Query 021662
Match_columns 309
No_of_seqs 50 out of 52
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 07:26:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021662.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021662hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54i_ f.23.3.1 (I:) Mitochon 57.6 1.3 9.1E-05 32.6 0.5 40 262-306 32-71 (73)
2 d2axta1 f.26.1.1 (A:10-344) Ph 34.8 22 0.0016 32.0 5.2 87 10-106 71-157 (335)
3 d2j8cl1 f.26.1.1 (L:1-281) L ( 34.5 46 0.0033 29.2 7.1 77 10-106 64-140 (281)
4 d1eysl_ f.26.1.1 (L:) L (light 31.9 51 0.0037 28.8 7.0 76 11-106 73-148 (280)
5 d2i5nm1 f.26.1.1 (M:1-323) M ( 31.5 50 0.0037 29.4 7.0 76 11-106 92-167 (323)
6 d2i5nl1 f.26.1.1 (L:1-273) L ( 31.3 51 0.0037 28.8 6.9 170 10-214 64-254 (273)
7 d3cx5c1 f.32.1.1 (C:262-385) M 18.6 76 0.0055 23.9 4.9 62 207-271 36-103 (124)
8 d1eysm_ f.26.1.1 (M:) M (mediu 15.4 1.7E+02 0.012 25.8 7.1 56 49-106 113-168 (318)
9 d2j8cm1 f.26.1.1 (M:1-303) M ( 12.6 2.1E+02 0.015 25.0 6.8 58 47-106 112-169 (303)
10 d2axtt1 f.23.34.1 (T:1-30) Pho 12.1 1.1E+02 0.0082 18.1 3.3 25 263-287 3-27 (30)
No 1
>d1v54i_ f.23.3.1 (I:) Mitochondrial cytochrome c oxidase subunit VIc {Cow (Bos taurus) [TaxId: 9913]}
Probab=57.58 E-value=1.3 Score=32.60 Aligned_cols=40 Identities=23% Similarity=0.408 Sum_probs=24.8
Q ss_pred hhHHHHHhhhHHHHHHHHHhhhcccccccchhhhhhhhccccCCC
Q 021662 262 TVICYHSLYLPLLYATFLADFFQEENFLLDNAYYSEMKDAGFFDA 306 (309)
Q Consensus 262 Tt~~Yfaly~PLlY~TFLadFF~~e~~~~~~~yYSemkDag~fd~ 306 (309)
+....|...=|== .=-+||+++=|.+-| |.+|+++|.|+.
T Consensus 32 a~~~Kf~v~eprK--kaYadFYknYDa~Kd---Fe~Mr~aGvFqS 71 (73)
T d1v54i_ 32 ATFYKFAVAEKRK--KAYADFYRNYDSMKD---FEEMRKAGIFQS 71 (73)
T ss_dssp HHHHHHHTHHHHH--HHHHHHHHTCCHHHH---HHHHHHTTCCSS
T ss_pred HHHHHHHhccHhH--HHHHHHHHccchhhh---HHHHHHcccccc
Confidence 3444455555531 223567777674433 889999999975
No 2
>d2axta1 f.26.1.1 (A:10-344) Photosystem Q(B) protein 1, PsbA1 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=34.84 E-value=22 Score=32.03 Aligned_cols=87 Identities=21% Similarity=0.134 Sum_probs=62.6
Q ss_pred eeeeeccceeeecCCCcccCCCCcccccCccccccccceehhhHHHhhHHHHHHHHHHhhhhhhhccccCCchHHHHHHH
Q 021662 10 INVTTASESFSVSLPPIAELPFPVKSIGGNESVRQCHGVLYDAALVVPTVLFVLYLVVHAKKNLTKLCNGRSYIMISYYA 89 (309)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~c~g~~wDv~LlvPn~LFllFL~~~~~~s~~KL~~t~SpI~~tyY~ 89 (309)
..|.+.+++...++||+.|-. .-.+|+++ |=+|-.+.+--.+-+..+++-+-..| |--..|-+|-.+|=+
T Consensus 71 ~Av~PPs~~~GL~f~PLwe~~------s~~~wl~~--GG~w~ii~~~~l~~v~~w~~R~~e~a--~~LGMr~~ia~AFsa 140 (335)
T d2axta1 71 GAVVPSSNAIGLHFYPIWEAA------SLDEWLYN--GGPYQLIIFHFLLGASCYMGRQWELS--YRLGMRPWICVAYSA 140 (335)
T ss_dssp CCBCCCCTTTTTSCCCGGGSS------SHHHHHHT--THHHHHHHHHHHHHHHHHHHHHHHHH--HHTTCCSCHHHHTHH
T ss_pred EEecCChhhccccccccccch------hhHHHHHc--CCcHHHHHHHHHHHHHHHHHHHHHHH--HHhCCchhhhHHHHH
Confidence 346677788888888887643 12358876 55677766655556666655554444 334556689999999
Q ss_pred HHHHHHHHHHHHhHhhc
Q 021662 90 LLWLACVLNLAWCSLQG 106 (309)
Q Consensus 90 ll~~v~llnl~rc~vsm 106 (309)
-+|+...+.++|=+.|-
T Consensus 141 ~I~~~~~v~li~Pi~~G 157 (335)
T d2axta1 141 PLASAFAVFLIYPIGQG 157 (335)
T ss_dssp HHHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHhhheecccc
Confidence 99999999999999987
No 3
>d2j8cl1 f.26.1.1 (L:1-281) L (light) subunit {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=34.46 E-value=46 Score=29.19 Aligned_cols=77 Identities=17% Similarity=0.176 Sum_probs=52.2
Q ss_pred eeeeeccceeeecCCCcccCCCCcccccCccccccccceehhhHHHhhHHHHHHHHHHhhhhhhhccccCCchHHHHHHH
Q 021662 10 INVTTASESFSVSLPPIAELPFPVKSIGGNESVRQCHGVLYDAALVVPTVLFVLYLVVHAKKNLTKLCNGRSYIMISYYA 89 (309)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~c~g~~wDv~LlvPn~LFllFL~~~~~~s~~KL~~t~SpI~~tyY~ 89 (309)
+++...+.++..++||++| |-+|-.+-+--.+-++.+.+-+-++ +|--..+-+|-.+|=.
T Consensus 64 lsl~PP~~~yGL~~~PL~e------------------GG~W~i~~~~~~~s~~~W~~R~~e~--ar~LGmg~hv~~AF~~ 123 (281)
T d2j8cl1 64 ISVYPPALEYGLGGAPLAK------------------GGLWQIITICATGAFVSWALREVEI--CRKLGIGYHIPFAFAF 123 (281)
T ss_dssp CEECCCCGGGTTSCCCGGG------------------THHHHHHHHHHHHHHHHHHHHHHHH--HHHHTCCSHHHHHHHH
T ss_pred eeecCCChhhCCCCCCccc------------------ChHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCcchhhHHHHH
Confidence 4556666677777777776 3355555444444444444444333 3334556699999999
Q ss_pred HHHHHHHHHHHHhHhhc
Q 021662 90 LLWLACVLNLAWCSLQG 106 (309)
Q Consensus 90 ll~~v~llnl~rc~vsm 106 (309)
-+|+...++++|=+++-
T Consensus 124 aI~~~~~l~~irPilmG 140 (281)
T d2j8cl1 124 AILAYLTLVLFRPVMMG 140 (281)
T ss_dssp HHHHHHHHHTHHHHHHT
T ss_pred HHHHHHHhheeeecccc
Confidence 99999999999999977
No 4
>d1eysl_ f.26.1.1 (L:) L (light) subunit {Thermochromatium tepidum [TaxId: 1050]}
Probab=31.95 E-value=51 Score=28.85 Aligned_cols=76 Identities=13% Similarity=0.189 Sum_probs=48.5
Q ss_pred eeeeccceeeecCCCcccCCCCcccccCccccccccceehhhHHHhhHHHHHHHHHHhhhhhhhccccCCchHHHHHHHH
Q 021662 11 NVTTASESFSVSLPPIAELPFPVKSIGGNESVRQCHGVLYDAALVVPTVLFVLYLVVHAKKNLTKLCNGRSYIMISYYAL 90 (309)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~c~g~~wDv~LlvPn~LFllFL~~~~~~s~~KL~~t~SpI~~tyY~l 90 (309)
.+...++++..++||+.| |=+|-.+-+--.+-++.+.+-+-++| |--..+-+|-.+|=+-
T Consensus 73 al~PP~~~yGL~~~PL~e------------------GG~w~i~~ff~~~s~~~Ww~R~~e~a--r~LGmg~hva~AFsaa 132 (280)
T d1eysl_ 73 SIAPPDLSYGLRMAPLTE------------------GGLWQIITICAAGAFISWALREVEIC--RKLGIGFHVPFAFSFA 132 (280)
T ss_dssp CBCCCCGGGTTSCCCGGG------------------THHHHHHHHHHHHHHHHHHHHHHHHH--HTTTCCCHHHHHHHHH
T ss_pred eecCCChHhhcccCchhc------------------CChHHHHHHHHHHHHHHHHHHHHHHH--HHhCCcchhhHHHHHH
Confidence 344455555555666555 33455444444444444444333333 3345566999999999
Q ss_pred HHHHHHHHHHHhHhhc
Q 021662 91 LWLACVLNLAWCSLQG 106 (309)
Q Consensus 91 l~~v~llnl~rc~vsm 106 (309)
+|+..++.++|=+++-
T Consensus 133 I~~~l~L~~irPilmG 148 (280)
T d1eysl_ 133 IGAYLVLVFVRPLLMG 148 (280)
T ss_dssp HHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHhheecccc
Confidence 9999999999999987
No 5
>d2i5nm1 f.26.1.1 (M:1-323) M (medium) subunit {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=31.47 E-value=50 Score=29.43 Aligned_cols=76 Identities=13% Similarity=0.217 Sum_probs=52.4
Q ss_pred eeeeccceeeecCCCcccCCCCcccccCccccccccceehhhHHHhhHHHHHHHHHHhhhhhhhccccCCchHHHHHHHH
Q 021662 11 NVTTASESFSVSLPPIAELPFPVKSIGGNESVRQCHGVLYDAALVVPTVLFVLYLVVHAKKNLTKLCNGRSYIMISYYAL 90 (309)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~c~g~~wDv~LlvPn~LFllFL~~~~~~s~~KL~~t~SpI~~tyY~l 90 (309)
++...+.++..++||+.| |-+|-++-+--..-|+.+.+-+-++|+ || ..+-+|-.+|=.-
T Consensus 92 sl~PP~~~yGL~~~PL~e------------------GG~W~i~~f~~~~s~~~W~~R~~e~ar-~L-GmG~Hva~AFsaA 151 (323)
T d2i5nm1 92 GLYPPKAQYGMGIPPLHD------------------GGWWLMAGLFMTLSLGSWWIRVYSRAR-AL-GLGTHIAWNFAAA 151 (323)
T ss_dssp CBCCCSSCCTTSCCCGGG------------------THHHHHHHHHHHHHHHHHHHHHHHHHH-HT-TCCSHHHHHHHHH
T ss_pred eecCCCHHHccCCCcccc------------------ccHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-CCchhHHHHHHHH
Confidence 344445566666666666 445666666555556655555544443 44 4455999999999
Q ss_pred HHHHHHHHHHHhHhhc
Q 021662 91 LWLACVLNLAWCSLQG 106 (309)
Q Consensus 91 l~~v~llnl~rc~vsm 106 (309)
+|+...+.++|=+++-
T Consensus 152 I~~y~~L~~iRPilmG 167 (323)
T d2i5nm1 152 IFFVLCIGCIHPTLVG 167 (323)
T ss_dssp HHHHHHHHTHHHHHHT
T ss_pred HHHHHHHhhheecccc
Confidence 9999999999999976
No 6
>d2i5nl1 f.26.1.1 (L:1-273) L (light) subunit {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=31.33 E-value=51 Score=28.79 Aligned_cols=170 Identities=16% Similarity=0.225 Sum_probs=94.1
Q ss_pred eeeeeccceeeecCCCcccCCCCcccccCccccccccceehhhHHHhhHHHHHHHHHHhhhhhhhccccCCchHHHHHHH
Q 021662 10 INVTTASESFSVSLPPIAELPFPVKSIGGNESVRQCHGVLYDAALVVPTVLFVLYLVVHAKKNLTKLCNGRSYIMISYYA 89 (309)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~c~g~~wDv~LlvPn~LFllFL~~~~~~s~~KL~~t~SpI~~tyY~ 89 (309)
+++...++++..++||++| |=+|-++-+--.+-|+.+.+-+-++| +|| ..+-+|-.+|=.
T Consensus 64 lsl~PP~~~yGL~~~PL~e------------------GG~w~i~~~~~~~s~~~W~~R~~e~a-r~L-Gmg~hv~~AF~~ 123 (273)
T d2i5nl1 64 ISINPPDLKYGLGAAPLLE------------------GGFWQAITVCALGAFISWMLREVEIS-RKL-GIGWHVPLAFCV 123 (273)
T ss_dssp CCBCCCCGGGTTSCCCGGG------------------THHHHHHHHHHHHHHHHHHHHHHHHH-HHH-TCCSHHHHHHHH
T ss_pred EEccCCchhhCcCCCCccc------------------CcHHHHHHHHHHHHHHHHHHHHHHHH-HHh-CCcchhhHHHHH
Confidence 3444555666666666665 33455555444444555544444443 344 445599999999
Q ss_pred HHHHHHHHHHHHhHhhc-cc-ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hc-ccchhHHHHHHHHHHHHHHHH-
Q 021662 90 LLWLACVLNLAWCSLQG-WQ-CSAGKEVAWNLLSLFTVAAVLYLEISLMAFLLQ-ES-YASGLETLARTFIISGIIVGV- 164 (309)
Q Consensus 90 ll~~v~llnl~rc~vsm-~~-~t~~~~~~wniLwl~trf~lL~lEvSvvvFgl~-g~-~~~s~~sl~Rtl~iS~lia~~- 164 (309)
-+|+...+.++|=+++- |. .-|-+ +.-.+=|. -.|+++ || |-|-.-.+.-+++.++.+...
T Consensus 124 aI~~~~~l~~irPilmGsW~~a~PyG-If~HLDW~-------------~~fs~~ygN~~YNPfHmlsI~fl~gsaLl~Am 189 (273)
T d2i5nl1 124 PIFMFCVLQVFRPLLLGSWGHAFPYG-ILSHLDWV-------------NNFGYQYLNWHYNPGHMSSVSFLFVNAMALGL 189 (273)
T ss_dssp HHHHHHHHHTHHHHHHTCGGGSCCBS-TTHHHHHH-------------HHHHHTTSCGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHheeeecccccccccCccc-hhHHHHHH-------------HHHHHHhcceeeCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999977 32 11321 11222232 246665 34 445455566666665554432
Q ss_pred -HHHHHHHHhhccccceeecC------------C---CCCCccchhHHHHHHHHHHHHHHHHHhcc
Q 021662 165 -DMLLKVIYVFGFGFPLFIDV------------D---STHRMKWGFWIIHELLLTAVYGFILFVHF 214 (309)
Q Consensus 165 -d~l~kaiy~f~~gvplf~~~------------~---~~~hgg~~FW~~ss~~f~lVY~~I~~LP~ 214 (309)
-.++-++-..+.+-.--..+ + .+-| .|..|++-...++..-+.++-=|.
T Consensus 190 HGatILa~~~~g~~~e~~~~e~~~~FwR~~mG~s~~~~gIH-R~~~~~A~~~~~~s~igIllsG~~ 254 (273)
T d2i5nl1 190 HGGLILSVANPGDGDKVKTAEHENQYFRDVVGYSIGALSIH-RLGLFLASNIFLTGAFGTIASGPF 254 (273)
T ss_dssp HHHHHHHHHCCSTTCCCCCHHHHHHHHHHHHSBCCCTTHHH-HHHHHHHHHHHHHHHHHHHHBTTT
T ss_pred hhhheeeeecCCCCccccchHHHHHHHHHHhccccchHHHH-HHHHHHHHHHHHHhheEEEEECCc
Confidence 22333333444432110000 1 2223 788899888888777666665553
No 7
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.64 E-value=76 Score=23.95 Aligned_cols=62 Identities=15% Similarity=0.279 Sum_probs=32.7
Q ss_pred HHHHHhcccccccc----CCCCchhHHHHHHHHHHHHHHHHHHHhhhc-CCcceeEEe-chhhHHHHHhhh
Q 021662 207 GFILFVHFSKWREK----LPSRPAFYHYVVVMFVVSAVAFLVVSLAGT-GAAFGIWLY-NLTVICYHSLYL 271 (309)
Q Consensus 207 ~~I~~LP~t~~rer----LPar~SFY~Yv~iL~lLN~~q~~Gs~Ll~~-~~~~GlClv-d~Tt~~Yfaly~ 271 (309)
..|++|-.-+|-+| -+..+-.++....+++.|.+-. +-+|. .++.-+..+ -+.|..||+.|.
T Consensus 36 ~si~il~~lP~l~~s~~~s~~~rp~~k~~fw~fv~~fi~L---twlG~~p~e~p~~~~gqi~s~~YF~~Fl 103 (124)
T d3cx5c1 36 AAILVLLVLPFTDRSVVRGNTFKVLSKFFFFIFVFNFVLL---GQIGACHVEVPYVLMGQIATFIYFAYFL 103 (124)
T ss_dssp HHHHGGGGHHHHCCCSSSSSTTCHHHHHHHHHHHHHHHHH---HHHHTSCSCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhcchhhHHHHHHHHHHHHHHHH---HHhcCCCCCchHHHHHHHHHHHHHHHHH
Confidence 34444444455444 4455555666666777776522 12222 223333333 367899999885
No 8
>d1eysm_ f.26.1.1 (M:) M (medium) subunit {Thermochromatium tepidum [TaxId: 1050]}
Probab=15.43 E-value=1.7e+02 Score=25.80 Aligned_cols=56 Identities=18% Similarity=0.195 Sum_probs=40.2
Q ss_pred ehhhHHHhhHHHHHHHHHHhhhhhhhccccCCchHHHHHHHHHHHHHHHHHHHhHhhc
Q 021662 49 LYDAALVVPTVLFVLYLVVHAKKNLTKLCNGRSYIMISYYALLWLACVLNLAWCSLQG 106 (309)
Q Consensus 49 ~wDv~LlvPn~LFllFL~~~~~~s~~KL~~t~SpI~~tyY~ll~~v~llnl~rc~vsm 106 (309)
+|-++-+--..-|+.+.+-+-++| +|| ..+-+|-.+|=.-+|+...+.++|=+++-
T Consensus 113 ~W~i~~~~~~~s~~~W~~R~~e~a-r~L-Gmg~hv~~AF~~aI~~y~~l~~irPilmG 168 (318)
T d1eysm_ 113 WWLIAGLFLTLSILLWWVRTYKRA-EAL-GMSQHLSWAFAAAIFFYLVLGFIRPVMMG 168 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HTT-SCCTHHHHHHHHHHHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHh-CCchhHHHHHHHHHHHHHHHhhheecccc
Confidence 566655555555555555444444 344 44559999999999999999999999977
No 9
>d2j8cm1 f.26.1.1 (M:1-303) M (medium) subunit {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=12.59 E-value=2.1e+02 Score=25.02 Aligned_cols=58 Identities=19% Similarity=0.137 Sum_probs=43.2
Q ss_pred ceehhhHHHhhHHHHHHHHHHhhhhhhhccccCCchHHHHHHHHHHHHHHHHHHHhHhhc
Q 021662 47 GVLYDAALVVPTVLFVLYLVVHAKKNLTKLCNGRSYIMISYYALLWLACVLNLAWCSLQG 106 (309)
Q Consensus 47 g~~wDv~LlvPn~LFllFL~~~~~~s~~KL~~t~SpI~~tyY~ll~~v~llnl~rc~vsm 106 (309)
|=+|-.+-+--.+-++.+.+-+-++|+ || ..+-+|-.+|=.-+|+...+.++|=+++-
T Consensus 112 GG~W~i~~f~~~~sv~~W~~R~~e~ar-~L-Gmg~hva~AF~~aI~~~~~l~~irPilmG 169 (303)
T d2j8cm1 112 GGLWLIASFFMFVAVWSWWGRTYLRAQ-AL-GMGKHTAWAFLSAIWLWMVLGFIRPILMG 169 (303)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH-HT-TCCSHHHHHHHHHHHHHHHHHTHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-CCchHHHHHHHHHHHHHHHHhheeecccc
Confidence 446777666666666666665555443 33 45559999999999999999999999977
No 10
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.10 E-value=1.1e+02 Score=18.14 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=17.4
Q ss_pred hHHHHHhhhHHHHHHHHHhhhcccc
Q 021662 263 VICYHSLYLPLLYATFLADFFQEEN 287 (309)
Q Consensus 263 t~~Yfaly~PLlY~TFLadFF~~e~ 287 (309)
+..|--.|+-++-.-|.+-||+|++
T Consensus 3 ~i~yv~ifac~i~lfffaiffrepp 27 (30)
T d2axtt1 3 TITYVFIFACIIALFFFAIFFREPP 27 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred eeehHHHHHHHHHHHHHHHHhcCCC
Confidence 3445555666666678889999876
Done!