--FEDNSFDVIT 213 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp--~~~~sfDlVi 213 (309)
...+|||+|||.|.. +....+..+|+|+|+.++|.+.|+++ +++++.|+ .++. ....+||+|+
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di---~~~~~~~~~~~fD~Ii 120 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADI---KEFLKALVFASFDLII 120 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhH---HHhhhcccccccCEEE
Confidence 378999999998843 23333568999999999999988764 88999999 4442 3345799999
Q ss_pred eccchh----------------cc--CCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHH
Q 021661 214 NVVSVD----------------YL--TKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFH 275 (309)
Q Consensus 214 s~~vl~----------------~l--~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~ 275 (309)
|+--.. |. .+.+++++...++|||||.+.+-.+. +.+.-+-+.+
T Consensus 121 ~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~-----------------erl~ei~~~l- 182 (248)
T COG4123 121 CNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP-----------------ERLAEIIELL- 182 (248)
T ss_pred eCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH-----------------HHHHHHHHHH-
Confidence 982111 11 24578999999999999988765331 1111122223
Q ss_pred HhCCCCCCceeeccCCCCCCCCcEEEEEEeCCC
Q 021661 276 YAGGYEPPQAVDISPNPGRSDPMYVVYSRKAST 308 (309)
Q Consensus 276 ~~~Gf~~~~~~~~~~~~~~~~p~~~v~a~k~~~ 308 (309)
...+|.+.++..+-|..+..-....|-++|-+.
T Consensus 183 ~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k~~~ 215 (248)
T COG4123 183 KSYNLEPKRIQFVYPKIGKAANRVLVEAIKGGK 215 (248)
T ss_pred HhcCCCceEEEEecCCCCCcceEEEEEEecCCC
Confidence 346799999999988887777778888888654
No 93
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.16 E-value=1.3e-10 Score=108.87 Aligned_cols=99 Identities=20% Similarity=0.241 Sum_probs=77.1
Q ss_pred CCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
.++.+|||+|||+|..+ ..+..+.+++|+|+++.|++.++++ ++++++|+ .++|+.+++||+|+++--
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~---~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDA---TKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecch---hcCCcccCCCCEEEECCC
Confidence 45789999999999654 3334567999999999999876654 57889999 788887889999999632
Q ss_pred hh------c--cCC-HHHHHHHHHhhcccCcEEEEEecCc
Q 021661 218 VD------Y--LTK-PIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 218 l~------~--l~d-~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
.. . ..+ ..++++++.++|||||.+++.+++.
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 11 1 111 4789999999999999998877754
No 94
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.16 E-value=8.1e-11 Score=112.03 Aligned_cols=95 Identities=11% Similarity=0.077 Sum_probs=69.4
Q ss_pred CCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCC-CCCceeEEEeccc
Q 021661 149 GVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPF-EDNSFDVITNVVS 217 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~-~~~sfDlVis~~v 217 (309)
+.+|||+|||+|... ....+..+|+|+|+|+.|++.++++ ++++++|+ .+..+ ..++||+|+|+--
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl---~e~~l~~~~~FDLIVSNPP 328 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSW---FDTDMPSEGKWDIIVSNPP 328 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcch---hccccccCCCccEEEECCC
Confidence 569999999999543 3345778999999999999988764 67889998 33222 2457999999641
Q ss_pred hh-----cc----------------CC----HHHHHHHHHhhcccCcEEEEEec
Q 021661 218 VD-----YL----------------TK----PIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 218 l~-----~l----------------~d----~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
.. .+ .| ...+++++.+.|+|||.++++..
T Consensus 329 YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG 382 (423)
T PRK14966 329 YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG 382 (423)
T ss_pred CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 10 00 01 24677888899999999988765
No 95
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.16 E-value=2.9e-10 Score=101.87 Aligned_cols=117 Identities=20% Similarity=0.292 Sum_probs=82.0
Q ss_pred CCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
+.+|||+|||+|.. +....+..+++|+|+|+.+++.++++ ++++++|+ .. ++++++||+|+++.-
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~---~~-~~~~~~fD~Vi~npP 163 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDW---FE-PLPGGKFDLIVSNPP 163 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch---hc-cCcCCceeEEEECCC
Confidence 56999999998854 33345677999999999999987653 67888888 43 345678999998632
Q ss_pred hh------ccC--------------------CHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHH
Q 021661 218 VD------YLT--------------------KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVG 271 (309)
Q Consensus 218 l~------~l~--------------------d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~ 271 (309)
.. .+. ....+++++.++|||||.++++... .....+.
T Consensus 164 y~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~-----------------~~~~~~~ 226 (251)
T TIGR03534 164 YIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY-----------------DQGEAVR 226 (251)
T ss_pred CCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc-----------------cHHHHHH
Confidence 21 111 1246789999999999999887531 1123345
Q ss_pred HHHHHhCCCCCCceee
Q 021661 272 AYFHYAGGYEPPQAVD 287 (309)
Q Consensus 272 ~~f~~~~Gf~~~~~~~ 287 (309)
+++. ..||..++...
T Consensus 227 ~~l~-~~gf~~v~~~~ 241 (251)
T TIGR03534 227 ALFE-AAGFADVETRK 241 (251)
T ss_pred HHHH-hCCCCceEEEe
Confidence 5554 37888776544
No 96
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.16 E-value=1.2e-10 Score=110.21 Aligned_cols=101 Identities=17% Similarity=0.234 Sum_probs=78.4
Q ss_pred CCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCC--CCCCCceeEEEe
Q 021661 148 PGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKL--PFEDNSFDVITN 214 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~l--p~~~~sfDlVis 214 (309)
.+..+||||||+|..+ +...|...++|+|+++.|++.+.+ ++.++++|+ ..+ .++++++|.|++
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA---~~ll~~~~~~s~D~I~l 198 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDA---RLLLELLPSNSVEKIFV 198 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH---HHhhhhCCCCceeEEEE
Confidence 3569999999999543 445678899999999999876543 478999998 443 467899999998
Q ss_pred ccchhccCCH------HHHHHHHHhhcccCcEEEEEecCcchh
Q 021661 215 VVSVDYLTKP------IEVFKEMCQVLKPGGLAIVSFSNRCFW 251 (309)
Q Consensus 215 ~~vl~~l~d~------~~~l~~i~rvLkpGG~lii~~~~~~~~ 251 (309)
++...|.... ..+++++.|+|||||.+.+.+......
T Consensus 199 nFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~ 241 (390)
T PRK14121 199 HFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYF 241 (390)
T ss_pred eCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHH
Confidence 7655443222 589999999999999999887765443
No 97
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.16 E-value=2e-10 Score=111.77 Aligned_cols=156 Identities=18% Similarity=0.195 Sum_probs=93.3
Q ss_pred CCCCeEEEECCCcchh---ccC-CCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSH---FPP-GYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~---~~~-~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.++.+|||+|||+|.. +.. ....++|+++|+|+.|++.++++ ++++++|+ ..++ ++++||+|++
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da---~~~~-~~~~fD~Vl~ 324 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDA---RSFS-PEEQPDAILL 324 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcc---cccc-cCCCCCEEEE
Confidence 4578999999998842 222 23456999999999999877653 67888998 5554 4568999995
Q ss_pred c------cchhccC----------------CHHHHHHHHHhhcccCcEEEEEecCcc--hhHHHhhhhhcCC-CCchhHh
Q 021661 215 V------VSVDYLT----------------KPIEVFKEMCQVLKPGGLAIVSFSNRC--FWTKAISIWTSTG-DADHVMI 269 (309)
Q Consensus 215 ~------~vl~~l~----------------d~~~~l~~i~rvLkpGG~lii~~~~~~--~~~~~~~~w~~~~-~~~h~~~ 269 (309)
. .++..-+ ...++|.++.++|||||.+++++.... -....+..+.... +...+..
T Consensus 325 D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~ 404 (445)
T PRK14904 325 DAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRHPEFSAEPS 404 (445)
T ss_pred cCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEEecc
Confidence 2 1221111 124689999999999999999887532 2222333332221 1111110
Q ss_pred HH---HHHHHhCCCCCCceeeccCCCC-CCCCcEEEEEEeCCC
Q 021661 270 VG---AYFHYAGGYEPPQAVDISPNPG-RSDPMYVVYSRKAST 308 (309)
Q Consensus 270 ~~---~~f~~~~Gf~~~~~~~~~~~~~-~~~p~~~v~a~k~~~ 308 (309)
.. ..+... ......+.+.|... +.|++|+..-+|.++
T Consensus 405 ~~~l~~~~~~~--~~~~~~~~~~P~~~~~~dGfF~a~l~k~~~ 445 (445)
T PRK14904 405 PGSLPEPFHEV--AHPKGAILTLPGEHEGFDGGFAQRLRKNAG 445 (445)
T ss_pred ccccccccccc--cCCCCcEEECCCCCCCCCcEEEEEEEecCC
Confidence 00 011100 00111233444433 569999999999763
No 98
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.15 E-value=2.5e-10 Score=104.96 Aligned_cols=91 Identities=15% Similarity=0.166 Sum_probs=66.9
Q ss_pred CCCeEEEECCCcchhcc--CCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEecc
Q 021661 148 PGVSILDLCSSWVSHFP--PGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVV 216 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~--~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis~~ 216 (309)
++.+|||+|||+|.... ......+|+|+|+|+.|++.++++ +.+...|. .+..+++||+|+++.
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~-----~~~~~~~fDlVvan~ 233 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYL-----EQPIEGKADVIVANI 233 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccc-----ccccCCCceEEEEec
Confidence 47899999999985432 123345899999999999988765 22333332 223456899999987
Q ss_pred chhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 217 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 217 vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
..+. ...++.++.++|||||.++++..
T Consensus 234 ~~~~---l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 234 LAEV---IKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred CHHH---HHHHHHHHHHHcCCCcEEEEEeC
Confidence 6543 46789999999999999998744
No 99
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.14 E-value=3.2e-10 Score=104.10 Aligned_cols=95 Identities=17% Similarity=0.282 Sum_probs=70.2
Q ss_pred CCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEecc
Q 021661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVV 216 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis~~ 216 (309)
+.+|||+|||+|.. +....+..+|+|+|+|+.+++.|+++ ++++++|+. +. +++++||+|+++-
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~--~~--~~~~~fD~Iv~NP 197 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLF--AA--LPGRKYDLIVSNP 197 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchh--hc--cCCCCccEEEECC
Confidence 56999999998853 33345678999999999999987653 678889972 22 3456799999961
Q ss_pred ------chhcc-----CC--------------HHHHHHHHHhhcccCcEEEEEecC
Q 021661 217 ------SVDYL-----TK--------------PIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 217 ------vl~~l-----~d--------------~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
.+.++ .+ ...+++++.++|||||.+++++.+
T Consensus 198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~ 253 (284)
T TIGR03533 198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN 253 (284)
T ss_pred CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 11111 11 257789999999999999998764
No 100
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.12 E-value=9.7e-11 Score=109.34 Aligned_cols=104 Identities=27% Similarity=0.451 Sum_probs=71.3
Q ss_pred CCCeEEEECCCcchhccC--CCCCCeEEEEeCCHHHHhhCCCC------------------CcEEEecCCCC---CCCCC
Q 021661 148 PGVSILDLCSSWVSHFPP--GYKQDRIVGMGMNEEELKRNPVL------------------TEYVVQDLNLN---PKLPF 204 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~--~~~~~~v~giD~S~~~l~~a~~~------------------i~~~~~D~~~~---~~lp~ 204 (309)
++.+|||||||-|.-+.. ...-..++|+|+|...|+.|+++ ..|+.+|.... ..++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 688999999996643322 22456999999999999877653 45677776321 11222
Q ss_pred CCCceeEEEeccchhccC----CHHHHHHHHHhhcccCcEEEEEecCcchh
Q 021661 205 EDNSFDVITNVVSVDYLT----KPIEVFKEMCQVLKPGGLAIVSFSNRCFW 251 (309)
Q Consensus 205 ~~~sfDlVis~~vl~~l~----d~~~~l~~i~rvLkpGG~lii~~~~~~~~ 251 (309)
....||+|.|.++||+.= ....+|+++...|||||.++.++++...+
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i 192 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEI 192 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHH
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHH
Confidence 335899999999999973 24679999999999999999999875544
No 101
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.11 E-value=1.9e-10 Score=103.60 Aligned_cols=93 Identities=20% Similarity=0.236 Sum_probs=63.8
Q ss_pred CCCeEEEECCCcchhccC--CCCCCeEEEEeCCHHHHhhCCCCCcEEEe-cCCCCCCCCCCCCceeEEEeccchhccCCH
Q 021661 148 PGVSILDLCSSWVSHFPP--GYKQDRIVGMGMNEEELKRNPVLTEYVVQ-DLNLNPKLPFEDNSFDVITNVVSVDYLTKP 224 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~--~~~~~~v~giD~S~~~l~~a~~~i~~~~~-D~~~~~~lp~~~~sfDlVis~~vl~~l~d~ 224 (309)
++.+|||+|||+|..... .....+|+|+|+|+.|++.|+++...-.. +. ..++..+.+||+|+++...+ ..
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~---~~~~~~~~~fD~Vvani~~~---~~ 192 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELN---VYLPQGDLKADVIVANILAN---PL 192 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCce---EEEccCCCCcCEEEEcCcHH---HH
Confidence 478999999999854321 22233699999999999998876322111 11 11222222799999976433 24
Q ss_pred HHHHHHHHhhcccCcEEEEEec
Q 021661 225 IEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 225 ~~~l~~i~rvLkpGG~lii~~~ 246 (309)
..+++++.++|||||.++++..
T Consensus 193 ~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 193 LELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred HHHHHHHHHhcCCCcEEEEEEC
Confidence 6789999999999999998743
No 102
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.11 E-value=2.4e-10 Score=86.20 Aligned_cols=91 Identities=24% Similarity=0.306 Sum_probs=73.0
Q ss_pred eEEEECCCcchhccCC--CCCCeEEEEeCCHHHHhhCC--------CCCcEEEecCCCCCCCCC-CCCceeEEEeccchh
Q 021661 151 SILDLCSSWVSHFPPG--YKQDRIVGMGMNEEELKRNP--------VLTEYVVQDLNLNPKLPF-EDNSFDVITNVVSVD 219 (309)
Q Consensus 151 ~ILDiGcG~g~~~~~~--~~~~~v~giD~S~~~l~~a~--------~~i~~~~~D~~~~~~lp~-~~~sfDlVis~~vl~ 219 (309)
+|||+|||.|...... ....+++++|+++.+++.++ .++.++..|. .+... ..++||+|++..+++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDA---EELPPEADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcCh---hhhccccCCceEEEEEcccee
Confidence 5899999988543221 35679999999999887665 1378888888 44442 457899999999999
Q ss_pred c-cCCHHHHHHHHHhhcccCcEEEEE
Q 021661 220 Y-LTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 220 ~-l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
+ ..+...+++.+.+.|||||.++++
T Consensus 78 ~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 78 HLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 9 778899999999999999998876
No 103
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.10 E-value=3.5e-11 Score=95.08 Aligned_cols=94 Identities=21% Similarity=0.303 Sum_probs=70.5
Q ss_pred CCeEEEECCCcchhcc---CCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCC--CCCCceeEEEe
Q 021661 149 GVSILDLCSSWVSHFP---PGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLP--FEDNSFDVITN 214 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~---~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp--~~~~sfDlVis 214 (309)
|.+|||+|||+|.... ... ..+++|+|+++..++.++.+ ++++++|+ .... +++++||+|++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~---~~~~~~~~~~~~D~Iv~ 76 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDA---RDLPEPLPDGKFDLIVT 76 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHH---HHHHHTCTTT-EEEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECch---hhchhhccCceeEEEEE
Confidence 4589999999995432 222 57999999999999876652 68999998 5554 67789999999
Q ss_pred ccchhccC--------CHHHHHHHHHhhcccCcEEEEEec
Q 021661 215 VVSVDYLT--------KPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 215 ~~vl~~l~--------d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
+--..... ....+++++.++|||||.+++.++
T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 86554321 236889999999999999887765
No 104
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.10 E-value=1.7e-09 Score=98.40 Aligned_cols=96 Identities=18% Similarity=0.267 Sum_probs=69.8
Q ss_pred CCCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEec
Q 021661 147 TPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis~ 215 (309)
.++.+|||+|||+|.. +....+..+|+|+|+|+.+++.++++ +.++++|+ .. ++.+++||+|+++
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~---~~-~~~~~~fD~Iv~n 182 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDW---FE-PLPGGRFDLIVSN 182 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccc---cC-cCCCCceeEEEEC
Confidence 3467999999998853 33345678999999999999876653 67888887 22 2235789999986
Q ss_pred cch------h--------c------------cCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 216 VSV------D--------Y------------LTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 216 ~vl------~--------~------------l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
.-. + | +.....+++++.++|||||.++++..
T Consensus 183 pPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g 239 (275)
T PRK09328 183 PPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG 239 (275)
T ss_pred CCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 211 1 1 11236788999999999999998753
No 105
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.09 E-value=7e-10 Score=107.48 Aligned_cols=98 Identities=18% Similarity=0.331 Sum_probs=72.5
Q ss_pred CCCCeEEEECCCcchh---cc-CCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCC-CCCCceeEEE
Q 021661 147 TPGVSILDLCSSWVSH---FP-PGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLP-FEDNSFDVIT 213 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~---~~-~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp-~~~~sfDlVi 213 (309)
.++.+|||+|||+|.. +. ...+.++|+++|+|+.+++.++++ +++.++|+ ..++ +.+++||.|+
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da---~~l~~~~~~~fD~Vl 312 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADA---ERLTEYVQDTFDRIL 312 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch---hhhhhhhhccCCEEE
Confidence 4578999999998842 22 223567999999999999887653 57888998 6655 4457899999
Q ss_pred ec------cchhccC----------------CHHHHHHHHHhhcccCcEEEEEecC
Q 021661 214 NV------VSVDYLT----------------KPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 214 s~------~vl~~l~----------------d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+. .++..-+ ...++|.++.+.|||||.++.++..
T Consensus 313 ~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 313 VDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred ECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 62 2222212 1256799999999999999998875
No 106
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.09 E-value=1.4e-09 Score=105.95 Aligned_cols=156 Identities=19% Similarity=0.203 Sum_probs=91.6
Q ss_pred CCCCeEEEECCCcchhc---cCC-CCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCC--CCCCceeEE
Q 021661 147 TPGVSILDLCSSWVSHF---PPG-YKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLP--FEDNSFDVI 212 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~-~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp--~~~~sfDlV 212 (309)
.++.+|||+|||+|... ... .+.++|+++|+++.+++.++++ ++++++|+ ..++ ++ ++||+|
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~---~~~~~~~~-~~fD~V 324 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDA---RKVHEKFA-EKFDKI 324 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCc---ccccchhc-ccCCEE
Confidence 45789999999988532 222 2567999999999999876543 67889998 5543 23 679999
Q ss_pred Eecc------chhccCC----------------HHHHHHHHHhhcccCcEEEEEecCcc--hhHHHhhhhhcCC-CCchh
Q 021661 213 TNVV------SVDYLTK----------------PIEVFKEMCQVLKPGGLAIVSFSNRC--FWTKAISIWTSTG-DADHV 267 (309)
Q Consensus 213 is~~------vl~~l~d----------------~~~~l~~i~rvLkpGG~lii~~~~~~--~~~~~~~~w~~~~-~~~h~ 267 (309)
++.- ++.+-++ ...+|+++.++|||||.++.++.... -....+..+.... +..-+
T Consensus 325 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~ 404 (444)
T PRK14902 325 LVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFELV 404 (444)
T ss_pred EEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEEe
Confidence 9742 2222111 14689999999999999998765421 1122222222111 11111
Q ss_pred HhHHHHHHH-hCCCCCCceeeccCCCCCCCCcEEEEEEeCC
Q 021661 268 MIVGAYFHY-AGGYEPPQAVDISPNPGRSDPMYVVYSRKAS 307 (309)
Q Consensus 268 ~~~~~~f~~-~~Gf~~~~~~~~~~~~~~~~p~~~v~a~k~~ 307 (309)
......... ... .....+.+.|..++.|.+|+..-+|.+
T Consensus 405 ~~~~~~~~~~~~~-~~~~~~r~~P~~~~~dGfF~a~l~k~~ 444 (444)
T PRK14902 405 PLQHEKPDELVYE-VKDGYLQILPNDYGTDGFFIAKLRKKG 444 (444)
T ss_pred ccccccccccccc-ccCCeEEECCCCCCCCCeEEEEEEECC
Confidence 110000000 000 011234445555678999999999864
No 107
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.08 E-value=4.8e-10 Score=103.97 Aligned_cols=94 Identities=17% Similarity=0.259 Sum_probs=69.8
Q ss_pred CeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEecc-
Q 021661 150 VSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVV- 216 (309)
Q Consensus 150 ~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis~~- 216 (309)
.+|||+|||+|.. +....+..+|+|+|+|+.+++.|+++ ++++++|+. +.+ ++++||+|+++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~--~~l--~~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLF--AAL--PGRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchh--hhC--CCCCccEEEECCC
Confidence 6899999999854 33345678999999999999987653 678888972 223 356799999872
Q ss_pred -----ch-------hccC------------CHHHHHHHHHhhcccCcEEEEEecC
Q 021661 217 -----SV-------DYLT------------KPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 217 -----vl-------~~l~------------d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
.+ +|-+ ....+++++.++|||||.++++...
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~ 265 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN 265 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 11 1111 1257899999999999999998764
No 108
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.08 E-value=2.5e-10 Score=98.98 Aligned_cols=96 Identities=23% Similarity=0.224 Sum_probs=81.9
Q ss_pred CCeEEEECCCcchhccCCC--CCCeEEEEeCCHHHHhhCCCC------CcEEEecCCCCCCCCCCCCceeEEEeccchhc
Q 021661 149 GVSILDLCSSWVSHFPPGY--KQDRIVGMGMNEEELKRNPVL------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 220 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~~~--~~~~v~giD~S~~~l~~a~~~------i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~ 220 (309)
...++|||||.|....... .-.+++-+|.|..|++.++.- ....++|- +.|++.++++|+|+++..+||
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DE---E~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDE---EFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecch---hcccccccchhhhhhhhhhhh
Confidence 4589999999885443332 245899999999999987653 67889998 899999999999999999999
Q ss_pred cCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 221 LTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 221 l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
++|....+.++...|||+|.++-+.-.
T Consensus 150 ~NdLPg~m~~ck~~lKPDg~Fiasmlg 176 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKPDGLFIASMLG 176 (325)
T ss_pred hccCchHHHHHHHhcCCCccchhHHhc
Confidence 999999999999999999998876544
No 109
>PRK14968 putative methyltransferase; Provisional
Probab=99.07 E-value=4.1e-10 Score=96.26 Aligned_cols=95 Identities=22% Similarity=0.247 Sum_probs=69.1
Q ss_pred CCCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhhCCCC----------CcEEEecCCCCCCCCCCCCceeEEEecc
Q 021661 148 PGVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPKLPFEDNSFDVITNVV 216 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~a~~~----------i~~~~~D~~~~~~lp~~~~sfDlVis~~ 216 (309)
++.+|||+|||.|.... .+..+.+|+|+|+|++|++.++++ +.++++|+ .+ ++.+++||+|+++.
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~---~~-~~~~~~~d~vi~n~ 98 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDL---FE-PFRGDKFDVILFNP 98 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccc---cc-cccccCceEEEECC
Confidence 47799999999885432 222368999999999999877432 66788887 33 33455899999876
Q ss_pred chhcc---------------------CCHHHHHHHHHhhcccCcEEEEEec
Q 021661 217 SVDYL---------------------TKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 217 vl~~l---------------------~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
.+.+. .....+++++.++|||||.+++..+
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 44321 1145689999999999998877654
No 110
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.07 E-value=4.9e-10 Score=98.35 Aligned_cols=91 Identities=14% Similarity=0.053 Sum_probs=67.5
Q ss_pred CCCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
.++.+|||+|||+|..... +....+|+++|+++++++.++++ +++..+|. .+...+.++||+|++...
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDG---WKGWPAYAPFDRILVTAA 153 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCc---ccCCCcCCCcCEEEEccC
Confidence 4578999999999853221 11135899999999999877652 67888887 332223478999999887
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
++++ .+++.+.|+|||.+++.+.
T Consensus 154 ~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 154 APEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred chhh------hHHHHHhcCCCcEEEEEEc
Confidence 7655 3567899999999988765
No 111
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.06 E-value=1.6e-09 Score=98.39 Aligned_cols=156 Identities=17% Similarity=0.093 Sum_probs=92.2
Q ss_pred CCCCeEEEECCCcchhc---cC-CCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHF---PP-GYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~-~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.++.+|||+|||.|... .. ....+.|+++|+++.+++.++++ +.+++.|+ ..++...++||+|++
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~---~~~~~~~~~fD~Vl~ 146 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDG---RVFGAAVPKFDAILL 146 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCH---HHhhhhccCCCEEEE
Confidence 45789999999988432 22 23356999999999999876653 57788887 555544567999995
Q ss_pred c------cchhccC----------------CHHHHHHHHHhhcccCcEEEEEecCcc--hhHHHhhhhhcCCCCchhH-h
Q 021661 215 V------VSVDYLT----------------KPIEVFKEMCQVLKPGGLAIVSFSNRC--FWTKAISIWTSTGDADHVM-I 269 (309)
Q Consensus 215 ~------~vl~~l~----------------d~~~~l~~i~rvLkpGG~lii~~~~~~--~~~~~~~~w~~~~~~~h~~-~ 269 (309)
. .++.+-+ ...++|+++.+.|||||.++.++.... -....++.+.......... .
T Consensus 147 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~~~~~~~~~~ 226 (264)
T TIGR00446 147 DAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEKRPDVVEELP 226 (264)
T ss_pred cCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHhCCCcEEecc
Confidence 3 1222211 124699999999999999998876532 2233333333221110000 0
Q ss_pred HHH-HHHHhCCCC-CCceeeccCCCCCCCCcEEEEEEe
Q 021661 270 VGA-YFHYAGGYE-PPQAVDISPNPGRSDPMYVVYSRK 305 (309)
Q Consensus 270 ~~~-~f~~~~Gf~-~~~~~~~~~~~~~~~p~~~v~a~k 305 (309)
... ......+.. ....+.+.|..+..|.+|+..-+|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfF~a~l~k 264 (264)
T TIGR00446 227 KGDEFFGANKGKEEVKGALRVFPQIYDCEGFFVAKLRK 264 (264)
T ss_pred CCcccccccccccccCCeEEECCCCCCCCcEEEEEEEC
Confidence 000 001001111 122344555555689999888776
No 112
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.02 E-value=3.6e-10 Score=102.50 Aligned_cols=110 Identities=18% Similarity=0.295 Sum_probs=83.4
Q ss_pred CCCeEEEECCCcchhccCC--CCCCeEEEEeCCHHHHhhCCCC--------------CcEEEecCCCC---CCCCCCCCc
Q 021661 148 PGVSILDLCSSWVSHFPPG--YKQDRIVGMGMNEEELKRNPVL--------------TEYVVQDLNLN---PKLPFEDNS 208 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~~--~~~~~v~giD~S~~~l~~a~~~--------------i~~~~~D~~~~---~~lp~~~~s 208 (309)
++..+||+|||-|.-+..- ..-..++|+||++..+++|+++ +.|+.+|-... ..+++++.+
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~ 196 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR 196 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence 3779999999966444332 2345899999999999988763 57889987331 234455666
Q ss_pred eeEEEeccchhcc----CCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhh
Q 021661 209 FDVITNVVSVDYL----TKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISI 257 (309)
Q Consensus 209 fDlVis~~vl~~l----~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~ 257 (309)
||+|-|.+++|+- .....+|.++.+.|||||.+|-++|+...+.+.+..
T Consensus 197 fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~ 249 (389)
T KOG1975|consen 197 FDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRA 249 (389)
T ss_pred cceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHh
Confidence 9999999999985 235679999999999999999999987666555443
No 113
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.01 E-value=8.3e-09 Score=87.63 Aligned_cols=94 Identities=23% Similarity=0.183 Sum_probs=75.3
Q ss_pred CCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEec
Q 021661 147 TPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis~ 215 (309)
.++++++|||||+|+.. ....|.++|+++|-++++++..++| ++.+.+|+- +.|+-.+ +||.|+..
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap--~~L~~~~-~~daiFIG 109 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAP--EALPDLP-SPDAIFIG 109 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccch--HhhcCCC-CCCEEEEC
Confidence 67899999999999532 3557899999999999999876654 788888882 2333222 79999998
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
.. .+.+.+|+.+...|||||.+++....
T Consensus 110 Gg----~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 110 GG----GNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred CC----CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 87 36789999999999999999997664
No 114
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.00 E-value=3.1e-09 Score=95.80 Aligned_cols=153 Identities=16% Similarity=0.181 Sum_probs=93.9
Q ss_pred cchhhHHHhhcchhhhhhhCCCCCCCCCCChhHHhhccCCCCcccccCCcccccCCHHHHHHHHHHHHhhCCCCCCCCCe
Q 021661 72 ANSLIASARQRGAVEQVLKDVQWPEQFPFKEEDFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVS 151 (309)
Q Consensus 72 ~r~~~~~~~~~~~v~~v~~~~~w~~~~p~~~e~f~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~ 151 (309)
++.+..+..+..|+.++.....|.. .++....+. |. |+.. ...+.+.....++. ...+.+
T Consensus 30 ~~~~~~rr~~~~Pl~yi~g~~~f~g---------~~~~v~~~v-f~--pr~~-------Te~Lv~~~l~~~~~-~~~~~~ 89 (251)
T TIGR03704 30 LAAMVDRRVAGLPLEHVLGWAEFCG---------LRIAVDPGV-FV--PRRR-------TEFLVDEAAALARP-RSGTLV 89 (251)
T ss_pred HHHHHHHHHcCCCHHHhcccCeEcC---------eEEEECCCC-cC--CCcc-------HHHHHHHHHHhhcc-cCCCCE
Confidence 5556666667789999998876331 112222222 11 2211 12223333333321 122458
Q ss_pred EEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCCC-----CcEEEecCCCCCCCCC-CCCceeEEEeccc-----
Q 021661 152 ILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPVL-----TEYVVQDLNLNPKLPF-EDNSFDVITNVVS----- 217 (309)
Q Consensus 152 ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~~-----i~~~~~D~~~~~~lp~-~~~sfDlVis~~v----- 217 (309)
|||+|||+|... ....++.+|+|+|+|+.+++.++++ .+++++|+. ..++. ..++||+|+++--
T Consensus 90 vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~--~~l~~~~~~~fDlVv~NPPy~~~~ 167 (251)
T TIGR03704 90 VVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLY--DALPTALRGRVDILAANAPYVPTD 167 (251)
T ss_pred EEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeech--hhcchhcCCCEeEEEECCCCCCch
Confidence 999999998433 3335567999999999999988765 578999982 22321 1357999998731
Q ss_pred -hhccC----------------C----HHHHHHHHHhhcccCcEEEEEec
Q 021661 218 -VDYLT----------------K----PIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 218 -l~~l~----------------d----~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
+..++ | ...+++.+.++|||||.++++..
T Consensus 168 ~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 168 AIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred hhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 11110 1 34788888899999999998865
No 115
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=3.4e-09 Score=96.36 Aligned_cols=105 Identities=22% Similarity=0.288 Sum_probs=79.1
Q ss_pred HHHHHhhCCCCCCCCCeEEEECCCcc---hhccCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCC
Q 021661 135 TKYYSEVFPPSNTPGVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLP 203 (309)
Q Consensus 135 ~~~~~~~l~~~~~~~~~ILDiGcG~g---~~~~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp 203 (309)
.+++.+.++. ..+.+|||+|||+| ..+....|..+++.+|+|..+++.++++ ..++..|. ..+
T Consensus 147 S~lLl~~l~~--~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~----~~~ 220 (300)
T COG2813 147 SRLLLETLPP--DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNL----YEP 220 (300)
T ss_pred HHHHHHhCCc--cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecc----ccc
Confidence 4566677765 33459999999987 4556667888999999999999998876 24566666 233
Q ss_pred CCCCceeEEEeccchhccCCH-----HHHHHHHHhhcccCcEEEEEec
Q 021661 204 FEDNSFDVITNVVSVDYLTKP-----IEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 204 ~~~~sfDlVis~~vl~~l~d~-----~~~l~~i~rvLkpGG~lii~~~ 246 (309)
..+ +||+|+|+--+|--.+. .+++.+..+.|++||.|.|-..
T Consensus 221 v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 221 VEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred ccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 344 89999999888754332 4899999999999997766433
No 116
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.99 E-value=1.9e-09 Score=106.37 Aligned_cols=94 Identities=15% Similarity=0.197 Sum_probs=68.4
Q ss_pred CCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEecc
Q 021661 149 GVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVV 216 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis~~ 216 (309)
+.+|||+|||+|... ....+..+|+|+|+|+.+++.|+++ +.++++|+ .. ++++++||+|+++-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~---~~-~~~~~~fDlIvsNP 214 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNW---FE-NIEKQKFDFIVSNP 214 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecch---hh-hCcCCCccEEEECC
Confidence 468999999999533 3345778999999999999987764 56788886 22 23356899999952
Q ss_pred --------------chhccC------------CHHHHHHHHHhhcccCcEEEEEec
Q 021661 217 --------------SVDYLT------------KPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 217 --------------vl~~l~------------d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
++.|-+ ....+++++.++|||||.++++..
T Consensus 215 PYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig 270 (506)
T PRK01544 215 PYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG 270 (506)
T ss_pred CCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 111111 124678889999999999998854
No 117
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.98 E-value=6.7e-10 Score=93.24 Aligned_cols=116 Identities=14% Similarity=0.259 Sum_probs=80.9
Q ss_pred HHHHHHHHHhhCCC--CCCCCCeEEEECCCcchhccCCC---CCCeEEEEeCCHHHHhhCCCC---------CcEEEecC
Q 021661 131 IAALTKYYSEVFPP--SNTPGVSILDLCSSWVSHFPPGY---KQDRIVGMGMNEEELKRNPVL---------TEYVVQDL 196 (309)
Q Consensus 131 ~~~l~~~~~~~l~~--~~~~~~~ILDiGcG~g~~~~~~~---~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~ 196 (309)
..++.+++...... ......+|||+|||.|..+.... -....+|+|.|+.+++.|+.. ++|.|.|+
T Consensus 48 e~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI 127 (227)
T KOG1271|consen 48 EERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDI 127 (227)
T ss_pred HHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeec
Confidence 34555555544431 01223499999999997654332 234699999999999876541 89999999
Q ss_pred CCCCCCCCCCCceeEEEeccchhccC--------CHHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 197 NLNPKLPFEDNSFDVITNVVSVDYLT--------KPIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 197 ~~~~~lp~~~~sfDlVis~~vl~~l~--------d~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
..-.+..++||+|.=-..+..+. .+...+..+.++|+|||+++|+..|..
T Consensus 128 ---~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T 185 (227)
T KOG1271|consen 128 ---TDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFT 185 (227)
T ss_pred ---cCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCcc
Confidence 44456678899998655554441 234678889999999999999877754
No 118
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.93 E-value=1.3e-09 Score=93.98 Aligned_cols=85 Identities=20% Similarity=0.263 Sum_probs=56.6
Q ss_pred CCeEEEECCCcchhccCCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCCCCCceeEEEeccchhccCCHHHHH
Q 021661 149 GVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVF 228 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~~~~l 228 (309)
...|-|+|||-+...........|...|+-+. +-....+|+ .++|+++++.|+++++.+|.-. |...++
T Consensus 73 ~~viaD~GCGdA~la~~~~~~~~V~SfDLva~-------n~~Vtacdi---a~vPL~~~svDv~VfcLSLMGT-n~~~fi 141 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPNKHKVHSFDLVAP-------NPRVTACDI---ANVPLEDESVDVAVFCLSLMGT-NWPDFI 141 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S---EEEEESS-S-------STTEEES-T---TS-S--TT-EEEEEEES---SS--HHHHH
T ss_pred CEEEEECCCchHHHHHhcccCceEEEeeccCC-------CCCEEEecC---ccCcCCCCceeEEEEEhhhhCC-CcHHHH
Confidence 67999999998865544444568999998653 356889999 8999999999999999887754 899999
Q ss_pred HHHHhhcccCcEEEEE
Q 021661 229 KEMCQVLKPGGLAIVS 244 (309)
Q Consensus 229 ~~i~rvLkpGG~lii~ 244 (309)
+|+.|+|||||.|.|.
T Consensus 142 ~EA~RvLK~~G~L~IA 157 (219)
T PF05148_consen 142 REANRVLKPGGILKIA 157 (219)
T ss_dssp HHHHHHEEEEEEEEEE
T ss_pred HHHHheeccCcEEEEE
Confidence 9999999999987664
No 119
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.91 E-value=9.6e-10 Score=95.34 Aligned_cols=96 Identities=18% Similarity=0.197 Sum_probs=64.5
Q ss_pred CCCeEEEECCCcch-------hccC----CCC-CCeEEEEeCCHHHHhhCCCC---------------------------
Q 021661 148 PGVSILDLCSSWVS-------HFPP----GYK-QDRIVGMGMNEEELKRNPVL--------------------------- 188 (309)
Q Consensus 148 ~~~~ILDiGcG~g~-------~~~~----~~~-~~~v~giD~S~~~l~~a~~~--------------------------- 188 (309)
+..+|+.+||++|. .+.. ..+ ..+|+|+|+|+.+|+.|++-
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 46799999999882 1111 111 35999999999999987651
Q ss_pred ---------CcEEEecCCCCCCCCCCCCceeEEEeccchhccCCH--HHHHHHHHhhcccCcEEEEEec
Q 021661 189 ---------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP--IEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 189 ---------i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~--~~~l~~i~rvLkpGG~lii~~~ 246 (309)
+.|.+.|+ .+.+...+.||+|+|-+||-+++.. .++++.+++.|+|||+|++.-.
T Consensus 111 ~v~~~lr~~V~F~~~NL---~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNL---LDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--T---T-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eEChHHcCceEEEeccc---CCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 68899998 5533456789999999999999654 6899999999999999999743
No 120
>PHA03411 putative methyltransferase; Provisional
Probab=98.91 E-value=3.3e-09 Score=95.83 Aligned_cols=97 Identities=22% Similarity=0.291 Sum_probs=73.2
Q ss_pred CCeEEEECCCcchhcc---CCCCCCeEEEEeCCHHHHhhCCCC---CcEEEecCCCCCCCCCCCCceeEEEeccchhccC
Q 021661 149 GVSILDLCSSWVSHFP---PGYKQDRIVGMGMNEEELKRNPVL---TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT 222 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~---~~~~~~~v~giD~S~~~l~~a~~~---i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~ 222 (309)
..+|||+|||+|.... ...+..+|+|+|+|+.|++.++++ ++++++|+ ..+.. +++||+|+++..+.+++
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~---~e~~~-~~kFDlIIsNPPF~~l~ 140 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDV---FEFES-NEKFDVVISNPPFGKIN 140 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECch---hhhcc-cCCCcEEEEcCCccccC
Confidence 5799999999995432 223357999999999999988764 78999999 55543 46799999988777752
Q ss_pred C--------------------HHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 223 K--------------------PIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 223 d--------------------~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
. ..++++....+|+|+|.+.+-.....
T Consensus 141 ~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~ 187 (279)
T PHA03411 141 TTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP 187 (279)
T ss_pred chhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc
Confidence 1 24677888899999997766655433
No 121
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.90 E-value=4.2e-09 Score=98.05 Aligned_cols=90 Identities=20% Similarity=0.145 Sum_probs=66.5
Q ss_pred CCCCeEEEECCCcchhc---cCCCC-CCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHF---PPGYK-QDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~~-~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.++.+|||||||+|... ....+ .+.|+++|++++|++.|++ ++.++++|+ ...+...++||+|++
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~---~~~~~~~~~fD~Ii~ 155 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDG---YYGVPEFAPYDVIFV 155 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCh---hhcccccCCccEEEE
Confidence 45789999999998533 22222 3579999999999987765 367888887 554444567999999
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEEEe
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~ 245 (309)
...+.+++ ..+.+.|+|||.+++..
T Consensus 156 ~~g~~~ip------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 156 TVGVDEVP------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred CCchHHhH------HHHHHhcCCCCEEEEEe
Confidence 87766543 34678999999887753
No 122
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.90 E-value=6.9e-09 Score=91.70 Aligned_cols=95 Identities=16% Similarity=0.050 Sum_probs=74.0
Q ss_pred CCCeEEEECCCcch-hccCCCCCCeEEEEeCCHHHHhhCCC--------------------CCcEEEecCCCCCCCCC--
Q 021661 148 PGVSILDLCSSWVS-HFPPGYKQDRIVGMGMNEEELKRNPV--------------------LTEYVVQDLNLNPKLPF-- 204 (309)
Q Consensus 148 ~~~~ILDiGcG~g~-~~~~~~~~~~v~giD~S~~~l~~a~~--------------------~i~~~~~D~~~~~~lp~-- 204 (309)
++.+||+.|||.|. ...++..+.+|+|+|+|+..++.+.+ .++++++|+ -+++.
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~---f~l~~~~ 119 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADI---FNLPKIA 119 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccC---cCCCccc
Confidence 46899999999884 33344457799999999999987421 378999999 56642
Q ss_pred -CCCceeEEEeccchhccCC--HHHHHHHHHhhcccCcEE-EEEe
Q 021661 205 -EDNSFDVITNVVSVDYLTK--PIEVFKEMCQVLKPGGLA-IVSF 245 (309)
Q Consensus 205 -~~~sfDlVis~~vl~~l~d--~~~~l~~i~rvLkpGG~l-ii~~ 245 (309)
..+.||+|+=..++++++. ..+..+.+.++|+|||.+ ++.+
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 1257999999999999963 468999999999999954 4443
No 123
>PRK00811 spermidine synthase; Provisional
Probab=98.88 E-value=4.8e-09 Score=96.25 Aligned_cols=98 Identities=16% Similarity=0.111 Sum_probs=70.1
Q ss_pred CCCeEEEECCCcchhcc--CCC-CCCeEEEEeCCHHHHhhCCCC-------------CcEEEecCCCCCCCCCCCCceeE
Q 021661 148 PGVSILDLCSSWVSHFP--PGY-KQDRIVGMGMNEEELKRNPVL-------------TEYVVQDLNLNPKLPFEDNSFDV 211 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~--~~~-~~~~v~giD~S~~~l~~a~~~-------------i~~~~~D~~~~~~lp~~~~sfDl 211 (309)
.+.+||+||||.|.... ... ...+|+++|+++++++.+++. ++++.+|+. .-++..+++||+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~--~~l~~~~~~yDv 153 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGI--KFVAETENSFDV 153 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchH--HHHhhCCCcccE
Confidence 36799999999885542 223 346899999999999987652 567888872 123334578999
Q ss_pred EEeccchhccCC----HHHHHHHHHhhcccCcEEEEEecC
Q 021661 212 ITNVVSVDYLTK----PIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 212 Vis~~vl~~l~d----~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
|++...-.+.+. ..++++.+.++|+|||.+++...+
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~ 193 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGS 193 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 998643222211 267899999999999999886544
No 124
>PRK04457 spermidine synthase; Provisional
Probab=98.88 E-value=2.8e-09 Score=96.73 Aligned_cols=96 Identities=17% Similarity=0.078 Sum_probs=70.4
Q ss_pred CCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEec
Q 021661 148 PGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNV 215 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis~ 215 (309)
++.+|||||||+|... ....+..+|+++|+++++++.|++. ++++.+|+. +.++...++||+|++.
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~--~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGA--EYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHH--HHHHhCCCCCCEEEEe
Confidence 3679999999988543 3456788999999999999987642 677888872 1223234679999975
Q ss_pred cchhc--cC---CHHHHHHHHHhhcccCcEEEEEec
Q 021661 216 VSVDY--LT---KPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 216 ~vl~~--l~---d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
. ++. .+ ...++++++.++|+|||.+++.+.
T Consensus 144 ~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 144 G-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred C-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 3 221 11 136999999999999999988643
No 125
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.87 E-value=3.3e-09 Score=97.39 Aligned_cols=99 Identities=18% Similarity=0.283 Sum_probs=67.6
Q ss_pred HHHHHHhhCCCCCCCCCeEEEECCCcchhc--cCCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCC
Q 021661 134 LTKYYSEVFPPSNTPGVSILDLCSSWVSHF--PPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPF 204 (309)
Q Consensus 134 l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~--~~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~ 204 (309)
..+++.++.. ++.+|||+|||+|... +......+|+|+|+++.+++.|++| .++..... .+.
T Consensus 151 cl~~l~~~~~----~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~---~~~-- 221 (295)
T PF06325_consen 151 CLELLEKYVK----PGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLS---EDL-- 221 (295)
T ss_dssp HHHHHHHHSS----TTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCT---SCT--
T ss_pred HHHHHHHhcc----CCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEe---ccc--
Confidence 3455555544 3789999999999543 2223345899999999999988875 22322222 222
Q ss_pred CCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 205 EDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 205 ~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
..+.||+|+++-..+- ....+..+.++|||||.++++
T Consensus 222 ~~~~~dlvvANI~~~v---L~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 222 VEGKFDLVVANILADV---LLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp CCS-EEEEEEES-HHH---HHHHHHHCHHHEEEEEEEEEE
T ss_pred ccccCCEEEECCCHHH---HHHHHHHHHHhhCCCCEEEEc
Confidence 2478999999865442 357888899999999999998
No 126
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=4.7e-09 Score=95.83 Aligned_cols=90 Identities=22% Similarity=0.305 Sum_probs=64.4
Q ss_pred CCCeEEEECCCcchhc--cCCCCCCeEEEEeCCHHHHhhCCCC-----Cc----EEEecCCCCCCCCCCCCceeEEEecc
Q 021661 148 PGVSILDLCSSWVSHF--PPGYKQDRIVGMGMNEEELKRNPVL-----TE----YVVQDLNLNPKLPFEDNSFDVITNVV 216 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~--~~~~~~~~v~giD~S~~~l~~a~~~-----i~----~~~~D~~~~~~lp~~~~sfDlVis~~ 216 (309)
++.+|||+|||+|... .......+|+|+|+.+-+++.+++| ++ ....+. ... ...+.||+|++|-
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~---~~~-~~~~~~DvIVANI 237 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLL---LEV-PENGPFDVIVANI 237 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccc---hhh-cccCcccEEEehh
Confidence 4899999999999543 2223345799999999999988876 22 111111 111 2235899999986
Q ss_pred chhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 217 SVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 217 vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
.-+- ...+..++.+.|||||.++++
T Consensus 238 LA~v---l~~La~~~~~~lkpgg~lIlS 262 (300)
T COG2264 238 LAEV---LVELAPDIKRLLKPGGRLILS 262 (300)
T ss_pred hHHH---HHHHHHHHHHHcCCCceEEEE
Confidence 3221 358899999999999999998
No 127
>PRK01581 speE spermidine synthase; Validated
Probab=98.83 E-value=1.5e-08 Score=94.86 Aligned_cols=98 Identities=13% Similarity=0.047 Sum_probs=69.4
Q ss_pred CCeEEEECCCcchhccCC---CCCCeEEEEeCCHHHHhhCCC---------------CCcEEEecCCCCCCCCCCCCcee
Q 021661 149 GVSILDLCSSWVSHFPPG---YKQDRIVGMGMNEEELKRNPV---------------LTEYVVQDLNLNPKLPFEDNSFD 210 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~~---~~~~~v~giD~S~~~l~~a~~---------------~i~~~~~D~~~~~~lp~~~~sfD 210 (309)
+.+||+||||.|..+... .+..+|+++|++++|++.|++ +++++.+|+. .-++...++||
T Consensus 151 PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~--~fL~~~~~~YD 228 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAK--EFLSSPSSLYD 228 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHH--HHHHhcCCCcc
Confidence 679999999988544322 234699999999999998874 2667788872 22344456899
Q ss_pred EEEeccch--h-ccCC--HHHHHHHHHhhcccCcEEEEEecCc
Q 021661 211 VITNVVSV--D-YLTK--PIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 211 lVis~~vl--~-~l~d--~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
+|++...- . .... -.++++.+++.|+|||.+++...++
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp 271 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP 271 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh
Confidence 99987421 0 0111 1579999999999999988764433
No 128
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.82 E-value=9.5e-09 Score=91.45 Aligned_cols=94 Identities=20% Similarity=0.223 Sum_probs=73.0
Q ss_pred CCCeEEEECCCcchhccCC-CCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCCCCCceeEEEeccchhccCCHHH
Q 021661 148 PGVSILDLCSSWVSHFPPG-YKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIE 226 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~~-~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~~~ 226 (309)
...++||||+|-|...... .-..+|++.+.|+.|....+++ .|.+.|. .+..-.+.+||+|.|.++|+.-.+|..
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~k-g~~vl~~---~~w~~~~~~fDvIscLNvLDRc~~P~~ 169 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKK-GFTVLDI---DDWQQTDFKFDVISCLNVLDRCDRPLT 169 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhC-CCeEEeh---hhhhccCCceEEEeehhhhhccCCHHH
Confidence 4679999999977544333 3356899999999998876553 2233444 333334568999999999999999999
Q ss_pred HHHHHHhhcccCcEEEEEe
Q 021661 227 VFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 227 ~l~~i~rvLkpGG~lii~~ 245 (309)
.|++|++.|+|+|.+++.+
T Consensus 170 LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 170 LLRDIRRALKPNGRLILAV 188 (265)
T ss_pred HHHHHHHHhCCCCEEEEEE
Confidence 9999999999999888874
No 129
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.81 E-value=3.4e-08 Score=83.63 Aligned_cols=118 Identities=8% Similarity=0.072 Sum_probs=76.5
Q ss_pred CCCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCC------CCcEEEecCCCCCCCCCCCCceeEEEeccchh
Q 021661 147 TPGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 219 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~------~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~ 219 (309)
.++.+|||||||+|..... +....+|+++|+++.|++.+++ +++++++|+ .++++++.+||.|+++.-.+
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~---~~~~~~~~~~d~vi~n~Py~ 88 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDA---LKFDLPKLQPYKVVGNLPYN 88 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECch---hcCCccccCCCEEEECCCcc
Confidence 3467999999999954322 2225799999999999987654 377899999 77777777799999986544
Q ss_pred ccCCHHHHHHHHHhh--cccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHH
Q 021661 220 YLTKPIEVFKEMCQV--LKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYF 274 (309)
Q Consensus 220 ~l~d~~~~l~~i~rv--LkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f 274 (309)
+ ....+..+... +.++|.++++.. ..+.+..+-....+..+..+.+++
T Consensus 89 -~--~~~~i~~~l~~~~~~~~~~l~~q~e----~a~rl~~~~~~~~y~~lsv~~~~~ 138 (169)
T smart00650 89 -I--STPILFKLLEEPPAFRDAVLMVQKE----VARRLAAKPGSKDYGRLSVLLQPY 138 (169)
T ss_pred -c--HHHHHHHHHhcCCCcceEEEEEEHH----HhHHhcCCCCCCcccHHHHHHHHH
Confidence 2 12344444432 447788888732 122222222334556666666544
No 130
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=2.5e-08 Score=88.43 Aligned_cols=137 Identities=18% Similarity=0.222 Sum_probs=97.2
Q ss_pred CCCCCeEEEECCCcchhc---c-CCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEE
Q 021661 146 NTPGVSILDLCSSWVSHF---P-PGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVI 212 (309)
Q Consensus 146 ~~~~~~ILDiGcG~g~~~---~-~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlV 212 (309)
..++.+|||.|.|+|... + ...+.++|+..|+-+++.+.|++| +++..+|+ .+.-.++ .||+|
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv---~~~~~~~-~vDav 167 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDV---REGIDEE-DVDAV 167 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccc---ccccccc-ccCEE
Confidence 467999999999988532 2 245779999999999999999876 56677887 4444444 79999
Q ss_pred EeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCceeeccCCC
Q 021661 213 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNP 292 (309)
Q Consensus 213 is~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~~~~~ 292 (309)
+.- +++|.++++.+..+|||||.+++-.|+-.-..+.. +-+ +..||.++++.-+....
T Consensus 168 ~LD-----mp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~----------------~~l-~~~g~~~ie~~E~l~R~ 225 (256)
T COG2519 168 FLD-----LPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTV----------------EAL-RERGFVDIEAVETLVRR 225 (256)
T ss_pred EEc-----CCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHH----------------HHH-HhcCccchhhheeeehe
Confidence 874 68999999999999999999888666422211111 112 23477777766664432
Q ss_pred ----------CC---CCCcEEEEEEeCCC
Q 021661 293 ----------GR---SDPMYVVYSRKAST 308 (309)
Q Consensus 293 ----------~~---~~p~~~v~a~k~~~ 308 (309)
.+ .-.-|+|.+||.+.
T Consensus 226 ~~v~~~~~RP~~~~v~HTgyivf~R~~~~ 254 (256)
T COG2519 226 WEVRKEATRPETRMVGHTGYIVFARKLGG 254 (256)
T ss_pred eeecccccCcccccccceeEEEEEeeccC
Confidence 11 12449999999864
No 131
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.79 E-value=1.7e-08 Score=88.45 Aligned_cols=142 Identities=15% Similarity=0.216 Sum_probs=87.0
Q ss_pred CCCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCCCCcEEEe-----------------------------
Q 021661 147 TPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQ----------------------------- 194 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~i~~~~~----------------------------- 194 (309)
..+..+|||||-.|.. +...+....|.|+||.+..++.|++++++...
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 3478999999976643 34444455799999999999998875322111
Q ss_pred ---cCCCC-------------CCCCCCCCceeEEEeccchhcc--C----CHHHHHHHHHhhcccCcEEEEEecCcchhH
Q 021661 195 ---DLNLN-------------PKLPFEDNSFDVITNVVSVDYL--T----KPIEVFKEMCQVLKPGGLAIVSFSNRCFWT 252 (309)
Q Consensus 195 ---D~~~~-------------~~lp~~~~sfDlVis~~vl~~l--~----d~~~~l~~i~rvLkpGG~lii~~~~~~~~~ 252 (309)
|.-.. +-+......||+|+|..+--|+ + -...+|+.|++.|.|||+|+++-..+..+.
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWksY~ 216 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWKSYK 216 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchHHHH
Confidence 00000 1122344579999997765554 2 257899999999999999999955555555
Q ss_pred HHhhhhhc-CCCCch----hHhHHHHHH-HhCCCCCCceeec
Q 021661 253 KAISIWTS-TGDADH----VMIVGAYFH-YAGGYEPPQAVDI 288 (309)
Q Consensus 253 ~~~~~w~~-~~~~~h----~~~~~~~f~-~~~Gf~~~~~~~~ 288 (309)
+....-.. ...+.. ...++.++. ..-||+..+-..+
T Consensus 217 kaar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e~~~~ 258 (288)
T KOG2899|consen 217 KAARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVEDLGL 258 (288)
T ss_pred HHHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeeccccc
Confidence 44433211 112222 223344443 3367777665553
No 132
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.78 E-value=1.5e-08 Score=92.83 Aligned_cols=95 Identities=16% Similarity=0.227 Sum_probs=71.8
Q ss_pred CCeEEEECCCcch-------hccCC----CCCCeEEEEeCCHHHHhhCCCC-----------------------------
Q 021661 149 GVSILDLCSSWVS-------HFPPG----YKQDRIVGMGMNEEELKRNPVL----------------------------- 188 (309)
Q Consensus 149 ~~~ILDiGcG~g~-------~~~~~----~~~~~v~giD~S~~~l~~a~~~----------------------------- 188 (309)
..+|+..||++|. .+... ....+|+|+|+|+.+|+.|++-
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4799999999882 11111 1135899999999999876541
Q ss_pred ----------CcEEEecCCCCCCCCCC-CCceeEEEeccchhccCC--HHHHHHHHHhhcccCcEEEEEec
Q 021661 189 ----------TEYVVQDLNLNPKLPFE-DNSFDVITNVVSVDYLTK--PIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 189 ----------i~~~~~D~~~~~~lp~~-~~sfDlVis~~vl~~l~d--~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
+.|.+.|+ ...+++ .+.||+|+|-+++.|+.+ ..++++++++.|+|||+|++.-.
T Consensus 196 ~~v~~~lr~~V~F~~~NL---~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 196 VRVRQELANYVDFQQLNL---LAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred EEEChHHHccCEEEcccC---CCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence 56677777 343332 578999999999999954 57899999999999999988643
No 133
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.77 E-value=1.2e-08 Score=91.67 Aligned_cols=168 Identities=15% Similarity=0.191 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEECCCcchh-ccCCCC-CCeEEEEeCCHHHHhhCCC-----C--------------
Q 021661 130 AIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH-FPPGYK-QDRIVGMGMNEEELKRNPV-----L-------------- 188 (309)
Q Consensus 130 ~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~-~~~~~~-~~~v~giD~S~~~l~~a~~-----~-------------- 188 (309)
......+.+.+.+.....++.++||||||.... +..+.+ ..+|+..|.++.-++..++ .
T Consensus 38 ~~~~~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~l 117 (256)
T PF01234_consen 38 ILLFFLKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCEL 117 (256)
T ss_dssp HHHHHHHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhc
Confidence 344344445555554445678999999996543 333333 3489999999876652111 0
Q ss_pred ------------------CcEEEecCCCCCCCCC---CCCceeEEEeccchhccC-C---HHHHHHHHHhhcccCcEEEE
Q 021661 189 ------------------TEYVVQDLNLNPKLPF---EDNSFDVITNVVSVDYLT-K---PIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 189 ------------------i~~~~~D~~~~~~lp~---~~~sfDlVis~~vl~~l~-d---~~~~l~~i~rvLkpGG~lii 243 (309)
-..+..|+.....++. -+..||+|++.++|+... | ...+++++.++|||||.|++
T Consensus 118 Eg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil 197 (256)
T PF01234_consen 118 EGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLIL 197 (256)
T ss_dssp TTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred cCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 2467888842222221 123599999999999873 4 46899999999999998776
Q ss_pred Ee-cCcchhHHHhhhhhcCCCCch----hHhHHHHHHHhCCCCCCceeeccCCCCCCCCcEEEEEEe
Q 021661 244 SF-SNRCFWTKAISIWTSTGDADH----VMIVGAYFHYAGGYEPPQAVDISPNPGRSDPMYVVYSRK 305 (309)
Q Consensus 244 ~~-~~~~~~~~~~~~w~~~~~~~h----~~~~~~~f~~~~Gf~~~~~~~~~~~~~~~~p~~~v~a~k 305 (309)
.. .+...+. ........ ...+.+-+ +.+||...+... ....-+.+.++.++|||
T Consensus 198 ~~~l~~t~Y~------vG~~~F~~l~l~ee~v~~al-~~aG~~i~~~~~-~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 198 AGVLGSTYYM------VGGHKFPCLPLNEEFVREAL-EEAGFDIEDLEK-QSKVSDYEGMFFLVARK 256 (256)
T ss_dssp EEESS-SEEE------ETTEEEE---B-HHHHHHHH-HHTTEEEEEEEG--TTTB---EEEEEEEEE
T ss_pred EEEcCceeEE------ECCEecccccCCHHHHHHHH-HHcCCEEEeccc-ccCcCCCCcEEEEEEeC
Confidence 53 3322110 00011111 22334444 568998655552 22222456789999998
No 134
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.76 E-value=2.1e-08 Score=89.57 Aligned_cols=91 Identities=12% Similarity=0.161 Sum_probs=68.1
Q ss_pred CCeEEEECCCcchh---ccCC-CCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCC-----CCCCcee
Q 021661 149 GVSILDLCSSWVSH---FPPG-YKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLP-----FEDNSFD 210 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~~~-~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp-----~~~~sfD 210 (309)
+.+|||||||+|.. +... .+.++|+++|+++++++.|+++ ++++++|+. +.++ .+.++||
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~--~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDAL--SALDQLLNNDPKPEFD 146 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHH--HHHHHHHhCCCCCCCC
Confidence 67999999998842 2333 3467999999999999987764 678899982 2222 1246899
Q ss_pred EEEeccchhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 211 VITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 211 lVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
+|+...-- +.+...+..+.+.|||||.++++
T Consensus 147 ~VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 147 FAFVDADK---PNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred EEEECCCH---HHHHHHHHHHHHhcCCCeEEEEE
Confidence 99885321 34568899999999999998886
No 135
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.75 E-value=8.4e-09 Score=90.38 Aligned_cols=91 Identities=24% Similarity=0.306 Sum_probs=63.7
Q ss_pred CCCCeEEEECCCcchhc---c-CCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHF---P-PGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~-~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.++.+|||||||+|-.. . ...+.++|+++|+.+...+.|+++ +.++++|.. ..++ +...||.|++
T Consensus 71 ~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~--~g~~-~~apfD~I~v 147 (209)
T PF01135_consen 71 KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGS--EGWP-EEAPFDRIIV 147 (209)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GG--GTTG-GG-SEEEEEE
T ss_pred CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchh--hccc-cCCCcCEEEE
Confidence 56999999999988322 2 223456899999999999988764 789999983 2233 4567999999
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
......++ ..+.+.||+||.|++-+.
T Consensus 148 ~~a~~~ip------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 148 TAAVPEIP------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp SSBBSS--------HHHHHTEEEEEEEEEEES
T ss_pred eeccchHH------HHHHHhcCCCcEEEEEEc
Confidence 98877554 347777999999988655
No 136
>PRK03612 spermidine synthase; Provisional
Probab=98.75 E-value=1.7e-08 Score=100.16 Aligned_cols=98 Identities=16% Similarity=0.144 Sum_probs=71.5
Q ss_pred CCCeEEEECCCcchhcc--CCCCC-CeEEEEeCCHHHHhhCCC---------------CCcEEEecCCCCCC-CCCCCCc
Q 021661 148 PGVSILDLCSSWVSHFP--PGYKQ-DRIVGMGMNEEELKRNPV---------------LTEYVVQDLNLNPK-LPFEDNS 208 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~--~~~~~-~~v~giD~S~~~l~~a~~---------------~i~~~~~D~~~~~~-lp~~~~s 208 (309)
++.+|||||||.|.... ..++. .+|+++|+++++++.+++ +++++.+|+ .+ +...+++
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da---~~~l~~~~~~ 373 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDA---FNWLRKLAEK 373 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChH---HHHHHhCCCC
Confidence 36799999999885432 23444 699999999999998876 256777887 33 3333468
Q ss_pred eeEEEeccchhccCC-----HHHHHHHHHhhcccCcEEEEEecCc
Q 021661 209 FDVITNVVSVDYLTK-----PIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 209 fDlVis~~vl~~l~d-----~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
||+|++...-...+. .+++++.+.+.|||||.+++...++
T Consensus 374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~ 418 (521)
T PRK03612 374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSP 418 (521)
T ss_pred CCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCc
Confidence 999999854333222 2468999999999999999876543
No 137
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.75 E-value=2e-08 Score=91.55 Aligned_cols=98 Identities=12% Similarity=0.104 Sum_probs=67.3
Q ss_pred CCeEEEECCCcchhcc---CCCCCCeEEEEeCCHHHHhhCCCC------------CcEEEecCCCCCCCCCCCCceeEEE
Q 021661 149 GVSILDLCSSWVSHFP---PGYKQDRIVGMGMNEEELKRNPVL------------TEYVVQDLNLNPKLPFEDNSFDVIT 213 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~---~~~~~~~v~giD~S~~~l~~a~~~------------i~~~~~D~~~~~~lp~~~~sfDlVi 213 (309)
+.+||+||||.|.... ...+..+|+++|+++++++.+++. ++++.+|+. ..+....++||+|+
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~--~~l~~~~~~yDvIi 150 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGF--KFLADTENTFDVII 150 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchH--HHHHhCCCCccEEE
Confidence 5699999999885432 222356899999999999877653 445555651 11222246899999
Q ss_pred eccchhccC--C--HHHHHHHHHhhcccCcEEEEEecCc
Q 021661 214 NVVSVDYLT--K--PIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 214 s~~vl~~l~--d--~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
+......-+ + ..++++.+.++|+|||.+++...++
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~ 189 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESP 189 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCc
Confidence 865422111 2 3688999999999999998875443
No 138
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.74 E-value=5.4e-08 Score=86.07 Aligned_cols=85 Identities=22% Similarity=0.327 Sum_probs=69.4
Q ss_pred CCeEEEECCCcchhccCCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCCCCCceeEEEeccchhccCCHHHHH
Q 021661 149 GVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVF 228 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~~~~l 228 (309)
...|-|+|||-+..... ....|+..|+-+. +-+++.+|+ .++|+++++.|+++++.+|.- .|...++
T Consensus 181 ~~vIaD~GCGEakiA~~--~~~kV~SfDL~a~-------~~~V~~cDm---~~vPl~d~svDvaV~CLSLMg-tn~~df~ 247 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIASS--ERHKVHSFDLVAV-------NERVIACDM---RNVPLEDESVDVAVFCLSLMG-TNLADFI 247 (325)
T ss_pred ceEEEecccchhhhhhc--cccceeeeeeecC-------CCceeeccc---cCCcCccCcccEEEeeHhhhc-ccHHHHH
Confidence 67999999997755442 2457888887532 467889999 899999999999999887763 5899999
Q ss_pred HHHHhhcccCcEEEEEec
Q 021661 229 KEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 229 ~~i~rvLkpGG~lii~~~ 246 (309)
+|++|+|||||.+.|.-.
T Consensus 248 kEa~RiLk~gG~l~IAEv 265 (325)
T KOG3045|consen 248 KEANRILKPGGLLYIAEV 265 (325)
T ss_pred HHHHHHhccCceEEEEeh
Confidence 999999999999877633
No 139
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.72 E-value=8.4e-08 Score=85.53 Aligned_cols=98 Identities=16% Similarity=0.281 Sum_probs=70.6
Q ss_pred CCeEEEECCCcch---hccCCCCCCeEEEEeCCHHHHhhCCCC---------CcEE----EecCCCCCCCCCCCCceeEE
Q 021661 149 GVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKRNPVL---------TEYV----VQDLNLNPKLPFEDNSFDVI 212 (309)
Q Consensus 149 ~~~ILDiGcG~g~---~~~~~~~~~~v~giD~S~~~l~~a~~~---------i~~~----~~D~~~~~~lp~~~~sfDlV 212 (309)
+..|||+|||+|. .+....+.+.|+++|.|+.++..|.+| +..+ +.|.. ...+..++++|++
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~--~~~~l~~~~~dll 226 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDAS--DEHPLLEGKIDLL 226 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccc--cccccccCceeEE
Confidence 5689999999984 345556789999999999999988876 3333 44443 2334567899999
Q ss_pred Eeccc-hhc-------------------------cCCHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 213 TNVVS-VDY-------------------------LTKPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 213 is~~v-l~~-------------------------l~d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
+|+-- +.+ ......++.-+.|.|+|||.+.+++...
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~ 288 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER 288 (328)
T ss_pred ecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc
Confidence 99831 111 1112467778899999999999998743
No 140
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=2.2e-08 Score=91.61 Aligned_cols=91 Identities=22% Similarity=0.270 Sum_probs=66.2
Q ss_pred eEEEECCCcch---hccCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEecc---
Q 021661 151 SILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVV--- 216 (309)
Q Consensus 151 ~ILDiGcG~g~---~~~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis~~--- 216 (309)
+|||+|||+|. .+....+..+|+|+|+|+.+++.|++| +.+++.|+. +.++ ++||+|++|-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf--~~~~---~~fDlIVsNPPYi 187 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLF--EPLR---GKFDLIVSNPPYI 187 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecc--cccC---CceeEEEeCCCCC
Confidence 79999999984 345556778999999999999988775 245555652 3332 3899999872
Q ss_pred --chhcc------CC--------------HHHHHHHHHhhcccCcEEEEEec
Q 021661 217 --SVDYL------TK--------------PIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 217 --vl~~l------~d--------------~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
-..+. .+ ...++.++.+.|+|||.++++..
T Consensus 188 p~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 188 PAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred CCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 10111 11 25788999999999999999855
No 141
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=2.9e-08 Score=86.04 Aligned_cols=91 Identities=19% Similarity=0.231 Sum_probs=69.8
Q ss_pred CCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
.++.+|||||||+|-.. ..+.-..+|+.+|..+...+.|+++ +.+.++|.. ..+| +...||.|+...+
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~--~G~~-~~aPyD~I~Vtaa 147 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGS--KGWP-EEAPYDRIIVTAA 147 (209)
T ss_pred CCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcc--cCCC-CCCCcCEEEEeec
Confidence 66899999999998432 1122234999999999998888763 788999983 3333 3478999999998
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
...+++ .+.+.|||||.+++-..
T Consensus 148 a~~vP~------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 148 APEVPE------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred cCCCCH------HHHHhcccCCEEEEEEc
Confidence 887765 47778999999888655
No 142
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.69 E-value=2.2e-08 Score=102.61 Aligned_cols=96 Identities=19% Similarity=0.172 Sum_probs=69.0
Q ss_pred CCeEEEECCCcchhccCC-CCC-CeEEEEeCCHHHHhhCCCC----------CcEEEecCCCCCCCCCCCCceeEEEecc
Q 021661 149 GVSILDLCSSWVSHFPPG-YKQ-DRIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPKLPFEDNSFDVITNVV 216 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~~-~~~-~~v~giD~S~~~l~~a~~~----------i~~~~~D~~~~~~lp~~~~sfDlVis~~ 216 (309)
+.+|||+|||+|.....+ ..+ .+|+++|+|+.+++.+++| ++++++|+. +.+.-..++||+|++.-
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~--~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCL--AWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHH--HHHHHcCCCcCEEEECC
Confidence 789999999998543222 223 4799999999999987764 578889872 11211146899999852
Q ss_pred -----------chhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 217 -----------SVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 217 -----------vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
+.....+...++..+.++|+|||.++++..
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 122234567889999999999999988754
No 143
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.69 E-value=4.6e-08 Score=87.85 Aligned_cols=92 Identities=25% Similarity=0.310 Sum_probs=79.8
Q ss_pred CCeEEEECCCcchhccCCCCCCeEEEEeCCHHHHhhCCCC-C-cEEEecCCCCCCCCCCCCceeEEEeccchhccCC---
Q 021661 149 GVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKRNPVL-T-EYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK--- 223 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~~~~~~~v~giD~S~~~l~~a~~~-i-~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d--- 223 (309)
+..+||+|||.|..+... |...++|+|++...+..+++. . ....+|+ .++|+.+.+||.+++..++||+..
T Consensus 46 gsv~~d~gCGngky~~~~-p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~---l~~p~~~~s~d~~lsiavihhlsT~~R 121 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVN-PLCLIIGCDLCTGLLGGAKRSGGDNVCRADA---LKLPFREESFDAALSIAVIHHLSTRER 121 (293)
T ss_pred cceeeecccCCcccCcCC-CcceeeecchhhhhccccccCCCceeehhhh---hcCCCCCCccccchhhhhhhhhhhHHH
Confidence 789999999998765443 778899999999999998876 4 5889999 899999999999999999999963
Q ss_pred HHHHHHHHHhhcccCcEEEEE
Q 021661 224 PIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 224 ~~~~l~~i~rvLkpGG~lii~ 244 (309)
-..+++++.|+|||||...+.
T Consensus 122 R~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 122 RERALEELLRVLRPGGNALVY 142 (293)
T ss_pred HHHHHHHHHHHhcCCCceEEE
Confidence 468999999999999965544
No 144
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.69 E-value=2.4e-07 Score=80.17 Aligned_cols=155 Identities=17% Similarity=0.194 Sum_probs=99.0
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcch---hccCCCCCCeEEEEeCCHHHHhh-------CC-CC-CcEEEecCCCCC
Q 021661 133 ALTKYYSEVFPPSNTPGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-------NP-VL-TEYVVQDLNLNP 200 (309)
Q Consensus 133 ~l~~~~~~~l~~~~~~~~~ILDiGcG~g~---~~~~~~~~~~v~giD~S~~~l~~-------a~-~~-i~~~~~D~~~~~ 200 (309)
-+.+.+.++++. .+.+|||||||+|. ++....|.....-.|+.+..+.. +. .+ ..-+..|+.. .
T Consensus 13 pIl~vL~~~l~~---~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~-~ 88 (204)
T PF06080_consen 13 PILEVLKQYLPD---SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSA-P 88 (204)
T ss_pred HHHHHHHHHhCc---cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCC-C
Confidence 345666677764 12369999999995 45667788888899998877421 11 12 3345666632 1
Q ss_pred CCCC------CCCceeEEEeccchhccC--CHHHHHHHHHhhcccCcEEEEEecC------cchhHHHhhhhhcC----C
Q 021661 201 KLPF------EDNSFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFSN------RCFWTKAISIWTST----G 262 (309)
Q Consensus 201 ~lp~------~~~sfDlVis~~vl~~l~--d~~~~l~~i~rvLkpGG~lii~~~~------~~~~~~~~~~w~~~----~ 262 (309)
..+. ..++||.|+|.+++|-.+ .-+.+|+.+.++|+|||.|++--|- ...-...++.|.+. +
T Consensus 89 ~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~ 168 (204)
T PF06080_consen 89 PWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEW 168 (204)
T ss_pred CCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCc
Confidence 1222 356899999999998765 3478999999999999998885331 11223444555433 2
Q ss_pred CCchhHhHHHHHHHhCCCCCCceeeccCCC
Q 021661 263 DADHVMIVGAYFHYAGGYEPPQAVDISPNP 292 (309)
Q Consensus 263 ~~~h~~~~~~~f~~~~Gf~~~~~~~~~~~~ 292 (309)
....+.-+.. +..+.|++..+.+.-..+.
T Consensus 169 GiRD~e~v~~-lA~~~GL~l~~~~~MPANN 197 (204)
T PF06080_consen 169 GIRDIEDVEA-LAAAHGLELEEDIDMPANN 197 (204)
T ss_pred CccCHHHHHH-HHHHCCCccCcccccCCCC
Confidence 2333333333 3366899988888776654
No 145
>PHA03412 putative methyltransferase; Provisional
Probab=98.68 E-value=4.6e-08 Score=86.55 Aligned_cols=88 Identities=19% Similarity=0.248 Sum_probs=64.9
Q ss_pred CCeEEEECCCcchhccC------CCCCCeEEEEeCCHHHHhhCCCC---CcEEEecCCCCCCCCCCCCceeEEEeccchh
Q 021661 149 GVSILDLCSSWVSHFPP------GYKQDRIVGMGMNEEELKRNPVL---TEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 219 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~------~~~~~~v~giD~S~~~l~~a~~~---i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~ 219 (309)
+.+|||+|||+|..... ..+..+|+++|+++.+++.|+++ ++++.+|+ ...++ +++||+||++-=+.
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~---~~~~~-~~~FDlIIsNPPY~ 125 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADA---LTTEF-DTLFDMAISNPPFG 125 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcch---hcccc-cCCccEEEECCCCC
Confidence 67999999999854431 12356999999999999999876 68999998 55444 46899999984222
Q ss_pred cc--C----------CHHHHHHHHHhhcccCcE
Q 021661 220 YL--T----------KPIEVFKEMCQVLKPGGL 240 (309)
Q Consensus 220 ~l--~----------d~~~~l~~i~rvLkpGG~ 240 (309)
-+ . -...+++.+.+++++|+.
T Consensus 126 ~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 126 KIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 11 1 135688899997777775
No 146
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.67 E-value=8.6e-08 Score=85.69 Aligned_cols=90 Identities=17% Similarity=0.227 Sum_probs=69.0
Q ss_pred CCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCC--CCcEEEecCCCCCCCCCCCCceeEEEeccchhccC
Q 021661 148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPV--LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT 222 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~--~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~ 222 (309)
+..+|||||+|.|.. +...+|+.+++..|+ |..++.+++ +++++.+|+ . -+++. +|+|+..++||+.+
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~~~rv~~~~gd~---f-~~~P~--~D~~~l~~vLh~~~ 172 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKEADRVEFVPGDF---F-DPLPV--ADVYLLRHVLHDWS 172 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHHTTTEEEEES-T---T-TCCSS--ESEEEEESSGGGS-
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-HhhhhccccccccccccccH---H-hhhcc--ccceeeehhhhhcc
Confidence 456999999998843 456789999999999 777775543 599999999 3 34444 99999999999997
Q ss_pred CH--HHHHHHHHhhcccC--cEEEEE
Q 021661 223 KP--IEVFKEMCQVLKPG--GLAIVS 244 (309)
Q Consensus 223 d~--~~~l~~i~rvLkpG--G~lii~ 244 (309)
+. .++|+++++.|+|| |.|+|.
T Consensus 173 d~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 173 DEDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred hHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 64 58999999999999 966543
No 147
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.66 E-value=6.9e-08 Score=87.41 Aligned_cols=95 Identities=17% Similarity=0.203 Sum_probs=73.4
Q ss_pred CCeEEEECCCcch-------hccCCC-----CCCeEEEEeCCHHHHhhCCCC----------------------------
Q 021661 149 GVSILDLCSSWVS-------HFPPGY-----KQDRIVGMGMNEEELKRNPVL---------------------------- 188 (309)
Q Consensus 149 ~~~ILDiGcG~g~-------~~~~~~-----~~~~v~giD~S~~~l~~a~~~---------------------------- 188 (309)
..+|.-+||++|. .+.... ...+|+|+|+|..+|+.|++-
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 6799999999882 112222 246999999999999988651
Q ss_pred ---------CcEEEecCCCCCCCCCCCCceeEEEeccchhccCCH--HHHHHHHHhhcccCcEEEEEec
Q 021661 189 ---------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP--IEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 189 ---------i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~--~~~l~~i~rvLkpGG~lii~~~ 246 (309)
|.|.+.|+ ..-++..+.||+|+|-+|+-++..+ .++++.++..|+|||+|++.-+
T Consensus 177 ~v~~~ir~~V~F~~~NL---l~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 177 RVKEELRKMVRFRRHNL---LDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred EEChHHhcccEEeecCC---CCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 67777777 3333234569999999999999754 6899999999999999999644
No 148
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.62 E-value=7.4e-08 Score=83.87 Aligned_cols=137 Identities=17% Similarity=0.086 Sum_probs=82.3
Q ss_pred CCCeEEEECCCcchhcc--CCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 148 PGVSILDLCSSWVSHFP--PGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~--~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
...+.||.|+|.|+... +..-..+|..+|+++.+++.|++. .++++.-+ ++...+.++||+|.+..+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gL---Q~f~P~~~~YDlIW~QW~ 131 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGL---QDFTPEEGKYDLIWIQWC 131 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-G---GG----TT-EEEEEEES-
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCH---hhccCCCCcEeEEEehHh
Confidence 35799999999996542 223367999999999999988731 56777777 555445678999999999
Q ss_pred hhccCC--HHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCC---chhHhHHHHHHHhCCCCCCceeeccCCC
Q 021661 218 VDYLTK--PIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDA---DHVMIVGAYFHYAGGYEPPQAVDISPNP 292 (309)
Q Consensus 218 l~~l~d--~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~---~h~~~~~~~f~~~~Gf~~~~~~~~~~~~ 292 (309)
+.|++| ..++|+.+...|+|+|.++|--.....- ...+ +..+. .....+.+.|++ +|+..++......-|
T Consensus 132 lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~---~~~~-D~~DsSvTRs~~~~~~lF~~-AGl~~v~~~~Q~~fP 206 (218)
T PF05891_consen 132 LGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSG---FDEF-DEEDSSVTRSDEHFRELFKQ-AGLRLVKEEKQKGFP 206 (218)
T ss_dssp GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSS---EEEE-ETTTTEEEEEHHHHHHHHHH-CT-EEEEEEE-TT--
T ss_pred hccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCC---Cccc-CCccCeeecCHHHHHHHHHH-cCCEEEEeccccCCC
Confidence 999975 5799999999999999998863321100 0011 11111 113455666754 888866554433334
No 149
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.60 E-value=2.6e-08 Score=95.75 Aligned_cols=97 Identities=20% Similarity=0.211 Sum_probs=66.7
Q ss_pred CCCeEEEECCCcchhccCCCCCCeEEEE-----eCCHHHHhhCCCC-CcEEEecCCCCCCCCCCCCceeEEEeccchh-c
Q 021661 148 PGVSILDLCSSWVSHFPPGYKQDRIVGM-----GMNEEELKRNPVL-TEYVVQDLNLNPKLPFEDNSFDVITNVVSVD-Y 220 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~~~~~~~v~gi-----D~S~~~l~~a~~~-i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~-~ 220 (309)
.-..+||+|||+|++.....+. .|+.+ |..+.+++.|-++ +..+.+-+.. ..|||++++||+|.|+.++. |
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s-~rLPfp~~~fDmvHcsrc~i~W 194 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGS-QRLPFPSNAFDMVHCSRCLIPW 194 (506)
T ss_pred ceEEEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhhhhcCcchhhhhhcc-ccccCCccchhhhhcccccccc
Confidence 3468999999998776554322 23333 3334566666544 3333222211 68999999999999987554 4
Q ss_pred cCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 221 LTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 221 l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
..+....|-++.|+|+|||+++++-+
T Consensus 195 ~~~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 195 HPNDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred hhcccceeehhhhhhccCceEEecCC
Confidence 55556799999999999999999855
No 150
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.60 E-value=8.7e-08 Score=91.79 Aligned_cols=96 Identities=20% Similarity=0.159 Sum_probs=67.2
Q ss_pred CCeEEEECCCcchhccC-CC-CCCeEEEEeCCHHHHhhCCCC----------CcEEEecCCCCCCC-C---CCCCceeEE
Q 021661 149 GVSILDLCSSWVSHFPP-GY-KQDRIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPKL-P---FEDNSFDVI 212 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~-~~-~~~~v~giD~S~~~l~~a~~~----------i~~~~~D~~~~~~l-p---~~~~sfDlV 212 (309)
+.+|||+|||+|..... +. ...+|+++|+|+.+++.++++ ++++++|+ .+. + ...++||+|
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~---~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDV---FKLLRTYRDRGEKFDVI 297 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccH---HHHHHHHHhcCCCCCEE
Confidence 78999999999864322 22 344899999999999877653 46888888 332 1 134589999
Q ss_pred Eeccch---------hccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 213 TNVVSV---------DYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 213 is~~vl---------~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
++.--. ..+.+...++..+.++|||||.++....+
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 987311 11123556677889999999988765443
No 151
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.59 E-value=8e-08 Score=90.65 Aligned_cols=96 Identities=35% Similarity=0.533 Sum_probs=81.7
Q ss_pred CCCCCeEEEECCCcch--hccCCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 146 NTPGVSILDLCSSWVS--HFPPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 146 ~~~~~~ILDiGcG~g~--~~~~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
..++..++|+|||.+. .+........++|+|.++..+.++... ..++.+|+ -+.|++++.||.+-+
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~---~~~~fedn~fd~v~~ 184 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADF---GKMPFEDNTFDGVRF 184 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhh---hcCCCCccccCcEEE
Confidence 4557799999999763 344456678999999999888765542 56788888 889999999999999
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
..+.+|.+++..+++|++|++||||+.+..
T Consensus 185 ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 185 LEVVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred EeecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 999999999999999999999999998775
No 152
>PLN02366 spermidine synthase
Probab=98.58 E-value=2.6e-07 Score=85.65 Aligned_cols=98 Identities=12% Similarity=0.081 Sum_probs=68.2
Q ss_pred CCCeEEEECCCcchhcc--CCCC-CCeEEEEeCCHHHHhhCCC------------CCcEEEecCCCCCCCC-CCCCceeE
Q 021661 148 PGVSILDLCSSWVSHFP--PGYK-QDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPKLP-FEDNSFDV 211 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~--~~~~-~~~v~giD~S~~~l~~a~~------------~i~~~~~D~~~~~~lp-~~~~sfDl 211 (309)
.+.+||+||||.|.... ..++ ..+|+.+|+++.+++.+++ +++++.+|+. .-+. .++++||+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~--~~l~~~~~~~yDv 168 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGV--EFLKNAPEGTYDA 168 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHH--HHHhhccCCCCCE
Confidence 36899999999885432 2233 4689999999999987665 3677888862 1111 22567999
Q ss_pred EEeccchhccCC----HHHHHHHHHhhcccCcEEEEEecC
Q 021661 212 ITNVVSVDYLTK----PIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 212 Vis~~vl~~l~d----~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
|++...-.+.+. -.++++.+.++|+|||.+++...+
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s 208 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAES 208 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCC
Confidence 998643322221 257899999999999999875443
No 153
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.55 E-value=9.9e-08 Score=82.82 Aligned_cols=98 Identities=17% Similarity=0.225 Sum_probs=69.5
Q ss_pred CeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCC--------CCCcEEEecCCCCCC-CC--CCCCceeEEEec
Q 021661 150 VSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNP--------VLTEYVVQDLNLNPK-LP--FEDNSFDVITNV 215 (309)
Q Consensus 150 ~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~--------~~i~~~~~D~~~~~~-lp--~~~~sfDlVis~ 215 (309)
..+||||||.|.++ +...|...++|+|++...+..+. .|+.++++|+ .. ++ ++++++|.|+.+
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da---~~~l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDA---RELLRRLFPPGSVDRIYIN 95 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-C---TTHHHHHSTTTSEEEEEEE
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccH---HHHHhhcccCCchheEEEe
Confidence 38999999999654 45578999999999998876543 3589999998 44 32 456899999987
Q ss_pred cchhccCC--------HHHHHHHHHhhcccCcEEEEEecCcch
Q 021661 216 VSVDYLTK--------PIEVFKEMCQVLKPGGLAIVSFSNRCF 250 (309)
Q Consensus 216 ~vl~~l~d--------~~~~l~~i~rvLkpGG~lii~~~~~~~ 250 (309)
+-=-|... -..+++.+.++|+|||.+.+.+.....
T Consensus 96 FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y 138 (195)
T PF02390_consen 96 FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEY 138 (195)
T ss_dssp S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHH
T ss_pred CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHH
Confidence 64333321 158999999999999999887766443
No 154
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.55 E-value=9.9e-08 Score=84.21 Aligned_cols=96 Identities=20% Similarity=0.261 Sum_probs=69.9
Q ss_pred CCCCeEEEECCCcch-hccCCCCCCeEEEEeCCHHHHhhCCC--------------------CCcEEEecCCCCCCCCCC
Q 021661 147 TPGVSILDLCSSWVS-HFPPGYKQDRIVGMGMNEEELKRNPV--------------------LTEYVVQDLNLNPKLPFE 205 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~-~~~~~~~~~~v~giD~S~~~l~~a~~--------------------~i~~~~~D~~~~~~lp~~ 205 (309)
.++.+||..|||.|. ....+..+.+|+|+|+|+.+++.+.+ +++++++|+ -+++..
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDf---F~l~~~ 112 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDF---FELPPE 112 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-T---TTGGGS
T ss_pred CCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEccc---ccCChh
Confidence 346799999999883 23333447799999999999987511 157889999 565533
Q ss_pred C-CceeEEEeccchhccC--CHHHHHHHHHhhcccCcE-EEEEe
Q 021661 206 D-NSFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGL-AIVSF 245 (309)
Q Consensus 206 ~-~sfDlVis~~vl~~l~--d~~~~l~~i~rvLkpGG~-lii~~ 245 (309)
. ++||+|+=...|+.++ ...+..+.+.++|||||. |++++
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l 156 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITL 156 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 3 5799999888888774 457899999999999997 44443
No 155
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.52 E-value=2.3e-07 Score=90.46 Aligned_cols=110 Identities=20% Similarity=0.268 Sum_probs=73.5
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCC-C
Q 021661 131 IAALTKYYSEVFPPSNTPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLN-P 200 (309)
Q Consensus 131 ~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~-~ 200 (309)
.+.+.+.+.+.+.. .++.+|||+|||+|... ..+....+|+|+|+|+.|++.|+++ ++++++|+... .
T Consensus 282 ~e~l~~~vl~~l~~--~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~ 359 (443)
T PRK13168 282 NQKMVARALEWLDP--QPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHHHHHHhcC--CCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhh
Confidence 34455555555542 45789999999999543 3333357999999999999987753 78999998310 1
Q ss_pred CCCCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 201 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 201 ~lp~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
.+++.+++||+|++.---. ...+.++.+.+ ++|++.++++..
T Consensus 360 ~~~~~~~~fD~Vi~dPPr~---g~~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 360 DQPWALGGFDKVLLDPPRA---GAAEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred hhhhhcCCCCEEEECcCCc---ChHHHHHHHHh-cCCCeEEEEEeC
Confidence 1234456899999864221 12355655555 699999999864
No 156
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.52 E-value=3e-07 Score=80.01 Aligned_cols=97 Identities=10% Similarity=-0.098 Sum_probs=67.3
Q ss_pred CCeEEEECCCcchhcc--CCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEeccch
Q 021661 149 GVSILDLCSSWVSHFP--PGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVVSV 218 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~--~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis~~vl 218 (309)
+.+|||+|||+|.... ......+|+++|.++.+++.++++ ++++++|+. ..++...++||+|+++--.
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~--~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNAL--SFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHH--HHHhhcCCCceEEEECCCC
Confidence 6799999999985443 223346999999999998876653 678888872 2233234569999998653
Q ss_pred hccCCHHHHHHHHHh--hcccCcEEEEEecCc
Q 021661 219 DYLTKPIEVFKEMCQ--VLKPGGLAIVSFSNR 248 (309)
Q Consensus 219 ~~l~d~~~~l~~i~r--vLkpGG~lii~~~~~ 248 (309)
.. .-..++++.+.. +|+|+|+++++....
T Consensus 132 ~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 132 RK-GLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred CC-ChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 21 123455565554 489999999997653
No 157
>PLN02672 methionine S-methyltransferase
Probab=98.51 E-value=6.1e-07 Score=94.69 Aligned_cols=97 Identities=16% Similarity=0.199 Sum_probs=68.5
Q ss_pred CCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCC------------------------CCcEEEecCCCCCC
Q 021661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPV------------------------LTEYVVQDLNLNPK 201 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~------------------------~i~~~~~D~~~~~~ 201 (309)
+.+|||+|||+|.. +....+..+|+|+|+|+++++.|++ +++++++|+. ..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~--~~ 196 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLL--GY 196 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchh--hh
Confidence 56999999998843 3344566799999999999987632 3678889982 22
Q ss_pred CCCCCCceeEEEecc--------------chhc--------------c------CC----HHHHHHHHHhhcccCcEEEE
Q 021661 202 LPFEDNSFDVITNVV--------------SVDY--------------L------TK----PIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 202 lp~~~~sfDlVis~~--------------vl~~--------------l------~d----~~~~l~~i~rvLkpGG~lii 243 (309)
++-....||+|+++- +.+| + .| +.+++.++.++|||||.+++
T Consensus 197 ~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 197 CRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred ccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 211123699999871 1111 0 11 26788999999999999999
Q ss_pred EecC
Q 021661 244 SFSN 247 (309)
Q Consensus 244 ~~~~ 247 (309)
++..
T Consensus 277 EiG~ 280 (1082)
T PLN02672 277 NMGG 280 (1082)
T ss_pred EECc
Confidence 9764
No 158
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.50 E-value=9.2e-07 Score=76.88 Aligned_cols=91 Identities=20% Similarity=0.368 Sum_probs=70.2
Q ss_pred CCeEEEECCCcchhccCCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCC---CCCceeEEEeccchhccCCHH
Q 021661 149 GVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPF---EDNSFDVITNVVSVDYLTKPI 225 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~---~~~sfDlVis~~vl~~l~d~~ 225 (309)
..++|||||=.........+.-.|+.||+++. .-...+.|. .+.|+ +++.||+|.++.||.+++++.
T Consensus 52 ~lrlLEVGals~~N~~s~~~~fdvt~IDLns~-------~~~I~qqDF---m~rplp~~~~e~FdvIs~SLVLNfVP~p~ 121 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACSTSGWFDVTRIDLNSQ-------HPGILQQDF---MERPLPKNESEKFDVISLSLVLNFVPDPK 121 (219)
T ss_pred cceEEeecccCCCCcccccCceeeEEeecCCC-------CCCceeecc---ccCCCCCCcccceeEEEEEEEEeeCCCHH
Confidence 47999999964433333344457999999873 245667787 55554 467899999999999999885
Q ss_pred ---HHHHHHHhhcccCcE-----EEEEecCcc
Q 021661 226 ---EVFKEMCQVLKPGGL-----AIVSFSNRC 249 (309)
Q Consensus 226 ---~~l~~i~rvLkpGG~-----lii~~~~~~ 249 (309)
++++.+++.|+|+|. |+|-+|.++
T Consensus 122 ~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C 153 (219)
T PF11968_consen 122 QRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC 153 (219)
T ss_pred HHHHHHHHHHHHhCCCCccCcceEEEEeCchH
Confidence 799999999999999 888887654
No 159
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.50 E-value=1.1e-06 Score=79.48 Aligned_cols=99 Identities=15% Similarity=0.128 Sum_probs=77.1
Q ss_pred CCCCeEEEECCCcchhccC---CCCC--CeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEE
Q 021661 147 TPGVSILDLCSSWVSHFPP---GYKQ--DRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVI 212 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~---~~~~--~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlV 212 (309)
..+.+||||+||.|..+.. ..+. .+|.-.|.|+..++.+++. ++|.++|+....++.--+-..|++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 3468999999999976532 2333 5899999999998876542 599999996544443333457999
Q ss_pred EeccchhccCCH---HHHHHHHHhhcccCcEEEEEe
Q 021661 213 TNVVSVDYLTKP---IEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 213 is~~vl~~l~d~---~~~l~~i~rvLkpGG~lii~~ 245 (309)
+.+.+++.++|- ...|+.+.+++.|||.+|.+-
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 999999999873 568999999999999999874
No 160
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.47 E-value=3.2e-07 Score=80.57 Aligned_cols=92 Identities=20% Similarity=0.244 Sum_probs=69.7
Q ss_pred CCCeEEEECCCcch---hccCCCC-CCeEEEEeCCHHHHhhCCCC---------CcEEE-ecCCCCCCCC-CCCCceeEE
Q 021661 148 PGVSILDLCSSWVS---HFPPGYK-QDRIVGMGMNEEELKRNPVL---------TEYVV-QDLNLNPKLP-FEDNSFDVI 212 (309)
Q Consensus 148 ~~~~ILDiGcG~g~---~~~~~~~-~~~v~giD~S~~~l~~a~~~---------i~~~~-~D~~~~~~lp-~~~~sfDlV 212 (309)
.+.+|||||.+.|. .++...+ .++++.+|+++++.+.|+++ ++.+. +|+- +.+. ...++||+|
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal--~~l~~~~~~~fDli 136 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDAL--DVLSRLLDGSFDLV 136 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHH--HHHHhccCCCccEE
Confidence 37899999998773 3444445 77999999999999999875 55666 4651 2222 346899999
Q ss_pred EeccchhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 213 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 213 is~~vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
+.-..= .+..++++.+.++|+|||++++.
T Consensus 137 FIDadK---~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 137 FIDADK---ADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred EEeCCh---hhCHHHHHHHHHHhCCCcEEEEe
Confidence 975421 25679999999999999999987
No 161
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.47 E-value=5.4e-07 Score=78.76 Aligned_cols=128 Identities=19% Similarity=0.242 Sum_probs=87.2
Q ss_pred CCCCeEEEECCCcchhc-cCCCCCC-eEEEEeCCHHHHhhCCCC----------CcEEEecCCCCCCC--CCCCCceeEE
Q 021661 147 TPGVSILDLCSSWVSHF-PPGYKQD-RIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPKL--PFEDNSFDVI 212 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~-~~~~~~~-~v~giD~S~~~l~~a~~~----------i~~~~~D~~~~~~l--p~~~~sfDlV 212 (309)
+++.+|||.|.|.|-+. .....++ +|+.++-+++.|+.|+-| ++.+.+|+ .+. .++|++||+|
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~---~e~V~~~~D~sfDaI 209 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDA---YEVVKDFDDESFDAI 209 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccH---HHHHhcCCccccceE
Confidence 56899999999988543 3344566 999999999999988765 68899998 443 3778999999
Q ss_pred Eecc-chhccC--CHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCceee
Q 021661 213 TNVV-SVDYLT--KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVD 287 (309)
Q Consensus 213 is~~-vl~~l~--d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~ 287 (309)
+--- -+.+-. --+++-+|++|+|||||.++--+.++.. .+. ..+-..-+.+.+ +..||..++.+.
T Consensus 210 iHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~------ryr---G~d~~~gVa~RL-r~vGF~~v~~~~ 277 (287)
T COG2521 210 IHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGK------RYR---GLDLPKGVAERL-RRVGFEVVKKVR 277 (287)
T ss_pred eeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCc------ccc---cCChhHHHHHHH-HhcCceeeeeeh
Confidence 8431 111111 2368999999999999988776666542 111 112223344445 558998655443
No 162
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.46 E-value=1.2e-06 Score=69.72 Aligned_cols=93 Identities=30% Similarity=0.473 Sum_probs=69.5
Q ss_pred EEEECCCcch--hccCCCCC-CeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCC--CCCCC-CceeEEEeccc
Q 021661 152 ILDLCSSWVS--HFPPGYKQ-DRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPK--LPFED-NSFDVITNVVS 217 (309)
Q Consensus 152 ILDiGcG~g~--~~~~~~~~-~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~--lp~~~-~sfDlVis~~v 217 (309)
+||+|||.|. .+...... ..++|+|+++.++..++.. +.+...|. .. +++.. ..||++.+...
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d~~~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADA---LGGVLPFEDSASFDLVISLLV 128 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEecc---ccCCCCCCCCCceeEEeeeee
Confidence 9999999996 33333333 4899999999999874433 36788887 44 67776 48999944444
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
+++.. +...+.++.++|+|+|.+++.....
T Consensus 129 ~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 129 LHLLP-PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred hhcCC-HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 44444 8999999999999999988876653
No 163
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.46 E-value=5.1e-07 Score=84.15 Aligned_cols=109 Identities=11% Similarity=0.030 Sum_probs=69.1
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCC
Q 021661 131 IAALTKYYSEVFPPSNTPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPK 201 (309)
Q Consensus 131 ~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~ 201 (309)
...+.+.+.+.+.. .++.+|||+|||+|... ..+.++.+|+|+|+|+.|++.|+++ ++++++|+ ..
T Consensus 158 ~~~l~~~v~~~l~~--~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~---~~ 232 (315)
T PRK03522 158 AAQLYATARDWVRE--LPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDS---TQ 232 (315)
T ss_pred HHHHHHHHHHHHHh--cCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCH---HH
Confidence 34444444444432 23679999999998543 3334567999999999999987653 78999998 54
Q ss_pred CCC-CCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 202 LPF-EDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 202 lp~-~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+.. ..++||+|++.---. ...+.+.++...++|++.++++...
T Consensus 233 ~~~~~~~~~D~Vv~dPPr~---G~~~~~~~~l~~~~~~~ivyvsc~p 276 (315)
T PRK03522 233 FATAQGEVPDLVLVNPPRR---GIGKELCDYLSQMAPRFILYSSCNA 276 (315)
T ss_pred HHHhcCCCCeEEEECCCCC---CccHHHHHHHHHcCCCeEEEEECCc
Confidence 432 235799999873311 1112233333446787777777443
No 164
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.44 E-value=3e-07 Score=78.25 Aligned_cols=99 Identities=21% Similarity=0.187 Sum_probs=62.1
Q ss_pred CCCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCC-----------CCcEEEecCCCCCCC--C-CCCCce
Q 021661 147 TPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPV-----------LTEYVVQDLNLNPKL--P-FEDNSF 209 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~-----------~i~~~~~D~~~~~~l--p-~~~~sf 209 (309)
.++.+|||||||+|.. +.......+|+..|.++ .++..+. ++.+...|+.. .. + .+.++|
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~--~~~~~~~~~~~~ 120 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGD--ELDSDLLEPHSF 120 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS---HHHHHHS-SSB
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecC--cccccccccccC
Confidence 4578999999998832 22223577999999998 6553322 26677777731 12 1 245689
Q ss_pred eEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 210 DVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 210 DlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
|+|+++.++..-...+.+++-+.++|+|+|.+++....+
T Consensus 121 D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 121 DVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp SEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred CEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 999999999988788999999999999999887776644
No 165
>PLN02476 O-methyltransferase
Probab=98.43 E-value=5.8e-07 Score=81.84 Aligned_cols=91 Identities=11% Similarity=0.072 Sum_probs=68.5
Q ss_pred CCeEEEECCCcchh---ccCC-CCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCC-C----CCCcee
Q 021661 149 GVSILDLCSSWVSH---FPPG-YKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLP-F----EDNSFD 210 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~~~-~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp-~----~~~sfD 210 (309)
+.+|||||+++|.. +... .+.++|+++|.++++.+.|+++ ++++.+|+. +.|+ + ..++||
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~--e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAA--ESLKSMIQNGEGSSYD 196 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH--HHHHHHHhcccCCCCC
Confidence 67999999998832 2333 3467899999999999888763 788889883 2232 1 136899
Q ss_pred EEEeccchhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 211 VITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 211 lVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
+|+.-.-= .+....++.+.+.|+|||.+++.
T Consensus 197 ~VFIDa~K---~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 197 FAFVDADK---RMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred EEEECCCH---HHHHHHHHHHHHhcCCCcEEEEe
Confidence 99986431 35678899999999999999886
No 166
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.40 E-value=8e-07 Score=77.67 Aligned_cols=102 Identities=18% Similarity=0.236 Sum_probs=72.4
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcch---hccCC-CCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCC
Q 021661 133 ALTKYYSEVFPPSNTPGVSILDLCSSWVS---HFPPG-YKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLN 199 (309)
Q Consensus 133 ~l~~~~~~~l~~~~~~~~~ILDiGcG~g~---~~~~~-~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~ 199 (309)
++...+.+... ..+||||||++|. .+..+ .+.++|+.+|++++..+.|++ +++++.+|+.
T Consensus 35 ~lL~~l~~~~~-----~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~-- 107 (205)
T PF01596_consen 35 QLLQMLVRLTR-----PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDAL-- 107 (205)
T ss_dssp HHHHHHHHHHT------SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HH--
T ss_pred HHHHHHHHhcC-----CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccH--
Confidence 44445555444 6799999999883 23333 347899999999999988765 3789999982
Q ss_pred CCCC-----CCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 200 PKLP-----FEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 200 ~~lp-----~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
+-++ .+.++||+|+.-.-= .+....++.+.+.|+|||.+++.
T Consensus 108 ~~l~~l~~~~~~~~fD~VFiDa~K---~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 108 EVLPELANDGEEGQFDFVFIDADK---RNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp HHHHHHHHTTTTTSEEEEEEESTG---GGHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhHHHHHhccCCCceeEEEEcccc---cchhhHHHHHhhhccCCeEEEEc
Confidence 1122 113579999986532 35678889999999999999987
No 167
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.37 E-value=2.7e-06 Score=83.16 Aligned_cols=158 Identities=18% Similarity=0.108 Sum_probs=91.3
Q ss_pred CCCCeEEEECCCcch---hcc-CCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCC-CCCCceeEEE
Q 021661 147 TPGVSILDLCSSWVS---HFP-PGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLP-FEDNSFDVIT 213 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~---~~~-~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp-~~~~sfDlVi 213 (309)
.++.+|||+|+|.|. .+. .....+.|++.|+++.-++..+++ +.....|. ..+. ...+.||.|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~---~~~~~~~~~~fD~IL 188 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDG---RVFGAALPETFDAIL 188 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCch---hhhhhhchhhcCeEE
Confidence 568999999998662 222 233457999999999877765543 45666776 4442 2245799999
Q ss_pred ----ecc--chhccCC----------------HHHHHHHHHhhcccCcEEEEEecCc--chhHHHhhhhhcCC-CCchhH
Q 021661 214 ----NVV--SVDYLTK----------------PIEVFKEMCQVLKPGGLAIVSFSNR--CFWTKAISIWTSTG-DADHVM 268 (309)
Q Consensus 214 ----s~~--vl~~l~d----------------~~~~l~~i~rvLkpGG~lii~~~~~--~~~~~~~~~w~~~~-~~~h~~ 268 (309)
|+. ++..-++ ..++|.++.+.|||||.|+.++..- .-.+..+....... +...+.
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~~~~~~~~ 268 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYPDAVEFE 268 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHCCCcEEec
Confidence 442 3333221 1578999999999999999988752 22223332222111 101111
Q ss_pred hHHHHHH-HhCCCCCCceeeccCCCCCCCCcEEEEEEeCC
Q 021661 269 IVGAYFH-YAGGYEPPQAVDISPNPGRSDPMYVVYSRKAS 307 (309)
Q Consensus 269 ~~~~~f~-~~~Gf~~~~~~~~~~~~~~~~p~~~v~a~k~~ 307 (309)
-+...+. ...++.....+.+.|.....|.+|+..-+|..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfFiA~lrk~~ 308 (470)
T PRK11933 269 PLGDLFPGAEKALTEEGFLHVFPQIYDSEGFFVARLRKTA 308 (470)
T ss_pred cccccccccccccCCCCeEEECCCCCCCcceeeEEEEecC
Confidence 0111010 00112222344555655567889998888874
No 168
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.35 E-value=1.3e-07 Score=81.09 Aligned_cols=95 Identities=19% Similarity=0.204 Sum_probs=72.0
Q ss_pred CCCCeEEEECCCcchhccCCCCC-CeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCCCCCceeEEEeccchhccCCHH
Q 021661 147 TPGVSILDLCSSWVSHFPPGYKQ-DRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPI 225 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~~~~-~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~~ 225 (309)
..+.++||+|+|-|.......|. .+|.+.++|..|..+.+.+---+..-+ +-+. .+-+||+|.|.++|+.-.+|-
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~ynVl~~~---ew~~-t~~k~dli~clNlLDRc~~p~ 186 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNYNVLTEI---EWLQ-TDVKLDLILCLNLLDRCFDPF 186 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCCceeeeh---hhhh-cCceeehHHHHHHHHhhcChH
Confidence 44689999999999776666554 489999999999998776411111111 1111 233699999999999999999
Q ss_pred HHHHHHHhhccc-CcEEEEEe
Q 021661 226 EVFKEMCQVLKP-GGLAIVSF 245 (309)
Q Consensus 226 ~~l~~i~rvLkp-GG~lii~~ 245 (309)
+.|+.|+.+|+| +|.+|++.
T Consensus 187 kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 187 KLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HHHHHHHHHhccCCCcEEEEE
Confidence 999999999999 88777764
No 169
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.35 E-value=1.8e-06 Score=80.13 Aligned_cols=97 Identities=24% Similarity=0.336 Sum_probs=76.0
Q ss_pred CCCCeEEEECCCcchhccCC-CCCCeEEEEeCCHHHHhhCCCCCc--------EEEe-cCCCCCCCCCCCCceeEEEecc
Q 021661 147 TPGVSILDLCSSWVSHFPPG-YKQDRIVGMGMNEEELKRNPVLTE--------YVVQ-DLNLNPKLPFEDNSFDVITNVV 216 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~-~~~~~v~giD~S~~~l~~a~~~i~--------~~~~-D~~~~~~lp~~~~sfDlVis~~ 216 (309)
.+|..|||==||||..+..+ .-+.+++|+|++.+|++-++.|.+ +... |+ .++|++++++|.|++--
T Consensus 196 ~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da---~~lpl~~~~vdaIatDP 272 (347)
T COG1041 196 KRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDA---TNLPLRDNSVDAIATDP 272 (347)
T ss_pred ccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEeccc---ccCCCCCCccceEEecC
Confidence 55889999999999766444 568899999999999999998732 3344 88 89999998999999742
Q ss_pred c------hh--ccCC-HHHHHHHHHhhcccCcEEEEEec
Q 021661 217 S------VD--YLTK-PIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 217 v------l~--~l~d-~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
- .. -+.+ ..++|+.++++||+||.+++..+
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 1 11 0112 46899999999999999988766
No 170
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.31 E-value=1.4e-06 Score=84.54 Aligned_cols=109 Identities=17% Similarity=0.168 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCC
Q 021661 129 PAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLN 199 (309)
Q Consensus 129 ~~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~ 199 (309)
.....+.+.+.+.+.. .++.+|||+|||+|.... .+....+|+|+|+|+.|++.|+++ ++++++|+
T Consensus 275 ~~~~~l~~~~~~~l~~--~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~--- 349 (431)
T TIGR00479 275 GQNEKLVDRALEALEL--QGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTL--- 349 (431)
T ss_pred HHHHHHHHHHHHHhcc--CCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCH---
Confidence 3344445555555432 346799999999995432 223346899999999999987753 78999998
Q ss_pred CC----CCCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEe
Q 021661 200 PK----LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 200 ~~----lp~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~ 245 (309)
.. ++..+++||+|+..--=. .-...+++.+.+ |+|++.++++.
T Consensus 350 ~~~l~~~~~~~~~~D~vi~dPPr~--G~~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 350 ETVLPKQPWAGQIPDVLLLDPPRK--GCAAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred HHHHHHHHhcCCCCCEEEECcCCC--CCCHHHHHHHHh-cCCCEEEEEcC
Confidence 43 223456799999753211 112566666554 89998887764
No 171
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=2.1e-06 Score=74.00 Aligned_cols=107 Identities=23% Similarity=0.231 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHhhCCCCCCCCCeEEEECCCcchhc-----cCCCCCCeEEEEeCCHHHHhhCCCC-------------
Q 021661 127 DDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHF-----PPGYKQDRIVGMGMNEEELKRNPVL------------- 188 (309)
Q Consensus 127 ~~~~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~-----~~~~~~~~v~giD~S~~~l~~a~~~------------- 188 (309)
....+..+.+++..++.+ +.+.||+|.|+|-+. .-..++..++|||.-++.++.++++
T Consensus 65 Ap~mha~~le~L~~~L~p----G~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~ 140 (237)
T KOG1661|consen 65 APHMHATALEYLDDHLQP----GASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSK 140 (237)
T ss_pred chHHHHHHHHHHHHhhcc----CcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhh
Confidence 455666777777776654 899999999988322 2234566679999999999887764
Q ss_pred -----CcEEEecCCCCCCCCCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 189 -----TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 189 -----i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
..++++|. ...-.+...||.|.+... ..+..+++...|||||.++|-..
T Consensus 141 ~~~~~l~ivvGDg---r~g~~e~a~YDaIhvGAa------a~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 141 LKRGELSIVVGDG---RKGYAEQAPYDAIHVGAA------ASELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred hccCceEEEeCCc---cccCCccCCcceEEEccC------ccccHHHHHHhhccCCeEEEeec
Confidence 45778887 666667788999999743 34566788889999998887544
No 172
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.26 E-value=8.9e-06 Score=72.21 Aligned_cols=131 Identities=11% Similarity=0.044 Sum_probs=73.2
Q ss_pred CCCCeEEEECCCcchhccC--CCCCCeEEEEeCCHHHHhh-CCCCCc---EEEecCCCC--CCCCCCCCceeEEEeccch
Q 021661 147 TPGVSILDLCSSWVSHFPP--GYKQDRIVGMGMNEEELKR-NPVLTE---YVVQDLNLN--PKLPFEDNSFDVITNVVSV 218 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~--~~~~~~v~giD~S~~~l~~-a~~~i~---~~~~D~~~~--~~lp~~~~sfDlVis~~vl 218 (309)
.++.++||+|||+|.+... .....+|+|+|++++|+.. .+++.. +...|+... +.++.+-..+|+++++..+
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~~ 153 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLIS 153 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehHh
Confidence 4578999999999965322 2234589999999988874 443322 344444100 1222122367777765433
Q ss_pred hccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhh---cCCCCchhHhHHHHH--HHhCCCCCCceee
Q 021661 219 DYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWT---STGDADHVMIVGAYF--HYAGGYEPPQAVD 287 (309)
Q Consensus 219 ~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~---~~~~~~h~~~~~~~f--~~~~Gf~~~~~~~ 287 (309)
.+..+.+.|+| |.+++-+ .|.|.-..-..-. -.+...|...+.+.. ....||.......
T Consensus 154 --------~l~~i~~~l~~-~~~~~L~-KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (228)
T TIGR00478 154 --------ILPELDLLLNP-NDLTLLF-KPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKIIF 217 (228)
T ss_pred --------HHHHHHHHhCc-CeEEEEc-ChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeEEE
Confidence 48899999999 7655433 3333211101000 113344555555533 2557898665555
No 173
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=2.4e-05 Score=74.08 Aligned_cols=98 Identities=24% Similarity=0.333 Sum_probs=66.1
Q ss_pred CCCCeEEEECCCcc---hhccCCCC--CCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCC---CCCCcee
Q 021661 147 TPGVSILDLCSSWV---SHFPPGYK--QDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLP---FEDNSFD 210 (309)
Q Consensus 147 ~~~~~ILDiGcG~g---~~~~~~~~--~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp---~~~~sfD 210 (309)
.++.+|||+|++.| .++....+ +..|+++|.++.-++..+++ +..+..|. ..++ ...+.||
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~---~~~~~~~~~~~~fD 231 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDA---RRLAELLPGGEKFD 231 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccc---ccccccccccCcCc
Confidence 66899999999755 23333332 45679999999766654432 45777776 3332 2223599
Q ss_pred EEEe------ccchhccCC----------------HHHHHHHHHhhcccCcEEEEEecC
Q 021661 211 VITN------VVSVDYLTK----------------PIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 211 lVis------~~vl~~l~d----------------~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
.|+. ..++..-++ ..++|..+.++|||||.|+.++..
T Consensus 232 ~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 232 RILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred EEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 9994 234432222 147899999999999999999875
No 174
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.21 E-value=4.2e-06 Score=79.82 Aligned_cols=112 Identities=11% Similarity=0.062 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHHhhCCCCCCCCCeEEEECCCcchh-ccCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCC
Q 021661 127 DDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH-FPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLN 197 (309)
Q Consensus 127 ~~~~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~-~~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~ 197 (309)
.....+.+.+.+.+.+.. .++.+|||+|||+|.. +..+.++.+|+|+|+|+.+++.|+++ ++++++|+
T Consensus 214 n~~~~~~l~~~~~~~l~~--~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~- 290 (374)
T TIGR02085 214 NPKVAAQLYATARQWVRE--IPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDS- 290 (374)
T ss_pred CHHHHHHHHHHHHHHHHh--cCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH-
Confidence 334444555555544421 2357999999999954 33445567999999999999877653 67899998
Q ss_pred CCCCC-CCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 198 LNPKL-PFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 198 ~~~~l-p~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
.+. +...++||+|+..---.. -..++++.+. .++|++.++++..
T Consensus 291 --~~~~~~~~~~~D~vi~DPPr~G--~~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 291 --AKFATAQMSAPELVLVNPPRRG--IGKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred --HHHHHhcCCCCCEEEECCCCCC--CcHHHHHHHH-hcCCCeEEEEEeC
Confidence 432 211245999998743221 1245566665 4799999888854
No 175
>PRK04148 hypothetical protein; Provisional
Probab=98.20 E-value=4e-06 Score=67.97 Aligned_cols=79 Identities=15% Similarity=0.228 Sum_probs=55.5
Q ss_pred HHHHHHhhCCCCCCCCCeEEEECCCcchhc--cCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCCCCCCCcee
Q 021661 134 LTKYYSEVFPPSNTPGVSILDLCSSWVSHF--PPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLPFEDNSFD 210 (309)
Q Consensus 134 l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~--~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~lp~~~~sfD 210 (309)
+.+++.+.++. .++.+|||||||.|..+ .....+.+|+++|+++..++.++++ +++++.|+.. .++.+ -..+|
T Consensus 4 i~~~l~~~~~~--~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~-p~~~~-y~~a~ 79 (134)
T PRK04148 4 IAEFIAENYEK--GKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFN-PNLEI-YKNAK 79 (134)
T ss_pred HHHHHHHhccc--ccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCC-CCHHH-HhcCC
Confidence 35556665553 34689999999988422 2334477999999999999988776 7899999942 12222 34589
Q ss_pred EEEecc
Q 021661 211 VITNVV 216 (309)
Q Consensus 211 lVis~~ 216 (309)
+|.+.-
T Consensus 80 liysir 85 (134)
T PRK04148 80 LIYSIR 85 (134)
T ss_pred EEEEeC
Confidence 999854
No 176
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.19 E-value=3.3e-06 Score=72.29 Aligned_cols=98 Identities=23% Similarity=0.329 Sum_probs=65.3
Q ss_pred CCCCeEEEECCCcchhccCC---CCCC---------eEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCC
Q 021661 147 TPGVSILDLCSSWVSHFPPG---YKQD---------RIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFE 205 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~---~~~~---------~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~ 205 (309)
.++..|||--||+|..+..+ .... +++|.|+++++++.+++| +.+.+.|+ ..+++.
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~---~~l~~~ 103 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDA---RELPLP 103 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--G---GGGGGT
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecch---hhcccc
Confidence 45789999999999655322 1222 399999999999988765 67899999 888877
Q ss_pred CCceeEEEeccchhc-cC------C-HHHHHHHHHhhcccCcEEEEEecCc
Q 021661 206 DNSFDVITNVVSVDY-LT------K-PIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 206 ~~sfDlVis~~vl~~-l~------d-~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
++++|+|+++--.-. +. + ..++++++.++|++ ..+++...+.
T Consensus 104 ~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~~ 153 (179)
T PF01170_consen 104 DGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSNR 153 (179)
T ss_dssp TSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESCC
T ss_pred cCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCH
Confidence 889999999732221 11 1 25788999999999 5444444443
No 177
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.19 E-value=3e-06 Score=76.01 Aligned_cols=94 Identities=18% Similarity=0.199 Sum_probs=69.4
Q ss_pred CCCCCeEEEECCCcchhc---c-CCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCC---CCce
Q 021661 146 NTPGVSILDLCSSWVSHF---P-PGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFE---DNSF 209 (309)
Q Consensus 146 ~~~~~~ILDiGcG~g~~~---~-~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~---~~sf 209 (309)
..+|.+|||.|.|.|... . ...|.++|+..|+.++..+.|+++ +++...|+ ..-.++ ++.+
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv---~~~g~~~~~~~~~ 114 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDV---CEEGFDEELESDF 114 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-G---GCG--STT-TTSE
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecce---ecccccccccCcc
Confidence 467999999999988532 2 335789999999999999988764 78899998 443332 3579
Q ss_pred eEEEeccchhccCCHHHHHHHHHhhc-ccCcEEEEEecC
Q 021661 210 DVITNVVSVDYLTKPIEVFKEMCQVL-KPGGLAIVSFSN 247 (309)
Q Consensus 210 DlVis~~vl~~l~d~~~~l~~i~rvL-kpGG~lii~~~~ 247 (309)
|.|+.- +++|-.++..+.++| ||||.+++-.|+
T Consensus 115 DavfLD-----lp~Pw~~i~~~~~~L~~~gG~i~~fsP~ 148 (247)
T PF08704_consen 115 DAVFLD-----LPDPWEAIPHAKRALKKPGGRICCFSPC 148 (247)
T ss_dssp EEEEEE-----SSSGGGGHHHHHHHE-EEEEEEEEEESS
T ss_pred cEEEEe-----CCCHHHHHHHHHHHHhcCCceEEEECCC
Confidence 998864 689999999999999 899988776665
No 178
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.18 E-value=1.5e-06 Score=71.38 Aligned_cols=56 Identities=29% Similarity=0.357 Sum_probs=47.8
Q ss_pred CCCCCCCCceeEEEeccchhccC--CHHHHHHHHHhhcccCcEEEEEecCcchhHHHh
Q 021661 200 PKLPFEDNSFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAI 255 (309)
Q Consensus 200 ~~lp~~~~sfDlVis~~vl~~l~--d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~ 255 (309)
...+|.+++.|+|++.++++|+. .-..++++++|+|||||+|-+++|.-.+....+
T Consensus 39 ~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y 96 (185)
T COG4627 39 NESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLY 96 (185)
T ss_pred hhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHH
Confidence 45678999999999999999996 456899999999999999999999866554444
No 179
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.14 E-value=4.4e-06 Score=75.06 Aligned_cols=102 Identities=14% Similarity=0.137 Sum_probs=71.8
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchh---ccCC-CCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCC
Q 021661 133 ALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPG-YKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLN 199 (309)
Q Consensus 133 ~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~---~~~~-~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~ 199 (309)
++...+.+..+ ..+|||||+++|.. +..+ .+.++|+.+|++++..+.|++ +++++.+|+.
T Consensus 69 ~lL~~l~~~~~-----ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~-- 141 (247)
T PLN02589 69 QFLNMLLKLIN-----AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPAL-- 141 (247)
T ss_pred HHHHHHHHHhC-----CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHH--
Confidence 34444444443 67999999987732 3333 357899999999998887765 3888999883
Q ss_pred CCCCC------CCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 200 PKLPF------EDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 200 ~~lp~------~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
+.|+- ..++||+|+.-.- =......++.+.+.|+|||.+++.
T Consensus 142 e~L~~l~~~~~~~~~fD~iFiDad---K~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 142 PVLDQMIEDGKYHGTFDFIFVDAD---KDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred HHHHHHHhccccCCcccEEEecCC---HHHhHHHHHHHHHhcCCCeEEEEc
Confidence 22331 1368999998643 123567888889999999998886
No 180
>PLN02823 spermine synthase
Probab=98.14 E-value=9.7e-06 Score=76.04 Aligned_cols=95 Identities=17% Similarity=0.216 Sum_probs=67.0
Q ss_pred CCeEEEECCCcchhcc---CCCCCCeEEEEeCCHHHHhhCCCC------------CcEEEecCCCCCCCCCCCCceeEEE
Q 021661 149 GVSILDLCSSWVSHFP---PGYKQDRIVGMGMNEEELKRNPVL------------TEYVVQDLNLNPKLPFEDNSFDVIT 213 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~---~~~~~~~v~giD~S~~~l~~a~~~------------i~~~~~D~~~~~~lp~~~~sfDlVi 213 (309)
+.+||.||+|.|.... ...+..+|+.+|+++++++.+++. ++++.+|+. .-+....++||+|+
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~--~~L~~~~~~yDvIi 181 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDAR--AELEKRDEKFDVII 181 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhH--HHHhhCCCCccEEE
Confidence 6799999999885432 223456899999999999987752 567777772 22333457899999
Q ss_pred eccchhccC-------CHHHHHH-HHHhhcccCcEEEEEec
Q 021661 214 NVVSVDYLT-------KPIEVFK-EMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 214 s~~vl~~l~-------d~~~~l~-~i~rvLkpGG~lii~~~ 246 (309)
+-. ..... --.++++ .+.+.|+|||.+++...
T Consensus 182 ~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 182 GDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred ecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 863 12110 1246887 89999999999887643
No 181
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.14 E-value=2.9e-06 Score=77.41 Aligned_cols=68 Identities=9% Similarity=0.091 Sum_probs=49.9
Q ss_pred CCCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCC-----CCcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPV-----LTEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~-----~i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
.++.+|||||||+|..... +....+|+|+|++++|++.+++ +++++++|+ ..+++++-.+|.|+++.-
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~---~~~~~~~~~~~~vv~NlP 114 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAEDNLTIIEGDA---LKVDLSELQPLKVVANLP 114 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhccCceEEEEChh---hcCCHHHcCcceEEEeCC
Confidence 4578999999999954322 2224589999999999998765 478999999 777654322588888743
No 182
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.10 E-value=1.3e-05 Score=69.22 Aligned_cols=110 Identities=10% Similarity=-0.074 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEECCCcchhccCC-CCC-CeEEEEeCCHHHHhhCCCC---------CcEEEecCCC
Q 021661 130 AIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPG-YKQ-DRIVGMGMNEEELKRNPVL---------TEYVVQDLNL 198 (309)
Q Consensus 130 ~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~-~~~-~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~ 198 (309)
....+...+...+. +.++||++||+|.....+ ..+ .+|+++|.++.+++.++++ ++++++|+.
T Consensus 36 vrea~f~~l~~~~~-----g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~- 109 (189)
T TIGR00095 36 VRELFFNILRPEIQ-----GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSAL- 109 (189)
T ss_pred HHHHHHHHHHHhcC-----CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHH-
Confidence 34444554444333 789999999999654332 223 4899999999998876553 567888872
Q ss_pred CCCCC-C-CC-CceeEEEeccchhccCCHHHHHHHHH--hhcccCcEEEEEecC
Q 021661 199 NPKLP-F-ED-NSFDVITNVVSVDYLTKPIEVFKEMC--QVLKPGGLAIVSFSN 247 (309)
Q Consensus 199 ~~~lp-~-~~-~sfDlVis~~vl~~l~d~~~~l~~i~--rvLkpGG~lii~~~~ 247 (309)
..++ + .. ..||+|+..--... ....+.++.+. .+|+++|.++++...
T Consensus 110 -~~l~~~~~~~~~~dvv~~DPPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 110 -RALKFLAKKPTFDNVIYLDPPFFN-GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred -HHHHHhhccCCCceEEEECcCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 1122 1 12 24788887543322 23345555543 479999999998765
No 183
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.09 E-value=5.4e-06 Score=75.09 Aligned_cols=68 Identities=10% Similarity=0.126 Sum_probs=51.2
Q ss_pred CCCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCC------CCcEEEecCCCCCCCCCCCCceeEEEeccchh
Q 021661 147 TPGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 219 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~------~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~ 219 (309)
.++.+|||||||+|..... .....+|+|+|+++.|++.+++ +++++++|+ ..++++ .||.|+++.-.+
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~---~~~~~~--~~d~Vv~NlPy~ 102 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDA---LKVDLP--EFNKVVSNLPYQ 102 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEEecc---ccCCch--hceEEEEcCCcc
Confidence 4578999999999954322 2225689999999999987654 378899999 676654 489999986543
No 184
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.09 E-value=4.2e-06 Score=74.16 Aligned_cols=99 Identities=16% Similarity=0.229 Sum_probs=73.9
Q ss_pred CeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCC-------C-CCcEEEecCCCCCCC-C--CCCCceeEEEec
Q 021661 150 VSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNP-------V-LTEYVVQDLNLNPKL-P--FEDNSFDVITNV 215 (309)
Q Consensus 150 ~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~-------~-~i~~~~~D~~~~~~l-p--~~~~sfDlVis~ 215 (309)
..+||||||.|.++ +...|...++|||+....+..+- - |+.+++.|+ ..+ + +++++.|-|..+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA---~~~l~~~~~~~sl~~I~i~ 126 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDA---VEVLDYLIPDGSLDKIYIN 126 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCH---HHHHHhcCCCCCeeEEEEE
Confidence 48999999999654 55678899999999987665432 2 578889998 332 2 355699999988
Q ss_pred cchhccCC--------HHHHHHHHHhhcccCcEEEEEecCcchh
Q 021661 216 VSVDYLTK--------PIEVFKEMCQVLKPGGLAIVSFSNRCFW 251 (309)
Q Consensus 216 ~vl~~l~d--------~~~~l~~i~rvLkpGG~lii~~~~~~~~ 251 (309)
+-=-|... ...+++.+.++|||||.+.+.+.+....
T Consensus 127 FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~ 170 (227)
T COG0220 127 FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYF 170 (227)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHH
Confidence 64433321 1589999999999999999987765443
No 185
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.09 E-value=2.9e-06 Score=80.74 Aligned_cols=99 Identities=17% Similarity=0.190 Sum_probs=73.0
Q ss_pred CCeEEEECCCcchhc-cCCCCCC-eEEEEeCCHHHHhhCCCC----------CcEEEecCCCCCCCC---CCCCceeEEE
Q 021661 149 GVSILDLCSSWVSHF-PPGYKQD-RIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPKLP---FEDNSFDVIT 213 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~-~~~~~~~-~v~giD~S~~~l~~a~~~----------i~~~~~D~~~~~~lp---~~~~sfDlVi 213 (309)
+.+|||+-|=||.+. ..+..++ +||+||+|...|+.|++| +.|+++|+. .-+. -...+||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf--~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVF--KWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHH--HHHHHHHhcCCcccEEE
Confidence 889999999666443 3334455 999999999999998875 579999983 2222 2345899999
Q ss_pred ec---------cchhccCCHHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 214 NV---------VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 214 s~---------~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
.- ....-..+....+..+.++|+|||.++++.+...
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 63 1222234677899999999999999988876543
No 186
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=4.2e-06 Score=71.22 Aligned_cols=82 Identities=16% Similarity=0.201 Sum_probs=56.9
Q ss_pred CCCCeEEEECCCcchhc--cCCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSSWVSHF--PPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~--~~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
-.+.+|+|+|||+|.+. .......+|+|+|+.+++++.+++| ++|+++|+ .... ..+|.|+++--
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv---~~~~---~~~dtvimNPP 117 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADV---SDFR---GKFDTVIMNPP 117 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcch---hhcC---CccceEEECCC
Confidence 44779999999999543 2334456999999999999998875 78999999 5553 56889998732
Q ss_pred hhc-c-CCHHHHHHHHHhh
Q 021661 218 VDY-L-TKPIEVFKEMCQV 234 (309)
Q Consensus 218 l~~-l-~d~~~~l~~i~rv 234 (309)
+-- . .-...++..+.++
T Consensus 118 FG~~~rhaDr~Fl~~Ale~ 136 (198)
T COG2263 118 FGSQRRHADRPFLLKALEI 136 (198)
T ss_pred CccccccCCHHHHHHHHHh
Confidence 221 1 1223455555544
No 187
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.08 E-value=2.8e-06 Score=78.53 Aligned_cols=94 Identities=12% Similarity=0.045 Sum_probs=64.4
Q ss_pred CCCCeEEEECCCcchhc--cCCCCCCeEEEEeCCHHHHhhCCC----C-----CcEEEecCCCCCCCCCCCCceeEEEec
Q 021661 147 TPGVSILDLCSSWVSHF--PPGYKQDRIVGMGMNEEELKRNPV----L-----TEYVVQDLNLNPKLPFEDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~--~~~~~~~~v~giD~S~~~l~~a~~----~-----i~~~~~D~~~~~~lp~~~~sfDlVis~ 215 (309)
-++..|||||||+|... .......+|+|+|.|.-+ +.|.+ | ++++++.+ +++.+|.++.|+|++-
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkv---Edi~LP~eKVDiIvSE 134 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKV---EDIELPVEKVDIIVSE 134 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecce---EEEecCccceeEEeeh
Confidence 45889999999999543 222234599999998654 44433 2 78999999 7666667889999986
Q ss_pred cchhcc---CCHHHHHHHHHhhcccCcEEEEE
Q 021661 216 VSVDYL---TKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 216 ~vl~~l---~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
.+=..+ .-...+|-.=-+.|+|||.++=+
T Consensus 135 WMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499|consen 135 WMGYFLLYESMLDSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred hhhHHHHHhhhhhhhhhhhhhccCCCceEccc
Confidence 533332 12344555556889999987543
No 188
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=1e-05 Score=65.89 Aligned_cols=70 Identities=16% Similarity=0.160 Sum_probs=55.6
Q ss_pred CCCCeEEEECCCcchhc-cCC-CCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSSWVSHF-PPG-YKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~-~~~-~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
-.+.+++|+|||.|... ... .....|+|+|+.+++|+.+.+| +++.++|+ ..+.+..+.||.++.+--
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdi---ldle~~~g~fDtaviNpp 123 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDI---LDLELKGGIFDTAVINPP 123 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeec---cchhccCCeEeeEEecCC
Confidence 45889999999988543 333 3456899999999999998876 78999999 677667789999998754
Q ss_pred hh
Q 021661 218 VD 219 (309)
Q Consensus 218 l~ 219 (309)
+.
T Consensus 124 FG 125 (185)
T KOG3420|consen 124 FG 125 (185)
T ss_pred CC
Confidence 43
No 189
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.00 E-value=5.9e-05 Score=70.23 Aligned_cols=124 Identities=12% Similarity=0.143 Sum_probs=77.7
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchh-------ccCCCCCCeEEEEeCCHHHHhhCCCC----------CcEEEe
Q 021661 132 AALTKYYSEVFPPSNTPGVSILDLCSSWVSH-------FPPGYKQDRIVGMGMNEEELKRNPVL----------TEYVVQ 194 (309)
Q Consensus 132 ~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~-------~~~~~~~~~v~giD~S~~~l~~a~~~----------i~~~~~ 194 (309)
+....-+...++ ++..|+|+|||.+.. +........++++|+|.++|+.+.++ +.-+++
T Consensus 64 ~~~~~~Ia~~i~----~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~g 139 (319)
T TIGR03439 64 KKHSSDIAASIP----SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLG 139 (319)
T ss_pred HHHHHHHHHhcC----CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEe
Confidence 333344444444 367999999997742 22223356899999999999865442 333677
Q ss_pred cCCCCCC-CCC--CCCceeEEEec-cchhccCCH--HHHHHHHHh-hcccCcEEEEEecCcchhHHHhhhhh
Q 021661 195 DLNLNPK-LPF--EDNSFDVITNV-VSVDYLTKP--IEVFKEMCQ-VLKPGGLAIVSFSNRCFWTKAISIWT 259 (309)
Q Consensus 195 D~~~~~~-lp~--~~~sfDlVis~-~vl~~l~d~--~~~l~~i~r-vLkpGG~lii~~~~~~~~~~~~~~w~ 259 (309)
|...... ++- ..+...+|+.. .+|.+++.. ..+|+++++ .|+|||.|+|.+-...........|.
T Consensus 140 dy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~ 211 (319)
T TIGR03439 140 TYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYN 211 (319)
T ss_pred cHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhc
Confidence 7732111 221 12335666655 488888644 479999999 99999999998765444444444443
No 190
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.95 E-value=4.4e-05 Score=63.67 Aligned_cols=94 Identities=14% Similarity=0.232 Sum_probs=73.1
Q ss_pred CCCCeEEEECCCcch----hccCCCCCCeEEEEeCCHHHHhhCCCC---CcEEEecCCCCCCCC-----CCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVS----HFPPGYKQDRIVGMGMNEEELKRNPVL---TEYVVQDLNLNPKLP-----FEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~----~~~~~~~~~~v~giD~S~~~l~~a~~~---i~~~~~D~~~~~~lp-----~~~~sfDlVis 214 (309)
.++..|||+|.|+|- .+....+...+++++.|++......+. ++++.+|+ .++. ..+..||.|+|
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda---~~l~~~l~e~~gq~~D~viS 123 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDA---FDLRTTLGEHKGQFFDSVIS 123 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccch---hhHHHHHhhcCCCeeeeEEe
Confidence 557899999999983 344555677999999999998876654 77889998 4443 45667999999
Q ss_pred ccchhccC--CHHHHHHHHHhhcccCcEEEE
Q 021661 215 VVSVDYLT--KPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 215 ~~vl~~l~--d~~~~l~~i~rvLkpGG~lii 243 (309)
..-+-.++ .-.+.|+++...|.+||.++-
T Consensus 124 ~lPll~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 124 GLPLLNFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 88666664 345899999999999996653
No 191
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.94 E-value=1.6e-05 Score=78.82 Aligned_cols=100 Identities=14% Similarity=0.100 Sum_probs=73.2
Q ss_pred CCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCC--CCCCceeEEE
Q 021661 147 TPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLP--FEDNSFDVIT 213 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp--~~~~sfDlVi 213 (309)
.....+||||||.|.++ +...|...++|+|++..-+..+.+ |+.++..|+ ..+. ++++++|.|+
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~---~~~~~~~~~~sv~~i~ 422 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNL---DLILNDLPNNSLDGIY 422 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCH---HHHHHhcCcccccEEE
Confidence 34679999999999654 456788999999999875553321 456777776 3332 5678899999
Q ss_pred eccchhccCC--------HHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 214 NVVSVDYLTK--------PIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 214 s~~vl~~l~d--------~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
.++-=-|... ...+++.+.++|||||.+.+.+.+..
T Consensus 423 i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~ 466 (506)
T PRK01544 423 ILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIEN 466 (506)
T ss_pred EECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHH
Confidence 8875444321 15899999999999999988766543
No 192
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.89 E-value=8.7e-05 Score=66.93 Aligned_cols=157 Identities=18% Similarity=0.188 Sum_probs=82.0
Q ss_pred CeEEEECCCcc--h----hccCCCCCCeEEEEeCCHHHHhhCCC------C--CcEEEecCCCCCCC---C-----CCCC
Q 021661 150 VSILDLCSSWV--S----HFPPGYKQDRIVGMGMNEEELKRNPV------L--TEYVVQDLNLNPKL---P-----FEDN 207 (309)
Q Consensus 150 ~~ILDiGcG~g--~----~~~~~~~~~~v~giD~S~~~l~~a~~------~--i~~~~~D~~~~~~l---p-----~~~~ 207 (309)
...||||||.- . ......|.++|+-+|..+-.+..++. + ..++++|+.....+ | +..+
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~ 149 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD 149 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence 69999999922 1 12334689999999999988886654 2 67999999332111 0 1112
Q ss_pred ceeEEEeccchhccC---CHHHHHHHHHhhcccCcEEEEEecCcc----hhHHHhhhhhcCCCCchhHhHHHHHHHhCCC
Q 021661 208 SFDVITNVVSVDYLT---KPIEVFKEMCQVLKPGGLAIVSFSNRC----FWTKAISIWTSTGDADHVMIVGAYFHYAGGY 280 (309)
Q Consensus 208 sfDlVis~~vl~~l~---d~~~~l~~i~rvLkpGG~lii~~~~~~----~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf 280 (309)
.-=.|+...+|||++ ++..++..+...|-||.+|+|+..... ........|......-+.+...+.-.--.||
T Consensus 150 rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~~~~~~Rs~~ei~~~f~g~ 229 (267)
T PF04672_consen 150 RPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAGSPGRPRSREEIAAFFDGL 229 (267)
T ss_dssp S--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCCS----B-HHHHHHCCTTS
T ss_pred CCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCCCCceecCHHHHHHHcCCC
Confidence 223677788999995 578999999999999999999854322 1233334455444444444444432222466
Q ss_pred CCC--ceeecc---CCCCC-------CCCcEEEEEEeC
Q 021661 281 EPP--QAVDIS---PNPGR-------SDPMYVVYSRKA 306 (309)
Q Consensus 281 ~~~--~~~~~~---~~~~~-------~~p~~~v~a~k~ 306 (309)
+.+ .++... |.+.. .-.+|.-+|||+
T Consensus 230 elvePGlv~~~~WrP~~~~~~~~~~~~~~~~~gVarKp 267 (267)
T PF04672_consen 230 ELVEPGLVPVPRWRPDGPEPDPPDPARVWMYGGVARKP 267 (267)
T ss_dssp EE-TT-SEEGGGSS-STTTTTT--GGGGSEEEEEEE--
T ss_pred ccCCCceecccccCCCCCCcCCCCccceEEEEEEEeCC
Confidence 644 333332 22211 135699999996
No 193
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.86 E-value=4e-05 Score=73.86 Aligned_cols=93 Identities=27% Similarity=0.375 Sum_probs=73.4
Q ss_pred CeEEEECCCcchhccCCCCC--CeEEEEeCCHHHHhhCCC-------CCcEEEecCCCCCCCCCCCCceeEEEeccchhc
Q 021661 150 VSILDLCSSWVSHFPPGYKQ--DRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 220 (309)
Q Consensus 150 ~~ILDiGcG~g~~~~~~~~~--~~v~giD~S~~~l~~a~~-------~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~ 220 (309)
.++|-+|||........+.+ ..|+.+|+|+-.++.... ...+.+.|+ ..+.+++++||+|+--..+++
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~---~~l~fedESFdiVIdkGtlDa 126 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDM---DQLVFEDESFDIVIDKGTLDA 126 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecc---hhccCCCcceeEEEecCcccc
Confidence 39999999988666555443 489999999987764322 278899999 899999999999999999998
Q ss_pred cCC----------HHHHHHHHHhhcccCcE-EEEEe
Q 021661 221 LTK----------PIEVFKEMCQVLKPGGL-AIVSF 245 (309)
Q Consensus 221 l~d----------~~~~l~~i~rvLkpGG~-lii~~ 245 (309)
+-. ....+.+++|+|+|||+ +.+++
T Consensus 127 l~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 127 LFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 731 13568899999999995 45555
No 194
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.85 E-value=1.2e-05 Score=78.23 Aligned_cols=90 Identities=13% Similarity=0.145 Sum_probs=59.2
Q ss_pred CCeEEEECCCcchhc---cCC----CCCCeEEEEeCCHHHHhhC----C-----CCCcEEEecCCCCCCCCCCCCceeEE
Q 021661 149 GVSILDLCSSWVSHF---PPG----YKQDRIVGMGMNEEELKRN----P-----VLTEYVVQDLNLNPKLPFEDNSFDVI 212 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~---~~~----~~~~~v~giD~S~~~l~~a----~-----~~i~~~~~D~~~~~~lp~~~~sfDlV 212 (309)
+..|||||||+|... ..+ ....+|++++-|+.+.... + .+++++++|+ +++..+. +.|+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~---r~v~lpe-kvDII 262 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDM---REVELPE-KVDII 262 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-T---TTSCHSS--EEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcc---cCCCCCC-ceeEE
Confidence 568999999999543 122 1245999999998765432 1 2489999999 7877654 79999
Q ss_pred Eeccchhcc--CCHHHHHHHHHhhcccCcEEE
Q 021661 213 TNVVSVDYL--TKPIEVFKEMCQVLKPGGLAI 242 (309)
Q Consensus 213 is~~vl~~l--~d~~~~l~~i~rvLkpGG~li 242 (309)
||=..=... .-..+.|....|.|||||.++
T Consensus 263 VSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 263 VSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 984321111 123568999999999999764
No 195
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.84 E-value=6.2e-05 Score=67.90 Aligned_cols=66 Identities=11% Similarity=0.133 Sum_probs=47.8
Q ss_pred CCCCeEEEECCCcchhccCC-CCCCeEEEEeCCHHHHhhCCC------CCcEEEecCCCCCCCCCCCCcee---EEEecc
Q 021661 147 TPGVSILDLCSSWVSHFPPG-YKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFD---VITNVV 216 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~-~~~~~v~giD~S~~~l~~a~~------~i~~~~~D~~~~~~lp~~~~sfD---lVis~~ 216 (309)
.++.+|||||||+|...... ....+|+++|+++.|++.+++ +++++.+|+ ..++++ +|| +|+++.
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~---~~~~~~--~~d~~~~vvsNl 102 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVIEGDA---LKVDLP--DFPKQLKVVSNL 102 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEEECch---hcCChh--HcCCcceEEEcC
Confidence 45789999999999644222 223579999999999987654 367889998 676654 466 777765
Q ss_pred c
Q 021661 217 S 217 (309)
Q Consensus 217 v 217 (309)
-
T Consensus 103 P 103 (253)
T TIGR00755 103 P 103 (253)
T ss_pred C
Confidence 4
No 196
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.82 E-value=5.2e-05 Score=72.46 Aligned_cols=92 Identities=18% Similarity=0.168 Sum_probs=67.1
Q ss_pred CCeEEEECCCcchhccC---CCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 149 GVSILDLCSSWVSHFPP---GYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~---~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
+.+|||++||+|..... ..+..+|+++|+++.+++.+++| +++.++|+ ..+....+.||+|+..-
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da---~~~l~~~~~fD~V~lDP- 133 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDA---NALLHEERKFDVVDIDP- 133 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhH---HHHHhhcCCCCEEEECC-
Confidence 46899999998854322 22335899999999999987764 44788887 43221145699999864
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
. ..+..++....+.+++||++.++...
T Consensus 134 ~---Gs~~~~l~~al~~~~~~gilyvSAtD 160 (382)
T PRK04338 134 F---GSPAPFLDSAIRSVKRGGLLCVTATD 160 (382)
T ss_pred C---CCcHHHHHHHHHHhcCCCEEEEEecC
Confidence 1 45678888888889999999998443
No 197
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.82 E-value=7.5e-06 Score=70.35 Aligned_cols=115 Identities=18% Similarity=0.115 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHHhh-CCCCCCCCCeEEEECCCcchhccCC--CCCCeEEEEeCCHHHHhhCCCC---------CcEEEe
Q 021661 127 DDPAIAALTKYYSEV-FPPSNTPGVSILDLCSSWVSHFPPG--YKQDRIVGMGMNEEELKRNPVL---------TEYVVQ 194 (309)
Q Consensus 127 ~~~~~~~l~~~~~~~-l~~~~~~~~~ILDiGcG~g~~~~~~--~~~~~v~giD~S~~~l~~a~~~---------i~~~~~ 194 (309)
.+...+.+.+++... +. +.++||+-||+|..-..+ +...+|+.+|.++..++..++| +..+..
T Consensus 25 ~drvrealFniL~~~~~~-----g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~ 99 (183)
T PF03602_consen 25 TDRVREALFNILQPRNLE-----GARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKG 99 (183)
T ss_dssp SHHHHHHHHHHHHCH-HT-----T-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEES
T ss_pred cHHHHHHHHHHhcccccC-----CCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeecc
Confidence 445566777777766 44 889999999999654332 3345999999999988876654 466777
Q ss_pred cCCCCCCCC---CCCCceeEEEeccchhccCCHHHHHHHHH--hhcccCcEEEEEecCc
Q 021661 195 DLNLNPKLP---FEDNSFDVITNVVSVDYLTKPIEVFKEMC--QVLKPGGLAIVSFSNR 248 (309)
Q Consensus 195 D~~~~~~lp---~~~~sfDlVis~~vl~~l~d~~~~l~~i~--rvLkpGG~lii~~~~~ 248 (309)
|+. ..++ ....+||+|++.--...-....++++.+. .+|+++|+++++....
T Consensus 100 d~~--~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 100 DAF--KFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp SHH--HHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CHH--HHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 752 2222 24678999998643332111367888877 8999999999998764
No 198
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.82 E-value=0.0004 Score=60.88 Aligned_cols=160 Identities=17% Similarity=0.161 Sum_probs=89.6
Q ss_pred HHHHHHHHHhhCC-CCCCCCCeEEEECCCcchhc---cCC-CCCCeEEEEeCCHHHH----hhCC--CCCcEEEecCCCC
Q 021661 131 IAALTKYYSEVFP-PSNTPGVSILDLCSSWVSHF---PPG-YKQDRIVGMGMNEEEL----KRNP--VLTEYVVQDLNLN 199 (309)
Q Consensus 131 ~~~l~~~~~~~l~-~~~~~~~~ILDiGcG~g~~~---~~~-~~~~~v~giD~S~~~l----~~a~--~~i~~~~~D~~~~ 199 (309)
+.+++..+..-+. ....++.+||-+|..+|.+. ... .+.+.|.++++|+... ..|+ .|+--+..|+..+
T Consensus 55 RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P 134 (229)
T PF01269_consen 55 RSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHP 134 (229)
T ss_dssp T-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSG
T ss_pred hhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCCh
Confidence 3455555544333 22466899999999877543 222 4578999999999653 3444 4566678898422
Q ss_pred CCCCCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHH--Hh
Q 021661 200 PKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFH--YA 277 (309)
Q Consensus 200 ~~lp~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~--~~ 277 (309)
.....--+.+|+|++.-+ +-.+.+-++.++...||+||.++|.+-.+.. ....+ .-..+.+-.+ ++
T Consensus 135 ~~Y~~lv~~VDvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~si--------D~t~~--p~~vf~~e~~~L~~ 202 (229)
T PF01269_consen 135 EKYRMLVEMVDVIFQDVA--QPDQARIAALNARHFLKPGGHLIISIKARSI--------DSTAD--PEEVFAEEVKKLKE 202 (229)
T ss_dssp GGGTTTS--EEEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH---------SSSS--HHHHHHHHHHHHHC
T ss_pred HHhhcccccccEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEEEecCcc--------cCcCC--HHHHHHHHHHHHHH
Confidence 222112247999998643 2234456888888999999999887542211 11111 1122222111 55
Q ss_pred CCCCCCceeeccCCCCCCCCcEEEEEEe
Q 021661 278 GGYEPPQAVDISPNPGRSDPMYVVYSRK 305 (309)
Q Consensus 278 ~Gf~~~~~~~~~~~~~~~~p~~~v~a~k 305 (309)
.||++.+.+.+.|-. .-..+|+++.
T Consensus 203 ~~~~~~e~i~LePy~---~dH~~vv~~y 227 (229)
T PF01269_consen 203 EGFKPLEQITLEPYE---RDHAMVVGRY 227 (229)
T ss_dssp TTCEEEEEEE-TTTS---TTEEEEEEEE
T ss_pred cCCChheEeccCCCC---CCcEEEEEEe
Confidence 789998988887743 3335666653
No 199
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.80 E-value=2.5e-05 Score=72.74 Aligned_cols=72 Identities=14% Similarity=0.112 Sum_probs=46.9
Q ss_pred CCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCCC----------CcEE-EecCCC-CCCCCCCCCceeEE
Q 021661 148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVL----------TEYV-VQDLNL-NPKLPFEDNSFDVI 212 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~----------i~~~-~~D~~~-~~~lp~~~~sfDlV 212 (309)
++.++||||||.|.. +....++.+++|+|+++.+++.|+++ +++. +.|... ...+..+++.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 468999999997733 23334578999999999999988764 2332 223210 01111235689999
Q ss_pred Eeccchh
Q 021661 213 TNVVSVD 219 (309)
Q Consensus 213 is~~vl~ 219 (309)
+|+-=++
T Consensus 194 vcNPPf~ 200 (321)
T PRK11727 194 LCNPPFH 200 (321)
T ss_pred EeCCCCc
Confidence 9985443
No 200
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.78 E-value=4.4e-05 Score=68.70 Aligned_cols=99 Identities=13% Similarity=0.056 Sum_probs=65.7
Q ss_pred CCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC------------CCcEEEecCCCCCCCCCCCC-ceeE
Q 021661 148 PGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPKLPFEDN-SFDV 211 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~------------~i~~~~~D~~~~~~lp~~~~-sfDl 211 (309)
.+.+||=||.|.|... ....+..+|+.+|+++.+++.+++ +++++..|+. .-+.-..+ +||+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~--~~l~~~~~~~yDv 153 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGR--KFLKETQEEKYDV 153 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHH--HHHHTSSST-EEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhH--HHHHhccCCcccE
Confidence 3789999999877543 222335699999999999997764 3678888872 11222233 8999
Q ss_pred EEeccchhccC----CHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 212 ITNVVSVDYLT----KPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 212 Vis~~vl~~l~----d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
|+.-..-...+ --.++++.+.++|+|||.+++...++
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~ 194 (246)
T PF01564_consen 154 IIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSP 194 (246)
T ss_dssp EEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred EEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCc
Confidence 99743221111 12689999999999999999876433
No 201
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.77 E-value=2.6e-05 Score=71.95 Aligned_cols=67 Identities=15% Similarity=0.142 Sum_probs=49.3
Q ss_pred CCCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEecc
Q 021661 147 TPGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 216 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis~~ 216 (309)
.++.+|||||||+|..... .....+|+++|+++.|++.+++ +++++++|+ ...++ ..||+|+++.
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Da---l~~~~--~~~d~VvaNl 109 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDA---LKTEF--PYFDVCVANV 109 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCH---hhhcc--cccCEEEecC
Confidence 4578999999999965322 2235689999999999987653 378899998 55543 3689999874
Q ss_pred ch
Q 021661 217 SV 218 (309)
Q Consensus 217 vl 218 (309)
-.
T Consensus 110 PY 111 (294)
T PTZ00338 110 PY 111 (294)
T ss_pred Cc
Confidence 33
No 202
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.77 E-value=8.8e-05 Score=67.28 Aligned_cols=106 Identities=20% Similarity=0.210 Sum_probs=73.7
Q ss_pred HHHHHHHHhhCCC--CCCCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhh-------CCC-C------------
Q 021661 132 AALTKYYSEVFPP--SNTPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKR-------NPV-L------------ 188 (309)
Q Consensus 132 ~~l~~~~~~~l~~--~~~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~-------a~~-~------------ 188 (309)
..+.+.+.+.++. ......+||=-|||.|+.. ..+..+..+.|.|+|--|+-. ..+ +
T Consensus 38 ~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~s 117 (270)
T PF07942_consen 38 SPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFS 117 (270)
T ss_pred HHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceeccc
Confidence 3445566666653 2344679999999999654 444457799999999988632 111 0
Q ss_pred ----------------------------CcEEEecCCCCCCCCCC---CCceeEEEeccchhccCCHHHHHHHHHhhccc
Q 021661 189 ----------------------------TEYVVQDLNLNPKLPFE---DNSFDVITNVVSVDYLTKPIEVFKEMCQVLKP 237 (309)
Q Consensus 189 ----------------------------i~~~~~D~~~~~~lp~~---~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkp 237 (309)
.....+|. ..+..+ .++||+|+.++-|+-..+.-+.|+.|.++|||
T Consensus 118 n~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF---~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkp 194 (270)
T PF07942_consen 118 NQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDF---LEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKP 194 (270)
T ss_pred CCCCHHHhCCceEeCCcCcccccCCCCceeEecCcc---EEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhcc
Confidence 12333443 222223 36899999999999888999999999999999
Q ss_pred CcE
Q 021661 238 GGL 240 (309)
Q Consensus 238 GG~ 240 (309)
||.
T Consensus 195 gG~ 197 (270)
T PF07942_consen 195 GGY 197 (270)
T ss_pred CCE
Confidence 993
No 203
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.75 E-value=1.1e-05 Score=73.95 Aligned_cols=98 Identities=18% Similarity=0.229 Sum_probs=62.9
Q ss_pred CCeEEEECCCcchhccC-CCCC-CeEEEEeCCHHHHhhCCCC----------CcEEEecCCCCCCCC--CCCCceeEEEe
Q 021661 149 GVSILDLCSSWVSHFPP-GYKQ-DRIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPKLP--FEDNSFDVITN 214 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~-~~~~-~~v~giD~S~~~l~~a~~~----------i~~~~~D~~~~~~lp--~~~~sfDlVis 214 (309)
+.+|||+-|=+|.+... +..+ .+|+.+|.|..+++.+++| ++|++.|+. ..+. -..++||+||+
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf--~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVF--KFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HH--HHHHHHHHTT-EEEEEE
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHH--HHHHHHhcCCCCCEEEE
Confidence 78999998865543322 2233 3899999999999987764 678999983 1121 12468999996
Q ss_pred cc------chhccCCHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 215 VV------SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 215 ~~------vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
-- ...-..+..+.+..+.++|+|||.|++....+
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 41 11111356789999999999999987776654
No 204
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.72 E-value=9.7e-05 Score=67.53 Aligned_cols=98 Identities=17% Similarity=0.130 Sum_probs=59.7
Q ss_pred CCCCeEEEECCCcchhccCC---C-CCCeEEEEeCCHHHHhhCCCCCcEE--------EecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHFPPG---Y-KQDRIVGMGMNEEELKRNPVLTEYV--------VQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~---~-~~~~v~giD~S~~~l~~a~~~i~~~--------~~D~~~~~~lp~~~~sfDlVis 214 (309)
..+.+|||+|||.|..+..+ . ...+++++|.|+.|++.++....-. ..+.. ....++ ...|+|++
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~--~~~DLvi~ 108 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLY-RDFLPF--PPDDLVIA 108 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhh-cccccC--CCCcEEEE
Confidence 45679999999977543221 2 2458999999999999776531110 01110 011222 23499999
Q ss_pred ccchhccCC--HHHHHHHHHhhcccCcEEEEEecCc
Q 021661 215 VVSVDYLTK--PIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 215 ~~vl~~l~d--~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
+++|..+++ ...+++++.+.+.+ =+++|+-.++
T Consensus 109 s~~L~EL~~~~r~~lv~~LW~~~~~-~LVlVEpGt~ 143 (274)
T PF09243_consen 109 SYVLNELPSAARAELVRSLWNKTAP-VLVLVEPGTP 143 (274)
T ss_pred ehhhhcCCchHHHHHHHHHHHhccC-cEEEEcCCCh
Confidence 999999986 23566666666654 2445554443
No 205
>PRK00536 speE spermidine synthase; Provisional
Probab=97.68 E-value=7.4e-05 Score=67.62 Aligned_cols=91 Identities=13% Similarity=0.068 Sum_probs=64.9
Q ss_pred CCCeEEEECCCcchhccCCCC-CCeEEEEeCCHHHHhhCCCC------------CcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 148 PGVSILDLCSSWVSHFPPGYK-QDRIVGMGMNEEELKRNPVL------------TEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~~~~-~~~v~giD~S~~~l~~a~~~------------i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.+.+||=||.|-|..+....+ ..+|+.+|+.+++++.+++. ++++. .. .+ ...++||+||.
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~---~~--~~~~~fDVIIv 145 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QL---LD--LDIKKYDLIIC 145 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hh---hh--ccCCcCCEEEE
Confidence 378999999997755533322 24999999999999988873 22221 11 11 12367999998
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
-.. ....+.+.+.++|+|||.++....++.
T Consensus 146 Ds~-----~~~~fy~~~~~~L~~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 146 LQE-----PDIHKIDGLKRMLKEDGVFISVAKHPL 175 (262)
T ss_pred cCC-----CChHHHHHHHHhcCCCcEEEECCCCcc
Confidence 743 457889999999999999998755443
No 206
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.67 E-value=5.6e-05 Score=64.92 Aligned_cols=86 Identities=17% Similarity=0.152 Sum_probs=63.9
Q ss_pred eEEEECCCcc---hhccCCCCCCeEEEEeCCHHHHhh--------CCCCCcEEEecCCCCCCCCCCCCceeEEEeccchh
Q 021661 151 SILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKR--------NPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 219 (309)
Q Consensus 151 ~ILDiGcG~g---~~~~~~~~~~~v~giD~S~~~l~~--------a~~~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~ 219 (309)
+++|||+|.| ..+.-.+|..+++.+|.+..-+.. .-.+++.+...+ ++ +....+||+|++-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~---E~-~~~~~~fd~v~aRA--- 123 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRA---EE-PEYRESFDVVTARA--- 123 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-H---HH-TTTTT-EEEEEEES---
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeee---cc-cccCCCccEEEeeh---
Confidence 8999999966 445556788999999999764332 223588889988 66 44567899999854
Q ss_pred ccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 220 YLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 220 ~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
+.....+++-+.+.|++||.+++-
T Consensus 124 -v~~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 124 -VAPLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp -SSSHHHHHHHHGGGEEEEEEEEEE
T ss_pred -hcCHHHHHHHHHHhcCCCCEEEEE
Confidence 457789999999999999987664
No 207
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.64 E-value=0.0003 Score=65.33 Aligned_cols=88 Identities=22% Similarity=0.204 Sum_probs=64.7
Q ss_pred CCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCC-CC---CcEEEecCCCCCCCCCCCCceeEEEeccchhcc
Q 021661 149 GVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNP-VL---TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYL 221 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~-~~---i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l 221 (309)
-...+|+|.|.|+.+ ...+ .+|-++++....+..+. .. ++.+-+|.. .+.| . -|+|++-.+|||+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~f--p~ik~infdlp~v~~~a~~~~~gV~~v~gdmf--q~~P--~--~daI~mkWiLhdw 249 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKY--PHIKGINFDLPFVLAAAPYLAPGVEHVAGDMF--QDTP--K--GDAIWMKWILHDW 249 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhC--CCCceeecCHHHHHhhhhhhcCCcceeccccc--ccCC--C--cCeEEEEeecccC
Confidence 368999999988543 2333 34777777766655443 33 688888874 3444 3 3699999999999
Q ss_pred CC--HHHHHHHHHhhcccCcEEEEE
Q 021661 222 TK--PIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 222 ~d--~~~~l~~i~rvLkpGG~lii~ 244 (309)
+| ..++|++++..|+|||.+++-
T Consensus 250 tDedcvkiLknC~~sL~~~GkIiv~ 274 (342)
T KOG3178|consen 250 TDEDCVKILKNCKKSLPPGGKIIVV 274 (342)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEE
Confidence 76 469999999999999966553
No 208
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.00088 Score=56.79 Aligned_cols=98 Identities=17% Similarity=0.147 Sum_probs=66.2
Q ss_pred CCeEEEECCCcch---hcc-CCCCCCeEEEEeCCHHHHhh-------CCCCCcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 149 GVSILDLCSSWVS---HFP-PGYKQDRIVGMGMNEEELKR-------NPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 149 ~~~ILDiGcG~g~---~~~-~~~~~~~v~giD~S~~~l~~-------a~~~i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
..-+||||||+|. ++. ...++..+.++|+|+.+++. .+.+++.++.|+. ..+ ..++.|+++.+--
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~--~~l--~~~~VDvLvfNPP 119 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLL--SGL--RNESVDVLVFNPP 119 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHH--hhh--ccCCccEEEECCC
Confidence 5689999999883 222 23467789999999999876 3334788899983 233 3488999986521
Q ss_pred h----------h-----cc--CC----HHHHHHHHHhhcccCcEEEEEecCcch
Q 021661 218 V----------D-----YL--TK----PIEVFKEMCQVLKPGGLAIVSFSNRCF 250 (309)
Q Consensus 218 l----------~-----~l--~d----~~~~l~~i~rvLkpGG~lii~~~~~~~ 250 (309)
. + |. .+ .++++.++-.+|.|.|.+++-+.....
T Consensus 120 YVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~ 173 (209)
T KOG3191|consen 120 YVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANK 173 (209)
T ss_pred cCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcC
Confidence 1 1 11 12 246777788899999988776554333
No 209
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.61 E-value=7.4e-05 Score=69.27 Aligned_cols=109 Identities=21% Similarity=0.316 Sum_probs=67.0
Q ss_pred HHHHHhhCCCCCCCCCeEEEECCCcchhccCCC----------CCCeEEEEeCCHHHHhhCCCC----------CcEEEe
Q 021661 135 TKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGY----------KQDRIVGMGMNEEELKRNPVL----------TEYVVQ 194 (309)
Q Consensus 135 ~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~~----------~~~~v~giD~S~~~l~~a~~~----------i~~~~~ 194 (309)
.+++.+.+.. .++.+|||-+||+|.++..+. ...+++|+|+++.++..++-+ .....+
T Consensus 35 ~~l~~~~~~~--~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~ 112 (311)
T PF02384_consen 35 VDLMVKLLNP--KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQG 112 (311)
T ss_dssp HHHHHHHHTT---TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES
T ss_pred HHHHHhhhhc--cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccc
Confidence 3344444432 456789999999997654332 456899999999998766532 347777
Q ss_pred cCCCCCCCC-CC-CCceeEEEecc--chh-c----c-CC-------------HHHHHHHHHhhcccCcEEEEEecCc
Q 021661 195 DLNLNPKLP-FE-DNSFDVITNVV--SVD-Y----L-TK-------------PIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 195 D~~~~~~lp-~~-~~sfDlVis~~--vl~-~----l-~d-------------~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
|. -..+ .. ...||+|+++- ... + . .+ .-.++..+.+.||+||.+++-+|+.
T Consensus 113 d~---l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~ 186 (311)
T PF02384_consen 113 DS---LENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG 186 (311)
T ss_dssp -T---TTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH
T ss_pred cc---ccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch
Confidence 76 2222 22 46899999873 211 1 0 00 1258899999999999887776643
No 210
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.60 E-value=0.00018 Score=65.78 Aligned_cols=95 Identities=15% Similarity=0.121 Sum_probs=67.6
Q ss_pred CeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCCC------------CcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 150 VSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPVL------------TEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 150 ~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~~------------i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.+||-||.|-|..+ ....+-.+++.+|+++..++.+++. ++.+..|.. .-+.-..++||+|++
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~--~~v~~~~~~fDvIi~ 155 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGV--EFLRDCEEKFDVIIV 155 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHH--HHHHhCCCcCCEEEE
Confidence 69999999977554 3334456999999999999988763 456666652 122222347999998
Q ss_pred ccchhcc-C----CHHHHHHHHHhhcccCcEEEEEecC
Q 021661 215 VVSVDYL-T----KPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 215 ~~vl~~l-~----d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
-..=. . + .-..+++.+++.|+++|+++....+
T Consensus 156 D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 156 DSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred cCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 64322 1 0 1279999999999999999987444
No 211
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.60 E-value=5.5e-05 Score=65.82 Aligned_cols=88 Identities=19% Similarity=0.298 Sum_probs=57.5
Q ss_pred CCCCeEEEECCCcchhccC-C--CCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHFPP-G--YKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~-~--~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.++..|||+.||.|.+... + .+...|+++|++|..++..+++ +..+.+|+ ..+.. .+.||.|++
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~---~~~~~-~~~~drvim 175 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDA---REFLP-EGKFDRVIM 175 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-G---GG----TT-EEEEEE
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCH---HHhcC-ccccCEEEE
Confidence 3489999999998854322 2 3567899999999988765442 67889998 55543 678999998
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEE
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAI 242 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~li 242 (309)
+.- ..-..+|..+.+++|+||.+.
T Consensus 176 ~lp----~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 176 NLP----ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp --T----SSGGGGHHHHHHHEEEEEEEE
T ss_pred CCh----HHHHHHHHHHHHHhcCCcEEE
Confidence 652 233468888999999999764
No 212
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.57 E-value=0.00014 Score=68.83 Aligned_cols=105 Identities=9% Similarity=0.017 Sum_probs=64.7
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCC
Q 021661 131 IAALTKYYSEVFPPSNTPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPK 201 (309)
Q Consensus 131 ~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~ 201 (309)
...+.+.+.+.+.. .+.+|||++||+|... ..+....+|+|+|+|++|++.++++ ++++++|+ .+
T Consensus 183 ~~~l~~~v~~~~~~---~~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~---~~ 256 (353)
T TIGR02143 183 NIKMLEWACEVTQG---SKGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSA---EE 256 (353)
T ss_pred HHHHHHHHHHHhhc---CCCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCH---HH
Confidence 34445555555432 1347999999999543 2333345899999999999987764 67888898 33
Q ss_pred -CC-------C---C-----CCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 202 -LP-------F---E-----DNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 202 -lp-------~---~-----~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
++ + . ...||+|+..-- .-.-..++++.+. +|+++++++..
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP--R~G~~~~~l~~l~---~~~~ivYvsC~ 312 (353)
T TIGR02143 257 FTQAMNGVREFRRLKGIDLKSYNCSTIFVDPP--RAGLDPDTCKLVQ---AYERILYISCN 312 (353)
T ss_pred HHHHHhhccccccccccccccCCCCEEEECCC--CCCCcHHHHHHHH---cCCcEEEEEcC
Confidence 21 0 0 113798887432 1111235555554 47888888854
No 213
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.54 E-value=0.00019 Score=68.25 Aligned_cols=108 Identities=7% Similarity=0.014 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCC
Q 021661 128 DPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNL 198 (309)
Q Consensus 128 ~~~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~ 198 (309)
....+.+.+.+.+.+.. .+.++||++||+|... ..+....+|+|+|+|+.|++.++++ ++++.+|+
T Consensus 189 ~~~~e~l~~~v~~~~~~---~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~-- 263 (362)
T PRK05031 189 AAVNEKMLEWALDATKG---SKGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSA-- 263 (362)
T ss_pred HHHHHHHHHHHHHHhhc---CCCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCH--
Confidence 33445556666665542 1357999999998543 3333345899999999999987764 67899998
Q ss_pred CCC-CC-CC--------------CCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 199 NPK-LP-FE--------------DNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 199 ~~~-lp-~~--------------~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
.+ ++ +. ...||+|+..--= -.-..++++.+.+ |+++++++..
T Consensus 264 -~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR--~G~~~~~l~~l~~---~~~ivyvSC~ 321 (362)
T PRK05031 264 -EEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPR--AGLDDETLKLVQA---YERILYISCN 321 (362)
T ss_pred -HHHHHHHhhcccccccccccccCCCCCEEEECCCC--CCCcHHHHHHHHc---cCCEEEEEeC
Confidence 33 21 10 2258999975321 1112455555544 7788888754
No 214
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.0035 Score=54.12 Aligned_cols=159 Identities=17% Similarity=0.153 Sum_probs=95.7
Q ss_pred HHHHHHHHhhCC-CCCCCCCeEEEECCCcc---hhccCCCCCCeEEEEeCCHHHHh----hCC--CCCcEEEecCCCCCC
Q 021661 132 AALTKYYSEVFP-PSNTPGVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELK----RNP--VLTEYVVQDLNLNPK 201 (309)
Q Consensus 132 ~~l~~~~~~~l~-~~~~~~~~ILDiGcG~g---~~~~~~~~~~~v~giD~S~~~l~----~a~--~~i~~~~~D~~~~~~ 201 (309)
.+++..+..-+. -...++.+||=+|+.+| ++.....+.+.+.|+++|+++.. .++ .|+--+..|++.++.
T Consensus 59 SKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~ 138 (231)
T COG1889 59 SKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEK 138 (231)
T ss_pred hHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHH
Confidence 344444443333 12467899999999655 45555566789999999998654 343 457778889843222
Q ss_pred CCCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHH--HhCC
Q 021661 202 LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFH--YAGG 279 (309)
Q Consensus 202 lp~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~--~~~G 279 (309)
...--+..|+|+.--+= -.+.+-+..++..-||+||.+++..-.++.- --.+.-.++.+-.. +..|
T Consensus 139 Y~~~Ve~VDviy~DVAQ--p~Qa~I~~~Na~~FLk~~G~~~i~iKArSId----------vT~dp~~vf~~ev~kL~~~~ 206 (231)
T COG1889 139 YRHLVEKVDVIYQDVAQ--PNQAEILADNAEFFLKKGGYVVIAIKARSID----------VTADPEEVFKDEVEKLEEGG 206 (231)
T ss_pred hhhhcccccEEEEecCC--chHHHHHHHHHHHhcccCCeEEEEEEeeccc----------ccCCHHHHHHHHHHHHHhcC
Confidence 22222458988864320 1123457889999999999777765432210 01112233333222 5688
Q ss_pred CCCCceeeccCCCCCCCCcEEEEEEe
Q 021661 280 YEPPQAVDISPNPGRSDPMYVVYSRK 305 (309)
Q Consensus 280 f~~~~~~~~~~~~~~~~p~~~v~a~k 305 (309)
|+..+.+++.|.. .-.+.|++++
T Consensus 207 f~i~e~~~LePye---~DH~~i~~~~ 229 (231)
T COG1889 207 FEILEVVDLEPYE---KDHALIVAKY 229 (231)
T ss_pred ceeeEEeccCCcc---cceEEEEEee
Confidence 9999999887754 2235566654
No 215
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.50 E-value=7.3e-05 Score=63.76 Aligned_cols=97 Identities=15% Similarity=0.257 Sum_probs=54.6
Q ss_pred CCCeEEEECCCcchh---ccCCC-CCCeEEEEeCCHHHHhhCCCCCcEEEecCCCC---CCC----CCCCCceeEEEecc
Q 021661 148 PGVSILDLCSSWVSH---FPPGY-KQDRIVGMGMNEEELKRNPVLTEYVVQDLNLN---PKL----PFEDNSFDVITNVV 216 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~---~~~~~-~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~---~~l----p~~~~sfDlVis~~ 216 (309)
++.++||+||+.|.. +.... +..+|+|+|+.+.. -.+++.++++|.... ..+ +-..+.||+|+|-.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~---~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~ 99 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD---PLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSDM 99 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG---S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE--
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc---cccceeeeecccchhhHHHhhhhhccccccCcceecccc
Confidence 468999999997753 22322 46799999998771 113344445554211 111 11126899999976
Q ss_pred chhccCC-----------HHHHHHHHHhhcccCcEEEEEecC
Q 021661 217 SVDYLTK-----------PIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 217 vl~~l~d-----------~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+.....+ ....+.-+...|||||.+++-+..
T Consensus 100 ~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 100 APNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp -----SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred ccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 3332221 134566666889999988876543
No 216
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.00066 Score=58.98 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=67.0
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchh---c-cCCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCC-----C
Q 021661 133 ALTKYYSEVFPPSNTPGVSILDLCSSWVSH---F-PPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKL-----P 203 (309)
Q Consensus 133 ~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~---~-~~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~l-----p 203 (309)
++.++..++ ....++..|+|||+-.|.. + ....+...|+|+|+.|--.-. ++.++++|+.....+ .
T Consensus 32 KL~el~~k~--~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~---~V~~iq~d~~~~~~~~~l~~~ 106 (205)
T COG0293 32 KLLELNEKF--KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIP---GVIFLQGDITDEDTLEKLLEA 106 (205)
T ss_pred HHHHHHHhc--CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCC---CceEEeeeccCccHHHHHHHH
Confidence 444444443 2245689999999965532 2 333455679999998753322 389999999432111 1
Q ss_pred CCCCceeEEEeccc--------hhccCC---HHHHHHHHHhhcccCcEEEEEec
Q 021661 204 FEDNSFDVITNVVS--------VDYLTK---PIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 204 ~~~~sfDlVis~~v--------l~~l~d---~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
+....+|+|+|-.+ .+|... -..++.-+..+|+|||.+++-+-
T Consensus 107 l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 107 LGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred cCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 23445799996421 222211 14567777889999998887644
No 217
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.44 E-value=0.00036 Score=60.64 Aligned_cols=94 Identities=18% Similarity=0.145 Sum_probs=69.3
Q ss_pred CCCCeEEEECCCcc--hhccCCCCCCeEEEEeCCHHHHhhCCC-------CCcEEEecCCCCCCC-CCCCCceeEEEecc
Q 021661 147 TPGVSILDLCSSWV--SHFPPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKL-PFEDNSFDVITNVV 216 (309)
Q Consensus 147 ~~~~~ILDiGcG~g--~~~~~~~~~~~v~giD~S~~~l~~a~~-------~i~~~~~D~~~~~~l-p~~~~sfDlVis~~ 216 (309)
.++.+||+||-|.| ....+..+-.+-+-|+..++.++..+. ++-...+-.. .-+ .+++++||-|+--.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~We--Dvl~~L~d~~FDGI~yDT 177 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWE--DVLNTLPDKHFDGIYYDT 177 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchH--hhhccccccCcceeEeec
Confidence 45899999999977 344555556666778999988886554 3555555541 112 25688899999876
Q ss_pred chhccCCHHHHHHHHHhhcccCcEEE
Q 021661 217 SVDYLTKPIEVFKEMCQVLKPGGLAI 242 (309)
Q Consensus 217 vl~~l~d~~~~l~~i~rvLkpGG~li 242 (309)
--++..|...+.+.+.|+|||+|.+-
T Consensus 178 y~e~yEdl~~~hqh~~rLLkP~gv~S 203 (271)
T KOG1709|consen 178 YSELYEDLRHFHQHVVRLLKPEGVFS 203 (271)
T ss_pred hhhHHHHHHHHHHHHhhhcCCCceEE
Confidence 66777888999999999999999763
No 218
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.41 E-value=0.00024 Score=60.81 Aligned_cols=113 Identities=18% Similarity=0.087 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHh-hCCCCCCCCCeEEEECCCcchhccCC--CCCCeEEEEeCCHHHHhhCCCC---------CcEEEecC
Q 021661 129 PAIAALTKYYSE-VFPPSNTPGVSILDLCSSWVSHFPPG--YKQDRIVGMGMNEEELKRNPVL---------TEYVVQDL 196 (309)
Q Consensus 129 ~~~~~l~~~~~~-~l~~~~~~~~~ILDiGcG~g~~~~~~--~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~ 196 (309)
...+.+.+++.. .+. +.++||+=+|+|..-..+ +...+++.+|.+.......++| .+.+..|+
T Consensus 28 rVREalFNil~~~~i~-----g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da 102 (187)
T COG0742 28 RVREALFNILAPDEIE-----GARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDA 102 (187)
T ss_pred HHHHHHHHhccccccC-----CCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecH
Confidence 344455555554 233 889999988888654333 3345999999999988876654 56777887
Q ss_pred CCCCCCCCCC--CceeEEEeccchh-ccCCHHHHHHH--HHhhcccCcEEEEEecCc
Q 021661 197 NLNPKLPFED--NSFDVITNVVSVD-YLTKPIEVFKE--MCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 197 ~~~~~lp~~~--~sfDlVis~~vl~-~l~d~~~~l~~--i~rvLkpGG~lii~~~~~ 248 (309)
. ..++... ++||+|+.---++ -+.+....+.. -...|+|+|.++++....
T Consensus 103 ~--~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 103 L--RALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred H--HHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 2 2222222 2599999865444 12233344444 457899999999997754
No 219
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.27 E-value=0.0011 Score=58.29 Aligned_cols=90 Identities=13% Similarity=0.148 Sum_probs=65.6
Q ss_pred CCeEEEECCCcc--h-hcc-CCCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCC-----CCCCcee
Q 021661 149 GVSILDLCSSWV--S-HFP-PGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLP-----FEDNSFD 210 (309)
Q Consensus 149 ~~~ILDiGcG~g--~-~~~-~~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp-----~~~~sfD 210 (309)
+.+.||||.=+| . ..+ ...+.++|+++|+++...+.+.+ +++++++++. +.|+ .+.++||
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~--esLd~l~~~~~~~tfD 151 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPAL--ESLDELLADGESGTFD 151 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchh--hhHHHHHhcCCCCcee
Confidence 679999998444 2 222 33457899999999988776543 3889999873 2232 3568899
Q ss_pred EEEeccchhcc-CCHHHHHHHHHhhcccCcEEEEE
Q 021661 211 VITNVVSVDYL-TKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 211 lVis~~vl~~l-~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
.++.- |- .+......++.++||+||.+++.
T Consensus 152 faFvD----adK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 152 FAFVD----ADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred EEEEc----cchHHHHHHHHHHHhhcccccEEEEe
Confidence 99863 33 23458899999999999999886
No 220
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.20 E-value=0.00066 Score=70.01 Aligned_cols=74 Identities=12% Similarity=0.145 Sum_probs=49.3
Q ss_pred eEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCC--CCceeEEEeccch-hccC---CHHHHHHHH---H
Q 021661 171 RIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFE--DNSFDVITNVVSV-DYLT---KPIEVFKEM---C 232 (309)
Q Consensus 171 ~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~--~~sfDlVis~~vl-~~l~---d~~~~l~~i---~ 232 (309)
+++|+|+++.+++.|++| +++.++|+ .+++.+ .++||+|+++--. ..+. +...+.+++ .
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~---~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~l 334 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDV---ADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRL 334 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCCh---hhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHH
Confidence 699999999999988875 67889998 666533 3579999998422 2222 223333333 4
Q ss_pred hhcccCcEEEEEecC
Q 021661 233 QVLKPGGLAIVSFSN 247 (309)
Q Consensus 233 rvLkpGG~lii~~~~ 247 (309)
+...+|+.+++-+++
T Consensus 335 k~~~~g~~~~llt~~ 349 (702)
T PRK11783 335 KQQFGGWNAALFSSS 349 (702)
T ss_pred HHhCCCCeEEEEeCC
Confidence 444488877665554
No 221
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.17 E-value=0.00058 Score=62.97 Aligned_cols=96 Identities=14% Similarity=0.144 Sum_probs=63.6
Q ss_pred CCCCCeEEEECCCcchh--ccCCCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 146 NTPGVSILDLCSSWVSH--FPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 146 ~~~~~~ILDiGcG~g~~--~~~~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
+.++..|||+|||.|.. ++......+|.+++-| +|.+.|++ ++..+.+.+ +++.+++ +.|+||+
T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKi---EdieLPE-k~DviIS 249 (517)
T KOG1500|consen 175 DFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKI---EDIELPE-KVDVIIS 249 (517)
T ss_pred ccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCcc---ccccCch-hccEEEe
Confidence 35678999999998853 3333345689999986 46665554 277888888 7777664 5999998
Q ss_pred ccchhccCC--HHHHHHHHHhhcccCcEEEEEec
Q 021661 215 VVSVDYLTK--PIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 215 ~~vl~~l~d--~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
--+=.-+-+ .-+..-.+++.|||.|.++=++.
T Consensus 250 EPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT~g 283 (517)
T KOG1500|consen 250 EPMGYMLVNERMLESYLHARKWLKPNGKMFPTVG 283 (517)
T ss_pred ccchhhhhhHHHHHHHHHHHhhcCCCCcccCccc
Confidence 542222222 12233345699999998765543
No 222
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.11 E-value=0.0054 Score=59.67 Aligned_cols=92 Identities=15% Similarity=0.187 Sum_probs=60.8
Q ss_pred CCeEEEECCCcchhccCCCCCCeEEEEeCCHH----HHhh--CCCCCcEEEecCCCCCCCCCCCCceeEEEeccchhccC
Q 021661 149 GVSILDLCSSWVSHFPPGYKQDRIVGMGMNEE----ELKR--NPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT 222 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~~~~~~~v~giD~S~~----~l~~--a~~~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~ 222 (309)
-..|+|..+|.|.+.+... ...|..+-.-+. .|.. .+. .--+-.|.. +.++.-+.+||+|.+.+++....
T Consensus 366 iRNVMDMnAg~GGFAAAL~-~~~VWVMNVVP~~~~ntL~vIydRG-LIG~yhDWC--E~fsTYPRTYDLlHA~~lfs~~~ 441 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALI-DDPVWVMNVVPVSGPNTLPVIYDRG-LIGVYHDWC--EAFSTYPRTYDLLHADGLFSLYK 441 (506)
T ss_pred eeeeeeecccccHHHHHhc-cCCceEEEecccCCCCcchhhhhcc-cchhccchh--hccCCCCcchhheehhhhhhhhc
Confidence 4699999999886654433 222444433332 1111 111 112334552 45665568999999999988875
Q ss_pred ---CHHHHHHHHHhhcccCcEEEEE
Q 021661 223 ---KPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 223 ---d~~~~l~~i~rvLkpGG~lii~ 244 (309)
+.+.+|-||-|+|+|||.++|.
T Consensus 442 ~rC~~~~illEmDRILRP~G~~iiR 466 (506)
T PF03141_consen 442 DRCEMEDILLEMDRILRPGGWVIIR 466 (506)
T ss_pred ccccHHHHHHHhHhhcCCCceEEEe
Confidence 5789999999999999999996
No 223
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.11 E-value=0.0003 Score=66.97 Aligned_cols=90 Identities=16% Similarity=0.120 Sum_probs=65.7
Q ss_pred CCeEEEECCCcchhccC-CC---CCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCC-CCCCCceeEEEec
Q 021661 149 GVSILDLCSSWVSHFPP-GY---KQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKL-PFEDNSFDVITNV 215 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~-~~---~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~l-p~~~~sfDlVis~ 215 (309)
+.+|||+.||+|..... +. ...+|+++|+|+.+++..++| +++++.|+ ..+ ....+.||+|...
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da---~~~l~~~~~~fDvIdlD 121 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDA---ANVLRYRNRKFHVIDID 121 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhH---HHHHHHhCCCCCEEEeC
Confidence 36899999998843222 11 235899999999999877654 45777787 332 2223579999885
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEEEe
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii~~ 245 (309)
- . ..+..++..+.+.+++||++.++-
T Consensus 122 P-f---Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 122 P-F---GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred C-C---CCcHHHHHHHHHhcccCCEEEEEe
Confidence 4 2 456789999999999999999883
No 224
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.10 E-value=0.00058 Score=62.20 Aligned_cols=95 Identities=12% Similarity=0.170 Sum_probs=57.2
Q ss_pred CCeEEEECCCcc----hhccCC-CCCCeEEEEeCCHHHHhhCCC----------CCcEEEecCCCCCCCCCCCCceeEEE
Q 021661 149 GVSILDLCSSWV----SHFPPG-YKQDRIVGMGMNEEELKRNPV----------LTEYVVQDLNLNPKLPFEDNSFDVIT 213 (309)
Q Consensus 149 ~~~ILDiGcG~g----~~~~~~-~~~~~v~giD~S~~~l~~a~~----------~i~~~~~D~~~~~~lp~~~~sfDlVi 213 (309)
+.+|+=||||.- ..+... .++..|+++|+++++++.+++ .+.|+.+|. ...+.+-..||+|+
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~---~~~~~dl~~~DvV~ 197 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADV---LDVTYDLKEYDVVF 197 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-G---GGG-GG----SEEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecch---hccccccccCCEEE
Confidence 469999999932 333332 346789999999999887754 278999998 55554446799999
Q ss_pred eccchhcc-CCHHHHHHHHHhhcccCcEEEEEec
Q 021661 214 NVVSVDYL-TKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 214 s~~vl~~l-~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
......-- .+..++|.++.+.++||..+++-..
T Consensus 198 lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 198 LAALVGMDAEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp E-TT-S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred EhhhcccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence 77644422 3678999999999999999988644
No 225
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.003 Score=61.30 Aligned_cols=118 Identities=19% Similarity=0.239 Sum_probs=77.9
Q ss_pred CHHHHHHHHHHHHhhCCCCCCCCCeEEEECCCcchh-ccCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCC
Q 021661 127 DDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH-FPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLN 197 (309)
Q Consensus 127 ~~~~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~-~~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~ 197 (309)
......++.++..+.+.. .++.++||+=||.|.+ +..+....+|+|+|+++++++.|+++ ++|+.+|+
T Consensus 274 N~~~~ekl~~~a~~~~~~--~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~a- 350 (432)
T COG2265 274 NPAVAEKLYETALEWLEL--AGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDA- 350 (432)
T ss_pred CHHHHHHHHHHHHHHHhh--cCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCH-
Confidence 445556677777777763 4568999999998864 45556678999999999999988764 78888998
Q ss_pred CCCCCCC---CCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHH
Q 021661 198 LNPKLPF---EDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTK 253 (309)
Q Consensus 198 ~~~~lp~---~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~ 253 (309)
+.... ....+|+|+..--=.- -.+.+++.+.+ ++|-..+++|. |+..+-.
T Consensus 351 --e~~~~~~~~~~~~d~VvvDPPR~G--~~~~~lk~l~~-~~p~~IvYVSC-NP~TlaR 403 (432)
T COG2265 351 --EEFTPAWWEGYKPDVVVVDPPRAG--ADREVLKQLAK-LKPKRIVYVSC-NPATLAR 403 (432)
T ss_pred --HHHhhhccccCCCCEEEECCCCCC--CCHHHHHHHHh-cCCCcEEEEeC-CHHHHHH
Confidence 55432 2357899987310000 01245555544 57777888874 4444333
No 226
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.05 E-value=0.01 Score=52.51 Aligned_cols=154 Identities=14% Similarity=0.138 Sum_probs=93.4
Q ss_pred CCCCeEEEECCCcchhc--cCCCCCCeEEEEeCCHHHHhhC----CCCCcEEEecCCCCCCCC---CCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSSWVSHF--PPGYKQDRIVGMGMNEEELKRN----PVLTEYVVQDLNLNPKLP---FEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~--~~~~~~~~v~giD~S~~~l~~a----~~~i~~~~~D~~~~~~lp---~~~~sfDlVis~~v 217 (309)
.++..+||||+.+|.+. ++.....+|+|+|..-.++..- .+-+.+...|+ ..+. +. +..|+|+|--+
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~---r~l~~~~~~-~~~d~~v~DvS 153 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNV---RYLTPEDFT-EKPDLIVIDVS 153 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCCh---hhCCHHHcc-cCCCeEEEEee
Confidence 56899999999988654 3444456999999998776532 22244555555 4432 22 25789998776
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEEe-cCcchhHHHhhhh-hcCCCCchhHhHHH--HHHHhCCCCCCceeeccCCCC
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVSF-SNRCFWTKAISIW-TSTGDADHVMIVGA--YFHYAGGYEPPQAVDISPNPG 293 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~~-~~~~~~~~~~~~w-~~~~~~~h~~~~~~--~f~~~~Gf~~~~~~~~~~~~~ 293 (309)
+. ....+|..+..+|+|+|.++.-+ |+-..-......- .-.+...|.....+ -+....||....+.-..-..+
T Consensus 154 FI---SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~Spi~G~ 230 (245)
T COG1189 154 FI---SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIKSPIKGG 230 (245)
T ss_pred hh---hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEccCccCC
Confidence 65 56789999999999999665433 2211111111100 02244455555555 344556999666555433334
Q ss_pred CCCCcEEEEEEeCC
Q 021661 294 RSDPMYVVYSRKAS 307 (309)
Q Consensus 294 ~~~p~~~v~a~k~~ 307 (309)
..+.=|.+..+|..
T Consensus 231 ~GNiE~l~~~~k~~ 244 (245)
T COG1189 231 KGNIEFLLLLKKSG 244 (245)
T ss_pred CCcEeeeeeeeccC
Confidence 44555777777654
No 227
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.05 E-value=0.00079 Score=62.06 Aligned_cols=67 Identities=12% Similarity=0.097 Sum_probs=49.0
Q ss_pred CCCCeEEEECCCcchhc---cCCC-CCCeEEEEeCCHHHHhhCCC------CCcEEEecCCCCCCCC--CCCC--ceeEE
Q 021661 147 TPGVSILDLCSSWVSHF---PPGY-KQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLP--FEDN--SFDVI 212 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~-~~~~v~giD~S~~~l~~a~~------~i~~~~~D~~~~~~lp--~~~~--sfDlV 212 (309)
.++..+||.+||.|.+. .... +.++|+|+|.++.|++.+++ +++++++|. .++. .+++ ++|.|
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f---~~l~~~l~~~~~~vDgI 94 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNF---SNLKEVLAEGLGKVDGI 94 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCH---HHHHHHHHcCCCccCEE
Confidence 45789999999988542 3333 36899999999999998764 477888888 4442 1122 79999
Q ss_pred Eecc
Q 021661 213 TNVV 216 (309)
Q Consensus 213 is~~ 216 (309)
++..
T Consensus 95 l~DL 98 (296)
T PRK00050 95 LLDL 98 (296)
T ss_pred EECC
Confidence 9764
No 228
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.98 E-value=0.002 Score=60.34 Aligned_cols=89 Identities=18% Similarity=0.196 Sum_probs=67.3
Q ss_pred CCeEEEECCCcchhc-cCCCCCC-eEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 149 GVSILDLCSSWVSHF-PPGYKQD-RIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~-~~~~~~~-~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
|.+|||+=+|.|-+. ..+..+. +|+++|+||.+++..++| +..+++|. ......-+.+|-|+++..
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~---rev~~~~~~aDrIim~~p 265 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDA---REVAPELGVADRIIMGLP 265 (341)
T ss_pred CCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccH---HHhhhccccCCEEEeCCC
Confidence 899999988888443 3333333 499999999998876654 67899999 666544477999999763
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
.+..+++..+.+.+|+||.+..-
T Consensus 266 ----~~a~~fl~~A~~~~k~~g~iHyy 288 (341)
T COG2520 266 ----KSAHEFLPLALELLKDGGIIHYY 288 (341)
T ss_pred ----CcchhhHHHHHHHhhcCcEEEEE
Confidence 34567888999999999977553
No 229
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=0.00022 Score=59.19 Aligned_cols=99 Identities=16% Similarity=0.107 Sum_probs=66.9
Q ss_pred CCeEEEECCC-cc---hhccCCCCCCeEEEEeCCHHHHhhCCC----C-------CcEEEecCCCCCCCCCCCCceeEEE
Q 021661 149 GVSILDLCSS-WV---SHFPPGYKQDRIVGMGMNEEELKRNPV----L-------TEYVVQDLNLNPKLPFEDNSFDVIT 213 (309)
Q Consensus 149 ~~~ILDiGcG-~g---~~~~~~~~~~~v~giD~S~~~l~~a~~----~-------i~~~~~D~~~~~~lp~~~~sfDlVi 213 (309)
+.+|||+|.| +| ..++...+...|.-.|-++..++-.++ + +.....+... .....+.++||+|+
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~-aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWG-AQSQQEQHTFDIIL 108 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhh-hHHHHhhCcccEEE
Confidence 6799999999 33 334444577899999999988874432 1 1111122200 11123456899999
Q ss_pred eccchhccCCHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 214 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 214 s~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
|...+-.-...+...+.|.+.|+|.|..++..|.+
T Consensus 109 aADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRR 143 (201)
T KOG3201|consen 109 AADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRR 143 (201)
T ss_pred eccchhHHHHHHHHHHHHHHHhCcccceeEecCcc
Confidence 99877655556788999999999999877776654
No 230
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.95 E-value=0.0044 Score=54.46 Aligned_cols=135 Identities=14% Similarity=0.087 Sum_probs=83.2
Q ss_pred CCeEEEECCCcc---hhccCCCCCCeEEEEeCCHH---HHhhCC-----CCCcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 149 GVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEE---ELKRNP-----VLTEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 149 ~~~ILDiGcG~g---~~~~~~~~~~~v~giD~S~~---~l~~a~-----~~i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
+.+++|||+|.| .-+...+|..+|+-+|.... .|+.+. .+++++++.+ ++..-....||+|+|-.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~Ra---E~~~~~~~~~D~vtsRA- 143 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRA---EEFGQEKKQYDVVTSRA- 143 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhH---hhcccccccCcEEEeeh-
Confidence 579999999966 33445678889999999864 333332 3488888888 77653221299999854
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCceeeccCCCCCCCC
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDP 297 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~~~~~~~~~p 297 (309)
+.+....++-+...+|+||.++.-.. . ...+...-..... ..-||....+.....+. ...+
T Consensus 144 ---va~L~~l~e~~~pllk~~g~~~~~k~------------~--~~~~e~~e~~~a~-~~~~~~~~~~~~~~~p~-~~~~ 204 (215)
T COG0357 144 ---VASLNVLLELCLPLLKVGGGFLAYKG------------L--AGKDELPEAEKAI-LPLGGQVEKVFSLTVPE-LDGE 204 (215)
T ss_pred ---ccchHHHHHHHHHhcccCCcchhhhH------------H--hhhhhHHHHHHHH-HhhcCcEEEEEEeecCC-CCCc
Confidence 44667788888999999987653100 0 0011111112222 33556666666654433 4445
Q ss_pred cEEEEEEeC
Q 021661 298 MYVVYSRKA 306 (309)
Q Consensus 298 ~~~v~a~k~ 306 (309)
..+++.+|.
T Consensus 205 r~l~ii~~~ 213 (215)
T COG0357 205 RHLVIIRKR 213 (215)
T ss_pred eEEEEEecc
Confidence 677777664
No 231
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.93 E-value=0.01 Score=53.53 Aligned_cols=130 Identities=18% Similarity=0.137 Sum_probs=88.1
Q ss_pred CCCCCeEEEECCCcchhc----cCCCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCC--CCCcee
Q 021661 146 NTPGVSILDLCSSWVSHF----PPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPF--EDNSFD 210 (309)
Q Consensus 146 ~~~~~~ILDiGcG~g~~~----~~~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~--~~~sfD 210 (309)
..++.+|||-|.|.|+.. ....|.++++..|+.+.--+.|.+ ++++..-|+ +...| .+..+|
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDV---c~~GF~~ks~~aD 179 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDV---CGSGFLIKSLKAD 179 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeec---ccCCccccccccc
Confidence 367999999999988532 334578999999998776666554 388899998 66544 346688
Q ss_pred EEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHH--HHHhCCCCCCceeec
Q 021661 211 VITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAY--FHYAGGYEPPQAVDI 288 (309)
Q Consensus 211 lVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~--f~~~~Gf~~~~~~~~ 288 (309)
.|+.- ++.|..++-.++.+||.+|.-+.+++. + ++-+.+- ..++.||.+++++.+
T Consensus 180 aVFLD-----lPaPw~AiPha~~~lk~~g~r~csFSP-C-----------------IEQvqrtce~l~~~gf~~i~~vEv 236 (314)
T KOG2915|consen 180 AVFLD-----LPAPWEAIPHAAKILKDEGGRLCSFSP-C-----------------IEQVQRTCEALRSLGFIEIETVEV 236 (314)
T ss_pred eEEEc-----CCChhhhhhhhHHHhhhcCceEEeccH-H-----------------HHHHHHHHHHHHhCCCceEEEEEe
Confidence 87753 678889999999999998844443331 1 1112221 225579999988887
Q ss_pred cCCCCCCCCcEEEEEEeC
Q 021661 289 SPNPGRSDPMYVVYSRKA 306 (309)
Q Consensus 289 ~~~~~~~~p~~~v~a~k~ 306 (309)
.+. +.+.|.+.|.
T Consensus 237 ~~~-----qk~~V~~~~~ 249 (314)
T KOG2915|consen 237 LLV-----QKNGVKTVKL 249 (314)
T ss_pred ehh-----hhhceeeecc
Confidence 662 3355555554
No 232
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.82 E-value=0.0022 Score=63.94 Aligned_cols=68 Identities=15% Similarity=0.056 Sum_probs=41.2
Q ss_pred CCCeEEEECCCcchhccCC---C--------CCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCC--CCCCC
Q 021661 148 PGVSILDLCSSWVSHFPPG---Y--------KQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPK--LPFED 206 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~~---~--------~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~--lp~~~ 206 (309)
...+|||.|||+|.++... . -...++|+|+++..+..++.+ +.....|.-.... .+-..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 3569999999999654221 1 125789999999999877643 2233333210000 01112
Q ss_pred CceeEEEec
Q 021661 207 NSFDVITNV 215 (309)
Q Consensus 207 ~sfDlVis~ 215 (309)
+.||+|+++
T Consensus 111 ~~fD~IIgN 119 (524)
T TIGR02987 111 DLFDIVITN 119 (524)
T ss_pred CcccEEEeC
Confidence 579999987
No 233
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.80 E-value=0.0026 Score=56.84 Aligned_cols=110 Identities=18% Similarity=0.253 Sum_probs=62.3
Q ss_pred HHHHHhhCCCCCCCCCeEEEECCCcc-hhc--cCCCCCCeEEEEeCCHHHHhhCCC-------CCcEEEecCCCCCCCCC
Q 021661 135 TKYYSEVFPPSNTPGVSILDLCSSWV-SHF--PPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPF 204 (309)
Q Consensus 135 ~~~~~~~l~~~~~~~~~ILDiGcG~g-~~~--~~~~~~~~v~giD~S~~~l~~a~~-------~i~~~~~D~~~~~~lp~ 204 (309)
.+++...+.. ..+..+|+|||||.. ..+ ....++..++|+||+..+++.... ..+....|+ ..-+
T Consensus 93 d~fY~~if~~-~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl---~~~~- 167 (251)
T PF07091_consen 93 DEFYDEIFGR-IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDL---LSDP- 167 (251)
T ss_dssp HHHHHHHCCC-S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-T---TTSH-
T ss_pred HHHHHHHHhc-CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeee---eccC-
Confidence 3444455543 345789999999955 333 233456799999999999886443 356777787 3332
Q ss_pred CCCceeEEEeccchhccCCHH-HHHHHHHhhcccCcEEEEEecCcch
Q 021661 205 EDNSFDVITNVVSVDYLTKPI-EVFKEMCQVLKPGGLAIVSFSNRCF 250 (309)
Q Consensus 205 ~~~sfDlVis~~vl~~l~d~~-~~l~~i~rvLkpGG~lii~~~~~~~ 250 (309)
+....|+.+..=+++-+.... ..-.++...++ .=.++|++|.+..
T Consensus 168 ~~~~~DlaLllK~lp~le~q~~g~g~~ll~~~~-~~~~vVSfPtrSL 213 (251)
T PF07091_consen 168 PKEPADLALLLKTLPCLERQRRGAGLELLDALR-SPHVVVSFPTRSL 213 (251)
T ss_dssp TTSEESEEEEET-HHHHHHHSTTHHHHHHHHSC-ESEEEEEEES---
T ss_pred CCCCcchhhHHHHHHHHHHHhcchHHHHHHHhC-CCeEEEecccccc
Confidence 356799999887777664322 12223333332 1278899987543
No 234
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.77 E-value=0.0028 Score=57.19 Aligned_cols=67 Identities=10% Similarity=0.072 Sum_probs=50.5
Q ss_pred CCCCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhhCCC------CCcEEEecCCCCCCCCCCCC-ceeEEEecc
Q 021661 147 TPGVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDN-SFDVITNVV 216 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~a~~------~i~~~~~D~~~~~~lp~~~~-sfDlVis~~ 216 (309)
.++..|||||+|.|.... ......+|+++++.+.+++..++ +++.+.+|+ ...+++.- .++.|+++.
T Consensus 29 ~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~Da---Lk~d~~~l~~~~~vVaNl 103 (259)
T COG0030 29 SPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDA---LKFDFPSLAQPYKVVANL 103 (259)
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCch---hcCcchhhcCCCEEEEcC
Confidence 447899999999996543 33446689999999999886544 377999999 66666542 578888773
No 235
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=96.73 E-value=0.0022 Score=49.94 Aligned_cols=91 Identities=19% Similarity=0.347 Sum_probs=44.7
Q ss_pred ceeEEEeccchhccC------CHHHHHHHHHhhcccCcEEEEEecCcchhHH-------HhhhhhcCCCCchhHhHHHHH
Q 021661 208 SFDVITNVVSVDYLT------KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTK-------AISIWTSTGDADHVMIVGAYF 274 (309)
Q Consensus 208 sfDlVis~~vl~~l~------d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~-------~~~~w~~~~~~~h~~~~~~~f 274 (309)
.||+|+|..|.-|+. -...+|+.+++.|+|||.++++-.....+.+ ....+....- .-.-+.+|+
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~l--rP~~F~~~L 78 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKL--RPDQFEDYL 78 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH------GGGHHHHH
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEE--ChHHHHHHH
Confidence 499999999887763 2468999999999999999999654333321 1111221110 011244555
Q ss_pred HH-hCCCCCCceeeccCC--CCCCCCcEE
Q 021661 275 HY-AGGYEPPQAVDISPN--PGRSDPMYV 300 (309)
Q Consensus 275 ~~-~~Gf~~~~~~~~~~~--~~~~~p~~~ 300 (309)
.. .-||...+.+..... .|..-|+++
T Consensus 79 ~~~evGF~~~e~~~~~~~~~~gF~RpI~l 107 (110)
T PF06859_consen 79 LEPEVGFSSVEELGVPENSSKGFDRPIYL 107 (110)
T ss_dssp TSTTT---EEEEE-------------EEE
T ss_pred HhcccceEEEEEcccCCCCCCCCCCcEEE
Confidence 54 479998887776443 244445443
No 236
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.72 E-value=0.0049 Score=57.70 Aligned_cols=98 Identities=18% Similarity=0.179 Sum_probs=69.6
Q ss_pred CCCeEEEECCCcchhcc--CCCC-CCeEEEEeCCHHHHhhCCCC---------------CcEEEecCCCCCCCCCCCCce
Q 021661 148 PGVSILDLCSSWVSHFP--PGYK-QDRIVGMGMNEEELKRNPVL---------------TEYVVQDLNLNPKLPFEDNSF 209 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~--~~~~-~~~v~giD~S~~~l~~a~~~---------------i~~~~~D~~~~~~lp~~~~sf 209 (309)
...++|-+|.|-|..+. ..+| ..+|+-+|+.|+|++.++.+ ++.+..|+. .-+.-..+.|
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf--~wlr~a~~~f 366 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAF--QWLRTAADMF 366 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHH--HHHHhhcccc
Confidence 35799999999886553 3456 56999999999999998843 566666662 2233344589
Q ss_pred eEEEec------cchhccCCHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 210 DVITNV------VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 210 DlVis~------~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
|.||.. .++-.+. -.++-.-+.|.|+++|++++.-..+
T Consensus 367 D~vIVDl~DP~tps~~rlY-S~eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLY-SVEFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred cEEEEeCCCCCCcchhhhh-hHHHHHHHHHhcCcCceEEEecCCC
Confidence 999853 2222221 1478888999999999999986543
No 237
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.65 E-value=0.00026 Score=59.44 Aligned_cols=98 Identities=13% Similarity=0.227 Sum_probs=55.5
Q ss_pred eEEEECCCcc-hhccCCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCC-C-CCCCc-eeEEEec--
Q 021661 151 SILDLCSSWV-SHFPPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKL-P-FEDNS-FDVITNV-- 215 (309)
Q Consensus 151 ~ILDiGcG~g-~~~~~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~l-p-~~~~s-fDlVis~-- 215 (309)
.|||+.||.| ..+..+....+|+++|+++..++.++.| ++++++|. .++ + +..+. ||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~---~~~~~~~~~~~~~D~vFlSPP 78 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDF---FELLKRLKSNKIFDVVFLSPP 78 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-H---HHHGGGB------SEEEE---
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCH---HHHHhhccccccccEEEECCC
Confidence 6999999865 4555555578999999999999887654 89999998 333 1 22222 8999965
Q ss_pred -----------cch-hccC--CHHHHHHHHHhhcccCcEEEEEecCcchhHHH
Q 021661 216 -----------VSV-DYLT--KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKA 254 (309)
Q Consensus 216 -----------~vl-~~l~--d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~ 254 (309)
+-| ..+. +..++++.+.++- ..+++-+|......+.
T Consensus 79 WGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t---~nv~l~LPRn~dl~ql 128 (163)
T PF09445_consen 79 WGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKIT---PNVVLFLPRNSDLNQL 128 (163)
T ss_dssp BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH----S-EEEEEETTB-HHHH
T ss_pred CCCccccccCccCHHHccCCCCHHHHHHHHHhhC---CCEEEEeCCCCCHHHH
Confidence 222 2222 3456666655553 3466667765544444
No 238
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.64 E-value=0.0054 Score=58.05 Aligned_cols=72 Identities=14% Similarity=0.123 Sum_probs=52.2
Q ss_pred EEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEeccch-hccCC-------HHHHHHHHHhh
Q 021661 172 IVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVVSV-DYLTK-------PIEVFKEMCQV 234 (309)
Q Consensus 172 v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis~~vl-~~l~d-------~~~~l~~i~rv 234 (309)
++|+|+++.|++.|+.| ++|.++|+ ..++.+.+.+|+|||+--. +.+.+ ...+.+.+.+.
T Consensus 257 ~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~---~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~ 333 (381)
T COG0116 257 IYGSDIDPRHIEGAKANARAAGVGDLIEFKQADA---TDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRL 333 (381)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCCceEEEEEcch---hhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHH
Confidence 77999999999998876 89999999 7776554789999998411 12222 13455566677
Q ss_pred cccCcEEEEEec
Q 021661 235 LKPGGLAIVSFS 246 (309)
Q Consensus 235 LkpGG~lii~~~ 246 (309)
++--+..+++..
T Consensus 334 ~~~ws~~v~tt~ 345 (381)
T COG0116 334 LAGWSRYVFTTS 345 (381)
T ss_pred hcCCceEEEEcc
Confidence 776677777654
No 239
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=96.62 E-value=0.0017 Score=59.65 Aligned_cols=98 Identities=24% Similarity=0.350 Sum_probs=66.6
Q ss_pred CCCCeEEEECCCcch---hcc-CCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCC-C-CCCCceeEE
Q 021661 147 TPGVSILDLCSSWVS---HFP-PGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKL-P-FEDNSFDVI 212 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~---~~~-~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~l-p-~~~~sfDlV 212 (309)
.++.+|||+|++.|. ++. .....+.|++.|+++.-+...++ ++.....|. ... + .....||.|
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~---~~~~~~~~~~~fd~V 160 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADA---RKLDPKKPESKFDRV 160 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHH---HHHHHHHHTTTEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecc---ccccccccccccchh
Confidence 458899999998662 232 33347899999999987765443 255555676 333 1 223459999
Q ss_pred Ee----c--cchhccCCH----------------HHHHHHHHhhc----ccCcEEEEEecC
Q 021661 213 TN----V--VSVDYLTKP----------------IEVFKEMCQVL----KPGGLAIVSFSN 247 (309)
Q Consensus 213 is----~--~vl~~l~d~----------------~~~l~~i~rvL----kpGG~lii~~~~ 247 (309)
+. + .++..-++. .+.|+++.+.+ ||||.++.++..
T Consensus 161 lvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 161 LVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp EEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred hcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 94 2 234433321 47899999999 999999998874
No 240
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.60 E-value=0.0032 Score=54.05 Aligned_cols=96 Identities=15% Similarity=0.074 Sum_probs=64.4
Q ss_pred CCCCeEEEECCCcchhc-cCCC-CCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSSWVSHF-PPGY-KQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~-~~~~-~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
-.+.+|||+|+|.|... ..+. ....|+..|+.+..++..+-| +.+...|+ -. ++..||+|+...+
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~---~g---~~~~~Dl~LagDl 151 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADL---IG---SPPAFDLLLAGDL 151 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccc---cC---CCcceeEEEeece
Confidence 45889999999988432 2222 234799999998766644332 56666666 22 4567999999998
Q ss_pred hhccCCHHHHHHHHHhhcccCc-EEEEEecCcc
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGG-LAIVSFSNRC 249 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG-~lii~~~~~~ 249 (309)
+..-+...+.+. ..+.|+..| .+++..+.+.
T Consensus 152 fy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R~ 183 (218)
T COG3897 152 FYNHTEADRLIP-WKDRLAEAGAAVLVGDPGRA 183 (218)
T ss_pred ecCchHHHHHHH-HHHHHHhCCCEEEEeCCCCC
Confidence 776555566777 666777777 5555556543
No 241
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=96.58 E-value=0.00085 Score=55.76 Aligned_cols=97 Identities=23% Similarity=0.328 Sum_probs=62.0
Q ss_pred CCeEEEECCC--cchhccCCCCCCeEEEEeCCHHHHhhC-CCC-CcEEEecCCCCCCCCCCCCceeEEEeccchhccC--
Q 021661 149 GVSILDLCSS--WVSHFPPGYKQDRIVGMGMNEEELKRN-PVL-TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT-- 222 (309)
Q Consensus 149 ~~~ILDiGcG--~g~~~~~~~~~~~v~giD~S~~~l~~a-~~~-i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~-- 222 (309)
+++.+=+|.. |-..........+|..+|.++--++.- +.+ ..+...|.. .+..--.++||.+.|.++++|.-
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~ssi~p~df~--~~~~~y~~~fD~~as~~siEh~GLG 79 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLSSILPVDFA--KNWQKYAGSFDFAASFSSIEHFGLG 79 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccccccccHHHHH--HHHHHhhccchhhheechhcccccc
Confidence 4567777776 444455555566788888776433221 111 122222221 11112246799999999999972
Q ss_pred ---CH------HHHHHHHHhhcccCcEEEEEecC
Q 021661 223 ---KP------IEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 223 ---d~------~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
|| .+.+.++.++|||||.|++.+|-
T Consensus 80 RYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPv 113 (177)
T PF03269_consen 80 RYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPV 113 (177)
T ss_pred ccCCCCCccccHHHHHHHHHhhccCCeEEEEeec
Confidence 22 57899999999999999999885
No 242
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.58 E-value=0.012 Score=55.18 Aligned_cols=105 Identities=18% Similarity=0.117 Sum_probs=67.1
Q ss_pred HHHHHHHhhCCC-----CCCCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHh-hCCCCCcEEEecCCCCCCCCCC
Q 021661 133 ALTKYYSEVFPP-----SNTPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQDLNLNPKLPFE 205 (309)
Q Consensus 133 ~l~~~~~~~l~~-----~~~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~-~a~~~i~~~~~D~~~~~~lp~~ 205 (309)
++.+.+....+. ...++.++|||||+.|... .....+.+|++||..+-.-. ....++...+.|.. ...| +
T Consensus 191 KLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~~L~~~~~V~h~~~d~f--r~~p-~ 267 (357)
T PRK11760 191 KLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQSLMDTGQVEHLRADGF--KFRP-P 267 (357)
T ss_pred HHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCHhhhCCCCEEEEeccCc--ccCC-C
Confidence 555555444321 2356899999999877543 22233669999996652211 12234777777762 3333 2
Q ss_pred CCceeEEEeccchhccCCHHHHHHHHHhhcccC--cEEEEE
Q 021661 206 DNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPG--GLAIVS 244 (309)
Q Consensus 206 ~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpG--G~lii~ 244 (309)
.+.+|+|+|-.+ ..|..+++-|.+.|..| ..+|+.
T Consensus 268 ~~~vDwvVcDmv----e~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 268 RKNVDWLVCDMV----EKPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred CCCCCEEEEecc----cCHHHHHHHHHHHHhcCcccEEEEE
Confidence 567999999654 47889999999999877 245554
No 243
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.51 E-value=0.00072 Score=59.09 Aligned_cols=95 Identities=20% Similarity=0.098 Sum_probs=52.8
Q ss_pred CCCCeEEEECCCcchhccC---CCCCCeEEEEeCCHHHHhhCCC-----------------CCcEEEecCCCCCCCCCCC
Q 021661 147 TPGVSILDLCSSWVSHFPP---GYKQDRIVGMGMNEEELKRNPV-----------------LTEYVVQDLNLNPKLPFED 206 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~---~~~~~~v~giD~S~~~l~~a~~-----------------~i~~~~~D~~~~~~lp~~~ 206 (309)
.++..++|||||.|..... ..+..+.+||++.+...+.|+. .+++.++|. .+.++..
T Consensus 41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf---l~~~~~~ 117 (205)
T PF08123_consen 41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF---LDPDFVK 117 (205)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T---TTHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc---cccHhHh
Confidence 5588999999999965432 2344569999999886654432 156667776 3322110
Q ss_pred ---CceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 207 ---NSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 207 ---~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
..-|+|++++..- -++....|.++..-||+|-.+ |++.
T Consensus 118 ~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~I-Is~~ 158 (205)
T PF08123_consen 118 DIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARI-ISTK 158 (205)
T ss_dssp HHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EE-EESS
T ss_pred hhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEE-EECC
Confidence 2358999987532 234567778888889887665 4543
No 244
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.50 E-value=0.004 Score=56.05 Aligned_cols=65 Identities=11% Similarity=0.043 Sum_probs=49.0
Q ss_pred CCCCCeEEEECCCcchhccCC-CCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEec
Q 021661 146 NTPGVSILDLCSSWVSHFPPG-YKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNV 215 (309)
Q Consensus 146 ~~~~~~ILDiGcG~g~~~~~~-~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis~ 215 (309)
.+++..|||||.|+|...... ..+.+|+++++.+.|+....+ +.+.+++|. -..++ -.||.++++
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~---lK~d~--P~fd~cVsN 130 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDF---LKTDL--PRFDGCVSN 130 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEeccc---ccCCC--cccceeecc
Confidence 467899999999999654332 346799999999999986443 278899998 44443 359999985
No 245
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.42 E-value=0.0046 Score=58.57 Aligned_cols=67 Identities=18% Similarity=0.229 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHhhCCCCCCCCCeEEEECCCcchh-ccCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecC
Q 021661 127 DDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH-FPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDL 196 (309)
Q Consensus 127 ~~~~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~-~~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~ 196 (309)
.......+.+...+.++. . +.+|||+-||.|.. +..+....+|+|+|+++++++.|+++ ++|+.+++
T Consensus 178 N~~~~~~l~~~~~~~l~~--~-~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 178 NPEQNEKLYEQALEWLDL--S-KGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp BHHHHHHHHHHHHHHCTT----TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred cHHHHHHHHHHHHHHhhc--C-CCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 344556777777787774 2 33899999998854 34445567999999999999988763 78888776
No 246
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=96.37 E-value=0.0059 Score=59.46 Aligned_cols=113 Identities=16% Similarity=0.192 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCeEEEECCCcch-hccCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCC
Q 021661 129 PAIAALTKYYSEVFPPSNTPGVSILDLCSSWVS-HFPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLN 199 (309)
Q Consensus 129 ~~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~-~~~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~ 199 (309)
...+.+...+.+++.. ..+..+||++||+|. .+..+.+..+|+|+++++..++-|+.+ ++|+++-+
T Consensus 366 ~~aevLys~i~e~~~l--~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqa--- 440 (534)
T KOG2187|consen 366 SAAEVLYSTIGEWAGL--PADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQA--- 440 (534)
T ss_pred HHHHHHHHHHHHHhCC--CCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccceeeeecch---
Confidence 3445566666666653 456899999999995 456667788999999999999988764 78999955
Q ss_pred CCC-C----CCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 200 PKL-P----FEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 200 ~~l-p----~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+++ + ...++=++|....-=. .-=..++++.+.+.-++--+++++...
T Consensus 441 E~~~~sl~~~~~~~~~~v~iiDPpR-~Glh~~~ik~l~~~~~~~rlvyvSCn~ 492 (534)
T KOG2187|consen 441 EDLFPSLLTPCCDSETLVAIIDPPR-KGLHMKVIKALRAYKNPRRLVYVSCNP 492 (534)
T ss_pred hhccchhcccCCCCCceEEEECCCc-ccccHHHHHHHHhccCccceEEEEcCH
Confidence 332 1 1111233222211000 000135666666665566666666443
No 247
>KOG2730 consensus Methylase [General function prediction only]
Probab=96.11 E-value=0.0049 Score=53.88 Aligned_cols=67 Identities=9% Similarity=0.102 Sum_probs=47.5
Q ss_pred CCeEEEECCC-cchhccCCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCC-CCCCCCCCCceeEEEec
Q 021661 149 GVSILDLCSS-WVSHFPPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNL-NPKLPFEDNSFDVITNV 215 (309)
Q Consensus 149 ~~~ILDiGcG-~g~~~~~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~-~~~lp~~~~sfDlVis~ 215 (309)
...|+|.-|| .|.....+..+..|++||+++.-+..|+.| ++|+++|.-+ ...+.+....+|+|+.+
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 5688888665 345555556688999999999999988876 7899999811 12234444557787765
No 248
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=95.99 E-value=0.019 Score=46.91 Aligned_cols=88 Identities=14% Similarity=0.221 Sum_probs=50.4
Q ss_pred CCCCeEEEECCCcchh---ccC----CCCCCeEEEEeCCHHHHhhCCCC-----------CcEEEecCCCCCCCCCCCCc
Q 021661 147 TPGVSILDLCSSWVSH---FPP----GYKQDRIVGMGMNEEELKRNPVL-----------TEYVVQDLNLNPKLPFEDNS 208 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~---~~~----~~~~~~v~giD~S~~~l~~a~~~-----------i~~~~~D~~~~~~lp~~~~s 208 (309)
.+...|+|+|||.|.. +.. ..+..+|+|+|.++..++.+.++ ..+.+++. ...+ ..+.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~ 99 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDI---ADES-SSDP 99 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccch---hhhc-ccCC
Confidence 4578999999997722 222 13678999999999988765543 34444443 2221 1345
Q ss_pred eeEEEeccchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 209 FDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 209 fDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
.++++.-++=--+. ..+|+...+ |+-.+++
T Consensus 100 ~~~~vgLHaCG~Ls--~~~l~~~~~---~~~~~l~ 129 (141)
T PF13679_consen 100 PDILVGLHACGDLS--DRALRLFIR---PNARFLV 129 (141)
T ss_pred CeEEEEeecccchH--HHHHHHHHH---cCCCEEE
Confidence 67777644333222 244444444 4444443
No 249
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=95.84 E-value=0.017 Score=54.97 Aligned_cols=98 Identities=24% Similarity=0.275 Sum_probs=64.8
Q ss_pred CCCCCeEEEECCCcc---hhc-cCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCC---CCCCcee
Q 021661 146 NTPGVSILDLCSSWV---SHF-PPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLP---FEDNSFD 210 (309)
Q Consensus 146 ~~~~~~ILDiGcG~g---~~~-~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp---~~~~sfD 210 (309)
..++.+|||+|+-.| .++ ......+.|++.|.+..-+...+.+ ......|. ..+| ++. +||
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~---~ef~~~~~~~-~fD 314 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDG---REFPEKEFPG-SFD 314 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCc---ccccccccCc-ccc
Confidence 467899999988432 333 3344567999999998877655443 33344444 3333 333 899
Q ss_pred EEE----ecc--chhcc----------------CCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 211 VIT----NVV--SVDYL----------------TKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 211 lVi----s~~--vl~~l----------------~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
.|+ |+. ++..- .=.++.|..+...+|+||+|+.++..
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 999 333 33221 11257888999999999999999775
No 250
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.81 E-value=0.018 Score=50.17 Aligned_cols=130 Identities=10% Similarity=0.100 Sum_probs=59.4
Q ss_pred CCeEEEECCCcc-hh------ccCCCCCCeEEEEeCCHHHH-----hh--CCCCCcEEEecCCCCCCC---C-C-CCCce
Q 021661 149 GVSILDLCSSWV-SH------FPPGYKQDRIVGMGMNEEEL-----KR--NPVLTEYVVQDLNLNPKL---P-F-EDNSF 209 (309)
Q Consensus 149 ~~~ILDiGcG~g-~~------~~~~~~~~~v~giD~S~~~l-----~~--a~~~i~~~~~D~~~~~~l---p-~-~~~sf 209 (309)
+..|+|+|.=.| +. +....+.++|+|+|+..+.. +. ...+++++++|....+.+ . . .....
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~ 112 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHP 112 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SS
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCc
Confidence 579999998433 21 22334678999999954332 22 114599999998332111 1 1 11223
Q ss_pred eEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHH---hhhhhcCCCCchhHhHHHHHHHhCCCC
Q 021661 210 DVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKA---ISIWTSTGDADHVMIVGAYFHYAGGYE 281 (309)
Q Consensus 210 DlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~---~~~w~~~~~~~h~~~~~~~f~~~~Gf~ 281 (309)
.+|+ -.+-|.-.+..+.|+....+++||+++|++......+... -..|.. .......+.+|++....|+
T Consensus 113 vlVi-lDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~~w~~--g~~p~~av~~fL~~~~~f~ 184 (206)
T PF04989_consen 113 VLVI-LDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDRPWGP--GNNPKTAVKEFLAEHPDFE 184 (206)
T ss_dssp EEEE-ESS----SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS---------------HHHHHHHHHTTTTEE
T ss_pred eEEE-ECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccccccccccccchhh--hhHHHHHHHHHHHHCCCcE
Confidence 3333 3333444566788889999999999999986543222221 123332 1223556677777544343
No 251
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.77 E-value=0.029 Score=48.26 Aligned_cols=97 Identities=18% Similarity=0.193 Sum_probs=56.4
Q ss_pred CCCCCeEEEECCCcc----hhccCCCCCCeEEEEeCCHHHH----------hhCC----CCCcEEEecCCCCCCCCCCCC
Q 021661 146 NTPGVSILDLCSSWV----SHFPPGYKQDRIVGMGMNEEEL----------KRNP----VLTEYVVQDLNLNPKLPFEDN 207 (309)
Q Consensus 146 ~~~~~~ILDiGcG~g----~~~~~~~~~~~v~giD~S~~~l----------~~a~----~~i~~~~~D~~~~~~lp~~~~ 207 (309)
.+++++|+|+=.|.| .+.....+.+.|++.=..+... ..++ .|.+.+-.+. ..++ +.+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~---~A~~-~pq 121 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPL---VALG-APQ 121 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcc---cccC-CCC
Confidence 366999999944433 2333445667888776554311 1111 1244444444 3444 344
Q ss_pred ceeEEEeccchhc-------cCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 208 SFDVITNVVSVDY-------LTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 208 sfDlVis~~vl~~-------l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
..|++..+..-|- -....++..++++.|||||.++++..
T Consensus 122 ~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred cccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence 5677765432221 12457899999999999997776644
No 252
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=95.75 E-value=0.022 Score=48.76 Aligned_cols=90 Identities=17% Similarity=0.128 Sum_probs=64.7
Q ss_pred CCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEeccchh
Q 021661 149 GVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 219 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~ 219 (309)
...+.|+|+|+|... ..+....+|++++.+|.--+.|++| ++.+.+|+ ....+ +.-|+|+|-..=.
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA---~~y~f--e~ADvvicEmlDT 107 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDA---RDYDF--ENADVVICEMLDT 107 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccc---ccccc--cccceeHHHHhhH
Confidence 368999999999543 2333356999999999998888876 67788998 66655 4479998753211
Q ss_pred cc--CCHHHHHHHHHhhcccCcEEEE
Q 021661 220 YL--TKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 220 ~l--~d~~~~l~~i~rvLkpGG~lii 243 (309)
.+ .....+++.+...||-+|.++=
T Consensus 108 aLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 108 ALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred HhhcccccHHHHHHHHHhhcCCcccc
Confidence 11 2345788888888999987653
No 253
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=95.58 E-value=0.35 Score=43.12 Aligned_cols=156 Identities=14% Similarity=0.088 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHHHhhCCC-CCCCCCeEEEECCCcchhccC----CCCCCeEEEEeCCHH----HHhhCCCC--CcEEEec
Q 021661 127 DDPAIAALTKYYSEVFPP-SNTPGVSILDLCSSWVSHFPP----GYKQDRIVGMGMNEE----ELKRNPVL--TEYVVQD 195 (309)
Q Consensus 127 ~~~~~~~l~~~~~~~l~~-~~~~~~~ILDiGcG~g~~~~~----~~~~~~v~giD~S~~----~l~~a~~~--i~~~~~D 195 (309)
.+....+|+.-+.--+.. ...++.+||=+|++.|..... .-|.+-|+++++|+. .+..|+++ +--+.-|
T Consensus 134 WnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiED 213 (317)
T KOG1596|consen 134 WNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIED 213 (317)
T ss_pred eChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeecc
Confidence 344455555444322211 145689999999987755433 246778999999974 45566654 5556667
Q ss_pred CCCCCCCCCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHH
Q 021661 196 LNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFH 275 (309)
Q Consensus 196 ~~~~~~lp~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~ 275 (309)
+.-+......-.-.|+|++--. +-.....+.-++...||+||.++|+.-..+.-..... .+-+..-.+.+
T Consensus 214 ArhP~KYRmlVgmVDvIFaDva--qpdq~RivaLNA~~FLk~gGhfvisikancidstv~a-------e~vFa~Ev~kl- 283 (317)
T KOG1596|consen 214 ARHPAKYRMLVGMVDVIFADVA--QPDQARIVALNAQYFLKNGGHFVISIKANCIDSTVFA-------EAVFAAEVKKL- 283 (317)
T ss_pred CCCchheeeeeeeEEEEeccCC--CchhhhhhhhhhhhhhccCCeEEEEEecccccccccH-------HHHHHHHHHHH-
Confidence 6211111111234677666421 1112234566788899999999998764432111100 00011111123
Q ss_pred HhCCCCCCceeeccCCC
Q 021661 276 YAGGYEPPQAVDISPNP 292 (309)
Q Consensus 276 ~~~Gf~~~~~~~~~~~~ 292 (309)
.+.-+++.+.+.+.|-.
T Consensus 284 qee~lkP~EqvtLEP~e 300 (317)
T KOG1596|consen 284 QEEQLKPKEQVTLEPFE 300 (317)
T ss_pred HHhccCchheecccccc
Confidence 33558888877776643
No 254
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=95.39 E-value=0.036 Score=51.04 Aligned_cols=110 Identities=16% Similarity=0.156 Sum_probs=67.2
Q ss_pred HHHHHHHhhCCCCC--CCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHh-------hCCCC--------------
Q 021661 133 ALTKYYSEVFPPSN--TPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELK-------RNPVL-------------- 188 (309)
Q Consensus 133 ~l~~~~~~~l~~~~--~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~-------~a~~~-------------- 188 (309)
.+.+.+..++|+.. ....+||=-|||.|+.. ..+..+-.+-|-++|--|+= ..+..
T Consensus 133 pii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn 212 (369)
T KOG2798|consen 133 PIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSN 212 (369)
T ss_pred hHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeecccc
Confidence 44555666666532 33567777799988654 34444556667788877652 11110
Q ss_pred -------------------------CcE--EEecCCCCCCCCCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEE
Q 021661 189 -------------------------TEY--VVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLA 241 (309)
Q Consensus 189 -------------------------i~~--~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~l 241 (309)
-.| -.+|.-.-...+-..++||+|+.++-|+--.+.-+.|..|..+|||||..
T Consensus 213 ~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvW 292 (369)
T KOG2798|consen 213 SLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVW 292 (369)
T ss_pred ccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEE
Confidence 001 11222100011112347999999988888888899999999999999965
Q ss_pred E
Q 021661 242 I 242 (309)
Q Consensus 242 i 242 (309)
+
T Consensus 293 i 293 (369)
T KOG2798|consen 293 I 293 (369)
T ss_pred E
Confidence 4
No 255
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.19 E-value=0.0053 Score=47.34 Aligned_cols=89 Identities=13% Similarity=0.170 Sum_probs=40.6
Q ss_pred EEECCCcch---hccCCC-CC--CeEEEEeCCH---HHHhhCC-----CCCcEEEecCCCCCCCC-CCCCceeEEEeccc
Q 021661 153 LDLCSSWVS---HFPPGY-KQ--DRIVGMGMNE---EELKRNP-----VLTEYVVQDLNLNPKLP-FEDNSFDVITNVVS 217 (309)
Q Consensus 153 LDiGcG~g~---~~~~~~-~~--~~v~giD~S~---~~l~~a~-----~~i~~~~~D~~~~~~lp-~~~~sfDlVis~~v 217 (309)
||||+..|. .+.... +. .+++++|..+ ..-+..+ .+++++++|.. +.++ ++.+++|+|+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~--~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSP--DFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-TH--HHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcH--HHHHHcCCCCEEEEEECCC
Confidence 689965442 222222 23 3799999999 3333333 24788888872 1222 33578999997651
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
|..+.....++.+.+.|+|||.+++.
T Consensus 79 -H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 79 -HSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred -CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 21234567889999999999999875
No 256
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=95.16 E-value=0.044 Score=47.89 Aligned_cols=101 Identities=13% Similarity=0.119 Sum_probs=55.7
Q ss_pred CCCCeEEEECCCcchhc-----cCCCCCCeEEEEeCCHHHHhhCCCC---------------------------------
Q 021661 147 TPGVSILDLCSSWVSHF-----PPGYKQDRIVGMGMNEEELKRNPVL--------------------------------- 188 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~-----~~~~~~~~v~giD~S~~~l~~a~~~--------------------------------- 188 (309)
..+.++-|-|||.|-.+ .....-..|+|.|+++++|+.|++|
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 34679999999988322 2222234899999999999988764
Q ss_pred -----------------CcEEEecCCCCC---CCCCCCCceeEEEeccc----hhccC----C-HHHHHHHHHhhcccCc
Q 021661 189 -----------------TEYVVQDLNLNP---KLPFEDNSFDVITNVVS----VDYLT----K-PIEVFKEMCQVLKPGG 239 (309)
Q Consensus 189 -----------------i~~~~~D~~~~~---~lp~~~~sfDlVis~~v----l~~l~----d-~~~~l~~i~rvLkpGG 239 (309)
....+.|++... .++. ....|+|+.-.- -+|-. + ...+|+.++.+|-++.
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~-~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~s 208 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDA-GFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERS 208 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHT-T---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhcc-CCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCc
Confidence 246777773110 0222 223699997532 23322 1 2579999999994445
Q ss_pred EEEEEecCc
Q 021661 240 LAIVSFSNR 248 (309)
Q Consensus 240 ~lii~~~~~ 248 (309)
.++++.-.+
T Consensus 209 VV~v~~k~~ 217 (246)
T PF11599_consen 209 VVAVSDKGR 217 (246)
T ss_dssp EEEEEESSS
T ss_pred EEEEecCCc
Confidence 677754433
No 257
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.11 E-value=0.054 Score=48.61 Aligned_cols=99 Identities=13% Similarity=0.031 Sum_probs=64.7
Q ss_pred CCeEEEECCCcch--hccCCCCCCeEEEEeCCHHHHhh--CCC-----------CCcEEEecCCCCCCCCCCCCc-eeEE
Q 021661 149 GVSILDLCSSWVS--HFPPGYKQDRIVGMGMNEEELKR--NPV-----------LTEYVVQDLNLNPKLPFEDNS-FDVI 212 (309)
Q Consensus 149 ~~~ILDiGcG~g~--~~~~~~~~~~v~giD~S~~~l~~--a~~-----------~i~~~~~D~~~~~~lp~~~~s-fDlV 212 (309)
..+|||+|+|+|. .+.....+.+|+..|+...+... ... .+.....+........+-... ||+|
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli 166 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI 166 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence 5689999888773 33334457789999887654332 111 123333333211111111223 9999
Q ss_pred EeccchhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 213 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 213 is~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+++.++.+...++.++.-++..|-.+|.+++...-
T Consensus 167 lasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~l 201 (248)
T KOG2793|consen 167 LASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPL 201 (248)
T ss_pred EEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEec
Confidence 99999999999999999999999999977666554
No 258
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=94.97 E-value=0.078 Score=43.39 Aligned_cols=70 Identities=19% Similarity=0.439 Sum_probs=45.4
Q ss_pred eEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCC--CCCCceeEEEeccchhccC--------CH---HHHH
Q 021661 171 RIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLP--FEDNSFDVITNVVSVDYLT--------KP---IEVF 228 (309)
Q Consensus 171 ~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp--~~~~sfDlVis~~vl~~l~--------d~---~~~l 228 (309)
+|+|+|+-+++++..+++ ++++..+= +++. .+.+++|+|+.+. -++| .+ ..++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sH---e~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al 75 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSH---ENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKAL 75 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-G---GGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCH---HHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHH
Confidence 589999999999876542 66666554 4443 2335799998874 3332 22 4789
Q ss_pred HHHHhhcccCcEEEEEe
Q 021661 229 KEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 229 ~~i~rvLkpGG~lii~~ 245 (309)
+.+.++|+|||.++|..
T Consensus 76 ~~al~lL~~gG~i~iv~ 92 (140)
T PF06962_consen 76 EAALELLKPGGIITIVV 92 (140)
T ss_dssp HHHHHHEEEEEEEEEEE
T ss_pred HHHHHhhccCCEEEEEE
Confidence 99999999999886653
No 259
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=94.82 E-value=0.2 Score=45.33 Aligned_cols=119 Identities=9% Similarity=0.110 Sum_probs=69.5
Q ss_pred CCCeEEEECCCcchhccCC-CCCCeEEEEeCCHHHHhhCCC------CCcEEEecCCCCCCCCCCC---CceeEEEeccc
Q 021661 148 PGVSILDLCSSWVSHFPPG-YKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFED---NSFDVITNVVS 217 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~~-~~~~~v~giD~S~~~l~~a~~------~i~~~~~D~~~~~~lp~~~---~sfDlVis~~v 217 (309)
++..|||||+|.|...... ....+++++|+++.+.+..++ +++++.+|+ ..+.... +....|+++.-
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~---l~~~~~~~~~~~~~~vv~NlP 106 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVINGDF---LKWDLYDLLKNQPLLVVGNLP 106 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-T---TTSCGGGHCSSSEEEEEEEET
T ss_pred CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceeeecch---hccccHHhhcCCceEEEEEec
Confidence 5889999999988543222 223799999999998875443 588999999 6666444 44567777643
Q ss_pred hhccCCHHHHHHHHHhhcccCc-EEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHH
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGG-LAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYF 274 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG-~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f 274 (309)
. + --..++.++...-+.|= .+++. .+.....+...... ...+..+....+++
T Consensus 107 y-~--is~~il~~ll~~~~~g~~~~~l~-vq~e~a~rl~a~pg-~~~~~~lsv~~q~~ 159 (262)
T PF00398_consen 107 Y-N--ISSPILRKLLELYRFGRVRMVLM-VQKEVAERLLAKPG-SKRYSRLSVLAQAF 159 (262)
T ss_dssp G-T--GHHHHHHHHHHHGGGCEEEEEEE-EEHHHHHHHHTSTT-STTCSHHHHHHHHH
T ss_pred c-c--chHHHHHHHhhcccccccceEEE-EehhhhhhccCCCC-CCccchhhhhhhhh
Confidence 3 2 23456666666434432 22222 22333333333221 23566666666644
No 260
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.80 E-value=0.25 Score=47.21 Aligned_cols=45 Identities=24% Similarity=0.420 Sum_probs=33.4
Q ss_pred CCCCceeEEEeccchhccCCH--------------------------------------HHHHHHHHhhcccCcEEEEEe
Q 021661 204 FEDNSFDVITNVVSVDYLTKP--------------------------------------IEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 204 ~~~~sfDlVis~~vl~~l~d~--------------------------------------~~~l~~i~rvLkpGG~lii~~ 245 (309)
+|.++.++++++.++||+... ..+|+-=.+-|.|||.+++.+
T Consensus 158 fP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~ 237 (386)
T PLN02668 158 FPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVC 237 (386)
T ss_pred cCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEE
Confidence 688999999999999998531 122333345688999999987
Q ss_pred cCc
Q 021661 246 SNR 248 (309)
Q Consensus 246 ~~~ 248 (309)
..+
T Consensus 238 ~Gr 240 (386)
T PLN02668 238 LGR 240 (386)
T ss_pred ecC
Confidence 653
No 261
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.74 E-value=0.08 Score=49.53 Aligned_cols=105 Identities=13% Similarity=0.073 Sum_probs=57.0
Q ss_pred CCCCeEEEECCCcchhccC---CCCCC-eEEEEeCCHHHHhhCC---CC-----CcEEEecCCCC-CCCCCCCCceeEEE
Q 021661 147 TPGVSILDLCSSWVSHFPP---GYKQD-RIVGMGMNEEELKRNP---VL-----TEYVVQDLNLN-PKLPFEDNSFDVIT 213 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~---~~~~~-~v~giD~S~~~l~~a~---~~-----i~~~~~D~~~~-~~lp~~~~sfDlVi 213 (309)
..+++|||+|.|.|..+.. ..|.. .++-++.|+..-++.. ++ ..+-..|.... ..+|.. ..|++|+
T Consensus 112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~a-d~ytl~i 190 (484)
T COG5459 112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAA-DLYTLAI 190 (484)
T ss_pred cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCcc-ceeehhh
Confidence 4567899999986643332 23433 5677777776544321 12 22222332110 233322 3466666
Q ss_pred eccchhccCC---HHHHHHHHHhhcccCcEEEE-EecCcchhH
Q 021661 214 NVVSVDYLTK---PIEVFKEMCQVLKPGGLAIV-SFSNRCFWT 252 (309)
Q Consensus 214 s~~vl~~l~d---~~~~l~~i~rvLkpGG~lii-~~~~~~~~~ 252 (309)
..+-|-+... ....++.+..++.|||.|+| +-.++.-|.
T Consensus 191 ~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~ 233 (484)
T COG5459 191 VLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFE 233 (484)
T ss_pred hhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHH
Confidence 5554433322 23588999999999997655 444454443
No 262
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=94.56 E-value=0.18 Score=43.23 Aligned_cols=93 Identities=14% Similarity=0.137 Sum_probs=57.3
Q ss_pred CCCCeEEEECCCcchhc----cCCCCCCeEEEEeCCHHHHhhCCCCCcEEEe-cCCCC-------CCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHF----PPGYKQDRIVGMGMNEEELKRNPVLTEYVVQ-DLNLN-------PKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~----~~~~~~~~v~giD~S~~~l~~a~~~i~~~~~-D~~~~-------~~lp~~~~sfDlVis 214 (309)
.++.+|||+||-.|+.. ....|.+.|.|+|+-.-. ..+-+.++++ |+... +. +++...|+|++
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~---p~~Ga~~i~~~dvtdp~~~~ki~e~--lp~r~VdvVlS 142 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE---PPEGATIIQGNDVTDPETYRKIFEA--LPNRPVDVVLS 142 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc---CCCCcccccccccCCHHHHHHHHHh--CCCCcccEEEe
Confidence 55899999999766432 344589999999985431 2222556665 66321 12 35678999998
Q ss_pred ccchhc----cCCH-------HHHHHHHHhhcccCcEEEEE
Q 021661 215 VVSVDY----LTKP-------IEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 215 ~~vl~~----l~d~-------~~~l~~i~rvLkpGG~lii~ 244 (309)
-..=.. +.|. ..++--....++|+|.++.-
T Consensus 143 DMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK 183 (232)
T KOG4589|consen 143 DMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK 183 (232)
T ss_pred ccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE
Confidence 532111 1122 23444455678899988774
No 263
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=94.54 E-value=0.3 Score=44.88 Aligned_cols=41 Identities=10% Similarity=0.082 Sum_probs=29.4
Q ss_pred CCCCeEEEECCCcc---hhccCCC-CCCeEEEEeCCHHHHhhCCC
Q 021661 147 TPGVSILDLCSSWV---SHFPPGY-KQDRIVGMGMNEEELKRNPV 187 (309)
Q Consensus 147 ~~~~~ILDiGcG~g---~~~~~~~-~~~~v~giD~S~~~l~~a~~ 187 (309)
.++...+|.--|.| ..++... +.++++|+|-.+.+++.|++
T Consensus 22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~ 66 (314)
T COG0275 22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKE 66 (314)
T ss_pred CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHH
Confidence 55789999844433 3334444 45689999999999998776
No 264
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=94.50 E-value=0.11 Score=45.09 Aligned_cols=37 Identities=16% Similarity=0.328 Sum_probs=27.4
Q ss_pred CCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhh
Q 021661 148 PGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKR 184 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~ 184 (309)
+...+.|||||.|.++ ...+|..-+.|++|-...-+.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdY 99 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDY 99 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHH
Confidence 3578999999977544 345677889999997665543
No 265
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=94.46 E-value=0.022 Score=46.16 Aligned_cols=46 Identities=7% Similarity=0.057 Sum_probs=32.9
Q ss_pred eEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecC
Q 021661 151 SILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDL 196 (309)
Q Consensus 151 ~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~ 196 (309)
.+||||||.|.. +....+..+|+++|+++.+.+.++++ +.++...+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al 57 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAV 57 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeee
Confidence 489999998843 33345566899999999998865543 45555555
No 266
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.24 E-value=0.15 Score=50.70 Aligned_cols=99 Identities=15% Similarity=0.237 Sum_probs=64.3
Q ss_pred CCCCeEEEECCC-cchhc--cCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCC--------CCC----------C
Q 021661 147 TPGVSILDLCSS-WVSHF--PPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNP--------KLP----------F 204 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~~--~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~--------~lp----------~ 204 (309)
.++.+|+=+||| .|... ....-+++|+++|.+++-++++++. .++...|..... .+. +
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~ 242 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF 242 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence 468999999999 33221 1122356899999999999988875 454444431100 000 0
Q ss_pred CC--CceeEEEeccchhccCCHHHHHHHHHhhcccCcEEE-EEe
Q 021661 205 ED--NSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAI-VSF 245 (309)
Q Consensus 205 ~~--~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~li-i~~ 245 (309)
.+ ..+|+||.......-+.|..+.+++.+.+||||.++ +..
T Consensus 243 ~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 243 AEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 11 359999988766544456555699999999999764 444
No 267
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=94.00 E-value=0.049 Score=50.26 Aligned_cols=73 Identities=14% Similarity=0.046 Sum_probs=36.9
Q ss_pred CCeEEEECCCcchhcc---CCCCCCeEEEEeCCHHHHhhCCCC----------CcEEEecCC--CCCCCCCCCCceeEEE
Q 021661 149 GVSILDLCSSWVSHFP---PGYKQDRIVGMGMNEEELKRNPVL----------TEYVVQDLN--LNPKLPFEDNSFDVIT 213 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~---~~~~~~~v~giD~S~~~l~~a~~~----------i~~~~~D~~--~~~~lp~~~~sfDlVi 213 (309)
..++||||+|....++ ....+.+++|+|+++..++.|+++ |+++...-. ....+..+.+.||+.+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 5799999999553221 122478999999999999987653 555544321 1122223446899999
Q ss_pred eccchhcc
Q 021661 214 NVVSVDYL 221 (309)
Q Consensus 214 s~~vl~~l 221 (309)
|+--++.-
T Consensus 183 CNPPFy~s 190 (299)
T PF05971_consen 183 CNPPFYSS 190 (299)
T ss_dssp E-----SS
T ss_pred cCCccccC
Confidence 98766543
No 268
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=93.61 E-value=0.048 Score=49.54 Aligned_cols=94 Identities=16% Similarity=0.049 Sum_probs=55.0
Q ss_pred CCCCeEEEECCCcchhccCC--CCCCeEEEEeCCHHHHhhCCCC---C---------------cEEEe---cCCCCCCCC
Q 021661 147 TPGVSILDLCSSWVSHFPPG--YKQDRIVGMGMNEEELKRNPVL---T---------------EYVVQ---DLNLNPKLP 203 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~--~~~~~v~giD~S~~~l~~a~~~---i---------------~~~~~---D~~~~~~lp 203 (309)
..+.+|||+|||.+.--..+ .....++..|+|.+.++.-.-. + ..... |. ..+-
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg---~~~~ 191 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDG---VFNH 191 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccc---hhhh
Confidence 34789999999977432222 2236899999999887522110 0 11111 11 0000
Q ss_pred CCCCceeEEEeccchhccCCHHHH-HHHHHhhcccCcEEEE
Q 021661 204 FEDNSFDVITNVVSVDYLTKPIEV-FKEMCQVLKPGGLAIV 243 (309)
Q Consensus 204 ~~~~sfDlVis~~vl~~l~d~~~~-l~~i~rvLkpGG~lii 243 (309)
.....||+|.++..+......... .......++++|.+.+
T Consensus 192 t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~ 232 (282)
T KOG2920|consen 192 TERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYV 232 (282)
T ss_pred ccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhh
Confidence 011268888888877766665555 6666777788886654
No 269
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.51 E-value=0.15 Score=47.80 Aligned_cols=93 Identities=15% Similarity=0.199 Sum_probs=59.7
Q ss_pred CCCCCeEEEECCC-cch---hccCCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCCCCCceeEEEeccchhcc
Q 021661 146 NTPGVSILDLCSS-WVS---HFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYL 221 (309)
Q Consensus 146 ~~~~~~ILDiGcG-~g~---~~~~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l 221 (309)
..++.+|+=+|+| .|. .++.+. +.+|+++|.|++-++.|++.-.-...+.......+.-.+.||+|+..-.
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~---- 238 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG---- 238 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC----
Confidence 4668999999998 222 223323 5899999999999988887622222221100222211234999988654
Q ss_pred CCHHHHHHHHHhhcccCcEEEE-Eec
Q 021661 222 TKPIEVFKEMCQVLKPGGLAIV-SFS 246 (309)
Q Consensus 222 ~d~~~~l~~i~rvLkpGG~lii-~~~ 246 (309)
...+....+.||+||.+++ ..+
T Consensus 239 ---~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 ---PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ---hhhHHHHHHHHhcCCEEEEECCC
Confidence 4678889999999997655 344
No 270
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=93.39 E-value=0.23 Score=44.00 Aligned_cols=91 Identities=13% Similarity=0.085 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEECCCcchhccCC---CCCCeEEEEeCCHHHHhhCCCC----------CcEE-Eec
Q 021661 130 AIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPG---YKQDRIVGMGMNEEELKRNPVL----------TEYV-VQD 195 (309)
Q Consensus 130 ~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~---~~~~~v~giD~S~~~l~~a~~~----------i~~~-~~D 195 (309)
.+..+.+++.+.-...+.++.++||||.|-.-.++.. ..+.+.+|.|+++..++.|+.. ++.. +.|
T Consensus 60 Yih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~ 139 (292)
T COG3129 60 YIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKD 139 (292)
T ss_pred HHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccC
Confidence 4456777777665555567889999999966444433 2367999999999998877642 3332 222
Q ss_pred CCC-CCCCCCCCCceeEEEeccchhc
Q 021661 196 LNL-NPKLPFEDNSFDVITNVVSVDY 220 (309)
Q Consensus 196 ~~~-~~~lp~~~~sfDlVis~~vl~~ 220 (309)
-.- ...+--..+.||+++|+--+|.
T Consensus 140 ~~~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 140 SDAIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred ccccccccccccceeeeEecCCCcch
Confidence 200 0111112567999999987764
No 271
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=93.37 E-value=0.17 Score=44.22 Aligned_cols=88 Identities=16% Similarity=0.080 Sum_probs=52.7
Q ss_pred EEEECCCcc---hhccCCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEeccchh
Q 021661 152 ILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 219 (309)
Q Consensus 152 ILDiGcG~g---~~~~~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~ 219 (309)
|.||||--| ..+.......+++++|+++.-++.|+++ +++..+|.- ..++. .+..|.|+.+.+=-
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL--~~l~~-~e~~d~ivIAGMGG 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGL--EVLKP-GEDVDTIVIAGMGG 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGG--GG--G-GG---EEEEEEE-H
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcc--cccCC-CCCCCEEEEecCCH
Confidence 689999655 3344444455899999999999987763 788888851 33432 22378888765432
Q ss_pred ccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 220 YLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 220 ~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
.+ ..++|++....++..-.|++.
T Consensus 78 ~l--I~~ILe~~~~~~~~~~~lILq 100 (205)
T PF04816_consen 78 EL--IIEILEAGPEKLSSAKRLILQ 100 (205)
T ss_dssp HH--HHHHHHHTGGGGTT--EEEEE
T ss_pred HH--HHHHHHhhHHHhccCCeEEEe
Confidence 21 456777777777766677775
No 272
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=92.81 E-value=0.24 Score=46.72 Aligned_cols=102 Identities=18% Similarity=0.205 Sum_probs=60.6
Q ss_pred CCCCCeEEEECCCcch----hccCCC---CCCeEEEEeCCHHHHhh----CCC----CCcEEEecCCCCCCC------CC
Q 021661 146 NTPGVSILDLCSSWVS----HFPPGY---KQDRIVGMGMNEEELKR----NPV----LTEYVVQDLNLNPKL------PF 204 (309)
Q Consensus 146 ~~~~~~ILDiGcG~g~----~~~~~~---~~~~v~giD~S~~~l~~----a~~----~i~~~~~D~~~~~~l------p~ 204 (309)
..++.+|||+|+-.|. .+.... ..+.|++-|.+..-+.. .+. ++.....|+....+. +.
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~ 232 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDK 232 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchh
Confidence 5679999999886442 222222 14589999999864432 211 133334444111111 22
Q ss_pred CCCceeEEEec------cchhccCCH-----------------HHHHHHHHhhcccCcEEEEEecC
Q 021661 205 EDNSFDVITNV------VSVDYLTKP-----------------IEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 205 ~~~sfDlVis~------~vl~~l~d~-----------------~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+...||-|++- .++.+-++. ..+|.+-.++||+||.++-++..
T Consensus 233 ~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCS 298 (375)
T KOG2198|consen 233 EQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCS 298 (375)
T ss_pred hhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccC
Confidence 34569999852 123322211 36788999999999999999875
No 273
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=92.48 E-value=0.39 Score=47.29 Aligned_cols=107 Identities=15% Similarity=0.173 Sum_probs=69.8
Q ss_pred HHHHHHHhhCCCCCCC-CCeEEEECCCcchh-------ccCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecC
Q 021661 133 ALTKYYSEVFPPSNTP-GVSILDLCSSWVSH-------FPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDL 196 (309)
Q Consensus 133 ~l~~~~~~~l~~~~~~-~~~ILDiGcG~g~~-------~~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~ 196 (309)
.+.+.+....+....+ ...|+=+|+|-|-. ........++++++-+|+++..... +++.+..|+
T Consensus 351 Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DM 430 (649)
T KOG0822|consen 351 AILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDM 430 (649)
T ss_pred HHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccc
Confidence 4444455554432222 33455559996622 1222346689999999987764332 388999999
Q ss_pred CCCCCCCCCCCceeEEEeccchhccCC---HHHHHHHHHhhcccCcEEEE
Q 021661 197 NLNPKLPFEDNSFDVITNVVSVDYLTK---PIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 197 ~~~~~lp~~~~sfDlVis~~vl~~l~d---~~~~l~~i~rvLkpGG~lii 243 (309)
..++.++++.|++++-. |--+.| -.+.|..+.+.|||+|..|=
T Consensus 431 ---R~w~ap~eq~DI~VSEL-LGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 431 ---RKWNAPREQADIIVSEL-LGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred ---cccCCchhhccchHHHh-hccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 78875568899998743 232322 26899999999999987653
No 274
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=92.24 E-value=1.6 Score=36.69 Aligned_cols=110 Identities=18% Similarity=0.171 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCeEEEECCCcchhc-cC-CCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCC--
Q 021661 128 DPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHF-PP-GYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLP-- 203 (309)
Q Consensus 128 ~~~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~-~~-~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp-- 203 (309)
+.....+.+.+.+... ...+|+=|||=+.-.. .. ..+..+++-.|+..+.-....+ .|+.-|.+....+|
T Consensus 9 ~~T~~~l~~~l~~~~~----~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~~~--~F~fyD~~~p~~~~~~ 82 (162)
T PF10237_consen 9 DETAEFLARELLDGAL----DDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFGGD--EFVFYDYNEPEELPEE 82 (162)
T ss_pred HHHHHHHHHHHHHhcC----CCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcCCc--ceEECCCCChhhhhhh
Confidence 3444555555555433 2679999999755322 22 3457799999999988775543 58888886444554
Q ss_pred CCCCceeEEEeccchhccCC--HHHHHHHHHhhcccCcEEEEEec
Q 021661 204 FEDNSFDVITNVVSVDYLTK--PIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 204 ~~~~sfDlVis~~vl~~l~d--~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
+ .++||+|++---+ +.+ ..+....+.-++|+++.+++.++
T Consensus 83 l-~~~~d~vv~DPPF--l~~ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 83 L-KGKFDVVVIDPPF--LSEECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred c-CCCceEEEECCCC--CCHHHHHHHHHHHHHHhCccceEEEecH
Confidence 3 5789999986444 221 24566777777788888888765
No 275
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=92.20 E-value=0.24 Score=45.96 Aligned_cols=66 Identities=11% Similarity=0.128 Sum_probs=45.9
Q ss_pred CCCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCC-------CCcEEEecCCCCCCCC-----CCCCceeE
Q 021661 147 TPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLP-----FEDNSFDV 211 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~-------~i~~~~~D~~~~~~lp-----~~~~sfDl 211 (309)
.++..++|.=+|.|.+ +....+.++|+|+|.++.+++.+++ ++.+++++. .+++ ...+++|.
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF---~~l~~~l~~~~~~~vDg 95 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNF---ANFFEHLDELLVTKIDG 95 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCH---HHHHHHHHhcCCCcccE
Confidence 4578999998887643 3333345899999999999987764 366777776 4432 12356888
Q ss_pred EEec
Q 021661 212 ITNV 215 (309)
Q Consensus 212 Vis~ 215 (309)
|+..
T Consensus 96 Il~D 99 (305)
T TIGR00006 96 ILVD 99 (305)
T ss_pred EEEe
Confidence 8854
No 276
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.30 E-value=0.36 Score=44.86 Aligned_cols=94 Identities=11% Similarity=0.114 Sum_probs=62.0
Q ss_pred CCCCCeEEEECCC-cc---hhccCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCC--CCC------CCCCCceeEE
Q 021661 146 NTPGVSILDLCSS-WV---SHFPPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLN--PKL------PFEDNSFDVI 212 (309)
Q Consensus 146 ~~~~~~ILDiGcG-~g---~~~~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~--~~l------p~~~~sfDlV 212 (309)
.+.+.+||=+|+| .| ...+++....+|+.+|+++.-|+.|++. .+.+.-+.... ..+ -+....+|+.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 3558999999999 34 2345566677999999999999999984 12211111000 000 0223458888
Q ss_pred EeccchhccCCHHHHHHHHHhhcccCcEEEEEe
Q 021661 213 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 213 is~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~ 245 (309)
+.+..++ ..++.....+|+||.+++.-
T Consensus 247 ~dCsG~~------~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 247 FDCSGAE------VTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred EEccCch------HHHHHHHHHhccCCEEEEec
Confidence 8776554 66777788999999876653
No 277
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=91.22 E-value=0.85 Score=43.44 Aligned_cols=97 Identities=14% Similarity=0.120 Sum_probs=59.4
Q ss_pred CCCCeEEEECCCc-chh---ccCCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCC-----C-CC-CCCceeEEEec
Q 021661 147 TPGVSILDLCSSW-VSH---FPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPK-----L-PF-EDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG~-g~~---~~~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~-----l-p~-~~~sfDlVis~ 215 (309)
.++.+||.+|||. |.. +.......+|+++|.++++++.+++.......+... .+ + .+ ....+|+|+-.
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~-~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEE-VDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCc-chHHHHHHHHHcCCCCCCEEEEC
Confidence 4578999999984 432 223332346999999999998877641111222210 10 1 11 22369999875
Q ss_pred cc-----------hhc----cCCHHHHHHHHHhhcccCcEEEEE
Q 021661 216 VS-----------VDY----LTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 216 ~v-----------l~~----l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
.. +.| ..+....+.++.+.|+|+|.+++-
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred CCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 32 111 245577899999999999977653
No 278
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=90.72 E-value=0.97 Score=44.81 Aligned_cols=111 Identities=17% Similarity=0.231 Sum_probs=69.8
Q ss_pred HHHHHhhCCCCCCCCCeEEEECCCcchhccCCC-----C--CCeEEEEeCCHHHHhhCCCC-----Cc----EEEecCCC
Q 021661 135 TKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGY-----K--QDRIVGMGMNEEELKRNPVL-----TE----YVVQDLNL 198 (309)
Q Consensus 135 ~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~~-----~--~~~v~giD~S~~~l~~a~~~-----i~----~~~~D~~~ 198 (309)
.+++.+.+.+ .+..+|.|-.||+|..+..+. . ...++|.|+++.+...++-+ ++ ...+|.-
T Consensus 175 ~~liv~~l~~--~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl- 251 (489)
T COG0286 175 SELIVELLDP--EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTL- 251 (489)
T ss_pred HHHHHHHcCC--CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccc-
Confidence 4555555554 346699999999886543221 1 36799999999998887764 32 2233321
Q ss_pred CCCCCC----CCCceeEEEeccch---hcc---------------------C-CHHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 199 NPKLPF----EDNSFDVITNVVSV---DYL---------------------T-KPIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 199 ~~~lp~----~~~sfDlVis~~vl---~~l---------------------~-d~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
.+... ..+.||.|+++--+ .|. + ....+++.+...|+|||...|.+++..
T Consensus 252 -~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~gv 330 (489)
T COG0286 252 -SNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDGV 330 (489)
T ss_pred -cCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCCc
Confidence 11112 33679999986322 111 0 115799999999999997777666543
No 279
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=90.57 E-value=1.3 Score=39.82 Aligned_cols=96 Identities=15% Similarity=0.204 Sum_probs=60.8
Q ss_pred CCeEEEECCCcch---hccCC----CCCCeEEEEeCCHHHHhhCCC-----C----CcEEEecCCCC-CCCCCCCCcee-
Q 021661 149 GVSILDLCSSWVS---HFPPG----YKQDRIVGMGMNEEELKRNPV-----L----TEYVVQDLNLN-PKLPFEDNSFD- 210 (309)
Q Consensus 149 ~~~ILDiGcG~g~---~~~~~----~~~~~v~giD~S~~~l~~a~~-----~----i~~~~~D~~~~-~~lp~~~~sfD- 210 (309)
+..++|+|+|+.. .+..+ ..-.+++.+|+|+..++...+ . +.-+++|.... ..+| ..+--
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~--~~~~Rl 156 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP--RGGRRL 156 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc--CCCeEE
Confidence 6799999999652 22222 223589999999998874221 1 44566666211 1222 22222
Q ss_pred EEEeccchhccC--CHHHHHHHHHhhcccCcEEEEEec
Q 021661 211 VITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 211 lVis~~vl~~l~--d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
.++....|-.+. +-..+|.++...|+||-.+++.+.
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecc
Confidence 333445777774 345799999999999998888753
No 280
>PRK11524 putative methyltransferase; Provisional
Probab=90.14 E-value=0.2 Score=45.93 Aligned_cols=55 Identities=20% Similarity=0.190 Sum_probs=35.6
Q ss_pred CcEEEecCCCCCCC--CCCCCceeEEEeccc--h--h------------ccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 189 TEYVVQDLNLNPKL--PFEDNSFDVITNVVS--V--D------------YLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 189 i~~~~~D~~~~~~l--p~~~~sfDlVis~~v--l--~------------~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
..++++|. .+. .+++++||+|++.-- + . ++.-....|.++.|+|||||.+++...
T Consensus 9 ~~i~~gD~---~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 9 KTIIHGDA---LTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred CEEEeccH---HHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 45667776 332 245778899888421 1 0 111125789999999999998877533
No 281
>PRK13699 putative methylase; Provisional
Probab=90.00 E-value=0.22 Score=44.17 Aligned_cols=52 Identities=23% Similarity=0.310 Sum_probs=33.4
Q ss_pred cEEEecCCCCCCC--CCCCCceeEEEecc--ch--hc-----c--C---C-HHHHHHHHHhhcccCcEEEEE
Q 021661 190 EYVVQDLNLNPKL--PFEDNSFDVITNVV--SV--DY-----L--T---K-PIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 190 ~~~~~D~~~~~~l--p~~~~sfDlVis~~--vl--~~-----l--~---d-~~~~l~~i~rvLkpGG~lii~ 244 (309)
+++.+|. .++ .++++++|+|+..- .+ .. + . + ...++.+++|+|||||.+++-
T Consensus 3 ~l~~gD~---le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 3 RFILGNC---IDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred eEEechH---HHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 4566666 332 46688888888751 11 10 0 0 1 257899999999999987653
No 282
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=89.80 E-value=0.73 Score=49.77 Aligned_cols=98 Identities=11% Similarity=0.028 Sum_probs=61.8
Q ss_pred CCeEEEECCCcc-hhccCCCCCCeEEEEeCCHHHHhhCC--CCCcEEEecCCCCCCCC-CCCCceeEEEeccchhcc---
Q 021661 149 GVSILDLCSSWV-SHFPPGYKQDRIVGMGMNEEELKRNP--VLTEYVVQDLNLNPKLP-FEDNSFDVITNVVSVDYL--- 221 (309)
Q Consensus 149 ~~~ILDiGcG~g-~~~~~~~~~~~v~giD~S~~~l~~a~--~~i~~~~~D~~~~~~lp-~~~~sfDlVis~~vl~~l--- 221 (309)
+..+||+|.|-. +.+....+...|+.+|.-|-.--.+. ....|++.|. .... .....+|.+.|.+.|-.-
T Consensus 823 ~~~~lDLGTGPE~RiLsliP~~~pvtmvD~RP~ae~m~~w~t~T~y~~~DY---l~~~~~~~~~~D~vtailSLGAAaA~ 899 (1289)
T PF06016_consen 823 PDHWLDLGTGPECRILSLIPPDTPVTMVDTRPFAEPMNCWNTQTQYIQADY---LSDAWWNGTPFDAVTAILSLGAAAAS 899 (1289)
T ss_dssp C-CEEEET--TT-CHHHCS-TTSEEEEEESS--SSSCCCCSTTEEEEES-T---TSCCGGCC---SEEEECTCHHHHHHH
T ss_pred cceEEEccCCccceeeeccCCCCceEEEecCCcccccchhhhcceeeeecc---ccceeEecCCCCEEEEEeeehhhhhc
Confidence 679999999955 55566666789999998765322211 2378999998 3322 345679999999888764
Q ss_pred --CCHHHHHHHHHhhcccCc--EEEEEecCcc
Q 021661 222 --TKPIEVFKEMCQVLKPGG--LAIVSFSNRC 249 (309)
Q Consensus 222 --~d~~~~l~~i~rvLkpGG--~lii~~~~~~ 249 (309)
-+..+.++++.+.+++.| ++++.+..+.
T Consensus 900 a~~tl~~~l~~~l~~~~~~~~~~l~lQLNcPl 931 (1289)
T PF06016_consen 900 ANVTLDAGLQQFLSQCVQANVKRLWLQLNCPL 931 (1289)
T ss_dssp CT--HHHHHHHHHHHHHCTT-SEEEEE-B--S
T ss_pred CCCcHHHHHHHHHHHHHhCCccEEEEEecCCC
Confidence 367899999999999988 7888876543
No 283
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=89.77 E-value=0.41 Score=47.50 Aligned_cols=96 Identities=13% Similarity=0.166 Sum_probs=63.4
Q ss_pred CCCCeEEEECCC-cchhc--cCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCC--------CC------------C
Q 021661 147 TPGVSILDLCSS-WVSHF--PPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLN--------PK------------L 202 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~~--~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~--------~~------------l 202 (309)
.++.++|=+|+| .|... .....+..|+++|.+++-++.++.. .+++..|.... .. +
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~ 241 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELF 241 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHH
Confidence 357899999999 33322 1122356899999999988887764 34444443100 00 1
Q ss_pred CCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEE
Q 021661 203 PFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAI 242 (309)
Q Consensus 203 p~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~li 242 (309)
+-.-..+|+|+.+-.+.--+.|.-+.+++.+.+|||+.++
T Consensus 242 ~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 242 AAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 1112459999888767666667778899999999998754
No 284
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=89.46 E-value=0.88 Score=35.84 Aligned_cols=85 Identities=16% Similarity=0.267 Sum_probs=53.0
Q ss_pred CCeEEEECCCcchhc--cCCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCCCCCceeEEEeccchhccCCHHH
Q 021661 149 GVSILDLCSSWVSHF--PPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIE 226 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~--~~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~~~ 226 (309)
..+|.|||-|.-... .....+..|+++|+++. .+++-++++.-|++. .++..- ..-|+|.|. .-|.+
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~---~a~~g~~~v~DDitn-P~~~iY-~~A~lIYSi------RpppE 82 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK---TAPEGLRFVVDDITN-PNISIY-EGADLIYSI------RPPPE 82 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcCCcEEEEecccc---cCcccceEEEccCCC-ccHHHh-hCccceeec------CCCHH
Confidence 459999999943221 22234689999999998 677779999999943 233322 236888773 23445
Q ss_pred HHHHHHhhcccCc-EEEEE
Q 021661 227 VFKEMCQVLKPGG-LAIVS 244 (309)
Q Consensus 227 ~l~~i~rvLkpGG-~lii~ 244 (309)
....+.++-+.=| -++|.
T Consensus 83 l~~~ildva~aVga~l~I~ 101 (129)
T COG1255 83 LQSAILDVAKAVGAPLYIK 101 (129)
T ss_pred HHHHHHHHHHhhCCCEEEE
Confidence 5555555555434 44443
No 285
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=89.32 E-value=0.99 Score=42.64 Aligned_cols=90 Identities=16% Similarity=0.220 Sum_probs=59.7
Q ss_pred CCeEEEECCC-cchh---ccCCCCCCeEEEEeCCHHHHhhCCCC--CcEEEecCCCCCC------CCCCC-CceeEEEec
Q 021661 149 GVSILDLCSS-WVSH---FPPGYKQDRIVGMGMNEEELKRNPVL--TEYVVQDLNLNPK------LPFED-NSFDVITNV 215 (309)
Q Consensus 149 ~~~ILDiGcG-~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~--i~~~~~D~~~~~~------lp~~~-~sfDlVis~ 215 (309)
+.+|+=+||| .|.. +.......+|+.+|.+++-++.|++. .+.+.... .+ +.... ..+|+|+=.
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~---~~~~~~~~~~~t~g~g~D~vie~ 245 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPS---EDDAGAEILELTGGRGADVVIEA 245 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCc---cccHHHHHHHHhCCCCCCEEEEC
Confidence 4489999999 4432 33445567999999999999999873 22222221 11 01112 369999865
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEE-EEEecC
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLA-IVSFSN 247 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~l-ii~~~~ 247 (309)
.. ...++.++.++++|||.+ ++.+..
T Consensus 246 ~G------~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 246 VG------SPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred CC------CHHHHHHHHHHhcCCCEEEEEeccC
Confidence 54 235899999999999965 555554
No 286
>PRK10742 putative methyltransferase; Provisional
Probab=89.09 E-value=0.33 Score=43.55 Aligned_cols=68 Identities=10% Similarity=-0.091 Sum_probs=44.5
Q ss_pred eEEEECCCcch-hccCCCCCCeEEEEeCCHHHHh-------hCC----------CCCcEEEecCCCCCCCCCCCCceeEE
Q 021661 151 SILDLCSSWVS-HFPPGYKQDRIVGMGMNEEELK-------RNP----------VLTEYVVQDLNLNPKLPFEDNSFDVI 212 (309)
Q Consensus 151 ~ILDiGcG~g~-~~~~~~~~~~v~giD~S~~~l~-------~a~----------~~i~~~~~D~~~~~~lp~~~~sfDlV 212 (309)
+|||+-+|+|. .+..+..+++|+++|-|+.+.. .+. ++++++.+|.. .-|.-..++||+|
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~--~~L~~~~~~fDVV 168 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL--TALTDITPRPQVV 168 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHH--HHHhhCCCCCcEE
Confidence 89999999884 3444445788999999986543 221 23666677762 2222223479999
Q ss_pred Eeccchhc
Q 021661 213 TNVVSVDY 220 (309)
Q Consensus 213 is~~vl~~ 220 (309)
+.--.+.|
T Consensus 169 YlDPMfp~ 176 (250)
T PRK10742 169 YLDPMFPH 176 (250)
T ss_pred EECCCCCC
Confidence 97666555
No 287
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=88.49 E-value=0.88 Score=42.48 Aligned_cols=90 Identities=12% Similarity=0.087 Sum_probs=54.2
Q ss_pred CCCCeEEEECCC-cchh---ccCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCC--CCCCCCCCceeEEEeccchh
Q 021661 147 TPGVSILDLCSS-WVSH---FPPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLN--PKLPFEDNSFDVITNVVSVD 219 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~--~~lp~~~~sfDlVis~~vl~ 219 (309)
.++.+||=.||| .|.. +.......+|+++|.+++-++.+++. .+. ..|.... ..+....+.+|+|+-...
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~-vi~~~~~~~~~~~~~~g~~D~vid~~G-- 244 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADK-LVNPQNDDLDHYKAEKGYFDVSFEVSG-- 244 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcE-EecCCcccHHHHhccCCCCCEEEECCC--
Confidence 357899989997 3322 22333223799999999998888764 222 1222100 111111235898876543
Q ss_pred ccCCHHHHHHHHHhhcccCcEEEE
Q 021661 220 YLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 220 ~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
. ...+..+.+.|++||.+++
T Consensus 245 ---~-~~~~~~~~~~l~~~G~iv~ 264 (343)
T PRK09880 245 ---H-PSSINTCLEVTRAKGVMVQ 264 (343)
T ss_pred ---C-HHHHHHHHHHhhcCCEEEE
Confidence 1 3467888899999997654
No 288
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=87.43 E-value=1.2 Score=39.29 Aligned_cols=91 Identities=18% Similarity=0.042 Sum_probs=56.2
Q ss_pred CCeEEEECCCcc---hhccCCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEecc
Q 021661 149 GVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVV 216 (309)
Q Consensus 149 ~~~ILDiGcG~g---~~~~~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis~~ 216 (309)
+.++.||||--+ ..+....+...+++.|+++.-++.|.++ ++..++|.. ..+. .++.+|+|+...
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl--~~l~-~~d~~d~ivIAG 93 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGL--AVLE-LEDEIDVIVIAG 93 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCc--cccC-ccCCcCEEEEeC
Confidence 667999999644 4556666778999999999988877653 444555541 2222 233699988765
Q ss_pred chhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 217 SVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 217 vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
+=-. -...+|++-...|+.=-.+++.
T Consensus 94 MGG~--lI~~ILee~~~~l~~~~rlILQ 119 (226)
T COG2384 94 MGGT--LIREILEEGKEKLKGVERLILQ 119 (226)
T ss_pred CcHH--HHHHHHHHhhhhhcCcceEEEC
Confidence 3221 1345555555555533345553
No 289
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=87.25 E-value=1.5 Score=39.10 Aligned_cols=98 Identities=22% Similarity=0.137 Sum_probs=54.7
Q ss_pred CCCeEEEECCC--cchhccCCCCCCeEEEEeCCHHHHhhCCC-------CCcEEEecCCCCCCCCCC-CCceeEEEeccc
Q 021661 148 PGVSILDLCSS--WVSHFPPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFE-DNSFDVITNVVS 217 (309)
Q Consensus 148 ~~~~ILDiGcG--~g~~~~~~~~~~~v~giD~S~~~l~~a~~-------~i~~~~~D~~~~~~lp~~-~~sfDlVis~~v 217 (309)
.+.+||=||=. +...+.......+|+.+|+.+++++.-++ .++.++.|+. ..+|-+ .++||++++.-.
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR--~~LP~~~~~~fD~f~TDPP 121 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLR--DPLPEELRGKFDVFFTDPP 121 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TT--S---TTTSS-BSEEEE---
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEeccc--ccCCHHHhcCCCEEEeCCC
Confidence 48899999986 33333444556799999999999975332 2788899984 345522 478999998531
Q ss_pred hhccCCHHHHHHHHHhhcccCc-EEEEEecCc
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGG-LAIVSFSNR 248 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG-~lii~~~~~ 248 (309)
.-+.-..-++......||..| ..++.+...
T Consensus 122 -yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~ 152 (243)
T PF01861_consen 122 -YTPEGLKLFLSRGIEALKGEGCAGYFGFTHK 152 (243)
T ss_dssp -SSHHHHHHHHHHHHHTB-STT-EEEEEE-TT
T ss_pred -CCHHHHHHHHHHHHHHhCCCCceEEEEEecC
Confidence 111233578888999999866 667776653
No 290
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=86.36 E-value=1.1 Score=43.68 Aligned_cols=97 Identities=13% Similarity=0.121 Sum_probs=57.9
Q ss_pred CCCCeEEEECCCcchhc---cCCCC--CCeEEEEeCCHHHHhhCCCC-------CcEEEec-CCCCCCCCCC-CCceeEE
Q 021661 147 TPGVSILDLCSSWVSHF---PPGYK--QDRIVGMGMNEEELKRNPVL-------TEYVVQD-LNLNPKLPFE-DNSFDVI 212 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~~--~~~v~giD~S~~~l~~a~~~-------i~~~~~D-~~~~~~lp~~-~~sfDlV 212 (309)
..+..++|+|.|.|... ....+ ...++.||.|..|+.....+ ...+... ......+|.+ .+.||+|
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeE
Confidence 44678999988755321 12222 34799999999998865432 1112222 1101234533 3459999
Q ss_pred EeccchhccCCHH---HHHHH-HHhhcccCcEEEE
Q 021661 213 TNVVSVDYLTKPI---EVFKE-MCQVLKPGGLAIV 243 (309)
Q Consensus 213 is~~vl~~l~d~~---~~l~~-i~rvLkpGG~lii 243 (309)
++.+.++++.+.. ...++ ..+..++||.+++
T Consensus 279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lVi 313 (491)
T KOG2539|consen 279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVI 313 (491)
T ss_pred EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEE
Confidence 9999999986542 33333 4456778886544
No 291
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=86.30 E-value=0.8 Score=40.60 Aligned_cols=93 Identities=17% Similarity=0.180 Sum_probs=56.0
Q ss_pred CCeEEEECCCcchh---cc-CC----CCC----CeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCC-----CCCCCceeE
Q 021661 149 GVSILDLCSSWVSH---FP-PG----YKQ----DRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKL-----PFEDNSFDV 211 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~-~~----~~~----~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~l-----p~~~~sfDl 211 (309)
-.+++|+|+-.|+. +. .. ... ..|+++|+-+-.-- +-+--+++|+.....+ -|..+.-|+
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI---~GV~qlq~DIT~~stae~Ii~hfggekAdl 118 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI---EGVIQLQGDITSASTAEAIIEHFGGEKADL 118 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc---CceEEeecccCCHhHHHHHHHHhCCCCccE
Confidence 35899998854422 11 11 111 24999999643111 1256678888322111 145568899
Q ss_pred EEecc-----chhccCCH------HHHHHHHHhhcccCcEEEEE
Q 021661 212 ITNVV-----SVDYLTKP------IEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 212 Vis~~-----vl~~l~d~------~~~l~~i~rvLkpGG~lii~ 244 (309)
|+|-. .+|.+.+. ..+|.-...+|||||.++--
T Consensus 119 VvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 119 VVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred EEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 99964 45555432 35677788999999988754
No 292
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=86.06 E-value=1.7 Score=42.61 Aligned_cols=98 Identities=18% Similarity=0.156 Sum_probs=64.9
Q ss_pred CCeEEEECCCcc---hhccCCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCC---CCCCC---------CCCCceeEEE
Q 021661 149 GVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNL---NPKLP---------FEDNSFDVIT 213 (309)
Q Consensus 149 ~~~ILDiGcG~g---~~~~~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~---~~~lp---------~~~~sfDlVi 213 (309)
+.++|=+|=|.| ..+....+...++++++.+.|++.|++...|.+.|.+. ...++ -++..||++.
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~ 375 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLM 375 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEEE
Confidence 445555544433 45555677889999999999999999886666655210 01111 2456799988
Q ss_pred e----ccchhccCCH------HHHHHHHHhhcccCcEEEEEecC
Q 021661 214 N----VVSVDYLTKP------IEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 214 s----~~vl~~l~d~------~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
. .. .+-+.-| ..+|..+..+|.|-|.++|-...
T Consensus 376 ~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~ 418 (482)
T KOG2352|consen 376 VDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVT 418 (482)
T ss_pred EECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEec
Confidence 4 23 3333222 57889999999999999887543
No 293
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=85.38 E-value=1 Score=41.71 Aligned_cols=92 Identities=14% Similarity=0.127 Sum_probs=64.4
Q ss_pred CCCeEEEECCCc-chhc--cCCCCCCeEEEEeCCHHHHhhCCCC----CcEEEecCCCCCCCCCCCCceeEEEeccchhc
Q 021661 148 PGVSILDLCSSW-VSHF--PPGYKQDRIVGMGMNEEELKRNPVL----TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 220 (309)
Q Consensus 148 ~~~~ILDiGcG~-g~~~--~~~~~~~~v~giD~S~~~l~~a~~~----i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~ 220 (309)
++.+|.=||.|. |... ....-+++|+-+|+|..-|++.... ++..-.+. .++...-.+.|+||..-.+--
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~---~~iee~v~~aDlvIgaVLIpg 243 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTP---SNIEEAVKKADLVIGAVLIPG 243 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCH---HHHHHHhhhccEEEEEEEecC
Confidence 346777888883 3222 2233478999999998887765542 44444444 344333356899999887777
Q ss_pred cCCHHHHHHHHHhhcccCcEEE
Q 021661 221 LTKPIEVFKEMCQVLKPGGLAI 242 (309)
Q Consensus 221 l~d~~~~l~~i~rvLkpGG~li 242 (309)
-..|.-+.+++.+.||||..++
T Consensus 244 akaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 244 AKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred CCCceehhHHHHHhcCCCcEEE
Confidence 7889999999999999999653
No 294
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=85.33 E-value=1.3 Score=35.56 Aligned_cols=96 Identities=15% Similarity=0.195 Sum_probs=46.6
Q ss_pred HHHHHHhhCCCCCCCCCeEEEECCCcchh--ccCCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCCCCCceeE
Q 021661 134 LTKYYSEVFPPSNTPGVSILDLCSSWVSH--FPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDV 211 (309)
Q Consensus 134 l~~~~~~~l~~~~~~~~~ILDiGcG~g~~--~~~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~~~sfDl 211 (309)
+++++.+... ..+|+|||-|.-.. ..+...+..|+++|+.+. .++..+.++.-|+.. .++.+ -...|+
T Consensus 4 ~a~~ia~~~~-----~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~---~a~~g~~~v~DDif~-P~l~i-Y~~a~l 73 (127)
T PF03686_consen 4 FAEYIARLNN-----YGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR---KAPEGVNFVVDDIFN-PNLEI-YEGADL 73 (127)
T ss_dssp HHHHHHHHS------SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S-------STTEE---SSS---HHH-HTTEEE
T ss_pred HHHHHHHhCC-----CCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc---ccccCcceeeecccC-CCHHH-hcCCcE
Confidence 3455554443 45999999994422 222223579999999998 455569999999942 12221 135799
Q ss_pred EEeccchhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 212 ITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 212 Vis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
|.|.- --++....+-++.+.+ |.-++|.
T Consensus 74 IYSiR---PP~El~~~il~lA~~v--~adlii~ 101 (127)
T PF03686_consen 74 IYSIR---PPPELQPPILELAKKV--GADLIIR 101 (127)
T ss_dssp EEEES-----TTSHHHHHHHHHHH--T-EEEEE
T ss_pred EEEeC---CChHHhHHHHHHHHHh--CCCEEEE
Confidence 98843 2334455555555543 3445554
No 295
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=85.19 E-value=7.6 Score=35.14 Aligned_cols=97 Identities=13% Similarity=0.137 Sum_probs=62.6
Q ss_pred CCeEEEECCCcchh-ccCCC-CCCeEEEEeCCHHHHh-------h----CCCCCcEEEecCCCCCCC-------CCCCCc
Q 021661 149 GVSILDLCSSWVSH-FPPGY-KQDRIVGMGMNEEELK-------R----NPVLTEYVVQDLNLNPKL-------PFEDNS 208 (309)
Q Consensus 149 ~~~ILDiGcG~g~~-~~~~~-~~~~v~giD~S~~~l~-------~----a~~~i~~~~~D~~~~~~l-------p~~~~s 208 (309)
...|+.+|||.-.. +.... ++.+++=+|.-+ +++ . ...+.+++..|+. ..+ .+..+.
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~-v~~~K~~~l~~~~~~~~~~~~~v~~Dl~--~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPA-VLAFKEKVLAELGAEPPAHRRAVPVDLR--QDWPAALAAAGFDPTA 158 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCCCCeEEECCChH-HHHHHHHHHHHcCCCCCCceEEeccCch--hhHHHHHHhCCCCCCC
Confidence 34799999995432 22222 246777777754 332 1 1224677888873 111 122333
Q ss_pred eeEEEeccchhccCC--HHHHHHHHHhhcccCcEEEEEecCc
Q 021661 209 FDVITNVVSVDYLTK--PIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 209 fDlVis~~vl~~l~d--~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
--++++-.++.+++. ..++|+.+.+...||+.++++..++
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 457888889999964 4689999999888999999997654
No 296
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=84.85 E-value=0.56 Score=44.90 Aligned_cols=93 Identities=22% Similarity=0.208 Sum_probs=57.7
Q ss_pred CCeEEEECCCcc----hhccCCCCCCeEEEEeCCHHHHhhCCCC----------CcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 149 GVSILDLCSSWV----SHFPPGYKQDRIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 149 ~~~ILDiGcG~g----~~~~~~~~~~~v~giD~S~~~l~~a~~~----------i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
+.+|||.=+|+| +.........+|+.-|+|+++++..++| ++....|++. -+....+.||+|=.
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~--ll~~~~~~fD~IDl 127 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANV--LLYSRQERFDVIDL 127 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHH--HHCHSTT-EEEEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHH--HhhhccccCCEEEe
Confidence 569999955444 2222223346899999999998876554 4566677731 12124567999864
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+-.-.|..+|..+.+.+|.||+|.++-..
T Consensus 128 ----DPfGSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 128 ----DPFGSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp ------SS--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred ----CCCCCccHhHHHHHHHhhcCCEEEEeccc
Confidence 34456789999999999999999998554
No 297
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=84.05 E-value=0.28 Score=43.63 Aligned_cols=69 Identities=19% Similarity=0.079 Sum_probs=36.2
Q ss_pred CeEEEECCCcch-hccCCCCCCeEEEEeCCHHHHhh-------CC----------CCCcEEEecCCCCCCCCCCCCceeE
Q 021661 150 VSILDLCSSWVS-HFPPGYKQDRIVGMGMNEEELKR-------NP----------VLTEYVVQDLNLNPKLPFEDNSFDV 211 (309)
Q Consensus 150 ~~ILDiGcG~g~-~~~~~~~~~~v~giD~S~~~l~~-------a~----------~~i~~~~~D~~~~~~lp~~~~sfDl 211 (309)
.+|||.-+|.|. .+..+.-+++|++++-|+-+-.. +. ++++++.+|.. +-|+.++++||+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~--~~L~~~~~s~DV 154 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDAL--EYLRQPDNSFDV 154 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CC--CHCCCHSS--SE
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHH--HHHhhcCCCCCE
Confidence 499999999883 22222337799999999865321 11 13789999983 335666789999
Q ss_pred EEeccchhc
Q 021661 212 ITNVVSVDY 220 (309)
Q Consensus 212 Vis~~vl~~ 220 (309)
|+.--++.+
T Consensus 155 VY~DPMFp~ 163 (234)
T PF04445_consen 155 VYFDPMFPE 163 (234)
T ss_dssp EEE--S---
T ss_pred EEECCCCCC
Confidence 998777665
No 298
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=83.71 E-value=1.1 Score=34.99 Aligned_cols=32 Identities=9% Similarity=-0.162 Sum_probs=21.8
Q ss_pred CCCCeEEEECCCcchhc-cCCCCCCeEEEEeCC
Q 021661 147 TPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMN 178 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S 178 (309)
.+....+|||||.|... .+...+..-.|+|.-
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R 89 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSEGYPGWGIDAR 89 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhCCCCccccccc
Confidence 34678999999999543 233345566788764
No 299
>PHA01634 hypothetical protein
Probab=83.55 E-value=2.6 Score=34.05 Aligned_cols=68 Identities=13% Similarity=-0.003 Sum_probs=41.9
Q ss_pred CCCCeEEEECCCcchh--ccCCCCCCeEEEEeCCHHHHhhCCCCCcE-EEecC-CCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSH--FPPGYKQDRIVGMGMNEEELKRNPVLTEY-VVQDL-NLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~--~~~~~~~~~v~giD~S~~~l~~a~~~i~~-~~~D~-~~~~~lp~~~~sfDlVis 214 (309)
-.+.+|+|||++.|.. +........|+++++++...+..++++.+ ...|- ......+-.-+.||+.+.
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~~Y~~~Di~~i 98 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNGEYEDVDIFVM 98 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeecccccccCCCcceEEE
Confidence 3478999999987733 33334445899999999999888776332 22221 000223334456887764
No 300
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=82.26 E-value=2.4 Score=39.00 Aligned_cols=36 Identities=31% Similarity=0.410 Sum_probs=27.0
Q ss_pred CceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 207 NSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 207 ~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+-||+|+.+...-|+-.|. +.++++|+|.|++++..
T Consensus 221 ~~Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~LvvEtaK 256 (289)
T PF14740_consen 221 NFFDLIFVSCSMVHFLKPE-----LFQALAPDAVLVVETAK 256 (289)
T ss_pred CCCCEEEEhhhhHhhcchH-----HHHHhCCCCEEEEEcch
Confidence 5699999776544443433 77899999999999874
No 301
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=81.72 E-value=1.9 Score=40.80 Aligned_cols=92 Identities=20% Similarity=0.201 Sum_probs=60.6
Q ss_pred CCeEEEECCCcch-h--ccCCCCCCeEEEEeCCHHHHhhCCCCC--------cEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 149 GVSILDLCSSWVS-H--FPPGYKQDRIVGMGMNEEELKRNPVLT--------EYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 149 ~~~ILDiGcG~g~-~--~~~~~~~~~v~giD~S~~~l~~a~~~i--------~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
..+|||.=+|+|. . +....+..+|+.-|+|+++.+..++|+ ..+..|++. -+--....||+|=
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~--lm~~~~~~fd~ID---- 126 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANA--LLHELHRAFDVID---- 126 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHH--HHHhcCCCccEEe----
Confidence 5699999777662 2 222233448999999999999877652 233344421 1111124566663
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
|+-+-.|..++..+.+.+|.||++.++-.
T Consensus 127 iDPFGSPaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 127 IDPFGSPAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred cCCCCCCchHHHHHHHHhhcCCEEEEEec
Confidence 23345678999999999999999999844
No 302
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=81.53 E-value=5.2 Score=36.60 Aligned_cols=90 Identities=22% Similarity=0.324 Sum_probs=55.6
Q ss_pred CCCCeEEEECCC-cchhc--cCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCC-----CCCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSS-WVSHF--PPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKL-----PFEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~~--~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~l-----p~~~~sfDlVis~~v 217 (309)
.++.+||..|+| .|... .....+.+|++++.+++..+.+++. ++.+..+-. ... ....+.+|+|+.+..
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~D~vid~~g 241 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGADEVLNSLD--DSPKDKKAAGLGGGFDVIFDFVG 241 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCCC--cCHHHHHHHhcCCCceEEEECCC
Confidence 457899998887 34322 1122366899999999988876542 222222210 111 123456999886532
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
. ...++++.+.|+++|.++..
T Consensus 242 ~------~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 242 T------QPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred C------HHHHHHHHHHhhcCCEEEEE
Confidence 1 35788899999999977653
No 303
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=80.76 E-value=4.4 Score=37.36 Aligned_cols=97 Identities=16% Similarity=0.095 Sum_probs=62.9
Q ss_pred CCCCeEEEECCCcchhccCC---CCCCeEEEEeCCHHHHhhCCC------------CCcEEEecCCCCCCCC-CCCCcee
Q 021661 147 TPGVSILDLCSSWVSHFPPG---YKQDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPKLP-FEDNSFD 210 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~---~~~~~v~giD~S~~~l~~a~~------------~i~~~~~D~~~~~~lp-~~~~sfD 210 (309)
..+.++|=||.|-|..+... ....+++-+|+....++..++ ++....+|... -+. ...+.||
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~--fl~~~~~~~~d 197 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFL--FLEDLKENPFD 197 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHH--HHHHhccCCce
Confidence 34689999999855443322 223478999999888876554 26667777631 122 2368899
Q ss_pred EEEeccc---hhccC-CHHHHHHHHHhhcccCcEEEEEe
Q 021661 211 VITNVVS---VDYLT-KPIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 211 lVis~~v---l~~l~-d~~~~l~~i~rvLkpGG~lii~~ 245 (309)
+|+.-.. ..... -.+.++..+.+.||+||.+++.-
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 9986421 11100 12578888999999999887754
No 304
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=80.62 E-value=1.4 Score=40.18 Aligned_cols=63 Identities=10% Similarity=0.083 Sum_probs=41.3
Q ss_pred eEEEECCCcchh--ccCCCCCCeEEEEeCCHHHHhhCCCC--CcEEEecCCCCCCCCCC--CCceeEEEecc
Q 021661 151 SILDLCSSWVSH--FPPGYKQDRIVGMGMNEEELKRNPVL--TEYVVQDLNLNPKLPFE--DNSFDVITNVV 216 (309)
Q Consensus 151 ~ILDiGcG~g~~--~~~~~~~~~v~giD~S~~~l~~a~~~--i~~~~~D~~~~~~lp~~--~~sfDlVis~~ 216 (309)
+++|+-||.|.. -........+.++|+++.+++..+.+ ...+.+|+ .++... ...+|+|+...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di---~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNKLIEGDI---TKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCCCccCcc---ccCchhhcCCCCCEEEeCC
Confidence 689998875532 12222234688999999999876665 23567888 454322 35699999653
No 305
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=80.60 E-value=1.4 Score=40.98 Aligned_cols=65 Identities=18% Similarity=0.205 Sum_probs=38.8
Q ss_pred CCCCeEEEECCCcc---hhccCCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCC-----C-CCCcee
Q 021661 147 TPGVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLP-----F-EDNSFD 210 (309)
Q Consensus 147 ~~~~~ILDiGcG~g---~~~~~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp-----~-~~~sfD 210 (309)
.++..++|.=-|.| ..++...+.++++|+|-.+.+++.++++ +.++..+. .++. . ..+++|
T Consensus 19 ~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F---~~l~~~l~~~~~~~~~d 95 (310)
T PF01795_consen 19 KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNF---SNLDEYLKELNGINKVD 95 (310)
T ss_dssp -TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-G---GGHHHHHHHTTTTS-EE
T ss_pred CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccH---HHHHHHHHHccCCCccC
Confidence 45789999844433 3344455669999999999999877643 56777776 4432 2 334688
Q ss_pred EEEe
Q 021661 211 VITN 214 (309)
Q Consensus 211 lVis 214 (309)
.|+.
T Consensus 96 giL~ 99 (310)
T PF01795_consen 96 GILF 99 (310)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8884
No 306
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=80.20 E-value=1.8 Score=44.56 Aligned_cols=51 Identities=18% Similarity=0.153 Sum_probs=31.9
Q ss_pred cEEEecCCCCCCCCCCCCceeEEEecc-chhccCCH--HHHHHHHHhhcccCcEEE
Q 021661 190 EYVVQDLNLNPKLPFEDNSFDVITNVV-SVDYLTKP--IEVFKEMCQVLKPGGLAI 242 (309)
Q Consensus 190 ~~~~~D~~~~~~lp~~~~sfDlVis~~-vl~~l~d~--~~~l~~i~rvLkpGG~li 242 (309)
++..+|+. +.++--...||+++.-. +=..-++. ..+|++|.|+++|||.++
T Consensus 150 ~l~~gd~~--~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 150 DLWFGDAN--ELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred EEEecCHH--HHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE
Confidence 45666762 22332224589988643 22222222 689999999999999876
No 307
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=78.97 E-value=5.6 Score=37.11 Aligned_cols=88 Identities=16% Similarity=0.165 Sum_probs=53.3
Q ss_pred CCCCeEEEECCC-cchhc---cCC-CCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCCCCCceeEEEeccchhcc
Q 021661 147 TPGVSILDLCSS-WVSHF---PPG-YKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYL 221 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~~---~~~-~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l 221 (309)
.++.+||=+||| .|... ... ....+|+++|.+++-++.+++...... . ..+. .+..+|+|+-...-
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~--~---~~~~-~~~g~d~viD~~G~--- 232 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYL--I---DDIP-EDLAVDHAFECVGG--- 232 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceee--h---hhhh-hccCCcEEEECCCC---
Confidence 458899999998 44332 222 335689999999988887764211111 1 1111 11248888854321
Q ss_pred CCHHHHHHHHHhhcccCcEEEE
Q 021661 222 TKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 222 ~d~~~~l~~i~rvLkpGG~lii 243 (309)
......+.+..++|++||.+++
T Consensus 233 ~~~~~~~~~~~~~l~~~G~iv~ 254 (341)
T cd08237 233 RGSQSAINQIIDYIRPQGTIGL 254 (341)
T ss_pred CccHHHHHHHHHhCcCCcEEEE
Confidence 0124678889999999997654
No 308
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=77.27 E-value=8 Score=35.88 Aligned_cols=85 Identities=11% Similarity=-0.014 Sum_probs=52.9
Q ss_pred CCCCeEEEECCC-cchhc--cCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCCCCCCCceeEEEeccchhccC
Q 021661 147 TPGVSILDLCSS-WVSHF--PPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT 222 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~~--~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~ 222 (309)
.++.+||=.|+| .|... .....+.+|+++|.+++-++.+++. .+. ..|. ... ..+.+|+++-....
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~-vi~~---~~~--~~~~~d~~i~~~~~---- 233 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAAS-AGGA---YDT--PPEPLDAAILFAPA---- 233 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCce-eccc---ccc--CcccceEEEECCCc----
Confidence 558899999987 33221 1112356899999999888887764 222 2222 111 12358876543321
Q ss_pred CHHHHHHHHHhhcccCcEEEE
Q 021661 223 KPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 223 d~~~~l~~i~rvLkpGG~lii 243 (309)
...+....+.|++||.+++
T Consensus 234 --~~~~~~~~~~l~~~G~~v~ 252 (329)
T TIGR02822 234 --GGLVPPALEALDRGGVLAV 252 (329)
T ss_pred --HHHHHHHHHhhCCCcEEEE
Confidence 2478889999999997755
No 309
>PRK11524 putative methyltransferase; Provisional
Probab=76.21 E-value=1.5 Score=40.17 Aligned_cols=43 Identities=19% Similarity=0.206 Sum_probs=33.9
Q ss_pred CCCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCCCC
Q 021661 147 TPGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPVLT 189 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~~i 189 (309)
.++..|||-=||+|++... ..-+.+.+|+|++++..+.|++++
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl 250 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRL 250 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHH
Confidence 4589999998887765433 334679999999999999888764
No 310
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=75.34 E-value=9.2 Score=35.06 Aligned_cols=82 Identities=11% Similarity=0.015 Sum_probs=51.1
Q ss_pred CCCeEEEECCC-cchh---ccCCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCCCCCceeEEEeccchhccCC
Q 021661 148 PGVSILDLCSS-WVSH---FPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK 223 (309)
Q Consensus 148 ~~~~ILDiGcG-~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d 223 (309)
++.++|=+||| .|.. ++.......|+++|.+++.++.+... ...|. ... ....+|+|+-+..-
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~---~~i~~---~~~--~~~g~Dvvid~~G~----- 210 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY---EVLDP---EKD--PRRDYRAIYDASGD----- 210 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc---cccCh---hhc--cCCCCCEEEECCCC-----
Confidence 36788888998 4432 23333333577889999888877642 11232 111 23458988865431
Q ss_pred HHHHHHHHHhhcccCcEEEE
Q 021661 224 PIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 224 ~~~~l~~i~rvLkpGG~lii 243 (309)
...+.++.+.|++||.+++
T Consensus 211 -~~~~~~~~~~l~~~G~iv~ 229 (308)
T TIGR01202 211 -PSLIDTLVRRLAKGGEIVL 229 (308)
T ss_pred -HHHHHHHHHhhhcCcEEEE
Confidence 3467888899999997754
No 311
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=74.13 E-value=4.3 Score=38.92 Aligned_cols=54 Identities=17% Similarity=0.295 Sum_probs=42.8
Q ss_pred CcEEEecCCCCCCCC-CCCCceeEEEeccchhccCC--HHHHHHHHHhhcccCcEEEEE
Q 021661 189 TEYVVQDLNLNPKLP-FEDNSFDVITNVVSVDYLTK--PIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 189 i~~~~~D~~~~~~lp-~~~~sfDlVis~~vl~~l~d--~~~~l~~i~rvLkpGG~lii~ 244 (309)
+++..+++. +-+. .+++++|.++.....+|+++ ..+.+++|.+.++|||.+++-
T Consensus 277 v~i~t~si~--~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~R 333 (380)
T PF11899_consen 277 VRIHTDSIE--EVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWR 333 (380)
T ss_pred EEEEeccHH--HHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 667777762 2222 45789999999999999964 568999999999999988774
No 312
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.10 E-value=3.2 Score=34.41 Aligned_cols=74 Identities=16% Similarity=0.128 Sum_probs=46.5
Q ss_pred CCCCeEEEECCCcchhccCCCCC--CeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEec
Q 021661 147 TPGVSILDLCSSWVSHFPPGYKQ--DRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~~~~--~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis~ 215 (309)
.+..+.+|+|.|-|.....+... ..-+|+++++-.+..++- ...|..-|+ -+..+.+ |.-|+..
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~Rkdl---wK~dl~d--y~~vviF 145 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDL---WKVDLRD--YRNVVIF 145 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhh---hhccccc--cceEEEe
Confidence 45679999999988765544333 378999999987765432 266777777 4444333 4444444
Q ss_pred cchhccCCHH
Q 021661 216 VSVDYLTKPI 225 (309)
Q Consensus 216 ~vl~~l~d~~ 225 (309)
.+-.-++|.+
T Consensus 146 gaes~m~dLe 155 (199)
T KOG4058|consen 146 GAESVMPDLE 155 (199)
T ss_pred ehHHHHhhhH
Confidence 4444444544
No 313
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=72.96 E-value=14 Score=35.22 Aligned_cols=95 Identities=18% Similarity=0.154 Sum_probs=56.0
Q ss_pred CCCCeEEEECCCcch---hccCCCCCCeEEEEeCCHHHHhhCCCC----------CcEEEecCCCC--------------
Q 021661 147 TPGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKRNPVL----------TEYVVQDLNLN-------------- 199 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~---~~~~~~~~~~v~giD~S~~~l~~a~~~----------i~~~~~D~~~~-------------- 199 (309)
..+.+.||++|+.+. .+...++..+--|+++..+.+..+... .++..+|.-..
T Consensus 179 fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~ 258 (364)
T KOG1269|consen 179 FDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSF 258 (364)
T ss_pred cCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhc
Confidence 446899999998553 334444444555666666665543321 34444443111
Q ss_pred -----------CCC-CCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 200 -----------PKL-PFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 200 -----------~~l-p~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
... +++..++|. ..++.|+++-..++......++|+|.+.+.
T Consensus 259 ~~~~~~~~~dl~~~~s~~w~~~~~---~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~ 312 (364)
T KOG1269|consen 259 GFEHLKLEKDLALKSSFPWNTPLT---RDTITHWQDKSALFRGRVATLKPGGKVLIL 312 (364)
T ss_pred cchhhhhcccccCCCccccccccc---hhheeecccccHHHHhHhhccCcCceEEeh
Confidence 000 122344444 455666677778899999999999977664
No 314
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=72.73 E-value=4.6 Score=38.01 Aligned_cols=98 Identities=14% Similarity=0.151 Sum_probs=66.9
Q ss_pred CCCCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCCC-----------------CcEEEecCCCCCCCCC-CC
Q 021661 146 NTPGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPVL-----------------TEYVVQDLNLNPKLPF-ED 206 (309)
Q Consensus 146 ~~~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~~-----------------i~~~~~D~~~~~~lp~-~~ 206 (309)
..+|.-|.|-=-|+|+.+.. +.-++.|+|.||+-.|+...+.. +..+.+|. .+-|+ ..
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~---sn~~~rsn 282 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADF---SNPPLRSN 282 (421)
T ss_pred cCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecc---cCcchhhc
Confidence 36689999987777765543 44577999999999998843321 56788888 55554 34
Q ss_pred CceeEEEecc------------------------chhccCC---------HHHHHHHHHhhcccCcEEEEEec
Q 021661 207 NSFDVITNVV------------------------SVDYLTK---------PIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 207 ~sfDlVis~~------------------------vl~~l~d---------~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
..||.|+|-- .-.|.+. ....|.=.+++|.-||.+++=.|
T Consensus 283 ~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 283 LKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred ceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 5799999741 1122221 13566777899999998887554
No 315
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=71.69 E-value=1.2 Score=41.22 Aligned_cols=53 Identities=25% Similarity=0.392 Sum_probs=38.8
Q ss_pred CcEEEecCCCCCCCCCC-------CCceeEEEeccchhcc-----CCHHHHHHHHHhhcccCcEEEEE
Q 021661 189 TEYVVQDLNLNPKLPFE-------DNSFDVITNVVSVDYL-----TKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 189 i~~~~~D~~~~~~lp~~-------~~sfDlVis~~vl~~l-----~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
+.|.+.|+ -.+..+ ..+.|+|+..+.+..+ ..-.++|..+...++||-+|+|-
T Consensus 177 ~~F~~~Dv---L~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVv 241 (315)
T PF11312_consen 177 VSFTQQDV---LSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVV 241 (315)
T ss_pred eeEEeccc---ccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEE
Confidence 78899998 444321 1257889888887766 23468999999999999976554
No 316
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=71.46 E-value=7.7 Score=30.27 Aligned_cols=69 Identities=22% Similarity=0.338 Sum_probs=46.2
Q ss_pred CCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCC-----C-CCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEE
Q 021661 169 QDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKL-----P-FEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAI 242 (309)
Q Consensus 169 ~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~l-----p-~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~li 242 (309)
+.+|+++|.++.-++.+++.---...|... .++ . .....+|+|+-+.. -...++....+|+|+|.++
T Consensus 14 G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~-~~~~~~i~~~~~~~~~d~vid~~g------~~~~~~~~~~~l~~~G~~v 86 (130)
T PF00107_consen 14 GAKVIATDRSEEKLELAKELGADHVIDYSD-DDFVEQIRELTGGRGVDVVIDCVG------SGDTLQEAIKLLRPGGRIV 86 (130)
T ss_dssp TSEEEEEESSHHHHHHHHHTTESEEEETTT-SSHHHHHHHHTTTSSEEEEEESSS------SHHHHHHHHHHEEEEEEEE
T ss_pred CCEEEEEECCHHHHHHHHhhcccccccccc-cccccccccccccccceEEEEecC------cHHHHHHHHHHhccCCEEE
Confidence 489999999999888887752112233310 111 1 22347999986643 2478999999999999776
Q ss_pred EE
Q 021661 243 VS 244 (309)
Q Consensus 243 i~ 244 (309)
+-
T Consensus 87 ~v 88 (130)
T PF00107_consen 87 VV 88 (130)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 317
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=71.36 E-value=20 Score=35.59 Aligned_cols=98 Identities=12% Similarity=0.047 Sum_probs=58.5
Q ss_pred CCCeEEEECCCcchhccCC-----C--CCCeEEEEeCCHHHHhhCCCC--CcE--------EEecCCCCCCCCC-CCCce
Q 021661 148 PGVSILDLCSSWVSHFPPG-----Y--KQDRIVGMGMNEEELKRNPVL--TEY--------VVQDLNLNPKLPF-EDNSF 209 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~~-----~--~~~~v~giD~S~~~l~~a~~~--i~~--------~~~D~~~~~~lp~-~~~sf 209 (309)
++..+.|..||+|..+... . ....++|.+....|...++.+ ++. ..+|.- ....+ ....|
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl--~~~d~~~~~~~ 294 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTL--TTKEWENENGF 294 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcC--CCccccccccC
Confidence 4679999999988765321 1 124689999999988877654 111 122210 11111 23468
Q ss_pred eEEEeccch--------------------hc----cC-CHHHHHHHHHhhcccCcEEEEEecC
Q 021661 210 DVITNVVSV--------------------DY----LT-KPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 210 DlVis~~vl--------------------~~----l~-d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
|.|+++--+ .| .. .-..++..+..+|++||...+-.++
T Consensus 295 D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~~ 357 (501)
T TIGR00497 295 EVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCFP 357 (501)
T ss_pred CEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEecC
Confidence 888865311 11 11 1247888899999999976554443
No 318
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=70.70 E-value=7.9 Score=36.15 Aligned_cols=87 Identities=15% Similarity=0.064 Sum_probs=51.6
Q ss_pred CCCCeEEEECCC-cchh---ccCCCCCCeEEEEeC---CHHHHhhCCCC-CcEEEecCCCCCCC--CCCCCceeEEEecc
Q 021661 147 TPGVSILDLCSS-WVSH---FPPGYKQDRIVGMGM---NEEELKRNPVL-TEYVVQDLNLNPKL--PFEDNSFDVITNVV 216 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~---~~~~~~~~~v~giD~---S~~~l~~a~~~-i~~~~~D~~~~~~l--p~~~~sfDlVis~~ 216 (309)
.++.+||=+|+| .|.. ++.. .+.+|++++. ++.-++.+++. .+.+ |... ++. ....+.+|+|+-..
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~-~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v--~~~~-~~~~~~~~~~~~d~vid~~ 246 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRL-RGFEVYVLNRRDPPDPKADIVEELGATYV--NSSK-TPVAEVKLVGEFDLIIEAT 246 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHcCCEEe--cCCc-cchhhhhhcCCCCEEEECc
Confidence 347899999997 3322 2222 3558999986 66666666543 3332 3210 110 01124589888654
Q ss_pred chhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 217 SVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 217 vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
. . ...+.+..+.|++||.+++
T Consensus 247 g-----~-~~~~~~~~~~l~~~G~~v~ 267 (355)
T cd08230 247 G-----V-PPLAFEALPALAPNGVVIL 267 (355)
T ss_pred C-----C-HHHHHHHHHHccCCcEEEE
Confidence 3 1 2467889999999997654
No 319
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=70.48 E-value=18 Score=33.87 Aligned_cols=88 Identities=11% Similarity=0.110 Sum_probs=52.7
Q ss_pred CCCCeEEEECCC-cchh---ccCCCCCC-eEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCC-----C-CCCCceeEEEe
Q 021661 147 TPGVSILDLCSS-WVSH---FPPGYKQD-RIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKL-----P-FEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~---~~~~~~~~-~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~l-----p-~~~~sfDlVis 214 (309)
.++.+||=.|+| .|.. +.... +. +|+++|.+++-++.+++. .+. ..|... .+. . .....+|+|+-
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~-G~~~Vi~~~~~~~~~~~~~~~Ga~~-~i~~~~-~~~~~~i~~~~~~~g~d~vid 251 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALA-GASKIIAVDIDDRKLEWAREFGATH-TVNSSG-TDPVEAIRALTGGFGADVVID 251 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcCCce-EEcCCC-cCHHHHHHHHhCCCCCCEEEE
Confidence 458899999987 3322 22333 44 599999999888877653 211 112210 111 0 12235898875
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
... . ...+.+..+.|++||.+++
T Consensus 252 ~~g-----~-~~~~~~~~~~~~~~G~iv~ 274 (358)
T TIGR03451 252 AVG-----R-PETYKQAFYARDLAGTVVL 274 (358)
T ss_pred CCC-----C-HHHHHHHHHHhccCCEEEE
Confidence 432 2 2467778889999997764
No 320
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=69.64 E-value=13 Score=32.36 Aligned_cols=91 Identities=22% Similarity=0.240 Sum_probs=53.6
Q ss_pred CCCCeEEEECCCc-chhcc--CCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCC-----CCCCCceeEEEeccch
Q 021661 147 TPGVSILDLCSSW-VSHFP--PGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKL-----PFEDNSFDVITNVVSV 218 (309)
Q Consensus 147 ~~~~~ILDiGcG~-g~~~~--~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~l-----p~~~~sfDlVis~~vl 218 (309)
.++.+||..|+|. |.... ....+.+|++++.+++..+.+++...-...|... ... ....+.+|+|+.+..-
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~d~vi~~~~~ 211 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKE-EDLEEELRLTGGGGADVVIDAVGG 211 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCc-CCHHHHHHHhcCCCCCEEEECCCC
Confidence 4578999999984 42221 1223579999999988777654321111112200 011 0123569999865421
Q ss_pred hccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 219 DYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 219 ~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
...+..+.+.|+++|.++.-
T Consensus 212 ------~~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 212 ------PETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred ------HHHHHHHHHhcccCCEEEEE
Confidence 14677788899999977653
No 321
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=68.64 E-value=3.9 Score=35.17 Aligned_cols=40 Identities=20% Similarity=0.222 Sum_probs=27.4
Q ss_pred CCCCeEEEECCCcchhccCC-CCCCeEEEEeCCHHHHhhCC
Q 021661 147 TPGVSILDLCSSWVSHFPPG-YKQDRIVGMGMNEEELKRNP 186 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~-~~~~~v~giD~S~~~l~~a~ 186 (309)
.++..|||.=||+|+....+ .-+.+.+|+|+++...+.|+
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhc
Confidence 34899999988877554332 23568999999999988764
No 322
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=68.27 E-value=7.6 Score=36.33 Aligned_cols=91 Identities=13% Similarity=0.243 Sum_probs=52.6
Q ss_pred CCeEEEECCCcc--hh-ccCCCCCCeEEEEeCCHHHHhhCCCC---CcEEEecCCCCCCCC---CCCCceeEEEeccchh
Q 021661 149 GVSILDLCSSWV--SH-FPPGYKQDRIVGMGMNEEELKRNPVL---TEYVVQDLNLNPKLP---FEDNSFDVITNVVSVD 219 (309)
Q Consensus 149 ~~~ILDiGcG~g--~~-~~~~~~~~~v~giD~S~~~l~~a~~~---i~~~~~D~~~~~~lp---~~~~sfDlVis~~vl~ 219 (309)
..+++|+-||.| .. +..+ ...-+.++|+++..++.-+.+ ...+..|+ ..+. +....+|+|+...--+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~a-gf~~~~a~Eid~~a~~ty~~n~~~~~~~~~di---~~~~~~~~~~~~~DvligGpPCQ 78 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEA-GFEIVFANEIDPPAVATYKANFPHGDIILGDI---KELDGEALRKSDVDVLIGGPPCQ 78 (328)
T ss_pred CceEEeeccCCchHHHHHHhc-CCeEEEEEecCHHHHHHHHHhCCCCceeechH---hhcChhhccccCCCEEEeCCCCc
Confidence 568999966543 32 2232 245688999999998865543 45667777 3322 2222689999653222
Q ss_pred c---------cCCHH----HHHHHHHhhcccCcEEEEE
Q 021661 220 Y---------LTKPI----EVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 220 ~---------l~d~~----~~l~~i~rvLkpGG~lii~ 244 (309)
. ..|+. --+.++...++| -.++++
T Consensus 79 ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~E 115 (328)
T COG0270 79 DFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLE 115 (328)
T ss_pred chhhcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEe
Confidence 2 23333 334555566667 455555
No 323
>PRK13699 putative methylase; Provisional
Probab=67.99 E-value=2.6 Score=37.33 Aligned_cols=42 Identities=17% Similarity=0.171 Sum_probs=32.4
Q ss_pred CCCCeEEEECCCcchhccCC-CCCCeEEEEeCCHHHHhhCCCC
Q 021661 147 TPGVSILDLCSSWVSHFPPG-YKQDRIVGMGMNEEELKRNPVL 188 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~-~~~~~v~giD~S~~~l~~a~~~ 188 (309)
.++..|||-=||+|+....+ .-+.+.+|+|++++..+.+.++
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r 204 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQR 204 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHH
Confidence 35889999988888655433 3466899999999998887664
No 324
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=66.05 E-value=9 Score=34.26 Aligned_cols=36 Identities=14% Similarity=0.043 Sum_probs=23.8
Q ss_pred CCeEEEECCCcchhc-------cCC----CCCCeEEEEeCCHHHHhh
Q 021661 149 GVSILDLCSSWVSHF-------PPG----YKQDRIVGMGMNEEELKR 184 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~-------~~~----~~~~~v~giD~S~~~l~~ 184 (309)
+.+|+|+|+|.|... ... +...+++-+|+|+.+.+.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~ 65 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRER 65 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHH
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHH
Confidence 479999999988432 122 134699999999987754
No 325
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=63.44 E-value=25 Score=32.31 Aligned_cols=88 Identities=15% Similarity=0.237 Sum_probs=52.2
Q ss_pred CCCeEEEECCCc-chhc---cCCCCCC-eEEEEeCCHHHHhhCCCC-CcEEEecCCCC--CCCCCCCCceeEEEeccchh
Q 021661 148 PGVSILDLCSSW-VSHF---PPGYKQD-RIVGMGMNEEELKRNPVL-TEYVVQDLNLN--PKLPFEDNSFDVITNVVSVD 219 (309)
Q Consensus 148 ~~~~ILDiGcG~-g~~~---~~~~~~~-~v~giD~S~~~l~~a~~~-i~~~~~D~~~~--~~lp~~~~sfDlVis~~vl~ 219 (309)
++.+||-.|||. |..+ ... .+. ++++++.+++..+.+++. .+. ..|.... ..+....+.+|+|+.....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~-~G~~~v~~~~~s~~~~~~~~~~g~~~-vi~~~~~~~~~~~~~~~~vd~vld~~g~- 241 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARR-AGAAEIVATDLADAPLAVARAMGADE-TVNLARDPLAAYAADKGDFDVVFEASGA- 241 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-cCCcEEEEECCCHHHHHHHHHcCCCE-EEcCCchhhhhhhccCCCccEEEECCCC-
Confidence 578999998873 3322 222 345 799999998877765432 111 1222100 1122122358999875432
Q ss_pred ccCCHHHHHHHHHhhcccCcEEEE
Q 021661 220 YLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 220 ~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
...++++.+.|+++|.++.
T Consensus 242 -----~~~~~~~~~~L~~~G~~v~ 260 (339)
T cd08232 242 -----PAALASALRVVRPGGTVVQ 260 (339)
T ss_pred -----HHHHHHHHHHHhcCCEEEE
Confidence 3467889999999997764
No 326
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=63.25 E-value=26 Score=32.97 Aligned_cols=88 Identities=14% Similarity=0.235 Sum_probs=52.6
Q ss_pred CCCCeEEEECCC-cchhc---cCCCCCC-eEEEEeCCHHHHhhCCCC-CcEEEecCCCCCC----C-CCCCCceeEEEec
Q 021661 147 TPGVSILDLCSS-WVSHF---PPGYKQD-RIVGMGMNEEELKRNPVL-TEYVVQDLNLNPK----L-PFEDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~~---~~~~~~~-~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~----l-p~~~~sfDlVis~ 215 (309)
.++.+||=.|+| .|... ... .+. +|+++|.+++-++.+++. .+. ..|... ++ + ....+.+|+|+-.
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~-~G~~~Vi~~~~~~~r~~~a~~~Ga~~-~i~~~~-~~~~~~i~~~~~~g~d~vid~ 266 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVA-AGASQVVAVDLNEDKLALARELGATA-TVNAGD-PNAVEQVRELTGGGVDYAFEM 266 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-cCCCcEEEEcCCHHHHHHHHHcCCce-EeCCCc-hhHHHHHHHHhCCCCCEEEEC
Confidence 457888889987 33222 222 355 699999999988877653 211 112100 11 0 0112358988854
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
.. -...+....+.|+++|.+++
T Consensus 267 ~G------~~~~~~~~~~~l~~~G~iv~ 288 (371)
T cd08281 267 AG------SVPALETAYEITRRGGTTVT 288 (371)
T ss_pred CC------ChHHHHHHHHHHhcCCEEEE
Confidence 32 12567788899999997654
No 327
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=63.07 E-value=13 Score=31.21 Aligned_cols=45 Identities=24% Similarity=0.258 Sum_probs=32.5
Q ss_pred CCCCceeEEEeccchhc-----cC-C-------HHHHHHHHHhhcccCcEEEEEecCc
Q 021661 204 FEDNSFDVITNVVSVDY-----LT-K-------PIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 204 ~~~~sfDlVis~~vl~~-----l~-d-------~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
...+.||.|+-++---- -. + ...+|+.+.++|+++|.+.|+..+.
T Consensus 71 ~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~ 128 (166)
T PF10354_consen 71 LKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG 128 (166)
T ss_pred ccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 35678999998752111 00 0 2578999999999999999987754
No 328
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=62.75 E-value=5.9 Score=37.27 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=13.8
Q ss_pred CCCCCceeEEEeccchhccC
Q 021661 203 PFEDNSFDVITNVVSVDYLT 222 (309)
Q Consensus 203 p~~~~sfDlVis~~vl~~l~ 222 (309)
-+|+++.|+++|+.+|||+.
T Consensus 102 LfP~~Svh~~~Ss~alHWLS 121 (334)
T PF03492_consen 102 LFPSNSVHFGHSSYALHWLS 121 (334)
T ss_dssp -S-TT-EEEEEEES-TTB-S
T ss_pred cCCCCceEEEEEechhhhcc
Confidence 36899999999999999974
No 329
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=62.71 E-value=22 Score=31.92 Aligned_cols=88 Identities=11% Similarity=0.144 Sum_probs=51.5
Q ss_pred CCCeEEEECCC-cchh---ccCCCCCC-eEEEEeCCHHHHhhCCCC-CcEEEecCCCC-CCC-CC-CCCceeEEEeccch
Q 021661 148 PGVSILDLCSS-WVSH---FPPGYKQD-RIVGMGMNEEELKRNPVL-TEYVVQDLNLN-PKL-PF-EDNSFDVITNVVSV 218 (309)
Q Consensus 148 ~~~~ILDiGcG-~g~~---~~~~~~~~-~v~giD~S~~~l~~a~~~-i~~~~~D~~~~-~~l-p~-~~~sfDlVis~~vl 218 (309)
++.+||=+|+| .|.. +.... +. +|+++|.+++-++.+++. .+. ..|.... ..+ .. ....+|+|+-...
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~-G~~~Vi~~~~~~~r~~~a~~~Ga~~-~i~~~~~~~~~~~~~~~~g~d~vid~~G- 196 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAA-GAARVVAADPSPDRRELALSFGATA-LAEPEVLAERQGGLQNGRGVDVALEFSG- 196 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHcCCcE-ecCchhhHHHHHHHhCCCCCCEEEECCC-
Confidence 57899989987 3322 22233 44 499999999888776653 111 1111000 000 01 1235888876432
Q ss_pred hccCCHHHHHHHHHhhcccCcEEEE
Q 021661 219 DYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 219 ~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
-...++++.+.|+|+|.+++
T Consensus 197 -----~~~~~~~~~~~l~~~G~iv~ 216 (280)
T TIGR03366 197 -----ATAAVRACLESLDVGGTAVL 216 (280)
T ss_pred -----ChHHHHHHHHHhcCCCEEEE
Confidence 13578888999999997654
No 330
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=62.48 E-value=17 Score=35.32 Aligned_cols=85 Identities=8% Similarity=0.047 Sum_probs=52.5
Q ss_pred CCCCeEEEECCC-cchhc--cCCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCCCCCceeEEEeccchhccCC
Q 021661 147 TPGVSILDLCSS-WVSHF--PPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK 223 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~~--~~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d 223 (309)
.++.+|+=+|+| .|... .....+.+|+.+|.++.-++.|+..- +...+. ++. . ...|+|+.... .
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G-~~~~~~---~e~-v--~~aDVVI~atG-----~ 267 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEG-YEVMTM---EEA-V--KEGDIFVTTTG-----N 267 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcC-CEEccH---HHH-H--cCCCEEEECCC-----C
Confidence 458899999999 44322 22233668999999988777776531 111222 111 1 24799987532 2
Q ss_pred HHHHHHH-HHhhcccCcEEEEE
Q 021661 224 PIEVFKE-MCQVLKPGGLAIVS 244 (309)
Q Consensus 224 ~~~~l~~-i~rvLkpGG~lii~ 244 (309)
..++.. ..+.+|+||.++..
T Consensus 268 -~~~i~~~~l~~mk~Ggilvnv 288 (413)
T cd00401 268 -KDIITGEHFEQMKDGAIVCNI 288 (413)
T ss_pred -HHHHHHHHHhcCCCCcEEEEe
Confidence 345554 58899999987554
No 331
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=62.35 E-value=18 Score=34.63 Aligned_cols=99 Identities=18% Similarity=0.246 Sum_probs=55.6
Q ss_pred CCCCeEEEECCCcch----h---ccC---CCCCCeEEEEeC----CHHHHhhCCCC---------C--cEEEecCCCCCC
Q 021661 147 TPGVSILDLCSSWVS----H---FPP---GYKQDRIVGMGM----NEEELKRNPVL---------T--EYVVQDLNLNPK 201 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~----~---~~~---~~~~~~v~giD~----S~~~l~~a~~~---------i--~~~~~D~~~~~~ 201 (309)
.+..+|+|+|.|.|. . +.. ..|..+||||+. +...++...++ + +|...-....+.
T Consensus 109 ~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~ 188 (374)
T PF03514_consen 109 ERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLED 188 (374)
T ss_pred CcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhh
Confidence 346799999888662 1 111 124459999999 66666654432 2 333321110123
Q ss_pred C-----CCCCCceeEEEeccchhccCC-------HHHHHHHHHhhcccCcEEEEEe
Q 021661 202 L-----PFEDNSFDVITNVVSVDYLTK-------PIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 202 l-----p~~~~sfDlVis~~vl~~l~d-------~~~~l~~i~rvLkpGG~lii~~ 245 (309)
+ ...++..=+|-|.+.|||+.+ +...+=...|.|+|.-.++++-
T Consensus 189 l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E~ 244 (374)
T PF03514_consen 189 LDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVEQ 244 (374)
T ss_pred CCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEee
Confidence 2 223333334446678898852 3444555666889997777663
No 332
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=61.48 E-value=20 Score=31.15 Aligned_cols=97 Identities=11% Similarity=0.097 Sum_probs=59.6
Q ss_pred CCCeEEEECCCcc-hhccC------CCCCCeEEEEeCCHHHHhhCCC---CCcEEEecCCCCCCCC-------CCCCcee
Q 021661 148 PGVSILDLCSSWV-SHFPP------GYKQDRIVGMGMNEEELKRNPV---LTEYVVQDLNLNPKLP-------FEDNSFD 210 (309)
Q Consensus 148 ~~~~ILDiGcG~g-~~~~~------~~~~~~v~giD~S~~~l~~a~~---~i~~~~~D~~~~~~lp-------~~~~sfD 210 (309)
++..|+|+|.-+| +.+.. .....+|+++|++-..++.+.. .+.|++++- .+.. ...+.--
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss---~dpai~eqi~~~~~~y~k 145 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSS---TDPAIAEQIRRLKNEYPK 145 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCC---CCHHHHHHHHHHhcCCCc
Confidence 3679999999644 22221 1223589999999776543322 488999987 3321 1122122
Q ss_pred EEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 211 VITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 211 lVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+.+|-.+-|+...--+.|+-..++|.-|-+++++..+
T Consensus 146 IfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~ 182 (237)
T COG3510 146 IFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSN 182 (237)
T ss_pred EEEEecCCchHHHHHHHHHHhhhHhhcCceEEEeccc
Confidence 3334445555555556777778888888899888665
No 333
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=60.74 E-value=22 Score=32.67 Aligned_cols=90 Identities=17% Similarity=0.201 Sum_probs=51.0
Q ss_pred CCCCeEEEECCC-cchhc---cCCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCC------CCCCCceeEEEecc
Q 021661 147 TPGVSILDLCSS-WVSHF---PPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKL------PFEDNSFDVITNVV 216 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~~---~~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~l------p~~~~sfDlVis~~ 216 (309)
.++.+||-.|+| .|..+ ........+++++.++...+.+++.-.-...+... ..+ -...+.+|+|+...
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~-~~~~~~i~~~~~~~~~d~vld~~ 244 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKN-GDIVEQILELTGGRGVDCVIEAV 244 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCc-chHHHHHHHHcCCCCCcEEEEcc
Confidence 457889988876 33222 22222247889988887776654431111112200 111 01235699998643
Q ss_pred chhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 217 SVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 217 vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
.- ...+.++.+.|+++|.++.
T Consensus 245 g~------~~~~~~~~~~l~~~G~~v~ 265 (347)
T cd05278 245 GF------EETFEQAVKVVRPGGTIAN 265 (347)
T ss_pred CC------HHHHHHHHHHhhcCCEEEE
Confidence 21 2578888999999997763
No 334
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=60.06 E-value=12 Score=34.63 Aligned_cols=96 Identities=13% Similarity=-0.024 Sum_probs=53.7
Q ss_pred CCCeEEEECCC-cchhcc---CCCCCCeEEEEeCCHHHH-hhCCCC-CcEEEecCCCCCCCCCCCCceeEEEeccchhcc
Q 021661 148 PGVSILDLCSS-WVSHFP---PGYKQDRIVGMGMNEEEL-KRNPVL-TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYL 221 (309)
Q Consensus 148 ~~~~ILDiGcG-~g~~~~---~~~~~~~v~giD~S~~~l-~~a~~~-i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l 221 (309)
++.+|+=+|+| .|.... ......+|+.+|.+++-. +.+++. ... .+. .++.-.-...|+|++...-.+.
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~--~~~---~~~~~~l~~aDvVi~at~~~~~ 251 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNA--VPL---DELLELLNEADVVISATGAPHY 251 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeE--EeH---HHHHHHHhcCCEEEECCCCCch
Confidence 47899999999 443221 122345899999997643 344332 222 122 1111111347999988765443
Q ss_pred CCHHHHHHHHHhhcccCcEEEEEecCcchh
Q 021661 222 TKPIEVFKEMCQVLKPGGLAIVSFSNRCFW 251 (309)
Q Consensus 222 ~d~~~~l~~i~rvLkpGG~lii~~~~~~~~ 251 (309)
...+..+....+.+|.+++....|...
T Consensus 252 ---~~~~~~~~~~~~~~~~~viDlavPrdi 278 (311)
T cd05213 252 ---AKIVERAMKKRSGKPRLIVDLAVPRDI 278 (311)
T ss_pred ---HHHHHHHHhhCCCCCeEEEEeCCCCCC
Confidence 344444444333367899998875443
No 335
>PLN02740 Alcohol dehydrogenase-like
Probab=59.82 E-value=36 Score=32.18 Aligned_cols=89 Identities=15% Similarity=0.218 Sum_probs=52.4
Q ss_pred CCCCeEEEECCC-cchh---ccCCCCCC-eEEEEeCCHHHHhhCCCC-CcEEEecCCCCC-CC-----CCCCCceeEEEe
Q 021661 147 TPGVSILDLCSS-WVSH---FPPGYKQD-RIVGMGMNEEELKRNPVL-TEYVVQDLNLNP-KL-----PFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~---~~~~~~~~-~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~-~l-----p~~~~sfDlVis 214 (309)
.++.+||=+|+| .|.. +... .+. +|+++|.+++-++.+++. .+. ..|..... ++ ....+.+|+|+-
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~-~G~~~Vi~~~~~~~r~~~a~~~Ga~~-~i~~~~~~~~~~~~v~~~~~~g~dvvid 274 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARA-RGASKIIGVDINPEKFEKGKEMGITD-FINPKDSDKPVHERIREMTGGGVDYSFE 274 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-CCCCcEEEEcCChHHHHHHHHcCCcE-EEecccccchHHHHHHHHhCCCCCEEEE
Confidence 558899999997 3322 2233 345 699999999988887654 111 11220000 01 011225898886
Q ss_pred ccchhccCCHHHHHHHHHhhcccC-cEEEE
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPG-GLAIV 243 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpG-G~lii 243 (309)
... ....+.+..+.+++| |.+++
T Consensus 275 ~~G------~~~~~~~a~~~~~~g~G~~v~ 298 (381)
T PLN02740 275 CAG------NVEVLREAFLSTHDGWGLTVL 298 (381)
T ss_pred CCC------ChHHHHHHHHhhhcCCCEEEE
Confidence 543 125677788889997 86544
No 336
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=59.13 E-value=11 Score=35.68 Aligned_cols=37 Identities=8% Similarity=-0.018 Sum_probs=27.3
Q ss_pred CCeEEEECCCcchhc-------cCCC----CCCeEEEEeCCHHHHhhC
Q 021661 149 GVSILDLCSSWVSHF-------PPGY----KQDRIVGMGMNEEELKRN 185 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~-------~~~~----~~~~v~giD~S~~~l~~a 185 (309)
+..++|+|.|.|... .... ...++.-|++|++..+.-
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Q 125 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQ 125 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHH
Confidence 568999999988432 1223 467999999999977643
No 337
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=58.35 E-value=16 Score=35.06 Aligned_cols=55 Identities=13% Similarity=0.018 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEECCCcch--hccCCCCCCeEEEEeCCHHHHhhCC
Q 021661 130 AIAALTKYYSEVFPPSNTPGVSILDLCSSWVS--HFPPGYKQDRIVGMGMNEEELKRNP 186 (309)
Q Consensus 130 ~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~--~~~~~~~~~~v~giD~S~~~l~~a~ 186 (309)
..+++.+++.+...- ..-..++|+|.|.|- .+.....+..|.+||-|....+.|+
T Consensus 137 Ei~~lselvSsi~~f--~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~ 193 (476)
T KOG2651|consen 137 EIRRLSELVSSISDF--TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQ 193 (476)
T ss_pred HHHHHHHHHHHHHhh--cCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHH
Confidence 344555555443332 224699999999883 3344445789999999977665543
No 338
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=57.72 E-value=5.2 Score=34.36 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=20.6
Q ss_pred CHHHHHHHHHhhcccCcEEEEEecC
Q 021661 223 KPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 223 d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
-....+.++.|+|||||.+++....
T Consensus 34 ~~~~~~~~~~rvLk~~g~~~i~~~~ 58 (231)
T PF01555_consen 34 WMEEWLKECYRVLKPGGSIFIFIDD 58 (231)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEE-C
T ss_pred HHHHHHHHHHhhcCCCeeEEEEecc
Confidence 3578999999999999998887654
No 339
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=56.82 E-value=41 Score=30.91 Aligned_cols=89 Identities=11% Similarity=0.181 Sum_probs=51.9
Q ss_pred CCCCeEEEECCC-cchh---ccCCCCCCe-EEEEeCCHHHHhhCCCC-CcEEEecCCCC--CCC-CC-CCCceeEEEecc
Q 021661 147 TPGVSILDLCSS-WVSH---FPPGYKQDR-IVGMGMNEEELKRNPVL-TEYVVQDLNLN--PKL-PF-EDNSFDVITNVV 216 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~---~~~~~~~~~-v~giD~S~~~l~~a~~~-i~~~~~D~~~~--~~l-p~-~~~sfDlVis~~ 216 (309)
.++.+||=+|+| .|.. +... .+.+ |+++|.+++-++.+++. .+. ..|.... ..+ .. ....+|+|+-..
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~-~G~~~vi~~~~~~~~~~~~~~~ga~~-~i~~~~~~~~~~~~~~~~~~~d~vid~~ 239 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARA-LGAEDVIGVDPSPERLELAKALGADF-VINSGQDDVQEIRELTSGAGADVAIECS 239 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-cCCCEEEEECCCHHHHHHHHHhCCCE-EEcCCcchHHHHHHHhCCCCCCEEEECC
Confidence 458899989987 3322 2222 3556 99999999888776543 211 1222100 011 11 223689988543
Q ss_pred chhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 217 SVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 217 vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
. ....+....+.|+++|.+++
T Consensus 240 g------~~~~~~~~~~~l~~~G~~v~ 260 (339)
T cd08239 240 G------NTAARRLALEAVRPWGRLVL 260 (339)
T ss_pred C------CHHHHHHHHHHhhcCCEEEE
Confidence 2 12456777889999997754
No 340
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=56.28 E-value=44 Score=30.43 Aligned_cols=88 Identities=18% Similarity=0.170 Sum_probs=52.7
Q ss_pred CCCCeEEEECCC-cchhc---cCCCCCCe-EEEEeCCHHHHhhCCCC-CcEEEecCCCCCCC----CCCCCceeEEEecc
Q 021661 147 TPGVSILDLCSS-WVSHF---PPGYKQDR-IVGMGMNEEELKRNPVL-TEYVVQDLNLNPKL----PFEDNSFDVITNVV 216 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~~---~~~~~~~~-v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~l----p~~~~sfDlVis~~ 216 (309)
.++.+||-+|+| .|..+ ... .+.+ |++++-+++..+.+++. ... ..+... ... ....+.+|+|+...
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~-~G~~~v~~~~~~~~~~~~~~~~g~~~-~~~~~~-~~~~~~~~~~~~~vd~v~~~~ 234 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKL-NGASRVTVAEPNEEKLELAKKLGATE-TVDPSR-EDPEAQKEDNPYGFDVVIEAT 234 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-cCCcEEEEECCCHHHHHHHHHhCCeE-EecCCC-CCHHHHHHhcCCCCcEEEECC
Confidence 457899999876 33222 222 3445 89999998887766432 222 222210 111 11345699998653
Q ss_pred chhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 217 SVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 217 vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
. ....+.++.+.|+++|.++.
T Consensus 235 ~------~~~~~~~~~~~l~~~G~~v~ 255 (334)
T cd08234 235 G------VPKTLEQAIEYARRGGTVLV 255 (334)
T ss_pred C------ChHHHHHHHHHHhcCCEEEE
Confidence 2 13578888999999997754
No 341
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=55.73 E-value=20 Score=32.53 Aligned_cols=101 Identities=11% Similarity=0.105 Sum_probs=47.3
Q ss_pred CCCCCeEEEECCCc------chh-ccCCCC-CCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 146 NTPGVSILDLCSSW------VSH-FPPGYK-QDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 146 ~~~~~~ILDiGcG~------g~~-~~~~~~-~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
....++||.+|+|. |.. +.+-.| ++-++-.|+.+-.-+ ....+.+|. ..+. .+.+||+|+|-.-
T Consensus 59 VP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~vSD----a~~~~~~Dc---~t~~-~~~k~DlIiSDmY 130 (299)
T PF06460_consen 59 VPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYVSD----ADQSIVGDC---RTYM-PPDKFDLIISDMY 130 (299)
T ss_dssp --TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-S----SSEEEES-G---GGEE-ESS-EEEEEE---
T ss_pred eccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhccc----cCCceeccc---cccC-CCCcccEEEEecc
Confidence 34579999999972 232 233333 557777887643211 133567776 4443 3567999998642
Q ss_pred ---hhcc----CCHHH----HHHHHHhhcccCcEEEEEecCcchhHHH
Q 021661 218 ---VDYL----TKPIE----VFKEMCQVLKPGGLAIVSFSNRCFWTKA 254 (309)
Q Consensus 218 ---l~~l----~d~~~----~l~~i~rvLkpGG~lii~~~~~~~~~~~ 254 (309)
..++ ...+. +..-|...|+-||.++|-+....+..+.
T Consensus 131 d~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw~~~L 178 (299)
T PF06460_consen 131 DGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSWNAQL 178 (299)
T ss_dssp -TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS--HHH
T ss_pred cccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecccccHHH
Confidence 1112 11233 3444567788899998887665443333
No 342
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=54.97 E-value=4.5 Score=39.76 Aligned_cols=97 Identities=21% Similarity=0.255 Sum_probs=62.7
Q ss_pred CCCCeEEEECCCcch---hccCCCC-CCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCC-CCCCCCCCceeEE
Q 021661 147 TPGVSILDLCSSWVS---HFPPGYK-QDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLN-PKLPFEDNSFDVI 212 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~---~~~~~~~-~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~-~~lp~~~~sfDlV 212 (309)
.++.+|||.=|++|. -++...+ ..+|++-|.+++.++..+++ ++-.+.|++.. ..-+-....||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 347799999555442 1222233 35899999999999866655 33445565211 1112234678888
Q ss_pred EeccchhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 213 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 213 is~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
=. +-.-.+..+|..+.+.++.||+|+++...
T Consensus 188 DL----DPyGs~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 188 DL----DPYGSPSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred ec----CCCCCccHHHHHHHHHhhcCCEEEEEecc
Confidence 53 33345678999999999999999998543
No 343
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=54.51 E-value=6.3 Score=22.43 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=14.5
Q ss_pred cceecccccccccccccccccc
Q 021661 27 STCLSCVSGVSKKSDCRRFKAS 48 (309)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~ 48 (309)
++|+.|.+.++...=.|+-|.+
T Consensus 1 K~CP~C~~~V~~~~~~Cp~CG~ 22 (26)
T PF10571_consen 1 KTCPECGAEVPESAKFCPHCGY 22 (26)
T ss_pred CcCCCCcCCchhhcCcCCCCCC
Confidence 4677777777766666665543
No 344
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=53.79 E-value=36 Score=30.10 Aligned_cols=87 Identities=11% Similarity=0.081 Sum_probs=51.0
Q ss_pred CCCCeEEEECCCc-chhc---cCCCCCCe-EEEEeCCHHHHhhCCCCC-cEEEecCCCCCCCCCCCCceeEEEeccchhc
Q 021661 147 TPGVSILDLCSSW-VSHF---PPGYKQDR-IVGMGMNEEELKRNPVLT-EYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 220 (309)
Q Consensus 147 ~~~~~ILDiGcG~-g~~~---~~~~~~~~-v~giD~S~~~l~~a~~~i-~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~ 220 (309)
.++.+||=.|+|. |... ... .+.+ |++++.+++.++.+++.- .-...+. ..-......+|+|+....-
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~-~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~d~vl~~~~~-- 169 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKA-AGAREVVGVDPDAARRELAEALGPADPVAAD---TADEIGGRGADVVIEASGS-- 169 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-cCCCcEEEECCCHHHHHHHHHcCCCcccccc---chhhhcCCCCCEEEEccCC--
Confidence 4578898889873 3222 222 2455 999999988877665431 0000000 0001123468988864321
Q ss_pred cCCHHHHHHHHHhhcccCcEEEE
Q 021661 221 LTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 221 l~d~~~~l~~i~rvLkpGG~lii 243 (309)
...+.+..+.|+++|.++.
T Consensus 170 ----~~~~~~~~~~l~~~g~~~~ 188 (277)
T cd08255 170 ----PSALETALRLLRDRGRVVL 188 (277)
T ss_pred ----hHHHHHHHHHhcCCcEEEE
Confidence 2467788899999997754
No 345
>PLN02827 Alcohol dehydrogenase-like
Probab=53.28 E-value=41 Score=31.84 Aligned_cols=89 Identities=15% Similarity=0.125 Sum_probs=51.8
Q ss_pred CCCCeEEEECCC-cchh---ccCCCCCC-eEEEEeCCHHHHhhCCCC-CcEEEecCCCC-CC----CC-CCCCceeEEEe
Q 021661 147 TPGVSILDLCSS-WVSH---FPPGYKQD-RIVGMGMNEEELKRNPVL-TEYVVQDLNLN-PK----LP-FEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~---~~~~~~~~-~v~giD~S~~~l~~a~~~-i~~~~~D~~~~-~~----lp-~~~~sfDlVis 214 (309)
.++.+||=.|+| .|.. +.... +. .|+++|.+++-++.+++. .+.+ .|.... +. +. ...+.+|+|+-
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~-G~~~vi~~~~~~~~~~~a~~lGa~~~-i~~~~~~~~~~~~v~~~~~~g~d~vid 269 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLR-GASQIIGVDINPEKAEKAKTFGVTDF-INPNDLSEPIQQVIKRMTGGGADYSFE 269 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHHcCCcEE-EcccccchHHHHHHHHHhCCCCCEEEE
Confidence 458899999987 3322 22233 44 699999999888877653 2211 122000 00 00 11225888875
Q ss_pred ccchhccCCHHHHHHHHHhhcccC-cEEEE
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPG-GLAIV 243 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpG-G~lii 243 (309)
... ....+....+.|++| |.+++
T Consensus 270 ~~G------~~~~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 270 CVG------DTGIATTALQSCSDGWGLTVT 293 (378)
T ss_pred CCC------ChHHHHHHHHhhccCCCEEEE
Confidence 432 124577788899998 97754
No 346
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=52.25 E-value=67 Score=29.65 Aligned_cols=89 Identities=11% Similarity=0.159 Sum_probs=49.9
Q ss_pred CCCCeEEEECCC-cchh---ccCCCCCCe-EEEEeCCHHHHhhCCCC-CcEEEecCCCC--CCC-C-CCCCcee-EEEec
Q 021661 147 TPGVSILDLCSS-WVSH---FPPGYKQDR-IVGMGMNEEELKRNPVL-TEYVVQDLNLN--PKL-P-FEDNSFD-VITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~---~~~~~~~~~-v~giD~S~~~l~~a~~~-i~~~~~D~~~~--~~l-p-~~~~sfD-lVis~ 215 (309)
.++.+||=.|+| .|.. +... .+.+ |+++|.+++-++.+++. .+. ..|.... ..+ . .....+| +|+-+
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~-~G~~~v~~~~~~~~~~~~~~~~Ga~~-~i~~~~~~~~~~~~~~~~~~~d~~v~d~ 236 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVA-LGAKSVTAIDINSEKLALAKSLGAMQ-TFNSREMSAPQIQSVLRELRFDQLILET 236 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEECCCHHHHHHHHHcCCce-EecCcccCHHHHHHHhcCCCCCeEEEEC
Confidence 457899999987 3322 2222 2454 79999999888776543 111 1122000 000 0 1223577 55432
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
.. . ...+.+..+.|++||.+++
T Consensus 237 ~G-----~-~~~~~~~~~~l~~~G~iv~ 258 (347)
T PRK10309 237 AG-----V-PQTVELAIEIAGPRAQLAL 258 (347)
T ss_pred CC-----C-HHHHHHHHHHhhcCCEEEE
Confidence 21 1 3577888999999997654
No 347
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=52.23 E-value=8.7 Score=37.22 Aligned_cols=40 Identities=23% Similarity=0.310 Sum_probs=33.0
Q ss_pred CCCeEEEECCCcch-hccCCCCCCeEEEEeCCHHHHhhCCC
Q 021661 148 PGVSILDLCSSWVS-HFPPGYKQDRIVGMGMNEEELKRNPV 187 (309)
Q Consensus 148 ~~~~ILDiGcG~g~-~~~~~~~~~~v~giD~S~~~l~~a~~ 187 (309)
++..|-|+.||.|- .++.+.++++|++-|++++|++..+.
T Consensus 249 ~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ 289 (495)
T KOG2078|consen 249 PGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKA 289 (495)
T ss_pred CcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHH
Confidence 48899999999884 45556678999999999999986554
No 348
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=52.12 E-value=70 Score=29.56 Aligned_cols=96 Identities=14% Similarity=0.189 Sum_probs=64.0
Q ss_pred CCeEEEECCCcc-hhccCCCC-CCeEEEEeCCHHHHhhCCC-----------CCcEEEecCCCCCCCC-------CCCCc
Q 021661 149 GVSILDLCSSWV-SHFPPGYK-QDRIVGMGMNEEELKRNPV-----------LTEYVVQDLNLNPKLP-------FEDNS 208 (309)
Q Consensus 149 ~~~ILDiGcG~g-~~~~~~~~-~~~v~giD~S~~~l~~a~~-----------~i~~~~~D~~~~~~lp-------~~~~s 208 (309)
-..|+-||||.- ..+....+ +.+|.-+|.- +.++.-++ ..+++..|+.. .+.+ +..+.
T Consensus 93 ~~qvViLgaGLDTRayRl~~~~~~~vfEvD~P-evi~~K~~~l~e~~~~~~~~~~~Va~Dl~~-~dw~~~L~~~G~d~~~ 170 (297)
T COG3315 93 IRQVVILGAGLDTRAYRLDWPKGTRVFEVDLP-EVIEFKKKLLAERGATPPAHRRLVAVDLRE-DDWPQALAAAGFDRSR 170 (297)
T ss_pred ccEEEEeccccccceeecCCCCCCeEEECCCc-HHHHHHHHHhhhcCCCCCceEEEEeccccc-cchHHHHHhcCCCcCC
Confidence 468999999954 33333333 5788888884 44442111 26788888831 1221 22334
Q ss_pred eeEEEeccchhccCC--HHHHHHHHHhhcccCcEEEEEec
Q 021661 209 FDVITNVVSVDYLTK--PIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 209 fDlVis~~vl~~l~d--~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
-=++++-.++.+++. ..++|..|...+.||-.++...+
T Consensus 171 pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 171 PTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred CeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 457888889999964 46899999999999888888765
No 349
>PTZ00357 methyltransferase; Provisional
Probab=51.89 E-value=22 Score=36.85 Aligned_cols=87 Identities=15% Similarity=0.099 Sum_probs=53.6
Q ss_pred CeEEEECCCcchhc-------cCCCCCCeEEEEeCCHHHH---hhC--C-C-----------CCcEEEecCCCCCCCCCC
Q 021661 150 VSILDLCSSWVSHF-------PPGYKQDRIVGMGMNEEEL---KRN--P-V-----------LTEYVVQDLNLNPKLPFE 205 (309)
Q Consensus 150 ~~ILDiGcG~g~~~-------~~~~~~~~v~giD~S~~~l---~~a--~-~-----------~i~~~~~D~~~~~~lp~~ 205 (309)
..|+=+|+|-|-++ ....-..+|++|+-|+... ... + + .++++..|+ ..+..+
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDM---R~W~~p 778 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADG---RTIATA 778 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcc---cccccc
Confidence 35777899977332 1222345899999995421 111 1 0 168889998 555322
Q ss_pred -----------CCceeEEEeccchhccCC---HHHHHHHHHhhccc----CcE
Q 021661 206 -----------DNSFDVITNVVSVDYLTK---PIEVFKEMCQVLKP----GGL 240 (309)
Q Consensus 206 -----------~~sfDlVis~~vl~~l~d---~~~~l~~i~rvLkp----GG~ 240 (309)
.+.+|+||+=. |--+-| -.+.|..+.+.||+ +|+
T Consensus 779 e~~~s~~~P~~~gKaDIVVSEL-LGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 779 AENGSLTLPADFGLCDLIVSEL-LGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccccccceehHhh-hcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 24799999732 222222 25888888998887 786
No 350
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=51.44 E-value=36 Score=32.19 Aligned_cols=95 Identities=17% Similarity=0.227 Sum_probs=54.6
Q ss_pred CCCCeEEEECCC-cchh---ccCCCCCCeEEEEeCCHHHHhhCCCC--CcEEEecCC--CCCCC-CCCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSS-WVSH---FPPGYKQDRIVGMGMNEEELKRNPVL--TEYVVQDLN--LNPKL-PFEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~--i~~~~~D~~--~~~~l-p~~~~sfDlVis~~v 217 (309)
+++.++.=+||| .|.. -+......+|+++|+++.-++.|++. .+++...-. ..+.+ .+.++..|.++-
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e--- 260 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAFE--- 260 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEEEE---
Confidence 557888888887 4422 23334566999999999999999885 333322110 00000 122334555432
Q ss_pred hhccCCHHHHHHHHHhhcccCcEE-EEEecC
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLA-IVSFSN 247 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~l-ii~~~~ 247 (309)
-.-+. +.+++....+.++|.. ++-++.
T Consensus 261 --~~G~~-~~~~~al~~~~~~G~~v~iGv~~ 288 (366)
T COG1062 261 --CVGNV-EVMRQALEATHRGGTSVIIGVAG 288 (366)
T ss_pred --ccCCH-HHHHHHHHHHhcCCeEEEEecCC
Confidence 22222 3778888888889965 454544
No 351
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=50.48 E-value=13 Score=33.40 Aligned_cols=66 Identities=21% Similarity=0.318 Sum_probs=40.5
Q ss_pred CCCCCeEEEEeCCHHHHhhCCCC--CcEEEecCCCCCCCCCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEE
Q 021661 166 GYKQDRIVGMGMNEEELKRNPVL--TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLA 241 (309)
Q Consensus 166 ~~~~~~v~giD~S~~~l~~a~~~--i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~l 241 (309)
..+..+|+|.|.++..++.+.+. +.-...+. +.+ ..+|+|+.+.-+.. ...+++++...+++|..+
T Consensus 8 ~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~---~~~----~~~DlvvlavP~~~---~~~~l~~~~~~~~~~~iv 75 (258)
T PF02153_consen 8 AGPDVEVYGYDRDPETLEAALELGIIDEASTDI---EAV----EDADLVVLAVPVSA---IEDVLEEIAPYLKPGAIV 75 (258)
T ss_dssp TTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHH---HHG----GCCSEEEE-S-HHH---HHHHHHHHHCGS-TTSEE
T ss_pred CCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCH---hHh----cCCCEEEEcCCHHH---HHHHHHHhhhhcCCCcEE
Confidence 34567999999999999988543 22222222 222 23699998764443 467888888888876544
No 352
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=50.43 E-value=2.5e+02 Score=27.32 Aligned_cols=99 Identities=16% Similarity=0.096 Sum_probs=56.1
Q ss_pred CeEEEECCC-cc--hhccCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCC-------CCCCC-----CCCCceeEEE
Q 021661 150 VSILDLCSS-WV--SHFPPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNL-------NPKLP-----FEDNSFDVIT 213 (309)
Q Consensus 150 ~~ILDiGcG-~g--~~~~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~-------~~~lp-----~~~~sfDlVi 213 (309)
.+|-=+|=| .| .....+..+.+|+|+|+++.-++.-.+- ......+... ...+. ..-..-|+++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~i 89 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVFI 89 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcccCCEEE
Confidence 566666777 34 3344455678999999999988765442 2222222200 00010 0001345544
Q ss_pred ec-c-chh--ccCCH---HHHHHHHHhhcccCcEEEEEecCc
Q 021661 214 NV-V-SVD--YLTKP---IEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 214 s~-~-vl~--~l~d~---~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
.+ - -+. +-+|. ..+.+.+.++||+|-+++++...+
T Consensus 90 I~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~ 131 (436)
T COG0677 90 ICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTP 131 (436)
T ss_pred EEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCC
Confidence 32 1 222 23343 688999999999999999985543
No 353
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=49.80 E-value=73 Score=29.42 Aligned_cols=89 Identities=15% Similarity=0.122 Sum_probs=52.3
Q ss_pred CCCCeEEEECCC-cchh---ccCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCC-----C-CCCCceeEEEec
Q 021661 147 TPGVSILDLCSS-WVSH---FPPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKL-----P-FEDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~l-----p-~~~~sfDlVis~ 215 (309)
.++.+||=.|+| .|.. +........|+++|.+++.++.+++. ... ..|... .++ . .....+|+|+-+
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~-~v~~~~-~~~~~~i~~~~~~~~~d~vld~ 242 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATD-IVDYKN-GDVVEQILKLTGGKGVDAVIIA 242 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCce-EecCCC-CCHHHHHHHHhCCCCCcEEEEC
Confidence 457889988887 3322 22333223699999998877776653 111 112200 111 1 123458988854
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
.. -...+.++.+.|+++|.++.
T Consensus 243 ~g------~~~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 243 GG------GQDTFEQALKVLKPGGTISN 264 (351)
T ss_pred CC------CHHHHHHHHHHhhcCCEEEE
Confidence 32 12568899999999997653
No 354
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=49.47 E-value=1.7e+02 Score=27.83 Aligned_cols=135 Identities=13% Similarity=0.049 Sum_probs=66.1
Q ss_pred CeEEEECCC-cch-hc--cCCCCCCeEEEEeCCHHHHhhCCCCC--cEEEecCC-CC------CCCC-CC-------CCc
Q 021661 150 VSILDLCSS-WVS-HF--PPGYKQDRIVGMGMNEEELKRNPVLT--EYVVQDLN-LN------PKLP-FE-------DNS 208 (309)
Q Consensus 150 ~~ILDiGcG-~g~-~~--~~~~~~~~v~giD~S~~~l~~a~~~i--~~~~~D~~-~~------~~lp-~~-------~~s 208 (309)
++|+-+|+| .|+ ++ .....+..|+++|..+.+++.-++.- +....+.. .. ..+. .. -..
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~ 80 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAIAE 80 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHhcC
Confidence 478999998 443 21 12223578999999888887654431 11111110 00 1110 01 014
Q ss_pred eeEEEeccchhccCCHHHHHHHHHhhccc-------CcEEEEEecCcchhHHHhhhhh-cCCCCchhHhHHHHHHHhCCC
Q 021661 209 FDVITNVVSVDYLTKPIEVFKEMCQVLKP-------GGLAIVSFSNRCFWTKAISIWT-STGDADHVMIVGAYFHYAGGY 280 (309)
Q Consensus 209 fDlVis~~vl~~l~d~~~~l~~i~rvLkp-------GG~lii~~~~~~~~~~~~~~w~-~~~~~~h~~~~~~~f~~~~Gf 280 (309)
.|+|+..--..++ ..++..+...|++ +++.+++.-|-.-....+.... ...+ .-+..+++...||
T Consensus 81 ~dlvt~~v~~~~~---~s~~~~l~~~L~~R~~~~~~~~~~VlsceN~~~ng~~L~~~V~~~~~----~~~~~wi~~~~~f 153 (381)
T PRK02318 81 ADLVTTAVGPNIL---PFIAPLIAKGLKKRKAQGNTKPLNIIACENMIRGTSFLKKHVLKALS----EDEKAWLEEHVGF 153 (381)
T ss_pred CCEEEeCCCcccc---hhHHHHHHHHHHHHHHcCCCCCCEEEecCChhhHHHHHHHHHHHhCC----HHHHHHHHhcCCC
Confidence 6777655543433 3444444444433 3356777766433322222211 1111 2234556667778
Q ss_pred CCCceeeccCC
Q 021661 281 EPPQAVDISPN 291 (309)
Q Consensus 281 ~~~~~~~~~~~ 291 (309)
...-+-.+.|.
T Consensus 154 ~~t~VDrI~P~ 164 (381)
T PRK02318 154 VDSAVDRIVPA 164 (381)
T ss_pred CCcHHhcCCCC
Confidence 76555555553
No 355
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=48.83 E-value=60 Score=29.42 Aligned_cols=87 Identities=18% Similarity=0.190 Sum_probs=53.9
Q ss_pred CCCCeEEEECCC-cchhcc--CCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCCCCCceeEEEeccchhccCC
Q 021661 147 TPGVSILDLCSS-WVSHFP--PGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK 223 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~~~--~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d 223 (309)
.++.+||=.|+| .|..+. ....+.+|++++.+++..+.+++.---...+. ... ...+.+|+|+-...
T Consensus 154 ~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~---~~~-~~~~~~d~vid~~g------ 223 (319)
T cd08242 154 TPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVETVLPD---EAE-SEGGGFDVVVEATG------ 223 (319)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEeCc---ccc-ccCCCCCEEEECCC------
Confidence 457888888887 333221 12236679999999988887765311112222 111 23356999986531
Q ss_pred HHHHHHHHHhhcccCcEEEE
Q 021661 224 PIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 224 ~~~~l~~i~rvLkpGG~lii 243 (309)
-...+..+.+.|+++|.+++
T Consensus 224 ~~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 224 SPSGLELALRLVRPRGTVVL 243 (319)
T ss_pred ChHHHHHHHHHhhcCCEEEE
Confidence 13467788889999998775
No 356
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=48.79 E-value=2.2e+02 Score=26.20 Aligned_cols=116 Identities=15% Similarity=0.130 Sum_probs=67.9
Q ss_pred cccCCcccc--cCCHHHHHHHHHHHHhhCCC-----CCCCCCeEEEECCCc-chhccCCCCCCeEEEEeCCHHHHhhCC-
Q 021661 116 FYETPRFVT--HIDDPAIAALTKYYSEVFPP-----SNTPGVSILDLCSSW-VSHFPPGYKQDRIVGMGMNEEELKRNP- 186 (309)
Q Consensus 116 ~y~~~~~~~--~~~~~~~~~l~~~~~~~l~~-----~~~~~~~ILDiGcG~-g~~~~~~~~~~~v~giD~S~~~l~~a~- 186 (309)
|-++||..- .......-++.+.+...++. ...+++...|+|+-. |-...+...+..|+++|--+-.-....
T Consensus 172 ~mGIPRLKfp~dAPSRStLKLEEA~~tfip~~E~~~rL~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~ma~sL~dt 251 (358)
T COG2933 172 YMGIPRLKFPADAPSRSTLKLEEAFHTFIPRDEWDKRLAPGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGPMAQSLMDT 251 (358)
T ss_pred ccCCccccCCCCCCchhhhhHHHHHHHhcChhhhhhhhcCCceeeecccCCCccchhhhhcceEEEEeccchhhhhhhcc
Confidence 445666332 22222223455555555543 256789999998753 344455566789999997543322211
Q ss_pred CCCcEEEecCCCCCCCCCCCCceeEEEeccchhccCCHHHHHHHHHhhcccC
Q 021661 187 VLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPG 238 (309)
Q Consensus 187 ~~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpG 238 (309)
..++....|- -.........|..+|.. +..|..+-.-|...|..|
T Consensus 252 g~v~h~r~DG---fk~~P~r~~idWmVCDm----VEkP~rv~~li~~Wl~nG 296 (358)
T COG2933 252 GQVTHLREDG---FKFRPTRSNIDWMVCDM----VEKPARVAALIAKWLVNG 296 (358)
T ss_pred cceeeeeccC---cccccCCCCCceEEeeh----hcCcHHHHHHHHHHHHcc
Confidence 1266666666 23322345689888854 456777777777777654
No 357
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=47.19 E-value=82 Score=28.98 Aligned_cols=92 Identities=8% Similarity=-0.011 Sum_probs=50.5
Q ss_pred CCeEEEECCC-cchhcc--CCCCCCeEEEEeCCHHHHhhCCC-C-CcEEE-ecCC---CCCCCCCCCCceeEEEeccchh
Q 021661 149 GVSILDLCSS-WVSHFP--PGYKQDRIVGMGMNEEELKRNPV-L-TEYVV-QDLN---LNPKLPFEDNSFDVITNVVSVD 219 (309)
Q Consensus 149 ~~~ILDiGcG-~g~~~~--~~~~~~~v~giD~S~~~l~~a~~-~-i~~~~-~D~~---~~~~lp~~~~sfDlVis~~vl~ 219 (309)
.++|+=+|+| .|..+. ....+..|+.++-+.+.++.-++ . +.... ++.. .....+.+.+.||+|+...=-.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~ 81 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY 81 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH
Confidence 3579999998 443321 12235689999998765553332 1 21110 1000 0001111234799888754222
Q ss_pred ccCCHHHHHHHHHhhcccCcEEEE
Q 021661 220 YLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 220 ~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
+...+++.+...+.++..++.
T Consensus 82 ---~~~~al~~l~~~l~~~t~vv~ 102 (305)
T PRK05708 82 ---DAEPAVASLAHRLAPGAELLL 102 (305)
T ss_pred ---hHHHHHHHHHhhCCCCCEEEE
Confidence 456788899999998875443
No 358
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=47.04 E-value=8.8 Score=29.96 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=15.7
Q ss_pred cccc-eecccccccccc---ccccccc
Q 021661 25 GYST-CLSCVSGVSKKS---DCRRFKA 47 (309)
Q Consensus 25 ~~~~-~~~~~~~~~~~~---~~~~~~~ 47 (309)
|+|. |++|++||-... -.||.|.
T Consensus 7 GtKR~Cp~CG~kFYDLnk~PivCP~CG 33 (108)
T PF09538_consen 7 GTKRTCPSCGAKFYDLNKDPIVCPKCG 33 (108)
T ss_pred CCcccCCCCcchhccCCCCCccCCCCC
Confidence 5555 999999997544 3366554
No 359
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=47.02 E-value=29 Score=31.94 Aligned_cols=84 Identities=19% Similarity=0.155 Sum_probs=49.3
Q ss_pred CCCeEEEECCC-cchhc--cCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCCCCCCCceeEEEeccchhccCC
Q 021661 148 PGVSILDLCSS-WVSHF--PPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK 223 (309)
Q Consensus 148 ~~~~ILDiGcG-~g~~~--~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d 223 (309)
.+.+++=+|.| .|..+ .....+.+|+.+|.++...+.++.. ..+ .+. .+++-.-..+|+|+..-..
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~--~~~---~~l~~~l~~aDiVI~t~p~----- 220 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSP--FHL---SELAEEVGKIDIIFNTIPA----- 220 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCee--ecH---HHHHHHhCCCCEEEECCCh-----
Confidence 47899999998 33222 1222367999999998776655432 222 122 1222112358999986321
Q ss_pred HHHHHHHHHhhcccCcEEE
Q 021661 224 PIEVFKEMCQVLKPGGLAI 242 (309)
Q Consensus 224 ~~~~l~~i~rvLkpGG~li 242 (309)
...-+++.+.++||+.++
T Consensus 221 -~~i~~~~l~~~~~g~vII 238 (296)
T PRK08306 221 -LVLTKEVLSKMPPEALII 238 (296)
T ss_pred -hhhhHHHHHcCCCCcEEE
Confidence 123356777889977554
No 360
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=46.36 E-value=9 Score=36.55 Aligned_cols=95 Identities=9% Similarity=0.059 Sum_probs=49.2
Q ss_pred CCCeEEEECCC-cchhcc--CCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCCCCCCCceeEEEeccchhccCC
Q 021661 148 PGVSILDLCSS-WVSHFP--PGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK 223 (309)
Q Consensus 148 ~~~~ILDiGcG-~g~~~~--~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d 223 (309)
++.+|+=+|+| .|.... ...-+.+|+.+|.+++-++.+... ...+..+....+.+.-.-..+|+|++...+.--..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~ 245 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKA 245 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCCC
Confidence 45679989998 333221 122356899999998766554322 11122222000111101135899998643321112
Q ss_pred HHHHHHHHHhhcccCcEEE
Q 021661 224 PIEVFKEMCQVLKPGGLAI 242 (309)
Q Consensus 224 ~~~~l~~i~rvLkpGG~li 242 (309)
+.-+-+++.+.+|||+.++
T Consensus 246 p~lit~~~l~~mk~g~vIv 264 (370)
T TIGR00518 246 PKLVSNSLVAQMKPGAVIV 264 (370)
T ss_pred CcCcCHHHHhcCCCCCEEE
Confidence 2223356667789998654
No 361
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=45.69 E-value=67 Score=29.21 Aligned_cols=89 Identities=16% Similarity=0.036 Sum_probs=52.4
Q ss_pred CCCCeEEEECCC-cchhcc--CCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCCC-CCCCceeEEEeccchhcc
Q 021661 147 TPGVSILDLCSS-WVSHFP--PGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLP-FEDNSFDVITNVVSVDYL 221 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~~~--~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~lp-~~~~sfDlVis~~vl~~l 221 (309)
.++.+||-+|+| .|..+. ....+.+|++++.+++.++..++. .+.+..+-. .... ...+.+|+++....-
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~d~vi~~~~~--- 235 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGA--ELDEQAAAGGADVILVTVVS--- 235 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCC--cchHHhccCCCCEEEECCCc---
Confidence 557899999987 443321 122356899999999888766432 111111110 0110 012358988865321
Q ss_pred CCHHHHHHHHHhhcccCcEEEE
Q 021661 222 TKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 222 ~d~~~~l~~i~rvLkpGG~lii 243 (309)
...+.++.+.|+++|.++.
T Consensus 236 ---~~~~~~~~~~l~~~G~~i~ 254 (330)
T cd08245 236 ---GAAAEAALGGLRRGGRIVL 254 (330)
T ss_pred ---HHHHHHHHHhcccCCEEEE
Confidence 2467888999999997654
No 362
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=45.54 E-value=42 Score=31.13 Aligned_cols=74 Identities=15% Similarity=0.178 Sum_probs=53.2
Q ss_pred hhCCCCCcEEEecCCCCCCCC--CCCCceeEEEeccchhccCC--HHHHHHHHHhhcccCcEEEEEecC------cchhH
Q 021661 183 KRNPVLTEYVVQDLNLNPKLP--FEDNSFDVITNVVSVDYLTK--PIEVFKEMCQVLKPGGLAIVSFSN------RCFWT 252 (309)
Q Consensus 183 ~~a~~~i~~~~~D~~~~~~lp--~~~~sfDlVis~~vl~~l~d--~~~~l~~i~rvLkpGG~lii~~~~------~~~~~ 252 (309)
..+-+++....+|+ .++- -+-+..|.++...+=.|++| ....+.+|.|-+.+|..+|+-+.- .....
T Consensus 303 r~n~~RV~ihha~~---iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~VifRtaae~s~~~gR~s~ 379 (414)
T COG5379 303 RQNLRRVAIHHADI---IELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIFRTAAEVSRLPGRLST 379 (414)
T ss_pred HhhhhheeeecccH---HHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEEEecccceecCCCCCcH
Confidence 33334477888887 3332 25678999999999999975 578999999999999999886432 22344
Q ss_pred HHhhhhh
Q 021661 253 KAISIWT 259 (309)
Q Consensus 253 ~~~~~w~ 259 (309)
.+.+.|.
T Consensus 380 ~irdqw~ 386 (414)
T COG5379 380 QIRDQWA 386 (414)
T ss_pred HHHHHHH
Confidence 5556665
No 363
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=45.46 E-value=13 Score=34.47 Aligned_cols=27 Identities=33% Similarity=0.496 Sum_probs=21.1
Q ss_pred cCCHHHHHHHHHhhcccCcEE-EEEecC
Q 021661 221 LTKPIEVFKEMCQVLKPGGLA-IVSFSN 247 (309)
Q Consensus 221 l~d~~~~l~~i~rvLkpGG~l-ii~~~~ 247 (309)
+...+.+|..+..+|+|||.+ +|++..
T Consensus 216 L~~L~~~L~~~~~~L~~gGrl~VISfHS 243 (305)
T TIGR00006 216 LEELEEALQFAPNLLAPGGRLSIISFHS 243 (305)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEecCc
Confidence 345678999999999999965 666653
No 364
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=45.02 E-value=65 Score=30.81 Aligned_cols=91 Identities=21% Similarity=0.144 Sum_probs=52.1
Q ss_pred CCCCeEEEEC-CC-cchhc---cCCC--CCCeEEEEeCCHHHHhhCCCCC---------cEEEecCCCCCCC-----C-C
Q 021661 147 TPGVSILDLC-SS-WVSHF---PPGY--KQDRIVGMGMNEEELKRNPVLT---------EYVVQDLNLNPKL-----P-F 204 (309)
Q Consensus 147 ~~~~~ILDiG-cG-~g~~~---~~~~--~~~~v~giD~S~~~l~~a~~~i---------~~~~~D~~~~~~l-----p-~ 204 (309)
.++.+||=+| +| .|... .... ...+|+++|.+++-++.+++.. +....|.....++ . .
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t 253 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELT 253 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHh
Confidence 4578999887 46 44322 2222 1237999999999888876631 1122232100011 0 1
Q ss_pred CCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 205 EDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 205 ~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
....+|+|+.... ....+....+.|+++|.+++
T Consensus 254 ~g~g~D~vid~~g------~~~~~~~a~~~l~~~G~~v~ 286 (410)
T cd08238 254 GGQGFDDVFVFVP------VPELVEEADTLLAPDGCLNF 286 (410)
T ss_pred CCCCCCEEEEcCC------CHHHHHHHHHHhccCCeEEE
Confidence 2335888876432 13577888999999885543
No 365
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=44.93 E-value=30 Score=33.17 Aligned_cols=38 Identities=16% Similarity=0.134 Sum_probs=26.6
Q ss_pred CCCCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhh
Q 021661 147 TPGVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKR 184 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~ 184 (309)
.++.+||=|.+|+...+. ......+|++||+|+..+..
T Consensus 34 ~~~d~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~Q~aL 72 (380)
T PF11899_consen 34 GPDDRVLTITSAGCNALDYLLAGPKRIHAVDLNPAQNAL 72 (380)
T ss_pred CCCCeEEEEccCCchHHHHHhcCCceEEEEeCCHHHHHH
Confidence 568899999665443332 22334799999999987664
No 366
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=44.46 E-value=1.1e+02 Score=29.23 Aligned_cols=98 Identities=16% Similarity=0.224 Sum_probs=54.6
Q ss_pred CCCCeEEEECCC-cchh---ccCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCCC------CCCCceeEEEec
Q 021661 147 TPGVSILDLCSS-WVSH---FPPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLP------FEDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~lp------~~~~sfDlVis~ 215 (309)
.++.+||=.|+| .|.. +........|+.+|.+++-++.+++. .+. .+......++ .....+|+|+-.
T Consensus 184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~~--v~~~~~~~~~~~v~~~~~~~g~Dvvid~ 261 (393)
T TIGR02819 184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCET--VDLSKDATLPEQIEQILGEPEVDCAVDC 261 (393)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCeE--EecCCcccHHHHHHHHcCCCCCcEEEEC
Confidence 457788778997 3322 22233223466788988877777654 222 2210000110 122358999854
Q ss_pred cchhc--------cCCHHHHHHHHHhhcccCcEEEE-Eec
Q 021661 216 VSVDY--------LTKPIEVFKEMCQVLKPGGLAIV-SFS 246 (309)
Q Consensus 216 ~vl~~--------l~d~~~~l~~i~rvLkpGG~lii-~~~ 246 (309)
..-.. -.+....+++..+++++||.+++ .+.
T Consensus 262 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 262 VGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred CCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 43210 01234689999999999997654 443
No 367
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=43.75 E-value=1e+02 Score=28.81 Aligned_cols=89 Identities=12% Similarity=0.245 Sum_probs=52.0
Q ss_pred CCCCeEEEECCC-cchh---ccCCCCCC-eEEEEeCCHHHHhhCCCC-CcEEEecCCCCC-CC-----CCCCCceeEEEe
Q 021661 147 TPGVSILDLCSS-WVSH---FPPGYKQD-RIVGMGMNEEELKRNPVL-TEYVVQDLNLNP-KL-----PFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~---~~~~~~~~-~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~-~l-----p~~~~sfDlVis 214 (309)
.++.+||=+|+| .|.. ++.. .+. +|+++|.+++-++.+++. .+. ..|..... ++ ....+.+|+|+-
T Consensus 185 ~~g~~VlV~G~G~vG~~a~~~ak~-~G~~~vi~~~~~~~~~~~~~~lGa~~-~i~~~~~~~~~~~~v~~~~~~g~d~vid 262 (368)
T cd08300 185 EPGSTVAVFGLGAVGLAVIQGAKA-AGASRIIGIDINPDKFELAKKFGATD-CVNPKDHDKPIQQVLVEMTDGGVDYTFE 262 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHHcCCCE-EEcccccchHHHHHHHHHhCCCCcEEEE
Confidence 458899999987 3322 2222 345 799999999988877553 111 11221000 00 012236898886
Q ss_pred ccchhccCCHHHHHHHHHhhcccC-cEEEE
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPG-GLAIV 243 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpG-G~lii 243 (309)
... . ...+.+..+.|+++ |.+++
T Consensus 263 ~~g-----~-~~~~~~a~~~l~~~~G~~v~ 286 (368)
T cd08300 263 CIG-----N-VKVMRAALEACHKGWGTSVI 286 (368)
T ss_pred CCC-----C-hHHHHHHHHhhccCCCeEEE
Confidence 432 1 35777888899997 86653
No 368
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=43.17 E-value=39 Score=32.94 Aligned_cols=84 Identities=10% Similarity=0.046 Sum_probs=50.4
Q ss_pred CCCeEEEECCC-cchhcc--CCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCCCCCceeEEEeccchhccCCH
Q 021661 148 PGVSILDLCSS-WVSHFP--PGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP 224 (309)
Q Consensus 148 ~~~~ILDiGcG-~g~~~~--~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~ 224 (309)
.+.+|+=+|+| .|.... ....+.+|+.+|.++.-...+... .+...++ ... -...|+|+.... .
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~-G~~v~~l---~ea---l~~aDVVI~aTG-----~- 277 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMD-GFRVMTM---EEA---AELGDIFVTATG-----N- 277 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhc-CCEecCH---HHH---HhCCCEEEECCC-----C-
Confidence 48899999999 443221 223366999999998654443321 1112233 221 125899987532 2
Q ss_pred HHHHH-HHHhhcccCcEEEEE
Q 021661 225 IEVFK-EMCQVLKPGGLAIVS 244 (309)
Q Consensus 225 ~~~l~-~i~rvLkpGG~lii~ 244 (309)
..++. +....+|+|+.++..
T Consensus 278 ~~vI~~~~~~~mK~GailiNv 298 (425)
T PRK05476 278 KDVITAEHMEAMKDGAILANI 298 (425)
T ss_pred HHHHHHHHHhcCCCCCEEEEc
Confidence 34554 688899999977654
No 369
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=42.62 E-value=55 Score=27.98 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=32.1
Q ss_pred CCCCceeEEEeccchhccC------------CHHHHHHHHHhhcccCcEEEEEecC
Q 021661 204 FEDNSFDVITNVVSVDYLT------------KPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 204 ~~~~sfDlVis~~vl~~l~------------d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
...+..|+|+.+..|+-+. +.++.+..+..+|+|+-.+|..+..
T Consensus 46 l~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~ 101 (183)
T cd01842 46 LEGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAM 101 (183)
T ss_pred ecCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCC
Confidence 4567789999998888763 2356777777778888887776543
No 370
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=42.53 E-value=9.6 Score=30.45 Aligned_cols=52 Identities=27% Similarity=0.325 Sum_probs=31.0
Q ss_pred CcEEEecCCCCCCCCCCCCceeEEEeccchhccCCH----HHHHHHHHhhcccCcEEEE
Q 021661 189 TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP----IEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 189 i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~----~~~l~~i~rvLkpGG~lii 243 (309)
+++..+|+. +.++--...||+|+.-. +.--.+| .++++++.++++|||.+.-
T Consensus 33 L~L~~gDa~--~~l~~l~~~~Da~ylDg-FsP~~nPelWs~e~~~~l~~~~~~~~~l~T 88 (124)
T PF05430_consen 33 LTLWFGDAR--EMLPQLDARFDAWYLDG-FSPAKNPELWSEELFKKLARLSKPGGTLAT 88 (124)
T ss_dssp EEEEES-HH--HHHHHB-T-EEEEEE-S-S-TTTSGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEcHHH--HHHHhCcccCCEEEecC-CCCcCCcccCCHHHHHHHHHHhCCCcEEEE
Confidence 456666762 22332236789888653 2222344 6899999999999997753
No 371
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=42.48 E-value=87 Score=29.02 Aligned_cols=89 Identities=11% Similarity=0.141 Sum_probs=49.7
Q ss_pred CCCCeEEEECCC-cchhc---cCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCC--CCC----C-C-CCCcee---
Q 021661 147 TPGVSILDLCSS-WVSHF---PPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLN--PKL----P-F-EDNSFD--- 210 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~~---~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~--~~l----p-~-~~~sfD--- 210 (309)
.++.+||=+|+| .|... ... .+.+|+++|.+++.++.+++. .+. ..|.... .++ . + ....+|
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~-~G~~vi~~~~~~~~~~~~~~~Ga~~-~i~~~~~~~~~~~~~~~~~t~~~g~d~~~ 242 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKA-MGAAVVAIDIDPEKLEMMKGFGADL-TLNPKDKSAREVKKLIKAFAKARGLRSTG 242 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-cCCeEEEEcCCHHHHHHHHHhCCce-EecCccccHHHHHHHHHhhcccCCCCCCc
Confidence 558899999997 33222 222 356899999999988877653 211 1121000 000 0 0 112354
Q ss_pred -EEEeccchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 211 -VITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 211 -lVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
+|+-+ ... ...++.+.++|++||.+++
T Consensus 243 d~v~d~-----~g~-~~~~~~~~~~l~~~G~iv~ 270 (349)
T TIGR03201 243 WKIFEC-----SGS-KPGQESALSLLSHGGTLVV 270 (349)
T ss_pred CEEEEC-----CCC-hHHHHHHHHHHhcCCeEEE
Confidence 44421 111 3467778889999997754
No 372
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=42.33 E-value=59 Score=29.78 Aligned_cols=86 Identities=19% Similarity=0.147 Sum_probs=50.1
Q ss_pred CCeEEEECCC-cchhc----cCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCCCCCCCceeEEEeccchhccC
Q 021661 149 GVSILDLCSS-WVSHF----PPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT 222 (309)
Q Consensus 149 ~~~ILDiGcG-~g~~~----~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~ 222 (309)
..+|+=+|.| .|..+ ........++|.|.+.+.++.+.+. +.....+. . .-......|+|+.+--+.
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~---~-~~~~~~~aD~VivavPi~--- 75 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVA---G-LAEAAAEADLVIVAVPIE--- 75 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccc---h-hhhhcccCCEEEEeccHH---
Confidence 3578888988 44333 2333445789999999988888653 22221111 0 011223479998765433
Q ss_pred CHHHHHHHHHhhcccCcEE
Q 021661 223 KPIEVFKEMCQVLKPGGLA 241 (309)
Q Consensus 223 d~~~~l~~i~rvLkpGG~l 241 (309)
...++++++...||||-.+
T Consensus 76 ~~~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 76 ATEEVLKELAPHLKKGAIV 94 (279)
T ss_pred HHHHHHHHhcccCCCCCEE
Confidence 3356777777777765544
No 373
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=42.04 E-value=8.4 Score=33.90 Aligned_cols=38 Identities=24% Similarity=0.489 Sum_probs=29.3
Q ss_pred ceecCCCcccccCccccceecccccccccccccccccc
Q 021661 11 QRHRLPPVSTGVSSGYSTCLSCVSGVSKKSDCRRFKAS 48 (309)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (309)
.||+.||---.-..--++|+||..-++..+=.||.|..
T Consensus 234 ~~~~~~psFrqqpppMK~ClsChqqIHRNAPiCPlCKa 271 (286)
T KOG4451|consen 234 NRHRMPPSFRQQPPPMKVCLSCHQQIHRNAPICPLCKA 271 (286)
T ss_pred cccCCCcchhcCCCcchHHHHHHHHHhcCCCCCcchhh
Confidence 36777775554557789999999999988888887653
No 374
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=41.70 E-value=5.3 Score=36.54 Aligned_cols=61 Identities=10% Similarity=0.125 Sum_probs=38.8
Q ss_pred eEEEECCCcchh--ccCCCCCCeEEEEeCCHHHHhhCCCCC-cEEEecCCCCCCCC---CCCCceeEEEec
Q 021661 151 SILDLCSSWVSH--FPPGYKQDRIVGMGMNEEELKRNPVLT-EYVVQDLNLNPKLP---FEDNSFDVITNV 215 (309)
Q Consensus 151 ~ILDiGcG~g~~--~~~~~~~~~v~giD~S~~~l~~a~~~i-~~~~~D~~~~~~lp---~~~~sfDlVis~ 215 (309)
+++|+-||.|.. -.......-+.++|+++...+.-+.|. ....+|+ ..+. ++. .+|+++..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~~~~~~Di---~~~~~~~l~~-~~D~l~gg 68 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFPEVICGDI---TEIDPSDLPK-DVDLLIGG 68 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHTEEEESHG---GGCHHHHHHH-T-SEEEEE
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhcccccccccc---cccccccccc-cceEEEec
Confidence 789996664422 122222447899999999888665543 7778888 4443 333 49999964
No 375
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=41.66 E-value=49 Score=32.09 Aligned_cols=85 Identities=9% Similarity=0.079 Sum_probs=50.3
Q ss_pred CCCCeEEEECCC-cchhcc--CCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCCCCCceeEEEeccchhccCC
Q 021661 147 TPGVSILDLCSS-WVSHFP--PGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK 223 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~~~--~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d 223 (309)
..+.+|+=+|+| .|.... ....+.+|+++|.++.-...+... -+...+. ++. . ...|+|++...
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~-G~~v~~l---eea-l--~~aDVVItaTG------ 259 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMD-GFRVMTM---EEA-A--KIGDIFITATG------ 259 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhc-CCEeCCH---HHH-H--hcCCEEEECCC------
Confidence 348899999999 443222 223367999999888644443322 1222222 111 1 24699877432
Q ss_pred HHHHHH-HHHhhcccCcEEEEE
Q 021661 224 PIEVFK-EMCQVLKPGGLAIVS 244 (309)
Q Consensus 224 ~~~~l~-~i~rvLkpGG~lii~ 244 (309)
...++. +....+|+|+.++..
T Consensus 260 ~~~vI~~~~~~~mK~GailiN~ 281 (406)
T TIGR00936 260 NKDVIRGEHFENMKDGAIVANI 281 (406)
T ss_pred CHHHHHHHHHhcCCCCcEEEEE
Confidence 244554 488899999987764
No 376
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=41.65 E-value=61 Score=29.70 Aligned_cols=84 Identities=20% Similarity=0.146 Sum_probs=48.5
Q ss_pred CeEEEECCC-cchhcc----CCCCCCeEEEEeCCHHHHhhCCCC-C-cEEEecCCCCCCCCCCCCceeEEEeccchhccC
Q 021661 150 VSILDLCSS-WVSHFP----PGYKQDRIVGMGMNEEELKRNPVL-T-EYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT 222 (309)
Q Consensus 150 ~~ILDiGcG-~g~~~~----~~~~~~~v~giD~S~~~l~~a~~~-i-~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~ 222 (309)
.+|.=||+| .|..+. ......+|+++|.+++.++.+++. + .....+. ... -...|+|+.+.-...
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~---~~~---~~~aDvViiavp~~~-- 78 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSA---AEA---VKGADLVILCVPVGA-- 78 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCH---HHH---hcCCCEEEECCCHHH--
Confidence 578888998 343222 111124899999999877766542 1 1111111 111 134799887754332
Q ss_pred CHHHHHHHHHhhcccCcEEE
Q 021661 223 KPIEVFKEMCQVLKPGGLAI 242 (309)
Q Consensus 223 d~~~~l~~i~rvLkpGG~li 242 (309)
...+++++...+++|..++
T Consensus 79 -~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 79 -SGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred -HHHHHHHHHhhCCCCCEEE
Confidence 3566777777888887543
No 377
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.79 E-value=1.6e+02 Score=25.67 Aligned_cols=88 Identities=15% Similarity=0.105 Sum_probs=60.6
Q ss_pred CCCCeEEEECCC-cchhccCCC-CCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCCCCCceeEEEeccchhccCCH
Q 021661 147 TPGVSILDLCSS-WVSHFPPGY-KQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP 224 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~~~~~~-~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~ 224 (309)
..+.+||=+|.= ||.....+. ...+|+.+|+.+.|-...+.++.|... +.+..+.+|+|+-...|--+. |
T Consensus 43 ~E~~~vli~G~YltG~~~a~~Ls~~~~vtv~Di~p~~r~~lp~~v~Fr~~-------~~~~~G~~DlivDlTGlGG~~-P 114 (254)
T COG4017 43 EEFKEVLIFGVYLTGNYTAQMLSKADKVTVVDIHPFMRGFLPNNVKFRNL-------LKFIRGEVDLIVDLTGLGGIE-P 114 (254)
T ss_pred cCcceEEEEEeeehhHHHHHHhcccceEEEecCCHHHHhcCCCCccHhhh-------cCCCCCceeEEEeccccCCCC-H
Confidence 347899999984 665554443 367999999999998888877666433 344567899999877776653 2
Q ss_pred HHHHHHHHhhcccCcEEEEEecCc
Q 021661 225 IEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 225 ~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
+..+-++| +.++++.|..
T Consensus 115 -----e~L~~fnp-~vfiVEdP~g 132 (254)
T COG4017 115 -----EFLAKFNP-KVFIVEDPKG 132 (254)
T ss_pred -----HHHhccCC-ceEEEECCCC
Confidence 23444555 5677776654
No 378
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=40.70 E-value=98 Score=29.01 Aligned_cols=92 Identities=13% Similarity=0.186 Sum_probs=53.0
Q ss_pred CCCCeEEEECCC-cchh---ccCCCCCC-eEEEEeCCHHHHhhCCCC-CcEEEecCCC-CCC----C-CCCCCceeEEEe
Q 021661 147 TPGVSILDLCSS-WVSH---FPPGYKQD-RIVGMGMNEEELKRNPVL-TEYVVQDLNL-NPK----L-PFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~---~~~~~~~~-~v~giD~S~~~l~~a~~~-i~~~~~D~~~-~~~----l-p~~~~sfDlVis 214 (309)
.++.+||=.|+| .|.. ++.. .+. +|+++|.+++-++.+++. .+. ..|... ... + ....+.+|+|+-
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~-~G~~~Vi~~~~~~~~~~~a~~~Ga~~-~i~~~~~~~~~~~~v~~~~~~g~d~vid 261 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARM-AKASRIIAIDINPAKFELAKKLGATD-CVNPNDYDKPIQEVIVEITDGGVDYSFE 261 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEcCCHHHHHHHHHhCCCe-EEcccccchhHHHHHHHHhCCCCCEEEE
Confidence 457899999997 3322 2222 345 799999999988877653 211 112200 000 0 011235888875
Q ss_pred ccchhccCCHHHHHHHHHhhcccC-cEEE-EEec
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPG-GLAI-VSFS 246 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpG-G~li-i~~~ 246 (309)
... . ...+.+..+.|++| |.++ +...
T Consensus 262 ~~G-----~-~~~~~~~~~~~~~~~G~~v~~g~~ 289 (368)
T TIGR02818 262 CIG-----N-VNVMRAALECCHKGWGESIIIGVA 289 (368)
T ss_pred CCC-----C-HHHHHHHHHHhhcCCCeEEEEecc
Confidence 432 1 34677888899986 8654 5443
No 379
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=39.87 E-value=22 Score=34.16 Aligned_cols=66 Identities=17% Similarity=0.105 Sum_probs=42.9
Q ss_pred CeEEEECCC-cchhcc---CCCCCCeEEEEeCCHHHHhhCCC----CCcEEEecCCCCCCCC-CCCCceeEEEecc
Q 021661 150 VSILDLCSS-WVSHFP---PGYKQDRIVGMGMNEEELKRNPV----LTEYVVQDLNLNPKLP-FEDNSFDVITNVV 216 (309)
Q Consensus 150 ~~ILDiGcG-~g~~~~---~~~~~~~v~giD~S~~~l~~a~~----~i~~~~~D~~~~~~lp-~~~~sfDlVis~~ 216 (309)
++||=|||| .|+... ......+|+..|-|.+..+.+.. +++..+.|+.....+. +- ..+|+|++..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li-~~~d~VIn~~ 76 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALI-KDFDLVINAA 76 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHH-hcCCEEEEeC
Confidence 479999998 444332 22333799999999887776644 4889999993221221 11 2369999764
No 380
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=39.71 E-value=64 Score=27.66 Aligned_cols=96 Identities=19% Similarity=0.088 Sum_probs=53.7
Q ss_pred CCeEEEECCC--cchhccC--CCCCCeEEEEeCCHHHHhhC------CCCCcEEEecCCCCCCCC-------CCCCceeE
Q 021661 149 GVSILDLCSS--WVSHFPP--GYKQDRIVGMGMNEEELKRN------PVLTEYVVQDLNLNPKLP-------FEDNSFDV 211 (309)
Q Consensus 149 ~~~ILDiGcG--~g~~~~~--~~~~~~v~giD~S~~~l~~a------~~~i~~~~~D~~~~~~lp-------~~~~sfDl 211 (309)
+.+||=.|++ .|..+.. ...+.+|++++-+++-++.. ..+++++++|+...+.+. ...+..|.
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ 84 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAIDG 84 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCCE
Confidence 6789999885 4433322 23467999999988755432 124678888883211110 01134687
Q ss_pred EEeccchhccC-----------------CHHHHHHHHHhhcccCcEEEEE
Q 021661 212 ITNVVSVDYLT-----------------KPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 212 Vis~~vl~~l~-----------------d~~~~l~~i~rvLkpGG~lii~ 244 (309)
|+.+....... -+..+++.+.+.++++|.+++.
T Consensus 85 ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ 134 (238)
T PRK05786 85 LVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLV 134 (238)
T ss_pred EEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEE
Confidence 77655322110 1123456666777888866554
No 381
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=39.61 E-value=19 Score=33.33 Aligned_cols=27 Identities=30% Similarity=0.556 Sum_probs=20.9
Q ss_pred cCCHHHHHHHHHhhcccCcEE-EEEecC
Q 021661 221 LTKPIEVFKEMCQVLKPGGLA-IVSFSN 247 (309)
Q Consensus 221 l~d~~~~l~~i~rvLkpGG~l-ii~~~~ 247 (309)
+...+.+|..+..+|+|||.+ ||++..
T Consensus 212 l~~L~~~L~~~~~~L~~gGrl~visfHS 239 (296)
T PRK00050 212 LEELERALEAALDLLKPGGRLAVISFHS 239 (296)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEecCc
Confidence 345678999999999999965 666553
No 382
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=39.26 E-value=1.2e+02 Score=28.01 Aligned_cols=87 Identities=14% Similarity=0.126 Sum_probs=50.5
Q ss_pred CCCeEEEECCC-cchh---ccCCCCCC-eEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCCC---------CCCCceeEE
Q 021661 148 PGVSILDLCSS-WVSH---FPPGYKQD-RIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLP---------FEDNSFDVI 212 (309)
Q Consensus 148 ~~~~ILDiGcG-~g~~---~~~~~~~~-~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~lp---------~~~~sfDlV 212 (309)
++.+||=.|+| .|.. +... .+. +|++++.+++-.+.+++. ++.+ .+... ...+ .....+|+|
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~-~G~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~-~~~~~~~~~i~~~~~~~~~d~v 253 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKL-AGARRVIVIDGSPERLELAREFGADAT-IDIDE-LPDPQRRAIVRDITGGRGADVV 253 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEcCCHHHHHHHHHcCCCeE-EcCcc-cccHHHHHHHHHHhCCCCCcEE
Confidence 57788888887 3322 2222 355 899999988877665432 2111 12100 0000 122458999
Q ss_pred EeccchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 213 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 213 is~~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
+-...- ...+.+..+.|+++|.++.
T Consensus 254 id~~g~------~~~~~~~~~~l~~~G~~v~ 278 (361)
T cd08231 254 IEASGH------PAAVPEGLELLRRGGTYVL 278 (361)
T ss_pred EECCCC------hHHHHHHHHHhccCCEEEE
Confidence 864321 2467788899999997764
No 383
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=38.86 E-value=1.2e+02 Score=28.33 Aligned_cols=89 Identities=13% Similarity=0.114 Sum_probs=52.1
Q ss_pred CCCCeEEEECC-C-cchhcc--CCCCCCeEEEEeCCHHHHhhCC-CC-CcEEEecCCCCCCC-----CCCCCceeEEEec
Q 021661 147 TPGVSILDLCS-S-WVSHFP--PGYKQDRIVGMGMNEEELKRNP-VL-TEYVVQDLNLNPKL-----PFEDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGc-G-~g~~~~--~~~~~~~v~giD~S~~~l~~a~-~~-i~~~~~D~~~~~~l-----p~~~~sfDlVis~ 215 (309)
.++.+||=.|+ | .|.... ....+.+|++++.+++-.+.++ +. .+.+. |.....++ ....+.+|+|+-.
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi-~~~~~~~~~~~i~~~~~~gvD~v~d~ 235 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAF-NYKEEPDLDAALKRYFPEGIDIYFDN 235 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEE-ECCCcccHHHHHHHHCCCCcEEEEEC
Confidence 45889999988 4 443321 1223678999999988777654 22 22211 11000011 0112358988854
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
.. ...+..+.+.|++||.+++
T Consensus 236 vG-------~~~~~~~~~~l~~~G~iv~ 256 (348)
T PLN03154 236 VG-------GDMLDAALLNMKIHGRIAV 256 (348)
T ss_pred CC-------HHHHHHHHHHhccCCEEEE
Confidence 32 2467888999999997764
No 384
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=38.74 E-value=64 Score=30.26 Aligned_cols=89 Identities=13% Similarity=0.047 Sum_probs=47.3
Q ss_pred CCCeEEEECCC-cchhcc--CCCCCCeEEEEeCCHHHHh-hCCCC-CcEEEecCCCCCCCCCCCCceeEEEeccchhccC
Q 021661 148 PGVSILDLCSS-WVSHFP--PGYKQDRIVGMGMNEEELK-RNPVL-TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT 222 (309)
Q Consensus 148 ~~~~ILDiGcG-~g~~~~--~~~~~~~v~giD~S~~~l~-~a~~~-i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~ 222 (309)
++.+||=.|+| .|.... ....+.+|+++|.+++... .+++. .+.+. |......+....+.+|+|+-...
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi-~~~~~~~~~~~~~~~D~vid~~g----- 256 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFL-VSTDPEKMKAAIGTMDYIIDTVS----- 256 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEE-cCCCHHHHHhhcCCCCEEEECCC-----
Confidence 47788889997 343221 1123568888888765432 22222 22111 11000011101124788875432
Q ss_pred CHHHHHHHHHhhcccCcEEEE
Q 021661 223 KPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 223 d~~~~l~~i~rvLkpGG~lii 243 (309)
. ...+.+..+.|++||.++.
T Consensus 257 ~-~~~~~~~~~~l~~~G~iv~ 276 (360)
T PLN02586 257 A-VHALGPLLGLLKVNGKLIT 276 (360)
T ss_pred C-HHHHHHHHHHhcCCcEEEE
Confidence 1 2467888999999997654
No 385
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=36.97 E-value=1.1e+02 Score=28.61 Aligned_cols=89 Identities=17% Similarity=0.162 Sum_probs=51.6
Q ss_pred CCCCeEEEECCC-cchh---ccCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCC-----CCCCCceeEEEecc
Q 021661 147 TPGVSILDLCSS-WVSH---FPPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKL-----PFEDNSFDVITNVV 216 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~l-----p~~~~sfDlVis~~ 216 (309)
.++.+||=.|+| .|.. +........++++|.++...+.+++. ...+ .+... ..+ ......+|+|+-..
T Consensus 185 ~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~-i~~~~-~~~~~~v~~~~~~~~d~vld~~ 262 (365)
T cd08278 185 RPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHV-INPKE-EDLVAAIREITGGGVDYALDTT 262 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEE-ecCCC-cCHHHHHHHHhCCCCcEEEECC
Confidence 457888888886 3322 22333223699999998877765543 2211 12100 111 01134589988643
Q ss_pred chhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 217 SVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 217 vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
.- ...+.++.+.|+++|.++.
T Consensus 263 g~------~~~~~~~~~~l~~~G~~v~ 283 (365)
T cd08278 263 GV------PAVIEQAVDALAPRGTLAL 283 (365)
T ss_pred CC------cHHHHHHHHHhccCCEEEE
Confidence 21 2467889999999997664
No 386
>PRK08324 short chain dehydrogenase; Validated
Probab=36.76 E-value=57 Score=33.69 Aligned_cols=97 Identities=14% Similarity=0.136 Sum_probs=56.3
Q ss_pred CCCeEEEECCC--cchhcc--CCCCCCeEEEEeCCHHHHhhCCC------CCcEEEecCCCCCCCC--C-----CCCcee
Q 021661 148 PGVSILDLCSS--WVSHFP--PGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLP--F-----EDNSFD 210 (309)
Q Consensus 148 ~~~~ILDiGcG--~g~~~~--~~~~~~~v~giD~S~~~l~~a~~------~i~~~~~D~~~~~~lp--~-----~~~sfD 210 (309)
++.+||=.|++ .|..+. ....+.+|+.+|.++..++...+ .+.+++.|+.....+. + ..+.+|
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~iD 500 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGVD 500 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 46789988864 443322 22346799999999876543221 4668888883211111 1 124689
Q ss_pred EEEeccchhccCC-------------------HHHHHHHHHhhccc---CcEEEEE
Q 021661 211 VITNVVSVDYLTK-------------------PIEVFKEMCQVLKP---GGLAIVS 244 (309)
Q Consensus 211 lVis~~vl~~l~d-------------------~~~~l~~i~rvLkp---GG~lii~ 244 (309)
+|+.+........ ...+++.+.+.+++ ||.+++.
T Consensus 501 vvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~v 556 (681)
T PRK08324 501 IVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFI 556 (681)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 9998765322110 23456667777776 6766554
No 387
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=36.48 E-value=1.7e+02 Score=26.43 Aligned_cols=88 Identities=14% Similarity=0.083 Sum_probs=51.7
Q ss_pred CCCCeEEEECC-C-cchhcc--CCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCC-----CCCCCceeEEEecc
Q 021661 147 TPGVSILDLCS-S-WVSHFP--PGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKL-----PFEDNSFDVITNVV 216 (309)
Q Consensus 147 ~~~~~ILDiGc-G-~g~~~~--~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~l-----p~~~~sfDlVis~~ 216 (309)
.++.+||=.|+ | .|.... ....+.+|++++-+++-.+.+++. ++.+ .|... .++ ....+.+|+|+-..
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~v-i~~~~-~~~~~~v~~~~~~gvd~vld~~ 219 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAV-FNYKT-VSLEEALKEAAPDGIDCYFDNV 219 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEE-EeCCC-ccHHHHHHHHCCCCcEEEEECC
Confidence 45789998875 4 443321 112366899999988877766543 2211 12210 111 11224589888543
Q ss_pred chhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 217 SVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 217 vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
. ...+....+.|+++|.++.
T Consensus 220 g-------~~~~~~~~~~l~~~G~iv~ 239 (329)
T cd08294 220 G-------GEFSSTVLSHMNDFGRVAV 239 (329)
T ss_pred C-------HHHHHHHHHhhccCCEEEE
Confidence 2 2567889999999997754
No 388
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=36.22 E-value=1.3e+02 Score=27.54 Aligned_cols=90 Identities=14% Similarity=0.238 Sum_probs=52.2
Q ss_pred CCCCeEEEECCC-cchhc--cCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCC---CCC--CCCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSS-WVSHF--PPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLN---PKL--PFEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~~--~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~---~~l--p~~~~sfDlVis~~v 217 (309)
.++.+||-.|+| .|..+ .....+.+|+++..+++..+..++. .+. ..|.... +.+ ......+|+|+....
T Consensus 158 ~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~~~-v~~~~~~~~~~~l~~~~~~~~vd~vld~~g 236 (337)
T cd08261 158 TAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGADD-TINVGDEDVAARLRELTDGEGADVVIDATG 236 (337)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCCCE-EecCcccCHHHHHHHHhCCCCCCEEEECCC
Confidence 457899999876 33322 1123467899998888877765432 111 1122000 001 012345899987532
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
-...+.++.+.|+++|.++.
T Consensus 237 ------~~~~~~~~~~~l~~~G~~i~ 256 (337)
T cd08261 237 ------NPASMEEAVELVAHGGRVVL 256 (337)
T ss_pred ------CHHHHHHHHHHHhcCCEEEE
Confidence 13467888999999997653
No 389
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=35.21 E-value=1.3e+02 Score=27.15 Aligned_cols=85 Identities=13% Similarity=0.143 Sum_probs=51.4
Q ss_pred CCCCeEEEECCC-cchhc--cCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCCCCCCCceeEEEeccchhccC
Q 021661 147 TPGVSILDLCSS-WVSHF--PPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT 222 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~~--~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~ 222 (309)
.++.+||=.||| .|..+ .....+.+|++++.+++..+.+++. ++. ..+. ... ....+|+++....
T Consensus 166 ~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g~~~-~~~~---~~~--~~~~vD~vi~~~~----- 234 (329)
T cd08298 166 KPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARELGADW-AGDS---DDL--PPEPLDAAIIFAP----- 234 (329)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhCCcE-Eecc---Ccc--CCCcccEEEEcCC-----
Confidence 446777778887 33222 1223467999999998877766432 211 1122 111 2345888775321
Q ss_pred CHHHHHHHHHhhcccCcEEEE
Q 021661 223 KPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 223 d~~~~l~~i~rvLkpGG~lii 243 (309)
....++++.+.|+++|.+++
T Consensus 235 -~~~~~~~~~~~l~~~G~~v~ 254 (329)
T cd08298 235 -VGALVPAALRAVKKGGRVVL 254 (329)
T ss_pred -cHHHHHHHHHHhhcCCEEEE
Confidence 12578899999999998764
No 390
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=34.43 E-value=45 Score=25.07 Aligned_cols=47 Identities=15% Similarity=0.299 Sum_probs=27.3
Q ss_pred CCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHh
Q 021661 206 DNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAI 255 (309)
Q Consensus 206 ~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~ 255 (309)
...||+++... .+-+ -...|..+.-.++-||++++-+++...|....
T Consensus 9 G~e~~~~i~d~-~~g~--~pnal~a~~gtv~gGGllill~p~~~~w~~~~ 55 (92)
T PF08351_consen 9 GQEFDLLIFDA-FEGF--DPNALAALAGTVRGGGLLILLLPPWESWPQLP 55 (92)
T ss_dssp T--BSSEEEE--SS-----HHHHHHHHTTB-TT-EEEEEES-GGGTTTS-
T ss_pred CCccCEEEEEc-cCCC--CHHHHHHHhcceecCeEEEEEcCCHHHhhhcc
Confidence 45688887654 1111 25788899999999999999888755444443
No 391
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=34.28 E-value=1.5e+02 Score=27.59 Aligned_cols=89 Identities=15% Similarity=0.217 Sum_probs=50.9
Q ss_pred CCCCeEEEECCC-cchh---ccCCCCCC-eEEEEeCCHHHHhhCCCC-CcEEEecCCCC-----CCC-CCCCCceeEEEe
Q 021661 147 TPGVSILDLCSS-WVSH---FPPGYKQD-RIVGMGMNEEELKRNPVL-TEYVVQDLNLN-----PKL-PFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~---~~~~~~~~-~v~giD~S~~~l~~a~~~-i~~~~~D~~~~-----~~l-p~~~~sfDlVis 214 (309)
.++.+||=+|+| .|.. +.... +. +|+++|.+++-++.+++. ++.+ .|.... +.+ ....+.+|+|+-
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~-G~~~Vi~~~~~~~~~~~~~~~ga~~~-i~~~~~~~~~~~~~~~~~~~g~d~vid 260 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIA-GASRIIGVDINEDKFEKAKEFGATDF-INPKDSDKPVSEVIREMTGGGVDYSFE 260 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHcCCCcE-eccccccchHHHHHHHHhCCCCCEEEE
Confidence 457899988987 3322 22333 44 799999998888776543 1111 111000 000 011245898885
Q ss_pred ccchhccCCHHHHHHHHHhhcccC-cEEEE
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPG-GLAIV 243 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpG-G~lii 243 (309)
... . ...+.+..+.|+++ |.+++
T Consensus 261 ~~g-----~-~~~~~~~~~~l~~~~G~~v~ 284 (365)
T cd08277 261 CTG-----N-ADLMNEALESTKLGWGVSVV 284 (365)
T ss_pred CCC-----C-hHHHHHHHHhcccCCCEEEE
Confidence 432 1 25678888899886 86654
No 392
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=34.06 E-value=1.6e+02 Score=26.37 Aligned_cols=88 Identities=19% Similarity=0.266 Sum_probs=50.1
Q ss_pred CCCCeEEEECCC--cchhc--cCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCC------CCCCCceeEEEec
Q 021661 147 TPGVSILDLCSS--WVSHF--PPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKL------PFEDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG--~g~~~--~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~l------p~~~~sfDlVis~ 215 (309)
.++.+||=.|++ .|... .....+.+++.++.+++..+.++.. ... ..|... ... ......+|+++.+
T Consensus 165 ~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~d~~i~~ 242 (342)
T cd08266 165 RPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKELGADY-VIDYRK-EDFVREVRELTGKRGVDVVVEH 242 (342)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCe-EEecCC-hHHHHHHHHHhCCCCCcEEEEC
Confidence 447789988875 33322 1123467899999988776655332 111 112200 000 0123468999876
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
..- ..+.++.+.|+++|.++.
T Consensus 243 ~g~-------~~~~~~~~~l~~~G~~v~ 263 (342)
T cd08266 243 VGA-------ATWEKSLKSLARGGRLVT 263 (342)
T ss_pred CcH-------HHHHHHHHHhhcCCEEEE
Confidence 432 346777889999997654
No 393
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=33.75 E-value=34 Score=27.52 Aligned_cols=31 Identities=13% Similarity=0.070 Sum_probs=17.4
Q ss_pred EECCCcc--hhcc-----CCCCCCeEEEEeCCHHHHhh
Q 021661 154 DLCSSWV--SHFP-----PGYKQDRIVGMGMNEEELKR 184 (309)
Q Consensus 154 DiGcG~g--~~~~-----~~~~~~~v~giD~S~~~l~~ 184 (309)
|||+..| .... ...+..+|+++|+++...+.
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~ 38 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEK 38 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHH
Confidence 8999887 3221 34567899999999997553
No 394
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=33.66 E-value=48 Score=30.17 Aligned_cols=36 Identities=17% Similarity=-0.039 Sum_probs=24.8
Q ss_pred CeEEEECCC-cchhc--cCCCCCCeEEEEeCCHHHHhhC
Q 021661 150 VSILDLCSS-WVSHF--PPGYKQDRIVGMGMNEEELKRN 185 (309)
Q Consensus 150 ~~ILDiGcG-~g~~~--~~~~~~~~v~giD~S~~~l~~a 185 (309)
.+|.=||+| .|..+ ..+..+.+|+.+|.+++.++.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~ 42 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNA 42 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHH
Confidence 367778998 44322 2233466999999999988754
No 395
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=33.50 E-value=1.6e+02 Score=27.43 Aligned_cols=89 Identities=10% Similarity=0.143 Sum_probs=51.5
Q ss_pred CCCCeEEEECCC-cchh---ccCCCCCC-eEEEEeCCHHHHhhCCCC-CcEEEecCCCC-CCC-----CCCCCceeEEEe
Q 021661 147 TPGVSILDLCSS-WVSH---FPPGYKQD-RIVGMGMNEEELKRNPVL-TEYVVQDLNLN-PKL-----PFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~---~~~~~~~~-~v~giD~S~~~l~~a~~~-i~~~~~D~~~~-~~l-----p~~~~sfDlVis 214 (309)
.++.+||=.|+| .|.. +.... +. +|+++|.+++-++.+++. ... ..|.... ..+ ....+.+|+|+-
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak~~-G~~~vi~~~~~~~~~~~~~~~Ga~~-~i~~~~~~~~~~~~v~~~~~~~~d~vid 263 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGARIR-GASRIIGVDLNPSKFEQAKKFGVTE-FVNPKDHDKPVQEVIAEMTGGGVDYSFE 263 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcCCce-EEcccccchhHHHHHHHHhCCCCCEEEE
Confidence 458899999987 3322 22333 44 799999999888877653 111 1111000 000 011235888875
Q ss_pred ccchhccCCHHHHHHHHHhhcccC-cEEEE
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPG-GLAIV 243 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpG-G~lii 243 (309)
... ....+..+.+.+++| |.+++
T Consensus 264 ~~G------~~~~~~~~~~~~~~~~g~~v~ 287 (369)
T cd08301 264 CTG------NIDAMISAFECVHDGWGVTVL 287 (369)
T ss_pred CCC------ChHHHHHHHHHhhcCCCEEEE
Confidence 421 135677788899996 87654
No 396
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=33.26 E-value=2.2e+02 Score=25.56 Aligned_cols=98 Identities=8% Similarity=0.005 Sum_probs=58.6
Q ss_pred HHHHHhhCCCCCCCCCeEEEECCC-cchhccCCC-CCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCCCCCceeEE
Q 021661 135 TKYYSEVFPPSNTPGVSILDLCSS-WVSHFPPGY-KQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVI 212 (309)
Q Consensus 135 ~~~~~~~l~~~~~~~~~ILDiGcG-~g~~~~~~~-~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~~~sfDlV 212 (309)
.+.+..+++. ..-.++|=+|.= +|..++... ..++|+.+|+.|.+.+....++.|...- ..+ ...+|+|
T Consensus 30 a~ai~~~le~--~~~k~~lI~G~YltG~~iA~~L~~~~eV~lvDI~p~lk~ll~~~i~F~~~~----~~~---~~~~DlI 100 (252)
T PF06690_consen 30 ANAIKYWLEG--EEFKQALIFGAYLTGNFIASALSKKCEVTLVDIHPHLKELLNENIKFMEFR----NGL---EGNPDLI 100 (252)
T ss_pred HHHHHHHhcc--cccceEEEEEEEeehHHHHHHhccCceEEEEeCcHHHHHHhcCCCceeecc----CCC---CCCCCEE
Confidence 3444455543 223489999873 554443332 2349999999999999887788887332 222 2368999
Q ss_pred EeccchhccCCHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 213 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 213 is~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
+=...|--+. + + ..+-+. ...++++.|..
T Consensus 101 ID~TGlGGv~-~-~----~Ls~~~-p~v~IVEdP~~ 129 (252)
T PF06690_consen 101 IDTTGLGGVD-P-D----FLSKFN-PKVFIVEDPKG 129 (252)
T ss_pred EECCCCCCCC-H-H----HHhccC-CCEEEEECCCc
Confidence 9776666552 1 1 223333 24666666643
No 397
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=33.22 E-value=97 Score=31.15 Aligned_cols=93 Identities=6% Similarity=-0.113 Sum_probs=56.5
Q ss_pred CeEEEECCC-cchhccCC--CCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCCC-CCCCceeEEEeccchhccCCH
Q 021661 150 VSILDLCSS-WVSHFPPG--YKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLP-FEDNSFDVITNVVSVDYLTKP 224 (309)
Q Consensus 150 ~~ILDiGcG-~g~~~~~~--~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~lp-~~~~sfDlVis~~vl~~l~d~ 224 (309)
.+|+=+||| .|..+... ..+.+|+.+|.+++.++.+++. ...+.+|+...+-+. ..-+..|.++... +|.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~-----~~~ 492 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTI-----PNG 492 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEc-----CCh
Confidence 688889999 55544332 2356899999999998877654 789999994321111 1224578665432 122
Q ss_pred H--HHHHHHHhhcccCcEEEEEecC
Q 021661 225 I--EVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 225 ~--~~l~~i~rvLkpGG~lii~~~~ 247 (309)
. ..+-...|.+.|+-.++....+
T Consensus 493 ~~~~~iv~~~~~~~~~~~iiar~~~ 517 (558)
T PRK10669 493 YEAGEIVASAREKRPDIEIIARAHY 517 (558)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEECC
Confidence 1 1233344556777766665544
No 398
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=33.10 E-value=78 Score=28.49 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.0
Q ss_pred HHHHHHHHhhcccCcEEEEEecC
Q 021661 225 IEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 225 ~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
..+|+.++..|.|||.++|...+
T Consensus 192 ~~aLe~lyprl~~GGiIi~DDY~ 214 (248)
T PF05711_consen 192 KDALEFLYPRLSPGGIIIFDDYG 214 (248)
T ss_dssp HHHHHHHGGGEEEEEEEEESSTT
T ss_pred HHHHHHHHhhcCCCeEEEEeCCC
Confidence 68999999999999999997443
No 399
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=33.06 E-value=63 Score=31.32 Aligned_cols=98 Identities=11% Similarity=0.039 Sum_probs=49.8
Q ss_pred CCCCeEEEECCC-cchhc---cCCCCCCeEEEEeCCHHHHh-hCCCC-CcEEEecCCCCCCCCCCCCceeEEEeccchhc
Q 021661 147 TPGVSILDLCSS-WVSHF---PPGYKQDRIVGMGMNEEELK-RNPVL-TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 220 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~~---~~~~~~~~v~giD~S~~~l~-~a~~~-i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~ 220 (309)
.++.+|+=+|+| .|... .......+|+.++.+++-.+ .++.. ...+ +. .++.-.-..+|+|++...-.+
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~--~~---~~~~~~l~~aDvVI~aT~s~~ 254 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAI--PL---DELPEALAEADIVISSTGAPH 254 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEe--eH---HHHHHHhccCCEEEECCCCCC
Confidence 347899999999 44222 12222348999999976543 33321 1221 11 111111135899998764433
Q ss_pred cCCHHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 221 LTKPIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 221 l~d~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
.--....++.+.+.=+.++.+++....|.
T Consensus 255 ~~i~~~~l~~~~~~~~~~~~vviDla~Pr 283 (423)
T PRK00045 255 PIIGKGMVERALKARRHRPLLLVDLAVPR 283 (423)
T ss_pred cEEcHHHHHHHHhhccCCCeEEEEeCCCC
Confidence 22223334443221112457888876643
No 400
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=32.73 E-value=2.1e+02 Score=26.03 Aligned_cols=89 Identities=15% Similarity=0.118 Sum_probs=51.6
Q ss_pred CCCCeEEEECC-C-cchhcc--CCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCC-----CCCCCceeEEEecc
Q 021661 147 TPGVSILDLCS-S-WVSHFP--PGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKL-----PFEDNSFDVITNVV 216 (309)
Q Consensus 147 ~~~~~ILDiGc-G-~g~~~~--~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~l-----p~~~~sfDlVis~~ 216 (309)
.++.+||=.|+ | .|.... ....+.+|++++.+++-.+.+++. .+.+ .|....... ....+.+|+|+-..
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~v-i~~~~~~~~~~~~~~~~~~gvdvv~d~~ 215 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVA-FNYKTVKSLEETLKKASPDGYDCYFDNV 215 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEE-EeccccccHHHHHHHhCCCCeEEEEECC
Confidence 45889998885 4 443321 122466899999998877776543 2211 111000011 01224689888543
Q ss_pred chhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 217 SVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 217 vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
. . ..+.++.+.|++||.++.
T Consensus 216 G-----~--~~~~~~~~~l~~~G~iv~ 235 (325)
T TIGR02825 216 G-----G--EFSNTVIGQMKKFGRIAI 235 (325)
T ss_pred C-----H--HHHHHHHHHhCcCcEEEE
Confidence 2 1 345788999999997764
No 401
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=32.37 E-value=29 Score=32.25 Aligned_cols=84 Identities=15% Similarity=0.050 Sum_probs=54.9
Q ss_pred CCeEEEECCCcchhcc---CCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEecc
Q 021661 149 GVSILDLCSSWVSHFP---PGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVV 216 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~---~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis~~ 216 (309)
+..|.|+=+|.|-+.. -......|.++|.+|..++..+++ +....+|- .. +-++...|-|....
T Consensus 195 ~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~---R~-~~~~~~AdrVnLGL 270 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDN---RN-PKPRLRADRVNLGL 270 (351)
T ss_pred cchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccc---cc-cCccccchheeecc
Confidence 5799999888774332 122345899999999988865543 34455554 33 33455667766533
Q ss_pred chhccCCHHHHHHHHHhhcccCcE
Q 021661 217 SVDYLTKPIEVFKEMCQVLKPGGL 240 (309)
Q Consensus 217 vl~~l~d~~~~l~~i~rvLkpGG~ 240 (309)
++.-++-.--+.++|||.|-
T Consensus 271 ----lPSse~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 271 ----LPSSEQGWPTAIKALKPEGG 290 (351)
T ss_pred ----ccccccchHHHHHHhhhcCC
Confidence 55666777778889999664
No 402
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=32.37 E-value=62 Score=29.38 Aligned_cols=89 Identities=15% Similarity=0.191 Sum_probs=50.2
Q ss_pred CeEEEECCC-cchh--ccCCCCCCeEEEEeCCHHHHhhCCCC-------------Cc----------E-EEecCCCCCCC
Q 021661 150 VSILDLCSS-WVSH--FPPGYKQDRIVGMGMNEEELKRNPVL-------------TE----------Y-VVQDLNLNPKL 202 (309)
Q Consensus 150 ~~ILDiGcG-~g~~--~~~~~~~~~v~giD~S~~~l~~a~~~-------------i~----------~-~~~D~~~~~~l 202 (309)
.+|.=||+| .|.. ...+..+.+|+..|.+++.++.+.+. +. . ...|+ +.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~---~~~ 81 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDL---EDL 81 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCH---HHh
Confidence 467778998 4422 22334467999999999887754321 00 1 11122 111
Q ss_pred CCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 203 PFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 203 p~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
...|+|+.+- -+...-...+++++...++|+..++..++
T Consensus 82 ----~~aD~Vieav-pe~~~~k~~~~~~l~~~~~~~~ii~s~ts 120 (292)
T PRK07530 82 ----ADCDLVIEAA-TEDETVKRKIFAQLCPVLKPEAILATNTS 120 (292)
T ss_pred ----cCCCEEEEcC-cCCHHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence 2467777652 11111134678889999999876653333
No 403
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=32.11 E-value=1.2e+02 Score=26.76 Aligned_cols=64 Identities=11% Similarity=0.001 Sum_probs=38.1
Q ss_pred CCCeEEEECCCcch-----hccCCCCCCeEEEEeCCHHHHhhCCC-CCcEEEecCCCCCCCCCCCCceeEEEecc
Q 021661 148 PGVSILDLCSSWVS-----HFPPGYKQDRIVGMGMNEEELKRNPV-LTEYVVQDLNLNPKLPFEDNSFDVITNVV 216 (309)
Q Consensus 148 ~~~~ILDiGcG~g~-----~~~~~~~~~~v~giD~S~~~l~~a~~-~i~~~~~D~~~~~~lp~~~~sfDlVis~~ 216 (309)
++.+||=||+|... .+........|++-++++++.+.++. .+++++.+. +.-.+ ..+++|++..
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~---~~~dl--~g~~LViaAT 93 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNY---DKEFI--KDKHLIVIAT 93 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCC---ChHHh--CCCcEEEECC
Confidence 47899999999432 22222222345555888887766543 477777666 32222 2367777753
No 404
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=32.03 E-value=68 Score=28.99 Aligned_cols=87 Identities=9% Similarity=0.033 Sum_probs=48.8
Q ss_pred eEEEECCC-cchhccC--CCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCCCCCceeEEEeccchhccCCHHHH
Q 021661 151 SILDLCSS-WVSHFPP--GYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEV 227 (309)
Q Consensus 151 ~ILDiGcG-~g~~~~~--~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~~~~ 227 (309)
+|.=||+| .|..+.. ...+.+|+++|.+++.++.+.+.-....... .... -...|+|+.+.-... ..++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~----~~~~-~~~aDlVilavp~~~---~~~~ 73 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEAST----DLSL-LKDCDLVILALPIGL---LLPP 73 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccC----CHhH-hcCCCEEEEcCCHHH---HHHH
Confidence 46667988 4433322 2235689999999988877654311101110 1111 134789887754332 2456
Q ss_pred HHHHHhhcccCcEEEEEec
Q 021661 228 FKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 228 l~~i~rvLkpGG~lii~~~ 246 (309)
++++...++|+ .++..+.
T Consensus 74 ~~~l~~~l~~~-~ii~d~~ 91 (279)
T PRK07417 74 SEQLIPALPPE-AIVTDVG 91 (279)
T ss_pred HHHHHHhCCCC-cEEEeCc
Confidence 78888888776 4444443
No 405
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=31.80 E-value=45 Score=32.91 Aligned_cols=87 Identities=13% Similarity=0.081 Sum_probs=52.3
Q ss_pred CCCeEEEECCC-cchhcc--CCCCCCeEE------EEeCCHHHHhhCCCCCcEEEecCCCCCCCCCCCCceeEEEeccch
Q 021661 148 PGVSILDLCSS-WVSHFP--PGYKQDRIV------GMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 218 (309)
Q Consensus 148 ~~~~ILDiGcG-~g~~~~--~~~~~~~v~------giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl 218 (309)
++.+|+=|||| .|..-. ..-.+.+|+ ++|.....-+.|++. -|...+. .+. -..-|+|++..-.
T Consensus 35 kgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~d-GF~v~~~---~Ea---~~~ADvVviLlPD 107 (487)
T PRK05225 35 KGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATEN-GFKVGTY---EEL---IPQADLVINLTPD 107 (487)
T ss_pred CCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhc-CCccCCH---HHH---HHhCCEEEEcCCh
Confidence 37899999999 443222 222344666 556656565555432 1222232 111 1346888876544
Q ss_pred hccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 219 DYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 219 ~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
. ....+.+++...||||..|.++
T Consensus 108 t---~q~~v~~~i~p~LK~Ga~L~fs 130 (487)
T PRK05225 108 K---QHSDVVRAVQPLMKQGAALGYS 130 (487)
T ss_pred H---HHHHHHHHHHhhCCCCCEEEec
Confidence 3 1445669999999999999887
No 406
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=31.29 E-value=48 Score=31.10 Aligned_cols=91 Identities=18% Similarity=0.365 Sum_probs=54.3
Q ss_pred CCCCeEEEECCC-cchhc---cCCCCCCeEEEEeCCHHHHhhCCCC--CcEEEe-cCCCCCCCC-------CCCCceeEE
Q 021661 147 TPGVSILDLCSS-WVSHF---PPGYKQDRIVGMGMNEEELKRNPVL--TEYVVQ-DLNLNPKLP-------FEDNSFDVI 212 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~~---~~~~~~~~v~giD~S~~~l~~a~~~--i~~~~~-D~~~~~~lp-------~~~~sfDlV 212 (309)
.++.++.=+|+| .|... ..+....+++|+|++++-.+.|++. .+++.. |. .. | ..++.+|.-
T Consensus 191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~---~~-~i~evi~EmTdgGvDys 266 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKDL---KK-PIQEVIIEMTDGGVDYS 266 (375)
T ss_pred CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhhc---cc-cHHHHHHHHhcCCceEE
Confidence 457777777877 44332 2334456999999999999999875 333321 22 22 2 234556654
Q ss_pred EeccchhccCCHHHHHHHHHhhcccC-cE-EEEEecC
Q 021661 213 TNVVSVDYLTKPIEVFKEMCQVLKPG-GL-AIVSFSN 247 (309)
Q Consensus 213 is~~vl~~l~d~~~~l~~i~rvLkpG-G~-lii~~~~ 247 (309)
+=. +- ..+.+++.....++| |. +++-+..
T Consensus 267 fEc--~G----~~~~m~~al~s~h~GwG~sv~iGv~~ 297 (375)
T KOG0022|consen 267 FEC--IG----NVSTMRAALESCHKGWGKSVVIGVAA 297 (375)
T ss_pred EEe--cC----CHHHHHHHHHHhhcCCCeEEEEEecC
Confidence 421 11 135677777778888 84 5665543
No 407
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=30.93 E-value=24 Score=32.16 Aligned_cols=90 Identities=11% Similarity=0.032 Sum_probs=50.8
Q ss_pred eEEEECCC-cchhc--cCCCCCCeEEEEeCCHHHHhhCCCCC-------------c----------E-EEecCCCCCCCC
Q 021661 151 SILDLCSS-WVSHF--PPGYKQDRIVGMGMNEEELKRNPVLT-------------E----------Y-VVQDLNLNPKLP 203 (309)
Q Consensus 151 ~ILDiGcG-~g~~~--~~~~~~~~v~giD~S~~~l~~a~~~i-------------~----------~-~~~D~~~~~~lp 203 (309)
+|.=||+| .|..+ ..+..+.+|+..|.+++.++.+.+.+ . . ...|+ ..
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~---~~-- 77 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDL---KA-- 77 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcH---HH--
Confidence 57778998 34322 22234678999999999887654310 0 0 11111 11
Q ss_pred CCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 204 FEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 204 ~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
.-..-|+|+.+-. +...-...++.++.+.++|+..+++..+.
T Consensus 78 -~~~~aD~Vi~avp-e~~~~k~~~~~~l~~~~~~~~il~~~tSt 119 (288)
T PRK09260 78 -AVADADLVIEAVP-EKLELKKAVFETADAHAPAECYIATNTST 119 (288)
T ss_pred -hhcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 1123588875532 21111346778888889887766555443
No 408
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=30.85 E-value=24 Score=28.32 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=16.2
Q ss_pred cccc-eecccccccccc---cccccccc
Q 021661 25 GYST-CLSCVSGVSKKS---DCRRFKAS 48 (309)
Q Consensus 25 ~~~~-~~~~~~~~~~~~---~~~~~~~~ 48 (309)
|+|. |++|++||-... -.||.|..
T Consensus 7 GtKr~Cp~cg~kFYDLnk~p~vcP~cg~ 34 (129)
T TIGR02300 7 GTKRICPNTGSKFYDLNRRPAVSPYTGE 34 (129)
T ss_pred CccccCCCcCccccccCCCCccCCCcCC
Confidence 4554 999999997544 44666643
No 409
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=30.59 E-value=56 Score=28.74 Aligned_cols=66 Identities=14% Similarity=0.100 Sum_probs=43.2
Q ss_pred CeEEEECCC-cchhccCC--CCCCeEEEEeCCHHHHhh-CC--CCCcEEEecCCCCCCCC-CCCCceeEEEec
Q 021661 150 VSILDLCSS-WVSHFPPG--YKQDRIVGMGMNEEELKR-NP--VLTEYVVQDLNLNPKLP-FEDNSFDVITNV 215 (309)
Q Consensus 150 ~~ILDiGcG-~g~~~~~~--~~~~~v~giD~S~~~l~~-a~--~~i~~~~~D~~~~~~lp-~~~~sfDlVis~ 215 (309)
++++=+||| .|..+... ..+..|+.+|.+++-++. +. ...+.+++|.....-|. ..-..+|++++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~ 73 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAA 73 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEe
Confidence 367788999 55544332 345699999999999887 33 34788899984321121 223458988865
No 410
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=30.58 E-value=24 Score=34.49 Aligned_cols=39 Identities=10% Similarity=-0.060 Sum_probs=28.6
Q ss_pred CCeEEEECCCcchhcc-CCC-CCCeEEEEeCCHHHHhhCCC
Q 021661 149 GVSILDLCSSWVSHFP-PGY-KQDRIVGMGMNEEELKRNPV 187 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~-~~~-~~~~v~giD~S~~~l~~a~~ 187 (309)
...+||||.|+|.... ... ....|++++.-.-|.+.|++
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~ark 107 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARK 107 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHH
Confidence 4589999999995432 222 24489999999999887764
No 411
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=30.49 E-value=20 Score=33.31 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHhhcccCcEE-EEEec
Q 021661 222 TKPIEVFKEMCQVLKPGGLA-IVSFS 246 (309)
Q Consensus 222 ~d~~~~l~~i~rvLkpGG~l-ii~~~ 246 (309)
...+.+|..+..+|+|||.+ +|++.
T Consensus 218 ~~L~~~L~~a~~~L~~gGrl~VISFH 243 (310)
T PF01795_consen 218 EELERGLEAAPDLLKPGGRLVVISFH 243 (310)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEESS
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 34678999999999999965 56654
No 412
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=30.08 E-value=18 Score=27.50 Aligned_cols=16 Identities=6% Similarity=0.040 Sum_probs=11.3
Q ss_pred eEEEECCCcchhccCC
Q 021661 151 SILDLCSSWVSHFPPG 166 (309)
Q Consensus 151 ~ILDiGcG~g~~~~~~ 166 (309)
-=+|||||.|......
T Consensus 5 gNIDIGcG~GNTmda~ 20 (124)
T PF07101_consen 5 GNIDIGCGAGNTMDAA 20 (124)
T ss_pred CccccccCCCcchhhh
Confidence 3479999988665443
No 413
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=29.47 E-value=80 Score=30.45 Aligned_cols=70 Identities=9% Similarity=-0.085 Sum_probs=44.8
Q ss_pred CCCCeEEEECCC-cchhccC--CCCCCeEEEEeCCHHHHhhCCC---CCcEEEecCCCCCCCC-CCCCceeEEEecc
Q 021661 147 TPGVSILDLCSS-WVSHFPP--GYKQDRIVGMGMNEEELKRNPV---LTEYVVQDLNLNPKLP-FEDNSFDVITNVV 216 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~~~~--~~~~~~v~giD~S~~~l~~a~~---~i~~~~~D~~~~~~lp-~~~~sfDlVis~~ 216 (309)
....+|+=+|+| .|..+.. ...+..|+.+|.+++.++..++ .+.++.+|+.....+. ..-+.+|.|++..
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~ 305 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALT 305 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECC
Confidence 346899999999 4433322 2246789999999998876543 3678899983221121 2234678887643
No 414
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=29.38 E-value=92 Score=28.40 Aligned_cols=89 Identities=12% Similarity=0.049 Sum_probs=51.6
Q ss_pred CeEEEECCC-cc--hhccCCCCCCeEEEEeCCHHHHhhCCCC-------------C---------cE--EEecCCCCCCC
Q 021661 150 VSILDLCSS-WV--SHFPPGYKQDRIVGMGMNEEELKRNPVL-------------T---------EY--VVQDLNLNPKL 202 (309)
Q Consensus 150 ~~ILDiGcG-~g--~~~~~~~~~~~v~giD~S~~~l~~a~~~-------------i---------~~--~~~D~~~~~~l 202 (309)
.+|-=||+| .| .....+..+.+|+..|.+++.++.+.++ . .. ...|+ +.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~---~~~ 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL---GDF 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH---HHh
Confidence 367778998 23 2333344578999999999998764332 0 00 11222 111
Q ss_pred CCCCCceeEEEeccchhccCCHHHHHHHHHhhc-ccCcEEEEEec
Q 021661 203 PFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVL-KPGGLAIVSFS 246 (309)
Q Consensus 203 p~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvL-kpGG~lii~~~ 246 (309)
..-|+|+-+ +.+.+.-...++.++.+++ +|+-.++-.++
T Consensus 83 ----~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il~snTS 122 (286)
T PRK07819 83 ----ADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVLASNTS 122 (286)
T ss_pred ----CCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 235777755 3343333457888888888 66655544333
No 415
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=29.21 E-value=98 Score=29.27 Aligned_cols=88 Identities=14% Similarity=0.024 Sum_probs=47.9
Q ss_pred CCCeEEEECCC-cchhc---cCCCCCCeEEEEeCCHHH-HhhCCCC-CcEEEecCCCCCCCCCCCCceeEEEeccchhcc
Q 021661 148 PGVSILDLCSS-WVSHF---PPGYKQDRIVGMGMNEEE-LKRNPVL-TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYL 221 (309)
Q Consensus 148 ~~~~ILDiGcG-~g~~~---~~~~~~~~v~giD~S~~~-l~~a~~~-i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l 221 (309)
++.+||=.|+| .|... .. ..+.+|+++|.+++. .+.+++. .+.+ .|......+.-..+.+|+|+-...
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak-~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~-i~~~~~~~v~~~~~~~D~vid~~G---- 251 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGK-AFGLRVTVISRSSEKEREAIDRLGADSF-LVTTDSQKMKEAVGTMDFIIDTVS---- 251 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHH-HcCCeEEEEeCChHHhHHHHHhCCCcEE-EcCcCHHHHHHhhCCCcEEEECCC----
Confidence 47889988997 33222 22 235689999987544 4444332 2221 121000011000124788876432
Q ss_pred CCHHHHHHHHHhhcccCcEEEE
Q 021661 222 TKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 222 ~d~~~~l~~i~rvLkpGG~lii 243 (309)
....+.++.+.|++||.++.
T Consensus 252 --~~~~~~~~~~~l~~~G~iv~ 271 (375)
T PLN02178 252 --AEHALLPLFSLLKVSGKLVA 271 (375)
T ss_pred --cHHHHHHHHHhhcCCCEEEE
Confidence 12467888899999997653
No 416
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=29.13 E-value=1.5e+02 Score=24.97 Aligned_cols=73 Identities=15% Similarity=0.142 Sum_probs=37.5
Q ss_pred CeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhh------CC----CCCcEEEecCCCC---CCC---CCCCCcee
Q 021661 150 VSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR------NP----VLTEYVVQDLNLN---PKL---PFEDNSFD 210 (309)
Q Consensus 150 ~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~------a~----~~i~~~~~D~~~~---~~l---p~~~~sfD 210 (309)
..|+.||||.-.. +....++.+++-+|+.+.+-.+ .. .+.+++..|+... +.| .+..+..-
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~pt 159 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDRPT 159 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTSEE
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCCCe
Confidence 4999999994422 2222236688888885432221 11 1256899998321 011 13344556
Q ss_pred EEEeccchhccC
Q 021661 211 VITNVVSVDYLT 222 (309)
Q Consensus 211 lVis~~vl~~l~ 222 (309)
++++-.++.+++
T Consensus 160 l~i~Egvl~Yl~ 171 (183)
T PF04072_consen 160 LFIAEGVLMYLS 171 (183)
T ss_dssp EEEEESSGGGS-
T ss_pred EEEEcchhhcCC
Confidence 777778888885
No 417
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=28.98 E-value=1.6e+02 Score=26.27 Aligned_cols=31 Identities=29% Similarity=0.546 Sum_probs=23.8
Q ss_pred ccccceeeeehhhHHHhhhhhhhcccCcchhhH
Q 021661 45 FKASRRLVVGLGAAFCSQFMTMAGTLGANSLIA 77 (309)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~r~~~~ 77 (309)
++.-|+++|.||++.|+.|+..-. .|+.+..
T Consensus 99 ~~g~RPLVlnFGS~TCPpF~~~l~--~f~~l~~ 129 (237)
T PF00837_consen 99 AKGNRPLVLNFGSCTCPPFMAKLD--AFKRLVE 129 (237)
T ss_pred ccCCCCeEEEcccccchHHHHHHH--HHHHHHH
Confidence 467899999999999999987554 3555544
No 418
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=28.86 E-value=41 Score=26.98 Aligned_cols=88 Identities=10% Similarity=0.096 Sum_probs=48.3
Q ss_pred EEEECCC-cchhccC--CCCCCeEEEEeCCHHHHhhCCC-CCcEEEec--------CCCCCCCCCCCCceeEEEeccchh
Q 021661 152 ILDLCSS-WVSHFPP--GYKQDRIVGMGMNEEELKRNPV-LTEYVVQD--------LNLNPKLPFEDNSFDVITNVVSVD 219 (309)
Q Consensus 152 ILDiGcG-~g~~~~~--~~~~~~v~giD~S~~~l~~a~~-~i~~~~~D--------~~~~~~lp~~~~sfDlVis~~vl~ 219 (309)
|+=+|+| .|..+.. ...+.+|+.++-++ -++.-++ .+.+...+ ... ...+...+.+|+|+.+.=-
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~viv~vKa- 77 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVI-SAPSADAGPYDLVIVAVKA- 77 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEE-SSHGHHHSTESEEEE-SSG-
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceeccccccc-CcchhccCCCcEEEEEecc-
Confidence 4557888 4433321 12577899999988 4433221 11111111 100 0111235679999976421
Q ss_pred ccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 220 YLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 220 ~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
.+.+.+++.+.+.+.|+..+++.
T Consensus 78 --~~~~~~l~~l~~~~~~~t~iv~~ 100 (151)
T PF02558_consen 78 --YQLEQALQSLKPYLDPNTTIVSL 100 (151)
T ss_dssp --GGHHHHHHHHCTGEETTEEEEEE
T ss_pred --cchHHHHHHHhhccCCCcEEEEE
Confidence 24578999999999999665543
No 419
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=28.80 E-value=68 Score=31.79 Aligned_cols=85 Identities=11% Similarity=0.031 Sum_probs=49.9
Q ss_pred CCCCeEEEECCC-cchhcc--CCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCCCCCceeEEEeccchhccCC
Q 021661 147 TPGVSILDLCSS-WVSHFP--PGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK 223 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~~~--~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d 223 (309)
..+.+|+=+|+| .|..+. ....+.+|+.+|.++.-...+... .+...++ +++ -...|+|+....-
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~-G~~~~~l---eel---l~~ADIVI~atGt----- 319 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAME-GYQVVTL---EDV---VETADIFVTATGN----- 319 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhc-CceeccH---HHH---HhcCCEEEECCCc-----
Confidence 458899999999 443322 123466899998886544332221 1222233 222 1347999876321
Q ss_pred HHHHH-HHHHhhcccCcEEEEE
Q 021661 224 PIEVF-KEMCQVLKPGGLAIVS 244 (309)
Q Consensus 224 ~~~~l-~~i~rvLkpGG~lii~ 244 (309)
..++ .+....||||+.++-.
T Consensus 320 -~~iI~~e~~~~MKpGAiLINv 340 (476)
T PTZ00075 320 -KDIITLEHMRRMKNNAIVGNI 340 (476)
T ss_pred -ccccCHHHHhccCCCcEEEEc
Confidence 2344 4788889999987654
No 420
>PF15629 Perm-CXXC: Permuted single zf-CXXC unit
Probab=28.68 E-value=22 Score=21.26 Aligned_cols=11 Identities=45% Similarity=0.830 Sum_probs=8.9
Q ss_pred ccccceecccc
Q 021661 24 SGYSTCLSCVS 34 (309)
Q Consensus 24 ~~~~~~~~~~~ 34 (309)
-.+++|.||++
T Consensus 14 C~~~tCfsCNs 24 (32)
T PF15629_consen 14 CDEETCFSCNS 24 (32)
T ss_pred cCCcccccccc
Confidence 35789999987
No 421
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=28.59 E-value=1.8e+02 Score=29.69 Aligned_cols=94 Identities=11% Similarity=0.014 Sum_probs=58.9
Q ss_pred CCeEEEECCC-cchhccC--CCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCCC-CCCCceeEEEeccchhccCC
Q 021661 149 GVSILDLCSS-WVSHFPP--GYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLP-FEDNSFDVITNVVSVDYLTK 223 (309)
Q Consensus 149 ~~~ILDiGcG-~g~~~~~--~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~lp-~~~~sfDlVis~~vl~~l~d 223 (309)
..+|+=+|+| .|..+.+ ...+.+++.+|.+++.++.+++. ...+.+|+...+-+. ..-+..|+|++.. +|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~-----~d 474 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITC-----NE 474 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEe-----CC
Confidence 3578889999 5544332 23466999999999999887654 778999994221111 1123567777643 23
Q ss_pred HHH--HHHHHHhhcccCcEEEEEecC
Q 021661 224 PIE--VFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 224 ~~~--~l~~i~rvLkpGG~lii~~~~ 247 (309)
.+. .+-...|.+.|...++....+
T Consensus 475 ~~~n~~i~~~~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 475 PEDTMKIVELCQQHFPHLHILARARG 500 (601)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 322 333455667788777766554
No 422
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=28.56 E-value=2.3e+02 Score=25.94 Aligned_cols=89 Identities=15% Similarity=0.205 Sum_probs=50.3
Q ss_pred CCCCeEEEECCC-cchh---ccCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCC----C-C-CCCCceeEEEec
Q 021661 147 TPGVSILDLCSS-WVSH---FPPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPK----L-P-FEDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~----l-p-~~~~sfDlVis~ 215 (309)
.++.+||=.|+| .|.. +.......+|+++|.++...+.+++. ++.+ .|... .+ + . .....+|+|+..
T Consensus 165 ~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~-v~~~~-~~~~~~i~~~~~~~~~d~vld~ 242 (345)
T cd08286 165 KPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHT-VNSAK-GDAIEQVLELTDGRGVDVVIEA 242 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCce-ecccc-ccHHHHHHHHhCCCCCCEEEEC
Confidence 446777778886 3322 22233226889999988776665432 1111 11100 01 0 0 123459998854
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
. .. ...+..+.+.|+++|.++.
T Consensus 243 ~-----g~-~~~~~~~~~~l~~~g~~v~ 264 (345)
T cd08286 243 V-----GI-PATFELCQELVAPGGHIAN 264 (345)
T ss_pred C-----CC-HHHHHHHHHhccCCcEEEE
Confidence 3 22 3467888899999997764
No 423
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=28.15 E-value=26 Score=22.54 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=12.1
Q ss_pred ceecccccccc----ccccccccccce
Q 021661 28 TCLSCVSGVSK----KSDCRRFKASRR 50 (309)
Q Consensus 28 ~~~~~~~~~~~----~~~~~~~~~~~~ 50 (309)
.|.+|++.+.. ..+.||.|..+-
T Consensus 5 ~C~~CG~~~~~~~~~~~~~Cp~CG~~~ 31 (46)
T PRK00398 5 KCARCGREVELDEYGTGVRCPYCGYRI 31 (46)
T ss_pred ECCCCCCEEEECCCCCceECCCCCCeE
Confidence 46666665521 135566665543
No 424
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=27.85 E-value=2.5e+02 Score=25.65 Aligned_cols=90 Identities=14% Similarity=0.150 Sum_probs=50.7
Q ss_pred CCCCeEEEECCCc-chhc---cCCCCCCe-EEEEeCCHHHHhhCCCC-C-cEEEecCCC----CCCC--CCCCCceeEEE
Q 021661 147 TPGVSILDLCSSW-VSHF---PPGYKQDR-IVGMGMNEEELKRNPVL-T-EYVVQDLNL----NPKL--PFEDNSFDVIT 213 (309)
Q Consensus 147 ~~~~~ILDiGcG~-g~~~---~~~~~~~~-v~giD~S~~~l~~a~~~-i-~~~~~D~~~----~~~l--p~~~~sfDlVi 213 (309)
.++.+||-.|+|. |..+ +.. .+.+ |++++-+++..+.+++. . .++..+-.. ...+ ......+|+|+
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~-~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d~vl 239 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKA-FGATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGPDVVI 239 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-cCCcEEEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCCCCCCEEE
Confidence 5578888888762 3222 222 3455 89998888776655432 1 111111100 0001 12234599998
Q ss_pred eccchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 214 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 214 s~~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
-+..- ...+.++.+.|+++|.++.
T Consensus 240 d~~g~------~~~~~~~~~~l~~~G~~v~ 263 (343)
T cd05285 240 ECTGA------ESCIQTAIYATRPGGTVVL 263 (343)
T ss_pred ECCCC------HHHHHHHHHHhhcCCEEEE
Confidence 65431 2367888999999997764
No 425
>PRK08265 short chain dehydrogenase; Provisional
Probab=27.84 E-value=84 Score=27.69 Aligned_cols=69 Identities=7% Similarity=0.088 Sum_probs=40.9
Q ss_pred CCeEEEECCC--cchhcc--CCCCCCeEEEEeCCHHHHhhC----CCCCcEEEecCCCCCCCC--C-----CCCceeEEE
Q 021661 149 GVSILDLCSS--WVSHFP--PGYKQDRIVGMGMNEEELKRN----PVLTEYVVQDLNLNPKLP--F-----EDNSFDVIT 213 (309)
Q Consensus 149 ~~~ILDiGcG--~g~~~~--~~~~~~~v~giD~S~~~l~~a----~~~i~~~~~D~~~~~~lp--~-----~~~sfDlVi 213 (309)
+.++|=.|++ .|..+. ....+.+|+.+|.+++-++.. ..++.++++|+...+.+. + ..+..|+++
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~lv 85 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVDILV 85 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence 5688888874 443332 223467999999987644322 234778899984321111 0 124579888
Q ss_pred eccc
Q 021661 214 NVVS 217 (309)
Q Consensus 214 s~~v 217 (309)
.+..
T Consensus 86 ~~ag 89 (261)
T PRK08265 86 NLAC 89 (261)
T ss_pred ECCC
Confidence 7654
No 426
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=27.83 E-value=99 Score=26.82 Aligned_cols=88 Identities=11% Similarity=0.052 Sum_probs=50.4
Q ss_pred eEEEECC-C-cchhcc--CCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCCCCCceeEEEeccchhccC---C
Q 021661 151 SILDLCS-S-WVSHFP--PGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT---K 223 (309)
Q Consensus 151 ~ILDiGc-G-~g~~~~--~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~---d 223 (309)
+|-=||. | .|..+. ....+.+||++=-++.-+..- +.+...+.|+.....+.-.-..||+||+.+....-. .
T Consensus 2 KIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~-~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~~~~~~~~ 80 (211)
T COG2910 2 KIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR-QGVTILQKDIFDLTSLASDLAGHDAVISAFGAGASDNDEL 80 (211)
T ss_pred eEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc-ccceeecccccChhhhHhhhcCCceEEEeccCCCCChhHH
Confidence 4445555 4 343332 234577999998888755433 457788889843222211224699999987554322 2
Q ss_pred HHHHHHHHHhhcccCc
Q 021661 224 PIEVFKEMCQVLKPGG 239 (309)
Q Consensus 224 ~~~~l~~i~rvLkpGG 239 (309)
..+..+.+...||--|
T Consensus 81 ~~k~~~~li~~l~~ag 96 (211)
T COG2910 81 HSKSIEALIEALKGAG 96 (211)
T ss_pred HHHHHHHHHHHHhhcC
Confidence 2344555666666533
No 427
>PRK10458 DNA cytosine methylase; Provisional
Probab=27.62 E-value=1.1e+02 Score=30.24 Aligned_cols=47 Identities=13% Similarity=0.126 Sum_probs=29.4
Q ss_pred CCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCCC------CcEEEecC
Q 021661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVL------TEYVVQDL 196 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~------i~~~~~D~ 196 (309)
..+++|+-||.|.. +..+ ...-|.++|+++.+.+.-+.| ...+..|+
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI 143 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-GGQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDI 143 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-CCEEEEEEechHHHHHHHHHHcCCCCccceeccCh
Confidence 57999997775522 2222 234678999999887754333 24455666
No 428
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=27.62 E-value=1.1e+02 Score=23.20 Aligned_cols=76 Identities=12% Similarity=0.036 Sum_probs=47.3
Q ss_pred CCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCCC-CCCCceeEEEeccchhccCCHH--HHHHHHHhhcccCcEEEEE
Q 021661 169 QDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLP-FEDNSFDVITNVVSVDYLTKPI--EVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 169 ~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~lp-~~~~sfDlVis~~vl~~l~d~~--~~l~~i~rvLkpGG~lii~ 244 (309)
+.+|+.+|.+++..+.+++. ..++.+|......+. ..-++.|.|++..- +.. ..+....+-+.|...++..
T Consensus 21 ~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~-----~d~~n~~~~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 21 GIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTD-----DDEENLLIALLARELNPDIRIIAR 95 (116)
T ss_dssp TSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESS-----SHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred CCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccC-----CHHHHHHHHHHHHHHCCCCeEEEE
Confidence 35899999999988876643 789999983211111 12245787777542 222 3444556667788888877
Q ss_pred ecCcc
Q 021661 245 FSNRC 249 (309)
Q Consensus 245 ~~~~~ 249 (309)
..++.
T Consensus 96 ~~~~~ 100 (116)
T PF02254_consen 96 VNDPE 100 (116)
T ss_dssp ESSHH
T ss_pred ECCHH
Confidence 66543
No 429
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=27.58 E-value=2.3e+02 Score=25.84 Aligned_cols=89 Identities=13% Similarity=0.123 Sum_probs=52.2
Q ss_pred CCCCeEEEECC-C-cchhcc--CCCCCCeEEEEeCCHHHHhhCCC-C-CcEEEecCCCCCCC-----CCCCCceeEEEec
Q 021661 147 TPGVSILDLCS-S-WVSHFP--PGYKQDRIVGMGMNEEELKRNPV-L-TEYVVQDLNLNPKL-----PFEDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGc-G-~g~~~~--~~~~~~~v~giD~S~~~l~~a~~-~-i~~~~~D~~~~~~l-----p~~~~sfDlVis~ 215 (309)
.++.+||=.|+ | .|.... ....+.+|++++.+++-.+.+++ . .+.+ .|.....+. ....+.+|+|+-.
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~v-i~~~~~~~~~~~i~~~~~~gvd~v~d~ 228 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDA-FNYKEEPDLDAALKRYFPNGIDIYFDN 228 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCcee-EEcCCcccHHHHHHHhCCCCcEEEEEC
Confidence 55889998887 4 443321 12246789999998887776654 2 2211 111000011 1112468988864
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
.. ...+.+..+.|+++|.++.
T Consensus 229 ~g-------~~~~~~~~~~l~~~G~iv~ 249 (338)
T cd08295 229 VG-------GKMLDAVLLNMNLHGRIAA 249 (338)
T ss_pred CC-------HHHHHHHHHHhccCcEEEE
Confidence 32 2567888999999997764
No 430
>PRK07806 short chain dehydrogenase; Provisional
Probab=27.19 E-value=3e+02 Score=23.58 Aligned_cols=96 Identities=13% Similarity=0.015 Sum_probs=51.2
Q ss_pred CCeEEEECCC--cchhccC--CCCCCeEEEEeCCHH-HHh-------hCCCCCcEEEecCCCCCCCC--C-----CCCce
Q 021661 149 GVSILDLCSS--WVSHFPP--GYKQDRIVGMGMNEE-ELK-------RNPVLTEYVVQDLNLNPKLP--F-----EDNSF 209 (309)
Q Consensus 149 ~~~ILDiGcG--~g~~~~~--~~~~~~v~giD~S~~-~l~-------~a~~~i~~~~~D~~~~~~lp--~-----~~~sf 209 (309)
+.++|-.|++ .|..+.. ...+.+|++++.+.. .++ ....++.++++|+...+.+. + ..+..
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 85 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFGGL 85 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 5689989874 4443322 234678888876532 221 11223677888983221111 0 11357
Q ss_pred eEEEeccchhcc-------------CCHHHHHHHHHhhcccCcEEEEE
Q 021661 210 DVITNVVSVDYL-------------TKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 210 DlVis~~vl~~l-------------~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
|+|+.+...... .-+..+++.+.+.++.+|.+++.
T Consensus 86 d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 86 DALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred cEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 888765432211 01345677777777767765543
No 431
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=26.79 E-value=2.8e+02 Score=26.79 Aligned_cols=96 Identities=20% Similarity=0.148 Sum_probs=50.8
Q ss_pred CeEEEECCC-cchhc--cCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCC-------CCCC--CCCCceeEEEecc
Q 021661 150 VSILDLCSS-WVSHF--PPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLN-------PKLP--FEDNSFDVITNVV 216 (309)
Q Consensus 150 ~~ILDiGcG-~g~~~--~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~-------~~lp--~~~~sfDlVis~~ 216 (309)
++|-=||.| .|..+ ..+..+.+|+++|.+++-++..+.. +.+...++... -.+. .....-|+|+.+-
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v 83 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV 83 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence 467778998 34322 2233467999999999987753321 11111111000 0000 0012357777553
Q ss_pred chh-------ccCCHHHHHHHHHhhcccCcEEEEEe
Q 021661 217 SVD-------YLTKPIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 217 vl~-------~l~d~~~~l~~i~rvLkpGG~lii~~ 245 (309)
--. .+.....+++.+.+.|++|-++++..
T Consensus 84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~S 119 (415)
T PRK11064 84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILES 119 (415)
T ss_pred CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 221 12234567788999999877766653
No 432
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=26.78 E-value=71 Score=29.25 Aligned_cols=90 Identities=14% Similarity=0.083 Sum_probs=49.0
Q ss_pred eEEEECCC-cchhc--cCCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCCCCCceeEEEeccchhccCCHHHH
Q 021661 151 SILDLCSS-WVSHF--PPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEV 227 (309)
Q Consensus 151 ~ILDiGcG-~g~~~--~~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~~~~ 227 (309)
+|-=||+| .|..+ .....+.+|++.|.+++.++...+.......+. .++...-..-|+|+..---. ..+.+
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~---~~~~~~~~~~dvIi~~vp~~---~~~~v 75 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANL---RELSQRLSAPRVVWVMVPHG---IVDAV 75 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCH---HHHHhhcCCCCEEEEEcCch---HHHHH
Confidence 45667998 44322 222346789999999987765543211111121 11110112358887753211 34567
Q ss_pred HHHHHhhcccCcEEEEEecC
Q 021661 228 FKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 228 l~~i~rvLkpGG~lii~~~~ 247 (309)
++++...|++| .++++..+
T Consensus 76 ~~~l~~~l~~g-~ivid~st 94 (298)
T TIGR00872 76 LEELAPTLEKG-DIVIDGGN 94 (298)
T ss_pred HHHHHhhCCCC-CEEEECCC
Confidence 78888888876 55666554
No 433
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=26.73 E-value=76 Score=29.51 Aligned_cols=40 Identities=18% Similarity=0.144 Sum_probs=29.6
Q ss_pred CCCCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhhCC
Q 021661 147 TPGVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKRNP 186 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~a~ 186 (309)
..+.+|.-+|+|.-..+. ......+|.++|+++..|...+
T Consensus 62 g~ghrivtigSGGcn~L~ylsr~Pa~id~VDlN~ahiAln~ 102 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYLSRAPARIDVVDLNPAHIALNR 102 (414)
T ss_pred CCCcEEEEecCCcchHHHHhhcCCceeEEEeCCHHHHHHHH
Confidence 447899999998664433 3344679999999999877543
No 434
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=26.32 E-value=33 Score=19.25 Aligned_cols=20 Identities=10% Similarity=0.174 Sum_probs=11.1
Q ss_pred cceecccccccccccccccc
Q 021661 27 STCLSCVSGVSKKSDCRRFK 46 (309)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~ 46 (309)
..|++|++.+...+=-|+.|
T Consensus 3 ~~Cp~Cg~~~~~~~~fC~~C 22 (26)
T PF13248_consen 3 MFCPNCGAEIDPDAKFCPNC 22 (26)
T ss_pred CCCcccCCcCCcccccChhh
Confidence 46777877555333334444
No 435
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=26.29 E-value=2.1e+02 Score=26.16 Aligned_cols=85 Identities=13% Similarity=0.072 Sum_probs=48.7
Q ss_pred CCeEEEECC-C-cchhc---cCCCCCC-eEEEEeCCHHHHhhCCC-C-CcEEEecCCCCCCC-----CCCCCceeEEEec
Q 021661 149 GVSILDLCS-S-WVSHF---PPGYKQD-RIVGMGMNEEELKRNPV-L-TEYVVQDLNLNPKL-----PFEDNSFDVITNV 215 (309)
Q Consensus 149 ~~~ILDiGc-G-~g~~~---~~~~~~~-~v~giD~S~~~l~~a~~-~-i~~~~~D~~~~~~l-----p~~~~sfDlVis~ 215 (309)
+.+||=.|+ | .|... ... .+. +|++++.+++..+.+++ . .+.+ .|... .++ ...++.+|+|+..
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~-~G~~~Vi~~~~s~~~~~~~~~~lGa~~v-i~~~~-~~~~~~i~~~~~~gvd~vid~ 231 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRL-LGCSRVVGICGSDEKCQLLKSELGFDAA-INYKT-DNVAERLRELCPEGVDVYFDN 231 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHH-cCCCEEEEEcCCHHHHHHHHHhcCCcEE-EECCC-CCHHHHHHHHCCCCceEEEEC
Confidence 378998887 4 44332 222 355 79999999877665543 1 2221 12100 111 0122469999864
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
.. . ..+.++.+.|+++|.++.
T Consensus 232 ~g-----~--~~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 232 VG-----G--EISDTVISQMNENSHIIL 252 (345)
T ss_pred CC-----c--HHHHHHHHHhccCCEEEE
Confidence 32 2 235788899999997764
No 436
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=26.13 E-value=2.2e+02 Score=29.17 Aligned_cols=91 Identities=9% Similarity=-0.016 Sum_probs=54.2
Q ss_pred CCeEEEECCC-cchhccC--CCCCCeEEEEeCCHHHHhhCCC-CCcEEEecCCCCCCCC-CCCCceeEEEeccchhccCC
Q 021661 149 GVSILDLCSS-WVSHFPP--GYKQDRIVGMGMNEEELKRNPV-LTEYVVQDLNLNPKLP-FEDNSFDVITNVVSVDYLTK 223 (309)
Q Consensus 149 ~~~ILDiGcG-~g~~~~~--~~~~~~v~giD~S~~~l~~a~~-~i~~~~~D~~~~~~lp-~~~~sfDlVis~~vl~~l~d 223 (309)
..+|+=+||| .|..+.+ ...+.+++.+|.+++.++.+++ ....+.+|+...+-+. ..-+..|+|++.. +|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~-----~d 474 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAI-----DD 474 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEe-----CC
Confidence 4689999999 5544432 2235689999999999987765 3778999994221111 1223577777653 23
Q ss_pred HH--HHHHHHHhhcccCcEEEEE
Q 021661 224 PI--EVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 224 ~~--~~l~~i~rvLkpGG~lii~ 244 (309)
.+ ..+-...|.+.|+-.++.-
T Consensus 475 ~~~n~~i~~~ar~~~p~~~iiaR 497 (621)
T PRK03562 475 PQTSLQLVELVKEHFPHLQIIAR 497 (621)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEE
Confidence 22 2233344445565554443
No 437
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=25.93 E-value=2.7e+02 Score=25.38 Aligned_cols=90 Identities=12% Similarity=0.172 Sum_probs=50.4
Q ss_pred CCCCeEEEECCCc-chhcc--CCCCCCe-EEEEeCCHHHHhhCCCC-CcEEEecCCC--CCCC-C-CCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSSW-VSHFP--PGYKQDR-IVGMGMNEEELKRNPVL-TEYVVQDLNL--NPKL-P-FEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG~-g~~~~--~~~~~~~-v~giD~S~~~l~~a~~~-i~~~~~D~~~--~~~l-p-~~~~sfDlVis~~v 217 (309)
.++.+||-.|+|. |..+. ....+.+ |++++-+++..+..++. ... ..+... ...+ . .....+|+|+.+.
T Consensus 158 ~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~-~~~~~~~~~~~~~~~~~~~~~d~vld~~- 235 (343)
T cd08236 158 TLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADD-TINPKEEDVEKVRELTEGRGADLVIEAA- 235 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCE-EecCccccHHHHHHHhCCCCCCEEEECC-
Confidence 4578899998763 32221 1123555 99999888777665432 111 111100 0011 1 1223489998652
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
.....+..+.+.|+++|.++.
T Consensus 236 -----g~~~~~~~~~~~l~~~G~~v~ 256 (343)
T cd08236 236 -----GSPATIEQALALARPGGKVVL 256 (343)
T ss_pred -----CCHHHHHHHHHHhhcCCEEEE
Confidence 124567888999999997653
No 438
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=25.93 E-value=3e+02 Score=25.15 Aligned_cols=88 Identities=16% Similarity=0.175 Sum_probs=49.8
Q ss_pred CCCCeEEEECCC-cchh---ccCCCCCCe-EEEEeCCHHHHhhCCCC-CcEEEecCCCCCC----C-C-CCCCceeEEEe
Q 021661 147 TPGVSILDLCSS-WVSH---FPPGYKQDR-IVGMGMNEEELKRNPVL-TEYVVQDLNLNPK----L-P-FEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~---~~~~~~~~~-v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~----l-p-~~~~sfDlVis 214 (309)
.++.+||-.|+| .|.. +... .+.+ |++++-++.-.+.+++. ++. ..|... .. + . .....+|+|+.
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~-~G~~~v~~~~~~~~~~~~~~~~g~~~-~v~~~~-~~~~~~l~~~~~~~~~d~vld 236 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKA-SGAYPVIVSDPNEYRLELAKKMGATY-VVNPFK-EDVVKEVADLTDGEGVDVFLE 236 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-cCCcEEEEECCCHHHHHHHHHhCCcE-EEcccc-cCHHHHHHHhcCCCCCCEEEE
Confidence 347788778876 3322 2222 3555 88888888766655443 211 112200 11 1 0 12346899987
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
+.. -...+.++.+.|+++|.++.
T Consensus 237 ~~g------~~~~~~~~~~~l~~~g~~v~ 259 (340)
T TIGR00692 237 MSG------APKALEQGLQAVTPGGRVSL 259 (340)
T ss_pred CCC------CHHHHHHHHHhhcCCCEEEE
Confidence 522 13567889999999997654
No 439
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=25.54 E-value=2.7e+02 Score=26.67 Aligned_cols=36 Identities=6% Similarity=-0.116 Sum_probs=23.6
Q ss_pred eEEEECCC-cch--hccCCCCCCeEEEEeCCHHHHhhCCC
Q 021661 151 SILDLCSS-WVS--HFPPGYKQDRIVGMGMNEEELKRNPV 187 (309)
Q Consensus 151 ~ILDiGcG-~g~--~~~~~~~~~~v~giD~S~~~l~~a~~ 187 (309)
+|-=||.| .|. ....+. +.+|+++|++++-++..++
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLND 40 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHc
Confidence 45556888 332 222222 5789999999998886554
No 440
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=25.43 E-value=2.9e+02 Score=25.36 Aligned_cols=88 Identities=18% Similarity=0.145 Sum_probs=51.0
Q ss_pred CCCCeEEEECCC-cchhc---cCCCCCC-eEEEEeCCHHHHhhCCCC-CcEEEecCCCCCC----C-C-CCCCceeEEEe
Q 021661 147 TPGVSILDLCSS-WVSHF---PPGYKQD-RIVGMGMNEEELKRNPVL-TEYVVQDLNLNPK----L-P-FEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~~---~~~~~~~-~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~----l-p-~~~~sfDlVis 214 (309)
.++.+||=.|+| .|... ... .+. +|++++.+++..+.+++. .+.+ .|... .+ + . ...+.+|+|+-
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a~~-~G~~~v~~~~~~~~~~~~~~~~ga~~~-i~~~~-~~~~~~l~~~~~~~~~d~vid 247 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILALKA-AGASKIIVSEPSEARRELAEELGATIV-LDPTE-VDVVAEVRKLTGGGGVDVSFD 247 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-cCCCEEEEECCCHHHHHHHHHhCCCEE-ECCCc-cCHHHHHHHHhCCCCCCEEEE
Confidence 457788888876 33222 222 355 899999998877766442 2211 12200 01 1 0 12234899986
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
+..- ...+.++.+.|+++|.++.
T Consensus 248 ~~g~------~~~~~~~~~~l~~~G~~v~ 270 (351)
T cd08233 248 CAGV------QATLDTAIDALRPRGTAVN 270 (351)
T ss_pred CCCC------HHHHHHHHHhccCCCEEEE
Confidence 5321 2467888999999997643
No 441
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=25.24 E-value=3.1e+02 Score=24.98 Aligned_cols=86 Identities=17% Similarity=0.259 Sum_probs=48.2
Q ss_pred CCCCeEEEECC-C-cchhc--cCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCC---CC-CCCCceeEEEeccc
Q 021661 147 TPGVSILDLCS-S-WVSHF--PPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPK---LP-FEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGc-G-~g~~~--~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~---lp-~~~~sfDlVis~~v 217 (309)
.++.+||=.|+ | .|..+ .....+.++++++-+. ..+.+++. ++.+ .+... .. .. .....+|+|+....
T Consensus 176 ~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~~g~~~~-~~~~~-~~~~~~~~~~~~~~d~vi~~~g 252 (350)
T cd08274 176 GAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRALGADTV-ILRDA-PLLADAKALGGEPVDVVADVVG 252 (350)
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHhcCCeEE-EeCCC-ccHHHHHhhCCCCCcEEEecCC
Confidence 45789999987 4 33222 1123467788888654 55554432 2222 11100 00 11 12346999986533
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEE
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAI 242 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~li 242 (309)
...+.++.+.|+++|.++
T Consensus 253 -------~~~~~~~~~~l~~~G~~v 270 (350)
T cd08274 253 -------GPLFPDLLRLLRPGGRYV 270 (350)
T ss_pred -------HHHHHHHHHHhccCCEEE
Confidence 135778899999999765
No 442
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=25.22 E-value=1.7e+02 Score=28.10 Aligned_cols=94 Identities=15% Similarity=0.096 Sum_probs=54.9
Q ss_pred CeEEEECCC-cchhccC--CCCCCeEEEEeCCHHHHhhCCC--CCcEEEecCCCCCCCC-CCCCceeEEEeccchhccCC
Q 021661 150 VSILDLCSS-WVSHFPP--GYKQDRIVGMGMNEEELKRNPV--LTEYVVQDLNLNPKLP-FEDNSFDVITNVVSVDYLTK 223 (309)
Q Consensus 150 ~~ILDiGcG-~g~~~~~--~~~~~~v~giD~S~~~l~~a~~--~i~~~~~D~~~~~~lp-~~~~sfDlVis~~vl~~l~d 223 (309)
++|+=+|+| .|..+.. ...+..|+.+|.+++.++..++ .++++.+|......+. ..-+.+|.|++...=. +
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~---~ 77 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSD---E 77 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCCh---H
Confidence 367888998 4543322 2246789999999998887654 3778889883211111 1134588887754211 2
Q ss_pred HHHHHHHHHhhcccCcEEEEEec
Q 021661 224 PIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 224 ~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
....+..+.+.+.|.-.++....
T Consensus 78 ~n~~~~~~~r~~~~~~~ii~~~~ 100 (453)
T PRK09496 78 TNMVACQIAKSLFGAPTTIARVR 100 (453)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEC
Confidence 23344455566655555555443
No 443
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=25.08 E-value=1.1e+02 Score=25.38 Aligned_cols=108 Identities=13% Similarity=0.103 Sum_probs=49.7
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhh-CCCCCcEEEecCCCCCCCCC---C
Q 021661 133 ALTKYYSEVFPPSNTPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQDLNLNPKLPF---E 205 (309)
Q Consensus 133 ~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~-a~~~i~~~~~D~~~~~~lp~---~ 205 (309)
...++....... ...-|||+|=|.|.++ ....|+.+|+.+|-.-..--- ....-+++++|+. +.+|. .
T Consensus 16 ~~L~~a~~~v~~---~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~--~tl~~~~~~ 90 (160)
T PF12692_consen 16 DCLNWAAAQVAG---LPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDIR--ETLPALARF 90 (160)
T ss_dssp HHHHHHHHHTTT-----S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-HH--HHHHHHHHH
T ss_pred HHHHHHHHHhcC---CCCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccHH--HHhHHHHhc
Confidence 334555555542 2579999999999654 556788999999975332111 1122568888883 23332 1
Q ss_pred CCceeEEEeccchhccCCHH----HHHHHHHhhcccCcEEEEEe
Q 021661 206 DNSFDVITNVVSVDYLTKPI----EVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 206 ~~sfDlVis~~vl~~l~d~~----~~l~~i~rvLkpGG~lii~~ 245 (309)
..+.-++.+-...++-..-. ..-.-|..+|.|||+++-..
T Consensus 91 g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~ 134 (160)
T PF12692_consen 91 GAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQ 134 (160)
T ss_dssp -S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred CCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCC
Confidence 22333444333333221111 22234668999999887543
No 444
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=25.02 E-value=2.7e+02 Score=26.14 Aligned_cols=89 Identities=11% Similarity=0.181 Sum_probs=51.8
Q ss_pred CCCCeEEEECCC-cchh---ccCCCCCC-eEEEEeCCHHHHhhCCCC-CcEEEecCCCC---------CCCCCCCCceeE
Q 021661 147 TPGVSILDLCSS-WVSH---FPPGYKQD-RIVGMGMNEEELKRNPVL-TEYVVQDLNLN---------PKLPFEDNSFDV 211 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~---~~~~~~~~-~v~giD~S~~~l~~a~~~-i~~~~~D~~~~---------~~lp~~~~sfDl 211 (309)
.++.+||=.|+| .|.. +... .+. +|++++.+++-.+.+++. ++.+ .+.... ..+ .....+|+
T Consensus 202 ~~g~~VlV~g~g~vG~~ai~lA~~-~G~~~vi~~~~~~~~~~~~~~~g~~~~-v~~~~~~~~~~~~~v~~~-~~g~gvDv 278 (384)
T cd08265 202 RPGAYVVVYGAGPIGLAAIALAKA-AGASKVIAFEISEERRNLAKEMGADYV-FNPTKMRDCLSGEKVMEV-TKGWGADI 278 (384)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCHHHHHHHHHcCCCEE-EcccccccccHHHHHHHh-cCCCCCCE
Confidence 457788888887 3322 2233 345 799999988766655443 2221 111000 011 12345898
Q ss_pred EEeccchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 212 ITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 212 Vis~~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
|+.... +....+.++.+.|+++|.++.
T Consensus 279 vld~~g-----~~~~~~~~~~~~l~~~G~~v~ 305 (384)
T cd08265 279 QVEAAG-----APPATIPQMEKSIAINGKIVY 305 (384)
T ss_pred EEECCC-----CcHHHHHHHHHHHHcCCEEEE
Confidence 886422 335678888999999997764
No 445
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=24.48 E-value=54 Score=29.79 Aligned_cols=93 Identities=12% Similarity=0.145 Sum_probs=48.4
Q ss_pred CeEEEECCC-cchh--ccCCCCCCeEEEEeCCHHHHhhCCCCC-----------cEEEec--------CCCCCCCCCCCC
Q 021661 150 VSILDLCSS-WVSH--FPPGYKQDRIVGMGMNEEELKRNPVLT-----------EYVVQD--------LNLNPKLPFEDN 207 (309)
Q Consensus 150 ~~ILDiGcG-~g~~--~~~~~~~~~v~giD~S~~~l~~a~~~i-----------~~~~~D--------~~~~~~lp~~~~ 207 (309)
.+|.=||+| .|.. ...+..+.+|+.+|.+++.++.+++.+ .....+ +....++.-.-.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 367778998 3432 222334679999999998877654321 110000 000011110012
Q ss_pred ceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 208 SFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 208 sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
.-|+|+.+-. +.+.-...+++++...++++-.++.
T Consensus 84 ~aDlVieavp-e~~~~k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 84 DADLVIEAVP-EDPEIKGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred CCCEEEEecc-CCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 3577776532 2222245778888888877665433
No 446
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=24.09 E-value=1.4e+02 Score=24.63 Aligned_cols=33 Identities=30% Similarity=0.527 Sum_probs=25.9
Q ss_pred CceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 207 NSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 207 ~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+.+|++++.. + ..+.....-|||||.+++....
T Consensus 56 ~~~Dilv~l~-------~-~~~~~~~~~l~~~g~vi~ns~~ 88 (173)
T PF01558_consen 56 GEADILVALD-------P-EALERHLKGLKPGGVVIINSSL 88 (173)
T ss_dssp SSESEEEESS-------H-HHHHHCGTTCETTEEEEEETTT
T ss_pred CCCCEEEEcC-------H-HHHHHHhcCcCcCeEEEEECCC
Confidence 7899999963 3 4455778889999999998653
No 447
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.82 E-value=45 Score=30.97 Aligned_cols=61 Identities=11% Similarity=0.062 Sum_probs=35.6
Q ss_pred EEEECCCcchh-ccCCCCCC-eEEEEeCCHHHHhhCCCCC--cEEEecCCCCCCCCC-CCCceeEEEec
Q 021661 152 ILDLCSSWVSH-FPPGYKQD-RIVGMGMNEEELKRNPVLT--EYVVQDLNLNPKLPF-EDNSFDVITNV 215 (309)
Q Consensus 152 ILDiGcG~g~~-~~~~~~~~-~v~giD~S~~~l~~a~~~i--~~~~~D~~~~~~lp~-~~~sfDlVis~ 215 (309)
|+|+-||.|.. +.....+. -+.++|+++...+.-+.+. ..+.+|+ .++.. .-..+|+++..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~~~~~~Di---~~~~~~~~~~~dvl~gg 66 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGNKVPFGDI---TKISPSDIPDFDILLGG 66 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCCCCCccCh---hhhhhhhCCCcCEEEec
Confidence 58996664422 11111234 4668999999888655542 4566787 44431 11248999854
No 448
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=23.54 E-value=3.2e+02 Score=24.02 Aligned_cols=88 Identities=25% Similarity=0.303 Sum_probs=49.4
Q ss_pred CCCCeEEEECC-C-cchhc--cCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCCC------CCCCceeEEEec
Q 021661 147 TPGVSILDLCS-S-WVSHF--PPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLP------FEDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGc-G-~g~~~--~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~lp------~~~~sfDlVis~ 215 (309)
.++.+||-.|| | .|... .....+.+|++++.++...+.+++. +.... +... .+.. .....+|+++.+
T Consensus 138 ~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~-~~~~-~~~~~~i~~~~~~~~~d~v~~~ 215 (323)
T cd08241 138 QPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARALGADHVI-DYRD-PDLRERVKALTGGRGVDVVYDP 215 (323)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHHcCCceee-ecCC-ccHHHHHHHHcCCCCcEEEEEC
Confidence 45789999998 3 34322 1223466899999988777665432 11111 1100 0110 123458988865
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
..- ..+..+.+.++++|.++.
T Consensus 216 ~g~-------~~~~~~~~~~~~~g~~v~ 236 (323)
T cd08241 216 VGG-------DVFEASLRSLAWGGRLLV 236 (323)
T ss_pred ccH-------HHHHHHHHhhccCCEEEE
Confidence 321 345667888999997653
No 449
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=23.53 E-value=2.4e+02 Score=26.27 Aligned_cols=87 Identities=18% Similarity=0.275 Sum_probs=50.0
Q ss_pred CCCCeEEEECCC-cchh---ccCCCCCC-eEEEEeCCHHHHhhCCCC-C-cEEEecCCCCC--C----C-CCCCCceeEE
Q 021661 147 TPGVSILDLCSS-WVSH---FPPGYKQD-RIVGMGMNEEELKRNPVL-T-EYVVQDLNLNP--K----L-PFEDNSFDVI 212 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~---~~~~~~~~-~v~giD~S~~~l~~a~~~-i-~~~~~D~~~~~--~----l-p~~~~sfDlV 212 (309)
.++.+||=.|+| .|.. +.... +. .|++++.+++-.+.+++. + +++ +... . . + ....+.+|+|
T Consensus 182 ~~g~~vlI~g~g~vG~~a~~~a~~~-G~~~v~~~~~~~~~~~~~~~~g~~~~v--~~~~-~~~~~~~~l~~~~~~~~d~v 257 (365)
T cd05279 182 TPGSTCAVFGLGGVGLSVIMGCKAA-GASRIIAVDINKDKFEKAKQLGATECI--NPRD-QDKPIVEVLTEMTDGGVDYA 257 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHhCCCeec--cccc-ccchHHHHHHHHhCCCCcEE
Confidence 457788888887 3322 22333 44 588999888877765432 1 111 1100 1 0 0 0112458988
Q ss_pred EeccchhccCCHHHHHHHHHhhcc-cCcEEEE
Q 021661 213 TNVVSVDYLTKPIEVFKEMCQVLK-PGGLAIV 243 (309)
Q Consensus 213 is~~vl~~l~d~~~~l~~i~rvLk-pGG~lii 243 (309)
+.... . ...+....+.|+ ++|.++.
T Consensus 258 id~~g-----~-~~~~~~~~~~l~~~~G~~v~ 283 (365)
T cd05279 258 FEVIG-----S-ADTLKQALDATRLGGGTSVV 283 (365)
T ss_pred EECCC-----C-HHHHHHHHHHhccCCCEEEE
Confidence 86432 1 356778899999 9997764
No 450
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=23.39 E-value=2.4e+02 Score=26.27 Aligned_cols=32 Identities=6% Similarity=-0.013 Sum_probs=19.5
Q ss_pred CCeEEEECC-C-cchhccC---CC------CCCeEEEEeCCHH
Q 021661 149 GVSILDLCS-S-WVSHFPP---GY------KQDRIVGMGMNEE 180 (309)
Q Consensus 149 ~~~ILDiGc-G-~g~~~~~---~~------~~~~v~giD~S~~ 180 (309)
+.+|+=+|+ | .|..+.. .. ...++..+|+++.
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~ 44 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPA 44 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCc
Confidence 457888998 7 4433211 11 2248999999654
No 451
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=23.37 E-value=1.1e+02 Score=31.97 Aligned_cols=91 Identities=14% Similarity=0.111 Sum_probs=56.1
Q ss_pred CeEEEECCCc-c--hhccCCCCCCeEEEEeCCHHHHhhCCCCC----------------------cEEEecCCCCCCCCC
Q 021661 150 VSILDLCSSW-V--SHFPPGYKQDRIVGMGMNEEELKRNPVLT----------------------EYVVQDLNLNPKLPF 204 (309)
Q Consensus 150 ~~ILDiGcG~-g--~~~~~~~~~~~v~giD~S~~~l~~a~~~i----------------------~~~~~D~~~~~~lp~ 204 (309)
.+|-=||+|+ | .....+..+..|+..|.+++.++.+.+++ ..+.... ++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~----~~~- 388 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTL----SYA- 388 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeC----CHH-
Confidence 4677789982 2 33334455889999999999987654320 1111111 111
Q ss_pred CCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 205 EDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 205 ~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
.-..-|+|+=. +.+.+.-..++++++.++++|+..|.-.++
T Consensus 389 ~~~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~ilasnTS 429 (714)
T TIGR02437 389 GFDNVDIVVEA-VVENPKVKAAVLAEVEQHVREDAILASNTS 429 (714)
T ss_pred HhcCCCEEEEc-CcccHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 01236777654 455555567899999999999977655443
No 452
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=23.05 E-value=95 Score=28.21 Aligned_cols=86 Identities=13% Similarity=0.118 Sum_probs=47.6
Q ss_pred CeEEEECCC-cchhc--cCCCCCCeEEEEeCCHHHHhhCCCCC----------------------cEE--EecCCCCCCC
Q 021661 150 VSILDLCSS-WVSHF--PPGYKQDRIVGMGMNEEELKRNPVLT----------------------EYV--VQDLNLNPKL 202 (309)
Q Consensus 150 ~~ILDiGcG-~g~~~--~~~~~~~~v~giD~S~~~l~~a~~~i----------------------~~~--~~D~~~~~~l 202 (309)
.+|-=||+| .|..+ ..+..+.+|++.|.+++.++.+++.+ ... ..|. +.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~- 80 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL---EE- 80 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH---HH-
Confidence 467778998 33222 22234679999999998876433210 001 1111 11
Q ss_pred CCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 203 PFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 203 p~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
. ..-|+|+.+- -+-......+++++...++|+..++.
T Consensus 81 -~--~~aD~Vieav-~e~~~~k~~v~~~l~~~~~~~~il~s 117 (295)
T PLN02545 81 -L--RDADFIIEAI-VESEDLKKKLFSELDRICKPSAILAS 117 (295)
T ss_pred -h--CCCCEEEEcC-ccCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 1 2347777642 22222235678888888888776553
No 453
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=22.79 E-value=47 Score=30.01 Aligned_cols=85 Identities=11% Similarity=0.128 Sum_probs=48.1
Q ss_pred eEEEECCC-cchh--ccCCCCCCeEEEEeCCHHHHhhCCCC-------------C----------cE-EEecCCCCCCCC
Q 021661 151 SILDLCSS-WVSH--FPPGYKQDRIVGMGMNEEELKRNPVL-------------T----------EY-VVQDLNLNPKLP 203 (309)
Q Consensus 151 ~ILDiGcG-~g~~--~~~~~~~~~v~giD~S~~~l~~a~~~-------------i----------~~-~~~D~~~~~~lp 203 (309)
+|-=||+| .|.. ...+..+.+|+++|++++.++.+.+. + .+ ...|. ..
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~---~~-- 79 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDL---DD-- 79 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH---HH--
Confidence 57778998 3322 22233356999999999988643210 0 11 11222 11
Q ss_pred CCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 204 FEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 204 ~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
-...|+|+-+- -+.+.-...+++++.+.++|+..++-
T Consensus 80 --~~~aDlVi~av-~e~~~~k~~~~~~l~~~~~~~~il~s 116 (282)
T PRK05808 80 --LKDADLVIEAA-TENMDLKKKIFAQLDEIAKPEAILAT 116 (282)
T ss_pred --hccCCeeeecc-cccHHHHHHHHHHHHhhCCCCcEEEE
Confidence 13468777652 22222235889999999998876643
No 454
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=22.58 E-value=3.6e+02 Score=24.96 Aligned_cols=88 Identities=14% Similarity=0.136 Sum_probs=50.4
Q ss_pred CCCCeEEEECCC-cchh---ccCCCCCC-eEEEEeCCHHHHhhCCCC-CcEEEecCCCCCC----C-C-CCCCceeEEEe
Q 021661 147 TPGVSILDLCSS-WVSH---FPPGYKQD-RIVGMGMNEEELKRNPVL-TEYVVQDLNLNPK----L-P-FEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~---~~~~~~~~-~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~----l-p-~~~~sfDlVis 214 (309)
.++.+||-.|+| .|.. +... .+. .|++++.++...+.+++. +.. ..+... .. + . .+...+|+|+.
T Consensus 181 ~~g~~vLI~g~g~vG~a~i~lak~-~G~~~Vi~~~~~~~~~~~~~~~g~~~-vv~~~~-~~~~~~l~~~~~~~~vd~vld 257 (363)
T cd08279 181 RPGDTVAVIGCGGVGLNAIQGARI-AGASRIIAVDPVPEKLELARRFGATH-TVNASE-DDAVEAVRDLTDGRGADYAFE 257 (363)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-cCCCcEEEEcCCHHHHHHHHHhCCeE-EeCCCC-ccHHHHHHHHcCCCCCCEEEE
Confidence 457888888886 3322 2222 345 499999888776665432 111 112100 01 1 0 12356898885
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
... ....+.++.+.|+++|.++.
T Consensus 258 ~~~------~~~~~~~~~~~l~~~G~~v~ 280 (363)
T cd08279 258 AVG------RAATIRQALAMTRKGGTAVV 280 (363)
T ss_pred cCC------ChHHHHHHHHHhhcCCeEEE
Confidence 432 12567888999999997754
No 455
>PRK04136 rpl40e 50S ribosomal protein L40e; Provisional
Probab=22.03 E-value=44 Score=22.02 Aligned_cols=24 Identities=13% Similarity=0.201 Sum_probs=20.5
Q ss_pred ccceeccccccccccccccccccc
Q 021661 26 YSTCLSCVSGVSKKSDCRRFKASR 49 (309)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~ 49 (309)
..+|--|+|+.+-.+-+||-|.+.
T Consensus 14 k~ICrkC~ARnp~~A~~CRKCg~~ 37 (48)
T PRK04136 14 KKICMRCNARNPWRATKCRKCGYK 37 (48)
T ss_pred ccchhcccCCCCccccccccCCCC
Confidence 468999999999999999977763
No 456
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=21.99 E-value=14 Score=29.09 Aligned_cols=34 Identities=9% Similarity=-0.004 Sum_probs=22.9
Q ss_pred cccceecccccc-ccccccccccccceeeeehhhH
Q 021661 25 GYSTCLSCVSGV-SKKSDCRRFKASRRLVVGLGAA 58 (309)
Q Consensus 25 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 58 (309)
...+|.+|.... ....|.|.+|.-.|....-.++
T Consensus 78 ~~~VC~~C~~~~~~~~~WlC~vC~k~rel~~~sG~ 112 (118)
T PF02318_consen 78 KHRVCKKCGVYSKKEPIWLCKVCQKQRELKKKSGE 112 (118)
T ss_dssp TEEEETTSEEETSSSCCEEEHHHHHHHHHHHHCSH
T ss_pred CccccCccCCcCCCCCCEEChhhHHHHHHHHHhhh
Confidence 345667776653 3456999999998888754433
No 457
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=21.95 E-value=4e+02 Score=23.84 Aligned_cols=89 Identities=17% Similarity=0.092 Sum_probs=50.1
Q ss_pred CCCCeEEEECC-C-cchhcc--CCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCC----CC--CCCCCceeEEEec
Q 021661 147 TPGVSILDLCS-S-WVSHFP--PGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNP----KL--PFEDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGc-G-~g~~~~--~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~----~l--p~~~~sfDlVis~ 215 (309)
.++.+||=.|+ | .|..+. ....+.+++.++-+++..+.+++. ++. ..+..... .+ ......+|+++.+
T Consensus 139 ~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 217 (334)
T PTZ00354 139 KKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKKLAAII-LIRYPDEEGFAPKVKKLTGEKGVNLVLDC 217 (334)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcE-EEecCChhHHHHHHHHHhCCCCceEEEEC
Confidence 45778888875 4 443221 122356777788888877766432 211 11110000 00 0123468999865
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
.. ...+..+.+.|+++|.++.
T Consensus 218 ~~-------~~~~~~~~~~l~~~g~~i~ 238 (334)
T PTZ00354 218 VG-------GSYLSETAEVLAVDGKWIV 238 (334)
T ss_pred Cc-------hHHHHHHHHHhccCCeEEE
Confidence 42 2577788999999997653
No 458
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=21.91 E-value=1.6e+02 Score=29.07 Aligned_cols=97 Identities=11% Similarity=0.020 Sum_probs=51.2
Q ss_pred CeEEEECCC-cchh----ccCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCC------CCCCCC----C--CCceeE
Q 021661 150 VSILDLCSS-WVSH----FPPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNL------NPKLPF----E--DNSFDV 211 (309)
Q Consensus 150 ~~ILDiGcG-~g~~----~~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~------~~~lp~----~--~~sfDl 211 (309)
++|.=+|.| .|.. +.....+.+|+|+|++++-++..++. ..+...++.. ...+.+ . -..-|+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 467778998 3322 22223357899999999988764332 1111000000 000100 0 122466
Q ss_pred EEecc--ch-------hccCC---HHHHHHHHHhhcccCcEEEEEec
Q 021661 212 ITNVV--SV-------DYLTK---PIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 212 Vis~~--vl-------~~l~d---~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
|+.+- -. .+-+| ...+.+++.+.|++|-+++++..
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~ST 128 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCC
Confidence 65432 11 11223 46889999999988777777644
No 459
>PRK10083 putative oxidoreductase; Provisional
Probab=21.90 E-value=1.3e+02 Score=27.36 Aligned_cols=90 Identities=11% Similarity=0.053 Sum_probs=49.3
Q ss_pred CCCCeEEEECCC-cchhc---cCCCCCC-eEEEEeCCHHHHhhCCCC-CcEEEecCCC---CCCCCCCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSS-WVSHF---PPGYKQD-RIVGMGMNEEELKRNPVL-TEYVVQDLNL---NPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~~---~~~~~~~-~v~giD~S~~~l~~a~~~-i~~~~~D~~~---~~~lp~~~~sfDlVis~~v 217 (309)
.++.+||=.|+| .|... .....+. .++++|.+++-++.+++. ++.+ .|... .+.++-....+|+|+....
T Consensus 159 ~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~-i~~~~~~~~~~~~~~g~~~d~vid~~g 237 (339)
T PRK10083 159 TEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWV-INNAQEPLGEALEEKGIKPTLIIDAAC 237 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEE-ecCccccHHHHHhcCCCCCCEEEECCC
Confidence 457889989987 33222 2221244 588999998877766543 2211 11100 0111111122457665332
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
. ...+.+..+.|+++|.++.
T Consensus 238 -----~-~~~~~~~~~~l~~~G~~v~ 257 (339)
T PRK10083 238 -----H-PSILEEAVTLASPAARIVL 257 (339)
T ss_pred -----C-HHHHHHHHHHhhcCCEEEE
Confidence 1 2467888999999997654
No 460
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=21.86 E-value=1.3e+02 Score=27.79 Aligned_cols=98 Identities=18% Similarity=0.088 Sum_probs=62.0
Q ss_pred CCCCeEEEECCC--cchhccCCCCCCeEEEEeCCHHHHhhCC--------CCCcEEEecCCCCCCCCC-CCCceeEEEec
Q 021661 147 TPGVSILDLCSS--WVSHFPPGYKQDRIVGMGMNEEELKRNP--------VLTEYVVQDLNLNPKLPF-EDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG--~g~~~~~~~~~~~v~giD~S~~~l~~a~--------~~i~~~~~D~~~~~~lp~-~~~sfDlVis~ 215 (309)
..+..|+=+|-- ++..+.+.....+|..+|+.+..+..-. .+++.+..|+. ..+|- -.+.||+.+.-
T Consensus 151 L~gK~I~vvGDDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr--~plpe~~~~kFDvfiTD 228 (354)
T COG1568 151 LEGKEIFVVGDDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLR--NPLPEDLKRKFDVFITD 228 (354)
T ss_pred cCCCeEEEEcCchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhc--ccChHHHHhhCCeeecC
Confidence 447789999964 5555555555668999999999886422 24888999983 23331 12579988753
Q ss_pred cchhccCCHHHHHHHHHhhcccC---cEEEEEecC
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPG---GLAIVSFSN 247 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpG---G~lii~~~~ 247 (309)
- -+.++....++..=...||.- |++-|+...
T Consensus 229 P-peTi~alk~FlgRGI~tLkg~~~aGyfgiT~re 262 (354)
T COG1568 229 P-PETIKALKLFLGRGIATLKGEGCAGYFGITRRE 262 (354)
T ss_pred c-hhhHHHHHHHHhccHHHhcCCCccceEeeeecc
Confidence 2 122233345565556677765 677776543
No 461
>PLN02494 adenosylhomocysteinase
Probab=21.78 E-value=82 Score=31.20 Aligned_cols=85 Identities=6% Similarity=-0.031 Sum_probs=49.6
Q ss_pred CCCCeEEEECCC-cchhccC--CCCCCeEEEEeCCHHHHhhCCC-CCcEEEecCCCCCCCCCCCCceeEEEeccchhccC
Q 021661 147 TPGVSILDLCSS-WVSHFPP--GYKQDRIVGMGMNEEELKRNPV-LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT 222 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~~~~--~~~~~~v~giD~S~~~l~~a~~-~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~ 222 (309)
..+.+|+=+|+| .|..+.. ..-+.+|+++|.++.-...+.. .... .++ ++. . ...|+|+....-.
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~v--v~l---eEa-l--~~ADVVI~tTGt~--- 320 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQV--LTL---EDV-V--SEADIFVTTTGNK--- 320 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCee--ccH---HHH-H--hhCCEEEECCCCc---
Confidence 348899999999 4432221 2236689999998864333322 1221 233 221 1 2479998743222
Q ss_pred CHHHHHHHHHhhcccCcEEEEE
Q 021661 223 KPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 223 d~~~~l~~i~rvLkpGG~lii~ 244 (309)
.-+..+....||+||.++..
T Consensus 321 --~vI~~e~L~~MK~GAiLiNv 340 (477)
T PLN02494 321 --DIIMVDHMRKMKNNAIVCNI 340 (477)
T ss_pred --cchHHHHHhcCCCCCEEEEc
Confidence 22347788899999988764
No 462
>KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.72 E-value=45 Score=34.27 Aligned_cols=40 Identities=28% Similarity=0.365 Sum_probs=26.8
Q ss_pred eeceecCCCcccccCccccceeccccc--------cccccccccccccceee
Q 021661 9 LQQRHRLPPVSTGVSSGYSTCLSCVSG--------VSKKSDCRRFKASRRLV 52 (309)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 52 (309)
|++|..+|++--+ --.|..|.|. +..+.|.|+||..|-.+
T Consensus 40 l~e~~~~~~~~y~----P~~C~~C~AvlNPyc~vd~~a~~W~CpfC~qrN~~ 87 (745)
T KOG1986|consen 40 LKERPDLPPIQYD----PLRCSKCGAVLNPYCSVDFRAKSWICPFCNQRNPF 87 (745)
T ss_pred cccCCCCCccCCC----CchhccchhhcCcceeecccCceEeccccccCCCC
Confidence 5667777766433 2358888775 44556999999987643
No 463
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=21.68 E-value=1.3e+02 Score=30.60 Aligned_cols=71 Identities=10% Similarity=-0.146 Sum_probs=41.6
Q ss_pred CCCeEEEECCC--cchhcc--CCCCCCeEEEEeCCHHHHhhC----------------CCCCcEEEecCCCCCCCCCCCC
Q 021661 148 PGVSILDLCSS--WVSHFP--PGYKQDRIVGMGMNEEELKRN----------------PVLTEYVVQDLNLNPKLPFEDN 207 (309)
Q Consensus 148 ~~~~ILDiGcG--~g~~~~--~~~~~~~v~giD~S~~~l~~a----------------~~~i~~~~~D~~~~~~lp~~~~ 207 (309)
.+..||=.|+. .|..+. ++..+.+|++++.+.+-++.. ..++.++++|+...+.+.-.-+
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLg 158 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPALG 158 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHhc
Confidence 36788888873 454332 223467899999887654321 1236789999932112211124
Q ss_pred ceeEEEeccch
Q 021661 208 SFDVITNVVSV 218 (309)
Q Consensus 208 sfDlVis~~vl 218 (309)
..|+||++...
T Consensus 159 giDiVVn~AG~ 169 (576)
T PLN03209 159 NASVVICCIGA 169 (576)
T ss_pred CCCEEEEcccc
Confidence 58998887543
No 464
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=21.65 E-value=1e+02 Score=32.39 Aligned_cols=89 Identities=16% Similarity=0.087 Sum_probs=54.8
Q ss_pred CeEEEECCCc-c--hhccCCCCCCeEEEEeCCHHHHhhCCCCC----------------------cEEE--ecCCCCCCC
Q 021661 150 VSILDLCSSW-V--SHFPPGYKQDRIVGMGMNEEELKRNPVLT----------------------EYVV--QDLNLNPKL 202 (309)
Q Consensus 150 ~~ILDiGcG~-g--~~~~~~~~~~~v~giD~S~~~l~~a~~~i----------------------~~~~--~D~~~~~~l 202 (309)
.+|-=||+|+ | .....+..+..|+..|.+++.++.+.+++ .-+. .|+ ..+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~---~~~ 412 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY---SGF 412 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH---HHh
Confidence 4677789982 3 33334455889999999999988654421 0111 111 111
Q ss_pred CCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 203 PFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 203 p~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
..-|+|+=. +.+.+.-..++++++.++++|+..|.-.++
T Consensus 413 ----~~aDlViEA-v~E~l~~K~~vf~~l~~~~~~~~ilasNTS 451 (737)
T TIGR02441 413 ----KNADMVIEA-VFEDLSLKHKVIKEVEAVVPPHCIIASNTS 451 (737)
T ss_pred ----ccCCeehhh-ccccHHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence 234655533 344444456899999999999987765444
No 465
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=21.61 E-value=2.5e+02 Score=23.27 Aligned_cols=87 Identities=14% Similarity=0.064 Sum_probs=36.3
Q ss_pred CCeEEEECCCcc-hhccC---CCCCCeEEEEeCCHHHHhhCCC--CCcEEEecCCCCCCCCCCCCceeEEEeccchhccC
Q 021661 149 GVSILDLCSSWV-SHFPP---GYKQDRIVGMGMNEEELKRNPV--LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT 222 (309)
Q Consensus 149 ~~~ILDiGcG~g-~~~~~---~~~~~~v~giD~S~~~l~~a~~--~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~ 222 (309)
+.+|.=.|+|.. ..+.. ..+..-...+|.++.= +.+- ....-..+. +.+ .....|.|+... -.
T Consensus 68 gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~K--~G~~~PGt~ipI~~p---~~l--~~~~pd~vivla-w~--- 136 (160)
T PF08484_consen 68 GKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPLK--QGKYLPGTHIPIVSP---EEL--KERKPDYVIVLA-WN--- 136 (160)
T ss_dssp T--EEEE---SHHHHHHHHHT--TTTS--EEES-GGG--TTEE-TTT--EEEEG---GG----SS--SEEEES--GG---
T ss_pred CCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChhh--cCcccCCCCCeECCH---HHH--hhCCCCEEEEcC-hh---
Confidence 788999999843 22221 1112234567877541 1110 012222222 222 234567766532 12
Q ss_pred CHHHHHHHHHhhcccCcEEEEEec
Q 021661 223 KPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 223 d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
-.+++++++...++.||.+++-+|
T Consensus 137 y~~EI~~~~~~~~~~gg~fi~plP 160 (160)
T PF08484_consen 137 YKDEIIEKLREYLERGGKFIVPLP 160 (160)
T ss_dssp GHHHHHHHTHHHHHTT-EEEE-SS
T ss_pred hHHHHHHHHHHHHhcCCEEEEeCC
Confidence 246788888888899999987543
No 466
>PLN02702 L-idonate 5-dehydrogenase
Probab=21.61 E-value=3.6e+02 Score=24.97 Aligned_cols=90 Identities=17% Similarity=0.218 Sum_probs=50.1
Q ss_pred CCCCeEEEECCC-cchh---ccCCCCCCeEEEEeCCHHHHhhCCCC-CcEEE-ecCCCCCCCC--------CCCCceeEE
Q 021661 147 TPGVSILDLCSS-WVSH---FPPGYKQDRIVGMGMNEEELKRNPVL-TEYVV-QDLNLNPKLP--------FEDNSFDVI 212 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~-~D~~~~~~lp--------~~~~sfDlV 212 (309)
.++.+||=+|+| .|.. +........|+++|.++...+.+++. ++... .+... .+++ ...+.+|+|
T Consensus 180 ~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~v 258 (364)
T PLN02702 180 GPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVSTNI-EDVESEVEEIQKAMGGGIDVS 258 (364)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEecCccc-ccHHHHHHHHhhhcCCCCCEE
Confidence 457788888886 3322 22232223589999988777765542 22111 11100 0110 112458888
Q ss_pred EeccchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 213 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 213 is~~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
+-... . ...+.++.+.|+++|.++.
T Consensus 259 id~~g-----~-~~~~~~~~~~l~~~G~~v~ 283 (364)
T PLN02702 259 FDCVG-----F-NKTMSTALEATRAGGKVCL 283 (364)
T ss_pred EECCC-----C-HHHHHHHHHHHhcCCEEEE
Confidence 76421 1 2468889999999997653
No 467
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=21.57 E-value=33 Score=19.76 Aligned_cols=12 Identities=33% Similarity=0.686 Sum_probs=6.1
Q ss_pred ceeccccccccc
Q 021661 28 TCLSCVSGVSKK 39 (309)
Q Consensus 28 ~~~~~~~~~~~~ 39 (309)
.|++|++.+...
T Consensus 1 ~CP~C~s~l~~~ 12 (28)
T PF03119_consen 1 TCPVCGSKLVRE 12 (28)
T ss_dssp B-TTT--BEEE-
T ss_pred CcCCCCCEeEcC
Confidence 489999988743
No 468
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=21.50 E-value=2.6e+02 Score=25.57 Aligned_cols=88 Identities=14% Similarity=0.154 Sum_probs=48.4
Q ss_pred CCCCeEEEECCC-cchh---ccCCCCCC-eEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCCC-----CCCCceeEEEec
Q 021661 147 TPGVSILDLCSS-WVSH---FPPGYKQD-RIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLP-----FEDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~---~~~~~~~~-~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~lp-----~~~~sfDlVis~ 215 (309)
.++.+||-.|+| .|.. +... .+. +|++++-+++-.+.+++. ++. ..+... .+.. ...+.+|+|+.+
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~-~G~~~v~~~~~~~~~~~~~~~~g~~~-~~~~~~-~~~~~~~~~~~~~~vd~vld~ 238 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKA-AGASLVIASDPNPYRLELAKKMGADV-VINPRE-EDVVEVKSVTDGTGVDVVLEM 238 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-cCCcEEEEECCCHHHHHHHHHhCcce-eeCccc-ccHHHHHHHcCCCCCCEEEEC
Confidence 347788888876 2322 2222 345 688888777655544432 111 111100 1110 123468999864
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
.. ....+.++.+.|+++|.++.
T Consensus 239 ~g------~~~~~~~~~~~l~~~G~~v~ 260 (341)
T cd05281 239 SG------NPKAIEQGLKALTPGGRVSI 260 (341)
T ss_pred CC------CHHHHHHHHHHhccCCEEEE
Confidence 32 13457788899999998764
No 469
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=21.49 E-value=80 Score=29.52 Aligned_cols=96 Identities=11% Similarity=-0.001 Sum_probs=50.5
Q ss_pred CeEEEECCC-cch--hccCCCCCCeEEEEeCCHHHHhhCCCCCc----------EEEec----CCCCCCCCCCCCceeEE
Q 021661 150 VSILDLCSS-WVS--HFPPGYKQDRIVGMGMNEEELKRNPVLTE----------YVVQD----LNLNPKLPFEDNSFDVI 212 (309)
Q Consensus 150 ~~ILDiGcG-~g~--~~~~~~~~~~v~giD~S~~~l~~a~~~i~----------~~~~D----~~~~~~lp~~~~sfDlV 212 (309)
.+|-=||+| .|. ....+..+.+|+..|++++.++.++..+. ..... +....++.-.-..-|+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 578888998 332 22334458899999999987765433110 00000 00000110001234666
Q ss_pred EeccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 213 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 213 is~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
+-+ +.+.+.-...+++++.+.++|+-.+.-+++
T Consensus 88 iEa-vpE~l~vK~~lf~~l~~~~~~~aIlaSnTS 120 (321)
T PRK07066 88 QES-APEREALKLELHERISRAAKPDAIIASSTS 120 (321)
T ss_pred EEC-CcCCHHHHHHHHHHHHHhCCCCeEEEECCC
Confidence 543 233333345788999999999874443333
No 470
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=21.45 E-value=1.9e+02 Score=25.57 Aligned_cols=88 Identities=18% Similarity=0.211 Sum_probs=48.3
Q ss_pred CCCeEEEECCCcc---hhc----cCCCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCC-CCCCCCcee
Q 021661 148 PGVSILDLCSSWV---SHF----PPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPK-LPFEDNSFD 210 (309)
Q Consensus 148 ~~~~ILDiGcG~g---~~~----~~~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~-lp~~~~sfD 210 (309)
....|++++|+.+ ..+ +....++++++|-+.+..+...++ .++|+.++.. +. ++ .-...|
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~--e~~~~-~~~~iD 117 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAP--EEVMP-GLKGID 117 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCH--HHHHh-hccCCC
Confidence 3578999965422 122 223457899999998776542221 2688888841 22 22 223477
Q ss_pred EEEeccchhccCCHHHHHHHHHhhcc--cCcEEEEE
Q 021661 211 VITNVVSVDYLTKPIEVFKEMCQVLK--PGGLAIVS 244 (309)
Q Consensus 211 lVis~~vl~~l~d~~~~l~~i~rvLk--pGG~lii~ 244 (309)
.++...= .+++.+++.+.++ |.|-+++-
T Consensus 118 F~vVDc~------~~d~~~~vl~~~~~~~~GaVVV~ 147 (218)
T PF07279_consen 118 FVVVDCK------REDFAARVLRAAKLSPRGAVVVC 147 (218)
T ss_pred EEEEeCC------chhHHHHHHHHhccCCCceEEEE
Confidence 7775442 2333334444444 55766654
No 471
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=21.30 E-value=4.7e+02 Score=24.37 Aligned_cols=94 Identities=16% Similarity=0.142 Sum_probs=54.0
Q ss_pred CCCCeEEEECCC-cchh---ccCCCCCC-eEEEEeCCHHHHhhCCCCCcEEEecCCCCCCC-----CCCCCceeEEEecc
Q 021661 147 TPGVSILDLCSS-WVSH---FPPGYKQD-RIVGMGMNEEELKRNPVLTEYVVQDLNLNPKL-----PFEDNSFDVITNVV 216 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~---~~~~~~~~-~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~l-----p~~~~sfDlVis~~ 216 (309)
.++.+||=.|+| .|.. +..+. +. +|+++|.++.-.+.+++.-- ...|... ... .+..+.+|+|+-..
T Consensus 175 ~~g~~vlI~g~g~vg~~~~~~a~~~-G~~~vi~~~~~~~~~~~~~~~g~-~~v~~~~-~~~~~~i~~~~~~~~d~v~d~~ 251 (375)
T cd08282 175 QPGDTVAVFGAGPVGLMAAYSAILR-GASRVYVVDHVPERLDLAESIGA-IPIDFSD-GDPVEQILGLEPGGVDRAVDCV 251 (375)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHcCC-eEeccCc-ccHHHHHHHhhCCCCCEEEECC
Confidence 457788888887 3322 22222 44 78899999887776654311 1123310 110 11124589998653
Q ss_pred chhc----c-CCHHHHHHHHHhhcccCcEEEE
Q 021661 217 SVDY----L-TKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 217 vl~~----l-~d~~~~l~~i~rvLkpGG~lii 243 (309)
.-.- . .+....+.++.++|+++|.+++
T Consensus 252 g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 283 (375)
T cd08282 252 GYEARDRGGEAQPNLVLNQLIRVTRPGGGIGI 283 (375)
T ss_pred CCcccccccccchHHHHHHHHHHhhcCcEEEE
Confidence 3110 1 1344678899999999998754
No 472
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=21.10 E-value=64 Score=33.00 Aligned_cols=95 Identities=16% Similarity=0.220 Sum_probs=53.3
Q ss_pred CCCCeEEEECCCcchhc---cCC-CCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCC-CCCC----CCCCceeEEEecc-
Q 021661 147 TPGVSILDLCSSWVSHF---PPG-YKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLN-PKLP----FEDNSFDVITNVV- 216 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~-~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~-~~lp----~~~~sfDlVis~~- 216 (309)
.+...|||+||-.|..+ ... ..+.-|+|+|+-|-- -..++..++.|+... +..+ ...-..|+|+.-.
T Consensus 43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik---p~~~c~t~v~dIttd~cr~~l~k~l~t~~advVLhDga 119 (780)
T KOG1098|consen 43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK---PIPNCDTLVEDITTDECRSKLRKILKTWKADVVLHDGA 119 (780)
T ss_pred cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc---cCCccchhhhhhhHHHHHHHHHHHHHhCCCcEEeecCC
Confidence 45789999999655432 222 346689999997641 112244455555211 1122 1223458887532
Q ss_pred ---chhccCCH-------HHHHHHHHhhcccCcEEEEE
Q 021661 217 ---SVDYLTKP-------IEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 217 ---vl~~l~d~-------~~~l~~i~rvLkpGG~lii~ 244 (309)
...|+.|. -.+|+-+...|..||.++-.
T Consensus 120 pnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtk 157 (780)
T KOG1098|consen 120 PNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTK 157 (780)
T ss_pred CccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccc
Confidence 23333332 24566677888999986543
No 473
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=21.08 E-value=3.2e+02 Score=24.91 Aligned_cols=88 Identities=16% Similarity=0.130 Sum_probs=49.9
Q ss_pred CCCeEEEECCC-cchh---ccCCCCCC-eEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCC-----C-CCCCceeEEEec
Q 021661 148 PGVSILDLCSS-WVSH---FPPGYKQD-RIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKL-----P-FEDNSFDVITNV 215 (309)
Q Consensus 148 ~~~~ILDiGcG-~g~~---~~~~~~~~-~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~l-----p-~~~~sfDlVis~ 215 (309)
++.+||-.|+| .|.. +... .+. +|++++.+++..+.+++. .+. ..|... .++ . .....+|+|+..
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~-~G~~~v~~~~~~~~~~~~~~~lg~~~-~~~~~~-~~~~~~~~~~~~~~~~d~v~d~ 239 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKH-VGARHVVITDVNEYRLELARKMGATR-AVNVAK-EDLRDVMAELGMTEGFDVGLEM 239 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCHHHHHHHHHhCCcE-EecCcc-ccHHHHHHHhcCCCCCCEEEEC
Confidence 47788888876 3322 2222 344 688888888766654432 111 122210 110 0 123468998864
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
.. ....+..+.+.|+++|.++.-
T Consensus 240 ~g------~~~~~~~~~~~l~~~G~~v~~ 262 (341)
T PRK05396 240 SG------APSAFRQMLDNMNHGGRIAML 262 (341)
T ss_pred CC------CHHHHHHHHHHHhcCCEEEEE
Confidence 32 135778889999999976553
No 474
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=20.94 E-value=1.2e+02 Score=29.42 Aligned_cols=97 Identities=10% Similarity=-0.032 Sum_probs=48.9
Q ss_pred CCCCeEEEECCC-cchhc---cCCCCCCeEEEEeCCHHHHh-hCCCCCcEEEecCCCCCCCCCCCCceeEEEeccchh-c
Q 021661 147 TPGVSILDLCSS-WVSHF---PPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVD-Y 220 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~~---~~~~~~~~v~giD~S~~~l~-~a~~~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~-~ 220 (309)
.++.+|+=+|+| .|... .......+|+.++.+.+..+ .+++. .....+. .+++-.-..+|+|++...-. +
T Consensus 178 l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~-g~~~i~~---~~l~~~l~~aDvVi~aT~s~~~ 253 (417)
T TIGR01035 178 LKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKEL-GGEAVKF---EDLEEYLAEADIVISSTGAPHP 253 (417)
T ss_pred ccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc-CCeEeeH---HHHHHHHhhCCEEEECCCCCCc
Confidence 347899999999 44222 12222368999999976543 33321 1011122 11111113589999875332 2
Q ss_pred cCCHHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 221 LTKPIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 221 l~d~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
+-+ .+.++.+.+- ++++.++++...|.
T Consensus 254 ii~-~e~l~~~~~~-~~~~~~viDla~Pr 280 (417)
T TIGR01035 254 IVS-KEDVERALRE-RTRPLFIIDIAVPR 280 (417)
T ss_pred eEc-HHHHHHHHhc-CCCCeEEEEeCCCC
Confidence 222 2333333211 23457888876643
No 475
>PRK11823 DNA repair protein RadA; Provisional
Probab=20.89 E-value=41 Score=32.98 Aligned_cols=27 Identities=15% Similarity=0.077 Sum_probs=21.6
Q ss_pred cceeccccccccccccccccccceeee
Q 021661 27 STCLSCVSGVSKKSDCRRFKASRRLVV 53 (309)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (309)
-+|.+|+.....--|+||.|..--...
T Consensus 8 y~C~~Cg~~~~~~~g~Cp~C~~w~t~~ 34 (446)
T PRK11823 8 YVCQECGAESPKWLGRCPECGAWNTLV 34 (446)
T ss_pred EECCcCCCCCcccCeeCcCCCCcccee
Confidence 369999999998889999997644443
No 476
>PRK08267 short chain dehydrogenase; Provisional
Probab=20.78 E-value=1.9e+02 Score=25.16 Aligned_cols=68 Identities=16% Similarity=0.039 Sum_probs=41.1
Q ss_pred eEEEECCC--cchhcc--CCCCCCeEEEEeCCHHHHhhCC-----CCCcEEEecCCCCCCCC-----C--C-CCceeEEE
Q 021661 151 SILDLCSS--WVSHFP--PGYKQDRIVGMGMNEEELKRNP-----VLTEYVVQDLNLNPKLP-----F--E-DNSFDVIT 213 (309)
Q Consensus 151 ~ILDiGcG--~g~~~~--~~~~~~~v~giD~S~~~l~~a~-----~~i~~~~~D~~~~~~lp-----~--~-~~sfDlVi 213 (309)
++|=.|++ .|..+. ....+.+|+.+|.+++.++... .++.++++|+.....+. . . .+.+|+|+
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~vi 82 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDVLF 82 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCEEE
Confidence 67888875 333322 2234679999999887665332 24788999994221111 0 0 35689999
Q ss_pred eccch
Q 021661 214 NVVSV 218 (309)
Q Consensus 214 s~~vl 218 (309)
.+...
T Consensus 83 ~~ag~ 87 (260)
T PRK08267 83 NNAGI 87 (260)
T ss_pred ECCCC
Confidence 77544
No 477
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=20.52 E-value=3.2e+02 Score=24.53 Aligned_cols=93 Identities=9% Similarity=-0.020 Sum_probs=47.7
Q ss_pred CeEEEECCC-cchhcc--CCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCC------CCCCCCCCCCceeEEEeccchh
Q 021661 150 VSILDLCSS-WVSHFP--PGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLN------LNPKLPFEDNSFDVITNVVSVD 219 (309)
Q Consensus 150 ~~ILDiGcG-~g~~~~--~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~------~~~~lp~~~~sfDlVis~~vl~ 219 (309)
++|+=+|+| .|..+. ....+.+|+.++. ++.++..++. +.....+.. ...+.......+|+|+...--
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~- 78 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKA- 78 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecc-
Confidence 367788998 443322 1223568999998 5555443332 211111100 001111112468988765321
Q ss_pred ccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 220 YLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 220 ~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
.+.+.+++++...++++.. ++...|
T Consensus 79 --~~~~~~~~~l~~~~~~~~~-ii~~~n 103 (305)
T PRK12921 79 --YQLDAAIPDLKPLVGEDTV-IIPLQN 103 (305)
T ss_pred --cCHHHHHHHHHhhcCCCCE-EEEeeC
Confidence 2467788888888877654 444444
No 478
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=20.52 E-value=1.1e+02 Score=28.14 Aligned_cols=89 Identities=12% Similarity=0.058 Sum_probs=51.3
Q ss_pred CCCCeEEEECCC-cchhc--cCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCCC---CCCCceeEEEeccchh
Q 021661 147 TPGVSILDLCSS-WVSHF--PPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLP---FEDNSFDVITNVVSVD 219 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~~--~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~lp---~~~~sfDlVis~~vl~ 219 (309)
.++.+||=.|+| .|..+ .....+.+|+.++.+++-++.+++. ++.+ .+... ..+. .....+|+|+....
T Consensus 162 ~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~-i~~~~-~~~~~~~~~~~~~d~vi~~~g-- 237 (333)
T cd08296 162 KPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHHY-IDTSK-EDVAEALQELGGAKLILATAP-- 237 (333)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcEE-ecCCC-ccHHHHHHhcCCCCEEEECCC--
Confidence 457889988976 33222 1112356899999998877776543 2211 12200 1110 00134788885321
Q ss_pred ccCCHHHHHHHHHhhcccCcEEEE
Q 021661 220 YLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 220 ~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
....+.++.+.|+++|.++.
T Consensus 238 ----~~~~~~~~~~~l~~~G~~v~ 257 (333)
T cd08296 238 ----NAKAISALVGGLAPRGKLLI 257 (333)
T ss_pred ----chHHHHHHHHHcccCCEEEE
Confidence 13578888999999997654
No 479
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=20.47 E-value=2.4e+02 Score=25.26 Aligned_cols=92 Identities=11% Similarity=0.042 Sum_probs=49.4
Q ss_pred eEEEECCC-cchhccC--CCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCC----CCCCCCCCCCceeEEEeccchhccC
Q 021661 151 SILDLCSS-WVSHFPP--GYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLN----LNPKLPFEDNSFDVITNVVSVDYLT 222 (309)
Q Consensus 151 ~ILDiGcG-~g~~~~~--~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~----~~~~lp~~~~sfDlVis~~vl~~l~ 222 (309)
+|+=||+| .|..+.. ...+.+|+.+|.+++.++..++. .....++.. ...+.. +...+|+|+...-- .
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~d~vila~k~---~ 77 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPA-ELGPQDLVILAVKA---Y 77 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChh-HcCCCCEEEEeccc---c
Confidence 67888998 4433321 22356899999877665543322 211011110 001111 11568988876432 2
Q ss_pred CHHHHHHHHHhhcccCcEEEEEecC
Q 021661 223 KPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 223 d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+...+++.+...+.++..++ ...|
T Consensus 78 ~~~~~~~~l~~~l~~~~~iv-~~~n 101 (304)
T PRK06522 78 QLPAALPSLAPLLGPDTPVL-FLQN 101 (304)
T ss_pred cHHHHHHHHhhhcCCCCEEE-EecC
Confidence 45778888888887765544 3444
No 480
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=20.40 E-value=3.6e+02 Score=24.93 Aligned_cols=88 Identities=22% Similarity=0.320 Sum_probs=49.6
Q ss_pred CCCCeEEEECCC-cchh---ccCCCCCCe-EEEEeCCHHHHhhCCCC-CcEEEecCCCCCCC------CCCCCceeEEEe
Q 021661 147 TPGVSILDLCSS-WVSH---FPPGYKQDR-IVGMGMNEEELKRNPVL-TEYVVQDLNLNPKL------PFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~---~~~~~~~~~-v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~l------p~~~~sfDlVis 214 (309)
.++.+||=.|+| .|.. +... .+.+ |++++-+++..+.+++. ++.+ .|... ... ...+..+|+|+.
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~-~G~~~vi~~~~s~~~~~~~~~~g~~~v-~~~~~-~~~~~~l~~~~~~~~~d~vld 262 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKA-FGASPIIAVDVRDEKLAKAKELGATHT-VNAAK-EDAVAAIREITGGRGVDVVVE 262 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHHhCCceE-ecCCc-ccHHHHHHHHhCCCCCCEEEE
Confidence 346778877876 3322 2222 3455 99999988877765432 2111 11100 111 012356899886
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
... .. ..+.++.+.|+++|.++.
T Consensus 263 ~vg-----~~-~~~~~~~~~l~~~G~~v~ 285 (367)
T cd08263 263 ALG-----KP-ETFKLALDVVRDGGRAVV 285 (367)
T ss_pred eCC-----CH-HHHHHHHHHHhcCCEEEE
Confidence 421 21 367888999999997654
No 481
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=20.27 E-value=1.1e+02 Score=25.90 Aligned_cols=87 Identities=14% Similarity=0.082 Sum_probs=48.8
Q ss_pred EEEECCC-cc--hhccCCCCCCeEEEEeCCHHHHhhCCCCC------------------------cEEEecCCCCCCCCC
Q 021661 152 ILDLCSS-WV--SHFPPGYKQDRIVGMGMNEEELKRNPVLT------------------------EYVVQDLNLNPKLPF 204 (309)
Q Consensus 152 ILDiGcG-~g--~~~~~~~~~~~v~giD~S~~~l~~a~~~i------------------------~~~~~D~~~~~~lp~ 204 (309)
|-=||+| .| .....+..+.+|+.+|.+++.++.+++.+ --...|+ +.+
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl---~~~-- 76 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDL---EEA-- 76 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSG---GGG--
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCH---HHH--
Confidence 5557998 33 22333345889999999999887654420 0123333 222
Q ss_pred CCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 205 EDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 205 ~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
. ..|+|+=+- .+.+.-..++++++.+++.|+-.|.-.++
T Consensus 77 -~-~adlViEai-~E~l~~K~~~~~~l~~~~~~~~ilasnTS 115 (180)
T PF02737_consen 77 -V-DADLVIEAI-PEDLELKQELFAELDEICPPDTILASNTS 115 (180)
T ss_dssp -C-TESEEEE-S--SSHHHHHHHHHHHHCCS-TTSEEEE--S
T ss_pred -h-hhheehhhc-cccHHHHHHHHHHHHHHhCCCceEEecCC
Confidence 1 467776432 33333446899999999988887766544
Done!