Query 021662
Match_columns 309
No_of_seqs 50 out of 52
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 07:26:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021662.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021662hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_I STA, cytochrome C oxida 65.3 1.6 5.5E-05 33.6 0.5 24 280-306 48-71 (73)
2 3arc_A Photosystem Q(B) protei 50.2 26 0.0009 33.8 6.1 88 9-106 79-166 (344)
3 1eys_L Photosynthetic reaction 40.9 60 0.002 30.6 6.8 59 46-106 90-148 (280)
4 2wjn_M Reaction center protein 29.4 1.2E+02 0.0042 29.1 7.0 59 46-106 110-168 (324)
5 2k9p_A Pheromone alpha factor 24.1 99 0.0034 23.8 4.5 25 78-106 45-69 (80)
6 1eys_M Photosynthetic reaction 23.5 1.8E+02 0.0061 27.9 6.9 60 45-106 109-168 (324)
7 2wjn_L Reaction center protein 23.0 2E+02 0.0069 27.0 7.1 60 45-106 82-141 (274)
8 1btq_A BAND 3 anion transport 22.6 24 0.00083 22.2 0.6 17 259-275 3-19 (26)
9 1rzh_L Reaction center protein 22.5 1.8E+02 0.0063 27.3 6.7 59 46-106 82-140 (281)
10 3gia_A Uncharacterized protein 22.1 72 0.0025 28.9 3.9 22 203-225 352-373 (444)
No 1
>1v54_I STA, cytochrome C oxidase polypeptide VIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.3.1 PDB: 1oco_I* 1occ_I* 1ocz_I* 1ocr_I* 1v55_I* 2dyr_I* 2dys_I* 2eij_I* 2eik_I* 2eil_I* 2eim_I* 2ein_I* 2occ_I* 2ybb_T* 2zxw_I* 3abk_I* 3abl_I* 3abm_I* 3ag1_I* 3ag2_I* ...
Probab=65.31 E-value=1.6 Score=33.60 Aligned_cols=24 Identities=33% Similarity=0.717 Sum_probs=18.5
Q ss_pred HhhhcccccccchhhhhhhhccccCCC
Q 021662 280 ADFFQEENFLLDNAYYSEMKDAGFFDA 306 (309)
Q Consensus 280 adFF~~e~~~~~~~yYSemkDag~fd~ 306 (309)
+||+++=|++- -|.|||++|+|+.
T Consensus 48 adFYknYD~~k---~ferMk~aG~fqS 71 (73)
T 1v54_I 48 ADFYRNYDSMK---DFEEMRKAGIFQS 71 (73)
T ss_dssp HHHHHTCCHHH---HHHHHHHTTCCSS
T ss_pred HHHHHhcCcHH---HHHHHHHcccccc
Confidence 56777777543 3899999999974
No 2
>3arc_A Photosystem Q(B) protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1w5c_A* 3bz1_A* 1s5l_A* 2axt_A* 3bz2_A* 3kzi_A* 3prq_A* 3prr_A* 1izl_A* 3a0b_A* 3a0h_A*
Probab=50.17 E-value=26 Score=33.85 Aligned_cols=88 Identities=20% Similarity=0.117 Sum_probs=65.5
Q ss_pred eeeeeeccceeeecCCCcccCCCCcccccCccccccccceehhhHHHhhHHHHHHHHHHhhhhhhhccccCCchHHHHHH
Q 021662 9 TINVTTASESFSVSLPPIAELPFPVKSIGGNESVRQCHGVLYDAALVVPTVLFVLYLVVHAKKNLTKLCNGRSYIMISYY 88 (309)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~c~g~~wDv~LlvPn~LFllFL~~~~~~s~~KL~~t~SpI~~tyY 88 (309)
++.+.+.+.+...++||+.|-. .-.+|+++. =+|-.+.+--.+-++.+.+-+-.+|+ --..|-+|-.+|=
T Consensus 79 ~lav~PP~~~yGL~~~PLwe~~------~~~~wL~~G--G~w~~i~~~~~~~v~~w~~R~~e~ar--~LGmg~hia~AFs 148 (344)
T 3arc_A 79 TGAVVPSSNAIGLHFYPIWEAA------SLDEWLYNG--GPYQLIIFHFLLGASCYMGRQWELSY--RLGMRPWICVAYS 148 (344)
T ss_dssp TCEECCCCTTTTTCCCCGGGSS------SHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCCSTHHHHHH
T ss_pred eEeeCCCChhhccccCCccccc------hhhhhhhCC--CcHHHHHHHHHHHHHHHHHHHHHHHH--HhCCchHHHHHHH
Confidence 4556677777778888887644 334588764 46877776666667777766665553 3466779999999
Q ss_pred HHHHHHHHHHHHHhHhhc
Q 021662 89 ALLWLACVLNLAWCSLQG 106 (309)
Q Consensus 89 ~ll~~v~llnl~rc~vsm 106 (309)
+-+|+...+.++|=+.|-
T Consensus 149 aaI~~~~~l~lirPi~mG 166 (344)
T 3arc_A 149 APLASAFAVFLIYPIGQG 166 (344)
T ss_dssp HHHHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHHhhcccc
Confidence 999999999999999987
No 3
>1eys_L Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: f.26.1.1
Probab=40.91 E-value=60 Score=30.60 Aligned_cols=59 Identities=15% Similarity=0.111 Sum_probs=47.0
Q ss_pred cceehhhHHHhhHHHHHHHHHHhhhhhhhccccCCchHHHHHHHHHHHHHHHHHHHhHhhc
Q 021662 46 HGVLYDAALVVPTVLFVLYLVVHAKKNLTKLCNGRSYIMISYYALLWLACVLNLAWCSLQG 106 (309)
Q Consensus 46 ~g~~wDv~LlvPn~LFllFL~~~~~~s~~KL~~t~SpI~~tyY~ll~~v~llnl~rc~vsm 106 (309)
+|=+|..+-+--.+-++.+.+-+-.+|+ || ..|-+|-.+|=+-+|+...+.++|=++|-
T Consensus 90 ~GG~w~~~~~~~~~~~~~w~~R~~e~ar-~L-Gmg~hva~AFsaaI~~~~~l~lirPilmG 148 (280)
T 1eys_L 90 EGGLWQIITICAAGAFISWALREVEICR-KL-GIGFHVPFAFSFAIGAYLVLVFVRPLLMG 148 (280)
T ss_dssp GTHHHHHHHHHHHHHHHHHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHHTHHHHHHT
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHH-Hh-CCcchhhHHHHHHHHHHHHHHHhhhcccc
Confidence 5556877777777777777776666553 33 66779999999999999999999999987
No 4
>2wjn_M Reaction center protein M chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 2wjm_M* 2x5u_M* 2x5v_M* 4ac5_M* 3t6e_M* 1prc_M* 1r2c_M* 1vrn_M* 1dxr_M* 2jbl_M* 2prc_M* 3d38_M* 3prc_M* 2i5n_M* 5prc_M* 6prc_M* 7prc_M* 3g7f_M* 3t6d_M*
Probab=29.40 E-value=1.2e+02 Score=29.07 Aligned_cols=59 Identities=12% Similarity=0.075 Sum_probs=45.0
Q ss_pred cceehhhHHHhhHHHHHHHHHHhhhhhhhccccCCchHHHHHHHHHHHHHHHHHHHhHhhc
Q 021662 46 HGVLYDAALVVPTVLFVLYLVVHAKKNLTKLCNGRSYIMISYYALLWLACVLNLAWCSLQG 106 (309)
Q Consensus 46 ~g~~wDv~LlvPn~LFllFL~~~~~~s~~KL~~t~SpI~~tyY~ll~~v~llnl~rc~vsm 106 (309)
+|=+|-.+-+--.+-++.+.+-+-.+|+ | -..|-+|-.+|=+-+|+...+.++|=++|-
T Consensus 110 ~GG~w~~~~f~~~~s~~~w~~R~~e~ar-~-LGmg~hva~AFsaaI~~~~~l~lirPilmG 168 (324)
T 2wjn_M 110 DGGWWLMAGLFMTLSLGSWWIRVYSRAR-A-LGLGTHIAWNFAAAIFFVLCIGCIHPTLVG 168 (324)
T ss_dssp GTHHHHHHHHHHHHHHHHHHHHHHHHHH-H-TTCCSHHHHHHHHHHHHHHHHHTHHHHHHT
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHH-H-hCCcchhHHHHHHHHHHHHHHHHHhhcccc
Confidence 4556777766666666666666655553 3 366779999999999999999999999987
No 5
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=24.06 E-value=99 Score=23.83 Aligned_cols=25 Identities=16% Similarity=0.068 Sum_probs=17.6
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHhHhhc
Q 021662 78 NGRSYIMISYYALLWLACVLNLAWCSLQG 106 (309)
Q Consensus 78 ~t~SpI~~tyY~ll~~v~llnl~rc~vsm 106 (309)
..|||||.. =-+.-++|++|+.++.
T Consensus 45 krrspiF~l----N~~~L~l~iirs~l~~ 69 (80)
T 2k9p_A 45 SRKTPIFII----NQVSLFLIILHSALYF 69 (80)
T ss_dssp CSCCCHHHH----HHHHHHHHHHHHHHHH
T ss_pred cccChhhHH----HHHHHHHHHHHHHHHH
Confidence 578999743 2334478899998876
No 6
>1eys_M Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: f.26.1.1
Probab=23.49 E-value=1.8e+02 Score=27.95 Aligned_cols=60 Identities=18% Similarity=0.189 Sum_probs=45.0
Q ss_pred ccceehhhHHHhhHHHHHHHHHHhhhhhhhccccCCchHHHHHHHHHHHHHHHHHHHhHhhc
Q 021662 45 CHGVLYDAALVVPTVLFVLYLVVHAKKNLTKLCNGRSYIMISYYALLWLACVLNLAWCSLQG 106 (309)
Q Consensus 45 c~g~~wDv~LlvPn~LFllFL~~~~~~s~~KL~~t~SpI~~tyY~ll~~v~llnl~rc~vsm 106 (309)
.+|=+|-.+-+--.+-++.+.+-+-.+|+ || ..|-+|-.+|=+-+|+...+.++|=++|-
T Consensus 109 ~~GG~w~~~~~~~~~s~~~w~~R~~e~ar-~L-Gmg~hia~AFsaaI~~~~~l~lirPilmG 168 (324)
T 1eys_M 109 SEGGWWLIAGLFLTLSILLWWVRTYKRAE-AL-GMSQHLSWAFAAAIFFYLVLGFIRPVMMG 168 (324)
T ss_dssp GGTHHHHHHHHHHHHHHHHHHHHHHHHHH-TT-SCCTHHHHHHHHHHHHHHHHHTHHHHHHT
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHHH-Hh-CCcchhhHHHHHHHHHHHHHHHHhhcccc
Confidence 34446777666666666666666655553 33 56679999999999999999999999987
No 7
>2wjn_L Reaction center protein L chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 2wjm_L* 2x5u_L* 2x5v_L* 4ac5_L* 3t6e_L* 1r2c_L* 1prc_L* 1vrn_L* 2jbl_L* 2prc_L* 3d38_L* 3g7f_L* 3prc_L* 2i5n_L* 3t6d_L* 5prc_L* 6prc_L* 7prc_L* 1dxr_L*
Probab=23.01 E-value=2e+02 Score=26.99 Aligned_cols=60 Identities=18% Similarity=0.291 Sum_probs=47.1
Q ss_pred ccceehhhHHHhhHHHHHHHHHHhhhhhhhccccCCchHHHHHHHHHHHHHHHHHHHhHhhc
Q 021662 45 CHGVLYDAALVVPTVLFVLYLVVHAKKNLTKLCNGRSYIMISYYALLWLACVLNLAWCSLQG 106 (309)
Q Consensus 45 c~g~~wDv~LlvPn~LFllFL~~~~~~s~~KL~~t~SpI~~tyY~ll~~v~llnl~rc~vsm 106 (309)
.+|=+|..+-+--.+-++.+.+-+-.+|+ || ..|-+|-.+|=+-+|....+.++|=++|-
T Consensus 82 ~~GG~w~~~~~~~~~~~~~w~~R~~e~ar-~L-Gmg~hia~AFsaaI~~~~~l~lirPilmG 141 (274)
T 2wjn_L 82 LEGGFWQAITVCALGAFISWMLREVEISR-KL-GIGWHVPLAFCVPIFMFCVLQVFRPLLLG 141 (274)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHH-HT-TCCSHHHHHHHHHHHHHHHHHTHHHHHHT
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-CCCcchhHHHHHHHHHHHHHHHHhhcccc
Confidence 34556777777777777777776666653 33 56679999999999999999999999987
No 8
>1btq_A BAND 3 anion transport protein; NMR {} SCOP: j.35.1.1 PDB: 1btr_A
Probab=22.62 E-value=24 Score=22.20 Aligned_cols=17 Identities=12% Similarity=0.282 Sum_probs=13.8
Q ss_pred echhhHHHHHhhhHHHH
Q 021662 259 YNLTVICYHSLYLPLLY 275 (309)
Q Consensus 259 vd~Tt~~Yfaly~PLlY 275 (309)
+..+.|+||++.+|-|-
T Consensus 3 laa~~FlyFa~l~paIa 19 (26)
T 1btq_A 3 LAAVIFIYFAALSPAIT 19 (26)
T ss_pred HHHHHHHHHHHHcchhc
Confidence 34678999999999873
No 9
>1rzh_L Reaction center protein L chain; bacterial photosynthesis, proton TR pathway, revertant, integral membrane protein, photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A {Rhodobacter sphaeroides} SCOP: f.26.1.1 PDB: 1rvj_L* 1ry5_L* 1rzz_L* 1s00_L* 2j8c_L* 1aig_L* 1ds8_L* 1dv3_L* 1dv6_L* 1e14_L* 1e6d_L* 1jgw_L* 1jgx_L* 1jgy_L* 1jgz_L* 1k6l_L* 1kby_L* 1l9b_L* 1l9j_L* 1m3x_L* ...
Probab=22.46 E-value=1.8e+02 Score=27.33 Aligned_cols=59 Identities=19% Similarity=0.129 Sum_probs=45.9
Q ss_pred cceehhhHHHhhHHHHHHHHHHhhhhhhhccccCCchHHHHHHHHHHHHHHHHHHHhHhhc
Q 021662 46 HGVLYDAALVVPTVLFVLYLVVHAKKNLTKLCNGRSYIMISYYALLWLACVLNLAWCSLQG 106 (309)
Q Consensus 46 ~g~~wDv~LlvPn~LFllFL~~~~~~s~~KL~~t~SpI~~tyY~ll~~v~llnl~rc~vsm 106 (309)
+|=+|..+-+--.+-++.+.+-+-.+|+ || ..|-+|-.+|=+-+|+...+.++|=++|-
T Consensus 82 ~GG~w~~~~~~~~~~~~~w~~R~~e~ar-~L-Gmg~hva~AFsaaI~~~~~l~lirPilmG 140 (281)
T 1rzh_L 82 KGGLWQIITICATGAFVSWALREVEICR-KL-GIGYHIPFAFAFAILAYLTLVLFRPVMMG 140 (281)
T ss_dssp GTHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-TCCSHHHHHHHHHHHHHHHHHTHHHHHHT
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHH-Hh-CCCcchhHHHHHHHHHHHHHHHHhccccc
Confidence 4446777777666777777776666553 33 56669999999999999999999999987
No 10
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=22.14 E-value=72 Score=28.92 Aligned_cols=22 Identities=14% Similarity=0.333 Sum_probs=13.2
Q ss_pred HHHHHHHHHhccccccccCCCCc
Q 021662 203 TAVYGFILFVHFSKWREKLPSRP 225 (309)
Q Consensus 203 ~lVY~~I~~LP~t~~rerLPar~ 225 (309)
.+.|.++. +.+-++|+|-|.+|
T Consensus 352 ~~~~~~~~-~~~~~~r~~~~~~~ 373 (444)
T 3gia_A 352 MVIYLFVI-LSHYILIDEVGGRK 373 (444)
T ss_dssp HHHHHHHH-HHHHHTHHHHCCCH
T ss_pred HHHHHHHH-HHHHHhhhcCCCcc
Confidence 34555443 33567777778776
Done!