Query 021664
Match_columns 309
No_of_seqs 62 out of 64
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 04:43:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021664.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021664hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07889 DUF1664: Protein of u 100.0 6.3E-59 1.4E-63 393.2 13.9 120 92-211 6-126 (126)
2 PF10805 DUF2730: Protein of u 97.0 0.0016 3.6E-08 53.7 5.6 88 94-207 9-98 (106)
3 PRK10884 SH3 domain-containing 96.0 0.23 5.1E-06 45.7 13.9 99 104-210 66-168 (206)
4 PF04375 HemX: HemX; InterPro 95.9 0.081 1.8E-06 52.0 11.1 10 101-110 41-50 (372)
5 KOG2629 Peroxisomal membrane a 95.3 0.069 1.5E-06 52.0 8.0 71 93-164 85-165 (300)
6 PF01519 DUF16: Protein of unk 94.9 0.19 4E-06 42.3 8.4 82 119-209 21-102 (102)
7 PRK15048 methyl-accepting chem 94.8 1.6 3.4E-05 44.0 16.4 31 235-265 518-548 (553)
8 PF14712 Snapin_Pallidin: Snap 93.9 1 2.3E-05 35.3 10.2 72 136-208 15-91 (92)
9 PF00038 Filament: Intermediat 93.7 2.7 5.8E-05 39.4 14.3 92 125-216 166-258 (312)
10 PHA02562 46 endonuclease subun 93.4 0.95 2.1E-05 45.4 11.5 87 132-218 192-278 (562)
11 PRK10920 putative uroporphyrin 93.3 1.4 3E-05 44.4 12.3 22 89-110 34-57 (390)
12 PRK11637 AmiB activator; Provi 93.2 1.2 2.7E-05 44.1 11.8 81 125-205 44-127 (428)
13 PF11932 DUF3450: Protein of u 93.2 2.2 4.9E-05 39.4 12.8 78 135-212 24-101 (251)
14 PRK13729 conjugal transfer pil 93.1 1.6 3.4E-05 45.3 12.6 51 161-211 70-120 (475)
15 PF04582 Reo_sigmaC: Reovirus 92.8 0.14 3E-06 50.5 4.4 88 124-211 66-156 (326)
16 PF07889 DUF1664: Protein of u 92.1 2.6 5.6E-05 36.5 10.9 38 140-177 30-67 (126)
17 PF10158 LOH1CR12: Tumour supp 92.1 3.3 7.1E-05 35.9 11.5 50 124-173 27-76 (131)
18 PRK11637 AmiB activator; Provi 92.0 1.4 3.1E-05 43.6 10.4 78 131-208 43-123 (428)
19 PF12718 Tropomyosin_1: Tropom 91.0 3.9 8.5E-05 35.6 11.0 63 150-212 77-139 (143)
20 PF07798 DUF1640: Protein of u 91.0 10 0.00022 33.6 13.8 97 120-219 43-144 (177)
21 smart00502 BBC B-Box C-termina 90.7 3.5 7.7E-05 32.5 9.6 31 212-242 85-116 (127)
22 PF06419 COG6: Conserved oligo 90.5 2.4 5.1E-05 44.6 10.8 86 115-203 6-95 (618)
23 PF00015 MCPsignal: Methyl-acc 90.3 10 0.00022 32.6 12.9 15 61-75 45-59 (213)
24 PF13747 DUF4164: Domain of un 90.2 3.8 8.2E-05 33.2 9.5 81 141-225 3-83 (89)
25 KOG0250 DNA repair protein RAD 89.5 4.7 0.0001 45.4 12.5 98 134-231 290-387 (1074)
26 PF00015 MCPsignal: Methyl-acc 89.3 13 0.00029 31.9 13.9 27 178-204 132-158 (213)
27 PF11932 DUF3450: Protein of u 89.2 6.6 0.00014 36.4 11.6 78 130-207 33-110 (251)
28 PF06103 DUF948: Bacterial pro 89.0 3.9 8.4E-05 32.1 8.6 20 188-207 68-87 (90)
29 PRK06975 bifunctional uroporph 88.1 3.3 7.2E-05 43.9 9.9 39 141-179 373-411 (656)
30 PF10046 BLOC1_2: Biogenesis o 88.1 10 0.00022 30.9 10.7 68 143-210 25-95 (99)
31 PF10146 zf-C4H2: Zinc finger- 88.1 24 0.00052 33.3 15.0 67 160-226 32-98 (230)
32 PF04156 IncA: IncA protein; 87.5 12 0.00026 32.8 11.5 8 219-226 175-182 (191)
33 PF01442 Apolipoprotein: Apoli 87.5 11 0.00023 31.5 10.8 19 126-144 3-21 (202)
34 PF05478 Prominin: Prominin; 87.5 6 0.00013 42.8 11.5 33 130-162 189-222 (806)
35 PF05816 TelA: Toxic anion res 87.4 8.3 0.00018 37.5 11.4 100 122-221 85-202 (333)
36 PF04513 Baculo_PEP_C: Baculov 86.9 11 0.00024 33.3 10.9 83 125-207 35-118 (140)
37 PRK04778 septation ring format 86.7 14 0.00029 38.5 13.2 121 103-223 237-411 (569)
38 PHA02562 46 endonuclease subun 86.5 11 0.00024 37.8 12.1 75 131-206 309-383 (562)
39 COG3883 Uncharacterized protei 86.3 5.1 0.00011 38.8 9.2 67 138-204 37-103 (265)
40 TIGR02132 phaR_Bmeg polyhydrox 85.9 3.4 7.4E-05 38.2 7.4 57 151-207 77-133 (189)
41 PF10018 Med4: Vitamin-D-recep 85.7 12 0.00026 33.5 10.8 87 137-234 11-99 (188)
42 PF05531 NPV_P10: Nucleopolyhe 85.6 3.4 7.5E-05 33.1 6.4 53 128-181 11-63 (75)
43 PRK10884 SH3 domain-containing 85.2 11 0.00023 35.0 10.4 70 125-194 97-166 (206)
44 TIGR00293 prefoldin, archaeal 84.8 2.2 4.7E-05 35.3 5.2 55 99-184 70-124 (126)
45 PF10241 KxDL: Uncharacterized 84.7 9.5 0.00021 30.6 8.7 63 144-206 16-82 (88)
46 PRK15048 methyl-accepting chem 84.5 27 0.00058 35.3 13.8 59 139-197 270-328 (553)
47 PF10498 IFT57: Intra-flagella 84.5 12 0.00026 37.4 11.0 76 122-197 228-317 (359)
48 COG4942 Membrane-bound metallo 84.3 9.9 0.00022 39.0 10.6 83 135-222 38-120 (420)
49 PF04100 Vps53_N: Vps53-like, 84.0 4.5 9.7E-05 40.3 7.9 43 188-230 57-99 (383)
50 smart00283 MA Methyl-accepting 83.9 28 0.00061 30.3 13.9 47 161-207 40-86 (262)
51 PF00261 Tropomyosin: Tropomyo 83.7 17 0.00038 33.5 11.2 69 152-220 91-159 (237)
52 PRK09039 hypothetical protein; 83.7 14 0.00031 36.3 11.1 86 137-222 100-193 (343)
53 PF10805 DUF2730: Protein of u 83.7 7.5 0.00016 32.2 7.9 65 152-223 34-100 (106)
54 PRK04778 septation ring format 83.5 20 0.00044 37.2 12.7 17 58-74 251-267 (569)
55 PRK13182 racA polar chromosome 82.7 5.9 0.00013 35.8 7.5 63 145-209 84-146 (175)
56 PF04380 BMFP: Membrane fusoge 82.2 9.9 0.00021 30.0 7.7 78 119-209 1-78 (79)
57 smart00806 AIP3 Actin interact 82.1 23 0.00051 36.5 12.2 94 124-217 176-301 (426)
58 PF06103 DUF948: Bacterial pro 82.1 15 0.00033 28.8 8.8 27 119-145 17-43 (90)
59 PRK04406 hypothetical protein; 81.9 6.8 0.00015 30.9 6.7 48 146-193 4-51 (75)
60 PF09730 BicD: Microtubule-ass 81.8 84 0.0018 34.5 16.8 102 127-236 372-473 (717)
61 PF05739 SNARE: SNARE domain; 81.7 11 0.00025 27.1 7.5 52 153-204 4-55 (63)
62 PF09177 Syntaxin-6_N: Syntaxi 81.7 6.5 0.00014 31.6 6.7 28 123-150 41-68 (97)
63 PRK11166 chemotaxis regulator 81.6 21 0.00045 33.6 10.8 114 124-237 26-168 (214)
64 PF10186 Atg14: UV radiation r 81.5 28 0.0006 31.8 11.5 47 145-191 62-108 (302)
65 PF08614 ATG16: Autophagy prot 81.5 6.2 0.00013 35.3 7.2 96 114-209 71-172 (194)
66 PF10168 Nup88: Nuclear pore c 81.1 24 0.00051 38.3 12.5 76 126-205 541-617 (717)
67 PF04102 SlyX: SlyX; InterPro 80.8 7 0.00015 30.0 6.3 52 151-209 2-53 (69)
68 smart00283 MA Methyl-accepting 80.4 39 0.00084 29.5 14.0 73 125-197 137-209 (262)
69 PF05791 Bacillus_HBL: Bacillu 80.4 20 0.00044 32.1 10.0 88 122-209 78-170 (184)
70 PF12718 Tropomyosin_1: Tropom 80.0 40 0.00086 29.4 12.6 90 128-221 17-106 (143)
71 TIGR01837 PHA_granule_1 poly(h 79.8 16 0.00035 30.8 8.7 64 146-209 52-117 (118)
72 PF05597 Phasin: Poly(hydroxya 79.8 14 0.00031 32.1 8.6 25 187-211 108-132 (132)
73 cd00890 Prefoldin Prefoldin is 79.8 4.7 0.0001 32.8 5.4 38 148-185 89-126 (129)
74 KOG1161 Protein involved in va 79.6 5.2 0.00011 39.5 6.5 71 125-196 45-115 (310)
75 COG4942 Membrane-bound metallo 79.5 26 0.00057 36.0 11.6 91 122-212 158-255 (420)
76 cd00584 Prefoldin_alpha Prefol 79.3 4.9 0.00011 33.3 5.4 42 144-185 85-126 (129)
77 PF07888 CALCOCO1: Calcium bin 79.3 22 0.00048 37.7 11.2 77 116-192 129-210 (546)
78 PF08317 Spc7: Spc7 kinetochor 79.2 28 0.0006 33.7 11.2 47 117-163 152-201 (325)
79 PF12325 TMF_TATA_bd: TATA ele 79.2 19 0.00041 30.9 9.0 64 121-185 44-107 (120)
80 PRK14011 prefoldin subunit alp 78.7 4.7 0.0001 35.4 5.3 40 143-182 85-124 (144)
81 PF04582 Reo_sigmaC: Reovirus 78.6 1.2 2.6E-05 44.1 1.8 56 175-232 99-156 (326)
82 PF09602 PhaP_Bmeg: Polyhydrox 78.3 29 0.00063 31.7 10.3 89 110-208 14-105 (165)
83 PRK04863 mukB cell division pr 78.0 39 0.00085 39.7 13.7 83 128-210 314-405 (1486)
84 KOG0972 Huntingtin interacting 77.9 22 0.00048 35.6 10.2 100 111-210 223-327 (384)
85 PF06008 Laminin_I: Laminin Do 77.9 30 0.00065 32.2 10.7 81 126-210 22-102 (264)
86 COG1196 Smc Chromosome segrega 77.8 49 0.0011 37.4 14.1 27 183-209 872-898 (1163)
87 COG1196 Smc Chromosome segrega 77.7 47 0.001 37.6 13.9 52 168-219 864-915 (1163)
88 PF10226 DUF2216: Uncharacteri 77.6 63 0.0014 30.3 14.0 38 190-227 103-143 (195)
89 PRK00846 hypothetical protein; 77.4 16 0.00035 29.3 7.6 55 148-209 8-62 (77)
90 PF02996 Prefoldin: Prefoldin 77.4 5.8 0.00013 32.1 5.2 41 144-184 75-115 (120)
91 PRK09793 methyl-accepting prot 77.3 66 0.0014 32.7 13.8 33 150-182 279-311 (533)
92 PF05531 NPV_P10: Nucleopolyhe 77.2 11 0.00025 30.2 6.6 22 186-207 40-61 (75)
93 PRK09793 methyl-accepting prot 77.1 67 0.0015 32.6 13.7 6 259-264 520-525 (533)
94 PF12732 YtxH: YtxH-like prote 76.9 10 0.00022 29.0 6.2 26 121-146 26-51 (74)
95 PF14197 Cep57_CLD_2: Centroso 76.8 25 0.00055 27.4 8.4 66 143-208 2-67 (69)
96 COG1579 Zn-ribbon protein, pos 76.7 12 0.00027 35.6 7.9 56 154-209 11-66 (239)
97 PF10073 DUF2312: Uncharacteri 76.6 9.9 0.00021 30.5 6.1 44 149-199 7-50 (74)
98 PF10498 IFT57: Intra-flagella 76.6 15 0.00031 36.8 8.7 27 115-141 232-258 (359)
99 COG3750 Uncharacterized protei 76.4 16 0.00035 30.0 7.3 44 149-199 17-60 (85)
100 PF07295 DUF1451: Protein of u 76.1 11 0.00025 33.2 7.0 55 138-192 3-58 (146)
101 PF12128 DUF3584: Protein of u 74.7 41 0.00089 38.2 12.5 94 130-226 258-352 (1201)
102 TIGR00833 actII Transport prot 74.4 35 0.00075 37.5 11.6 49 183-231 602-650 (910)
103 PF08317 Spc7: Spc7 kinetochor 74.3 72 0.0016 30.9 12.6 30 137-166 154-183 (325)
104 PF04740 LXG: LXG domain of WX 74.2 61 0.0013 28.5 11.7 29 183-211 140-168 (204)
105 PF03915 AIP3: Actin interacti 73.8 27 0.00059 35.8 9.9 86 141-226 201-306 (424)
106 TIGR00996 Mtu_fam_mce virulenc 73.8 64 0.0014 30.0 11.7 69 137-205 176-244 (291)
107 PF02403 Seryl_tRNA_N: Seryl-t 73.7 16 0.00035 29.3 6.9 61 145-209 35-95 (108)
108 PRK15041 methyl-accepting chem 73.6 87 0.0019 32.1 13.6 12 126-137 252-263 (554)
109 PRK03947 prefoldin subunit alp 73.5 8.5 0.00019 32.4 5.4 38 145-182 93-130 (140)
110 PF04513 Baculo_PEP_C: Baculov 73.2 62 0.0014 28.7 10.8 80 126-208 18-105 (140)
111 PF06120 Phage_HK97_TLTM: Tail 72.9 55 0.0012 32.3 11.4 48 133-180 53-101 (301)
112 PF04129 Vps52: Vps52 / Sac2 f 72.5 43 0.00092 34.6 11.1 62 152-213 13-74 (508)
113 PF05008 V-SNARE: Vesicle tran 71.9 23 0.0005 26.9 7.0 50 127-179 2-51 (79)
114 PRK02119 hypothetical protein; 71.4 18 0.00039 28.4 6.4 38 150-187 6-43 (73)
115 TIGR01000 bacteriocin_acc bact 71.2 38 0.00083 33.9 10.2 35 136-170 162-196 (457)
116 KOG0161 Myosin class II heavy 70.9 34 0.00075 41.2 11.1 81 128-208 1361-1441(1930)
117 PF06160 EzrA: Septation ring 70.7 21 0.00046 37.2 8.5 61 138-198 371-431 (560)
118 KOG4674 Uncharacterized conser 70.4 27 0.00059 41.7 10.1 23 135-157 805-827 (1822)
119 PRK10698 phage shock protein P 70.3 46 0.00099 30.9 9.8 80 130-214 97-185 (222)
120 PRK02224 chromosome segregatio 70.3 1.1E+02 0.0024 33.0 13.9 18 147-164 181-198 (880)
121 PF06160 EzrA: Septation ring 70.2 57 0.0012 34.1 11.5 122 102-223 232-407 (560)
122 PRK02793 phi X174 lysis protei 70.1 17 0.00038 28.3 6.0 52 150-208 5-56 (72)
123 PF03908 Sec20: Sec20; InterP 69.6 51 0.0011 26.2 8.8 60 138-201 4-63 (92)
124 PF15397 DUF4618: Domain of un 69.6 75 0.0016 30.8 11.3 47 134-180 62-108 (258)
125 TIGR01843 type_I_hlyD type I s 69.5 1.1E+02 0.0023 29.3 13.0 15 61-75 86-100 (423)
126 PF01442 Apolipoprotein: Apoli 69.3 65 0.0014 26.8 13.6 12 61-72 32-43 (202)
127 PRK13694 hypothetical protein; 69.2 26 0.00056 28.8 7.0 49 147-199 10-58 (83)
128 PRK10803 tol-pal system protei 69.0 20 0.00042 33.9 7.3 38 169-206 63-100 (263)
129 TIGR00606 rad50 rad50. This fa 68.9 87 0.0019 35.9 13.4 79 119-197 879-957 (1311)
130 TIGR03185 DNA_S_dndD DNA sulfu 68.8 73 0.0016 33.6 12.1 35 173-207 434-468 (650)
131 smart00787 Spc7 Spc7 kinetocho 68.7 1E+02 0.0023 30.2 12.4 86 122-207 152-244 (312)
132 KOG0250 DNA repair protein RAD 68.7 49 0.0011 37.8 11.2 63 148-210 360-423 (1074)
133 TIGR03513 GldL_gliding gliding 68.6 75 0.0016 29.8 10.8 89 117-207 103-191 (202)
134 PF15188 CCDC-167: Coiled-coil 68.4 16 0.00035 29.9 5.7 59 132-194 2-63 (85)
135 PRK00295 hypothetical protein; 68.4 23 0.00051 27.3 6.4 41 151-191 3-43 (68)
136 PF15358 TSKS: Testis-specific 68.1 44 0.00095 34.9 9.9 96 131-226 114-212 (558)
137 PF06148 COG2: COG (conserved 67.9 6.6 0.00014 33.0 3.5 48 125-172 66-113 (133)
138 cd00632 Prefoldin_beta Prefold 67.8 15 0.00031 29.9 5.4 15 61-75 18-32 (105)
139 TIGR03495 phage_LysB phage lys 67.8 12 0.00026 32.8 5.2 15 98-112 7-21 (135)
140 KOG4117 Heat shock factor bind 67.4 36 0.00078 27.1 7.2 46 122-167 10-55 (73)
141 PF04912 Dynamitin: Dynamitin 67.2 30 0.00066 34.2 8.5 55 150-207 333-387 (388)
142 COG3074 Uncharacterized protei 67.1 63 0.0014 26.1 8.6 67 155-221 6-72 (79)
143 PF05701 WEMBL: Weak chloropla 67.1 1.1E+02 0.0023 31.9 12.6 45 168-212 282-326 (522)
144 PF06295 DUF1043: Protein of u 67.0 23 0.0005 30.2 6.7 51 118-176 16-66 (128)
145 PRK04325 hypothetical protein; 66.9 25 0.00054 27.6 6.3 52 150-208 6-57 (74)
146 TIGR01916 F420_cofE F420-0:gam 66.9 3.8 8.3E-05 39.1 2.1 73 62-135 125-202 (243)
147 PF03670 UPF0184: Uncharacteri 66.7 26 0.00056 28.7 6.5 48 130-181 28-75 (83)
148 PRK03918 chromosome segregatio 66.2 44 0.00095 35.7 10.0 62 136-197 159-223 (880)
149 PF04375 HemX: HemX; InterPro 66.0 59 0.0013 32.2 10.2 77 97-177 40-117 (372)
150 PF10168 Nup88: Nuclear pore c 65.9 41 0.00088 36.6 9.7 91 123-213 560-664 (717)
151 PF00261 Tropomyosin: Tropomyo 65.9 1.1E+02 0.0024 28.2 11.7 14 126-139 146-159 (237)
152 PRK00736 hypothetical protein; 65.8 25 0.00055 27.1 6.1 50 151-207 3-52 (68)
153 COG3883 Uncharacterized protei 65.3 36 0.00078 33.1 8.3 54 155-208 33-86 (265)
154 PF05667 DUF812: Protein of un 65.2 89 0.0019 33.4 11.9 91 124-214 397-487 (594)
155 PF04111 APG6: Autophagy prote 65.2 55 0.0012 31.9 9.7 71 138-208 63-133 (314)
156 PLN03094 Substrate binding sub 65.1 29 0.00063 35.0 8.0 15 60-74 231-245 (370)
157 COG2900 SlyX Uncharacterized p 64.9 27 0.0006 27.9 6.2 39 148-186 3-41 (72)
158 PRK02224 chromosome segregatio 64.6 1.3E+02 0.0027 32.5 13.0 16 16-31 129-144 (880)
159 PF04799 Fzo_mitofusin: fzo-li 64.4 39 0.00085 30.9 7.9 64 139-209 102-165 (171)
160 PRK04098 sec-independent trans 64.3 23 0.00049 32.0 6.3 57 124-181 23-79 (158)
161 COG5283 Phage-related tail pro 64.2 69 0.0015 37.1 11.3 91 126-216 27-120 (1213)
162 PRK03918 chromosome segregatio 64.1 86 0.0019 33.5 11.7 21 268-289 819-839 (880)
163 PRK10698 phage shock protein P 64.1 1.2E+02 0.0026 28.1 11.3 41 172-212 97-137 (222)
164 PF03148 Tektin: Tektin family 64.1 1.2E+02 0.0025 30.3 11.9 13 119-131 203-215 (384)
165 cd07912 Tweety_N N-terminal do 64.1 37 0.0008 34.8 8.5 83 99-186 93-184 (418)
166 cd00193 t_SNARE Soluble NSF (N 63.9 41 0.00089 23.3 6.5 42 153-194 6-47 (60)
167 cd07596 BAR_SNX The Bin/Amphip 63.8 96 0.0021 26.7 13.6 97 124-223 60-173 (218)
168 PF10779 XhlA: Haemolysin XhlA 63.4 25 0.00055 26.9 5.7 15 150-164 3-17 (71)
169 TIGR03185 DNA_S_dndD DNA sulfu 62.5 76 0.0016 33.5 10.8 45 150-194 425-469 (650)
170 COG1256 FlgK Flagellar hook-as 62.5 60 0.0013 34.3 10.0 83 121-207 131-213 (552)
171 PF08702 Fib_alpha: Fibrinogen 62.5 1.1E+02 0.0024 26.9 11.4 96 115-210 23-126 (146)
172 PF08700 Vps51: Vps51/Vps67; 62.5 67 0.0015 24.5 8.0 60 146-208 26-85 (87)
173 smart00787 Spc7 Spc7 kinetocho 62.4 1.3E+02 0.0029 29.5 11.8 36 175-210 205-240 (312)
174 KOG2180 Late Golgi protein sor 62.1 37 0.00081 37.3 8.5 72 145-226 39-110 (793)
175 PF00804 Syntaxin: Syntaxin; 61.7 69 0.0015 24.3 10.5 62 126-187 5-69 (103)
176 PF07851 TMPIT: TMPIT-like pro 61.7 68 0.0015 32.1 9.7 51 136-186 8-58 (330)
177 PF15450 DUF4631: Domain of un 61.6 66 0.0014 34.2 9.9 94 114-207 333-449 (531)
178 PF14257 DUF4349: Domain of un 61.5 25 0.00053 32.6 6.3 34 172-205 160-193 (262)
179 cd00179 SynN Syntaxin N-termin 61.4 77 0.0017 26.3 8.8 19 128-146 6-24 (151)
180 PHA01750 hypothetical protein 61.3 26 0.00056 28.0 5.4 31 118-148 24-55 (75)
181 PRK09110 flagellar motor prote 61.1 60 0.0013 31.4 9.1 94 93-188 4-106 (283)
182 PF09304 Cortex-I_coil: Cortex 60.9 60 0.0013 27.8 7.9 43 123-165 11-56 (107)
183 KOG3385 V-SNARE [Intracellular 60.7 25 0.00054 30.5 5.7 66 152-222 35-100 (118)
184 PF04344 CheZ: Chemotaxis phos 60.6 94 0.002 28.7 9.9 116 124-239 13-158 (214)
185 smart00502 BBC B-Box C-termina 60.6 80 0.0017 24.7 10.9 37 127-163 20-56 (127)
186 PF03114 BAR: BAR domain; Int 59.9 53 0.0011 28.0 7.7 15 61-75 31-45 (229)
187 PF06156 DUF972: Protein of un 59.8 42 0.0009 28.2 6.8 29 123-151 3-31 (107)
188 COG3165 Uncharacterized protei 59.8 33 0.00071 32.3 6.7 66 139-210 134-201 (204)
189 COG1842 PspA Phage shock prote 59.6 1.2E+02 0.0027 28.4 10.6 83 123-210 94-181 (225)
190 PF09748 Med10: Transcription 59.5 87 0.0019 26.8 8.9 45 127-171 2-51 (128)
191 PF10828 DUF2570: Protein of u 59.3 44 0.00095 27.6 6.8 19 97-115 9-27 (110)
192 PLN02678 seryl-tRNA synthetase 59.0 39 0.00084 34.8 7.7 63 144-210 38-100 (448)
193 PF02646 RmuC: RmuC family; I 58.9 48 0.001 31.9 8.0 45 125-169 3-47 (304)
194 PF04791 LMBR1: LMBR1-like mem 58.8 50 0.0011 32.8 8.4 51 93-147 167-222 (471)
195 PF00509 Hemagglutinin: Haemag 58.8 9.8 0.00021 40.3 3.5 62 120-181 363-431 (550)
196 PF05791 Bacillus_HBL: Bacillu 58.2 1.1E+02 0.0023 27.5 9.6 75 130-204 105-179 (184)
197 PRK06975 bifunctional uroporph 58.1 26 0.00057 37.3 6.6 20 179-198 390-409 (656)
198 PF05377 FlaC_arch: Flagella a 58.0 22 0.00048 27.0 4.4 8 156-163 3-10 (55)
199 KOG4593 Mitotic checkpoint pro 57.9 1.4E+02 0.003 32.9 11.8 100 124-223 115-214 (716)
200 TIGR00414 serS seryl-tRNA synt 57.8 86 0.0019 31.6 9.9 67 143-213 34-101 (418)
201 cd07667 BAR_SNX30 The Bin/Amph 57.7 86 0.0019 30.0 9.3 76 150-225 55-130 (240)
202 PLN03184 chloroplast Hsp70; Pr 57.7 1.2E+02 0.0025 32.6 11.2 67 141-209 561-632 (673)
203 PF07106 TBPIP: Tat binding pr 57.6 62 0.0013 28.2 7.8 18 191-208 119-136 (169)
204 PF10241 KxDL: Uncharacterized 57.6 90 0.002 25.0 8.1 54 133-186 23-76 (88)
205 KOG0994 Extracellular matrix g 56.7 1.5E+02 0.0033 35.0 12.1 45 179-223 1582-1626(1758)
206 KOG0240 Kinesin (SMY1 subfamil 56.5 1.2E+02 0.0027 32.7 10.9 107 117-223 385-498 (607)
207 PRK15422 septal ring assembly 56.3 1E+02 0.0022 25.2 8.1 67 155-221 6-72 (79)
208 KOG2196 Nuclear porin [Nuclear 56.2 84 0.0018 30.5 9.0 70 141-210 84-156 (254)
209 PF07439 DUF1515: Protein of u 56.2 63 0.0014 27.9 7.3 55 131-185 4-65 (112)
210 PF09177 Syntaxin-6_N: Syntaxi 56.1 1E+02 0.0022 24.6 9.8 56 146-208 39-97 (97)
211 PF02520 DUF148: Domain of unk 56.1 62 0.0013 26.4 7.2 25 129-153 48-72 (113)
212 PRK05431 seryl-tRNA synthetase 56.0 59 0.0013 32.9 8.4 64 144-211 33-96 (425)
213 PF02646 RmuC: RmuC family; I 55.9 66 0.0014 31.0 8.4 21 177-197 44-64 (304)
214 TIGR00634 recN DNA repair prot 55.9 76 0.0017 32.9 9.4 107 115-225 249-369 (563)
215 PRK11032 hypothetical protein; 55.8 57 0.0012 29.4 7.4 51 137-190 12-66 (160)
216 TIGR00383 corA magnesium Mg(2+ 55.8 89 0.0019 29.3 9.1 85 124-208 145-243 (318)
217 PF06009 Laminin_II: Laminin D 55.7 3.8 8.3E-05 35.0 0.0 38 176-213 47-84 (138)
218 TIGR02231 conserved hypothetic 55.6 1.3E+02 0.0029 30.7 10.9 84 126-209 69-173 (525)
219 PF11559 ADIP: Afadin- and alp 55.5 1.3E+02 0.0028 25.6 13.7 88 121-209 28-115 (151)
220 PF12352 V-SNARE_C: Snare regi 55.5 76 0.0016 23.3 6.9 45 155-199 10-54 (66)
221 KOG2391 Vacuolar sorting prote 55.5 1.4E+02 0.0031 30.3 10.7 68 117-185 218-285 (365)
222 PF05266 DUF724: Protein of un 55.4 1.7E+02 0.0037 26.8 10.7 61 147-207 125-185 (190)
223 PF12761 End3: Actin cytoskele 55.4 1E+02 0.0022 28.8 9.1 28 178-205 157-184 (195)
224 PF06320 GCN5L1: GCN5-like pro 55.3 1.3E+02 0.0027 25.7 9.1 59 156-214 36-94 (121)
225 KOG0996 Structural maintenance 55.0 65 0.0014 37.4 9.1 83 137-219 396-478 (1293)
226 PF01544 CorA: CorA-like Mg2+ 55.0 1.6E+02 0.0035 26.5 10.5 58 119-176 116-174 (292)
227 PF03233 Cauli_AT: Aphid trans 55.0 28 0.0006 31.7 5.3 32 161-192 129-160 (163)
228 PF02994 Transposase_22: L1 tr 54.7 28 0.0006 34.6 5.8 17 194-210 171-187 (370)
229 PF06248 Zw10: Centromere/kine 54.5 1.7E+02 0.0037 30.5 11.7 80 127-208 28-109 (593)
230 TIGR00634 recN DNA repair prot 54.5 86 0.0019 32.5 9.5 44 124-167 269-315 (563)
231 PF09738 DUF2051: Double stran 54.4 35 0.00076 33.5 6.3 74 145-220 104-177 (302)
232 TIGR02894 DNA_bind_RsfA transc 54.4 1.7E+02 0.0038 26.6 11.5 84 142-225 61-148 (161)
233 PF06013 WXG100: Proteins of 1 54.3 80 0.0017 22.8 7.7 15 144-158 23-37 (86)
234 KOG0996 Structural maintenance 54.3 71 0.0015 37.1 9.3 80 143-223 960-1040(1293)
235 PRK10920 putative uroporphyrin 54.2 51 0.0011 33.5 7.6 68 86-164 34-103 (390)
236 KOG0804 Cytoplasmic Zn-finger 54.1 94 0.002 32.7 9.5 39 135-173 364-402 (493)
237 TIGR02492 flgK_ends flagellar 53.8 1.4E+02 0.003 28.8 10.2 57 121-177 127-183 (322)
238 PF07888 CALCOCO1: Calcium bin 53.8 1.7E+02 0.0037 31.3 11.5 38 176-213 285-322 (546)
239 PF04778 LMP: LMP repeated reg 53.7 1.1E+02 0.0023 27.9 8.7 82 133-214 5-95 (157)
240 KOG0860 Synaptobrevin/VAMP-lik 53.6 1.5E+02 0.0033 25.7 9.3 68 152-219 28-95 (116)
241 COG1463 Ttg2C ABC-type transpo 53.4 1.6E+02 0.0035 28.8 10.7 86 133-218 216-301 (359)
242 PF05384 DegS: Sensor protein 53.3 53 0.0011 29.5 6.7 48 154-201 7-54 (159)
243 PF04012 PspA_IM30: PspA/IM30 53.2 1.7E+02 0.0037 26.3 11.7 42 171-212 95-136 (221)
244 PRK11519 tyrosine kinase; Prov 53.1 2.3E+02 0.005 30.5 12.6 27 126-152 265-291 (719)
245 COG5143 SNC1 Synaptobrevin/VAM 53.1 54 0.0012 30.5 7.0 56 133-188 127-185 (190)
246 TIGR02231 conserved hypothetic 53.0 96 0.0021 31.7 9.4 90 128-217 67-167 (525)
247 KOG0976 Rho/Rac1-interacting s 52.9 1.9E+02 0.004 33.0 11.8 102 124-225 273-374 (1265)
248 PF12777 MT: Microtubule-bindi 52.9 59 0.0013 31.7 7.6 61 125-185 218-281 (344)
249 PF15450 DUF4631: Domain of un 52.7 1.4E+02 0.0031 31.7 10.7 44 124-167 336-379 (531)
250 PF04108 APG17: Autophagy prot 52.6 2.6E+02 0.0056 28.2 12.6 23 124-146 206-228 (412)
251 PF10602 RPN7: 26S proteasome 52.5 43 0.00093 29.7 6.1 58 143-202 4-61 (177)
252 KOG1029 Endocytic adaptor prot 52.5 39 0.00084 37.8 6.8 67 131-197 436-502 (1118)
253 COG0598 CorA Mg2+ and Co2+ tra 52.3 2.2E+02 0.0048 27.3 11.5 92 117-208 143-247 (322)
254 COG2959 HemX Uncharacterized e 52.2 1E+02 0.0023 31.6 9.3 51 105-164 49-101 (391)
255 PF04111 APG6: Autophagy prote 52.1 2E+02 0.0044 28.0 11.1 77 142-218 53-129 (314)
256 PF03962 Mnd1: Mnd1 family; I 52.0 1.9E+02 0.004 26.3 10.7 38 113-153 57-94 (188)
257 cd07622 BAR_SNX4 The Bin/Amphi 52.0 1.9E+02 0.0041 26.5 10.9 69 110-190 58-126 (201)
258 TIGR02338 gimC_beta prefoldin, 51.9 34 0.00073 28.1 5.0 21 119-140 59-79 (110)
259 PRK06569 F0F1 ATP synthase sub 51.7 1.7E+02 0.0037 26.3 9.7 49 141-189 36-84 (155)
260 cd07628 BAR_Atg24p The Bin/Amp 51.6 1.1E+02 0.0023 27.5 8.5 74 150-223 8-82 (185)
261 PF12732 YtxH: YtxH-like prote 51.5 45 0.00098 25.4 5.3 35 119-154 18-52 (74)
262 PF10779 XhlA: Haemolysin XhlA 51.2 49 0.0011 25.3 5.5 20 172-191 4-23 (71)
263 PF05739 SNARE: SNARE domain; 51.2 89 0.0019 22.4 8.5 39 170-208 7-45 (63)
264 COG4026 Uncharacterized protei 51.0 58 0.0013 31.6 7.0 15 28-43 17-31 (290)
265 PF01920 Prefoldin_2: Prefoldi 50.9 44 0.00095 26.1 5.3 43 144-186 60-102 (106)
266 KOG3067 Translin family protei 50.8 1E+02 0.0022 29.3 8.4 100 132-231 6-110 (226)
267 COG1511 Predicted membrane pro 50.7 1.7E+02 0.0036 32.0 11.3 102 125-226 148-258 (780)
268 PF02994 Transposase_22: L1 tr 50.7 33 0.00071 34.1 5.6 12 196-207 152-163 (370)
269 PF05701 WEMBL: Weak chloropla 50.6 3.1E+02 0.0068 28.5 13.5 73 155-227 367-439 (522)
270 TIGR01005 eps_transp_fam exopo 50.5 3.4E+02 0.0074 29.0 13.7 15 61-75 199-213 (754)
271 PRK11091 aerobic respiration c 50.5 3.2E+02 0.007 28.7 13.0 33 133-165 90-122 (779)
272 KOG1924 RhoA GTPase effector D 50.5 2E+02 0.0043 32.7 11.6 127 150-277 369-555 (1102)
273 PF06156 DUF972: Protein of un 50.1 27 0.00058 29.4 4.2 55 148-202 3-57 (107)
274 PF00038 Filament: Intermediat 50.1 2.2E+02 0.0048 26.6 12.0 69 145-213 67-135 (312)
275 PF06936 Selenoprotein_S: Sele 50.0 44 0.00096 30.8 5.9 63 93-156 35-97 (190)
276 PF08580 KAR9: Yeast cortical 50.0 70 0.0015 34.7 8.2 46 113-158 12-59 (683)
277 PF06148 COG2: COG (conserved 49.8 43 0.00093 28.1 5.4 36 154-189 63-98 (133)
278 PF05802 EspB: Enterobacterial 49.6 1.8E+02 0.004 29.0 10.2 63 147-209 148-210 (317)
279 TIGR02135 phoU_full phosphate 49.2 1.7E+02 0.0036 24.9 11.3 51 116-166 4-54 (212)
280 PF04799 Fzo_mitofusin: fzo-li 49.1 1E+02 0.0023 28.2 8.0 57 132-188 102-165 (171)
281 PRK10869 recombination and rep 49.0 1E+02 0.0022 32.2 9.1 91 114-208 241-337 (553)
282 COG4717 Uncharacterized conser 48.7 2.2E+02 0.0048 32.4 11.7 113 120-239 735-862 (984)
283 PRK04098 sec-independent trans 48.4 1.9E+02 0.0042 26.2 9.5 52 122-173 39-94 (158)
284 PF11945 WASH_WAHD: WAHD domai 48.4 85 0.0018 30.8 7.8 56 127-182 17-72 (297)
285 PRK13729 conjugal transfer pil 48.3 35 0.00076 35.7 5.5 37 173-209 75-111 (475)
286 cd07667 BAR_SNX30 The Bin/Amph 47.9 2.6E+02 0.0056 26.8 13.5 31 124-154 103-133 (240)
287 PRK11085 magnesium/nickel/coba 47.8 2.8E+02 0.0061 27.2 11.8 22 124-145 142-163 (316)
288 PF10152 DUF2360: Predicted co 47.6 52 0.0011 28.7 5.7 29 180-208 20-48 (148)
289 PLN02867 Probable galacturonos 47.5 80 0.0017 33.6 8.0 35 170-207 123-157 (535)
290 PF10211 Ax_dynein_light: Axon 47.2 2E+02 0.0044 26.0 9.6 22 185-206 167-188 (189)
291 TIGR01010 BexC_CtrB_KpsE polys 47.1 2.1E+02 0.0046 27.6 10.4 85 122-206 164-260 (362)
292 PF06009 Laminin_II: Laminin D 47.0 6.4 0.00014 33.7 0.0 66 152-217 16-81 (138)
293 PF10234 Cluap1: Clusterin-ass 46.9 1.5E+02 0.0034 28.8 9.3 76 130-206 126-201 (267)
294 PF04100 Vps53_N: Vps53-like, 46.8 3E+02 0.0065 27.6 11.6 31 120-150 14-47 (383)
295 KOG1298 Squalene monooxygenase 46.7 7.9 0.00017 40.1 0.6 18 9-26 48-69 (509)
296 TIGR00414 serS seryl-tRNA synt 46.5 89 0.0019 31.5 7.9 73 153-225 30-106 (418)
297 PF02403 Seryl_tRNA_N: Seryl-t 46.2 1.5E+02 0.0033 23.7 10.0 73 151-223 27-102 (108)
298 PF06730 FAM92: FAM92 protein; 46.2 2.7E+02 0.0058 26.5 10.7 76 125-204 15-95 (219)
299 PRK10246 exonuclease subunit S 46.0 2E+02 0.0043 32.4 11.2 66 126-191 782-853 (1047)
300 PF13094 CENP-Q: CENP-Q, a CEN 45.8 1.2E+02 0.0026 26.2 7.7 47 165-211 39-85 (160)
301 KOG2629 Peroxisomal membrane a 45.8 88 0.0019 31.1 7.5 28 239-266 202-229 (300)
302 COG1463 Ttg2C ABC-type transpo 45.8 1.5E+02 0.0032 29.1 9.1 13 215-227 267-279 (359)
303 COG5185 HEC1 Protein involved 45.8 1.9E+02 0.004 31.0 10.1 99 109-207 361-513 (622)
304 KOG0809 SNARE protein TLG2/Syn 45.6 3.1E+02 0.0068 27.4 11.2 102 123-224 134-272 (305)
305 PF10392 COG5: Golgi transport 45.5 1.6E+02 0.0035 24.8 8.3 41 127-167 25-65 (132)
306 cd07651 F-BAR_PombeCdc15_like 45.4 2.4E+02 0.0052 25.7 12.5 38 116-153 95-132 (236)
307 TIGR03818 MotA1 flagellar moto 45.3 1.1E+02 0.0023 29.7 8.0 94 93-188 4-106 (282)
308 KOG4515 Uncharacterized conser 45.3 2.7E+02 0.006 26.4 11.1 53 124-176 91-143 (217)
309 TIGR02977 phageshock_pspA phag 45.3 2.4E+02 0.0053 25.7 10.3 89 122-214 93-185 (219)
310 PRK10361 DNA recombination pro 45.2 3.6E+02 0.0078 28.4 12.2 15 138-152 39-53 (475)
311 TIGR02976 phageshock_pspB phag 45.2 14 0.00031 29.4 1.7 44 118-164 24-67 (75)
312 TIGR01000 bacteriocin_acc bact 45.1 2.1E+02 0.0046 28.7 10.4 13 14-26 67-79 (457)
313 TIGR00606 rad50 rad50. This fa 45.1 3.3E+02 0.0071 31.5 12.9 22 152-173 940-961 (1311)
314 cd07624 BAR_SNX7_30 The Bin/Am 45.0 1.5E+02 0.0032 26.7 8.4 69 150-218 18-86 (200)
315 PF09403 FadA: Adhesion protei 45.0 2.1E+02 0.0045 24.9 12.0 84 124-207 23-112 (126)
316 PRK01919 tatB sec-independent 45.0 1.5E+02 0.0033 27.2 8.4 32 124-155 23-54 (169)
317 KOG1118 Lysophosphatidic acid 44.9 3.5E+02 0.0077 27.5 13.0 46 118-167 126-172 (366)
318 PF07957 DUF3294: Protein of u 44.8 51 0.0011 31.2 5.6 66 147-221 5-78 (216)
319 TIGR01834 PHA_synth_III_E poly 44.8 1.5E+02 0.0031 29.7 8.9 22 187-208 288-309 (320)
320 PF06120 Phage_HK97_TLTM: Tail 44.7 3.3E+02 0.007 27.0 12.4 32 174-205 141-172 (301)
321 KOG4603 TBP-1 interacting prot 44.4 1.1E+02 0.0024 28.6 7.5 59 151-209 84-144 (201)
322 KOG0161 Myosin class II heavy 44.3 4.3E+02 0.0092 32.6 13.9 46 122-167 930-978 (1930)
323 KOG2199 Signal transducing ada 44.2 81 0.0018 32.8 7.2 29 188-216 317-345 (462)
324 PF15290 Syntaphilin: Golgi-lo 44.0 2.4E+02 0.0052 28.1 10.1 49 159-207 88-143 (305)
325 PF14817 HAUS5: HAUS augmin-li 43.9 1.8E+02 0.004 31.5 10.1 80 148-227 81-160 (632)
326 COG1283 NptA Na+/phosphate sym 43.9 2.3E+02 0.0049 30.3 10.6 97 123-226 337-449 (533)
327 TIGR03007 pepcterm_ChnLen poly 43.9 3.3E+02 0.007 27.4 11.4 15 61-75 166-180 (498)
328 PF04012 PspA_IM30: PspA/IM30 43.8 1.7E+02 0.0036 26.3 8.6 15 61-75 28-42 (221)
329 PF04108 APG17: Autophagy prot 43.7 2.5E+02 0.0053 28.4 10.5 31 123-153 201-231 (412)
330 PLN02320 seryl-tRNA synthetase 43.7 1.3E+02 0.0028 31.7 8.8 92 110-210 63-159 (502)
331 PLN03223 Polycystin cation cha 43.7 1.2E+02 0.0026 36.0 9.1 91 122-217 767-859 (1634)
332 PF05266 DUF724: Protein of un 43.6 2.6E+02 0.0057 25.6 9.9 15 61-75 48-62 (190)
333 PF05549 Allexi_40kDa: Allexiv 43.4 2.4E+02 0.0053 27.7 9.9 9 279-287 190-198 (271)
334 PF04906 Tweety: Tweety; Inte 43.3 2.6E+02 0.0056 28.3 10.6 87 99-187 73-162 (406)
335 PF10267 Tmemb_cc2: Predicted 43.3 3.3E+02 0.0072 27.9 11.4 81 128-208 219-318 (395)
336 KOG0994 Extracellular matrix g 43.2 1.2E+02 0.0027 35.6 9.0 68 137-208 1227-1294(1758)
337 PF03233 Cauli_AT: Aphid trans 43.1 1.8E+02 0.004 26.5 8.6 21 191-211 138-158 (163)
338 PF02388 FemAB: FemAB family; 42.9 54 0.0012 32.7 5.8 36 119-154 233-268 (406)
339 PF12238 MSA-2c: Merozoite sur 42.9 1.9E+02 0.0041 27.3 8.9 19 157-175 7-25 (205)
340 COG2433 Uncharacterized conser 42.8 1.7E+02 0.0037 31.9 9.5 72 135-206 418-492 (652)
341 PF13805 Pil1: Eisosome compon 42.8 3.4E+02 0.0073 26.6 12.4 80 127-210 95-180 (271)
342 TIGR02132 phaR_Bmeg polyhydrox 42.7 1.2E+02 0.0026 28.3 7.4 18 153-170 121-138 (189)
343 PRK09841 cryptic autophosphory 42.5 4.4E+02 0.0095 28.4 12.7 24 128-151 267-290 (726)
344 PF10186 Atg14: UV radiation r 42.5 2.7E+02 0.0058 25.4 13.3 41 154-194 64-104 (302)
345 cd07621 BAR_SNX5_6 The Bin/Amp 42.5 1.1E+02 0.0023 28.9 7.3 76 118-196 49-125 (219)
346 PF00957 Synaptobrevin: Synapt 42.5 1.6E+02 0.0035 22.9 8.0 21 132-152 7-27 (89)
347 COG3352 FlaC Putative archaeal 42.4 1.7E+02 0.0037 26.7 8.1 79 115-194 63-142 (157)
348 PF03915 AIP3: Actin interacti 42.3 4.1E+02 0.0089 27.5 12.8 66 120-185 205-271 (424)
349 COG1579 Zn-ribbon protein, pos 42.3 3.2E+02 0.0069 26.2 12.3 31 154-184 104-134 (239)
350 TIGR02680 conserved hypothetic 42.0 4.1E+02 0.0089 31.1 13.1 43 169-211 923-965 (1353)
351 TIGR03752 conj_TIGR03752 integ 42.0 1.8E+02 0.004 30.6 9.5 58 145-208 86-143 (472)
352 PF03962 Mnd1: Mnd1 family; I 42.0 2.6E+02 0.0056 25.4 9.5 32 118-149 66-97 (188)
353 PRK11115 transcriptional regul 42.0 2.4E+02 0.0052 25.1 9.3 46 121-166 20-65 (236)
354 PF12777 MT: Microtubule-bindi 41.9 2E+02 0.0043 28.1 9.3 8 102-109 195-202 (344)
355 PRK10807 paraquat-inducible pr 41.9 87 0.0019 32.9 7.3 22 141-162 438-459 (547)
356 PRK01156 chromosome segregatio 41.7 2.9E+02 0.0062 30.1 11.3 25 136-160 163-187 (895)
357 PF04124 Dor1: Dor1-like famil 41.6 3.4E+02 0.0073 26.3 11.1 69 142-210 17-89 (338)
358 TIGR03007 pepcterm_ChnLen poly 41.6 1.8E+02 0.0039 29.1 9.2 31 123-153 156-186 (498)
359 KOG1961 Vacuolar sorting prote 41.5 1.2E+02 0.0025 33.2 8.1 53 150-202 72-124 (683)
360 PF07106 TBPIP: Tat binding pr 41.5 87 0.0019 27.3 6.2 60 125-188 76-137 (169)
361 PRK09039 hypothetical protein; 41.5 3.6E+02 0.0078 26.6 13.0 49 170-218 126-174 (343)
362 PF05478 Prominin: Prominin; 41.5 2.5E+02 0.0054 30.8 10.8 34 118-151 159-196 (806)
363 PF02181 FH2: Formin Homology 41.4 1.7E+02 0.0038 28.1 8.8 65 162-226 276-347 (370)
364 PRK13169 DNA replication intia 41.3 1.1E+02 0.0024 26.0 6.6 32 122-153 2-33 (110)
365 PRK15396 murein lipoprotein; P 41.2 85 0.0018 25.3 5.5 35 151-185 30-64 (78)
366 PF05377 FlaC_arch: Flagella a 41.2 1.2E+02 0.0026 23.1 6.1 11 153-163 7-17 (55)
367 PF10267 Tmemb_cc2: Predicted 41.1 4.2E+02 0.009 27.2 13.0 32 144-175 224-256 (395)
368 KOG3758 Uncharacterized conser 41.1 2.4E+02 0.0052 30.8 10.3 78 123-203 51-128 (655)
369 cd07647 F-BAR_PSTPIP The F-BAR 41.0 2.9E+02 0.0063 25.4 10.9 41 119-159 97-137 (239)
370 PF10191 COG7: Golgi complex c 41.0 2.5E+02 0.0054 30.8 10.7 65 127-191 37-101 (766)
371 cd04786 HTH_MerR-like_sg7 Heli 41.0 93 0.002 26.5 6.2 19 190-208 94-112 (131)
372 PF10883 DUF2681: Protein of u 40.7 31 0.00066 28.4 3.0 18 98-115 11-28 (87)
373 COG0497 RecN ATPase involved i 40.7 1.4E+02 0.003 32.0 8.5 99 132-230 266-378 (557)
374 PF08702 Fib_alpha: Fibrinogen 40.7 2.5E+02 0.0055 24.6 12.3 45 140-184 23-67 (146)
375 PRK13293 F420-0--gamma-glutamy 40.7 23 0.0005 33.9 2.7 73 63-135 127-203 (245)
376 PHA03395 p10 fibrous body prot 40.6 78 0.0017 26.2 5.3 8 156-163 14-21 (87)
377 cd00024 CHROMO Chromatin organ 40.6 28 0.0006 24.0 2.5 24 106-129 22-45 (55)
378 PF12352 V-SNARE_C: Snare regi 40.5 1.5E+02 0.0032 21.8 7.7 34 161-201 30-63 (66)
379 PF08172 CASP_C: CASP C termin 40.5 89 0.0019 29.8 6.5 44 139-182 79-122 (248)
380 PF09763 Sec3_C: Exocyst compl 40.5 1.5E+02 0.0032 31.6 8.8 66 138-203 8-73 (701)
381 COG0497 RecN ATPase involved i 40.4 1.3E+02 0.0028 32.2 8.2 54 125-179 222-281 (557)
382 PF11802 CENP-K: Centromere-as 39.8 3.5E+02 0.0075 26.6 10.4 112 61-210 57-169 (268)
383 PRK04863 mukB cell division pr 39.7 4.7E+02 0.01 31.2 13.2 15 61-75 235-249 (1486)
384 KOG4674 Uncharacterized conser 39.6 4.7E+02 0.01 32.1 13.2 79 124-205 776-854 (1822)
385 PF10481 CENP-F_N: Cenp-F N-te 39.5 4E+02 0.0087 26.6 11.0 51 146-196 29-82 (307)
386 COG4477 EzrA Negative regulato 39.5 2.8E+02 0.0061 29.9 10.4 79 103-182 236-338 (570)
387 KOG0978 E3 ubiquitin ligase in 39.3 3.4E+02 0.0074 30.0 11.3 84 124-207 534-620 (698)
388 PF15112 DUF4559: Domain of un 39.3 73 0.0016 31.7 5.9 75 120-194 203-284 (307)
389 PRK04654 sec-independent trans 39.2 2.7E+02 0.0058 26.5 9.3 33 124-156 23-55 (214)
390 PF05508 Ran-binding: RanGTP-b 39.2 1.9E+02 0.0042 28.7 8.7 47 120-166 15-69 (302)
391 PF06825 HSBP1: Heat shock fac 39.1 90 0.002 23.6 5.1 33 135-167 10-42 (54)
392 PF01996 F420_ligase: F420-0:G 39.1 5.3 0.00012 37.2 -1.8 73 62-135 133-210 (228)
393 KOG0804 Cytoplasmic Zn-finger 39.0 3.1E+02 0.0067 29.0 10.5 76 130-208 366-441 (493)
394 PHA03395 p10 fibrous body prot 38.9 1.2E+02 0.0026 25.1 6.2 49 127-176 10-58 (87)
395 KOG4559 Uncharacterized conser 38.8 1.1E+02 0.0023 26.5 6.0 49 125-173 58-106 (120)
396 KOG0630 Predicted pyridoxal-de 38.8 1.7E+02 0.0037 31.8 8.7 37 243-279 787-827 (838)
397 KOG3990 Uncharacterized conser 38.8 1E+02 0.0022 30.3 6.7 52 154-206 233-285 (305)
398 PF06013 WXG100: Proteins of 1 38.8 1.5E+02 0.0032 21.3 9.6 29 137-165 9-37 (86)
399 COG4026 Uncharacterized protei 38.7 3.9E+02 0.0084 26.2 10.8 8 123-130 109-116 (290)
400 PRK07739 flgK flagellar hook-a 38.4 2.7E+02 0.0058 28.8 10.0 57 121-177 139-195 (507)
401 PRK05683 flgK flagellar hook-a 38.3 2.7E+02 0.0059 30.2 10.4 59 121-179 127-185 (676)
402 PF06705 SF-assemblin: SF-asse 38.3 3.3E+02 0.0071 25.2 12.8 35 124-158 88-122 (247)
403 PRK06665 flgK flagellar hook-a 38.2 2.5E+02 0.0054 30.0 10.0 59 121-179 139-197 (627)
404 KOG3595 Dyneins, heavy chain [ 38.0 3.1E+02 0.0067 32.2 11.4 20 114-133 893-912 (1395)
405 PF12128 DUF3584: Protein of u 37.9 3.4E+02 0.0075 31.1 11.6 84 127-210 287-381 (1201)
406 PF14257 DUF4349: Domain of un 37.8 1E+02 0.0023 28.5 6.5 27 172-198 167-193 (262)
407 PRK09343 prefoldin subunit bet 37.8 83 0.0018 26.6 5.3 47 140-186 65-111 (121)
408 PF00957 Synaptobrevin: Synapt 37.8 1.9E+02 0.0042 22.4 9.6 24 136-159 4-27 (89)
409 PF06005 DUF904: Protein of un 37.6 2E+02 0.0044 22.6 7.1 56 155-210 6-68 (72)
410 cd00179 SynN Syntaxin N-termin 37.6 96 0.0021 25.8 5.7 14 194-207 54-67 (151)
411 PLN03094 Substrate binding sub 37.4 96 0.0021 31.4 6.5 14 34-47 232-245 (370)
412 COG3910 Predicted ATPase [Gene 37.3 43 0.00092 32.0 3.8 44 64-114 25-70 (233)
413 PF15070 GOLGA2L5: Putative go 37.2 5.7E+02 0.012 27.7 12.9 23 144-166 41-63 (617)
414 KOG2211 Predicted Golgi transp 37.0 3.7E+02 0.0081 30.0 11.0 79 113-196 56-143 (797)
415 PF04977 DivIC: Septum formati 36.9 1.1E+02 0.0024 22.7 5.4 31 149-179 20-50 (80)
416 PRK11677 hypothetical protein; 36.8 2.2E+02 0.0048 25.0 7.9 41 138-178 32-72 (134)
417 PLN02320 seryl-tRNA synthetase 36.8 1.3E+02 0.0027 31.8 7.4 30 192-221 134-163 (502)
418 PF08614 ATG16: Autophagy prot 36.8 2.1E+02 0.0046 25.6 8.1 53 142-194 119-171 (194)
419 PF14182 YgaB: YgaB-like prote 36.6 2.4E+02 0.0051 23.1 7.6 47 152-198 13-64 (79)
420 PF04678 DUF607: Protein of un 36.6 1.1E+02 0.0023 27.4 6.1 51 126-177 38-88 (180)
421 PLN02678 seryl-tRNA synthetase 36.6 3.4E+02 0.0074 28.1 10.4 87 135-223 13-106 (448)
422 COG1392 Phosphate transport re 36.5 3.6E+02 0.0078 25.2 10.7 97 133-230 85-198 (217)
423 PTZ00446 vacuolar sorting prot 36.5 2.3E+02 0.005 26.2 8.3 74 127-204 103-182 (191)
424 KOG0517 Beta-spectrin [Cytoske 36.4 2.1E+02 0.0045 35.4 9.6 72 141-213 918-1009(2473)
425 PF13874 Nup54: Nucleoporin co 36.2 1.4E+02 0.003 25.7 6.5 69 124-192 54-125 (141)
426 COG5173 SEC6 Exocyst complex s 36.1 4.7E+02 0.01 28.7 11.5 71 153-226 36-108 (742)
427 PRK07191 flgK flagellar hook-a 36.1 3.1E+02 0.0068 27.9 10.0 56 121-176 127-182 (456)
428 smart00298 CHROMO Chromatin or 35.9 45 0.00097 22.8 2.9 23 106-128 20-42 (55)
429 PF12329 TMF_DNA_bd: TATA elem 35.9 2.1E+02 0.0046 22.3 8.5 53 160-212 5-57 (74)
430 cd07649 F-BAR_GAS7 The F-BAR ( 35.5 3.8E+02 0.0082 25.1 12.3 109 119-227 98-212 (233)
431 cd07307 BAR The Bin/Amphiphysi 35.5 2.4E+02 0.0053 22.9 10.2 26 175-200 95-120 (194)
432 PF05911 DUF869: Plant protein 35.4 3.3E+02 0.0071 30.3 10.6 91 137-230 29-120 (769)
433 cd07596 BAR_SNX The Bin/Amphip 35.3 2.9E+02 0.0063 23.7 10.1 95 119-213 30-125 (218)
434 KOG3385 V-SNARE [Intracellular 35.2 1.4E+02 0.0029 26.1 6.2 59 163-221 32-90 (118)
435 PF02520 DUF148: Domain of unk 35.2 1.1E+02 0.0025 24.8 5.6 15 121-135 29-43 (113)
436 cd07630 BAR_SNX_like The Bin/A 35.2 1.8E+02 0.0038 26.7 7.4 80 117-196 28-108 (198)
437 PF03961 DUF342: Protein of un 35.1 1.9E+02 0.0041 29.2 8.3 26 125-150 331-356 (451)
438 cd07655 F-BAR_PACSIN The F-BAR 35.1 3.8E+02 0.0083 25.1 9.9 33 122-154 113-145 (258)
439 KOG1103 Predicted coiled-coil 35.1 4.6E+02 0.01 27.3 10.8 55 158-212 243-297 (561)
440 PRK11091 aerobic respiration c 35.0 5.2E+02 0.011 27.2 11.7 44 140-183 76-119 (779)
441 PHA03332 membrane glycoprotein 34.9 3.9E+02 0.0084 31.4 11.1 54 150-203 902-963 (1328)
442 KOG4677 Golgi integral membran 34.9 4E+02 0.0086 28.5 10.5 74 139-212 249-347 (554)
443 PHA00276 phage lambda Rz-like 34.8 1.7E+02 0.0036 26.3 6.9 32 161-192 50-81 (144)
444 PF03908 Sec20: Sec20; InterP 34.8 2.3E+02 0.005 22.4 9.2 74 147-221 2-75 (92)
445 PF05278 PEARLI-4: Arabidopsis 34.8 4.5E+02 0.0098 25.8 12.4 60 169-228 202-261 (269)
446 PF14728 PHTB1_C: PTHB1 C-term 34.8 3.8E+02 0.0083 27.1 10.3 77 120-200 210-294 (377)
447 PF06825 HSBP1: Heat shock fac 34.7 1.2E+02 0.0025 23.0 5.0 38 130-167 12-49 (54)
448 COG5124 Protein predicted to b 34.6 4E+02 0.0087 25.2 10.9 79 113-195 70-161 (209)
449 PF12795 MscS_porin: Mechanose 34.6 3.7E+02 0.008 24.7 10.0 55 151-205 83-137 (240)
450 PF10174 Cast: RIM-binding pro 34.5 4.1E+02 0.0088 29.6 11.1 80 126-205 313-395 (775)
451 COG4980 GvpP Gas vesicle prote 34.4 3.1E+02 0.0066 23.7 8.8 19 183-201 92-110 (115)
452 PF02302 PTS_IIB: PTS system, 34.3 12 0.00027 28.4 -0.2 18 7-24 1-18 (90)
453 COG1340 Uncharacterized archae 34.3 4.8E+02 0.01 25.9 12.7 71 136-206 52-125 (294)
454 PRK09458 pspB phage shock prot 34.3 28 0.00061 28.0 1.8 44 118-164 24-67 (75)
455 PF02346 Vac_Fusion: Chordopox 34.2 1.4E+02 0.0029 22.9 5.4 52 154-205 2-53 (57)
456 PF07544 Med9: RNA polymerase 34.1 85 0.0018 24.9 4.5 57 131-188 24-80 (83)
457 PRK00290 dnaK molecular chaper 34.0 3E+02 0.0066 28.9 9.8 69 141-211 522-595 (627)
458 PRK10499 PTS system N,N'-diace 33.9 24 0.00051 29.1 1.4 74 7-85 5-82 (106)
459 KOG2911 Uncharacterized conser 33.8 4.3E+02 0.0094 27.7 10.5 86 125-211 237-357 (439)
460 PF05667 DUF812: Protein of un 33.6 3.4E+02 0.0073 29.2 10.1 36 154-189 343-378 (594)
461 PRK12482 flagellar motor prote 33.6 2.3E+02 0.005 27.7 8.3 93 94-188 5-106 (287)
462 KOG0963 Transcription factor/C 33.6 4.3E+02 0.0094 28.9 10.8 76 135-210 178-264 (629)
463 KOG0018 Structural maintenance 33.4 2.9E+02 0.0063 32.1 9.9 86 115-209 668-753 (1141)
464 PF13863 DUF4200: Domain of un 33.4 2.6E+02 0.0057 22.7 10.8 81 130-210 23-103 (126)
465 PRK13169 DNA replication intia 33.3 95 0.0021 26.4 4.9 53 148-200 3-55 (110)
466 PRK15396 murein lipoprotein; P 33.2 1.5E+02 0.0033 23.8 5.8 6 214-219 65-70 (78)
467 KOG4670 Uncharacterized conser 33.1 24 0.00052 37.5 1.6 82 139-223 368-451 (602)
468 PRK01156 chromosome segregatio 33.1 3.1E+02 0.0067 29.8 9.9 46 149-194 193-238 (895)
469 COG5185 HEC1 Protein involved 33.0 4.9E+02 0.011 28.0 10.9 92 131-223 274-375 (622)
470 smart00397 t_SNARE Helical reg 33.0 1.7E+02 0.0037 20.4 7.1 25 153-177 12-36 (66)
471 COG2096 cob(I)alamin adenosylt 33.0 1.1E+02 0.0025 28.3 5.8 64 137-209 38-102 (184)
472 KOG3091 Nuclear pore complex, 32.9 1.9E+02 0.0042 30.6 8.0 62 149-210 337-398 (508)
473 PTZ00464 SNF-7-like protein; P 32.9 4.1E+02 0.0089 24.8 12.4 28 124-151 21-48 (211)
474 PF13747 DUF4164: Domain of un 32.8 2.7E+02 0.0058 22.6 9.9 51 170-220 35-85 (89)
475 cd00176 SPEC Spectrin repeats, 32.8 2.8E+02 0.0061 22.9 9.0 52 177-229 75-126 (213)
476 KOG3583 Uncharacterized conser 32.7 2.9E+02 0.0063 26.9 8.5 41 189-229 138-189 (279)
477 PRK08147 flgK flagellar hook-a 32.7 3.7E+02 0.0079 27.9 10.0 59 121-179 128-186 (547)
478 cd00089 HR1 Protein kinase C-r 32.6 2.2E+02 0.0048 21.5 6.6 59 148-208 4-62 (72)
479 PF07851 TMPIT: TMPIT-like pro 32.6 2.3E+02 0.0049 28.5 8.1 28 124-151 21-48 (330)
480 PF10212 TTKRSYEDQ: Predicted 32.6 3.6E+02 0.0078 28.8 9.9 38 147-184 414-451 (518)
481 PF15079 DUF4546: Domain of un 32.4 2E+02 0.0044 26.8 7.2 55 149-213 50-104 (205)
482 PF12329 TMF_DNA_bd: TATA elem 32.3 2.5E+02 0.0053 22.0 6.8 55 151-205 17-71 (74)
483 PF05276 SH3BP5: SH3 domain-bi 32.2 4.6E+02 0.0099 25.1 10.4 82 127-208 20-111 (239)
484 TIGR03017 EpsF chain length de 32.2 5E+02 0.011 25.5 11.0 71 129-199 255-336 (444)
485 COG5665 NOT5 CCR4-NOT transcri 32.1 1.1E+02 0.0025 31.8 6.1 43 126-174 117-159 (548)
486 COG0598 CorA Mg2+ and Co2+ tra 32.0 1.1E+02 0.0023 29.5 5.7 72 135-206 180-252 (322)
487 PRK05431 seryl-tRNA synthetase 31.9 1.7E+02 0.0036 29.7 7.2 72 154-225 29-103 (425)
488 KOG2196 Nuclear porin [Nuclear 31.8 2.1E+02 0.0046 27.9 7.5 30 133-162 128-157 (254)
489 TIGR00153 conserved hypothetic 31.8 3.6E+02 0.0078 24.3 8.8 16 193-208 152-167 (216)
490 PRK09303 adaptive-response sen 31.8 1.1E+02 0.0024 29.4 5.8 19 168-186 158-176 (380)
491 PF14661 HAUS6_N: HAUS augmin- 31.6 4.3E+02 0.0094 24.6 9.7 87 126-212 144-245 (247)
492 KOG0977 Nuclear envelope prote 31.5 3.1E+02 0.0068 29.4 9.4 76 124-199 116-194 (546)
493 TIGR02350 prok_dnaK chaperone 31.5 3.7E+02 0.008 27.9 9.8 88 122-211 499-593 (595)
494 PF09726 Macoilin: Transmembra 31.4 2.2E+02 0.0048 31.1 8.5 84 127-210 526-609 (697)
495 PF10828 DUF2570: Protein of u 31.4 2.9E+02 0.0063 22.8 7.5 60 151-210 23-82 (110)
496 KOG0977 Nuclear envelope prote 31.4 4.3E+02 0.0092 28.4 10.3 104 126-229 72-175 (546)
497 PF05164 ZapA: Cell division p 31.3 1.4E+02 0.003 22.7 5.2 35 129-163 53-89 (89)
498 PF10046 BLOC1_2: Biogenesis o 31.2 2.9E+02 0.0062 22.4 11.0 89 142-230 3-94 (99)
499 PHA03332 membrane glycoprotein 31.1 6.8E+02 0.015 29.5 12.2 119 126-245 910-1029(1328)
500 cd07623 BAR_SNX1_2 The Bin/Amp 31.1 3E+02 0.0066 25.2 8.3 81 117-199 36-117 (224)
No 1
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=100.00 E-value=6.3e-59 Score=393.18 Aligned_cols=120 Identities=48% Similarity=0.775 Sum_probs=116.5
Q ss_pred chhHH-HHHHhhhheeeEEecccCcCcchhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHH
Q 021664 92 KKYGV-IVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQ 170 (309)
Q Consensus 92 ~~y~l-~a~iGavGYgYmwWKGws~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~ 170 (309)
+.|++ +|++||+|||||||||||||||||||||||+|||++|+|||||||++|++|||||+||||+||+|||+|+|+++
T Consensus 6 ~~~i~paa~~gavGY~Y~wwKGws~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~ 85 (126)
T PF07889_consen 6 SSLIVPAAAIGAVGYGYMWWKGWSFSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISK 85 (126)
T ss_pred cchhhHHHHHHHHHheeeeecCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34455 68999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 021664 171 ATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (309)
Q Consensus 171 ~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (309)
+|++||+++|+|+++|++|+++||++|++||+||++||+||
T Consensus 86 ~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~~Q 126 (126)
T PF07889_consen 86 QIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEEKQ 126 (126)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999998
No 2
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=96.97 E-value=0.0016 Score=53.72 Aligned_cols=88 Identities=17% Similarity=0.329 Sum_probs=45.6
Q ss_pred hHHHHHHhhhheeeEEecccCcCcchhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHH-
Q 021664 94 YGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQAT- 172 (309)
Q Consensus 94 y~l~a~iGavGYgYmwWKGws~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i- 172 (309)
++++.++.+++|+++||+ ++- =||+|..+.. |.+|+++.|.++++...-.+.+
T Consensus 9 w~ii~a~~~~~~~~~~~~---l~~-~~a~~~~~~~----------------------l~~~~~~~~~Rl~~lE~~l~~LP 62 (106)
T PF10805_consen 9 WGIIWAVFGIAGGIFWLW---LRR-TYAKREDIEK----------------------LEERLDEHDRRLQALETKLEHLP 62 (106)
T ss_pred cHHHHHHHHHHHHHHHHH---HHH-hhccHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHhCC
Confidence 445555556777777774 222 3677655543 3333334444444444434444
Q ss_pred -HHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHh
Q 021664 173 -QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (309)
Q Consensus 173 -~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (309)
++||..++..++++.+|++.+...+++++..++.+
T Consensus 63 t~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 63 TRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555554444443
No 3
>PRK10884 SH3 domain-containing protein; Provisional
Probab=96.02 E-value=0.23 Score=45.72 Aligned_cols=99 Identities=13% Similarity=0.246 Sum_probs=74.0
Q ss_pred heeeEEe----cccCcCcchhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 021664 104 GYGYVWW----KGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (309)
Q Consensus 104 GYgYmwW----KGws~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v 179 (309)
||.+++- .|| +.+=+-.+..++..-+..+-++|+++.+.|+.+...+.+|-..+..++++.......+++|-..+
T Consensus 66 ~w~~Vr~~~G~~GW-V~~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L 144 (206)
T PRK10884 66 NYAQIRDSKGRTAW-IPLKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKL 144 (206)
T ss_pred CEEEEEeCCCCEEe-EEHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888873 388 55555566778999999999999999999999999999999999888888766666666665555
Q ss_pred hhchhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 021664 180 RGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (309)
Q Consensus 180 ~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (309)
+ .+++..+.-++.|+.+++.+..+
T Consensus 145 ~-------~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 145 K-------NQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 44555666666666666666644
No 4
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=95.93 E-value=0.081 Score=51.98 Aligned_cols=10 Identities=40% Similarity=0.956 Sum_probs=7.4
Q ss_pred hhhheeeEEe
Q 021664 101 VAVGYGYVWW 110 (309)
Q Consensus 101 GavGYgYmwW 110 (309)
.++|+||.||
T Consensus 41 ~alg~~~~~~ 50 (372)
T PF04375_consen 41 LALGAGGWYW 50 (372)
T ss_pred HHHHHHHHHH
Confidence 5678887767
No 5
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.33 E-value=0.069 Score=51.99 Aligned_cols=71 Identities=17% Similarity=0.420 Sum_probs=36.4
Q ss_pred hhHH-HHHHhhhhee-eEEecccCcCcchhhhhhh--------HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhH
Q 021664 93 KYGV-IVVIVAVGYG-YVWWKGWKLPDMMFATRRS--------LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDV 162 (309)
Q Consensus 93 ~y~l-~a~iGavGYg-YmwWKGws~SDlMfVTKRn--------ms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~kl 162 (309)
-|++ +++.+++-|+ |-.||-| +-=+||.-.++ |.+=...+.|-+.++-+.++..++.++..-+.++..|
T Consensus 85 dy~vmAvi~aGi~y~~y~~~K~Y-V~P~~l~~~~~k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L 163 (300)
T KOG2629|consen 85 DYFVMAVILAGIAYAAYRFVKSY-VLPRFLGESKDKLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRAL 163 (300)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH-HHHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5766 4455566774 7889998 44455654444 3333444444444444444444444444333333333
Q ss_pred HH
Q 021664 163 NK 164 (309)
Q Consensus 163 de 164 (309)
++
T Consensus 164 ~~ 165 (300)
T KOG2629|consen 164 AS 165 (300)
T ss_pred HH
Confidence 33
No 6
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=94.94 E-value=0.19 Score=42.33 Aligned_cols=82 Identities=17% Similarity=0.264 Sum_probs=46.5
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHH
Q 021664 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 198 (309)
Q Consensus 119 MfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~ 198 (309)
=|||++-+...=.+--.-|..+-..+... ....+|+-|..+.+.|-|-++..+.++. .-|.-++.|-....
T Consensus 21 ~YVT~kef~efKd~~~q~L~kiE~~~~~l--~qgeqI~kL~e~V~~QGEqIkel~~e~k-------~qgktL~~I~~~L~ 91 (102)
T PF01519_consen 21 KYVTHKEFDEFKDSNNQRLTKIENKLDQL--AQGEQINKLTEKVDKQGEQIKELQVEQK-------AQGKTLQLILKTLQ 91 (102)
T ss_dssp TB-BHHHHHHH---HTTB-BHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhhccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 39999998866544444455555444432 3445555555555555555555555554 44555666666777
Q ss_pred HHHHHHHHhhh
Q 021664 199 TLESKLIEIEG 209 (309)
Q Consensus 199 ~Le~Ki~~ie~ 209 (309)
.+..+||+||+
T Consensus 92 ~inkRLD~~E~ 102 (102)
T PF01519_consen 92 SINKRLDKMES 102 (102)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHhhccC
Confidence 77788888874
No 7
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=94.85 E-value=1.6 Score=43.96 Aligned_cols=31 Identities=26% Similarity=0.272 Sum_probs=20.2
Q ss_pred cceeccccCcccccccCCCCCCCCCCCCCCC
Q 021664 235 ELVQASRYTLSRTTLELPGITPSSRSGSLHP 265 (309)
Q Consensus 235 ~~~Q~~~~~s~~~ale~~~~~p~sr~~slpp 265 (309)
.-++..++.|.+|+=|+||.-|-.|..--.|
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (553)
T PRK15048 518 SPLTNKPQTPSRPASEQPPAQPRLRIAEQDP 548 (553)
T ss_pred CcccccccccccccccCCccCccCCcCCCCC
Confidence 3345567777888888877776666554433
No 8
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=93.85 E-value=1 Score=35.34 Aligned_cols=72 Identities=13% Similarity=0.237 Sum_probs=57.3
Q ss_pred hHHHHHHH---HHHHHHHHHHhHhhhhhhHHHHHHHHHHH--HHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021664 136 QLEDVYSS---ISAAQRQLSSKITSVDRDVNKIVEISQAT--QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (309)
Q Consensus 136 qLeqVs~s---L~~aKrhLsqRI~~vD~klde~~eis~~i--~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (309)
.|+++.+. +.....+|..+|+++..+|+++.++.... -+.+. -..++.+|..+|.+++..+..|..|+..++
T Consensus 15 ~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R~~~L~ 91 (92)
T PF14712_consen 15 DLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKRADKLQ 91 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444 45567799999999999999999966544 34444 888999999999999999999999998875
No 9
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.69 E-value=2.7 Score=39.35 Aligned_cols=92 Identities=24% Similarity=0.259 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHhHH-HHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHH
Q 021664 125 SLSDACNSVARQLE-DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (309)
Q Consensus 125 nms~Av~sv~KqLe-qVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~K 203 (309)
.|++|...|-.|-+ .+...-..+......+++.+........+.....++|+.+++..+.....++++++.....||..
T Consensus 166 dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~ 245 (312)
T PF00038_consen 166 DLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQ 245 (312)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhh
Confidence 38899999988877 44556668888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhHhH
Q 021664 204 LIEIEGKQDITTL 216 (309)
Q Consensus 204 i~~ie~kQd~Tn~ 216 (309)
|..++..-+....
T Consensus 246 l~~le~~~~~~~~ 258 (312)
T PF00038_consen 246 LRELEQRLDEERE 258 (312)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9988865444433
No 10
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.41 E-value=0.95 Score=45.35 Aligned_cols=87 Identities=11% Similarity=0.181 Sum_probs=64.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 021664 132 SVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (309)
Q Consensus 132 sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (309)
.+..++++....+...++.+...|+.+..++++.....+.++.++..++.++.+++.+++.....+..++.++..++.+-
T Consensus 192 ~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l 271 (562)
T PHA02562 192 HIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKI 271 (562)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence 33334444445555566666677888888888888888889999999999999999888888888888888888777665
Q ss_pred hhHhHHH
Q 021664 212 DITTLGV 218 (309)
Q Consensus 212 d~Tn~GV 218 (309)
+.....+
T Consensus 272 ~~~~~~~ 278 (562)
T PHA02562 272 EQFQKVI 278 (562)
T ss_pred HHHHHHH
Confidence 5444433
No 11
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=93.29 E-value=1.4 Score=44.41 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=11.9
Q ss_pred CCCchhHH--HHHHhhhheeeEEe
Q 021664 89 TGAKKYGV--IVVIVAVGYGYVWW 110 (309)
Q Consensus 89 ~gg~~y~l--~a~iGavGYgYmwW 110 (309)
.+|..+++ ++++-++|+||-||
T Consensus 34 ~~g~~l~~~aili~la~g~g~y~~ 57 (390)
T PRK10920 34 RTGLVLSAVAIAIALAAGAGLYYH 57 (390)
T ss_pred CccHHHHHHHHHHHHHHhhHHHHH
Confidence 34454444 23334777777666
No 12
>PRK11637 AmiB activator; Provisional
Probab=93.22 E-value=1.2 Score=44.09 Aligned_cols=81 Identities=11% Similarity=0.154 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHhHHHHHHHHH---HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHH
Q 021664 125 SLSDACNSVARQLEDVYSSIS---AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (309)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~---~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le 201 (309)
...+=...+-+++++....+. ..++++.+.|+.++.++++..+-...++.++..+..+++....++...+.-+..++
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555444 33444556666667766666666666666666666666666666666666555555
Q ss_pred HHHH
Q 021664 202 SKLI 205 (309)
Q Consensus 202 ~Ki~ 205 (309)
..+.
T Consensus 124 ~~l~ 127 (428)
T PRK11637 124 RLLA 127 (428)
T ss_pred HHHH
Confidence 5443
No 13
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=93.18 E-value=2.2 Score=39.42 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=59.1
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhh
Q 021664 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (309)
Q Consensus 135 KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (309)
.++.++......+.++..+||++.++.-++..+-.++.++|+..++.-.++...-+++.+.-+..|+.+++.++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~ 101 (251)
T PF11932_consen 24 DQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQ 101 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666777888888888888888888888888888888887777777777777777777777777775543
No 14
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=93.14 E-value=1.6 Score=45.27 Aligned_cols=51 Identities=6% Similarity=0.090 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 021664 161 DVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (309)
Q Consensus 161 klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (309)
+|.++++-.+++++++..+|.+++.+....+..++.++.||..+.+++..+
T Consensus 70 ALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555544444333333444444445555555554443
No 15
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=92.76 E-value=0.14 Score=50.47 Aligned_cols=88 Identities=17% Similarity=0.246 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHH---HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHH
Q 021664 124 RSLSDACNSVARQLEDVYSSISAAQ---RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (309)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aK---rhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~L 200 (309)
.+|+.++.++...|..++..|++-+ .+|+..|..+...+.+.......++..|..+..|+.+.+.||-...-.|..|
T Consensus 66 ~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdL 145 (326)
T PF04582_consen 66 QDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDL 145 (326)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhH
Confidence 3455555555555555555554444 3566777777777777888888888888888888888888888888888888
Q ss_pred HHHHHHhhhhh
Q 021664 201 ESKLIEIEGKQ 211 (309)
Q Consensus 201 e~Ki~~ie~kQ 211 (309)
|.|+..+|...
T Consensus 146 e~RV~~LEs~~ 156 (326)
T PF04582_consen 146 ESRVKALESGS 156 (326)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHhcCC
Confidence 88888888653
No 16
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=92.15 E-value=2.6 Score=36.52 Aligned_cols=38 Identities=16% Similarity=0.336 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHH
Q 021664 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT 177 (309)
Q Consensus 140 Vs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~ 177 (309)
+++-+=.|||.|+.=...|..+||+.-|-...+|++++
T Consensus 30 ~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLs 67 (126)
T PF07889_consen 30 FSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLS 67 (126)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555667777777777777777776666666666654
No 17
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=92.12 E-value=3.3 Score=35.92 Aligned_cols=50 Identities=20% Similarity=0.399 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 021664 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQ 173 (309)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~ 173 (309)
|.+-+-|.-...||.+-.+.++....+|.+||-.+|..+....+...+-+
T Consensus 27 ~~~l~Lc~R~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~erq 76 (131)
T PF10158_consen 27 RPVLRLCSRYQEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMVERQ 76 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788999999999999999999999999999999998876655544333
No 18
>PRK11637 AmiB activator; Provisional
Probab=91.97 E-value=1.4 Score=43.65 Aligned_cols=78 Identities=13% Similarity=0.187 Sum_probs=43.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHH---HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHh
Q 021664 131 NSVARQLEDVYSSISAAQRQLS---SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (309)
Q Consensus 131 ~sv~KqLeqVs~sL~~aKrhLs---qRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (309)
+.+-++|+++...+...++.+. .++..+..++++..+-...+.+++.+++.+++.+..+++.++.-+..++.+|+..
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666655555555 5555555555555555555555555555555555555555555555555555554
Q ss_pred h
Q 021664 208 E 208 (309)
Q Consensus 208 e 208 (309)
+
T Consensus 123 ~ 123 (428)
T PRK11637 123 E 123 (428)
T ss_pred H
Confidence 4
No 19
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=91.04 E-value=3.9 Score=35.55 Aligned_cols=63 Identities=16% Similarity=0.222 Sum_probs=53.2
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhh
Q 021664 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (309)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (309)
.|+.||+-|...||+...--+.+.+.+.++....+++..-+..+..-...+|.|++.++.+-.
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 477888888888888888888888888888888888888888888888888888888887643
No 20
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=91.01 E-value=10 Score=33.62 Aligned_cols=97 Identities=21% Similarity=0.313 Sum_probs=51.4
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHHHHHH----HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh-hhhhhHHHHH
Q 021664 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQ----LSSKITSVDRDVNKIVEISQATQEEVTILRGRSK-LIGDEFQSVR 194 (309)
Q Consensus 120 fVTKRnms~Av~sv~KqLeqVs~sL~~aKrh----LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~-~ig~Dv~~v~ 194 (309)
+|||..+.+..-..-..+.++-..+...+|+ |....+.|...+|.. ...+++|+..++.++. .|..+=..++
T Consensus 43 ~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l---~~~L~~ei~~l~a~~klD~n~eK~~~r 119 (177)
T PF07798_consen 43 LVTKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKL---RQELREEINKLRAEVKLDLNLEKGRIR 119 (177)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 6888888887777777777777666655554 333333444433333 2345555555544332 1111122444
Q ss_pred HHHHHHHHHHHHhhhhhhhHhHHHH
Q 021664 195 DIVQTLESKLIEIEGKQDITTLGVK 219 (309)
Q Consensus 195 ~~V~~Le~Ki~~ie~kQd~Tn~GV~ 219 (309)
.....+|.||.+++.+-+....++.
T Consensus 120 ~e~~~~~~ki~e~~~ki~~ei~~lr 144 (177)
T PF07798_consen 120 EEQAKQELKIQELNNKIDTEIANLR 144 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554444443
No 21
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=90.67 E-value=3.5 Score=32.46 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=20.5
Q ss_pred hhHhHHHHHHHHHHHhhcc-CCCccceecccc
Q 021664 212 DITTLGVKKLCDRARELEN-GRPTELVQASRY 242 (309)
Q Consensus 212 d~Tn~GV~~LC~f~~~~~~-~~~~~~~Q~~~~ 242 (309)
......+..+|.|++..-. +...+++|..+.
T Consensus 85 ~~~l~~l~~~~~~~e~~l~~~~~~e~L~~~~~ 116 (127)
T smart00502 85 TQKQEKLSHAINFTEEALNSGDPTELLLSKKL 116 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 3456778888998876544 455677775543
No 22
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=90.49 E-value=2.4 Score=44.62 Aligned_cols=86 Identities=17% Similarity=0.309 Sum_probs=66.4
Q ss_pred cCcchhh----hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhH
Q 021664 115 LPDMMFA----TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEF 190 (309)
Q Consensus 115 ~SDlMfV----TKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv 190 (309)
+++..|+ |||||...++ +.+=.....+-+.=+.+..+|+++...++++++.-..|.+.+...+.+...+-.++
T Consensus 6 L~~~~~~nt~~aRr~LR~~iE---~~~l~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~ 82 (618)
T PF06419_consen 6 LSEFGFENTLEARRNLRSDIE---KRLLKINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEA 82 (618)
T ss_pred hcccccCCcHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666776 8999986554 55556666666777788889999999999999999999999999988887777777
Q ss_pred HHHHHHHHHHHHH
Q 021664 191 QSVRDIVQTLESK 203 (309)
Q Consensus 191 ~~v~~~V~~Le~K 203 (309)
+.++.--..+|.|
T Consensus 83 ~~L~~~~~~~~~k 95 (618)
T PF06419_consen 83 SELREQKEELELK 95 (618)
T ss_pred HHHHHHHHHHHHH
Confidence 7777444444433
No 23
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=90.30 E-value=10 Score=32.58 Aligned_cols=15 Identities=7% Similarity=0.337 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhcC
Q 021664 61 LLAEVSSVQQELSHV 75 (309)
Q Consensus 61 L~aQV~~LaqEl~~L 75 (309)
+...++.++++.+.|
T Consensus 45 ~~~~i~~ia~qt~lL 59 (213)
T PF00015_consen 45 ILSLINEIAEQTNLL 59 (213)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHh
Confidence 777777778887777
No 24
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=90.16 E-value=3.8 Score=33.21 Aligned_cols=81 Identities=12% Similarity=0.168 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHH
Q 021664 141 YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKK 220 (309)
Q Consensus 141 s~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~ 220 (309)
..+|.++-++|.+.|++|+..++...+..... .++...+..++.|-..+-+-..+.+.+...+|..|.-.-..+..
T Consensus 3 ~~~le~al~rL~~aid~LE~~v~~r~~~~~~~----~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~ 78 (89)
T PF13747_consen 3 TYSLEAALTRLEAAIDRLEKAVDRRLERDRKR----DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDS 78 (89)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777766644433 44455556666666666666666667777777766666665555
Q ss_pred HHHHH
Q 021664 221 LCDRA 225 (309)
Q Consensus 221 LC~f~ 225 (309)
..+-+
T Consensus 79 a~e~I 83 (89)
T PF13747_consen 79 AIETI 83 (89)
T ss_pred HHHHH
Confidence 54444
No 25
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=89.52 E-value=4.7 Score=45.43 Aligned_cols=98 Identities=15% Similarity=0.207 Sum_probs=79.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Q 021664 134 ARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (309)
Q Consensus 134 ~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (309)
-+..++.-+.+...=+...+++...+.|+-+..+-.+.+++|++.-.+.++.+..|++..+..+..++.++.+++..-+-
T Consensus 290 i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~ 369 (1074)
T KOG0250|consen 290 IKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRK 369 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555556667777777888888888888899999999999999999999999999999999999998888
Q ss_pred HhHHHHHHHHHHHhhccC
Q 021664 214 TTLGVKKLCDRARELENG 231 (309)
Q Consensus 214 Tn~GV~~LC~f~~~~~~~ 231 (309)
.-.-+++||.-+..++..
T Consensus 370 ~k~~~d~l~k~I~~~~~~ 387 (1074)
T KOG0250|consen 370 LKKEVDRLEKQIADLEKQ 387 (1074)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888999999888765543
No 26
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=89.27 E-value=13 Score=31.88 Aligned_cols=27 Identities=7% Similarity=0.164 Sum_probs=9.9
Q ss_pred HhhhchhhhhhhHHHHHHHHHHHHHHH
Q 021664 178 ILRGRSKLIGDEFQSVRDIVQTLESKL 204 (309)
Q Consensus 178 ~v~~dl~~ig~Dv~~v~~~V~~Le~Ki 204 (309)
+....+..|...++.+...+..+...+
T Consensus 132 ~~~~~l~~i~~~~~~i~~~i~~i~~~~ 158 (213)
T PF00015_consen 132 ETSESLEEIAESVEEISDSIEEISESA 158 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchhhhhhhhhhhHHhhhhHHHHhhH
Confidence 333333333333333333333333333
No 27
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=89.24 E-value=6.6 Score=36.36 Aligned_cols=78 Identities=9% Similarity=0.184 Sum_probs=60.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHh
Q 021664 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (309)
Q Consensus 130 v~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (309)
.....++..+--+.+...|+.|.++|+.+...++....-.+..++.|...+..+..+..+++++..+-..|..=|.++
T Consensus 33 ~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m 110 (251)
T PF11932_consen 33 WVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQM 110 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666667778888999999999999999988888888888888888888888888888887666665544433
No 28
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=89.02 E-value=3.9 Score=32.14 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=9.3
Q ss_pred hhHHHHHHHHHHHHHHHHHh
Q 021664 188 DEFQSVRDIVQTLESKLIEI 207 (309)
Q Consensus 188 ~Dv~~v~~~V~~Le~Ki~~i 207 (309)
+.++.+-+.|..++..+.++
T Consensus 68 ~~v~~~~~~v~~~g~~v~~l 87 (90)
T PF06103_consen 68 EKVDPVFEAVADLGESVSEL 87 (90)
T ss_pred HhHHHHHHHHHHHHHHHHHH
Confidence 33444444455555444443
No 29
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=88.11 E-value=3.3 Score=43.89 Aligned_cols=39 Identities=21% Similarity=0.228 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 021664 141 YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (309)
Q Consensus 141 s~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v 179 (309)
......+.+.+.+|+..++.++.+...-+.+++..+.++
T Consensus 373 ~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l 411 (656)
T PRK06975 373 TEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDL 411 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556677777777777766666666666555544
No 30
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=88.10 E-value=10 Score=30.86 Aligned_cols=68 Identities=13% Similarity=0.117 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhh---hHHHHHHHHHHHHHHHHHhhhh
Q 021664 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGD---EFQSVRDIVQTLESKLIEIEGK 210 (309)
Q Consensus 143 sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~---Dv~~v~~~V~~Le~Ki~~ie~k 210 (309)
-|...-+..+.|...+++.......-.+..+....+++.-+.+|.. .|..+-.+|..||.=..++|.|
T Consensus 25 LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k 95 (99)
T PF10046_consen 25 LLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESK 95 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666666666666666655555554 6666777777776666666654
No 31
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=88.06 E-value=24 Score=33.30 Aligned_cols=67 Identities=13% Similarity=0.093 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHH
Q 021664 160 RDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAR 226 (309)
Q Consensus 160 ~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~ 226 (309)
.-|.|...-......|=...-+.|-+|..|+..+..++..++.--.+.+.+=...-..+.-|=+++.
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in 98 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEIN 98 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444554444445555444455556666666666666655555444444433333333333434443
No 32
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=87.51 E-value=12 Score=32.78 Aligned_cols=8 Identities=13% Similarity=0.422 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 021664 219 KKLCDRAR 226 (309)
Q Consensus 219 ~~LC~f~~ 226 (309)
.+|++.++
T Consensus 175 ~~l~~~~~ 182 (191)
T PF04156_consen 175 QQLEEKIQ 182 (191)
T ss_pred HHHHHHHH
Confidence 33444433
No 33
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=87.49 E-value=11 Score=31.52 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhHHHHHHHH
Q 021664 126 LSDACNSVARQLEDVYSSI 144 (309)
Q Consensus 126 ms~Av~sv~KqLeqVs~sL 144 (309)
|.+.+..+..+++.+.+.|
T Consensus 3 l~~~~~~l~~~~~~l~~~l 21 (202)
T PF01442_consen 3 LDDRLDSLSSRTEELEERL 21 (202)
T ss_dssp HHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 34
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=87.48 E-value=6 Score=42.81 Aligned_cols=33 Identities=15% Similarity=0.285 Sum_probs=23.8
Q ss_pred HHHHHHhHHHHHHH-HHHHHHHHHHhHhhhhhhH
Q 021664 130 CNSVARQLEDVYSS-ISAAQRQLSSKITSVDRDV 162 (309)
Q Consensus 130 v~sv~KqLeqVs~s-L~~aKrhLsqRI~~vD~kl 162 (309)
++++.+|+++|-.. ...++.|+...|++.+..+
T Consensus 189 l~~~~~qi~~l~~~ny~~~~~~v~~~L~~~~~~l 222 (806)
T PF05478_consen 189 LNDTPQQIDHLLVQNYSELKDHVSSDLDNIGSLL 222 (806)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 45667777777777 7778888888887776544
No 35
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=87.39 E-value=8.3 Score=37.46 Aligned_cols=100 Identities=12% Similarity=0.164 Sum_probs=74.6
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhh-------------
Q 021664 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGD------------- 188 (309)
Q Consensus 122 TKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~------------- 188 (309)
.-+.+-.=..++..|+|.++..|...+.+|...+..+|.--++..+..+++..-+...+..+..+..
T Consensus 85 ~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~~I~ag~~~~~~l~~~~~~~~~~~~~~d 164 (333)
T PF05816_consen 85 SLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEKYIAAGELKLEELEAELLPALQADAEGD 164 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccccC
Confidence 3344444568999999999999999999999999999988887777776666555444433333332
Q ss_pred -----hHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHH
Q 021664 189 -----EFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (309)
Q Consensus 189 -----Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (309)
....+.+.+..||.|+..++-.+.++..+.--+
T Consensus 165 ~~~~q~~~~~~~~l~~leqRi~DL~~~~~va~Q~~pqi 202 (333)
T PF05816_consen 165 QMDAQELADLEQALFRLEQRIQDLQLSRQVAIQTAPQI 202 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 345667788999999999998888887776543
No 36
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=86.94 E-value=11 Score=33.35 Aligned_cols=83 Identities=12% Similarity=0.247 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHH-HHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHH
Q 021664 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI-VEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (309)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~-~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~K 203 (309)
.++..+..+-.||..+.+.|...-..+..|++.+-..+++. ..+++.+|.|.+.+..++.+.-..|-++......|=..
T Consensus 35 ql~~~~d~i~~~L~~l~~~l~~ll~~l~~~l~~l~~~L~~aln~Lq~~~rneLtnlnsil~nL~ssvTNin~tLnnLl~a 114 (140)
T PF04513_consen 35 QLTTILDAIQTQLNALSTDLTNLLADLDTRLDTLLTNLNDALNQLQDTLRNELTNLNSILNNLTSSVTNINATLNNLLQA 114 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 35677888888888888888888888888888777777654 46678888888888888887777777777666655555
Q ss_pred HHHh
Q 021664 204 LIEI 207 (309)
Q Consensus 204 i~~i 207 (309)
+.-+
T Consensus 115 ln~l 118 (140)
T PF04513_consen 115 LNNL 118 (140)
T ss_pred HHHh
Confidence 5544
No 37
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=86.70 E-value=14 Score=38.51 Aligned_cols=121 Identities=13% Similarity=0.271 Sum_probs=73.4
Q ss_pred hheeeEEecccCcCcchhhhh--------------------hhHHHHHHHHHHhHHHHHHHHH---HHHHHHHHhHhhhh
Q 021664 103 VGYGYVWWKGWKLPDMMFATR--------------------RSLSDACNSVARQLEDVYSSIS---AAQRQLSSKITSVD 159 (309)
Q Consensus 103 vGYgYmwWKGws~SDlMfVTK--------------------Rnms~Av~sv~KqLeqVs~sL~---~aKrhLsqRI~~vD 159 (309)
-||-=|-=+|..|.++=.-++ +.....+..+.+++|++|+.|. .||+...+....+.
T Consensus 237 ~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~ 316 (569)
T PRK04778 237 AGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLP 316 (569)
T ss_pred HHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 355556667888887532222 2334556677788888888776 46777777777777
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhc----------hhhhhhhHHHHH---------------------HHHHHHHHHHHHhh
Q 021664 160 RDVNKIVEISQATQEEVTILRGR----------SKLIGDEFQSVR---------------------DIVQTLESKLIEIE 208 (309)
Q Consensus 160 ~klde~~eis~~i~~eV~~v~~d----------l~~ig~Dv~~v~---------------------~~V~~Le~Ki~~ie 208 (309)
+.++...+-...++.|+..++.. +..+..+++.+. .....|..++..++
T Consensus 317 ~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie 396 (569)
T PRK04778 317 DFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIE 396 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776666665 334444444333 33444555555666
Q ss_pred hhhhhHhHHHHHHHH
Q 021664 209 GKQDITTLGVKKLCD 223 (309)
Q Consensus 209 ~kQd~Tn~GV~~LC~ 223 (309)
..|.--..-+..|+.
T Consensus 397 ~eq~ei~e~l~~Lrk 411 (569)
T PRK04778 397 KEQEKLSEMLQGLRK 411 (569)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666655555555543
No 38
>PHA02562 46 endonuclease subunit; Provisional
Probab=86.48 E-value=11 Score=37.84 Aligned_cols=75 Identities=8% Similarity=0.187 Sum_probs=33.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHH
Q 021664 131 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (309)
Q Consensus 131 ~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ 206 (309)
+.+.++++.+.+.+...+.... +++.+..++.+........++++.........+..++++++..+..++.++.+
T Consensus 309 ~~l~~~l~~l~~~i~~~~~~~~-~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~ 383 (562)
T PHA02562 309 KELQHSLEKLDTAIDELEEIMD-EFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAK 383 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHH
Confidence 3344444444444442222221 23333444444444444444445444455555555555555555555554443
No 39
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.30 E-value=5.1 Score=38.76 Aligned_cols=67 Identities=15% Similarity=0.289 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHH
Q 021664 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (309)
Q Consensus 138 eqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki 204 (309)
|.-+..+...++.+...|+.+|.++++...=....++++++.+.++.....||+.+..-+.....++
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777888888999999999999998899999998888888888888888776655444443
No 40
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=85.92 E-value=3.4 Score=38.18 Aligned_cols=57 Identities=16% Similarity=0.309 Sum_probs=35.7
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHh
Q 021664 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (309)
Q Consensus 151 LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (309)
+..|+-+|..|+|.+.|.-..+-+.+.+-++--...+.|+..+.+-+..||.|+|.|
T Consensus 77 vA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~ 133 (189)
T TIGR02132 77 VASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKI 133 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666655555555555444555566667777777777777777654
No 41
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=85.70 E-value=12 Score=33.52 Aligned_cols=87 Identities=11% Similarity=0.171 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHH--HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhH
Q 021664 137 LEDVYSSISAAQRQ--LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT 214 (309)
Q Consensus 137 LeqVs~sL~~aKrh--LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~T 214 (309)
=+++++.|....+| +.+||+.|....+...+-++.|..++.+++.+|..+- ..=+.|+..+...+...
T Consensus 11 d~~L~~~L~~l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~----------~~~~~~~~~~~~~~~~~ 80 (188)
T PF10018_consen 11 DDELSSALEELQEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP----------DQADEKLKSIPKAEKRP 80 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHhhhccccccccccCC
Confidence 34444444444444 4567777777666666666666666666665544433 22233344444333332
Q ss_pred hHHHHHHHHHHHhhccCCCc
Q 021664 215 TLGVKKLCDRARELENGRPT 234 (309)
Q Consensus 215 n~GV~~LC~f~~~~~~~~~~ 234 (309)
- -+..|..|++++.....+
T Consensus 81 v-~~~eLL~YA~rISk~t~~ 99 (188)
T PF10018_consen 81 V-DYEELLSYAHRISKFTSA 99 (188)
T ss_pred C-CHHHHHHHHHHHHHhcCC
Confidence 2 277888999887655444
No 42
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=85.58 E-value=3.4 Score=33.09 Aligned_cols=53 Identities=8% Similarity=0.236 Sum_probs=27.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021664 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG 181 (309)
Q Consensus 128 ~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~ 181 (309)
++++.|..+.+.++..+...+..+ .+++.+..|||.+.+--..+.+.|++++.
T Consensus 11 ~dIk~vd~KVdaLq~~V~~l~~~~-~~v~~l~~klDa~~~~l~~l~~~V~~I~~ 63 (75)
T PF05531_consen 11 QDIKAVDDKVDALQTQVDDLESNL-PDVTELNKKLDAQSAQLTTLNTKVNEIQD 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555554444443 34444555555555555555555544443
No 43
>PRK10884 SH3 domain-containing protein; Provisional
Probab=85.17 E-value=11 Score=34.99 Aligned_cols=70 Identities=10% Similarity=0.247 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHH
Q 021664 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (309)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~ 194 (309)
.|.+-++.+..+|++.......-+.++.++++..+...++.++--++.++++..++.++....-+.+.++
T Consensus 97 ~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556666666666666666666666666666666666666666666666555555444443333333
No 44
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=84.82 E-value=2.2 Score=35.26 Aligned_cols=55 Identities=22% Similarity=0.344 Sum_probs=45.9
Q ss_pred HHhhhheeeEEecccCcCcchhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHH
Q 021664 99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI 178 (309)
Q Consensus 99 ~iGavGYgYmwWKGws~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~ 178 (309)
++.-+|.||+-.+- +..|+++|..||+.++..+++..+..+..+++++.
T Consensus 70 v~v~iG~g~~vE~~-------------------------------~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~ 118 (126)
T TIGR00293 70 VLVSIGSGYYVEKD-------------------------------AEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQ 118 (126)
T ss_pred EEEEcCCCEEEEec-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578999987764 47899999999999999999999999999999887
Q ss_pred hhhchh
Q 021664 179 LRGRSK 184 (309)
Q Consensus 179 v~~dl~ 184 (309)
+...+.
T Consensus 119 i~~~l~ 124 (126)
T TIGR00293 119 LEQEAQ 124 (126)
T ss_pred HHHHHh
Confidence 776544
No 45
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=84.73 E-value=9.5 Score=30.60 Aligned_cols=63 Identities=17% Similarity=0.255 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHH----HHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHH
Q 021664 144 ISAAQRQLSSKITSVDRDVNKIVEISQ----ATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (309)
Q Consensus 144 L~~aKrhLsqRI~~vD~klde~~eis~----~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ 206 (309)
+-++.+++.+|++.=-..|.++.+.++ .++++...=...+..+..|++.++.-++.|..|+..
T Consensus 16 ~l~~Q~~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~~ 82 (88)
T PF10241_consen 16 ILALQAQTLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLAK 82 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777766666654 345555566667778888999999999999988864
No 46
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=84.47 E-value=27 Score=35.31 Aligned_cols=59 Identities=14% Similarity=0.167 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHH
Q 021664 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIV 197 (309)
Q Consensus 139 qVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V 197 (309)
+.++.+...=.+++.-.+.+....+++.+..+++.+.+.++...+.++-...+.+...+
T Consensus 270 ~~s~~v~~~s~el~~~~~~ls~~~~~qa~~i~~i~~s~eeis~~~~e~~~~~~~~~~~~ 328 (553)
T PRK15048 270 EGSDAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNARQASQLA 328 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555566666666666666666665555555555555554444444433
No 47
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=84.45 E-value=12 Score=37.40 Aligned_cols=76 Identities=16% Similarity=0.289 Sum_probs=36.4
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHhHhhh-------hhhHHHHHHHHHHHHHHHHHhhhchhhhh
Q 021664 122 TRRSLSDACNSVARQLEDVYSSISAAQ-------RQLSSKITSV-------DRDVNKIVEISQATQEEVTILRGRSKLIG 187 (309)
Q Consensus 122 TKRnms~Av~sv~KqLeqVs~sL~~aK-------rhLsqRI~~v-------D~klde~~eis~~i~~eV~~v~~dl~~ig 187 (309)
=+.+++++...+..||+.+++.+..+- |||.++++.+ -++|.+..+--++...-|++....|.+|.
T Consensus 228 ~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~Is 307 (359)
T PF10498_consen 228 HKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEIS 307 (359)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344444444445555555544444444 4444444433 23333333344444444555555666666
Q ss_pred hhHHHHHHHH
Q 021664 188 DEFQSVRDIV 197 (309)
Q Consensus 188 ~Dv~~v~~~V 197 (309)
++++.+++-+
T Consensus 308 eeLe~vK~em 317 (359)
T PF10498_consen 308 EELEQVKQEM 317 (359)
T ss_pred HHHHHHHHHH
Confidence 6666655433
No 48
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=84.26 E-value=9.9 Score=39.00 Aligned_cols=83 Identities=17% Similarity=0.223 Sum_probs=65.2
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhH
Q 021664 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT 214 (309)
Q Consensus 135 KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~T 214 (309)
++|+|....|++.. ++|...+++..+...-.+..++++..+..-+.++..|++.+++.+..++..+..++..+ ..
T Consensus 38 ~~l~q~q~ei~~~~----~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~-r~ 112 (420)
T COG4942 38 KQLKQIQKEIAALE----KKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE-RE 112 (420)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH-HH
Confidence 88888888877654 45566677777777777888888888888889999999999999999999999888766 66
Q ss_pred hHHHHHHH
Q 021664 215 TLGVKKLC 222 (309)
Q Consensus 215 n~GV~~LC 222 (309)
..++....
T Consensus 113 qr~~La~~ 120 (420)
T COG4942 113 QRRRLAEQ 120 (420)
T ss_pred HHHHHHHH
Confidence 66665443
No 49
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=83.99 E-value=4.5 Score=40.29 Aligned_cols=43 Identities=21% Similarity=0.415 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHhhcc
Q 021664 188 DEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELEN 230 (309)
Q Consensus 188 ~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~~~~ 230 (309)
.+++.++..+..|-.||.+|..+=..|-.=|..+|+=++.+++
T Consensus 57 ~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk~LD~ 99 (383)
T PF04100_consen 57 EDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRDIKQLDN 99 (383)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555544
No 50
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=83.93 E-value=28 Score=30.32 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHh
Q 021664 161 DVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (309)
Q Consensus 161 klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (309)
.+++..+....+.+.+.++...+.+....++.....+..+..++..+
T Consensus 40 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 86 (262)
T smart00283 40 NADEIAATAQSAAEAAEEGREAVEDAITAMDQIREVVEEAVSAVEEL 86 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333
No 51
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=83.70 E-value=17 Score=33.48 Aligned_cols=69 Identities=13% Similarity=0.261 Sum_probs=50.9
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHH
Q 021664 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKK 220 (309)
Q Consensus 152 sqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~ 220 (309)
-.||+.|..++.+...+.........++...+..+-.|++....-+..+|.|+..++..-.....-+.-
T Consensus 91 eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~ 159 (237)
T PF00261_consen 91 EERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKS 159 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777777888888888888888888888888888888887654444444433
No 52
>PRK09039 hypothetical protein; Validated
Probab=83.69 E-value=14 Score=36.28 Aligned_cols=86 Identities=9% Similarity=0.256 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHH-------HHHHHHHHHhhh
Q 021664 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIV-------QTLESKLIEIEG 209 (309)
Q Consensus 137 LeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V-------~~Le~Ki~~ie~ 209 (309)
|+..++....+..++..|+..+.++|++.+..+....-+|..++..++....-+..++..+ .....||+.++.
T Consensus 100 Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~ 179 (343)
T PRK09039 100 LQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGR 179 (343)
T ss_pred HHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444455778888888888888888877666665555555555544444444444 444445555554
Q ss_pred hhhhHhHH-HHHHH
Q 021664 210 KQDITTLG-VKKLC 222 (309)
Q Consensus 210 kQd~Tn~G-V~~LC 222 (309)
.=+.+... +..|-
T Consensus 180 ~L~~a~~~~~~~l~ 193 (343)
T PRK09039 180 RLNVALAQRVQELN 193 (343)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444333 44443
No 53
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=83.67 E-value=7.5 Score=32.15 Aligned_cols=65 Identities=11% Similarity=0.235 Sum_probs=49.3
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh--hhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHH
Q 021664 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI--GDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (309)
Q Consensus 152 sqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~i--g~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~ 223 (309)
..+++.+++++++ ..+-++.+..++.+. .+|+..++..+..++++++.+++.=+--++-+.+|.+
T Consensus 34 ~~~~~~l~~~~~~-------~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 34 REDIEKLEERLDE-------HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666654 466677777777888 8888888888889999999998887777777777754
No 54
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=83.52 E-value=20 Score=37.24 Aligned_cols=17 Identities=12% Similarity=0.374 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHhc
Q 021664 58 FNDLLAEVSSVQQELSH 74 (309)
Q Consensus 58 ~~dL~aQV~~LaqEl~~ 74 (309)
|.++..+|..|+++|.+
T Consensus 251 ~~~i~~~i~~l~~~i~~ 267 (569)
T PRK04778 251 HLDIEKEIQDLKEQIDE 267 (569)
T ss_pred CCChHHHHHHHHHHHHH
Confidence 44488888888888888
No 55
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=82.70 E-value=5.9 Score=35.81 Aligned_cols=63 Identities=19% Similarity=0.279 Sum_probs=48.6
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021664 145 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (309)
Q Consensus 145 ~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (309)
..-...|..+.+.|+.++++..+.-+...|+|-- =.|=+=+.+|+.+...+..||.+|..+|.
T Consensus 84 ~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvs--Yqll~hr~e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 84 SVDFEQLEAQLNTITRRLDELERQLQQKADDVVS--YQLLQHRREMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566777777777888888888888888843 34557788999999999999999999663
No 56
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=82.15 E-value=9.9 Score=30.02 Aligned_cols=78 Identities=15% Similarity=0.320 Sum_probs=40.3
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHH
Q 021664 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 198 (309)
Q Consensus 119 MfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~ 198 (309)
|+-+++-+.+...-++..+......-...++.+..++++.=.+||=. +|+|....+.- +...+.-+.
T Consensus 1 M~~~~~~~d~~~~~~~~~~~~~~~~~~e~e~~~r~~l~~~l~kldlV------tREEFd~q~~~-------L~~~r~kl~ 67 (79)
T PF04380_consen 1 MQDPNKIFDDLAKQISEALPAAQGPREEIEKNIRARLQSALSKLDLV------TREEFDAQKAV-------LARTREKLE 67 (79)
T ss_pred CCCchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHCCCC------cHHHHHHHHHH-------HHHHHHHHH
Confidence 44445556666655655555555555556666666666555555422 23333222222 344455555
Q ss_pred HHHHHHHHhhh
Q 021664 199 TLESKLIEIEG 209 (309)
Q Consensus 199 ~Le~Ki~~ie~ 209 (309)
.||.||..+|.
T Consensus 68 ~LEarl~~LE~ 78 (79)
T PF04380_consen 68 ALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHhc
Confidence 66666666654
No 57
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=82.06 E-value=23 Score=36.48 Aligned_cols=94 Identities=17% Similarity=0.320 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHhHHHHHHH------------HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHH-----hhhchhhh
Q 021664 124 RSLSDACNSVARQLEDVYSS------------ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI-----LRGRSKLI 186 (309)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~s------------L~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~-----v~~dl~~i 186 (309)
+.+..-++++-.++.+|.++ +.+.|++|+.+=|+|-.|.|+.+.+.+.+|++|.. ....++.+
T Consensus 176 ~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v 255 (426)
T smart00806 176 TEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETV 255 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34455566666666777654 55679999999999999999999999999999753 22445566
Q ss_pred hhhHHHHHHHHH---------------HHHHHHHHhhhhhhhHhHH
Q 021664 187 GDEFQSVRDIVQ---------------TLESKLIEIEGKQDITTLG 217 (309)
Q Consensus 187 g~Dv~~v~~~V~---------------~Le~Ki~~ie~kQd~Tn~G 217 (309)
+.|++....-+. .||.-|+.|..-|+|=|.=
T Consensus 256 ~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQ 301 (426)
T smart00806 256 QKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQ 301 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655554444 4667778888888876653
No 58
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=82.06 E-value=15 Score=28.76 Aligned_cols=27 Identities=7% Similarity=0.316 Sum_probs=12.6
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 021664 119 MFATRRSLSDACNSVARQLEDVYSSIS 145 (309)
Q Consensus 119 MfVTKRnms~Av~sv~KqLeqVs~sL~ 145 (309)
++.+-+++......+.+.++++.+.+.
T Consensus 17 l~~~l~~l~~~l~~~~~ti~~l~~~~~ 43 (90)
T PF06103_consen 17 LIKVLKKLKKTLDEVNKTIDTLQEQVD 43 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344455555554444444444444443
No 59
>PRK04406 hypothetical protein; Provisional
Probab=81.87 E-value=6.8 Score=30.94 Aligned_cols=48 Identities=10% Similarity=0.124 Sum_probs=35.2
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHH
Q 021664 146 AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSV 193 (309)
Q Consensus 146 ~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v 193 (309)
.|...+.+||+.|..++--|....+...+.|++-+..+......+..+
T Consensus 4 ~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 4 KTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678899999999999998888888888877776654444333333
No 60
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=81.84 E-value=84 Score=34.51 Aligned_cols=102 Identities=10% Similarity=0.185 Sum_probs=60.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHH
Q 021664 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (309)
Q Consensus 127 s~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ 206 (309)
.+-+..+-..+....+.-...|..+..+++.+..++.......+.-++.+ ..+..|+..+..++..-.++|..
T Consensus 372 k~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri-------~~LE~ELr~l~~~A~E~q~~Lns 444 (717)
T PF09730_consen 372 KAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERI-------SELEKELRALSKLAGESQGSLNS 444 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-------HHHHHHHHHHHHHHHhHHHHHHH
Confidence 33344444444455555666667777777777777776655555544444 44445566666666666677666
Q ss_pred hhhhhhhHhHHHHHHHHHHHhhccCCCccc
Q 021664 207 IEGKQDITTLGVKKLCDRARELENGRPTEL 236 (309)
Q Consensus 207 ie~kQd~Tn~GV~~LC~f~~~~~~~~~~~~ 236 (309)
-..-=..--..+.-|+.++ ++-|+-.|+.
T Consensus 445 AQDELvtfSEeLAqLYHHV-C~cNgeTPnR 473 (717)
T PF09730_consen 445 AQDELVTFSEELAQLYHHV-CMCNGETPNR 473 (717)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHccCCCCcc
Confidence 5555444455666666666 5555555554
No 61
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=81.74 E-value=11 Score=27.11 Aligned_cols=52 Identities=15% Similarity=0.236 Sum_probs=27.9
Q ss_pred HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHH
Q 021664 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (309)
Q Consensus 153 qRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki 204 (309)
+.|+.+..++.+.+++...|.++|.+=..-|.+|..+++....-+..=-.+|
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l 55 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKL 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666665555555555555554444444333333
No 62
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=81.66 E-value=6.5 Score=31.56 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=13.2
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 021664 123 RRSLSDACNSVARQLEDVYSSISAAQRQ 150 (309)
Q Consensus 123 KRnms~Av~sv~KqLeqVs~sL~~aKrh 150 (309)
++-|.++|.++-.+|+.+..++..+.++
T Consensus 41 ~~eL~~~l~~ie~~L~DL~~aV~ive~n 68 (97)
T PF09177_consen 41 KRELRNALQSIEWDLEDLEEAVRIVEKN 68 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444444444444444444444444443
No 63
>PRK11166 chemotaxis regulator CheZ; Provisional
Probab=81.63 E-value=21 Score=33.58 Aligned_cols=114 Identities=20% Similarity=0.235 Sum_probs=68.7
Q ss_pred hhHHHHHHHHH--HhHHHHHHHHHHHHHHHHHhHhh-------hhhhHHHHHHHHHHHHHHHHHhhhchhhhhhh---HH
Q 021664 124 RSLSDACNSVA--RQLEDVYSSISAAQRQLSSKITS-------VDRDVNKIVEISQATQEEVTILRGRSKLIGDE---FQ 191 (309)
Q Consensus 124 Rnms~Av~sv~--KqLeqVs~sL~~aKrhLsqRI~~-------vD~klde~~eis~~i~~eV~~v~~dl~~ig~D---v~ 191 (309)
|.|-+|...++ +.|++..+.|-.||..|.-=|+- +=+-+|.+..++..+.++...++....++-.. .+
T Consensus 26 R~LHdsl~~lg~d~~l~~a~~~iPDArdRL~YVi~~TEqAA~rtLnaVE~a~p~~d~l~~~a~~L~~~w~~l~~~~~~~~ 105 (214)
T PRK11166 26 RMLRDSLRELGLDQAIEEAAEAIPDARDRLDYVAQMTEQAAERVLNAVEAAQPHQDQLEKEAKALDARWDEWFANPIELA 105 (214)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 56778877765 77888888888888877644432 22334444445555555555555544332221 44
Q ss_pred HHHHHHHHHHHHHHHhh-----------------hhhhhHhHHHHHHHHHHHhhccCCCccce
Q 021664 192 SVRDIVQTLESKLIEIE-----------------GKQDITTLGVKKLCDRARELENGRPTELV 237 (309)
Q Consensus 192 ~v~~~V~~Le~Ki~~ie-----------------~kQd~Tn~GV~~LC~f~~~~~~~~~~~~~ 237 (309)
.++.++......|.++. .=||.|-+=|....+.++.+|..-..-++
T Consensus 106 e~~~L~~~~~~fL~~v~~~t~~~~~~L~eI~mAqdFQDLTGQvI~kVi~~v~~vE~~L~~ll~ 168 (214)
T PRK11166 106 DARELVTDTRAFLADVPEHTSFTNAQLLEIMMAQDFQDLTGQVIKRMMDVIQEIERQLLMVLL 168 (214)
T ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHccchHhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555544444444333 33888998888888888877766544443
No 64
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=81.51 E-value=28 Score=31.79 Aligned_cols=47 Identities=9% Similarity=0.186 Sum_probs=35.0
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHH
Q 021664 145 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 191 (309)
Q Consensus 145 ~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~ 191 (309)
.....++..|++.+..+++++++-.+..++++.+.+..+..-..++.
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888888888888888888888888777777776665
No 65
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=81.45 E-value=6.2 Score=35.34 Aligned_cols=96 Identities=19% Similarity=0.348 Sum_probs=46.0
Q ss_pred CcCcchhhhhhhHHH---HHHHHHHhHHHHHHHHHHHHHHHHH---hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhh
Q 021664 114 KLPDMMFATRRSLSD---ACNSVARQLEDVYSSISAAQRQLSS---KITSVDRDVNKIVEISQATQEEVTILRGRSKLIG 187 (309)
Q Consensus 114 s~SDlMfVTKRnms~---Av~sv~KqLeqVs~sL~~aKrhLsq---RI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig 187 (309)
++.+..+..+.-|+. .+..+..+|-...+.+..-++.+.. +|..+...+....+=.+...+++.+....++.+.
T Consensus 71 ~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~ 150 (194)
T PF08614_consen 71 SLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQ 150 (194)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777766664 4667778888888888777766654 5666666666666666677778888888999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhh
Q 021664 188 DEFQSVRDIVQTLESKLIEIEG 209 (309)
Q Consensus 188 ~Dv~~v~~~V~~Le~Ki~~ie~ 209 (309)
+++..++--...+|.|+..++.
T Consensus 151 DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 151 DELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999874
No 66
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=81.05 E-value=24 Score=38.33 Aligned_cols=76 Identities=17% Similarity=0.299 Sum_probs=51.5
Q ss_pred HHHHHHHHHHh-HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHH
Q 021664 126 LSDACNSVARQ-LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (309)
Q Consensus 126 ms~Av~sv~Kq-LeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki 204 (309)
+..|+..+-.+ ++ -...|+.++..|+..+-...++|.+-.+.++++...++..-+.+.+-++.+.+.=+.|..|+
T Consensus 541 L~~a~~vlreeYi~----~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~ 616 (717)
T PF10168_consen 541 LSQATKVLREEYIE----KQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRV 616 (717)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666654 33 34578999999999999999998888888888876655555555555555555555555554
Q ss_pred H
Q 021664 205 I 205 (309)
Q Consensus 205 ~ 205 (309)
+
T Consensus 617 ~ 617 (717)
T PF10168_consen 617 D 617 (717)
T ss_pred H
Confidence 4
No 67
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=80.75 E-value=7 Score=30.01 Aligned_cols=52 Identities=15% Similarity=0.244 Sum_probs=35.0
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021664 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (309)
Q Consensus 151 LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (309)
+..||+.|..|+--+.+..+...+.|+.-+.. |+.++..+..|..||..++.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~-------I~~L~~~l~~L~~rl~~~~~ 53 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQ-------IDRLQRQLRLLRERLRELED 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcc
Confidence 56788888888888888888888888766665 56666666666677777663
No 68
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=80.40 E-value=39 Score=29.47 Aligned_cols=73 Identities=16% Similarity=0.254 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHH
Q 021664 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIV 197 (309)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V 197 (309)
++++-++.++....++-+.++..=.+....++.....+++..+....+.+.+.++..-+..+..-++.+...+
T Consensus 137 ~la~~t~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~i~~~~ 209 (262)
T smart00283 137 KLAERSAESAKEIESLIKEIQEETNEAVAAMEESSSEVEEGVELVEETGEALEEIVDSVEEIADLVQEIAAAT 209 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333344444444444444444444444444444444444444444433333
No 69
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=80.38 E-value=20 Score=32.10 Aligned_cols=88 Identities=10% Similarity=0.198 Sum_probs=50.6
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhh----hchhhhhhhHHHHHHH
Q 021664 122 TRRSLSDACNSVARQLEDVYSSI-SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR----GRSKLIGDEFQSVRDI 196 (309)
Q Consensus 122 TKRnms~Av~sv~KqLeqVs~sL-~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~----~dl~~ig~Dv~~v~~~ 196 (309)
|-.++-+-++.....-+.+.+.+ ..+|..|.++|..|-+.+.+..+-.+.+.+++...+ .|...+..|+..++.+
T Consensus 78 ~~~~I~~Y~~~f~syY~~L~~~id~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~ 157 (184)
T PF05791_consen 78 LNQDIINYNTTFQSYYDTLVEAIDQKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSI 157 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45555555544444444444443 457888889998887776666655555555554433 3555666666666666
Q ss_pred HHHHHHHHHHhhh
Q 021664 197 VQTLESKLIEIEG 209 (309)
Q Consensus 197 V~~Le~Ki~~ie~ 209 (309)
+.+-.+.|..++.
T Consensus 158 l~~~~g~I~~L~~ 170 (184)
T PF05791_consen 158 LAGENGDIPQLQK 170 (184)
T ss_dssp HHHTT--HHHHHH
T ss_pred HhcccCCHHHHHH
Confidence 6666665555554
No 70
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=80.00 E-value=40 Score=29.36 Aligned_cols=90 Identities=20% Similarity=0.233 Sum_probs=53.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHh
Q 021664 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (309)
Q Consensus 128 ~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (309)
+++..=-|+|++=...+..-=+.|+.|++.+...+|+..+--...++.+.+.... ....++++.-|..||..++..
T Consensus 17 e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~----~~~~E~l~rriq~LEeele~a 92 (143)
T PF12718_consen 17 EELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKR----KSNAEQLNRRIQLLEEELEEA 92 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHhHHHHHhhHHHHHHHHHHH
Confidence 4455555666666666666666677777777777776666555555554433222 223346666677777776666
Q ss_pred hhhhhhHhHHHHHH
Q 021664 208 EGKQDITTLGVKKL 221 (309)
Q Consensus 208 e~kQd~Tn~GV~~L 221 (309)
+.+=.-|+.-+...
T Consensus 93 e~~L~e~~ekl~e~ 106 (143)
T PF12718_consen 93 EKKLKETTEKLREA 106 (143)
T ss_pred HHHHHHHHHHHHHH
Confidence 66655555544433
No 71
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=79.82 E-value=16 Score=30.79 Aligned_cols=64 Identities=16% Similarity=0.240 Sum_probs=40.8
Q ss_pred HHHHHHHHhHhhhhhhHH-HHHHHHHHHHHHHHHhhhchh-hhhhhHHHHHHHHHHHHHHHHHhhh
Q 021664 146 AAQRQLSSKITSVDRDVN-KIVEISQATQEEVTILRGRSK-LIGDEFQSVRDIVQTLESKLIEIEG 209 (309)
Q Consensus 146 ~aKrhLsqRI~~vD~kld-e~~eis~~i~~eV~~v~~dl~-~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (309)
..+.++..+++.+-++-+ ...++.+.+.+.|..+-.++. --..||+.++.-|..||.+|..++.
T Consensus 52 ~~~e~~~~~~~~~~~~~~~~~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~~ 117 (118)
T TIGR01837 52 AAREEVKTALEQTRDQVQRNWDKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQVEELRR 117 (118)
T ss_pred HHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444444444433332 234666777777766655543 2348999999999999999988764
No 72
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=79.79 E-value=14 Score=32.10 Aligned_cols=25 Identities=8% Similarity=0.294 Sum_probs=20.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhh
Q 021664 187 GDEFQSVRDIVQTLESKLIEIEGKQ 211 (309)
Q Consensus 187 g~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (309)
..||+.++.-|..|+.+|.++..++
T Consensus 108 ~~dv~~L~~rId~L~~~v~~l~~~k 132 (132)
T PF05597_consen 108 RKDVEALSARIDQLTAQVERLANKK 132 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5788999988888988888887653
No 73
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=79.79 E-value=4.7 Score=32.77 Aligned_cols=38 Identities=13% Similarity=0.294 Sum_probs=26.6
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhh
Q 021664 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL 185 (309)
Q Consensus 148 KrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ 185 (309)
.++|..|++.++..+++..+....+++++..++..+.+
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 89 IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777777777777777777777777666655443
No 74
>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]
Probab=79.57 E-value=5.2 Score=39.49 Aligned_cols=71 Identities=15% Similarity=0.217 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHH
Q 021664 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI 196 (309)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~ 196 (309)
+.++.|..+-++||.|+.=.-+--..|..|++.|..+.|+ -..-.--+++..++++++..++.|+..+-.-
T Consensus 45 ~e~dFv~~Ld~ELEKv~~F~lek~~el~~Rl~~L~e~~~~-~~~~~~~~~~~~~lr~~l~~~~~em~~L~~f 115 (310)
T KOG1161|consen 45 DESDFVRLLDAELEKVNGFQLEKESELIIRLKELEEKIDA-LSLEPPSAEEMKELREELVDFHGEMVLLENF 115 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999985 2222233445677777777777777666543
No 75
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=79.48 E-value=26 Score=36.03 Aligned_cols=91 Identities=13% Similarity=0.158 Sum_probs=71.6
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHH
Q 021664 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLS-------SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (309)
Q Consensus 122 TKRnms~Av~sv~KqLeqVs~sL~~aKrhLs-------qRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~ 194 (309)
-|+-+-++.+..-++|..|...+++.|++|. .+.+.++..+.|.+..-+++..+...-+..++..+-+=..+.
T Consensus 158 ~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~ 237 (420)
T COG4942 158 ARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLK 237 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4677788888888999999999999998887 567788888888888888888888888888777777777777
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 021664 195 DIVQTLESKLIEIEGKQD 212 (309)
Q Consensus 195 ~~V~~Le~Ki~~ie~kQd 212 (309)
+.+..+|.-+.+..++-.
T Consensus 238 ~~Ias~e~~aA~~re~~a 255 (420)
T COG4942 238 NEIASAEAAAAKAREAAA 255 (420)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777766665544433
No 76
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=79.34 E-value=4.9 Score=33.28 Aligned_cols=42 Identities=14% Similarity=0.259 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhh
Q 021664 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL 185 (309)
Q Consensus 144 L~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ 185 (309)
+..|++.+..||+.+...+++..+....++++++.+...+.+
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~ 126 (129)
T cd00584 85 LEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQE 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345568888888888888888888888888887777665543
No 77
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=79.26 E-value=22 Score=37.68 Aligned_cols=77 Identities=16% Similarity=0.256 Sum_probs=38.8
Q ss_pred Ccchhhhhhh--HHHHHHHHHHh---HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhH
Q 021664 116 PDMMFATRRS--LSDACNSVARQ---LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEF 190 (309)
Q Consensus 116 SDlMfVTKRn--ms~Av~sv~Kq---LeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv 190 (309)
+||+.||-|. |.+-+..+-|. |.+.-..|......|..|++.+...|....+-....+.+..++....+....+.
T Consensus 129 ~DmLvV~~ka~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~ 208 (546)
T PF07888_consen 129 SDMLVVTTKAQLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEER 208 (546)
T ss_pred cceEEEehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888888665 33333333333 333344455555556666666666665555444444444333333333333333
Q ss_pred HH
Q 021664 191 QS 192 (309)
Q Consensus 191 ~~ 192 (309)
+.
T Consensus 209 ~~ 210 (546)
T PF07888_consen 209 ES 210 (546)
T ss_pred HH
Confidence 33
No 78
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=79.23 E-value=28 Score=33.74 Aligned_cols=47 Identities=13% Similarity=0.219 Sum_probs=26.6
Q ss_pred cchhhhhhhHHHHHHHHHHhHHHHHHHHHHH---HHHHHHhHhhhhhhHH
Q 021664 117 DMMFATRRSLSDACNSVARQLEDVYSSISAA---QRQLSSKITSVDRDVN 163 (309)
Q Consensus 117 DlMfVTKRnms~Av~sv~KqLeqVs~sL~~a---KrhLsqRI~~vD~kld 163 (309)
+-|--....|.+-.+.+.++++.+.+.+... +..|..+|.++....+
T Consensus 152 ~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~ 201 (325)
T PF08317_consen 152 EGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVE 201 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555666666677777766666554443 3445555555554433
No 79
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=79.16 E-value=19 Score=30.86 Aligned_cols=64 Identities=17% Similarity=0.251 Sum_probs=52.7
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhh
Q 021664 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL 185 (309)
Q Consensus 121 VTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ 185 (309)
.+|..+++=+-.+++..|.+.+... .-.+|...++.+..+.+..-++-+.-.++|.+++.|+..
T Consensus 44 ~~r~~l~~Eiv~l~~~~e~~~~~~~-~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~D 107 (120)
T PF12325_consen 44 AERDELREEIVKLMEENEELRALKK-EVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQD 107 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 4788888888888888888855444 445899999999999999999999999999888887543
No 80
>PRK14011 prefoldin subunit alpha; Provisional
Probab=78.66 E-value=4.7 Score=35.44 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 021664 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR 182 (309)
Q Consensus 143 sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~d 182 (309)
.+..|+++|..||+.|++.+++..+..+.+.+++.+++..
T Consensus 85 ~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~ 124 (144)
T PRK14011 85 DVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKE 124 (144)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999888888888666654
No 81
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=78.58 E-value=1.2 Score=44.13 Aligned_cols=56 Identities=20% Similarity=0.346 Sum_probs=17.1
Q ss_pred HHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHH--HHHHHHHHHhhccCC
Q 021664 175 EVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLG--VKKLCDRARELENGR 232 (309)
Q Consensus 175 eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~G--V~~LC~f~~~~~~~~ 232 (309)
+|+.+..++...+..+..++..|.+++.-|.-+.. |++..| |-.|-+-+..+|.+.
T Consensus 99 sVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLks--dVSt~aL~ItdLe~RV~~LEs~~ 156 (326)
T PF04582_consen 99 SVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKS--DVSTQALNITDLESRVKALESGS 156 (326)
T ss_dssp -------------------HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhh--hhhhhcchHhhHHHHHHHHhcCC
Confidence 33444444444444444444445555555444433 223333 344555555555543
No 82
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=78.28 E-value=29 Score=31.65 Aligned_cols=89 Identities=21% Similarity=0.359 Sum_probs=51.1
Q ss_pred ecccCcCcchhhhhhhHHHHHHHHHHhHHHHHHHHH-HHHHHHHHhHhhhhhhHHHHHHHHHHHHHH-HHHhh-hchhhh
Q 021664 110 WKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSIS-AAQRQLSSKITSVDRDVNKIVEISQATQEE-VTILR-GRSKLI 186 (309)
Q Consensus 110 WKGws~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~-~aKrhLsqRI~~vD~klde~~eis~~i~~e-V~~v~-~dl~~i 186 (309)
||+| +.+| .+|++-+|++++.+...- -.+.-++.-++.+...+.+...-...+-.+ |..++ .+...+
T Consensus 14 w~~~---------~~sl-s~~~~~~kqve~~~l~~lkqqqd~itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~l 83 (165)
T PF09602_consen 14 WKQW---------SQSL-SLFASFMKQVEQQTLKKLKQQQDWITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGNSL 83 (165)
T ss_pred HHHH---------HHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888 3444 468889999998775543 334556666777766666665555555444 55552 233334
Q ss_pred hhhHHHHHHHHHHHHHHHHHhh
Q 021664 187 GDEFQSVRDIVQTLESKLIEIE 208 (309)
Q Consensus 187 g~Dv~~v~~~V~~Le~Ki~~ie 208 (309)
++-+.....-+..|..||..+-
T Consensus 84 ~d~inE~t~k~~El~~~i~el~ 105 (165)
T PF09602_consen 84 NDSINEWTDKLNELSAKIQELL 105 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555555554433
No 83
>PRK04863 mukB cell division protein MukB; Provisional
Probab=78.03 E-value=39 Score=39.70 Aligned_cols=83 Identities=16% Similarity=0.156 Sum_probs=41.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHh---------HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHH
Q 021664 128 DACNSVARQLEDVYSSISAAQRQLSSK---------ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 198 (309)
Q Consensus 128 ~Av~sv~KqLeqVs~sL~~aKrhLsqR---------I~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~ 198 (309)
+-.+.+.++++.+......+++++... +......+++..+-.+...+++.+.+..+..+..+++.+..-+.
T Consensus 314 diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLe 393 (1486)
T PRK04863 314 RELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVD 393 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777766532 22233333333333333344444444444444444444444444
Q ss_pred HHHHHHHHhhhh
Q 021664 199 TLESKLIEIEGK 210 (309)
Q Consensus 199 ~Le~Ki~~ie~k 210 (309)
.|..++...+..
T Consensus 394 eLqeqLaelqqe 405 (1486)
T PRK04863 394 ELKSQLADYQQA 405 (1486)
T ss_pred HHHHHHHHHHHH
Confidence 444444443333
No 84
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=77.94 E-value=22 Score=35.57 Aligned_cols=100 Identities=17% Similarity=0.338 Sum_probs=72.5
Q ss_pred cccCc-CcchhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhh
Q 021664 111 KGWKL-PDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE 189 (309)
Q Consensus 111 KGws~-SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~D 189 (309)
|-|.+ -|=|---|+|...++..++-+|+.++..+..+=..+..|=-.+...|.-...-=+...++..++|..-.+...+
T Consensus 223 kDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~g 302 (384)
T KOG0972|consen 223 KDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVG 302 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44543 36688889999999999999999999999988888888877777777766666666666777777666666666
Q ss_pred HHH----HHHHHHHHHHHHHHhhhh
Q 021664 190 FQS----VRDIVQTLESKLIEIEGK 210 (309)
Q Consensus 190 v~~----v~~~V~~Le~Ki~~ie~k 210 (309)
|.+ +.+++..+|-+=.+||.+
T Consensus 303 v~~rT~~L~eVm~e~E~~KqemEe~ 327 (384)
T KOG0972|consen 303 VSSRTETLDEVMDEIEQLKQEMEEQ 327 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 543 444555555555555543
No 85
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=77.90 E-value=30 Score=32.21 Aligned_cols=81 Identities=12% Similarity=0.261 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHH
Q 021664 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (309)
Q Consensus 126 ms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~ 205 (309)
+....+.++++|......+..+| .+++.++..++....=.+..+++++.+..+...+..+.+..+.-...|+..|.
T Consensus 22 l~~~~e~~~~~L~~~~~~~~~~~----~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~ 97 (264)
T PF06008_consen 22 LLSSIEDLTNQLRSYRSKLNPQK----QQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQ 97 (264)
T ss_pred HHHHHHHHHHHHHHHhccchhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666655555555443 24445555555555555555555556666656666666666655555555555
Q ss_pred Hhhhh
Q 021664 206 EIEGK 210 (309)
Q Consensus 206 ~ie~k 210 (309)
.+..+
T Consensus 98 ~l~~~ 102 (264)
T PF06008_consen 98 NLQDN 102 (264)
T ss_pred HHHHH
Confidence 55444
No 86
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=77.77 E-value=49 Score=37.41 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=10.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021664 183 SKLIGDEFQSVRDIVQTLESKLIEIEG 209 (309)
Q Consensus 183 l~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (309)
+.....++...+.....|+..|..++.
T Consensus 872 ~~~l~~~l~~~~~~~~~l~~~l~~~~~ 898 (1163)
T COG1196 872 KEELEDELKELEEEKEELEEELRELES 898 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 87
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=77.69 E-value=47 Score=37.56 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHH
Q 021664 168 ISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVK 219 (309)
Q Consensus 168 is~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~ 219 (309)
-....++++..+...+.....+...+..-...++.++..++..-.....-+.
T Consensus 864 ~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 915 (1163)
T COG1196 864 ELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLE 915 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555555555555555555555544444333333333
No 88
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=77.55 E-value=63 Score=30.27 Aligned_cols=38 Identities=34% Similarity=0.433 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhh---HhHHHHHHHHHHHh
Q 021664 190 FQSVRDIVQTLESKLIEIEGKQDI---TTLGVKKLCDRARE 227 (309)
Q Consensus 190 v~~v~~~V~~Le~Ki~~ie~kQd~---Tn~GV~~LC~f~~~ 227 (309)
...+++=|..-..||.++|.+|+- .|.=+.-||-+..+
T Consensus 103 a~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKElcl~LDe 143 (195)
T PF10226_consen 103 ASVMRQEVAQYQQKLKELEDKQEELIRENLELKELCLYLDE 143 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 445666688888899999988864 57788899988855
No 89
>PRK00846 hypothetical protein; Provisional
Probab=77.44 E-value=16 Score=29.28 Aligned_cols=55 Identities=9% Similarity=0.120 Sum_probs=40.4
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021664 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (309)
Q Consensus 148 KrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (309)
...+.+||+.|..++--|....+...+.|+.-+.. ++.++..+.-|-.|+..++.
T Consensus 8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~-------I~~L~~ql~~L~~rL~~~~~ 62 (77)
T PRK00846 8 DQALEARLVELETRLSFQEQALTELSEALADARLT-------GARNAELIRHLLEDLGKVRS 62 (77)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcc
Confidence 45688999999999999988888888888776655 45555555555566666653
No 90
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=77.38 E-value=5.8 Score=32.05 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh
Q 021664 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (309)
Q Consensus 144 L~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~ 184 (309)
+..|++.|..||+.+.+++++..+-.+.+++++..++..++
T Consensus 75 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~ 115 (120)
T PF02996_consen 75 LEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQ 115 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777777777777766666666666655554443
No 91
>PRK09793 methyl-accepting protein IV; Provisional
Probab=77.34 E-value=66 Score=32.71 Aligned_cols=33 Identities=6% Similarity=0.063 Sum_probs=12.7
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 021664 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGR 182 (309)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~~eV~~v~~d 182 (309)
++..-.+.+....++|.+-.+++.+.+.++...
T Consensus 279 eia~~~~~ls~~~e~qa~~~~~~~~s~~~~~~~ 311 (533)
T PRK09793 279 EIVAGNNDLSSRTEQQAASLAQTAASMEQLTAT 311 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444443333333333333333
No 92
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=77.20 E-value=11 Score=30.17 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=8.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHh
Q 021664 186 IGDEFQSVRDIVQTLESKLIEI 207 (309)
Q Consensus 186 ig~Dv~~v~~~V~~Le~Ki~~i 207 (309)
+..-++.+-..+..|+.|+..|
T Consensus 40 l~~klDa~~~~l~~l~~~V~~I 61 (75)
T PF05531_consen 40 LNKKLDAQSAQLTTLNTKVNEI 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444443333
No 93
>PRK09793 methyl-accepting protein IV; Provisional
Probab=77.08 E-value=67 Score=32.65 Aligned_cols=6 Identities=33% Similarity=0.329 Sum_probs=2.3
Q ss_pred CCCCCC
Q 021664 259 RSGSLH 264 (309)
Q Consensus 259 r~~slp 264 (309)
|+.+.|
T Consensus 520 ~~~~~~ 525 (533)
T PRK09793 520 RHESAQ 525 (533)
T ss_pred hhhccc
Confidence 333333
No 94
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=76.87 E-value=10 Score=29.00 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=16.5
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHH
Q 021664 121 ATRRSLSDACNSVARQLEDVYSSISA 146 (309)
Q Consensus 121 VTKRnms~Av~sv~KqLeqVs~sL~~ 146 (309)
-||+.+.+.+..+..++++.++....
T Consensus 26 e~R~~l~~~~~~~~~~~~~~~~~~~~ 51 (74)
T PF12732_consen 26 ETREKLKDKAEDLKDKAKDLYEEAKE 51 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777777776666655554444
No 95
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=76.81 E-value=25 Score=27.35 Aligned_cols=66 Identities=14% Similarity=0.114 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021664 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (309)
Q Consensus 143 sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (309)
.|.+.+.-|..|+|.++.|+.......+.+..|=..+-.-+..-..++..++.-+..|...+++..
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467788889999999999999999999998888777777777777778888887888777766543
No 96
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=76.67 E-value=12 Score=35.57 Aligned_cols=56 Identities=9% Similarity=0.240 Sum_probs=33.1
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021664 154 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (309)
Q Consensus 154 RI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (309)
+|+.+|.+++......+.+++++..++..++.+..++..++..+..|+..+..++.
T Consensus 11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ 66 (239)
T COG1579 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLES 66 (239)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666655555555555554443
No 97
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=76.63 E-value=9.9 Score=30.48 Aligned_cols=44 Identities=20% Similarity=0.361 Sum_probs=28.7
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHH
Q 021664 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT 199 (309)
Q Consensus 149 rhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~ 199 (309)
|.+-.||++|. +|-++|+..|++=-.++++ -|+|+..++++|.-
T Consensus 7 r~~ieRiErLE---eEk~~i~~dikdVyaEAK~----~GfD~K~lr~ii~l 50 (74)
T PF10073_consen 7 RQFIERIERLE---EEKKAISDDIKDVYAEAKG----NGFDTKALRQIIRL 50 (74)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh----CCCCHHHHHHHHHH
Confidence 34444555554 5555666666665555555 59999999999864
No 98
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=76.55 E-value=15 Score=36.78 Aligned_cols=27 Identities=15% Similarity=0.302 Sum_probs=19.0
Q ss_pred cCcchhhhhhhHHHHHHHHHHhHHHHH
Q 021664 115 LPDMMFATRRSLSDACNSVARQLEDVY 141 (309)
Q Consensus 115 ~SDlMfVTKRnms~Av~sv~KqLeqVs 141 (309)
+...+-.||.-|..--+.+++.||.+.
T Consensus 232 I~~~~~~~~~~L~kl~~~i~~~lekI~ 258 (359)
T PF10498_consen 232 IESALPETKSQLDKLQQDISKTLEKIE 258 (359)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456667778777777777777776554
No 99
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.40 E-value=16 Score=29.95 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=27.1
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHH
Q 021664 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT 199 (309)
Q Consensus 149 rhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~ 199 (309)
|.+..||++|. +|-+.|...|+ ++=.+.+--|+|++.++.+++-
T Consensus 17 rafIerIERlE---eEk~~i~~dik----dvy~eakg~GFDvKa~r~iirl 60 (85)
T COG3750 17 RAFIERIERLE---EEKKTIADDIK----DVYAEAKGHGFDVKAVRTIIRL 60 (85)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHH----HHHHHHHcCCccHHHHHHHHHH
Confidence 34445555554 44555555554 4445555669999999988753
No 100
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=76.14 E-value=11 Score=33.16 Aligned_cols=55 Identities=9% Similarity=0.172 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHH-HhhhchhhhhhhHHH
Q 021664 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT-ILRGRSKLIGDEFQS 192 (309)
Q Consensus 138 eqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~-~v~~dl~~ig~Dv~~ 192 (309)
+.|.+.+..+-+.|..-|+....++.+-.++++.=-+.|. -+|+|++.+...++.
T Consensus 3 ~~l~e~~~~~~~~L~~~le~a~e~~~~~~elT~eEl~lv~~ylkRDl~~~a~~~~~ 58 (146)
T PF07295_consen 3 ESLEEALEHSEEELQEALEKAKEYLVAAGELTREELALVSAYLKRDLEEFARYYEE 58 (146)
T ss_pred hHHHHHHhcCHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666665555555555554444443333332 356677777666665
No 101
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=74.65 E-value=41 Score=38.21 Aligned_cols=94 Identities=20% Similarity=0.356 Sum_probs=66.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021664 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (309)
Q Consensus 130 v~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (309)
....-++|.++...+..+...+.+++..+..++++..+-.+...++..+.+.+ +..+...++.-+..++.+|+.++.
T Consensus 258 l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~---~~~~~~~~~~~l~~~~~~L~~i~~ 334 (1201)
T PF12128_consen 258 LQALEQQLCHLHAELNADEQQLEQEQPELKEELNELNEELEKLEDEIKELRDE---LNKELSALNADLARIKSELDEIEQ 334 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777778888888888888888888888877777777766655543 455666666677777788888876
Q ss_pred h-hhhHhHHHHHHHHHHH
Q 021664 210 K-QDITTLGVKKLCDRAR 226 (309)
Q Consensus 210 k-Qd~Tn~GV~~LC~f~~ 226 (309)
+ ..|-..||..+++-+.
T Consensus 335 ~~~~ye~~~i~~~~~~~~ 352 (1201)
T PF12128_consen 335 QKKDYEDADIEQLIARVD 352 (1201)
T ss_pred HHHHHHHCCHHHHHHHHH
Confidence 5 5666777777766544
No 102
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=74.41 E-value=35 Score=37.55 Aligned_cols=49 Identities=6% Similarity=0.038 Sum_probs=30.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHhhccC
Q 021664 183 SKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENG 231 (309)
Q Consensus 183 l~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~~~~~ 231 (309)
+.+-..++..+.+.+..+..++.++....+-...+...|-+|...+.+.
T Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (910)
T TIGR00833 602 VASALSQVSGLPNALDGIGTQLAQMRESAAGVQDLLNELSDYSMTMGKL 650 (910)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444455566666777777777777766555556666666666655543
No 103
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=74.31 E-value=72 Score=30.90 Aligned_cols=30 Identities=17% Similarity=0.278 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHH
Q 021664 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIV 166 (309)
Q Consensus 137 LeqVs~sL~~aKrhLsqRI~~vD~klde~~ 166 (309)
|+.-.+.|..-++.|...++.++.-+.+..
T Consensus 154 L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~ 183 (325)
T PF08317_consen 154 LEENLELLQEDYAKLDKQLEQLDELLPKLR 183 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444333333
No 104
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=74.19 E-value=61 Score=28.48 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=16.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 021664 183 SKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (309)
Q Consensus 183 l~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (309)
...+...++..++.+...-.||...+.+.
T Consensus 140 ~~~~~~~~~~~~~~l~~~lekL~~fd~~~ 168 (204)
T PF04740_consen 140 SSSFIDSLEKAKKKLQETLEKLRAFDQQS 168 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555555666655543
No 105
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=73.80 E-value=27 Score=35.81 Aligned_cols=86 Identities=14% Similarity=0.246 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHH------------hhhchhhhhhhHHHHHHHHH--------HH
Q 021664 141 YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI------------LRGRSKLIGDEFQSVRDIVQ--------TL 200 (309)
Q Consensus 141 s~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~------------v~~dl~~ig~Dv~~v~~~V~--------~L 200 (309)
..-+..-|++|..+-++|-.++|+.+.+.+.+++||.. +..+++....|++.++.-+. .|
T Consensus 201 R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiW 280 (424)
T PF03915_consen 201 RAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIW 280 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 34566778888888888888888888888888888643 33444444444444444432 35
Q ss_pred HHHHHHhhhhhhhHhHHHHHHHHHHH
Q 021664 201 ESKLIEIEGKQDITTLGVKKLCDRAR 226 (309)
Q Consensus 201 e~Ki~~ie~kQd~Tn~GV~~LC~f~~ 226 (309)
|.-|+.|..-|+|=+.=-..+-+.-+
T Consensus 281 E~EL~~V~eEQqfL~~QedL~~DL~e 306 (424)
T PF03915_consen 281 ESELQKVCEEQQFLKLQEDLLSDLKE 306 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777778877776554444433
No 106
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=73.76 E-value=64 Score=29.98 Aligned_cols=69 Identities=13% Similarity=0.220 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHH
Q 021664 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (309)
Q Consensus 137 LeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~ 205 (309)
+..+.+.++.....+.+-|++++.=++...+-.+.+.+=+..+..-++.+...-+.++.++..+..-+.
T Consensus 176 l~~l~~~l~~~~~~i~~ll~~l~~l~~~l~~~~~~l~~~v~~l~~~~~~l~~~~~~l~~~l~~l~~~~~ 244 (291)
T TIGR00996 176 LAQLTAALNARDGDIGALIDNLNRVLDVLADRSDQLDRLLDNLATLTAQLADRDDALDDALAALSGASA 244 (291)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 334444444444444444444333333333333333333333333333333333444444444444433
No 107
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=73.72 E-value=16 Score=29.35 Aligned_cols=61 Identities=16% Similarity=0.296 Sum_probs=26.7
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021664 145 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (309)
Q Consensus 145 ~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (309)
...+|.+..+++.+-.+ .++++++|..--.. +.+.+.+..++..+..-+..||.++..++.
T Consensus 35 d~~~r~l~~~~e~lr~~---rN~~sk~I~~~~~~-~~~~~~l~~e~~~lk~~i~~le~~~~~~e~ 95 (108)
T PF02403_consen 35 DQERRELQQELEELRAE---RNELSKEIGKLKKA-GEDAEELKAEVKELKEEIKELEEQLKELEE 95 (108)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHCHT-TCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HhHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444 34444444332211 134444444444444444444444444443
No 108
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=73.58 E-value=87 Score=32.15 Aligned_cols=12 Identities=17% Similarity=0.379 Sum_probs=5.1
Q ss_pred HHHHHHHHHHhH
Q 021664 126 LSDACNSVARQL 137 (309)
Q Consensus 126 ms~Av~sv~KqL 137 (309)
|.++++.+-..|
T Consensus 252 La~s~n~m~~~L 263 (554)
T PRK15041 252 LAESLRHMQGEL 263 (554)
T ss_pred HHHHHHHHHHHH
Confidence 444444443333
No 109
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=73.52 E-value=8.5 Score=32.44 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=21.8
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 021664 145 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR 182 (309)
Q Consensus 145 ~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~d 182 (309)
..|++.|..|++.++..+++..+....+++++..++..
T Consensus 93 ~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~ 130 (140)
T PRK03947 93 DEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQE 130 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666655555555555444433
No 110
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=73.17 E-value=62 Score=28.75 Aligned_cols=80 Identities=13% Similarity=0.335 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH--------HHHHHHHHHHHHhhhchhhhhhhHHHHHHHH
Q 021664 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV--------EISQATQEEVTILRGRSKLIGDEFQSVRDIV 197 (309)
Q Consensus 126 ms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~--------eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V 197 (309)
+++..+.+-.|.-++...|+..+.-+..|+..++.++.... +......+.+..++ +.++.|+..++..+
T Consensus 18 LtnvLnaIr~qn~~i~aql~~~~d~i~~~L~~l~~~l~~ll~~l~~~l~~l~~~L~~aln~Lq---~~~rneLtnlnsil 94 (140)
T PF04513_consen 18 LTNVLNAIRLQNVQIAAQLTTILDAIQTQLNALSTDLTNLLADLDTRLDTLLTNLNDALNQLQ---DTLRNELTNLNSIL 94 (140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 45556666566666666666666655555555555554411 23333444443333 34445666666666
Q ss_pred HHHHHHHHHhh
Q 021664 198 QTLESKLIEIE 208 (309)
Q Consensus 198 ~~Le~Ki~~ie 208 (309)
..|-..+--|.
T Consensus 95 ~nL~ssvTNin 105 (140)
T PF04513_consen 95 NNLTSSVTNIN 105 (140)
T ss_pred HHHHHHHhhHH
Confidence 66655555544
No 111
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=72.94 E-value=55 Score=32.28 Aligned_cols=48 Identities=15% Similarity=0.284 Sum_probs=19.1
Q ss_pred HHHhHHHHHHHHHHH-HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021664 133 VARQLEDVYSSISAA-QRQLSSKITSVDRDVNKIVEISQATQEEVTILR 180 (309)
Q Consensus 133 v~KqLeqVs~sL~~a-KrhLsqRI~~vD~klde~~eis~~i~~eV~~v~ 180 (309)
.+..||+|.+.+... --.|...|..+...+++|+...+..+++|..++
T Consensus 53 fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~ 101 (301)
T PF06120_consen 53 FADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLK 101 (301)
T ss_pred HHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455444444331 223333344444444444444444444333333
No 112
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=72.54 E-value=43 Score=34.56 Aligned_cols=62 Identities=15% Similarity=0.231 Sum_probs=53.4
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Q 021664 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (309)
Q Consensus 152 sqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (309)
..++..+-.++.+|.++-+.+++-+..-+.||+.+..||+++|+--..|..|+..-......
T Consensus 13 ~~~~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~ 74 (508)
T PF04129_consen 13 SENFADLHNQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEK 74 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 36788899999999999999999999999999999999999999988888888755444433
No 113
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=71.92 E-value=23 Score=26.89 Aligned_cols=50 Identities=20% Similarity=0.312 Sum_probs=36.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 021664 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (309)
Q Consensus 127 s~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v 179 (309)
...++++.+.|+++...-...|+ +.|..+...||+..++.+++.-||..+
T Consensus 2 ~~l~~~i~~~l~~~~~~~~~~r~---~~i~~~e~~l~ea~~~l~qMe~E~~~~ 51 (79)
T PF05008_consen 2 QALTAEIKSKLERIKNLSGEQRK---SLIREIERDLDEAEELLKQMELEVRSL 51 (79)
T ss_dssp HHHHHHHHHHHHHGGGS-CHHHH---HHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHhhccChHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35567777777777754444444 456667788999999999999998766
No 114
>PRK02119 hypothetical protein; Provisional
Probab=71.35 E-value=18 Score=28.37 Aligned_cols=38 Identities=5% Similarity=0.055 Sum_probs=28.1
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhh
Q 021664 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIG 187 (309)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig 187 (309)
.+..||+.|..|+--|........+.|++-+..+....
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~ 43 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQ 43 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888888888888888888876666643333
No 115
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=71.16 E-value=38 Score=33.93 Aligned_cols=35 Identities=11% Similarity=0.246 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHH
Q 021664 136 QLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQ 170 (309)
Q Consensus 136 qLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~ 170 (309)
.++.-.+.+.+.+..+.++|+.++.++.......+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 196 (457)
T TIGR01000 162 KSQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKN 196 (457)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555555555555555555444444
No 116
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=70.87 E-value=34 Score=41.23 Aligned_cols=81 Identities=10% Similarity=0.167 Sum_probs=67.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHh
Q 021664 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (309)
Q Consensus 128 ~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (309)
.++.-+-..+.+..+.+..+||.+.+|++.....++....-.....+--..++.+++....|++.++..+..||.|+...
T Consensus 1361 ~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f 1440 (1930)
T KOG0161|consen 1361 QWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRF 1440 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555566888999999999999999999999888888888888889999999999999999999999998866
Q ss_pred h
Q 021664 208 E 208 (309)
Q Consensus 208 e 208 (309)
+
T Consensus 1441 ~ 1441 (1930)
T KOG0161|consen 1441 E 1441 (1930)
T ss_pred H
Confidence 5
No 117
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=70.66 E-value=21 Score=37.21 Aligned_cols=61 Identities=11% Similarity=0.279 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHH
Q 021664 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 198 (309)
Q Consensus 138 eqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~ 198 (309)
..+|+.|..-=+++..+++.++.++.+..+....++++-..+|..+.++..++..+++.|+
T Consensus 371 ~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le 431 (560)
T PF06160_consen 371 QVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE 431 (560)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777888888888888888888888888888888888888888888887776654
No 118
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=70.41 E-value=27 Score=41.73 Aligned_cols=23 Identities=9% Similarity=0.320 Sum_probs=12.2
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhh
Q 021664 135 RQLEDVYSSISAAQRQLSSKITS 157 (309)
Q Consensus 135 KqLeqVs~sL~~aKrhLsqRI~~ 157 (309)
.+++++...|+.+|+||....++
T Consensus 805 ~~i~eL~~el~~lk~klq~~~~~ 827 (1822)
T KOG4674|consen 805 SRIKELERELQKLKKKLQEKSSD 827 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555554443
No 119
>PRK10698 phage shock protein PspA; Provisional
Probab=70.34 E-value=46 Score=30.88 Aligned_cols=80 Identities=10% Similarity=0.187 Sum_probs=49.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHH---------HHHHHHhhhchhhhhhhHHHHHHHHHHH
Q 021664 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQAT---------QEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (309)
Q Consensus 130 v~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i---------~~eV~~v~~dl~~ig~Dv~~v~~~V~~L 200 (309)
|..-...|+.-++....+-.+|..++..|..|+.+.+.=...+ +.+|.+.-. +.|..+--..+..+
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~-----~~~~~~a~~~f~rm 171 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLD-----SGKLDEAMARFESF 171 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCcchHHHHHHHH
Confidence 5555556666666666666677777777777777665433322 222322222 24455556677889
Q ss_pred HHHHHHhhhhhhhH
Q 021664 201 ESKLIEIEGKQDIT 214 (309)
Q Consensus 201 e~Ki~~ie~kQd~T 214 (309)
|.||+++|..-+..
T Consensus 172 E~ki~~~Ea~aea~ 185 (222)
T PRK10698 172 ERRIDQMEAEAESH 185 (222)
T ss_pred HHHHHHHHHHHhHh
Confidence 99999999887664
No 120
>PRK02224 chromosome segregation protein; Provisional
Probab=70.27 E-value=1.1e+02 Score=32.97 Aligned_cols=18 Identities=0% Similarity=0.163 Sum_probs=9.0
Q ss_pred HHHHHHHhHhhhhhhHHH
Q 021664 147 AQRQLSSKITSVDRDVNK 164 (309)
Q Consensus 147 aKrhLsqRI~~vD~klde 164 (309)
.++.+..+++.+...|++
T Consensus 181 ~~~~~~~~~~~~~~~l~~ 198 (880)
T PRK02224 181 VLSDQRGSLDQLKAQIEE 198 (880)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555555444
No 121
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=70.19 E-value=57 Score=34.11 Aligned_cols=122 Identities=15% Similarity=0.287 Sum_probs=75.2
Q ss_pred hhheeeEEecccCcCcchhhhh-hhH-------------------HHHHHHHHHhHHHHHHHHH---HHHHHHHHhHhhh
Q 021664 102 AVGYGYVWWKGWKLPDMMFATR-RSL-------------------SDACNSVARQLEDVYSSIS---AAQRQLSSKITSV 158 (309)
Q Consensus 102 avGYgYmwWKGws~SDlMfVTK-Rnm-------------------s~Av~sv~KqLeqVs~sL~---~aKrhLsqRI~~v 158 (309)
--||-.|-=+|..|+++=+-.+ ..+ ......+...+|++|+.+. .||+...+..+.+
T Consensus 232 ~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l 311 (560)
T PF06160_consen 232 KEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKEL 311 (560)
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3488889889999988543322 112 2234445566667777665 4777777777777
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHH-------------------------------HHHHHHHHHHHHHHh
Q 021664 159 DRDVNKIVEISQATQEEVTILRGRSKLIGDEFQS-------------------------------VRDIVQTLESKLIEI 207 (309)
Q Consensus 159 D~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~-------------------------------v~~~V~~Le~Ki~~i 207 (309)
.+.+++..+-.+.+..|+..++..-.--..|++. +...+..+...|..|
T Consensus 312 ~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~i 391 (560)
T PF06160_consen 312 YEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEI 391 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777766555432211122221 222344555566677
Q ss_pred hhhhhhHhHHHHHHHH
Q 021664 208 EGKQDITTLGVKKLCD 223 (309)
Q Consensus 208 e~kQd~Tn~GV~~LC~ 223 (309)
+..|.--+..+..|+.
T Consensus 392 e~~q~~~~~~l~~L~~ 407 (560)
T PF06160_consen 392 EEEQEEINESLQSLRK 407 (560)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777777774
No 122
>PRK02793 phi X174 lysis protein; Provisional
Probab=70.10 E-value=17 Score=28.32 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=36.1
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021664 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (309)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (309)
.+.+||..|..++--|....+...+.|++-+..+ +.++.-+..|-.|+.+++
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I-------~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEM-------AKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhc
Confidence 4778999999988888888888888887766664 444444444445555544
No 123
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=69.62 E-value=51 Score=26.19 Aligned_cols=60 Identities=13% Similarity=0.235 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHH
Q 021664 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (309)
Q Consensus 138 eqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le 201 (309)
.+|-++|..+++.|.+-+++-...++...+-++.+++- +.....+++-++.=+.++..|+
T Consensus 4 ~~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~----~~e~~~~~~~l~~s~~ll~~l~ 63 (92)
T PF03908_consen 4 SDVTESLRRTRQMMAQEVERSELTLQTLEESSATLRST----NDEYDGQSSLLKKSRKLLKKLE 63 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999988887777666655544432 2223345555555565555554
No 124
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=69.59 E-value=75 Score=30.80 Aligned_cols=47 Identities=21% Similarity=0.340 Sum_probs=33.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021664 134 ARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR 180 (309)
Q Consensus 134 ~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~ 180 (309)
.++|++.-+.|.+.+.....++..|...+++..+-.+.+++||.-++
T Consensus 62 ~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~ 108 (258)
T PF15397_consen 62 HKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLS 108 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777777777777777777777777777775544
No 125
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=69.55 E-value=1.1e+02 Score=29.30 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhcC
Q 021664 61 LLAEVSSVQQELSHV 75 (309)
Q Consensus 61 L~aQV~~LaqEl~~L 75 (309)
+.+|+.+|..++..|
T Consensus 86 l~~~~~~l~a~~~~l 100 (423)
T TIGR01843 86 LESQVLRLEAEVARL 100 (423)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777776665
No 126
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=69.28 E-value=65 Score=26.77 Aligned_cols=12 Identities=25% Similarity=0.526 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 021664 61 LLAEVSSVQQEL 72 (309)
Q Consensus 61 L~aQV~~LaqEl 72 (309)
|......+...|
T Consensus 32 l~~~~~~~~~~l 43 (202)
T PF01442_consen 32 LAEEIEALSERL 43 (202)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 127
>PRK13694 hypothetical protein; Provisional
Probab=69.19 E-value=26 Score=28.76 Aligned_cols=49 Identities=20% Similarity=0.329 Sum_probs=32.1
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHH
Q 021664 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT 199 (309)
Q Consensus 147 aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~ 199 (309)
|..+|.+=|+++..==+|-++|+..|++=-.++++. |+|++.++++|.-
T Consensus 10 a~~~Lr~fIERIERLEeEkk~i~~dikdVyaEAK~~----GfD~K~~r~ii~l 58 (83)
T PRK13694 10 AKEQLRAFIERIERLEEEKKTISDDIKDVYAEAKGN----GFDVKALKTIIRL 58 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCcHHHHHHHHHH
Confidence 444444444444333356677777777777777665 9999999998853
No 128
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=69.01 E-value=20 Score=33.95 Aligned_cols=38 Identities=13% Similarity=0.154 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHH
Q 021664 169 SQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (309)
Q Consensus 169 s~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ 206 (309)
....+.||.++|+.+++...+++.+++--..|=..|++
T Consensus 63 l~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 63 LSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666666666666554444444444
No 129
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.87 E-value=87 Score=35.94 Aligned_cols=79 Identities=11% Similarity=0.194 Sum_probs=47.0
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHH
Q 021664 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIV 197 (309)
Q Consensus 119 MfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V 197 (309)
-..-|.++......+...+++.-+.+...++++.-==..++....+..++...-+.+...++..+..+..+++.+..+.
T Consensus 879 ~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 957 (1311)
T TIGR00606 879 NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYM 957 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446777777777777777777777777666654433444444444444555555555555555555555555555443
No 130
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=68.83 E-value=73 Score=33.59 Aligned_cols=35 Identities=14% Similarity=0.224 Sum_probs=15.1
Q ss_pred HHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHh
Q 021664 173 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (309)
Q Consensus 173 ~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (309)
++++.+++.++.....+++.++.-+..++.++.++
T Consensus 434 ~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 434 QNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444433
No 131
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=68.70 E-value=1e+02 Score=30.18 Aligned_cols=86 Identities=14% Similarity=0.197 Sum_probs=38.1
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHH---HHHHHHhHhhhhhhHHHH----HHHHHHHHHHHHHhhhchhhhhhhHHHHH
Q 021664 122 TRRSLSDACNSVARQLEDVYSSISAA---QRQLSSKITSVDRDVNKI----VEISQATQEEVTILRGRSKLIGDEFQSVR 194 (309)
Q Consensus 122 TKRnms~Av~sv~KqLeqVs~sL~~a---KrhLsqRI~~vD~klde~----~eis~~i~~eV~~v~~dl~~ig~Dv~~v~ 194 (309)
..-.|.+--+.+.++++.+.+.+... +..|...+..+..-.+++ .+.-+.+++++.+...+++....++..++
T Consensus 152 ~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~ 231 (312)
T smart00787 152 NLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELE 231 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666666655544333 333444444443333332 11223334444444444444444444444
Q ss_pred HHHHHHHHHHHHh
Q 021664 195 DIVQTLESKLIEI 207 (309)
Q Consensus 195 ~~V~~Le~Ki~~i 207 (309)
.-+..++.+|...
T Consensus 232 ~~l~~l~~~I~~~ 244 (312)
T smart00787 232 EELQELESKIEDL 244 (312)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 132
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=68.66 E-value=49 Score=37.79 Aligned_cols=63 Identities=11% Similarity=0.278 Sum_probs=38.8
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHH-HHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 021664 148 QRQLSSKITSVDRDVNKIVEISQATQEEV-TILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (309)
Q Consensus 148 KrhLsqRI~~vD~klde~~eis~~i~~eV-~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (309)
.+|.-.+|+..-+..|.+.......+++. ..+..+++++..+++.+..-|..||.-+.++..+
T Consensus 360 ~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e 423 (1074)
T KOG0250|consen 360 IREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREE 423 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666667777777777766666666666 5556666666666666666666655555554433
No 133
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=68.60 E-value=75 Score=29.82 Aligned_cols=89 Identities=11% Similarity=0.213 Sum_probs=62.5
Q ss_pred cchhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHH
Q 021664 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI 196 (309)
Q Consensus 117 DlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~ 196 (309)
++|=....++.+ .+..++.|..+.++..+++ +-++.++.+...|+..+.+-+.--++.+.--....+|..|-+++|+=
T Consensus 103 ~l~esl~~~i~~-~~~aa~~i~~~~~~~~~~~-~Y~eqm~~aa~~l~~LN~~Ye~QL~~as~q~~~~~~i~~na~~fkeQ 180 (202)
T TIGR03513 103 TLMQSLGNGINN-FEGAAKTLAPMTDSYAQQK-KYIEQMSSLAANMEGLNTIYEAQLKGASSHADANNEIAINSSSLKEE 180 (202)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 6677788888999888888 67888999999998888876655554444444556667777777777
Q ss_pred HHHHHHHHHHh
Q 021664 197 VQTLESKLIEI 207 (309)
Q Consensus 197 V~~Le~Ki~~i 207 (309)
++.|-..|.++
T Consensus 181 ~~kLa~NL~sL 191 (202)
T TIGR03513 181 MEKMAANLTSL 191 (202)
T ss_pred HHHHHHHHHHH
Confidence 77777777665
No 134
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=68.45 E-value=16 Score=29.90 Aligned_cols=59 Identities=17% Similarity=0.361 Sum_probs=37.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHH---HHHHHHHHHHHHHhhhchhhhhhhHHHHH
Q 021664 132 SVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI---VEISQATQEEVTILRGRSKLIGDEFQSVR 194 (309)
Q Consensus 132 sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~---~eis~~i~~eV~~v~~dl~~ig~Dv~~v~ 194 (309)
+|++++|.+.+.|+..++ |++.|+.+|... .|--+.+.+|.+.+...++.-..++..+|
T Consensus 2 ~V~~eId~lEekl~~cr~----~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lr 63 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRR----RLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLR 63 (85)
T ss_pred cHHHHHhhHHHHHHHHHH----HHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 588999999999988876 567788877542 22333444555555555444444444444
No 135
>PRK00295 hypothetical protein; Provisional
Probab=68.43 E-value=23 Score=27.31 Aligned_cols=41 Identities=10% Similarity=0.057 Sum_probs=28.4
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHH
Q 021664 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 191 (309)
Q Consensus 151 LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~ 191 (309)
+..||..|..|+--|....+...+.|+.-+..+......+.
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~ 43 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMA 43 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888888888888877766666444433333
No 136
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=68.07 E-value=44 Score=34.94 Aligned_cols=96 Identities=14% Similarity=0.204 Sum_probs=70.3
Q ss_pred HHHHHhHHHHHHHHHHHHH---HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHh
Q 021664 131 NSVARQLEDVYSSISAAQR---QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (309)
Q Consensus 131 ~sv~KqLeqVs~sL~~aKr---hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (309)
+.+...|=..-++|..-|. .++|-|++|..+-+-..|--+.-+.|-.++.+--++...-...|-+.|+.-|-|-..+
T Consensus 114 ~gvnSGLvrAKDSItSlKekt~~vnQHVq~LQseCsvlsEnLErrrQEaeELEgyCsqLk~nCrkVt~SVedaEiKtnvL 193 (558)
T PF15358_consen 114 EGVNSGLVRAKDSITSLKEKTSRVNQHVQTLQSECSVLSENLERRRQEAEELEGYCSQLKENCRKVTRSVEDAEIKTNVL 193 (558)
T ss_pred hhhcccceecccchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccc
Confidence 3333333334444444443 4567777777777767777777778888888888888888899999999999998888
Q ss_pred hhhhhhHhHHHHHHHHHHH
Q 021664 208 EGKQDITTLGVKKLCDRAR 226 (309)
Q Consensus 208 e~kQd~Tn~GV~~LC~f~~ 226 (309)
.-+-..--+-+.||-+.++
T Consensus 194 kqnS~~LEekLr~lq~qLq 212 (558)
T PF15358_consen 194 KQNSALLEEKLRYLQQQLQ 212 (558)
T ss_pred ccchHHHHHHHHHHHHHhc
Confidence 8887788888999987765
No 137
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=67.89 E-value=6.6 Score=32.97 Aligned_cols=48 Identities=6% Similarity=0.268 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHH
Q 021664 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQAT 172 (309)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i 172 (309)
++.+++..+..-|.++.+.+.+++..+..+.+.+.+++++.+++....
T Consensus 66 g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~~~~~l~~~k 113 (133)
T PF06148_consen 66 GMDEKIEELRKPLSQFREEVESVRDELDNTQEEIEDKLEERKELREEK 113 (133)
T ss_dssp --------HHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788999999999999999999999999999999888877765543
No 138
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=67.84 E-value=15 Score=29.89 Aligned_cols=15 Identities=13% Similarity=0.282 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHhcC
Q 021664 61 LLAEVSSVQQELSHV 75 (309)
Q Consensus 61 L~aQV~~LaqEl~~L 75 (309)
|+.|.+.|..+++++
T Consensus 18 l~~~~~~l~~~~~E~ 32 (105)
T cd00632 18 YIVQRQKVEAQLNEN 32 (105)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555556655555555
No 139
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=67.77 E-value=12 Score=32.83 Aligned_cols=15 Identities=13% Similarity=0.255 Sum_probs=9.1
Q ss_pred HHHhhhheeeEEecc
Q 021664 98 VVIVAVGYGYVWWKG 112 (309)
Q Consensus 98 a~iGavGYgYmwWKG 112 (309)
++++++|-+|+||..
T Consensus 7 ~~~a~~~~~~~~~~~ 21 (135)
T TIGR03495 7 LGLLVAGLGWQSQRL 21 (135)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445557778875
No 140
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=67.38 E-value=36 Score=27.08 Aligned_cols=46 Identities=11% Similarity=0.266 Sum_probs=41.1
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHH
Q 021664 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVE 167 (309)
Q Consensus 122 TKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~e 167 (309)
--+||.+-..-|-+-|.|+.+...-.-.++..|||.+...+|+...
T Consensus 10 DpkNmq~LTs~vQ~lLQq~QDkFQtMSDQII~RiDDM~~riDDLEK 55 (73)
T KOG4117|consen 10 DPKNMQDLTSVVQGLLQQTQDKFQTMSDQIIGRIDDMSSRIDDLEK 55 (73)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 3579999999999999999999999999999999999998887643
No 141
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=67.24 E-value=30 Score=34.16 Aligned_cols=55 Identities=9% Similarity=0.297 Sum_probs=28.9
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHh
Q 021664 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (309)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (309)
++.++|.+++..+.++....+.-++-++.+... +..-++.|+.-|..||.||..+
T Consensus 333 ~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~---~~~N~~~i~~n~~~le~Ri~~L 387 (388)
T PF04912_consen 333 EFSQTLSELESQQSDLQSQLKKWEELLNKVEEK---FKENMETIEKNVKKLEERIAKL 387 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcc
Confidence 444555555555554444444444444444443 4555556666666666666543
No 142
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.14 E-value=63 Score=26.13 Aligned_cols=67 Identities=15% Similarity=0.230 Sum_probs=43.7
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHH
Q 021664 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (309)
Q Consensus 155 I~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (309)
++.+..|+.+..+.+...+=||.+++++=.....++++.++..+.|+..=..+...|..-..-+..|
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777777777777777777777777777777777777766666655544444444443
No 143
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=67.06 E-value=1.1e+02 Score=31.92 Aligned_cols=45 Identities=18% Similarity=0.198 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhh
Q 021664 168 ISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (309)
Q Consensus 168 is~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (309)
..+.++.|+.+++.+|..+..|+..++..|..|...|...-....
T Consensus 282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~ 326 (522)
T PF05701_consen 282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELE 326 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777778888888888888888888777765544333
No 144
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=67.04 E-value=23 Score=30.16 Aligned_cols=51 Identities=10% Similarity=0.134 Sum_probs=31.1
Q ss_pred chhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 021664 118 MMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (309)
Q Consensus 118 lMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV 176 (309)
+|..|+++..+. .++...|..+|.+|.+-=+.|.+..++..++-..+.++-
T Consensus 16 ~~r~~~~~~~~q--------~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y 66 (128)
T PF06295_consen 16 IGRLTSSNQQKQ--------AKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDY 66 (128)
T ss_pred HHHHhccchhhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554332 344455556666666666677777777777766666555
No 145
>PRK04325 hypothetical protein; Provisional
Probab=66.95 E-value=25 Score=27.59 Aligned_cols=52 Identities=8% Similarity=0.148 Sum_probs=35.2
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021664 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (309)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (309)
.+..||+.|..|+--|....+...+.|++-+..+ +.++.-+.-|-.|+.+++
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I-------~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTL-------DLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhc
Confidence 4778888888888888888888888887766664 444444444445555543
No 146
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=66.93 E-value=3.8 Score=39.07 Aligned_cols=73 Identities=21% Similarity=0.232 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhcC-CCceEEEeCCCCCCCCchhHH-HHHHhhhheeeEE-ecccC--cCcchhhhhhhHHHHHHHHHH
Q 021664 62 LAEVSSVQQELSHV-PRSVIIETSSGSGTGAKKYGV-IVVIVAVGYGYVW-WKGWK--LPDMMFATRRSLSDACNSVAR 135 (309)
Q Consensus 62 ~aQV~~LaqEl~~L-sr~iTVvn~~ssg~gg~~y~l-~a~iGavGYgYmw-WKGws--~SDlMfVTKRnms~Av~sv~K 135 (309)
.+--++|+++|++. ...|.|+-++|-|+. .-.+. -+++|+.|.-++| |.|-+ |..-+.+|.++.+|-.++.+.
T Consensus 125 d~sA~~ir~~l~~~~g~~v~VIItDt~gr~-~R~G~~gvAIG~aG~~~l~d~~G~~D~~G~~L~~T~~avaDelAaaA~ 202 (243)
T TIGR01916 125 DASAEKIRRGLRELTGVDVGVIITDTNGRP-FREGQVGVAIGAAGLKVLRDWRGEKDLYGRELEVTEVAVADELAAAAN 202 (243)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCCCc-cccCCCCeeeeccCChHHHhcCCCcCCCCCeeeccHHHHHHHHHHHHH
Confidence 34568899999998 788888888855553 23344 4689999999998 88764 334578999988887766543
No 147
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=66.67 E-value=26 Score=28.69 Aligned_cols=48 Identities=10% Similarity=0.214 Sum_probs=38.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021664 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG 181 (309)
Q Consensus 130 v~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~ 181 (309)
++.|-.+|+++...| .||-+|-|+|-.+|.+..+-.++|+.+..+-..
T Consensus 28 ~~~ins~LD~Lns~L----D~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~~ 75 (83)
T PF03670_consen 28 YAAINSMLDQLNSCL----DHLEQRNDHLHAQLQELLESNRQIRLEFQEQLS 75 (83)
T ss_pred HHHHHHHHHHHHHHH----HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566777887766555 689999999999999999999999988755443
No 148
>PRK03918 chromosome segregation protein; Provisional
Probab=66.16 E-value=44 Score=35.70 Aligned_cols=62 Identities=13% Similarity=0.333 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHH---HHHHHhhhchhhhhhhHHHHHHHH
Q 021664 136 QLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQ---EEVTILRGRSKLIGDEFQSVRDIV 197 (309)
Q Consensus 136 qLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~---~eV~~v~~dl~~ig~Dv~~v~~~V 197 (309)
.++..++.+...++.+..+|+.+...+.+..++.+.+. .++.++...++.+...+..+...+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~ 223 (880)
T PRK03918 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREEL 223 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888889999998888888866655544322 333344444444444333333333
No 149
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=66.00 E-value=59 Score=32.20 Aligned_cols=77 Identities=13% Similarity=0.207 Sum_probs=37.3
Q ss_pred HHHHhhhheeeEEecccCcCcchhhhhhhHHHHHHHHHHhHH-HHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 021664 97 IVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLE-DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE 175 (309)
Q Consensus 97 ~a~iGavGYgYmwWKGws~SDlMfVTKRnms~Av~sv~KqLe-qVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~e 175 (309)
++++|+.||.|.++....+. .+-..++.-.+....+++ +....+....+....++..+..++.....-...++++
T Consensus 40 ~~alg~~~~~~~~~q~~~~~----~~~~~L~~ql~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~l~~~ 115 (372)
T PF04375_consen 40 ALALGAGGWYWQQQQLQQLQ----QQLQALQQQLQQLQQQLEAQQAQQLRQLQKQQQEQLQQLQQELAQLQQQLAELQQQ 115 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36999999999988653211 111223333333333333 3333444444444555555555555444444444444
Q ss_pred HH
Q 021664 176 VT 177 (309)
Q Consensus 176 V~ 177 (309)
+.
T Consensus 116 ~~ 117 (372)
T PF04375_consen 116 LA 117 (372)
T ss_pred HH
Confidence 43
No 150
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=65.94 E-value=41 Score=36.59 Aligned_cols=91 Identities=12% Similarity=0.200 Sum_probs=55.3
Q ss_pred hhhHHHHHHHHHHhHHHHHHH---HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh-----------hhhh
Q 021664 123 RRSLSDACNSVARQLEDVYSS---ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK-----------LIGD 188 (309)
Q Consensus 123 KRnms~Av~sv~KqLeqVs~s---L~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~-----------~ig~ 188 (309)
|.-+..-++.+..+.++--+. +..-|+.|+.+=+++.+|+++..+-++.+.+-+..+...+. ++..
T Consensus 560 r~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~ 639 (717)
T PF10168_consen 560 REEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKK 639 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 333444444444444433222 34456777777788888888888888887777666544332 2455
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhh
Q 021664 189 EFQSVRDIVQTLESKLIEIEGKQDI 213 (309)
Q Consensus 189 Dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (309)
|++.++.-++.|...|+.+..+.++
T Consensus 640 EL~~~~~~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 640 ELERMKDQLQDLKASIEQLKKKLDY 664 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666776677777777776655554
No 151
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=65.87 E-value=1.1e+02 Score=28.20 Aligned_cols=14 Identities=29% Similarity=0.453 Sum_probs=5.9
Q ss_pred HHHHHHHHHHhHHH
Q 021664 126 LSDACNSVARQLED 139 (309)
Q Consensus 126 ms~Av~sv~KqLeq 139 (309)
|.+-...++.+|..
T Consensus 146 LE~el~~~~~~lk~ 159 (237)
T PF00261_consen 146 LEEELKSVGNNLKS 159 (237)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 152
>PRK00736 hypothetical protein; Provisional
Probab=65.79 E-value=25 Score=27.11 Aligned_cols=50 Identities=8% Similarity=0.217 Sum_probs=33.4
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHh
Q 021664 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (309)
Q Consensus 151 LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (309)
+..||+.|..|+--|....+...+.|+.-+..+ +.++.-+..|-.|+.++
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i-------~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTV-------EQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHh
Confidence 457888888888888888888888886666654 44444444444555543
No 153
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.34 E-value=36 Score=33.06 Aligned_cols=54 Identities=11% Similarity=0.268 Sum_probs=24.6
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021664 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (309)
Q Consensus 155 I~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (309)
|++=|.++.+..+-.+.+++||..+...++.+...+++.+.-+..++.+|..++
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~ 86 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQ 86 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555544444444444444444444433333333333333
No 154
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=65.18 E-value=89 Score=33.43 Aligned_cols=91 Identities=13% Similarity=0.180 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHH
Q 021664 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (309)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~K 203 (309)
.-|...|.+-...|.++..--...|+-|...+.++..+.+....=++.-.++|..+|..+..+-.|++.=.+....|...
T Consensus 397 ~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e 476 (594)
T PF05667_consen 397 AKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKE 476 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34588888889999999999999999999999999988887777777777889999999999999999989998999888
Q ss_pred HHHhhhhhhhH
Q 021664 204 LIEIEGKQDIT 214 (309)
Q Consensus 204 i~~ie~kQd~T 214 (309)
+.++...-+++
T Consensus 477 ~e~~~k~~~Rs 487 (594)
T PF05667_consen 477 LEKLPKDVNRS 487 (594)
T ss_pred HHhCCCCCCHH
Confidence 88887664433
No 155
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=65.17 E-value=55 Score=31.92 Aligned_cols=71 Identities=10% Similarity=0.149 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021664 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (309)
Q Consensus 138 eqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (309)
.+--+.|...+.+|.+.|..+..+.++..+-....-.+.+..+.++.++.++.+++..-..-...++++++
T Consensus 63 ~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 63 LQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556667777777777777777777777777777888888888888888888888888888888666
No 156
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=65.12 E-value=29 Score=34.95 Aligned_cols=15 Identities=13% Similarity=0.368 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHhc
Q 021664 60 DLLAEVSSVQQELSH 74 (309)
Q Consensus 60 dL~aQV~~LaqEl~~ 74 (309)
+|..+..+|.+++..
T Consensus 231 ~L~~~ltrL~~~~~~ 245 (370)
T PLN03094 231 ELVGICTRLAREMEA 245 (370)
T ss_pred HHHHHHHHHHHHhhh
Confidence 366666666666654
No 157
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.90 E-value=27 Score=27.93 Aligned_cols=39 Identities=5% Similarity=0.040 Sum_probs=30.8
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh
Q 021664 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI 186 (309)
Q Consensus 148 KrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~i 186 (309)
...|-+||..|.+++--|....+.+.+.|++-+..+++.
T Consensus 3 ~~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~ 41 (72)
T COG2900 3 DMELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKL 41 (72)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999888888888887776664433
No 158
>PRK02224 chromosome segregation protein; Provisional
Probab=64.60 E-value=1.3e+02 Score=32.51 Aligned_cols=16 Identities=6% Similarity=0.372 Sum_probs=7.5
Q ss_pred ccceeeccCCCCcchh
Q 021664 16 ILTSVLAKEGRLSSVS 31 (309)
Q Consensus 16 ~~GSvl~knGkLsdv~ 31 (309)
|..+|++.-|.+..++
T Consensus 129 f~~~~~i~Qge~~~~l 144 (880)
T PRK02224 129 FVNCAYVRQGEVNKLI 144 (880)
T ss_pred hcceeEeeccChHHHH
Confidence 3444555555544443
No 159
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=64.39 E-value=39 Score=30.92 Aligned_cols=64 Identities=17% Similarity=0.274 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021664 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (309)
Q Consensus 139 qVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (309)
||+..|+.+-.+|.+.+|.....|++ =++++.+++ ..++.+....+.++.-+.-|+..|+..+.
T Consensus 102 QVqqeL~~tf~rL~~~Vd~~~~eL~~---eI~~L~~~i----~~le~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQTKNELED---EIKQLEKEI----QRLEEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp --------HHHHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777666555444432 222223332 22355556667777777777777776653
No 160
>PRK04098 sec-independent translocase; Provisional
Probab=64.28 E-value=23 Score=32.05 Aligned_cols=57 Identities=18% Similarity=0.280 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021664 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG 181 (309)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~ 181 (309)
.-|-.+...+++-+..+-..+..+|.++.+-+. +++--++..+..+.+.+.+..+|.
T Consensus 23 ~KLP~~~r~lGk~ir~~K~~~~~~k~~l~~Ei~-~~elk~e~~k~k~~l~~~~~~l~~ 79 (158)
T PRK04098 23 DKLPQAMVDIAKFFKAVKKTINDAKSTLDKEIN-IEEIKEEALKYKKEFESAVESLKK 79 (158)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346777788888888888889999888887653 222223333444555555555554
No 161
>COG5283 Phage-related tail protein [Function unknown]
Probab=64.20 E-value=69 Score=37.09 Aligned_cols=91 Identities=13% Similarity=0.157 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH---HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHH
Q 021664 126 LSDACNSVARQLEDVYSSISAAQRQLS---SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (309)
Q Consensus 126 ms~Av~sv~KqLeqVs~sL~~aKrhLs---qRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~ 202 (309)
|-+++...++--....+.+..||+-|+ .|.+.+-+.|++++..-+..++|+.|+-+.+...+.+.+.+..-....|.
T Consensus 27 L~ssi~~~~~~~k~~e~q~k~t~~~ls~s~~k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~tqae~ 106 (1213)
T COG5283 27 LKSSIKDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQAEN 106 (1213)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555556666554 68899999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhHhH
Q 021664 203 KLIEIEGKQDITTL 216 (309)
Q Consensus 203 Ki~~ie~kQd~Tn~ 216 (309)
++.++...++.+-.
T Consensus 107 ~~~sas~q~~~a~~ 120 (1213)
T COG5283 107 KLRSLSGQFGVASE 120 (1213)
T ss_pred HHHHHHhhhchhhH
Confidence 99999999987743
No 162
>PRK03918 chromosome segregation protein; Provisional
Probab=64.09 E-value=86 Score=33.53 Aligned_cols=21 Identities=14% Similarity=0.171 Sum_probs=8.3
Q ss_pred CCCCCCCCCCCCCCCCcccccc
Q 021664 268 LEPPSPSXXXXXXXIPMDLIRN 289 (309)
Q Consensus 268 ~e~~sps~~~~~~~~~~~~~~~ 289 (309)
+||-+.-.+.+ ...-+++++.
T Consensus 819 DEp~~~lD~~~-~~~l~~~l~~ 839 (880)
T PRK03918 819 DEPTPFLDEER-RRKLVDIMER 839 (880)
T ss_pred eCCCcccCHHH-HHHHHHHHHH
Confidence 55544333322 2333444443
No 163
>PRK10698 phage shock protein PspA; Provisional
Probab=64.06 E-value=1.2e+02 Score=28.13 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=27.1
Q ss_pred HHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhh
Q 021664 172 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (309)
Q Consensus 172 i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (309)
..+.+..++..+.....-++.++.-+..|+.||.+...+++
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~ 137 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQ 137 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666777777777777777776654
No 164
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=64.06 E-value=1.2e+02 Score=30.35 Aligned_cols=13 Identities=8% Similarity=-0.054 Sum_probs=5.9
Q ss_pred hhhhhhhHHHHHH
Q 021664 119 MFATRRSLSDACN 131 (309)
Q Consensus 119 MfVTKRnms~Av~ 131 (309)
.-.|..|+..|=+
T Consensus 203 ~~~s~~ni~~a~~ 215 (384)
T PF03148_consen 203 EEFSNENIQRAEK 215 (384)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555544433
No 165
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=64.05 E-value=37 Score=34.76 Aligned_cols=83 Identities=17% Similarity=0.169 Sum_probs=45.7
Q ss_pred HHhhhheeeEEecccCcCcchhhhhhh---HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHH------HHHHHH
Q 021664 99 VIVAVGYGYVWWKGWKLPDMMFATRRS---LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVN------KIVEIS 169 (309)
Q Consensus 99 ~iGavGYgYmwWKGws~SDlMfVTKRn---ms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~kld------e~~eis 169 (309)
...|+++||. ---+|.|=+.-|+.. ..+.++++.+|.+.+.+++..+++ +-++++++.++ +-..+.
T Consensus 93 ~~aaIi~~f~--GN~~~h~gV~~t~~si~~an~tv~~l~nqv~~l~~al~~t~~---~~L~~L~~il~~~~~~~~~~~~~ 167 (418)
T cd07912 93 CCAAIGVGLY--GNDETHDGVVQLTYSLRNANHTVAGIDNQTSDTEASLNVTVE---PQLTNLEDIFDARVNKTDYLQIV 167 (418)
T ss_pred HHHHHHHHhh--ccHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---hhHhHHHHHhCCCcchhhHHHHH
Confidence 4456666553 223344444444444 477778888888888888888876 34445544333 222333
Q ss_pred HHHHHHHHHhhhchhhh
Q 021664 170 QATQEEVTILRGRSKLI 186 (309)
Q Consensus 170 ~~i~~eV~~v~~dl~~i 186 (309)
+.++.+++.+..++..+
T Consensus 168 ~~~q~~~~n~~~~~~~~ 184 (418)
T cd07912 168 QGLQQMATNAAQQLTGI 184 (418)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 44555555544444444
No 166
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=63.88 E-value=41 Score=23.27 Aligned_cols=42 Identities=12% Similarity=0.148 Sum_probs=21.9
Q ss_pred HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHH
Q 021664 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (309)
Q Consensus 153 qRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~ 194 (309)
+.|+++...+-++..+...|..+|.+=..-+.+|...++..+
T Consensus 6 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~ 47 (60)
T cd00193 6 EELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNAD 47 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666666666666665554444444444444443
No 167
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=63.78 E-value=96 Score=26.68 Aligned_cols=97 Identities=16% Similarity=0.184 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHH---HhhhchhhhhhhHHHHH------
Q 021664 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT---ILRGRSKLIGDEFQSVR------ 194 (309)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~---~v~~dl~~ig~Dv~~v~------ 194 (309)
..|++++..+++.++.+++.....-++. ...+.+-|++.......+++-+. .+..++.....++...+
T Consensus 60 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~e~L~~y~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl 136 (218)
T cd07596 60 GELGEALSKLGKAAEELSSLSEAQANQE---LVKLLEPLKEYLRYCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKL 136 (218)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999998888877655544 33455555555555554444322 23333333444443333
Q ss_pred --------HHHHHHHHHHHHhhhhhhhHhHHHHHHHH
Q 021664 195 --------DIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (309)
Q Consensus 195 --------~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~ 223 (309)
..|..|+.+|...|.....+..-....|+
T Consensus 137 ~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~ 173 (218)
T cd07596 137 KAAPGIKPAKVEELEEELEEAESALEEARKRYEEISE 173 (218)
T ss_pred hhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23445555555555555555554444444
No 168
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=63.37 E-value=25 Score=26.91 Aligned_cols=15 Identities=7% Similarity=0.472 Sum_probs=9.1
Q ss_pred HHHHhHhhhhhhHHH
Q 021664 150 QLSSKITSVDRDVNK 164 (309)
Q Consensus 150 hLsqRI~~vD~klde 164 (309)
++.+||.+++.++|+
T Consensus 3 ~i~e~l~~ie~~l~~ 17 (71)
T PF10779_consen 3 DIKEKLNRIETKLDN 17 (71)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666666666665
No 169
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=62.54 E-value=76 Score=33.48 Aligned_cols=45 Identities=7% Similarity=0.106 Sum_probs=22.4
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHH
Q 021664 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (309)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~ 194 (309)
++..+++.++.+++++.+-.+..+++...++.+++.+..+++.++
T Consensus 425 ~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 469 (650)
T TIGR03185 425 QLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKT 469 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555555554444433
No 170
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=62.53 E-value=60 Score=34.33 Aligned_cols=83 Identities=14% Similarity=0.349 Sum_probs=66.6
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHH
Q 021664 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (309)
Q Consensus 121 VTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~L 200 (309)
+.|..+-..-..++.++.+.++.|..-|+.....|...-+++....+-...+.+++..+ ...|.+...+.+--..|
T Consensus 131 a~r~~vl~~a~~l~~~in~~~~~L~~l~~~i~~~I~~~V~~vNsLl~qIa~lN~qI~~~----~~~g~~~NdLlDqRD~L 206 (552)
T COG1256 131 AARQAVLSKAQTLVNQINNTYEQLTDLRKDINAEIAATVDEVNSLLKQIADLNKQIRKV----KAAGNDPNDLLDQRDQL 206 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCCCCchhHHHHHHHH
Confidence 67788888888999999999999999999999988888777777777777777777666 56777777777777777
Q ss_pred HHHHHHh
Q 021664 201 ESKLIEI 207 (309)
Q Consensus 201 e~Ki~~i 207 (309)
..+|..+
T Consensus 207 v~eLs~~ 213 (552)
T COG1256 207 VDELSQL 213 (552)
T ss_pred HHHHHhh
Confidence 7777754
No 171
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=62.52 E-value=1.1e+02 Score=26.89 Aligned_cols=96 Identities=14% Similarity=0.189 Sum_probs=61.8
Q ss_pred cCcchhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH---HHHHHHHHH----H-HHhhhchhhh
Q 021664 115 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV---EISQATQEE----V-TILRGRSKLI 186 (309)
Q Consensus 115 ~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~---eis~~i~~e----V-~~v~~dl~~i 186 (309)
+.|+|.=.-++..+-++.+-..|++++..=..|+.....=-+.+...+.... .+-.++.++ . ......+..+
T Consensus 23 i~~~L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~~~~~e~~i~~~ 102 (146)
T PF08702_consen 23 IQDFLDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMIIYILETKIINQ 102 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4677888888888888888888888887777766555444444444433211 233333333 2 3334445555
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhh
Q 021664 187 GDEFQSVRDIVQTLESKLIEIEGK 210 (309)
Q Consensus 187 g~Dv~~v~~~V~~Le~Ki~~ie~k 210 (309)
-.-+..++.+++.+..||.++|-+
T Consensus 103 ~~~I~~Lq~~~~~~~~ki~~Le~~ 126 (146)
T PF08702_consen 103 PSNIRVLQNILRSNRQKIQRLEQD 126 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 666788888888888888888754
No 172
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=62.50 E-value=67 Score=24.48 Aligned_cols=60 Identities=10% Similarity=0.284 Sum_probs=30.1
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021664 146 AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (309)
Q Consensus 146 ~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (309)
...+.|.+.|+..+..|.+ +...=-.+.-.+-+.+..+..++..++..+..|...+..+.
T Consensus 26 ~~~~~L~~~i~~~~~eLr~---~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~l~ 85 (87)
T PF08700_consen 26 QLENKLRQEIEEKDEELRK---LVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQSLQ 85 (87)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444455444443322 22222333444555555666666666666666666665554
No 173
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=62.37 E-value=1.3e+02 Score=29.45 Aligned_cols=36 Identities=25% Similarity=0.273 Sum_probs=15.6
Q ss_pred HHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 021664 175 EVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (309)
Q Consensus 175 eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (309)
+...+|.++.....++...+.-+..++..+..++.+
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~ 240 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESK 240 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444433
No 174
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.08 E-value=37 Score=37.35 Aligned_cols=72 Identities=14% Similarity=0.263 Sum_probs=37.7
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHH
Q 021664 145 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDR 224 (309)
Q Consensus 145 ~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f 224 (309)
......+..+|.++|++++....-++....+- +.++...+..+..|..||.+|..+-..|-+=|.-+|+=
T Consensus 39 d~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~----------~e~l~da~~ai~eL~~~i~eiks~ae~Te~~V~eiTrd 108 (793)
T KOG2180|consen 39 DSLIQKIQGEIRRVDKNLLAVVRTQENSGTRG----------KENLADAQAAIEELFQKIQEIKSVAESTEAMVQEITRD 108 (793)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchh----------hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33444567788888888877665554433221 22334444445555555555555444444444444443
Q ss_pred HH
Q 021664 225 AR 226 (309)
Q Consensus 225 ~~ 226 (309)
++
T Consensus 109 IK 110 (793)
T KOG2180|consen 109 IK 110 (793)
T ss_pred HH
Confidence 33
No 175
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=61.73 E-value=69 Score=24.34 Aligned_cols=62 Identities=10% Similarity=0.229 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhh---hHHHHHHHHHHHHHHHHHhhhchhhhh
Q 021664 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDR---DVNKIVEISQATQEEVTILRGRSKLIG 187 (309)
Q Consensus 126 ms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~---klde~~eis~~i~~eV~~v~~dl~~ig 187 (309)
+-+-|..+...|+.+.+.+..-++.-...+...+. --++..+++..|+.....++..|..+.
T Consensus 5 f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~ 69 (103)
T PF00804_consen 5 FFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLS 69 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888888877776777766662 223333344444444444444433333
No 176
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=61.69 E-value=68 Score=32.06 Aligned_cols=51 Identities=12% Similarity=0.210 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh
Q 021664 136 QLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI 186 (309)
Q Consensus 136 qLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~i 186 (309)
.|++=...|+++-|...++++.+..-+++|..-...-+..+.++...+.+.
T Consensus 8 eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 8 ELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455566667777777777777777777665555555566666665555
No 177
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=61.62 E-value=66 Score=34.17 Aligned_cols=94 Identities=6% Similarity=0.132 Sum_probs=61.1
Q ss_pred CcCcchhhhhhhHHHHHH-----------HHHHhHHHHHHHHHHHHHHHHHhHhhhhh--------hHHHHHHHHHHHHH
Q 021664 114 KLPDMMFATRRSLSDACN-----------SVARQLEDVYSSISAAQRQLSSKITSVDR--------DVNKIVEISQATQE 174 (309)
Q Consensus 114 s~SDlMfVTKRnms~Av~-----------sv~KqLeqVs~sL~~aKrhLsqRI~~vD~--------klde~~eis~~i~~ 174 (309)
.-++.+.-+-+.|+++.+ .+..|+..|+.-+.-..+.|..||..+.. .+++.....+.+..
T Consensus 333 Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~ 412 (531)
T PF15450_consen 333 QETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEK 412 (531)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455777788888777642 33444445555555666777777776653 34556667777777
Q ss_pred HHHHhhhchhhhhhhHHHHHHHH----HHHHHHHHHh
Q 021664 175 EVTILRGRSKLIGDEFQSVRDIV----QTLESKLIEI 207 (309)
Q Consensus 175 eV~~v~~dl~~ig~Dv~~v~~~V----~~Le~Ki~~i 207 (309)
...++++.++.+..||+.|.... +.++.||+.-
T Consensus 413 ~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kIdtE 449 (531)
T PF15450_consen 413 HLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKIDTE 449 (531)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhccHH
Confidence 78888888888888888877653 3455555543
No 178
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=61.52 E-value=25 Score=32.62 Aligned_cols=34 Identities=12% Similarity=0.220 Sum_probs=24.6
Q ss_pred HHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHH
Q 021664 172 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (309)
Q Consensus 172 i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~ 205 (309)
.-+|+-++...|+++..|+++++.-...|+.+++
T Consensus 160 ~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 160 TVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566777777778888888888766666666665
No 179
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=61.44 E-value=77 Score=26.34 Aligned_cols=19 Identities=0% Similarity=0.303 Sum_probs=10.6
Q ss_pred HHHHHHHHhHHHHHHHHHH
Q 021664 128 DACNSVARQLEDVYSSISA 146 (309)
Q Consensus 128 ~Av~sv~KqLeqVs~sL~~ 146 (309)
+-|..|..+|..+...+..
T Consensus 6 ~~v~~I~~~i~~i~~~v~~ 24 (151)
T cd00179 6 EEVEEIRGNIDKISEDVEE 24 (151)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456666666666555433
No 180
>PHA01750 hypothetical protein
Probab=61.27 E-value=26 Score=28.01 Aligned_cols=31 Identities=16% Similarity=0.438 Sum_probs=22.3
Q ss_pred chhhhhhhHHHHHHHHH-HhHHHHHHHHHHHH
Q 021664 118 MMFATRRSLSDACNSVA-RQLEDVYSSISAAQ 148 (309)
Q Consensus 118 lMfVTKRnms~Av~sv~-KqLeqVs~sL~~aK 148 (309)
+-|--|..+.||+..+- +-|+++-..|+++|
T Consensus 24 lYlKIKq~lkdAvkeIV~~ELdNL~~ei~~~k 55 (75)
T PHA01750 24 LYLKIKQALKDAVKEIVNSELDNLKTEIEELK 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566888999998754 45777777777766
No 181
>PRK09110 flagellar motor protein MotA; Validated
Probab=61.14 E-value=60 Score=31.43 Aligned_cols=94 Identities=15% Similarity=0.170 Sum_probs=70.7
Q ss_pred hhHHHHHHhhhheeeEEecc-----cCcCcchhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh---HhhhhhhHHH
Q 021664 93 KYGVIVVIVAVGYGYVWWKG-----WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSK---ITSVDRDVNK 164 (309)
Q Consensus 93 ~y~l~a~iGavGYgYmwWKG-----ws~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqR---I~~vD~klde 164 (309)
..|+++++|++.+||++=.| |.++-+|-|-=-.+ ++.-++--+..+-.++...|+-+..+ -++..+-++.
T Consensus 4 liGli~~~~~i~~g~~l~gg~~~~l~~~~~~lIV~Ggtl--ga~lv~~p~~~i~~~~k~~~~~f~~~~~~~~~~~~li~~ 81 (283)
T PRK09110 4 IIGYIVVLGSVFGGYLLAGGHLGALIQPAELLIIGGAAL--GAFIVGNPGKAIKATLKALPKLFKGPKYKKADYMDLLAL 81 (283)
T ss_pred HHHHHHHHHHHHHHHHHcCCChhHhhchhHHHHHHHhHH--HHHHHcCCHHHHHHHHHHHHHHhcCCCCCccCHHHHHHH
Confidence 35667788889899998666 77888888876544 44557778899999999999988744 6667788888
Q ss_pred HHHHHHHHHHH-HHHhhhchhhhhh
Q 021664 165 IVEISQATQEE-VTILRGRSKLIGD 188 (309)
Q Consensus 165 ~~eis~~i~~e-V~~v~~dl~~ig~ 188 (309)
..+++...|++ +-.+..+++++.+
T Consensus 82 l~~l~~~aRk~GllaLE~~v~~~~~ 106 (283)
T PRK09110 82 LYELLRKARQEGMMALEAHIENPEE 106 (283)
T ss_pred HHHHHHHHHhcCHHHHHhhhcCccc
Confidence 88888888887 5566666666653
No 182
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=60.86 E-value=60 Score=27.79 Aligned_cols=43 Identities=21% Similarity=0.300 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHHHhHHHHH---HHHHHHHHHHHHhHhhhhhhHHHH
Q 021664 123 RRSLSDACNSVARQLEDVY---SSISAAQRQLSSKITSVDRDVNKI 165 (309)
Q Consensus 123 KRnms~Av~sv~KqLeqVs---~sL~~aKrhLsqRI~~vD~klde~ 165 (309)
|-.+++=.+++...||+.- +-|.+-|+.|....+.|...-+..
T Consensus 11 ~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~ 56 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASR 56 (107)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555432 234444444444444444433333
No 183
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.72 E-value=25 Score=30.52 Aligned_cols=66 Identities=18% Similarity=0.303 Sum_probs=40.1
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHH
Q 021664 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLC 222 (309)
Q Consensus 152 sqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC 222 (309)
.++++.|..|+-..+.++-.|.+||..--.-+..+++|+++-.-...+==+++..+... .|+..+|
T Consensus 35 ee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~-----sg~~l~~ 100 (118)
T KOG3385|consen 35 EEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR-----SGISLLC 100 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc-----CCcchHH
Confidence 44556666666666666666666666666666666666666555444444445444433 6777777
No 184
>PF04344 CheZ: Chemotaxis phosphatase, CheZ; InterPro: IPR007439 This family represents the bacterial chemotaxis phosphatase, CheZ. This protein forms a dimer characterised by a long four-helix bundle, composed of two helices from each monomer. CheZ dephosphorylates CheY in a reaction that is essential to maintain a continuous chemotactic response to environmental changes. It is thought that CheZ's conserved residue Gln 147 orientates a water molecule for nucleophilic attack at the CheY active site. ; GO: 0003824 catalytic activity, 0050920 regulation of chemotaxis, 0009288 bacterial-type flagellum; PDB: 1KMI_Z 2FMK_B 2PMC_F.
Probab=60.63 E-value=94 Score=28.74 Aligned_cols=116 Identities=27% Similarity=0.313 Sum_probs=65.0
Q ss_pred hhHHHHHHHHH--HhH-HHHHHHHHHHHHHHHHhH-------hhhhhhHHHHHHHHHHHHHHHHHhhhchhhh-------
Q 021664 124 RSLSDACNSVA--RQL-EDVYSSISAAQRQLSSKI-------TSVDRDVNKIVEISQATQEEVTILRGRSKLI------- 186 (309)
Q Consensus 124 Rnms~Av~sv~--KqL-eqVs~sL~~aKrhLsqRI-------~~vD~klde~~eis~~i~~eV~~v~~dl~~i------- 186 (309)
|.|-+|...++ +.+ +...+.|-.||.+|.-=| .++=+.+|+...++..+++++.++.....++
T Consensus 13 R~Lhdal~~l~~d~~~~~~~~~~ipdA~~rL~yV~~~TE~AA~~~l~~ve~~~p~~~~l~~~~~~l~~~w~~l~~~~~~~ 92 (214)
T PF04344_consen 13 RQLHDALRELGLDPRLMEEAAEEIPDARDRLNYVITMTEQAANRTLNAVEEALPLQDELREEAEELKARWQRLMARELEP 92 (214)
T ss_dssp HHHHHHHHHHTHHHHH-HHTTTTHHHHHHHTTTHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--H
T ss_pred HHHHHHHHHcCCChhhHHHHHhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccH
Confidence 45555555543 334 556667777777664322 2344455666666666666666665432222
Q ss_pred ----------hhhHHHHHHHHHHHHHHHHHhh---hhhhhHhHHHHHHHHHHHhhccCCCccceec
Q 021664 187 ----------GDEFQSVRDIVQTLESKLIEIE---GKQDITTLGVKKLCDRARELENGRPTELVQA 239 (309)
Q Consensus 187 ----------g~Dv~~v~~~V~~Le~Ki~~ie---~kQd~Tn~GV~~LC~f~~~~~~~~~~~~~Q~ 239 (309)
..-+..+.+....++.++-+|= .=||.|-+=|..+...++.+|..-..-+.--
T Consensus 93 ~e~~~l~~~~~~~l~~~~~~~~~~~~~l~eIm~Aq~FQDLTGQ~IkKVv~~l~~vE~~L~~ll~~~ 158 (214)
T PF04344_consen 93 DEFRELAHETDAFLQQVEENAQQLRAQLTEIMMAQDFQDLTGQRIKKVVNLLQEVEERLVQLLVIF 158 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTTT---
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1222223333333333333332 3399999999999999999888766655543
No 185
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=60.58 E-value=80 Score=24.71 Aligned_cols=37 Identities=14% Similarity=0.276 Sum_probs=16.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHH
Q 021664 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVN 163 (309)
Q Consensus 127 s~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~kld 163 (309)
.++...+...+.++.+....+|.++....+.+-.-|+
T Consensus 20 ~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~ 56 (127)
T smart00502 20 EDALKQLISIIQEVEENAADVEAQIKAAFDELRNALN 56 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444443
No 186
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=59.93 E-value=53 Score=28.02 Aligned_cols=15 Identities=7% Similarity=0.302 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhcC
Q 021664 61 LLAEVSSVQQELSHV 75 (309)
Q Consensus 61 L~aQV~~LaqEl~~L 75 (309)
+..+++.+...++.|
T Consensus 31 ~~~~~~~~~~~~~~l 45 (229)
T PF03114_consen 31 LEEKFKQLEESIKKL 45 (229)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777888888888777
No 187
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=59.79 E-value=42 Score=28.23 Aligned_cols=29 Identities=21% Similarity=0.424 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 021664 123 RRSLSDACNSVARQLEDVYSSISAAQRQL 151 (309)
Q Consensus 123 KRnms~Av~sv~KqLeqVs~sL~~aKrhL 151 (309)
||++-++++.+.+||.+.++.|.+-|+++
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~ 31 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQL 31 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555544444
No 188
>COG3165 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.78 E-value=33 Score=32.27 Aligned_cols=66 Identities=24% Similarity=0.384 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH--HHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 021664 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE--VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (309)
Q Consensus 139 qVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~e--V~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (309)
.+..++....|.+++-+..+...+ .+.|-|| +.-=+..+..+-+|++.+++-|.-||.||+++|.|
T Consensus 134 ~~~~~l~~~~~~l~~~~~~~q~~~------Ae~iTEE~r~~v~~~ela~f~~evd~lr~~~~rL~~RL~rLe~k 201 (204)
T COG3165 134 SVVRALRSGSRFLKHGLKQLQRNL------AEAITEEWRMAVGPLELADFAEEVDALRDAVERLEARLERLERK 201 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHhcchhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555554333222 2223333 22234567889999999999999999999999976
No 189
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=59.63 E-value=1.2e+02 Score=28.44 Aligned_cols=83 Identities=17% Similarity=0.282 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHH---HHHHhHhhhhhhHHHHHHHHHHHHHH--HHHhhhchhhhhhhHHHHHHHH
Q 021664 123 RRSLSDACNSVARQLEDVYSSISAAQR---QLSSKITSVDRDVNKIVEISQATQEE--VTILRGRSKLIGDEFQSVRDIV 197 (309)
Q Consensus 123 KRnms~Av~sv~KqLeqVs~sL~~aKr---hLsqRI~~vD~klde~~eis~~i~~e--V~~v~~dl~~ig~Dv~~v~~~V 197 (309)
+.++.+.+...-++++++.+.+..-|+ .|.++|..+..+++..++.....+-. |...-+..+. ++.+..+.
T Consensus 94 ~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~-~sa~~~fe--- 169 (225)
T COG1842 94 KQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSS-SSAMAAFE--- 169 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhhHHHHH---
Q ss_pred HHHHHHHHHhhhh
Q 021664 198 QTLESKLIEIEGK 210 (309)
Q Consensus 198 ~~Le~Ki~~ie~k 210 (309)
-+|.|++++|..
T Consensus 170 -r~e~kiee~ea~ 181 (225)
T COG1842 170 -RMEEKIEEREAR 181 (225)
T ss_pred -HHHHHHHHHHHH
No 190
>PF09748 Med10: Transcription factor subunit Med10 of Mediator complex; InterPro: IPR019145 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med10 is one of the protein subunits of the Mediator complex, tethered to Med14 (Rgr1) protein. Med10 specifically mediates basal-level HIS4 transcription via Gcn4. In addition, there is a putative requirement for Med10 in Bas2-mediated transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=59.54 E-value=87 Score=26.77 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=33.3
Q ss_pred HHHHHHHHHhHHHHHHHHH-----HHHHHHHHhHhhhhhhHHHHHHHHHH
Q 021664 127 SDACNSVARQLEDVYSSIS-----AAQRQLSSKITSVDRDVNKIVEISQA 171 (309)
Q Consensus 127 s~Av~sv~KqLeqVs~sL~-----~aKrhLsqRI~~vD~klde~~eis~~ 171 (309)
++.+.++-..|-++.-.+. ..+..|.+||+.+...|++..++...
T Consensus 2 e~~l~~~i~~l~el~~~v~d~~~~~s~~~L~~ki~~lv~~L~~l~~~~~~ 51 (128)
T PF09748_consen 2 EQQLEDVIQSLYELGVIVSDFQGPPSQEALNQKINQLVTSLQELDKLAQQ 51 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455555555555555554 56889999999999999999888887
No 191
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=59.26 E-value=44 Score=27.65 Aligned_cols=19 Identities=21% Similarity=0.616 Sum_probs=11.2
Q ss_pred HHHHhhhheeeEEecccCc
Q 021664 97 IVVIVAVGYGYVWWKGWKL 115 (309)
Q Consensus 97 ~a~iGavGYgYmwWKGws~ 115 (309)
++++.+.-+||+||-.+.+
T Consensus 9 l~~lvl~L~~~l~~qs~~i 27 (110)
T PF10828_consen 9 LAVLVLGLGGWLWYQSQRI 27 (110)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455667788766543
No 192
>PLN02678 seryl-tRNA synthetase
Probab=59.03 E-value=39 Score=34.81 Aligned_cols=63 Identities=11% Similarity=0.195 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 021664 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (309)
Q Consensus 144 L~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (309)
+-.-+|.+..+++.+..+ .++++++|... ..-.++.+.+..++..+.+-+..||.++.+++.+
T Consensus 38 ld~~~r~l~~~~e~lr~e---rN~~sk~I~~~-k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~ 100 (448)
T PLN02678 38 LDKEWRQRQFELDSLRKE---FNKLNKEVAKL-KIAKEDATELIAETKELKKEITEKEAEVQEAKAA 100 (448)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-hhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777777666654 55566666541 1222333334444444444444444555544444
No 193
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=58.89 E-value=48 Score=31.90 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHH
Q 021664 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEIS 169 (309)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis 169 (309)
.|..-..-+..+|+.+...|....+..+++...|...+....+..
T Consensus 3 ~l~~l~~pl~e~l~~~~~~l~~~~~~~~~~~~~L~~~l~~l~~~~ 47 (304)
T PF02646_consen 3 QLEQLLKPLKEQLEKFEKRLEESFEQRSEEFGSLKEQLKQLSEAN 47 (304)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555555555555555555555555555554444433
No 194
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=58.84 E-value=50 Score=32.78 Aligned_cols=51 Identities=22% Similarity=0.527 Sum_probs=27.8
Q ss_pred hhHHHHHHhhhheeeEE-----ecccCcCcchhhhhhhHHHHHHHHHHhHHHHHHHHHHH
Q 021664 93 KYGVIVVIVAVGYGYVW-----WKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAA 147 (309)
Q Consensus 93 ~y~l~a~iGavGYgYmw-----WKGws~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~a 147 (309)
.+|++.++.-+|||-+- |+.-.- |-..+.+++.......++|+.-+.+...
T Consensus 167 ~~Gl~l~i~~~g~Glv~iP~~l~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 222 (471)
T PF04791_consen 167 FWGLFLFIILLGYGLVAIPRDLWRSSNS----YFRAAKLEDEAAEAKEKLDDIIEKLRRL 222 (471)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHhccc----cchhhhhcchhHHHHHHHHHHHHHHHHH
Confidence 56665566678888643 664322 4444445555555555555555444444
No 195
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=58.81 E-value=9.8 Score=40.25 Aligned_cols=62 Identities=11% Similarity=0.255 Sum_probs=47.5
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHH-------HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021664 120 FATRRSLSDACNSVARQLEDVYSSIS-------AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG 181 (309)
Q Consensus 120 fVTKRnms~Av~sv~KqLeqVs~sL~-------~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~ 181 (309)
=|-+++=.+|++.++++|..+.+-.. ..=.++.+||+++++++|+...=.-.-+.|+-.+-+
T Consensus 363 AAD~kSTQ~aid~it~kvN~iiek~n~~fe~i~~ef~~ve~Ri~~l~~~v~d~~~d~wsynaELlVlle 431 (550)
T PF00509_consen 363 AADLKSTQKAIDQITKKVNSIIEKMNKQFEQIDKEFNEVEKRIDNLEKKVDDKIADVWSYNAELLVLLE 431 (550)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHTTTCEEEECSCSSSTTGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHhhhccchhhhcccHHHHHHhc
Confidence 36789999999999999998887652 233468899999999999987766666666544433
No 196
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=58.19 E-value=1.1e+02 Score=27.50 Aligned_cols=75 Identities=13% Similarity=0.208 Sum_probs=35.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHH
Q 021664 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (309)
Q Consensus 130 v~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki 204 (309)
.+.+.+.|+.+.+.+..=+.|...=+..|.+=-+++..=....+..+.++..-+..-+.++..++.-+..+.++|
T Consensus 105 ~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I 179 (184)
T PF05791_consen 105 KEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEI 179 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444555555555555555555566666554444444433
No 197
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=58.12 E-value=26 Score=37.31 Aligned_cols=20 Identities=20% Similarity=0.155 Sum_probs=8.2
Q ss_pred hhhchhhhhhhHHHHHHHHH
Q 021664 179 LRGRSKLIGDEFQSVRDIVQ 198 (309)
Q Consensus 179 v~~dl~~ig~Dv~~v~~~V~ 198 (309)
+...++....+.+.+++.+.
T Consensus 390 le~~l~~~~~~~~~L~~~~~ 409 (656)
T PRK06975 390 LDGKLADAQSAQQALEQQYQ 409 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444
No 198
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=58.00 E-value=22 Score=27.03 Aligned_cols=8 Identities=0% Similarity=0.360 Sum_probs=2.9
Q ss_pred hhhhhhHH
Q 021664 156 TSVDRDVN 163 (309)
Q Consensus 156 ~~vD~kld 163 (309)
+.+..++.
T Consensus 3 ~elEn~~~ 10 (55)
T PF05377_consen 3 DELENELP 10 (55)
T ss_pred HHHHHHHH
Confidence 33333333
No 199
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=57.88 E-value=1.4e+02 Score=32.90 Aligned_cols=100 Identities=11% Similarity=0.084 Sum_probs=85.7
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHH
Q 021664 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (309)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~K 203 (309)
..+.++|..+.++++-+-....+..+...++.....+++-+...+...-..-..++...+-....++..+|--+..++..
T Consensus 115 ~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke 194 (716)
T KOG4593|consen 115 EALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKE 194 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHhhhhhhhHhHHHHHHHH
Q 021664 204 LIEIEGKQDITTLGVKKLCD 223 (309)
Q Consensus 204 i~~ie~kQd~Tn~GV~~LC~ 223 (309)
+++....=+-.+.-+..+-+
T Consensus 195 ~~~~~~ql~~~~q~~~~~~~ 214 (716)
T KOG4593|consen 195 LDRQHKQLQEENQKIQELQA 214 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88776655555554444433
No 200
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=57.81 E-value=86 Score=31.64 Aligned_cols=67 Identities=16% Similarity=0.253 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc-hhhhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Q 021664 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR-SKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (309)
Q Consensus 143 sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~d-l~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (309)
.+-..+|++..+++++. .+.++++++|+.... -.++ .+.+..++..+++-+..||.++..++.+.+.
T Consensus 34 ~ld~~~r~~~~~~~~l~---~erN~~sk~i~~~~~-~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 34 ALDDERKKLLSEIEELQ---AKRNELSKQIGKAKG-QKKDKIEEIKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777765 567777888866321 1123 4445555555665555666666666555443
No 201
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=57.70 E-value=86 Score=29.96 Aligned_cols=76 Identities=11% Similarity=0.098 Sum_probs=60.2
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHH
Q 021664 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRA 225 (309)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~ 225 (309)
++.-++|.++.+|-....|...+.++..++..|..+.+-=+...-.+=.+|+..|..+...-+.+..|+..|-++.
T Consensus 55 e~~ey~d~l~~~l~~ieki~~Rv~kr~~~l~~d~~e~~~~f~~ws~lE~~l~~~L~~~a~~~~~~s~~l~~l~~~~ 130 (240)
T cd07667 55 AIGDYLDTFALKLGTIDRIAQRIIKEEIEYLVELREYGPVYSTWSGLEGELAEPLEGVSACIGNCSTALEELTEDM 130 (240)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567889999999999999999999988888877777776666666667788888888777777777777776644
No 202
>PLN03184 chloroplast Hsp70; Provisional
Probab=57.67 E-value=1.2e+02 Score=32.57 Aligned_cols=67 Identities=10% Similarity=0.274 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHHHH-----HHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021664 141 YSSISAAQRQLSSKITSVDRDVNKI-----VEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (309)
Q Consensus 141 s~sL~~aKrhLsqRI~~vD~klde~-----~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (309)
......+|.+|..-|..+.++|++. .+-.+.+++.+++.++=|. ++|.+.+++....|+..+..++.
T Consensus 561 ~~~~~eakN~lE~~iy~~r~~l~e~~~~~~~eer~~l~~~l~~~e~wL~--~~d~~~ik~~~~~l~~~l~~l~~ 632 (673)
T PLN03184 561 KRDAVDTKNQADSVVYQTEKQLKELGDKVPADVKEKVEAKLKELKDAIA--SGSTQKMKDAMAALNQEVMQIGQ 632 (673)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666666666432 1112233333444444433 23445555555555555555443
No 203
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=57.59 E-value=62 Score=28.16 Aligned_cols=18 Identities=22% Similarity=0.473 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 021664 191 QSVRDIVQTLESKLIEIE 208 (309)
Q Consensus 191 ~~v~~~V~~Le~Ki~~ie 208 (309)
.++..-+..|+.||..+.
T Consensus 119 ~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 119 EELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333334444444333
No 204
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=57.57 E-value=90 Score=25.00 Aligned_cols=54 Identities=4% Similarity=0.129 Sum_probs=31.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh
Q 021664 133 VARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI 186 (309)
Q Consensus 133 v~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~i 186 (309)
+...|+.-.+.|...-....+|++.+.....+-.++.+.|+.++.-+...+..+
T Consensus 23 ~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~l 76 (88)
T PF10241_consen 23 TLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSL 76 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555566666666666666666666666665555554433
No 205
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=56.66 E-value=1.5e+02 Score=34.97 Aligned_cols=45 Identities=7% Similarity=0.062 Sum_probs=18.9
Q ss_pred hhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHH
Q 021664 179 LRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (309)
Q Consensus 179 v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~ 223 (309)
+++-+..+..|+...++.+...+......|.+-.-++.-+..|=.
T Consensus 1582 a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~ 1626 (1758)
T KOG0994|consen 1582 AQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELET 1626 (1758)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444444433
No 206
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=56.48 E-value=1.2e+02 Score=32.69 Aligned_cols=107 Identities=9% Similarity=0.122 Sum_probs=66.2
Q ss_pred cchhhhhhhHHH----HHHHHHHhH---HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhh
Q 021664 117 DMMFATRRSLSD----ACNSVARQL---EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE 189 (309)
Q Consensus 117 DlMfVTKRnms~----Av~sv~KqL---eqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~D 189 (309)
|+|+---..|+. +-..+++-. +...+.+...-.||.|.+|.-|.+++++..+...++.++..=.+.++.-..+
T Consensus 385 ~~~~~~~~k~~~~~~~~~~~i~~~~~~~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~ 464 (607)
T KOG0240|consen 385 DFSLKEEAKMSAILSEEEMSITKLKGSLEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRL 464 (607)
T ss_pred hhhHHHHHHhhhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 456555555553 333444443 5788889999999999999999999999999988888876655555444444
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHH
Q 021664 190 FQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (309)
Q Consensus 190 v~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~ 223 (309)
.+.++.-.+.+-.-....+..+.-......-||.
T Consensus 465 ~e~~q~e~~~~Q~~~e~~~~e~~e~~~al~el~~ 498 (607)
T KOG0240|consen 465 YEDIQQELSEIQEENEAAKDEVKEVLTALEELAV 498 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443333333233333334444444555554
No 207
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=56.33 E-value=1e+02 Score=25.17 Aligned_cols=67 Identities=15% Similarity=0.215 Sum_probs=43.2
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHH
Q 021664 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (309)
Q Consensus 155 I~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (309)
++.|..|+.+..+.+...+-||.+++++=.....+++.++.--..|+.+-..+..-|+.=..-+..|
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666667777777777777777777666666666666666666666666655555554444444
No 208
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=56.22 E-value=84 Score=30.51 Aligned_cols=70 Identities=20% Similarity=0.185 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHh---HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 021664 141 YSSISAAQRQLSSK---ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (309)
Q Consensus 141 s~sL~~aKrhLsqR---I~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (309)
+..|+..-||+.+. |..-|+.|=+.-|.+-..-+||.+++.|-.+|.++++.|-.--..||.-|+.+|.+
T Consensus 84 s~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k 156 (254)
T KOG2196|consen 84 SLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETK 156 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777887765 55668889999999999999999999999999999999988888888888877765
No 209
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=56.17 E-value=63 Score=27.91 Aligned_cols=55 Identities=13% Similarity=0.233 Sum_probs=35.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhHhhhh-------hhHHHHHHHHHHHHHHHHHhhhchhh
Q 021664 131 NSVARQLEDVYSSISAAQRQLSSKITSVD-------RDVNKIVEISQATQEEVTILRGRSKL 185 (309)
Q Consensus 131 ~sv~KqLeqVs~sL~~aKrhLsqRI~~vD-------~klde~~eis~~i~~eV~~v~~dl~~ 185 (309)
+.+..|++.+...+...|+++.+=-|+.| .++||..+-...+...+..+++|++.
T Consensus 4 a~~~~q~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVse 65 (112)
T PF07439_consen 4 AGLHQQLGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVSE 65 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 45778888888888888888876665544 34555555555554445444444443
No 210
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=56.09 E-value=1e+02 Score=24.61 Aligned_cols=56 Identities=14% Similarity=0.333 Sum_probs=26.4
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh---hhhHHHHHHHHHHHHHHHHHhh
Q 021664 146 AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI---GDEFQSVRDIVQTLESKLIEIE 208 (309)
Q Consensus 146 ~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~i---g~Dv~~v~~~V~~Le~Ki~~ie 208 (309)
.++++|..-|+.+.+.|++..+.... +..+=++| ..|+..=++.|..++.+|..|+
T Consensus 39 ~~~~eL~~~l~~ie~~L~DL~~aV~i-------ve~np~kF~l~~~Ei~~Rr~fv~~~~~~i~~~k 97 (97)
T PF09177_consen 39 WLKRELRNALQSIEWDLEDLEEAVRI-------VEKNPSKFNLSEEEISRRRQFVSAIRNQIKQMK 97 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHCCHHHHT-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhCccccCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455555555555555444433332 22222232 3344555555666666666553
No 211
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=56.07 E-value=62 Score=26.36 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=9.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Q 021664 129 ACNSVARQLEDVYSSISAAQRQLSS 153 (309)
Q Consensus 129 Av~sv~KqLeqVs~sL~~aKrhLsq 153 (309)
.++.+-+....|-+.|..+...|+.
T Consensus 48 ~~~~~~~~~~~vi~~L~~a~~~l~~ 72 (113)
T PF02520_consen 48 QKEEVRKNVTAVISNLSSAFAKLSA 72 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 212
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=55.98 E-value=59 Score=32.86 Aligned_cols=64 Identities=14% Similarity=0.282 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 021664 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (309)
Q Consensus 144 L~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (309)
+-..+|.|..+++++..+ .++++++|+... .-+++.+.+..++..+++-+..||.++..++.+-
T Consensus 33 ld~~~r~l~~~~~~lr~~---rn~~sk~i~~~~-~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 96 (425)
T PRK05431 33 LDEERRELQTELEELQAE---RNALSKEIGQAK-RKGEDAEALIAEVKELKEEIKALEAELDELEAEL 96 (425)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHh-hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677787777777654 556666665421 1122444455555566655555556665555543
No 213
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=55.92 E-value=66 Score=30.98 Aligned_cols=21 Identities=10% Similarity=0.202 Sum_probs=10.0
Q ss_pred HHhhhchhhhhhhHHHHHHHH
Q 021664 177 TILRGRSKLIGDEFQSVRDIV 197 (309)
Q Consensus 177 ~~v~~dl~~ig~Dv~~v~~~V 197 (309)
.+...++.++..|+.++..+.
T Consensus 44 ~~~~~~~~~l~~~~~~L~~aL 64 (304)
T PF02646_consen 44 SEANGEIQQLSQEASNLTSAL 64 (304)
T ss_pred HHhhhHHHHHHHHHHHHHHHH
Confidence 333344455555555555443
No 214
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=55.87 E-value=76 Score=32.89 Aligned_cols=107 Identities=14% Similarity=0.249 Sum_probs=65.9
Q ss_pred cCcchhhhhhhHHH----HHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhH
Q 021664 115 LPDMMFATRRSLSD----ACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEF 190 (309)
Q Consensus 115 ~SDlMfVTKRnms~----Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv 190 (309)
.-|......+.|.. ....+...|++++..|..+.+.|....+.++-.=++..+ +++....++.-....|.++
T Consensus 249 ~~~~l~~~~~~l~~~~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~e----le~RL~~l~~LkrKyg~s~ 324 (563)
T TIGR00634 249 LLEGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNE----IEERLAQIKRLKRKYGASV 324 (563)
T ss_pred HHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH----HHHHHHHHHHHHHHhCCCH
Confidence 44555666666544 667788888888889999998888888877643322222 4444445555445556666
Q ss_pred HHHHHHHHHHHHHHHHhhh----------hhhhHhHHHHHHHHHH
Q 021664 191 QSVRDIVQTLESKLIEIEG----------KQDITTLGVKKLCDRA 225 (309)
Q Consensus 191 ~~v~~~V~~Le~Ki~~ie~----------kQd~Tn~GV~~LC~f~ 225 (309)
+.+......++.+++.++. ..+-...-+..+|+-+
T Consensus 325 e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~L 369 (563)
T TIGR00634 325 EEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVAL 369 (563)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666665544 4444444555555444
No 215
>PRK11032 hypothetical protein; Provisional
Probab=55.79 E-value=57 Score=29.41 Aligned_cols=51 Identities=14% Similarity=0.343 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHH----hhhchhhhhhhH
Q 021664 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI----LRGRSKLIGDEF 190 (309)
Q Consensus 137 LeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~----v~~dl~~ig~Dv 190 (309)
|++|.+.|...++.|..=|+...+.+. +..+.+++|+.. +|+||+++...+
T Consensus 12 l~~v~~~l~~~~~~l~~~ve~a~~~~~---~~~elT~dEl~lv~~ylkRDL~ef~~~~ 66 (160)
T PRK11032 12 VASLTERLRNGERDIDALVESARKRVD---AAGELTRDEVDLITRAVRRDLEEFARSY 66 (160)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHH---HHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666555544444444444 444456666543 567777776643
No 216
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=55.78 E-value=89 Score=29.27 Aligned_cols=85 Identities=15% Similarity=0.194 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHH-HHHHHHhHhhhhhhHHHH-------HHHHHHHHHH--H----HHhhhchhhhhhh
Q 021664 124 RSLSDACNSVARQLEDVYSSISAA-QRQLSSKITSVDRDVNKI-------VEISQATQEE--V----TILRGRSKLIGDE 189 (309)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~a-KrhLsqRI~~vD~klde~-------~eis~~i~~e--V----~~v~~dl~~ig~D 189 (309)
.+..+.+..+.++++++.+.+-.. +++...||-++.+.+-.. .++...+... . .+.+..+..+.++
T Consensus 145 d~~~~~l~~l~~~~~~le~~l~~~~~~~~l~~l~~l~~~l~~l~~~l~~~~~vl~~l~~~~~~~~~~~~~~~~~~dv~~~ 224 (318)
T TIGR00383 145 DSYFPLLENIEDELEELEDEIISGPTSTLMDEILSLRTELLALRRSLWPLRDVLNFLLRKTHLPIQTEEVREYLRDIYDH 224 (318)
T ss_pred hccHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHH
Confidence 345567778888888887776442 334444455544444433 3333333221 0 2223334445556
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 021664 190 FQSVRDIVQTLESKLIEIE 208 (309)
Q Consensus 190 v~~v~~~V~~Le~Ki~~ie 208 (309)
++.+.+++..+..+++.+.
T Consensus 225 ~~~l~~~~~~~~e~l~~l~ 243 (318)
T TIGR00383 225 ILSLLEMIETYRELLSSLM 243 (318)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776654
No 217
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=55.69 E-value=3.8 Score=35.01 Aligned_cols=38 Identities=11% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Q 021664 176 VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (309)
Q Consensus 176 V~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (309)
+......+...+.-+..+...+..|..|+..++..++.
T Consensus 47 ~~~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~~~~~~ 84 (138)
T PF06009_consen 47 ISDANKALDDANNSVKNLEQLAPDLLDKLKPLENLSEN 84 (138)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33333333444444555555566666666666666655
No 218
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=55.57 E-value=1.3e+02 Score=30.73 Aligned_cols=84 Identities=8% Similarity=0.147 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH---HHHHHhHhhhhh------------------hHHHHHHHHHHHHHHHHHhhhchh
Q 021664 126 LSDACNSVARQLEDVYSSISAAQ---RQLSSKITSVDR------------------DVNKIVEISQATQEEVTILRGRSK 184 (309)
Q Consensus 126 ms~Av~sv~KqLeqVs~sL~~aK---rhLsqRI~~vD~------------------klde~~eis~~i~~eV~~v~~dl~ 184 (309)
-+.++..+-++|+++.+.+++++ ..+.+|+.-++. .+.+..++...+.++..+++....
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDR 148 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666665555444332 334444433322 234455555566666666666666
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhh
Q 021664 185 LIGDEFQSVRDIVQTLESKLIEIEG 209 (309)
Q Consensus 185 ~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (309)
....+++.+++-+..|+.+|..+..
T Consensus 149 ~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 149 EAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6666666666666666666665543
No 219
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=55.53 E-value=1.3e+02 Score=25.60 Aligned_cols=88 Identities=14% Similarity=0.178 Sum_probs=59.2
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHH
Q 021664 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (309)
Q Consensus 121 VTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~L 200 (309)
.+..++.+.|+.|-.=|. -.+.=...+..|..++.+++..++....-.+..++++.+....+.....+...++..+..+
T Consensus 28 ~~~~~~~~vin~i~~Ll~-~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~ 106 (151)
T PF11559_consen 28 ESEDNDVRVINCIYDLLQ-QRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSL 106 (151)
T ss_pred cccccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555444442 2344455677778888888888888777777778888777777777777777777777777
Q ss_pred HHHHHHhhh
Q 021664 201 ESKLIEIEG 209 (309)
Q Consensus 201 e~Ki~~ie~ 209 (309)
+.++.....
T Consensus 107 ~~~~k~~ke 115 (151)
T PF11559_consen 107 EAKLKQEKE 115 (151)
T ss_pred HHHHHHHHH
Confidence 777665544
No 220
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=55.48 E-value=76 Score=23.32 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=21.4
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHH
Q 021664 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT 199 (309)
Q Consensus 155 I~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~ 199 (309)
|++-..-+++..++..+|.+++..=++.|..+...+..+...+..
T Consensus 10 L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~ 54 (66)
T PF12352_consen 10 LQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPK 54 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 334444455555555555555544444444444444444433333
No 221
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.47 E-value=1.4e+02 Score=30.35 Aligned_cols=68 Identities=4% Similarity=0.084 Sum_probs=45.5
Q ss_pred cchhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhh
Q 021664 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL 185 (309)
Q Consensus 117 DlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ 185 (309)
+||++-+.-|.+.-+-. ..|..-+|.|+.-++||-.-+++|+.++-..++-+.-.++.|.|+.+|.++
T Consensus 218 klR~r~eeeme~~~aeq-~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n 285 (365)
T KOG2391|consen 218 KLRRRREEEMERLQAEQ-ESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAEN 285 (365)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 56666666666554433 346666777777777777777777777777777777777777777776665
No 222
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=55.41 E-value=1.7e+02 Score=26.84 Aligned_cols=61 Identities=10% Similarity=0.199 Sum_probs=34.7
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHh
Q 021664 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (309)
Q Consensus 147 aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (309)
=++++...|..++.|+.+.++-...++.+..+....+++...+++.+++-+...|-+-.++
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666665555555555555555555556666665555555554443
No 223
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=55.40 E-value=1e+02 Score=28.82 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=22.8
Q ss_pred HhhhchhhhhhhHHHHHHHHHHHHHHHH
Q 021664 178 ILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (309)
Q Consensus 178 ~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~ 205 (309)
....++..|.+|++.|.+=|.+||.=|.
T Consensus 157 ~~~~~l~~v~~Dl~~ie~QV~~Le~~L~ 184 (195)
T PF12761_consen 157 KSGKNLKSVREDLDTIEEQVDGLESHLS 184 (195)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888899999999999999987664
No 224
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=55.28 E-value=1.3e+02 Score=25.74 Aligned_cols=59 Identities=14% Similarity=0.219 Sum_probs=38.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhH
Q 021664 156 TSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT 214 (309)
Q Consensus 156 ~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~T 214 (309)
+.|.....+.-+-++.|..|.-.++..+..+...-...-.++..+..+|.+|..=|+-+
T Consensus 36 d~ln~~v~~~~~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~~~~~~~~~LKEiGDveNWa 94 (121)
T PF06320_consen 36 DHLNSRVSEAYENQKKIEKEAKQLQRNTAKLAKQTDQWLKLVDSFNDALKEIGDVENWA 94 (121)
T ss_pred HHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 33444445556666777777777777777777777777777777777777776555544
No 225
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=55.04 E-value=65 Score=37.36 Aligned_cols=83 Identities=18% Similarity=0.227 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhH
Q 021664 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTL 216 (309)
Q Consensus 137 LeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~ 216 (309)
++.-...+...-+|+++.|..+.+++++-..-...+.+.....+..+.+...+++++...-..++.+++.+..+=+....
T Consensus 396 ~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~ 475 (1293)
T KOG0996|consen 396 LEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETE 475 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33444456666677777787777777777776667777777777777777777888877777777777777666555555
Q ss_pred HHH
Q 021664 217 GVK 219 (309)
Q Consensus 217 GV~ 219 (309)
|+.
T Consensus 476 ~~~ 478 (1293)
T KOG0996|consen 476 GIR 478 (1293)
T ss_pred hhH
Confidence 543
No 226
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=55.02 E-value=1.6e+02 Score=26.46 Aligned_cols=58 Identities=7% Similarity=0.191 Sum_probs=35.9
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 021664 119 MFATRRSLSDACNSVARQLEDVYSSI-SAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (309)
Q Consensus 119 MfVTKRnms~Av~sv~KqLeqVs~sL-~~aKrhLsqRI~~vD~klde~~eis~~i~~eV 176 (309)
+..--....+++..+.++++++.+.+ ...++...++|-.+...+..........++-+
T Consensus 116 l~~~~~~~~~~l~~l~~~l~~le~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~l 174 (292)
T PF01544_consen 116 LDEIVDDYFEVLEELEDELDELEDELDDRPSNELLRELFDLRRELSRLRRSLSPLREVL 174 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHTTTHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34445666777888888888888887 44555555666666555555554444444444
No 227
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=54.97 E-value=28 Score=31.74 Aligned_cols=32 Identities=16% Similarity=0.196 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhchhhhhhhHHH
Q 021664 161 DVNKIVEISQATQEEVTILRGRSKLIGDEFQS 192 (309)
Q Consensus 161 klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~ 192 (309)
+|.++.+--.+|.+.|.+..++|+.|++++..
T Consensus 129 ~L~d~Iv~~~~i~e~IKd~de~L~~I~d~iK~ 160 (163)
T PF03233_consen 129 KLKDNIVTEKLIEELIKDFDERLKEIRDKIKK 160 (163)
T ss_pred hHhhhccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555555555555554443
No 228
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=54.66 E-value=28 Score=34.62 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHhhhh
Q 021664 194 RDIVQTLESKLIEIEGK 210 (309)
Q Consensus 194 ~~~V~~Le~Ki~~ie~k 210 (309)
...+..|+.|++.+|..
T Consensus 171 ~k~i~~l~~kl~DlEnr 187 (370)
T PF02994_consen 171 EKRIKKLEDKLDDLENR 187 (370)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 33344444555544433
No 229
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=54.54 E-value=1.7e+02 Score=30.47 Aligned_cols=80 Identities=20% Similarity=0.378 Sum_probs=50.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH--HHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHH
Q 021664 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV--EISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (309)
Q Consensus 127 s~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~--eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki 204 (309)
++.++.+.++-.++...+..+ ++|..|.+.+.+.+++.. ++...++.++.+.-.++..+..+++....+...|+ +|
T Consensus 28 ~eV~~~I~~~y~df~~~~~~~-~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~L~~eL~~~~~~l~~L~-~L 105 (593)
T PF06248_consen 28 EEVHSMINKKYSDFSPSLQSA-KDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQELKRELEENEQLLEVLE-QL 105 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 334444445555555444444 356777777777774432 36677788888888888888888888777766665 44
Q ss_pred HHhh
Q 021664 205 IEIE 208 (309)
Q Consensus 205 ~~ie 208 (309)
.+++
T Consensus 106 ~~i~ 109 (593)
T PF06248_consen 106 QEID 109 (593)
T ss_pred HHHH
Confidence 4333
No 230
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=54.47 E-value=86 Score=32.52 Aligned_cols=44 Identities=11% Similarity=0.327 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHH---HhHhhhhhhHHHHHH
Q 021664 124 RSLSDACNSVARQLEDVYSSISAAQRQLS---SKITSVDRDVNKIVE 167 (309)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLs---qRI~~vD~klde~~e 167 (309)
..+.+.+.++--+|+.+...|..-...+. .|++.+..++.....
T Consensus 269 ~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~ 315 (563)
T TIGR00634 269 RELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKR 315 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 56666677777777777777766554443 344444444444444
No 231
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=54.40 E-value=35 Score=33.49 Aligned_cols=74 Identities=14% Similarity=0.128 Sum_probs=51.4
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHH
Q 021664 145 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKK 220 (309)
Q Consensus 145 ~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~ 220 (309)
-.=|.-|...||.|-++|+++.|.-.+.+.+..+-.+++++....++.++.-+..|-..|.. -.+-+..+|+..
T Consensus 104 DNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~--rdeli~khGlVl 177 (302)
T PF09738_consen 104 DNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQ--RDELIEKHGLVL 177 (302)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHCCeee
Confidence 34478899999999999999999999999998777666666666666666555555555422 223344555543
No 232
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=54.35 E-value=1.7e+02 Score=26.65 Aligned_cols=84 Identities=13% Similarity=0.155 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhHh-hhhhhHHHHHHHHHHHHHH---HHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHH
Q 021664 142 SSISAAQRQLSSKIT-SVDRDVNKIVEISQATQEE---VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLG 217 (309)
Q Consensus 142 ~sL~~aKrhLsqRI~-~vD~klde~~eis~~i~~e---V~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~G 217 (309)
++|+.||++=..|=- .-.-.||++...-+..++. ...++...+....++..++..+..|+.++..++.++..-..-
T Consensus 61 ~~i~~AKkqRk~~~~~~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eD 140 (161)
T TIGR02894 61 EAIELAKKQRKELKREAGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEED 140 (161)
T ss_pred HHHHHHHHHHhccccCcccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556655443321 0223356666655555543 455555666677777888888888888888887766655555
Q ss_pred HHHHHHHH
Q 021664 218 VKKLCDRA 225 (309)
Q Consensus 218 V~~LC~f~ 225 (309)
-..|...+
T Consensus 141 Y~~L~~Im 148 (161)
T TIGR02894 141 YQTLIDIM 148 (161)
T ss_pred HHHHHHHH
Confidence 55555444
No 233
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=54.31 E-value=80 Score=22.76 Aligned_cols=15 Identities=33% Similarity=0.468 Sum_probs=5.7
Q ss_pred HHHHHHHHHHhHhhh
Q 021664 144 ISAAQRQLSSKITSV 158 (309)
Q Consensus 144 L~~aKrhLsqRI~~v 158 (309)
|...-+.|...++.+
T Consensus 23 l~~~~~~l~~~~~~l 37 (86)
T PF06013_consen 23 LQSQLQQLESSIDSL 37 (86)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333334333
No 234
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=54.31 E-value=71 Score=37.06 Aligned_cols=80 Identities=15% Similarity=0.238 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHH-HHHHHHHHHHHhhhhhhhHhHHHHHH
Q 021664 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD-IVQTLESKLIEIEGKQDITTLGVKKL 221 (309)
Q Consensus 143 sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~-~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (309)
.|...-+++..+...+++.+.++.+....++++...++.++++|...+..++. .+. ++.|+..+..+-+.-..-+.+.
T Consensus 960 ~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId-~~~K~e~~~~~l~e~~~~~~~~ 1038 (1293)
T KOG0996|consen 960 DLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAERID-IENKLEAINGELNEIESKIKQP 1038 (1293)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHhhhhhH
Confidence 44445556667777788888888888888999999999888888888888887 555 8888887777766666666665
Q ss_pred HH
Q 021664 222 CD 223 (309)
Q Consensus 222 C~ 223 (309)
-.
T Consensus 1039 ~k 1040 (1293)
T KOG0996|consen 1039 EK 1040 (1293)
T ss_pred HH
Confidence 43
No 235
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=54.23 E-value=51 Score=33.48 Aligned_cols=68 Identities=10% Similarity=0.078 Sum_probs=39.5
Q ss_pred CCCCCC--chhHHHHHHhhhheeeEEecccCcCcchhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHH
Q 021664 86 GSGTGA--KKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVN 163 (309)
Q Consensus 86 ssg~gg--~~y~l~a~iGavGYgYmwWKGws~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~kld 163 (309)
+.|... -...+++++|+-||-|.+..-- .....-+.+..+|+.......+.+..|.+.+..++.++.
T Consensus 34 ~~g~~l~~~aili~la~g~g~y~~~~qq~~-----------~~~~~~~~L~~ql~~~~~~~~~~~~~l~~~~~~~~~~l~ 102 (390)
T PRK10920 34 RTGLVLSAVAIAIALAAGAGLYYHGKQQAQ-----------NQTATNDALANQLTALQKAQESQKQELEGILKQQAKALD 102 (390)
T ss_pred CccHHHHHHHHHHHHHHhhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346543 3788888999999999999732 123444555555555555544444444444444444444
Q ss_pred H
Q 021664 164 K 164 (309)
Q Consensus 164 e 164 (309)
+
T Consensus 103 ~ 103 (390)
T PRK10920 103 Q 103 (390)
T ss_pred H
Confidence 3
No 236
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=54.07 E-value=94 Score=32.68 Aligned_cols=39 Identities=13% Similarity=0.225 Sum_probs=20.8
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 021664 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQ 173 (309)
Q Consensus 135 KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~ 173 (309)
++|++-++-+.++|+-+.+|++.++.|++++..--+..+
T Consensus 364 ~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 364 DSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER 402 (493)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666666666655555555544433333
No 237
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=53.79 E-value=1.4e+02 Score=28.81 Aligned_cols=57 Identities=12% Similarity=0.328 Sum_probs=35.4
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHH
Q 021664 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT 177 (309)
Q Consensus 121 VTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~ 177 (309)
+.|..+-++-..++.++.+.++.|...++.....|+..-++++...+-...+.+++.
T Consensus 127 ~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~lN~~I~ 183 (322)
T TIGR02492 127 ALRQAVLESAQALANSFNQTSNELQDLRKGINAEIKSAVTEINSLLKQIASLNKEIQ 183 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777777666665554444444444444444443
No 238
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=53.76 E-value=1.7e+02 Score=31.30 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=16.0
Q ss_pred HHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Q 021664 176 VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (309)
Q Consensus 176 V~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (309)
...+++.+.....-++.-++-+..|..-+..+-..+|.
T Consensus 285 ~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDr 322 (546)
T PF07888_consen 285 NEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDR 322 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444433333
No 239
>PF04778 LMP: LMP repeated region; InterPro: IPR006864 This repeated sequence element is found in the LMP group of surface-located membrane proteins of Mycoplasma hominis. The the number of repeats in the protein affects the tendency of cells to spontaneously aggregate. Agglutination may be an important factor in colonization. Non-agglutinating microorganisms might easily be distributed whereas aggregation might provide a better chance to avoid an antibody response since some of the epitopes may be buried [].
Probab=53.66 E-value=1.1e+02 Score=27.89 Aligned_cols=82 Identities=11% Similarity=0.261 Sum_probs=58.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhHhhhhhhH-----HHHHHHHHHHHHHHHHhhhchhhhhhh----HHHHHHHHHHHHHH
Q 021664 133 VARQLEDVYSSISAAQRQLSSKITSVDRDV-----NKIVEISQATQEEVTILRGRSKLIGDE----FQSVRDIVQTLESK 203 (309)
Q Consensus 133 v~KqLeqVs~sL~~aKrhLsqRI~~vD~kl-----de~~eis~~i~~eV~~v~~dl~~ig~D----v~~v~~~V~~Le~K 203 (309)
+-++|..--..|..||.+|.+.|+.-..-+ +.+.-.-......|+++...|+.|..| +..+++.....+.=
T Consensus 5 l~~kL~D~D~~IqqaK~~L~~ei~kA~q~~~snnt~~mqsa~~sL~~Ki~ei~~kL~~Fn~dKea~F~eLq~tr~~I~eF 84 (157)
T PF04778_consen 5 LDKKLTDNDNEIQQAKTELDKEIQKANQAVASNNTASMQSAKSSLDAKITEITKKLEKFNKDKEAKFNELQQTRKQIDEF 84 (157)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 344555555678888888888888766555 445555566777888888888888765 55667777777777
Q ss_pred HHHhhhhhhhH
Q 021664 204 LIEIEGKQDIT 214 (309)
Q Consensus 204 i~~ie~kQd~T 214 (309)
|.....+++|+
T Consensus 85 i~~~K~NpnY~ 95 (157)
T PF04778_consen 85 INKNKNNPNYA 95 (157)
T ss_pred HhhccCCccHH
Confidence 77777777777
No 240
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.56 E-value=1.5e+02 Score=25.72 Aligned_cols=68 Identities=13% Similarity=0.205 Sum_probs=50.4
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHH
Q 021664 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVK 219 (309)
Q Consensus 152 sqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~ 219 (309)
..|++++..++|+..+|-..==+.|-|=.+.|+.+.+--++++..-...+.+=..+..|.=--|.-.+
T Consensus 28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~ 95 (116)
T KOG0860|consen 28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMR 95 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888888888888777777788888888888888888888887777766666655444443333
No 241
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=53.36 E-value=1.6e+02 Score=28.80 Aligned_cols=86 Identities=7% Similarity=0.125 Sum_probs=52.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhh
Q 021664 133 VARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (309)
Q Consensus 133 v~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (309)
-+.++++.-..+...-+++.++-+.+++-+++.......+.+-+.+.|..+-..-.+++.+..+...-...+.++-....
T Consensus 216 ~~~~l~~~~~~l~~l~~~~~~~~~~l~~~l~~~~~~~~~~~~ll~~~r~~l~~~l~~l~~~~~~~~~~~~~~~~ll~~~p 295 (359)
T COG1463 216 ASDQLDRLLDNLATLTAALAARRDALDDALAALSALAATVNDLLAENRPNLNQALANLRPLATLLVDYLPGLEQLLHGLP 295 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhcc
Confidence 34455555556666667777777777777777777777777777777776665555555555555544444444444433
Q ss_pred hHhHHH
Q 021664 213 ITTLGV 218 (309)
Q Consensus 213 ~Tn~GV 218 (309)
......
T Consensus 296 ~~~~~~ 301 (359)
T COG1463 296 TYAANL 301 (359)
T ss_pred hhhhhh
Confidence 333333
No 242
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=53.25 E-value=53 Score=29.52 Aligned_cols=48 Identities=25% Similarity=0.394 Sum_probs=26.5
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHH
Q 021664 154 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (309)
Q Consensus 154 RI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le 201 (309)
=|+.+...-++.-+|.+..++|...++..|+.+..++..+-.-|..||
T Consensus 7 ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le 54 (159)
T PF05384_consen 7 TIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLE 54 (159)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555556665555555555555555555555555555444
No 243
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=53.25 E-value=1.7e+02 Score=26.26 Aligned_cols=42 Identities=19% Similarity=0.348 Sum_probs=29.8
Q ss_pred HHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhh
Q 021664 171 ATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (309)
Q Consensus 171 ~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (309)
...+++..++..+......+..++.-+..|+.||..+..+.+
T Consensus 95 ~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~ 136 (221)
T PF04012_consen 95 DLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKRE 136 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777777777777777777776655
No 244
>PRK11519 tyrosine kinase; Provisional
Probab=53.09 E-value=2.3e+02 Score=30.45 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 021664 126 LSDACNSVARQLEDVYSSISAAQRQLS 152 (309)
Q Consensus 126 ms~Av~sv~KqLeqVs~sL~~aKrhLs 152 (309)
..++.+=+.+||+++...|..+.+.|.
T Consensus 265 a~~a~~fL~~ql~~l~~~L~~aE~~l~ 291 (719)
T PRK11519 265 ASKSLAFLAQQLPEVRSRLDVAENKLN 291 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777777777776665554
No 245
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=53.07 E-value=54 Score=30.48 Aligned_cols=56 Identities=16% Similarity=0.283 Sum_probs=45.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhHhhh---hhhHHHHHHHHHHHHHHHHHhhhchhhhhh
Q 021664 133 VARQLEDVYSSISAAQRQLSSKITSV---DRDVNKIVEISQATQEEVTILRGRSKLIGD 188 (309)
Q Consensus 133 v~KqLeqVs~sL~~aKrhLsqRI~~v---D~klde~~eis~~i~~eV~~v~~dl~~ig~ 188 (309)
+.-.++|+..++..+|+-|..-|+.+ |+|||.+..++..+.-++.-++.....++.
T Consensus 127 ~~D~~d~l~~el~e~K~~l~k~ie~~l~R~ekl~~lv~~ss~L~~~s~~~~k~akk~n~ 185 (190)
T COG5143 127 IQDKLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLSSILLLSSKMFPKSAKKSNL 185 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44458888899999999999988887 889999999999999988777766555544
No 246
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=53.03 E-value=96 Score=31.72 Aligned_cols=90 Identities=11% Similarity=0.090 Sum_probs=55.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHH-----------HHHHHHhhhchhhhhhhHHHHHHH
Q 021664 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQAT-----------QEEVTILRGRSKLIGDEFQSVRDI 196 (309)
Q Consensus 128 ~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i-----------~~eV~~v~~dl~~ig~Dv~~v~~~ 196 (309)
.+...--+.|++=-+.+....+++..+++.++.++.-...+.+.. ...+.++..-+..++..+..++..
T Consensus 67 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (525)
T TIGR02231 67 RPDPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTE 146 (525)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 444443444555555555566666777777777765555555322 113556666667777777777777
Q ss_pred HHHHHHHHHHhhhhhhhHhHH
Q 021664 197 VQTLESKLIEIEGKQDITTLG 217 (309)
Q Consensus 197 V~~Le~Ki~~ie~kQd~Tn~G 217 (309)
...|+.++..++.+.+....-
T Consensus 147 ~~~~~~~~~~~~~~l~~l~~~ 167 (525)
T TIGR02231 147 DREAERRIRELEKQLSELQNE 167 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 788888887777775554433
No 247
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=52.93 E-value=1.9e+02 Score=33.04 Aligned_cols=102 Identities=17% Similarity=0.201 Sum_probs=76.7
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHH
Q 021664 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (309)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~K 203 (309)
|.+.---+.+++-|-|.-+-+...+++|.--=+.....+.+..+..+-...++.+.......|+.++..-+.-+++++.|
T Consensus 273 ~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk 352 (1265)
T KOG0976|consen 273 RQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDK 352 (1265)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH
Confidence 33333345567777777777777777766555556666666666777777788888888888999999999999999999
Q ss_pred HHHhhhhhhhHhHHHHHHHHHH
Q 021664 204 LIEIEGKQDITTLGVKKLCDRA 225 (309)
Q Consensus 204 i~~ie~kQd~Tn~GV~~LC~f~ 225 (309)
+.++|.+-|.+.+-|..|-+--
T Consensus 353 ~~eLEKkrd~al~dvr~i~e~k 374 (1265)
T KOG0976|consen 353 LNELEKKRDMALMDVRSIQEKK 374 (1265)
T ss_pred HHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999988888776543
No 248
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=52.85 E-value=59 Score=31.71 Aligned_cols=61 Identities=13% Similarity=0.229 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHH---HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhh
Q 021664 125 SLSDACNSVARQLEDVYSSISAAQRQLS---SKITSVDRDVNKIVEISQATQEEVTILRGRSKL 185 (309)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~~aKrhLs---qRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ 185 (309)
=+.++++.....|+...+.|+..+++|. .+|+.+..+.++...-...+++++......+.+
T Consensus 218 P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~r 281 (344)
T PF12777_consen 218 PKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLER 281 (344)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3667777777777777777776665543 444455555555544455555555544444333
No 249
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=52.71 E-value=1.4e+02 Score=31.73 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHH
Q 021664 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVE 167 (309)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~e 167 (309)
.+..++...+..-|+.--..+...=+.|..||.+|.+++|-+.+
T Consensus 336 ~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEq 379 (531)
T PF15450_consen 336 QSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQ 379 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 56677777778777766666666778899999999998887654
No 250
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=52.59 E-value=2.6e+02 Score=28.18 Aligned_cols=23 Identities=4% Similarity=0.286 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHH
Q 021664 124 RSLSDACNSVARQLEDVYSSISA 146 (309)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~ 146 (309)
..|++-.+++++|-||=..++.-
T Consensus 206 ~ema~lL~sLt~HfDqC~~a~~~ 228 (412)
T PF04108_consen 206 QEMASLLESLTNHFDQCVTAVRH 228 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888887777763
No 251
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=52.53 E-value=43 Score=29.70 Aligned_cols=58 Identities=5% Similarity=0.083 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHH
Q 021664 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (309)
Q Consensus 143 sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~ 202 (309)
-+..++++-..+++.||.+|.+-+ ...++++|-....++.++-..+..+...+...+.
T Consensus 4 w~~~~~~~~~~~~~~Le~elk~~~--~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~ 61 (177)
T PF10602_consen 4 WIEETKAKNAEELEKLEAELKDAK--SNLGKESIRMALEDLADHYCKIGDLEEALKAYSR 61 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 467888889999999999998766 6778888888888888887777777777665553
No 252
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.47 E-value=39 Score=37.84 Aligned_cols=67 Identities=13% Similarity=0.233 Sum_probs=49.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHH
Q 021664 131 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIV 197 (309)
Q Consensus 131 ~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V 197 (309)
+.=-|||++=-++|..-+++|++||+.|.+++-.+++..+.+.....-....+++..-.++..+++.
T Consensus 436 nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl 502 (1118)
T KOG1029|consen 436 NAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKL 502 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445788888899999999999999999988888887777776665555555555555555555543
No 253
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=52.33 E-value=2.2e+02 Score=27.33 Aligned_cols=92 Identities=10% Similarity=0.138 Sum_probs=61.6
Q ss_pred cchhhhhhhHHHHHHHHHHhHHHHHHHHHH-HHHHHHHhHhhhhhhHHHHHHHHHHHHHHH------------HHhhhch
Q 021664 117 DMMFATRRSLSDACNSVARQLEDVYSSISA-AQRQLSSKITSVDRDVNKIVEISQATQEEV------------TILRGRS 183 (309)
Q Consensus 117 DlMfVTKRnms~Av~sv~KqLeqVs~sL~~-aKrhLsqRI~~vD~klde~~eis~~i~~eV------------~~v~~dl 183 (309)
.+|+..=.+..+.+..+.++++++.+.+-. .+++.-.||-.+.+.+=.........++-+ .+.+.-+
T Consensus 143 ~lld~i~d~~~~~le~i~~~~~~ie~~l~~~~~~~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~~~~~~~~l 222 (322)
T COG0598 143 ALLDAIVDNYFPVLEQIEDELEAIEDQLLASTTNEELERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWLSEEDREYL 222 (322)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccCCHHHHHHH
Confidence 466677788999999999999999976655 445577777777776655544444433332 2334445
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhh
Q 021664 184 KLIGDEFQSVRDIVQTLESKLIEIE 208 (309)
Q Consensus 184 ~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (309)
..+.+|+.++..++..+..++..+-
T Consensus 223 ~dv~~~~~~~~~~~~~~~~~l~~l~ 247 (322)
T COG0598 223 RDVLDHLTQLIEMLEALRERLSSLL 247 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667777777777777776654
No 254
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=52.15 E-value=1e+02 Score=31.59 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=25.1
Q ss_pred eeeEEecccCcCcchhhhhhhHHHHHHHHHHhHHHHHHHHHHHH--HHHHHhHhhhhhhHHH
Q 021664 105 YGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQ--RQLSSKITSVDRDVNK 164 (309)
Q Consensus 105 YgYmwWKGws~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aK--rhLsqRI~~vD~klde 164 (309)
-||-||++- .-..+.=...+.+|++....+....| ++|..+|.....+++.
T Consensus 49 gg~~f~QqQ---------~~~~~~~l~a~~~q~~~~~~aqe~q~l~~ql~~~~~~~q~el~~ 101 (391)
T COG2959 49 GGYYFGQQQ---------NVLQTQELQALQQQLKALQLAQENQKLLAQLESLIAQQQAELDR 101 (391)
T ss_pred hHHHHHHHH---------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677764 12233334444555555555555555 5555554444444444
No 255
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=52.06 E-value=2e+02 Score=28.02 Aligned_cols=77 Identities=6% Similarity=0.160 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHH
Q 021664 142 SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGV 218 (309)
Q Consensus 142 ~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV 218 (309)
+.|...++.|.+.++.+...-++..+-.+..++|..++...-.+.-.+...++.-...++.+.++++..-+++..=+
T Consensus 53 ~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L 129 (314)
T PF04111_consen 53 EKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQL 129 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555666666777777666666666566666666555555445555555555444445555555544444444333
No 256
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=52.03 E-value=1.9e+02 Score=26.32 Aligned_cols=38 Identities=11% Similarity=0.377 Sum_probs=24.9
Q ss_pred cCcCcchhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 021664 113 WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSS 153 (309)
Q Consensus 113 ws~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsq 153 (309)
|+|+.-... .+.+.++.+.+.++++...++..+..|..
T Consensus 57 WsFps~~~~---~~~~~~~~l~~~~~~~~~~i~~l~~~i~~ 94 (188)
T PF03962_consen 57 WSFPSQAKQ---KRQNKLEKLQKEIEELEKKIEELEEKIEE 94 (188)
T ss_pred EecChHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678765544 44566777777777777777666666544
No 257
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=51.99 E-value=1.9e+02 Score=26.46 Aligned_cols=69 Identities=7% Similarity=0.148 Sum_probs=53.5
Q ss_pred ecccCcCcchhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhh
Q 021664 110 WKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE 189 (309)
Q Consensus 110 WKGws~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~D 189 (309)
+.+|+.++ ..|.++...+|..+|..+.++..+-.. .++.-+-|.|....+..++.=+. ++++.+...|
T Consensus 58 f~~ls~~E------~~l~~~le~~g~~~d~~~~~~~~~~~~----~~~f~e~LkEy~~ya~slk~vlk--~r~~~q~~~e 125 (201)
T cd07622 58 FSEWSAIE------KEMGDGLQKAGHYMDSYAASIDNGLED----EELIADQLKEYLFFADSLRAVCK--KHELLQYDLE 125 (201)
T ss_pred HHHHHhcc------hhHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 46788888 699999999999999988888875544 46778888888888888887443 6666666655
Q ss_pred H
Q 021664 190 F 190 (309)
Q Consensus 190 v 190 (309)
.
T Consensus 126 ~ 126 (201)
T cd07622 126 K 126 (201)
T ss_pred H
Confidence 4
No 258
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=51.95 E-value=34 Score=28.11 Aligned_cols=21 Identities=10% Similarity=0.238 Sum_probs=14.1
Q ss_pred hhhhhhhHHHHHHHHHHhHHHH
Q 021664 119 MFATRRSLSDACNSVARQLEDV 140 (309)
Q Consensus 119 MfVTKRnms~Av~sv~KqLeqV 140 (309)
|||- +...+|...+.+.++..
T Consensus 59 vlv~-~~~~e~~~~l~~r~e~i 79 (110)
T TIGR02338 59 LLVK-TDKEEAIQELKEKKETL 79 (110)
T ss_pred hhhe-ecHHHHHHHHHHHHHHH
Confidence 6665 66777777776666655
No 259
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=51.74 E-value=1.7e+02 Score=26.27 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhh
Q 021664 141 YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE 189 (309)
Q Consensus 141 s~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~D 189 (309)
...|..=++++..-|+.-...-++..++.+..++++.++|....+|+.|
T Consensus 36 ~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e 84 (155)
T PRK06569 36 EEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKE 84 (155)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555666666666666666666666655
No 260
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=51.59 E-value=1.1e+02 Score=27.48 Aligned_cols=74 Identities=12% Similarity=0.140 Sum_probs=52.3
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHH-HHHHHHHhhhhhhhHhHHHHHHHH
Q 021664 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT-LESKLIEIEGKQDITTLGVKKLCD 223 (309)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~-Le~Ki~~ie~kQd~Tn~GV~~LC~ 223 (309)
++..+++.++.+|.....+...+.+.-.++..|+..+|.-+..+-..-.+ |+..+..+...-+....+...|-+
T Consensus 8 ei~e~~~~L~~~L~~l~ki~~Rl~kr~~~l~~d~~efg~~~~~L~~~E~~~L~~~l~~~~~~~~~~s~~~~~l~~ 82 (185)
T cd07628 8 EIREKSDKLDENLTKIDKIFAKVVKRQSDLSVDYADLATQFQKLGSLESGEITEPFKIFSESLSQFSTSLRVLNK 82 (185)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777777788888888888777777777766 777777666555555555555544
No 261
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=51.49 E-value=45 Score=25.44 Aligned_cols=35 Identities=14% Similarity=0.267 Sum_probs=19.8
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 021664 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSK 154 (309)
Q Consensus 119 MfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqR 154 (309)
||+.+.+ .+-...+....+.+.+.+.....+...+
T Consensus 18 L~aP~sG-~e~R~~l~~~~~~~~~~~~~~~~~~~~~ 52 (74)
T PF12732_consen 18 LFAPKSG-KETREKLKDKAEDLKDKAKDLYEEAKEK 52 (74)
T ss_pred HhCCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666544 4555566666666666655555554444
No 262
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=51.23 E-value=49 Score=25.33 Aligned_cols=20 Identities=5% Similarity=0.132 Sum_probs=8.2
Q ss_pred HHHHHHHhhhchhhhhhhHH
Q 021664 172 TQEEVTILRGRSKLIGDEFQ 191 (309)
Q Consensus 172 i~~eV~~v~~dl~~ig~Dv~ 191 (309)
+++++..+..++.++..+++
T Consensus 4 i~e~l~~ie~~l~~~~~~i~ 23 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERID 23 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333333
No 263
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=51.16 E-value=89 Score=22.39 Aligned_cols=39 Identities=13% Similarity=0.291 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021664 170 QATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (309)
Q Consensus 170 ~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (309)
..|...|.+++.=...|+.+|+.=..++..+|..++...
T Consensus 7 ~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~ 45 (63)
T PF05739_consen 7 DELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRAN 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444433
No 264
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=51.02 E-value=58 Score=31.62 Aligned_cols=15 Identities=20% Similarity=0.352 Sum_probs=8.2
Q ss_pred cchhhhhhhHHHHHHH
Q 021664 28 SSVSDAVGGTLKIVSK 43 (309)
Q Consensus 28 sdv~~~lsg~lk~l~k 43 (309)
||+ ..+|-++|-+.=
T Consensus 17 sDv-E~iSkalQr~aL 31 (290)
T COG4026 17 SDV-EVISKALQRLAL 31 (290)
T ss_pred chH-HHHHHHHHHhhh
Confidence 444 455666665543
No 265
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=50.90 E-value=44 Score=26.12 Aligned_cols=43 Identities=12% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh
Q 021664 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI 186 (309)
Q Consensus 144 L~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~i 186 (309)
...+..+|..+++.++..++.+..-.+.+.+++.+++..+...
T Consensus 60 ~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~ 102 (106)
T PF01920_consen 60 KEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYEL 102 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 266
>KOG3067 consensus Translin family protein [General function prediction only]
Probab=50.75 E-value=1e+02 Score=29.25 Aligned_cols=100 Identities=15% Similarity=0.222 Sum_probs=51.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHH-----H
Q 021664 132 SVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI-----E 206 (309)
Q Consensus 132 sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~-----~ 206 (309)
++-+|++..-+.=++-|.++..-++.++.++.+.+..-..+...-+.+-.....-..|+..+++--.+|-.... +
T Consensus 6 sif~q~q~~id~e~~iRE~iravV~~ie~~~r~iq~~L~~vhq~~~~i~k~~~~are~~~~~kq~~~~LaE~~~~~qyyr 85 (226)
T KOG3067|consen 6 SIFIQLQDFIDKEQSIREKIRAVVDEIEEKLREIQLLLQNVHQNENLIPKECGLAREDLENIKQKYRMLAELPPAGQYYR 85 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhhcCCccceEE
Confidence 45556666555555555555544444444443333322222111111111111222334444544444443332 4
Q ss_pred hhhhhhhHhHHHHHHHHHHHhhccC
Q 021664 207 IEGKQDITTLGVKKLCDRARELENG 231 (309)
Q Consensus 207 ie~kQd~Tn~GV~~LC~f~~~~~~~ 231 (309)
..++=++..+++.+|..|+..+|-+
T Consensus 86 y~~~w~~~~Q~vv~l~alv~~Let~ 110 (226)
T KOG3067|consen 86 YNGHWRRSTQRVVSLPALVAWLETG 110 (226)
T ss_pred ecchHHHHHHHHHHHHHHHHHHhhc
Confidence 4466788899999999999988877
No 267
>COG1511 Predicted membrane protein [Function unknown]
Probab=50.75 E-value=1.7e+02 Score=32.00 Aligned_cols=102 Identities=12% Similarity=0.232 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHhHHHHHHHH-H-HH----H---HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHH
Q 021664 125 SLSDACNSVARQLEDVYSSI-S-AA----Q---RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD 195 (309)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL-~-~a----K---rhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~ 195 (309)
.++++.+.+++++-..+... . .+ + +.....+..+.+-+++.....+.+.+....+..-...+.+++..+..
T Consensus 148 ~~~~l~~~is~~~t~t~~~~v~~~~i~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 227 (780)
T COG1511 148 AADKLLNEISKELTETYTKVVAFPTIYDLGGGVKGAADGAEKLKDGTDEASNGNKKLSDLLNTLNNSSATFSDGLNALTS 227 (780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhHHHHhh
Confidence 44555566666655555444 1 11 1 11223344444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHHHHHHHHHH
Q 021664 196 IVQTLESKLIEIEGKQDITTLGVKKLCDRAR 226 (309)
Q Consensus 196 ~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~ 226 (309)
-+..+.+++..+....+.-+.|+..|-+..+
T Consensus 228 ~~~~l~d~l~~i~~~~~~~~~~~~~l~~~~~ 258 (780)
T COG1511 228 GLTTLTDGLNQLDSGLGTLAAGIGELKQGAE 258 (780)
T ss_pred hhHHHhhhHHHHHhhhhHHhhhhHHHHHHHH
Confidence 4444444444444443333334444433333
No 268
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=50.68 E-value=33 Score=34.14 Aligned_cols=12 Identities=33% Similarity=0.537 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHh
Q 021664 196 IVQTLESKLIEI 207 (309)
Q Consensus 196 ~V~~Le~Ki~~i 207 (309)
-+..||.++..+
T Consensus 152 ris~lEd~~~~i 163 (370)
T PF02994_consen 152 RISELEDRIEEI 163 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 269
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=50.61 E-value=3.1e+02 Score=28.52 Aligned_cols=73 Identities=7% Similarity=0.137 Sum_probs=53.0
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHh
Q 021664 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARE 227 (309)
Q Consensus 155 I~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~ 227 (309)
+..+-..|++...=....+.+...++..+..+..+++..+..+.+.|.||.....--+.+...--.--.-+.-
T Consensus 367 ~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~ 439 (522)
T PF05701_consen 367 MSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKA 439 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777778888888889999999999999999999999887665555555544443333333
No 270
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=50.54 E-value=3.4e+02 Score=28.96 Aligned_cols=15 Identities=13% Similarity=0.330 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhcC
Q 021664 61 LLAEVSSVQQELSHV 75 (309)
Q Consensus 61 L~aQV~~LaqEl~~L 75 (309)
|..|+..|++++++.
T Consensus 199 L~~ql~~l~~~l~~a 213 (754)
T TIGR01005 199 LAPEIADLSKQSRDA 213 (754)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777888888877665
No 271
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=50.51 E-value=3.2e+02 Score=28.69 Aligned_cols=33 Identities=15% Similarity=0.276 Sum_probs=17.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHH
Q 021664 133 VARQLEDVYSSISAAQRQLSSKITSVDRDVNKI 165 (309)
Q Consensus 133 v~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~ 165 (309)
+...++.+.+....+.++|.++++.+...+.+.
T Consensus 90 ~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 122 (779)
T PRK11091 90 LVAKLEEMRERDLELNVQLKDNIAQLNQEIAER 122 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555666666665555443
No 272
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=50.49 E-value=2e+02 Score=32.67 Aligned_cols=127 Identities=15% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHH---------------------------------------------------
Q 021664 150 QLSSKITSVDRDVNKIVEISQATQEEVTI--------------------------------------------------- 178 (309)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~~eV~~--------------------------------------------------- 178 (309)
+|++|++++...+|+..++=....+-|.+
T Consensus 369 el~~rledir~emDd~~~~f~lL~n~vkdT~aE~yfLSILQhlllirnDy~~rpqYykLIEecISqIvlHr~~~DPdf~y 448 (1102)
T KOG1924|consen 369 ELSGRLEDIRAEMDDANEVFELLANTVKDTGAEPYFLSILQHLLLIRNDYYIRPQYYKLIEECISQIVLHRTGMDPDFKY 448 (1102)
T ss_pred HHHhHHHhhhhhhccHHHHHHHHHHhhhhccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCcch
Q ss_pred ---hhhchhhhhhhH------HHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHhhccCCCccceeccccCcccccc
Q 021664 179 ---LRGRSKLIGDEF------QSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQASRYTLSRTTL 249 (309)
Q Consensus 179 ---v~~dl~~ig~Dv------~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~~~~~~~~~~~Q~~~~~s~~~al 249 (309)
..-|++.+-+++ +...+-...++.|++.-...-.-+.+-....-+-+..++....+---|..... .--.+
T Consensus 449 r~~l~id~~~liD~~vdkak~eeseqkA~e~~kk~~ke~ta~qe~qael~k~e~Ki~~l~ae~~al~s~~~~~~-~~~~i 527 (1102)
T KOG1924|consen 449 RFRLDIDLTELIDKMVDKAKAEESEQKAAELEKKFDKELTARQEAQAELQKHEEKIKLLEAEKQALSSPSQLLP-IDGGI 527 (1102)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCchhhhhccCcccCCC-CCCCC
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021664 250 ELPGITPSSRSGSLHPLPLEPPSPSXXX 277 (309)
Q Consensus 250 e~~~~~p~sr~~slpp~~~e~~sps~~~ 277 (309)
-.||..|..+-..-||+|..||=|.-+.
T Consensus 528 P~PP~~pp~gG~g~pppPppPPlpggag 555 (1102)
T KOG1924|consen 528 PPPPPLPPTGGTGPPPPPPPPPLPGGAG 555 (1102)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC
No 273
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=50.12 E-value=27 Score=29.36 Aligned_cols=55 Identities=13% Similarity=0.298 Sum_probs=49.7
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHH
Q 021664 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (309)
Q Consensus 148 KrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~ 202 (309)
|+.|-.+|..+..++.+..+-.+.++++|.++-+.=.+..-+-+.++..+..++.
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7889999999999999999999999999999888888888899999999988876
No 274
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=50.05 E-value=2.2e+02 Score=26.63 Aligned_cols=69 Identities=10% Similarity=0.159 Sum_probs=37.9
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Q 021664 145 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (309)
Q Consensus 145 ~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (309)
..-|.+|...++++...+++...--..-...-..+..++..+..|++.....-..|+.++..+...=+|
T Consensus 67 ~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~f 135 (312)
T PF00038_consen 67 SKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEF 135 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHH
Confidence 334444444444444444444433333344444445555555566777777777777777777655443
No 275
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=50.00 E-value=44 Score=30.80 Aligned_cols=63 Identities=16% Similarity=0.263 Sum_probs=22.6
Q ss_pred hhHHHHHHhhhheeeEEecccCcCcchhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHh
Q 021664 93 KYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKIT 156 (309)
Q Consensus 93 ~y~l~a~iGavGYgYmwWKGws~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~ 156 (309)
.|+-.+++++|++-|+| .=++-..=.+-.++...++...=...+..-.+++.+|++.+....+
T Consensus 35 ~yGWyil~~~I~ly~l~-qkl~~~~r~~r~~~~~~~~~~~dpd~v~~rqEa~eaAR~RmQEE~d 97 (190)
T PF06936_consen 35 SYGWYILFGCILLYLLW-QKLSPSFRSLRERRQLDAAAKKDPDVVVRRQEAMEAARRRMQEELD 97 (190)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHHHH
Confidence 34544455555554444 4343222122234444444433344556678888888888765443
No 276
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=49.99 E-value=70 Score=34.71 Aligned_cols=46 Identities=15% Similarity=0.197 Sum_probs=29.8
Q ss_pred cCcCcchhhhhh--hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhh
Q 021664 113 WKLPDMMFATRR--SLSDACNSVARQLEDVYSSISAAQRQLSSKITSV 158 (309)
Q Consensus 113 ws~SDlMfVTKR--nms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~v 158 (309)
|.++|.-|...+ ..-+|+..+..+++|+.+-+..+|.-|.+=.+++
T Consensus 12 i~~~~~~~L~~~i~~~~~~~~a~~~~~~qi~~Wi~k~k~~l~~L~~~l 59 (683)
T PF08580_consen 12 ILLPIALYLSESIPTAFNAVKALSGAAEQILDWIQKAKDVLYGLREGL 59 (683)
T ss_pred cccchHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 444455555444 2334555666789999999999998877654443
No 277
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=49.78 E-value=43 Score=28.08 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=9.7
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhh
Q 021664 154 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE 189 (309)
Q Consensus 154 RI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~D 189 (309)
.+.++++++++...=-..++++|..++.++.+....
T Consensus 63 ~L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~ 98 (133)
T PF06148_consen 63 NLVGMDEKIEELRKPLSQFREEVESVRDELDNTQEE 98 (133)
T ss_dssp -----------HHHHHHHHHHHHHHHHHS-STTHHH
T ss_pred HHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344433333334444444444443333333
No 278
>PF05802 EspB: Enterobacterial EspB protein
Probab=49.58 E-value=1.8e+02 Score=28.97 Aligned_cols=63 Identities=16% Similarity=0.160 Sum_probs=52.6
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021664 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (309)
Q Consensus 147 aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (309)
+.+.++..=+.+++.+++..++-++|-.--+++.+.++.+.+||...-+....|-..+..-..
T Consensus 148 q~kgaqkyaEsl~d~~~KAseiMQQim~t~T~Aa~r~s~v~ddv~~~a~~as~~ae~~A~Aa~ 210 (317)
T PF05802_consen 148 QQKGAQKYAESLADAMEKASEIMQQIMATATKAASRTSGVADDVATSAQKASQLAEQAADAAQ 210 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888999999999999999999999999999999999999877666666555544433
No 279
>TIGR02135 phoU_full phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by Pfam model pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function.
Probab=49.24 E-value=1.7e+02 Score=24.93 Aligned_cols=51 Identities=24% Similarity=0.356 Sum_probs=41.1
Q ss_pred CcchhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH
Q 021664 116 PDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV 166 (309)
Q Consensus 116 SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~ 166 (309)
.|-+--.|+.+..-+..+.+.|+.+.+++..-...+.++|...|+.+|...
T Consensus 4 ~~~l~~~~~el~~m~~~~~~ml~~~~~~~~~~d~~~~~~i~~~e~~id~l~ 54 (212)
T TIGR02135 4 DEELKELREELLEMGGLVEEQLEDAVRALTEKDRELARKVIEDDDQINALE 54 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHChHHHHHHH
Confidence 344556788888888889999999999998777788888888888887765
No 280
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=49.13 E-value=1e+02 Score=28.20 Aligned_cols=57 Identities=12% Similarity=0.402 Sum_probs=26.9
Q ss_pred HHHHhHHHHHH----HHHHHHHHHHHhHhhhhhhHHHHHHHH---HHHHHHHHHhhhchhhhhh
Q 021664 132 SVARQLEDVYS----SISAAQRQLSSKITSVDRDVNKIVEIS---QATQEEVTILRGRSKLIGD 188 (309)
Q Consensus 132 sv~KqLeqVs~----sL~~aKrhLsqRI~~vD~klde~~eis---~~i~~eV~~v~~dl~~ig~ 188 (309)
.|-+.|+.+.. .+..++++|...|+.+..+++...+++ +.++++++.+..+|++|..
T Consensus 102 QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433 334456666666666666655544443 4455556555555555543
No 281
>PRK10869 recombination and repair protein; Provisional
Probab=49.04 E-value=1e+02 Score=32.24 Aligned_cols=91 Identities=16% Similarity=0.235 Sum_probs=50.7
Q ss_pred CcCcchhhhhhhHHHH------HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhh
Q 021664 114 KLPDMMFATRRSLSDA------CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIG 187 (309)
Q Consensus 114 s~SDlMfVTKRnms~A------v~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig 187 (309)
+.-|.+.-..+.|... ...+...|++++..|..+.+.|..-.+.++-.=++..++.+ -+..++.=-...|
T Consensus 241 ~~~~~l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~----Rl~~l~~L~rKyg 316 (553)
T PRK10869 241 NILSQLYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQ----RLSKQISLARKHH 316 (553)
T ss_pred cHHHHHHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH----HHHHHHHHHHHhC
Confidence 3455566666666543 35577778888888888888888877766544333333332 2223333223344
Q ss_pred hhHHHHHHHHHHHHHHHHHhh
Q 021664 188 DEFQSVRDIVQTLESKLIEIE 208 (309)
Q Consensus 188 ~Dv~~v~~~V~~Le~Ki~~ie 208 (309)
.+++.|-..-..++.+++.++
T Consensus 317 ~~~~~~~~~~~~l~~eL~~L~ 337 (553)
T PRK10869 317 VSPEELPQHHQQLLEEQQQLD 337 (553)
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 555555555555555554443
No 282
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=48.73 E-value=2.2e+02 Score=32.40 Aligned_cols=113 Identities=20% Similarity=0.225 Sum_probs=60.8
Q ss_pred hhhhhhHHHHHHHHHHhHHHHH---------HHHHHHH----HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh
Q 021664 120 FATRRSLSDACNSVARQLEDVY---------SSISAAQ----RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI 186 (309)
Q Consensus 120 fVTKRnms~Av~sv~KqLeqVs---------~sL~~aK----rhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~i 186 (309)
|.+.+...+=+.++.+||+.|. .+.+..| ..|..+++.++....+.. .+|..+...+.+.
T Consensus 735 ~qq~~q~~srl~~~~aql~~v~~~~~eL~~~~~~~~~~e~E~~~lEe~~d~~~ee~~el~-------a~v~~~~~qi~~l 807 (984)
T COG4717 735 EQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELKEEELALLEEAIDALDEEVEELH-------AQVAALSRQIAQL 807 (984)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 5688888899999999999642 2222222 111123333333222222 2222222222221
Q ss_pred --hhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHhhccCCCccceec
Q 021664 187 --GDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQA 239 (309)
Q Consensus 187 --g~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~~~~~~~~~~~Q~ 239 (309)
|+.+..++++-..|=.+|.++--+=-..-.++..|-+.++..+..+.|..+|-
T Consensus 808 E~g~~~a~lr~~~~slk~~l~e~ar~Wasl~~~~~vl~e~l~~~ke~rlP~vi~~ 862 (984)
T COG4717 808 EGGGTVAELRQRRESLKEDLEEKARKWASLRLAVQVLEEALRLFKERRLPAVIQE 862 (984)
T ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHH
Confidence 23445556666666666666666655666666777777777777777766653
No 283
>PRK04098 sec-independent translocase; Provisional
Probab=48.38 E-value=1.9e+02 Score=26.19 Aligned_cols=52 Identities=10% Similarity=0.370 Sum_probs=28.6
Q ss_pred hhhhHHHHHHHHHHh--HHHHHHHHHHHHHHHHHhHhhhhh--hHHHHHHHHHHHH
Q 021664 122 TRRSLSDACNSVARQ--LEDVYSSISAAQRQLSSKITSVDR--DVNKIVEISQATQ 173 (309)
Q Consensus 122 TKRnms~Av~sv~Kq--LeqVs~sL~~aKrhLsqRI~~vD~--klde~~eis~~i~ 173 (309)
-||.++++-+.+-.. ++.+-+.+...|+.|.+-.++|.. .+|+..++.....
T Consensus 39 ~K~~~~~~k~~l~~Ei~~~elk~e~~k~k~~l~~~~~~l~~~~~~eel~~~~~~~~ 94 (158)
T PRK04098 39 VKKTINDAKSTLDKEINIEEIKEEALKYKKEFESAVESLKKKLKFEELDDLKITAE 94 (158)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhhh
Confidence 345555554444442 344455556667777777777766 4555555543333
No 284
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=48.35 E-value=85 Score=30.79 Aligned_cols=56 Identities=14% Similarity=0.208 Sum_probs=40.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 021664 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR 182 (309)
Q Consensus 127 s~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~d 182 (309)
+.++..+...|+++-......=.++++||++-..+|+...+=....+..|..+++-
T Consensus 17 eEti~qi~~aL~~L~~v~~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~gs 72 (297)
T PF11945_consen 17 EETILQIADALEYLDKVSNDIFSRISARVERNRERLQAIQQRIEVAQAKIEKLQGS 72 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34566677777777777777777888888888887777777666677777666654
No 285
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=48.27 E-value=35 Score=35.69 Aligned_cols=37 Identities=8% Similarity=0.084 Sum_probs=25.1
Q ss_pred HHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021664 173 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (309)
Q Consensus 173 ~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (309)
++...++...++.++.+++.+......+|.||+.+|.
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEa 111 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQ 111 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3346677777777777777777777777777775554
No 286
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=47.88 E-value=2.6e+02 Score=26.79 Aligned_cols=31 Identities=6% Similarity=0.234 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 021664 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSK 154 (309)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqR 154 (309)
..|++..+.++..+++.+.+|...++|+.++
T Consensus 103 ~~l~~~L~~~a~~~~~~s~~l~~l~~~~~~~ 133 (240)
T cd07667 103 GELAEPLEGVSACIGNCSTALEELTEDMTED 133 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 6899999999999999999999999998774
No 287
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=47.78 E-value=2.8e+02 Score=27.18 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHhHHHHHHHHH
Q 021664 124 RSLSDACNSVARQLEDVYSSIS 145 (309)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~ 145 (309)
...++..+.+++.||+++..+-
T Consensus 142 d~~ad~lE~~~~~ld~ls~~if 163 (316)
T PRK11085 142 EQLADEIENIYSDLEKLSRVIM 163 (316)
T ss_pred HHhHHHHHHHHHHHHHHHHHhc
Confidence 3455666666666666666664
No 288
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=47.56 E-value=52 Score=28.74 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=18.4
Q ss_pred hhchhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021664 180 RGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (309)
Q Consensus 180 ~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (309)
.++|.++-.-++.+...+.-||.||++|.
T Consensus 20 E~kL~~~e~~Lq~~E~~l~iLEaKL~SIp 48 (148)
T PF10152_consen 20 EEKLSDMEQRLQRLEATLNILEAKLSSIP 48 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34444455555666666677788887776
No 289
>PLN02867 Probable galacturonosyltransferase
Probab=47.47 E-value=80 Score=33.59 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHh
Q 021664 170 QATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (309)
Q Consensus 170 ~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (309)
+++-.|++..+-|...+ +..++.|++.+|.++...
T Consensus 123 ~~~~~~~~~~~~d~~~~---~~kl~am~~~~e~~~~~~ 157 (535)
T PLN02867 123 NDLVKEMTSNRQDIKAF---AFRTKAMLLKMERKVQSA 157 (535)
T ss_pred HHHHHHHHhccchHHHH---HHHHHHHHHHHHHHHHHH
Confidence 33344444444444333 456777788888777654
No 290
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=47.18 E-value=2e+02 Score=26.04 Aligned_cols=22 Identities=18% Similarity=0.222 Sum_probs=12.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHH
Q 021664 185 LIGDEFQSVRDIVQTLESKLIE 206 (309)
Q Consensus 185 ~ig~Dv~~v~~~V~~Le~Ki~~ 206 (309)
...++++.++..-..|..+|.+
T Consensus 167 ~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 167 KHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3445566666666666555544
No 291
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=47.07 E-value=2.1e+02 Score=27.60 Aligned_cols=85 Identities=11% Similarity=0.206 Sum_probs=52.1
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH---h--HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh-------hhh
Q 021664 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSS---K--ITSVDRDVNKIVEISQATQEEVTILRGRSKLI-------GDE 189 (309)
Q Consensus 122 TKRnms~Av~sv~KqLeqVs~sL~~aKrhLsq---R--I~~vD~klde~~eis~~i~~eV~~v~~dl~~i-------g~D 189 (309)
.++.-.+|+.-+.+||++....|..+.+.|.. + +-.++.......+....++.+..+++..+... +-+
T Consensus 164 ~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~ 243 (362)
T TIGR01010 164 NERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQ 243 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCc
Confidence 45556789999999999999999999877754 1 11122333334445555566665555555444 234
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021664 190 FQSVRDIVQTLESKLIE 206 (309)
Q Consensus 190 v~~v~~~V~~Le~Ki~~ 206 (309)
+..++.-+..|+.+|..
T Consensus 244 v~~l~~~i~~l~~~i~~ 260 (362)
T TIGR01010 244 VPSLQARIKSLRKQIDE 260 (362)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 55555556666666554
No 292
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=47.00 E-value=6.4 Score=33.67 Aligned_cols=66 Identities=9% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHH
Q 021664 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLG 217 (309)
Q Consensus 152 sqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~G 217 (309)
..+++.+..++++..+-...+..+|.+...+++++...+..+...|..|+..+..+..++..-..-
T Consensus 16 ~~~~~~i~~~l~~~~~~~~~~~~~v~~t~~~~~~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~~~ 81 (138)
T PF06009_consen 16 LDRLDPISENLENWSENLGEINSDVEETNQDISDANKALDDANNSVKNLEQLAPDLLDKLKPLENL 81 (138)
T ss_dssp ------------------------------------------------------------------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566667777777777788888888888888888888888888888888888888876544333
No 293
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=46.87 E-value=1.5e+02 Score=28.77 Aligned_cols=76 Identities=11% Similarity=0.196 Sum_probs=48.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHH
Q 021664 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (309)
Q Consensus 130 v~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ 206 (309)
++.++..=-.+++.|..--..=..|-..+. +--++.++.+.+++-+..++..+++....+.++..=...||.||..
T Consensus 126 aseit~~GA~LydlL~kE~~lr~~R~~a~~-r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIek 201 (267)
T PF10234_consen 126 ASEITQRGASLYDLLGKEVELREERQRALA-RPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEK 201 (267)
T ss_pred HHHHHHHHHHHHHHHhchHhHHHHHHHHHc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445544433222222333333 3335667888888888888888888888888888888888888863
No 294
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=46.80 E-value=3e+02 Score=27.61 Aligned_cols=31 Identities=19% Similarity=0.394 Sum_probs=15.8
Q ss_pred hhhhhhHH---HHHHHHHHhHHHHHHHHHHHHHH
Q 021664 120 FATRRSLS---DACNSVARQLEDVYSSISAAQRQ 150 (309)
Q Consensus 120 fVTKRnms---~Av~sv~KqLeqVs~sL~~aKrh 150 (309)
|-|..+|+ +..+.+.+.+.++.+.|..+.+.
T Consensus 14 fp~e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~ 47 (383)
T PF04100_consen 14 FPDEQSLSNLDELIAKLRKEIRELDEEIKELVRE 47 (383)
T ss_pred CCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433 34455555556666665555443
No 295
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=46.69 E-value=7.9 Score=40.12 Aligned_cols=18 Identities=56% Similarity=0.916 Sum_probs=15.2
Q ss_pred eeeEcCcccceeec----cCCC
Q 021664 9 TFLVGAGILTSVLA----KEGR 26 (309)
Q Consensus 9 ~ILvGAG~~GSvl~----knGk 26 (309)
+|+||||++|+-|+ |+||
T Consensus 48 vIIVGAGV~GsaLa~~L~kdGR 69 (509)
T KOG1298|consen 48 VIIVGAGVAGSALAYALAKDGR 69 (509)
T ss_pred EEEECCcchHHHHHHHHhhCCc
Confidence 79999999998654 7887
No 296
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=46.53 E-value=89 Score=31.54 Aligned_cols=73 Identities=11% Similarity=0.156 Sum_probs=45.9
Q ss_pred HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhh---hhhh-HHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHH
Q 021664 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKL---IGDE-FQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRA 225 (309)
Q Consensus 153 qRI~~vD~klde~~eis~~i~~eV~~v~~dl~~---ig~D-v~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~ 225 (309)
.+|-.+|.+.-+...-.+..+.+-+.+...+.. -+.| .+.+..-+..|..+|..+|.+......-+..++..+
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 106 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSI 106 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444555555544444445555554444444433 2345 677877888888899999988888777777765533
No 297
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=46.23 E-value=1.5e+02 Score=23.68 Aligned_cols=73 Identities=14% Similarity=0.186 Sum_probs=42.2
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh---hhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHH
Q 021664 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI---GDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (309)
Q Consensus 151 LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~i---g~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~ 223 (309)
.-.+|-.+|.+.-+...-....+.+-+.+...+... |.|.+.+..-+..|-.+|..+|....-...-+..+|.
T Consensus 27 ~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~ 102 (108)
T PF02403_consen 27 DVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELLL 102 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555554444444444444444444443333 3467777777777777777777777766666666653
No 298
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=46.21 E-value=2.7e+02 Score=26.51 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHH-HHHHhhhchhhhhhhHHHHHHH----HHH
Q 021664 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQE-EVTILRGRSKLIGDEFQSVRDI----VQT 199 (309)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~-eV~~v~~dl~~ig~Dv~~v~~~----V~~ 199 (309)
=|.++++.|-||+.++-..+++ .+.+..+|-+|=|+.........+ |-..++..|.++.+++..|++- |.-
T Consensus 15 ~i~~~i~~vEkhFg~lC~~~a~----ytRKtArLRDk~D~lak~l~~yA~~E~~~l~~~L~~fae~la~vqDYRqa~v~R 90 (219)
T PF06730_consen 15 FIQDRITNVEKHFGELCQLFAA----YTRKTARLRDKGDELAKQLQDYANTENPNLKLGLKNFAECLAKVQDYRQAEVER 90 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhchhhHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888888888887776 455667777777765544444333 3446777889999999888754 555
Q ss_pred HHHHH
Q 021664 200 LESKL 204 (309)
Q Consensus 200 Le~Ki 204 (309)
||.|+
T Consensus 91 lE~KV 95 (219)
T PF06730_consen 91 LEAKV 95 (219)
T ss_pred HHHHh
Confidence 55555
No 299
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=45.97 E-value=2e+02 Score=32.44 Aligned_cols=66 Identities=11% Similarity=0.118 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhh------hhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHH
Q 021664 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSV------DRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 191 (309)
Q Consensus 126 ms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~v------D~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~ 191 (309)
+...+......+.++...+...++++...+... ...+++..+.....+.+..+.+..+..+...+.
T Consensus 782 l~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 853 (1047)
T PRK10246 782 LEQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQLAQQLRENTTRQGEIRQQLK 853 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555522222 123344444444444444444444433433333
No 300
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=45.84 E-value=1.2e+02 Score=26.19 Aligned_cols=47 Identities=19% Similarity=0.067 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 021664 165 IVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (309)
Q Consensus 165 ~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (309)
..+-....++|+......++.-...+++++.-+..++..+.+.+.+-
T Consensus 39 ~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~ 85 (160)
T PF13094_consen 39 NLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKA 85 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33333444445555555555556667777777777777777766653
No 301
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.80 E-value=88 Score=31.07 Aligned_cols=28 Identities=14% Similarity=0.172 Sum_probs=13.9
Q ss_pred ccccCcccccccCCCCCCCCCCCCCCCC
Q 021664 239 ASRYTLSRTTLELPGITPSSRSGSLHPL 266 (309)
Q Consensus 239 ~~~~~s~~~ale~~~~~p~sr~~slpp~ 266 (309)
+..+.++.|.-..+-++|..-+.-.+|.
T Consensus 202 ~p~~~p~ip~wqi~~~sp~~~~~~~~~~ 229 (300)
T KOG2629|consen 202 APSSAPSIPSWQIQAESPHHSSNRMTST 229 (300)
T ss_pred CcccCCCCchhhhccccchhhhccCCCC
Confidence 3334556666555555554333334444
No 302
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=45.75 E-value=1.5e+02 Score=29.14 Aligned_cols=13 Identities=15% Similarity=-0.000 Sum_probs=6.1
Q ss_pred hHHHHHHHHHHHh
Q 021664 215 TLGVKKLCDRARE 227 (309)
Q Consensus 215 n~GV~~LC~f~~~ 227 (309)
+..+..||.+..-
T Consensus 267 ~~~l~~l~~~~~~ 279 (359)
T COG1463 267 NQALANLRPLATL 279 (359)
T ss_pred HHHHHHHHHHHHH
Confidence 3444445554443
No 303
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=45.75 E-value=1.9e+02 Score=31.03 Aligned_cols=99 Identities=17% Similarity=0.256 Sum_probs=74.1
Q ss_pred EecccCcCcc--hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHH---------------
Q 021664 109 WWKGWKLPDM--MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQA--------------- 171 (309)
Q Consensus 109 wWKGws~SDl--MfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~--------------- 171 (309)
.=+|+|.+|| |-.-|--|..-.+-++-+-+.+-.++-+++.+...+++.|.+++.+-+-+...
T Consensus 361 ~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~~~~~~i~~~~nd~ 440 (622)
T COG5185 361 RKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQIGHNVNDS 440 (622)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHhhcCCCC
Confidence 3468888885 88889889999999999999999999999999999999999888765543322
Q ss_pred ------------------------------HHHHHHH-------hhhchhhhhhhHHHHHHHHHHHHHHHHHh
Q 021664 172 ------------------------------TQEEVTI-------LRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (309)
Q Consensus 172 ------------------------------i~~eV~~-------v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (309)
|+.++++ +.+++.+...|+..+++..+++|.+|.+.
T Consensus 441 ~l~iN~E~~~~~~sg~~~~I~~~i~eln~~i~~~~~~e~nksi~Lee~i~~~~~~i~El~~~l~~~e~~L~~a 513 (622)
T COG5185 441 SLKINIEQLFPKGSGINESIKKSILELNDEIQERIKTEENKSITLEEDIKNLKHDINELTQILEKLELELSEA 513 (622)
T ss_pred ceeeccccCCccccCchHhHHHHHHHHhHHHHHHHHHHhccceeHHHHhhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 1222221 45666667777777777777777777654
No 304
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.61 E-value=3.1e+02 Score=27.39 Aligned_cols=102 Identities=18% Similarity=0.202 Sum_probs=71.8
Q ss_pred hhhHH-HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH--------------------------------HHH
Q 021664 123 RRSLS-DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV--------------------------------EIS 169 (309)
Q Consensus 123 KRnms-~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~--------------------------------eis 169 (309)
++++. |+...++.+|.+.+...+...-.--.||.+-+.+-.+-. +..
T Consensus 134 e~~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~~~~~~dd~d~~~~~~qe~ql~~~e~~~~~~ 213 (305)
T KOG0809|consen 134 ERLLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSLDNTVDLPDDEDFSDRTFQEQQLMLFENNEEVV 213 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhccccccCcchhhhhhhhHHHHHHHHHhcchHHH
Confidence 45566 788889999999999999988777777766544322111 222
Q ss_pred HHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHh----HHHHHHHHH
Q 021664 170 QATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITT----LGVKKLCDR 224 (309)
Q Consensus 170 ~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn----~GV~~LC~f 224 (309)
..=.+||+.+..-+.....-++.+..+|-.=+.=+|+|.+|-+-|+ .|..-|-.+
T Consensus 214 ~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KA 272 (305)
T KOG0809|consen 214 REREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKA 272 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHH
Confidence 2334568888887777777788888888888888999988855544 566666543
No 305
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=45.50 E-value=1.6e+02 Score=24.85 Aligned_cols=41 Identities=20% Similarity=0.269 Sum_probs=21.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHH
Q 021664 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVE 167 (309)
Q Consensus 127 s~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~e 167 (309)
.+..-+++..|..+...+..-.+||..-+-.=-..|-.+..
T Consensus 25 ~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~ 65 (132)
T PF10392_consen 25 SDSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQAS 65 (132)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 33444556666666666666666655555443333333333
No 306
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=45.44 E-value=2.4e+02 Score=25.73 Aligned_cols=38 Identities=8% Similarity=0.177 Sum_probs=28.8
Q ss_pred CcchhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 021664 116 PDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSS 153 (309)
Q Consensus 116 SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsq 153 (309)
.+-|--.|+.+.+....+-+...+....|..+|+..-+
T Consensus 95 ~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~ 132 (236)
T cd07651 95 ASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEA 132 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778888888888888888888888888877653
No 307
>TIGR03818 MotA1 flagellar motor stator protein MotA. This model represents one family of MotA proteins which are often not identified by the "transporter, MotA/TolQ/ExbB proton channel family" model, pfam01618.
Probab=45.35 E-value=1.1e+02 Score=29.71 Aligned_cols=94 Identities=12% Similarity=0.211 Sum_probs=69.9
Q ss_pred hhHHHHHHhhhheeeEEecc-----cCcCcchhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh---HhhhhhhHHH
Q 021664 93 KYGVIVVIVAVGYGYVWWKG-----WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSK---ITSVDRDVNK 164 (309)
Q Consensus 93 ~y~l~a~iGavGYgYmwWKG-----ws~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqR---I~~vD~klde 164 (309)
..|+++++|++..||++=.| |.++-+|-|-=-.+ ++.-++.-++.+..++...|+-+..+ -+...+-++.
T Consensus 4 liGli~~~~~v~~g~~l~Gg~~~~l~~~~~~lIV~Ggtl--ga~lis~p~~~~~~~~~~~~~~f~~~~~~~~~~~~li~~ 81 (282)
T TIGR03818 4 IIGLVVVLGCVFGGYLLAGGHLAALWQPAELLIIGGAAI--GAFIIANPPKVLKETLKGLPKVFKGSKYGKADYLDLLSL 81 (282)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHHhcCCCCCccCHHHHHHH
Confidence 34667788888888887444 66677777765444 34457778889999999999988777 4566788888
Q ss_pred HHHHHHHHHHH-HHHhhhchhhhhh
Q 021664 165 IVEISQATQEE-VTILRGRSKLIGD 188 (309)
Q Consensus 165 ~~eis~~i~~e-V~~v~~dl~~ig~ 188 (309)
..+++...|+| +-.+..+++++.+
T Consensus 82 l~~la~~aR~~GllaLE~~v~~~~~ 106 (282)
T TIGR03818 82 LYELLRKARREGLMAIESHIENPEE 106 (282)
T ss_pred HHHHHHHHHhcCHHHHHhhhcCccc
Confidence 88999998888 6666666766664
No 308
>KOG4515 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.35 E-value=2.7e+02 Score=26.35 Aligned_cols=53 Identities=19% Similarity=0.327 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 021664 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (309)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV 176 (309)
+-+=+-|+-+-.||.+--+++++-..||-.|+..|+.++.-.-|-....++.-
T Consensus 91 q~~~~lctR~Q~Hl~~cA~aVA~dQn~lv~r~K~v~~s~~tLf~~~~~~qk~y 143 (217)
T KOG4515|consen 91 QPFFRLCTRLQEHLAVCAKAVAADQNKLVARCKSVEASMITLFEETRAHQKQY 143 (217)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557899999999999999999999999999999999987766666666553
No 309
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=45.29 E-value=2.4e+02 Score=25.73 Aligned_cols=89 Identities=10% Similarity=0.152 Sum_probs=50.6
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhh--chhhh--hhhHHHHHHHH
Q 021664 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG--RSKLI--GDEFQSVRDIV 197 (309)
Q Consensus 122 TKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~--dl~~i--g~Dv~~v~~~V 197 (309)
-|......++.+.+++++....+.. |..+|..+..++++.+.-...+.-.+..++. .+... +.|+.+-...+
T Consensus 93 ~k~~~~~~~~~l~~~~~~~~~~v~~----l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~f 168 (219)
T TIGR02977 93 EKQKAQELAEALERELAAVEETLAK----LQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARF 168 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHH
Confidence 5666667777777777776655554 4455566666666655443322222211111 11111 35666777777
Q ss_pred HHHHHHHHHhhhhhhhH
Q 021664 198 QTLESKLIEIEGKQDIT 214 (309)
Q Consensus 198 ~~Le~Ki~~ie~kQd~T 214 (309)
.-+|.|+.++|..-+..
T Consensus 169 er~e~ki~~~ea~aea~ 185 (219)
T TIGR02977 169 EQYERRVDELEAQAESY 185 (219)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 77888888888765543
No 310
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=45.23 E-value=3.6e+02 Score=28.39 Aligned_cols=15 Identities=33% Similarity=0.620 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 021664 138 EDVYSSISAAQRQLS 152 (309)
Q Consensus 138 eqVs~sL~~aKrhLs 152 (309)
+++.+.++.++.++.
T Consensus 39 ~~~~~~~~~~~~~~~ 53 (475)
T PRK10361 39 EEMVAELSAAKQQIT 53 (475)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444544444444
No 311
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=45.21 E-value=14 Score=29.41 Aligned_cols=44 Identities=14% Similarity=0.345 Sum_probs=31.6
Q ss_pred chhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHH
Q 021664 118 MMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (309)
Q Consensus 118 lMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde 164 (309)
+=|.||+..+. .++.+-++--+.|.+.-++|.+||+.|.+=||+
T Consensus 24 lHY~~k~~~~~---~ls~~d~~~L~~L~~~a~rm~eRI~tLE~ILd~ 67 (75)
T TIGR02976 24 LHYRSKRKTAA---SLSTDDQALLQELYAKADRLEERIDTLERILDA 67 (75)
T ss_pred HHHHhhhccCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34778877664 355555666666777778899999999887764
No 312
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=45.13 E-value=2.1e+02 Score=28.69 Aligned_cols=13 Identities=15% Similarity=0.230 Sum_probs=8.9
Q ss_pred CcccceeeccCCC
Q 021664 14 AGILTSVLAKEGR 26 (309)
Q Consensus 14 AG~~GSvl~knGk 26 (309)
+|++..|.+++|.
T Consensus 67 ~G~v~~i~V~eG~ 79 (457)
T TIGR01000 67 NNAIKENYLKENK 79 (457)
T ss_pred CcEEEEEEcCCCC
Confidence 3667777777774
No 313
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=45.10 E-value=3.3e+02 Score=31.47 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=9.9
Q ss_pred HHhHhhhhhhHHHHHHHHHHHH
Q 021664 152 SSKITSVDRDVNKIVEISQATQ 173 (309)
Q Consensus 152 sqRI~~vD~klde~~eis~~i~ 173 (309)
..+++.+...+++...+.+.|+
T Consensus 940 ~~~~~~~~~~~~~~~~~~~~i~ 961 (1311)
T TIGR00606 940 QDKVNDIKEKVKNIHGYMKDIE 961 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 314
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=45.01 E-value=1.5e+02 Score=26.72 Aligned_cols=69 Identities=17% Similarity=0.106 Sum_probs=40.4
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHH
Q 021664 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGV 218 (309)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV 218 (309)
++...|+.++.+|.....+...+-+.-.++-.++..+|.-+..+=..=.+|+..|..+-..-+.+..+.
T Consensus 18 e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ls~~E~~L~~~L~~~~~~~~~~~~~~ 86 (200)
T cd07624 18 KMNEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQLWSASETELAPLLEGVSSAVERCTAAL 86 (200)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777777777777666665555443333334444444443333333333
No 315
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=44.99 E-value=2.1e+02 Score=24.88 Aligned_cols=84 Identities=13% Similarity=0.291 Sum_probs=61.9
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc--hhhhhhhHHH----HHHHH
Q 021664 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR--SKLIGDEFQS----VRDIV 197 (309)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~d--l~~ig~Dv~~----v~~~V 197 (309)
.++.+=.+++..+++++-..=.+-+....++-+..+..|+++.+....+.+....+..+ +.-++++.+. .....
T Consensus 23 ~~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~ 102 (126)
T PF09403_consen 23 ASVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLL 102 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 56666678888888888777788888999999999999999999999999887777654 3344444444 34455
Q ss_pred HHHHHHHHHh
Q 021664 198 QTLESKLIEI 207 (309)
Q Consensus 198 ~~Le~Ki~~i 207 (309)
..||.+|..-
T Consensus 103 ~~L~k~I~~~ 112 (126)
T PF09403_consen 103 NKLDKEIAEQ 112 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 316
>PRK01919 tatB sec-independent translocase; Provisional
Probab=44.99 E-value=1.5e+02 Score=27.17 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhH
Q 021664 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKI 155 (309)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI 155 (309)
..|-.+...+++-+.++-..+...|.++..-+
T Consensus 23 ekLP~~aRtlGk~i~k~Rr~~~d~K~ev~~E~ 54 (169)
T PRK01919 23 ERLPRVARTAGALFGRAQRYINDVKAEVSREI 54 (169)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888888888888776554
No 317
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=44.88 E-value=3.5e+02 Score=27.50 Aligned_cols=46 Identities=15% Similarity=0.241 Sum_probs=28.9
Q ss_pred chhhhhhhHHHHHHHH-HHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHH
Q 021664 118 MMFATRRSLSDACNSV-ARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVE 167 (309)
Q Consensus 118 lMfVTKRnms~Av~sv-~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~e 167 (309)
||+=-|.|.=|-...+ -++|.. +...+|.|..|=..-|.|..++-.
T Consensus 126 l~~~vkq~FldpL~~l~~~elK~----i~hh~KKLEgRRldyD~kkkk~~K 172 (366)
T KOG1118|consen 126 LDDNVKQNFLDPLQNLQLKELKD----IQHHRKKLEGRRLDYDYKKKKQGK 172 (366)
T ss_pred HHHHHHHHHhHHHHHhhHHHHHH----HHHHHHHhhhhhhHHHHHHHHhcc
Confidence 5666666666666555 455543 455677787777777776665543
No 318
>PF07957 DUF3294: Protein of unknown function (DUF3294); InterPro: IPR012917 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of mitochondrial ribosomal proteins, which appears to be fungal specific [].
Probab=44.84 E-value=51 Score=31.25 Aligned_cols=66 Identities=18% Similarity=0.211 Sum_probs=46.0
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHH--------HHHHHhhhhhhhHhHHH
Q 021664 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE--------SKLIEIEGKQDITTLGV 218 (309)
Q Consensus 147 aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le--------~Ki~~ie~kQd~Tn~GV 218 (309)
|-.+|.++|+.|...+..|..+...|.+.|-+++- ..++.-|..++ .+-..++..+-.||.-+
T Consensus 5 tle~Lk~qV~~L~~lV~KQs~lIskTGq~vlelQv---------~~~K~~~~~~~~~~~~~~~~~~~~~d~~D~aTNeDL 75 (216)
T PF07957_consen 5 TLEELKKQVDELQALVKKQSKLISKTGQQVLELQV---------KKQKRDVNSFDKSFWPKSSSKQAQIDMSDYATNEDL 75 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhcccccccccccCcCCCccccccccchhH
Confidence 45788899999999999999999999999877763 34444444444 34455556666666644
Q ss_pred HHH
Q 021664 219 KKL 221 (309)
Q Consensus 219 ~~L 221 (309)
--|
T Consensus 76 VQL 78 (216)
T PF07957_consen 76 VQL 78 (216)
T ss_pred HHH
Confidence 333
No 319
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=44.78 E-value=1.5e+02 Score=29.72 Aligned_cols=22 Identities=14% Similarity=0.312 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhh
Q 021664 187 GDEFQSVRDIVQTLESKLIEIE 208 (309)
Q Consensus 187 g~Dv~~v~~~V~~Le~Ki~~ie 208 (309)
++||+.+|+.+..||.++.+++
T Consensus 288 RsElDe~~krL~ELrR~vr~L~ 309 (320)
T TIGR01834 288 RSELDEAHQRIQQLRREVKSLK 309 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666654
No 320
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=44.71 E-value=3.3e+02 Score=27.02 Aligned_cols=32 Identities=13% Similarity=0.241 Sum_probs=18.0
Q ss_pred HHHHHhhhchhhhhhhHHHHHHHHHHHHHHHH
Q 021664 174 EEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (309)
Q Consensus 174 ~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~ 205 (309)
+++...+..++++..-...++.++.+++.+..
T Consensus 141 ~~L~~~~~~l~q~~~k~~~~q~~l~~~~~~~~ 172 (301)
T PF06120_consen 141 RELAVAQERLEQMQSKASETQATLNDLTEQRI 172 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555666666666555544
No 321
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=44.42 E-value=1.1e+02 Score=28.60 Aligned_cols=59 Identities=19% Similarity=0.330 Sum_probs=38.9
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhh--chhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021664 151 LSSKITSVDRDVNKIVEISQATQEEVTILRG--RSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (309)
Q Consensus 151 LsqRI~~vD~klde~~eis~~i~~eV~~v~~--dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (309)
|-..|.++..|+...+.....+..|+.++.. .+++++.++++++..|.+.+.||..+-+
T Consensus 84 ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 84 LDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666655555555555555555554 3467788888888888888888887754
No 322
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=44.27 E-value=4.3e+02 Score=32.60 Aligned_cols=46 Identities=17% Similarity=0.399 Sum_probs=20.2
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHH---HHHHHHhHhhhhhhHHHHHH
Q 021664 122 TRRSLSDACNSVARQLEDVYSSISAA---QRQLSSKITSVDRDVNKIVE 167 (309)
Q Consensus 122 TKRnms~Av~sv~KqLeqVs~sL~~a---KrhLsqRI~~vD~klde~~e 167 (309)
.+|.+.+-|..+.++++.+-..+... |.++..+|.++.+.+..+.+
T Consensus 930 ~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e 978 (1930)
T KOG0161|consen 930 KKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDE 978 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555544443333 22333444444444444333
No 323
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=44.17 E-value=81 Score=32.81 Aligned_cols=29 Identities=14% Similarity=0.101 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhHhH
Q 021664 188 DEFQSVRDIVQTLESKLIEIEGKQDITTL 216 (309)
Q Consensus 188 ~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~ 216 (309)
+|+..+-.+|..|+.+|++.-++-|.-.+
T Consensus 317 ~~l~~le~~~~~mgPlid~~Le~idrk~~ 345 (462)
T KOG2199|consen 317 DDLLDLEAAVHQMGPLIDRKLEKIDRKHE 345 (462)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence 45666666666666666665555444333
No 324
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=44.03 E-value=2.4e+02 Score=28.13 Aligned_cols=49 Identities=14% Similarity=0.238 Sum_probs=33.2
Q ss_pred hhhHHHHHHHHHHHHHHH-------HHhhhchhhhhhhHHHHHHHHHHHHHHHHHh
Q 021664 159 DRDVNKIVEISQATQEEV-------TILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (309)
Q Consensus 159 D~klde~~eis~~i~~eV-------~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (309)
|..+++.+-.-..|++|= -|++.-|+.-+.+|++++++|+++-..|..=
T Consensus 88 etEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ek 143 (305)
T PF15290_consen 88 ETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEK 143 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 444444444444455541 2566778899999999999999988777643
No 325
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=43.95 E-value=1.8e+02 Score=31.46 Aligned_cols=80 Identities=15% Similarity=0.209 Sum_probs=62.5
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHh
Q 021664 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARE 227 (309)
Q Consensus 148 KrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~ 227 (309)
|++|.+.|++|...+.++..-.+.+..|+.......++.-+++.+.++----|+..=...+..+..-.+=...|+.+++.
T Consensus 81 r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~~ 160 (632)
T PF14817_consen 81 RRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVEQ 160 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999998899999999988888899999999998877777776666666555555555555555543
No 326
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=43.89 E-value=2.3e+02 Score=30.30 Aligned_cols=97 Identities=16% Similarity=0.254 Sum_probs=63.0
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHH----------HH------HHHHHhhhchhhh
Q 021664 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQA----------TQ------EEVTILRGRSKLI 186 (309)
Q Consensus 123 KRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~----------i~------~eV~~v~~dl~~i 186 (309)
+|-.-.-++.+-+-|+.+++.+.. ......+|.++|+.+|...+-.+. .+ .+.-+...|+|+|
T Consensus 337 ~rEvl~~~d~ie~ml~~~~~~~~~-~~~~~~~i~~~e~~vd~~~~~Ik~YL~~ls~~~Lse~es~r~~~iid~a~~lE~I 415 (533)
T COG1283 337 AREVLRLGDSIEQMLERLYEYIEG-DAKKVKEIRKLEDAVDRLYEEIKLYLARLSKEGLSEEESRRWAEIIDAAINLEHI 415 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhHHHH
Confidence 444455566677778888888887 777788888888888876554332 11 2244566677777
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHH
Q 021664 187 GDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAR 226 (309)
Q Consensus 187 g~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~ 226 (309)
|+-++.+ +.-.+. .++.+-.++-.|..-||++.+
T Consensus 416 gDiie~l---~~~~~k---k~~~~~~fse~~~~el~~l~~ 449 (533)
T COG1283 416 GDIIERL---LELADK---KIANGRAFSEDGLEELDALFA 449 (533)
T ss_pred HHHHHHH---HHHHHH---HHhcCCCCCHHHHHHHHHHHH
Confidence 7766663 233333 345667777888888877554
No 327
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=43.86 E-value=3.3e+02 Score=27.36 Aligned_cols=15 Identities=7% Similarity=0.268 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhcC
Q 021664 61 LLAEVSSVQQELSHV 75 (309)
Q Consensus 61 L~aQV~~LaqEl~~L 75 (309)
|..|+..+++++++.
T Consensus 166 l~~ql~~~~~~L~~a 180 (498)
T TIGR03007 166 IDEQIKTYEKKLEAA 180 (498)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777888887777765
No 328
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=43.80 E-value=1.7e+02 Score=26.32 Aligned_cols=15 Identities=13% Similarity=0.348 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHhcC
Q 021664 61 LLAEVSSVQQELSHV 75 (309)
Q Consensus 61 L~aQV~~LaqEl~~L 75 (309)
|-..|+.+.++|..+
T Consensus 28 l~q~ird~e~~l~~a 42 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKA 42 (221)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555677777777666
No 329
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=43.73 E-value=2.5e+02 Score=28.36 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 021664 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSS 153 (309)
Q Consensus 123 KRnms~Av~sv~KqLeqVs~sL~~aKrhLsq 153 (309)
-.+++...+++=..|.+=++--..|.+|..+
T Consensus 201 l~~le~ema~lL~sLt~HfDqC~~a~~~~eg 231 (412)
T PF04108_consen 201 LHSLEQEMASLLESLTNHFDQCVTAVRHTEG 231 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455555555555555555555666665544
No 330
>PLN02320 seryl-tRNA synthetase
Probab=43.66 E-value=1.3e+02 Score=31.69 Aligned_cols=92 Identities=14% Similarity=0.259 Sum_probs=46.9
Q ss_pred ecccCcCcchhhhhhhHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh
Q 021664 110 WKGWKLPDMMFATRRSLSDACNSVARQ-----LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (309)
Q Consensus 110 WKGws~SDlMfVTKRnms~Av~sv~Kq-----LeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~ 184 (309)
||-. -|+=|. |.|-.....++.+- +|++- .+-..+|.+..+++.+. .+.++++++|+.. .-..+.+
T Consensus 63 ~~~m--lD~k~i-r~n~~~v~~~l~~R~~~~~vd~l~-~ld~~~r~~~~~~~~lr---~ern~~sk~i~~~--~~~~~~~ 133 (502)
T PLN02320 63 WKAA--IDFKWI-RDNKEAVAINIRNRNSNANLELVL-ELYENMLALQKEVERLR---AERNAVANKMKGK--LEPSERQ 133 (502)
T ss_pred cccc--cCHHHH-HhCHHHHHHHHHhcCCCcCHHHHH-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHhh--hCCCCHH
Confidence 6653 455554 44555444444432 34432 23444566666665554 4566677777652 2223444
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhh
Q 021664 185 LIGDEFQSVRDIVQTLESKLIEIEGK 210 (309)
Q Consensus 185 ~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (309)
.+..++..+++-+..||.++..++.+
T Consensus 134 ~l~~~~k~lk~~i~~le~~~~~~~~~ 159 (502)
T PLN02320 134 ALVEEGKNLKEGLVTLEEDLVKLTDE 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555443
No 331
>PLN03223 Polycystin cation channel protein; Provisional
Probab=43.65 E-value=1.2e+02 Score=36.02 Aligned_cols=91 Identities=26% Similarity=0.386 Sum_probs=59.6
Q ss_pred hhhhHH--HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHH
Q 021664 122 TRRSLS--DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT 199 (309)
Q Consensus 122 TKRnms--~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~ 199 (309)
.||.|. ||-+.++.-|+||. .|+-++..|...|+.|.-++|-++.+.+.=..+=+ + ..-|..-...|+.-=..
T Consensus 767 ~~r~l~~~~~~~~l~~~~~~v~-~~~t~q~~~~~~~~~~~~~~~~~~~~a~~~~~d~~-~---~~~i~~g~~d~~~~~~~ 841 (1634)
T PLN03223 767 NRRRLQQTNAAATLTNILTQVG-TLSTTQTSLDTQIETLKTQQDRANQEAEAHHADNS-L---ETLINAGFTDIKAGQAA 841 (1634)
T ss_pred hhhhhhhcchHHHHHHHHHHhh-hhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccch-H---HHHHHhchhHHHhHHHH
Confidence 367665 67777777777775 47788888999998888887777666554332210 0 11222233445555567
Q ss_pred HHHHHHHhhhhhhhHhHH
Q 021664 200 LESKLIEIEGKQDITTLG 217 (309)
Q Consensus 200 Le~Ki~~ie~kQd~Tn~G 217 (309)
||.||++|-+||+.+...
T Consensus 842 ~~~~~~~il~kq~~al~~ 859 (1634)
T PLN03223 842 LEAKLDEILGKQQQALAA 859 (1634)
T ss_pred HHhHHHHHHHHHHHHHHH
Confidence 889999999998876543
No 332
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=43.63 E-value=2.6e+02 Score=25.62 Aligned_cols=15 Identities=7% Similarity=0.395 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhcC
Q 021664 61 LLAEVSSVQQELSHV 75 (309)
Q Consensus 61 L~aQV~~LaqEl~~L 75 (309)
++----.|..+|+.+
T Consensus 48 lm~~f~~l~e~v~~l 62 (190)
T PF05266_consen 48 LMVTFANLAEKVKKL 62 (190)
T ss_pred HHHHHHHHHHHHHHc
Confidence 455556666666666
No 333
>PF05549 Allexi_40kDa: Allexivirus 40kDa protein; InterPro: IPR008398 This family of sequences contains the 40 kDa polypeptides from garlic viruses (Allexiviruses), which do not resemble any other plant virus gene products reported so far []. Rod-shaped flexuous viruses have been isolated from garlic plants, Allium sativum. Infection by this virus creates typical mosaic symptoms. The core-like sequence of a zinc finger protein preceded by a cluster of basic amino acid residues shows similarities to the corresponding 12K proteins of the potexviruses and carlaviruses []. Viral epidemics by allexiviruses are also known to be caused by aphids and eriophyid mites (Aceria tulipae) carrying Potyviruses, Carlaviruses, and Allexiviruses [].
Probab=43.45 E-value=2.4e+02 Score=27.69 Aligned_cols=9 Identities=44% Similarity=0.799 Sum_probs=6.6
Q ss_pred CCCCCcccc
Q 021664 279 XXXIPMDLI 287 (309)
Q Consensus 279 ~~~~~~~~~ 287 (309)
+..||||.+
T Consensus 190 ~l~iPMDi~ 198 (271)
T PF05549_consen 190 SLRIPMDIR 198 (271)
T ss_pred eeecccccc
Confidence 357899876
No 334
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=43.35 E-value=2.6e+02 Score=28.29 Aligned_cols=87 Identities=15% Similarity=0.182 Sum_probs=51.4
Q ss_pred HHhhhheeeEEecccCcCcchhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHH---HHHHHHHHHHH
Q 021664 99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK---IVEISQATQEE 175 (309)
Q Consensus 99 ~iGavGYgYmwWKGws~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde---~~eis~~i~~e 175 (309)
..+++|-|+ +---..+|=|+.--.++.||-..++.-=.+|++.....+.-+.+.+++|+.-.++ -.+..+.+++.
T Consensus 73 c~aaigvG~--yGN~e~~~gv~~~~~s~~~~n~t~~~i~~~v~~~~~~l~~~v~~~l~~Le~~~~~~~~~~~~~~~~~~~ 150 (406)
T PF04906_consen 73 CCAAIGVGF--YGNSETNDGVYQLIYSLRNANHTLSGIDNLVSDTTEALNSTVEQHLTRLEEIFAKRTDLLQALQFLQQQ 150 (406)
T ss_pred HHHHHHccc--ccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 445666443 3334467778877777777777777555666666666666666666666665533 33444444555
Q ss_pred HHHhhhchhhhh
Q 021664 176 VTILRGRSKLIG 187 (309)
Q Consensus 176 V~~v~~dl~~ig 187 (309)
++.+-..++.|.
T Consensus 151 ~~~v~~~l~~l~ 162 (406)
T PF04906_consen 151 AENVVQQLDELP 162 (406)
T ss_pred HHHHHHHHhcCc
Confidence 555555444443
No 335
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=43.27 E-value=3.3e+02 Score=27.92 Aligned_cols=81 Identities=9% Similarity=0.240 Sum_probs=45.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHH-----------HHHHHHHHHHHHHHhhhchhhhhhh-------
Q 021664 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK-----------IVEISQATQEEVTILRGRSKLIGDE------- 189 (309)
Q Consensus 128 ~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde-----------~~eis~~i~~eV~~v~~dl~~ig~D------- 189 (309)
+.+..+-+...++.+++.+-|.++...+.-+-..|+| .++..+.-++|+..++.+|..+.+-
T Consensus 219 ~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~e 298 (395)
T PF10267_consen 219 EELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYE 298 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3355555666666666666666555443333333322 2334444556666666666544432
Q ss_pred -HHHHHHHHHHHHHHHHHhh
Q 021664 190 -FQSVRDIVQTLESKLIEIE 208 (309)
Q Consensus 190 -v~~v~~~V~~Le~Ki~~ie 208 (309)
...|++.++..-.||..||
T Consensus 299 RaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 299 RARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 3456677777778888888
No 336
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=43.21 E-value=1.2e+02 Score=35.57 Aligned_cols=68 Identities=16% Similarity=0.249 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021664 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (309)
Q Consensus 137 LeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (309)
++|+..+++..||.| +.+..+|-+..+-...|.+++.-...||+.+..|+..|..++..|+.+++.|.
T Consensus 1227 i~~l~~~~~~lr~~l----~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik 1294 (1758)
T KOG0994|consen 1227 IAQLASATESLRRQL----QALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIK 1294 (1758)
T ss_pred HHHHHHHHHHHHHHH----HHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555555554443 34445555555555566677777778888888888888888888888888664
No 337
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=43.13 E-value=1.8e+02 Score=26.53 Aligned_cols=21 Identities=19% Similarity=0.507 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 021664 191 QSVRDIVQTLESKLIEIEGKQ 211 (309)
Q Consensus 191 ~~v~~~V~~Le~Ki~~ie~kQ 211 (309)
..++..|..+|.+|.+|+.++
T Consensus 138 ~~i~e~IKd~de~L~~I~d~i 158 (163)
T PF03233_consen 138 KLIEELIKDFDERLKEIRDKI 158 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666667777776654
No 338
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=42.94 E-value=54 Score=32.67 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=21.5
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 021664 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSK 154 (309)
Q Consensus 119 MfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqR 154 (309)
+|++.-+..++.+.+.+++++....++..+..|.++
T Consensus 233 ~~~A~l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~ 268 (406)
T PF02388_consen 233 FFLAELNGKEYLESLQEKLEKLEKEIEKLEEKLEKN 268 (406)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred EEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455666667777777766666666655555544433
No 339
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=42.93 E-value=1.9e+02 Score=27.26 Aligned_cols=19 Identities=11% Similarity=0.207 Sum_probs=10.3
Q ss_pred hhhhhHHHHHHHHHHHHHH
Q 021664 157 SVDRDVNKIVEISQATQEE 175 (309)
Q Consensus 157 ~vD~klde~~eis~~i~~e 175 (309)
.+.+-++..+++...|+++
T Consensus 7 ~~~d~~~~l~~v~~~iK~~ 25 (205)
T PF12238_consen 7 SSKDALKALKKVLDLIKEN 25 (205)
T ss_pred hhHHHHHHHHHHHHHHccC
Confidence 3444555555555555554
No 340
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=42.78 E-value=1.7e+02 Score=31.94 Aligned_cols=72 Identities=14% Similarity=0.223 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh---hhhhhHHHHHHHHHHHHHHHHH
Q 021664 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK---LIGDEFQSVRDIVQTLESKLIE 206 (309)
Q Consensus 135 KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~---~ig~Dv~~v~~~V~~Le~Ki~~ 206 (309)
.+.+..-..+..+=+.|.-++.+|+..+++++......++++..++..+. .++.++.....-+..|+-+|.+
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e 492 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEE 492 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
No 341
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=42.75 E-value=3.4e+02 Score=26.63 Aligned_cols=80 Identities=18% Similarity=0.309 Sum_probs=57.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHH------HHHH
Q 021664 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI------VQTL 200 (309)
Q Consensus 127 s~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~------V~~L 200 (309)
.+++.+|+-.|--+...+..+-.++.++++..-..|-.. ..+.+.|...|..=..+.++|..++.. +..|
T Consensus 95 dddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~I----R~~E~sl~p~R~~r~~l~d~I~kLk~k~P~s~kl~~L 170 (271)
T PF13805_consen 95 DDDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSI----RNREESLQPSRDRRRKLQDEIAKLKYKDPQSPKLVVL 170 (271)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTTTHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHhHHHHHHHHHHHhcCCCChHHHHH
Confidence 678888888898999999999888888877666655443 334455666777777777777777754 6677
Q ss_pred HHHHHHhhhh
Q 021664 201 ESKLIEIEGK 210 (309)
Q Consensus 201 e~Ki~~ie~k 210 (309)
|..|.+.|..
T Consensus 171 eqELvraEae 180 (271)
T PF13805_consen 171 EQELVRAEAE 180 (271)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777766644
No 342
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=42.74 E-value=1.2e+02 Score=28.33 Aligned_cols=18 Identities=33% Similarity=0.661 Sum_probs=8.3
Q ss_pred HhHhhhhhhHHHHHHHHH
Q 021664 153 SKITSVDRDVNKIVEISQ 170 (309)
Q Consensus 153 qRI~~vD~klde~~eis~ 170 (309)
|||.+||.|+|++-++.+
T Consensus 121 q~~~~l~~K~D~~L~llE 138 (189)
T TIGR02132 121 QDIKSLDKKLDKILELLE 138 (189)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 444444444444444443
No 343
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=42.55 E-value=4.4e+02 Score=28.41 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=12.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Q 021664 128 DACNSVARQLEDVYSSISAAQRQL 151 (309)
Q Consensus 128 ~Av~sv~KqLeqVs~sL~~aKrhL 151 (309)
+|.+=+.+||+.+.+.|..+.+.|
T Consensus 267 ~a~~fL~~qL~~l~~~L~~aE~~l 290 (726)
T PRK09841 267 QSLEFLQRQLPEVRSELDQAEEKL 290 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555554443
No 344
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=42.54 E-value=2.7e+02 Score=25.39 Aligned_cols=41 Identities=12% Similarity=0.251 Sum_probs=17.1
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHH
Q 021664 154 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (309)
Q Consensus 154 RI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~ 194 (309)
.++....+++...+-.+..++++...+..+......++.-+
T Consensus 64 ~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~ 104 (302)
T PF10186_consen 64 EIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRR 104 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444333
No 345
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=42.51 E-value=1.1e+02 Score=28.87 Aligned_cols=76 Identities=14% Similarity=0.210 Sum_probs=38.1
Q ss_pred chhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHH-HHHHHHHhhhchhhhhhhHHHHHHH
Q 021664 118 MMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQA-TQEEVTILRGRSKLIGDEFQSVRDI 196 (309)
Q Consensus 118 lMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~-i~~eV~~v~~dl~~ig~Dv~~v~~~ 196 (309)
-|-.+||.|+++...+++.|..+++.=. .-|+.-+..|.+..+...++-.. -.+|...+.+.|...-.++++++.+
T Consensus 49 ~lv~~rkela~~~~~fs~al~~L~~~E~---t~L~~~ls~lae~~ek~~~l~~r~A~~d~l~L~e~L~~Y~r~~~A~K~~ 125 (219)
T cd07621 49 KMTRKHKDVADSYIKISAALTQLATSEP---TPLDKFLLKVAETFEKLRKLEGRVASDEDLKLSDTLRYYMRDTQAAKDL 125 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccc---chHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Confidence 3445677777777777777766665422 13333333333333333333222 2234445555555555556555543
No 346
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=42.50 E-value=1.6e+02 Score=22.85 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=8.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHH
Q 021664 132 SVARQLEDVYSSISAAQRQLS 152 (309)
Q Consensus 132 sv~KqLeqVs~sL~~aKrhLs 152 (309)
.+-.++++|.+.+...=+.+-
T Consensus 7 ~i~~~v~~v~~im~~Ni~~ll 27 (89)
T PF00957_consen 7 QIQEQVEEVKNIMRENIDKLL 27 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444333333
No 347
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=42.35 E-value=1.7e+02 Score=26.68 Aligned_cols=79 Identities=10% Similarity=0.128 Sum_probs=48.4
Q ss_pred cCcchhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHH-HHHHHHHHHHhhhchhhhhhhHHHH
Q 021664 115 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEI-SQATQEEVTILRGRSKLIGDEFQSV 193 (309)
Q Consensus 115 ~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~ei-s~~i~~eV~~v~~dl~~ig~Dv~~v 193 (309)
|.|.+=--|+.++++-+.+- -|+.=+.-|...=..+++.+.-+..+..++-++ .+.+.++|.+++.-++..+.|+.-+
T Consensus 63 ~~~~~~g~kk~~~~~~eele-rLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~~d~~~l 141 (157)
T COG3352 63 VKIEIEGQKKQLQDIKEELE-RLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVIKDLREL 141 (157)
T ss_pred ccccccchhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 55555555666666666553 344445555555555666666666666666666 6667777777777666666666554
Q ss_pred H
Q 021664 194 R 194 (309)
Q Consensus 194 ~ 194 (309)
.
T Consensus 142 ~ 142 (157)
T COG3352 142 Y 142 (157)
T ss_pred c
Confidence 3
No 348
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=42.31 E-value=4.1e+02 Score=27.49 Aligned_cols=66 Identities=8% Similarity=0.204 Sum_probs=41.9
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhh-hhHHHHHHHHHHHHHHHHHhhhchhh
Q 021664 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVD-RDVNKIVEISQATQEEVTILRGRSKL 185 (309)
Q Consensus 120 fVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD-~klde~~eis~~i~~eV~~v~~dl~~ 185 (309)
=--|+.|++-+..+-+.+|.+.+.+...|+...+|==+.. .+|+.+..-......++.+++.-+..
T Consensus 205 ~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~ 271 (424)
T PF03915_consen 205 ESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKT 271 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457889999999999999999999999999988733332 22333333333444444444444333
No 349
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=42.28 E-value=3.2e+02 Score=26.23 Aligned_cols=31 Identities=19% Similarity=0.409 Sum_probs=11.9
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhhchh
Q 021664 154 KITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (309)
Q Consensus 154 RI~~vD~klde~~eis~~i~~eV~~v~~dl~ 184 (309)
|+..+.+.|.+..+..+.++++...+++.+.
T Consensus 104 r~~~le~el~~l~~~~~~l~~~i~~l~~~~~ 134 (239)
T COG1579 104 RINSLEDELAELMEEIEKLEKEIEDLKERLE 134 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 350
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=42.00 E-value=4.1e+02 Score=31.09 Aligned_cols=43 Identities=16% Similarity=0.129 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 021664 169 SQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (309)
Q Consensus 169 s~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (309)
.++++.++.+++..+.....++...+.-...++.++.+.+.+-
T Consensus 923 ~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~ 965 (1353)
T TIGR02680 923 VDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKR 965 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777777777777776666666666665554
No 351
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=42.00 E-value=1.8e+02 Score=30.57 Aligned_cols=58 Identities=21% Similarity=0.352 Sum_probs=29.5
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021664 145 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (309)
Q Consensus 145 ~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (309)
.+--+.|.+|-+++|.++++.. +.+=.++..+.++...+.+.++..+..|..+++.+-
T Consensus 86 ~~eN~~L~~r~~~id~~i~~av------~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~~ 143 (472)
T TIGR03752 86 KAENERLQKREQSIDQQIQQAV------QSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGVL 143 (472)
T ss_pred HHHHHHHHHhhhhHHHHHHHHH------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3333444555555554444332 222234444555556666666666666666665443
No 352
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=42.00 E-value=2.6e+02 Score=25.42 Aligned_cols=32 Identities=13% Similarity=0.235 Sum_probs=24.6
Q ss_pred chhhhhhhHHHHHHHHHHhHHHHHHHHHHHHH
Q 021664 118 MMFATRRSLSDACNSVARQLEDVYSSISAAQR 149 (309)
Q Consensus 118 lMfVTKRnms~Av~sv~KqLeqVs~sL~~aKr 149 (309)
-+.-.-..+.+-++.+-+.++.+.+.|..+|.
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~ 97 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKK 97 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777777888888888888888888877753
No 353
>PRK11115 transcriptional regulator PhoU; Provisional
Probab=41.97 E-value=2.4e+02 Score=25.13 Aligned_cols=46 Identities=20% Similarity=0.308 Sum_probs=35.8
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH
Q 021664 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV 166 (309)
Q Consensus 121 VTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~ 166 (309)
-.|+.+.+-+..+.+.|+.+.+++..-..++.++|...|+.+|+..
T Consensus 20 ~~~~el~~M~~~v~~ml~~~~~al~~~d~~~~~~i~~~e~~id~l~ 65 (236)
T PRK11115 20 SIRTQVLTMGGLVEQQLSDAITAMHNQDAELAKRVIEGDHKVNMME 65 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHChHHHHHHH
Confidence 3567777778888888888888887777777888888888777765
No 354
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=41.94 E-value=2e+02 Score=28.09 Aligned_cols=8 Identities=38% Similarity=0.617 Sum_probs=3.5
Q ss_pred hhheeeEE
Q 021664 102 AVGYGYVW 109 (309)
Q Consensus 102 avGYgYmw 109 (309)
|+|+.|.|
T Consensus 195 Aa~~Lc~W 202 (344)
T PF12777_consen 195 AAGSLCKW 202 (344)
T ss_dssp THHHHHHH
T ss_pred cchHHHHH
Confidence 44444444
No 355
>PRK10807 paraquat-inducible protein B; Provisional
Probab=41.91 E-value=87 Score=32.90 Aligned_cols=22 Identities=0% Similarity=0.105 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhHhhhhhhH
Q 021664 141 YSSISAAQRQLSSKITSVDRDV 162 (309)
Q Consensus 141 s~sL~~aKrhLsqRI~~vD~kl 162 (309)
-+.+.++=+++.+-+++++..+
T Consensus 438 ~~~l~~tL~~~~~tl~~l~~~l 459 (547)
T PRK10807 438 IEQATSTLSESQRTMRELQTTL 459 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444
No 356
>PRK01156 chromosome segregation protein; Provisional
Probab=41.72 E-value=2.9e+02 Score=30.10 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhh
Q 021664 136 QLEDVYSSISAAQRQLSSKITSVDR 160 (309)
Q Consensus 136 qLeqVs~sL~~aKrhLsqRI~~vD~ 160 (309)
.+++.++.+..+.+.+..+|..++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~ei~~le~ 187 (895)
T PRK01156 163 SLERNYDKLKDVIDMLRAEISNIDY 187 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544443
No 357
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=41.64 E-value=3.4e+02 Score=26.34 Aligned_cols=69 Identities=19% Similarity=0.215 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhHhhhhhh----HHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 021664 142 SSISAAQRQLSSKITSVDRD----VNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (309)
Q Consensus 142 ~sL~~aKrhLsqRI~~vD~k----lde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (309)
+.|.....++.+.|+.+..+ +-+..+....+.+++..+...++++..++.++.........+...+..+
T Consensus 17 ~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~~~~ 89 (338)
T PF04124_consen 17 QSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQKISEE 89 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433 2334555566666666666666666666666666555555555544433
No 358
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=41.62 E-value=1.8e+02 Score=29.14 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=24.8
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 021664 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSS 153 (309)
Q Consensus 123 KRnms~Av~sv~KqLeqVs~sL~~aKrhLsq 153 (309)
+++..++..-+.+|++++.+.|..+.+.|..
T Consensus 156 ~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~ 186 (498)
T TIGR03007 156 RQDSDSAQRFIDEQIKTYEKKLEAAENRLKA 186 (498)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778888888999998888888877764
No 359
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=41.54 E-value=1.2e+02 Score=33.16 Aligned_cols=53 Identities=6% Similarity=0.169 Sum_probs=45.8
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHH
Q 021664 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (309)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~ 202 (309)
..++.+..+-.+++.|..+-.++.+=+++-+.+++.|..|+..++.--..+.-
T Consensus 72 ~es~~~~~lhNqi~~cd~Vl~rme~~L~~FQ~~L~sissDI~~lqekS~~m~~ 124 (683)
T KOG1961|consen 72 KESENLASLHNQIRACDSVLERMETMLSSFQSDLSSISSDIKILQEKSNDMQL 124 (683)
T ss_pred HhhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHH
Confidence 35568889999999999999999999999999999999999999966544443
No 360
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=41.46 E-value=87 Score=27.26 Aligned_cols=60 Identities=13% Similarity=0.268 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhH--HHHHHHHHHHHHHHHHhhhchhhhhh
Q 021664 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDV--NKIVEISQATQEEVTILRGRSKLIGD 188 (309)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~kl--de~~eis~~i~~eV~~v~~dl~~ig~ 188 (309)
.|..-+..+..+|..+... -++|...+..+...+ ++..+...+.++|+..+...|..+..
T Consensus 76 ~ld~ei~~L~~el~~l~~~----~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKE----VKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555444333 344445555555544 56666666667777666666666655
No 361
>PRK09039 hypothetical protein; Validated
Probab=41.45 E-value=3.6e+02 Score=26.62 Aligned_cols=49 Identities=12% Similarity=0.203 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHH
Q 021664 170 QATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGV 218 (309)
Q Consensus 170 ~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV 218 (309)
...+.+.++.+.++..+..+|+.++.-...||.-|+..|..-.-...-+
T Consensus 126 ~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i 174 (343)
T PRK09039 126 DSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKI 174 (343)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555555554433333333
No 362
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=41.45 E-value=2.5e+02 Score=30.79 Aligned_cols=34 Identities=18% Similarity=0.373 Sum_probs=21.5
Q ss_pred chhhhhhhHHHHHHHH----HHhHHHHHHHHHHHHHHH
Q 021664 118 MMFATRRSLSDACNSV----ARQLEDVYSSISAAQRQL 151 (309)
Q Consensus 118 lMfVTKRnms~Av~sv----~KqLeqVs~sL~~aKrhL 151 (309)
.||+|.+.|.+.+... .+.++++..-+..+..|+
T Consensus 159 ~aF~~n~~l~~~v~~~~~~~~~~~~Dl~~~l~~~~~qi 196 (806)
T PF05478_consen 159 CAFVANQQLSTGVDDTPNTVNSTLDDLRTFLNDTPQQI 196 (806)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4899998887777644 455555555555555544
No 363
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=41.40 E-value=1.7e+02 Score=28.11 Aligned_cols=65 Identities=11% Similarity=0.139 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhh-------hHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHH
Q 021664 162 VNKIVEISQATQEEVTILRGRSKLIGD-------EFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAR 226 (309)
Q Consensus 162 lde~~eis~~i~~eV~~v~~dl~~ig~-------Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~ 226 (309)
+++..+-.+.+++.+..++..++.... -.+.+...++..+.++..++....-+..-...+|+|.+
T Consensus 276 ~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~yfg 347 (370)
T PF02181_consen 276 LDELEQDIKELEKGLEKIKKELEAIEKDEEDDDKFKEKMKEFLEEAETKLDELQELYEELEEAFKQLLQYFG 347 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344444444444444444444443333 46677888999999999999999999999999999883
No 364
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=41.29 E-value=1.1e+02 Score=25.99 Aligned_cols=32 Identities=19% Similarity=0.386 Sum_probs=23.7
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 021664 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSS 153 (309)
Q Consensus 122 TKRnms~Av~sv~KqLeqVs~sL~~aKrhLsq 153 (309)
-|+++=++++.+.+|+.++++.+++-|.++..
T Consensus 2 dk~elfd~l~~le~~l~~l~~el~~LK~~~~e 33 (110)
T PRK13169 2 DKKEIFDALDDLEQNLGVLLKELGALKKQLAE 33 (110)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777778888888888887777777776654
No 365
>PRK15396 murein lipoprotein; Provisional
Probab=41.19 E-value=85 Score=25.28 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=16.8
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhh
Q 021664 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL 185 (309)
Q Consensus 151 LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ 185 (309)
|+..++.|..|+|+...-...++.++..++++-.+
T Consensus 30 LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~r 64 (78)
T PRK15396 30 LSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAAR 64 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555555555555444443333
No 366
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=41.16 E-value=1.2e+02 Score=23.09 Aligned_cols=11 Identities=9% Similarity=0.540 Sum_probs=4.2
Q ss_pred HhHhhhhhhHH
Q 021664 153 SKITSVDRDVN 163 (309)
Q Consensus 153 qRI~~vD~kld 163 (309)
.++.+++-.++
T Consensus 7 n~~~~~~~~i~ 17 (55)
T PF05377_consen 7 NELPRIESSIN 17 (55)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 367
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=41.15 E-value=4.2e+02 Score=27.24 Aligned_cols=32 Identities=28% Similarity=0.320 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhHhhhhhhHH-HHHHHHHHHHHH
Q 021664 144 ISAAQRQLSSKITSVDRDVN-KIVEISQATQEE 175 (309)
Q Consensus 144 L~~aKrhLsqRI~~vD~kld-e~~eis~~i~~e 175 (309)
+.....+|...|++|..++. +...+.+..++|
T Consensus 224 ik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEE 256 (395)
T PF10267_consen 224 IKESQSRLEESIEKLKEQYQREYQFILEALQEE 256 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444455555555554332 444444444444
No 368
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.12 E-value=2.4e+02 Score=30.84 Aligned_cols=78 Identities=13% Similarity=0.295 Sum_probs=59.8
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHH
Q 021664 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (309)
Q Consensus 123 KRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~ 202 (309)
||||..- +-+++=+..+..-.+=+++..|+++|+..+++++-....++.+.+....+...+-...+.+++--..||.
T Consensus 51 RRnLr~~---iE~~~l~iN~e~l~ef~~i~~~l~~v~e~v~km~~t~~~l~s~ls~~k~~t~dli~~t~~l~~e~~~le~ 127 (655)
T KOG3758|consen 51 RRNLRSD---IESRLLKINEEFLKEFKEIKRRLDRVSEDVEKMANTCDKLKSNLSTSKATTQDLIQKTETLKEEAAQLEL 127 (655)
T ss_pred HhhhhhH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 7877654 4456666677777778889999999999999999999999999988888877766666666644444444
Q ss_pred H
Q 021664 203 K 203 (309)
Q Consensus 203 K 203 (309)
|
T Consensus 128 r 128 (655)
T KOG3758|consen 128 R 128 (655)
T ss_pred H
Confidence 4
No 369
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=41.02 E-value=2.9e+02 Score=25.42 Aligned_cols=41 Identities=15% Similarity=0.240 Sum_probs=32.5
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhh
Q 021664 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVD 159 (309)
Q Consensus 119 MfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD 159 (309)
..-.|+.+.+.+..+.|.+...+..|..+|+.--++=..++
T Consensus 97 ~~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e 137 (239)
T cd07647 97 QKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKD 137 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888899999999999999999999988776644443
No 370
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=41.00 E-value=2.5e+02 Score=30.77 Aligned_cols=65 Identities=15% Similarity=0.237 Sum_probs=50.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHH
Q 021664 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 191 (309)
Q Consensus 127 s~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~ 191 (309)
++-+..+--..++|+.+|..+=.++.+|+=++...++.+..=....++++..++++++....|-.
T Consensus 37 s~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~~e~~t~ 101 (766)
T PF10191_consen 37 SSLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQEQMASVQEEIKAVEQDTA 101 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHH
Confidence 33333333456788888888889999999999999998888888888888888888877666544
No 371
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=40.99 E-value=93 Score=26.49 Aligned_cols=19 Identities=16% Similarity=-0.085 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 021664 190 FQSVRDIVQTLESKLIEIE 208 (309)
Q Consensus 190 v~~v~~~V~~Le~Ki~~ie 208 (309)
++.++++-..|+.+++.++
T Consensus 94 i~~L~~~~~~L~~~i~~~~ 112 (131)
T cd04786 94 EARLAQNKAQLLVLIDLIE 112 (131)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3333333333344443333
No 372
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=40.74 E-value=31 Score=28.37 Aligned_cols=18 Identities=39% Similarity=0.739 Sum_probs=12.8
Q ss_pred HHHhhhheeeEEecccCc
Q 021664 98 VVIVAVGYGYVWWKGWKL 115 (309)
Q Consensus 98 a~iGavGYgYmwWKGws~ 115 (309)
+++.++=++|.|||-|+.
T Consensus 11 ~~v~~~i~~y~~~k~~ka 28 (87)
T PF10883_consen 11 GAVVALILAYLWWKVKKA 28 (87)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344566678999998853
No 373
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=40.74 E-value=1.4e+02 Score=32.01 Aligned_cols=99 Identities=15% Similarity=0.248 Sum_probs=54.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHH----------hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHH---HH
Q 021664 132 SVARQLEDVYSSISAAQRQLSS----------KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI---VQ 198 (309)
Q Consensus 132 sv~KqLeqVs~sL~~aKrhLsq----------RI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~---V~ 198 (309)
.+.+.|+..+..|..+..+|.. |++.+..+|.....+.+--.-.+.++-.-..++..+++.+... ..
T Consensus 266 ~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~ 345 (557)
T COG0497 266 ELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLE 345 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 3444444444444444444443 6666666666666666555555666666666666666666554 55
Q ss_pred HHHHHHHHhhhhhhhHhHHHHHHH-HHHHhhcc
Q 021664 199 TLESKLIEIEGKQDITTLGVKKLC-DRARELEN 230 (309)
Q Consensus 199 ~Le~Ki~~ie~kQd~Tn~GV~~LC-~f~~~~~~ 230 (309)
.||.++..+..+=..+..-+-..= +++..++.
T Consensus 346 ~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~ 378 (557)
T COG0497 346 ALEKEVKKLKAELLEAAEALSAIRKKAAKELEK 378 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777776665444444443332 34444443
No 374
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=40.69 E-value=2.5e+02 Score=24.62 Aligned_cols=45 Identities=11% Similarity=0.223 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh
Q 021664 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (309)
Q Consensus 140 Vs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~ 184 (309)
+.+.|....+.+..||+.|...|++...-+..+.+-|..++.-+.
T Consensus 23 i~~~L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~ 67 (146)
T PF08702_consen 23 IQDFLDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLR 67 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 567788899999999999999999988888888777776665443
No 375
>PRK13293 F420-0--gamma-glutamyl ligase; Reviewed
Probab=40.69 E-value=23 Score=33.94 Aligned_cols=73 Identities=19% Similarity=0.298 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhcC-CCceEEEeCCCCCCCCchhHHHHHHhhhheeeEE-ecccC--cCcchhhhhhhHHHHHHHHHH
Q 021664 63 AEVSSVQQELSHV-PRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVW-WKGWK--LPDMMFATRRSLSDACNSVAR 135 (309)
Q Consensus 63 aQV~~LaqEl~~L-sr~iTVvn~~ssg~gg~~y~l~a~iGavGYgYmw-WKGws--~SDlMfVTKRnms~Av~sv~K 135 (309)
+--++|+++|++. ...+.|+-++|-|+.-+....-+++|+.|..=+| |+|-+ |---|.+|..+.+|-.++.+.
T Consensus 127 ~SA~~ir~~l~~~~g~~v~VIItDt~gr~~R~G~t~vAIG~aGi~~l~d~rG~~D~~G~~L~vT~~avaDelAaaA~ 203 (245)
T PRK13293 127 ESAERIREGLEELTGKKVGVIITDTNGRPFRKGQRGVAIGVAGIPALWDWRGEKDLFGRELETTEVAVADELAAAAN 203 (245)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEcCCCcccccCCcceeeeccCchHHHhhcCCcCCCCCeeechHHHHHHHHHHHHH
Confidence 4467889999998 7788888887556543334445678888877777 87762 444688999998887766543
No 376
>PHA03395 p10 fibrous body protein; Provisional
Probab=40.63 E-value=78 Score=26.21 Aligned_cols=8 Identities=25% Similarity=0.455 Sum_probs=3.2
Q ss_pred hhhhhhHH
Q 021664 156 TSVDRDVN 163 (309)
Q Consensus 156 ~~vD~kld 163 (309)
..||+|+|
T Consensus 14 kavd~KVd 21 (87)
T PHA03395 14 KAVSDKVD 21 (87)
T ss_pred HHHhhHHH
Confidence 33444443
No 377
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=40.60 E-value=28 Score=24.02 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=21.6
Q ss_pred eeEEecccCcCcchhhhhhhHHHH
Q 021664 106 GYVWWKGWKLPDMMFATRRSLSDA 129 (309)
Q Consensus 106 gYmwWKGws~SDlMfVTKRnms~A 129 (309)
-++.|+|++-.|-.+++..+|.++
T Consensus 22 y~VkW~g~~~~~~tWe~~~~l~~~ 45 (55)
T cd00024 22 YLVKWKGYSYSEDTWEPEENLEDC 45 (55)
T ss_pred EEEEECCCCCccCccccHHHhCch
Confidence 368999999999999999999876
No 378
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=40.50 E-value=1.5e+02 Score=21.79 Aligned_cols=34 Identities=9% Similarity=0.230 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHH
Q 021664 161 DVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (309)
Q Consensus 161 klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le 201 (309)
.|..|.|.-+.+.+.+ ..+...+...+.++..++
T Consensus 30 ~L~~Qre~L~~~~~kl-------~~i~~~l~~s~~~l~~I~ 63 (66)
T PF12352_consen 30 DLRSQREQLKRVRDKL-------DDIDSNLPKSNSLLKRIS 63 (66)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHhhHHHHHHHHHH
Confidence 3444444444444444 344444455555544443
No 379
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=40.49 E-value=89 Score=29.79 Aligned_cols=44 Identities=11% Similarity=0.288 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 021664 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR 182 (309)
Q Consensus 139 qVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~d 182 (309)
.+=.-|.+.|..+.+|...|...+.++.+.....+.||..+|.|
T Consensus 79 siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 79 SILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788899999999999999999999999999999777776
No 380
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=40.48 E-value=1.5e+02 Score=31.58 Aligned_cols=66 Identities=24% Similarity=0.296 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHH
Q 021664 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (309)
Q Consensus 138 eqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~K 203 (309)
++++..|+++....-+.|-..|.+.++..+-......||.++-.-++.+..++..+++-+..+|.+
T Consensus 8 ~~L~~eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~q 73 (701)
T PF09763_consen 8 ERLSKELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQ 73 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445555555555555555555555555555555555555555555555555555444444443
No 381
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=40.38 E-value=1.3e+02 Score=32.23 Aligned_cols=54 Identities=17% Similarity=0.247 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHhHH------HHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 021664 125 SLSDACNSVARQLE------DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (309)
Q Consensus 125 nms~Av~sv~KqLe------qVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v 179 (309)
.+.++|.+....|. .+.+.|-.+.++|.. +...|.++.+..+.....-.+|.++
T Consensus 222 kl~~~~~~a~~~L~ge~~~~~~~~~l~~a~~~l~~-~~~~d~~l~~~~~~l~ea~~~l~ea 281 (557)
T COG0497 222 KLAEAIQNALELLSGEDDTVSALSLLGRALEALED-LSEYDGKLSELAELLEEALYELEEA 281 (557)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH-hhccChhHHHHHHHHHHHHHHHHHH
Confidence 34555666666664 367777777777743 3444445544444444333333333
No 382
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=39.76 E-value=3.5e+02 Score=26.60 Aligned_cols=112 Identities=16% Similarity=0.278 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhcC-CCceEEEeCCCCCCCCchhHHHHHHhhhheeeEEecccCcCcchhhhhhhHHHHHHHHHHhHHH
Q 021664 61 LLAEVSSVQQELSHV-PRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLED 139 (309)
Q Consensus 61 L~aQV~~LaqEl~~L-sr~iTVvn~~ssg~gg~~y~l~a~iGavGYgYmwWKGws~SDlMfVTKRnms~Av~sv~KqLeq 139 (309)
++.|+..|+-|+.+. .+..-|+..+ . -++.++ .|..|. -+..+|+.
T Consensus 57 l~~~~k~L~aE~~qwqk~~peii~~n---~-----~VL~~l---------------------gkeelq----kl~~eLe~ 103 (268)
T PF11802_consen 57 LMMRVKCLTAELEQWQKRTPEIIPLN---P-----EVLLTL---------------------GKEELQ----KLISELEM 103 (268)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCCCC---H-----HHHHHH---------------------HHHHHH----HHHHHHHH
Confidence 888999999999998 6655566654 1 111122 245554 45567888
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 021664 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (309)
Q Consensus 140 Vs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (309)
|-..+.+=.++|..-+++-..=|+|++++-+.......+++.....+.+ +.++..|+.||..++.-
T Consensus 104 vLs~~q~KnekLke~LerEq~wL~Eqqql~~sL~~r~~elk~~~~~~se-----~rv~~el~~K~~~~k~~ 169 (268)
T PF11802_consen 104 VLSTVQSKNEKLKEDLEREQQWLDEQQQLLESLNKRHEELKNQVETFSE-----SRVFQELKTKIEKIKEY 169 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch-----HHHHHHHHHHHHHHHHH
Confidence 8888888888999989999999999999999888888887766555443 35567888888777643
No 383
>PRK04863 mukB cell division protein MukB; Provisional
Probab=39.67 E-value=4.7e+02 Score=31.23 Aligned_cols=15 Identities=13% Similarity=0.200 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHhcC
Q 021664 61 LLAEVSSVQQELSHV 75 (309)
Q Consensus 61 L~aQV~~LaqEl~~L 75 (309)
+...++..++=+..+
T Consensus 235 m~~~l~~~r~t~~~~ 249 (1486)
T PRK04863 235 MEAALRENRMTLEAI 249 (1486)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555544444
No 384
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=39.58 E-value=4.7e+02 Score=32.08 Aligned_cols=79 Identities=23% Similarity=0.334 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHH
Q 021664 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (309)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~K 203 (309)
+++..=+.+|-.+....-.+-+++|+.+.+||+.|.+.+.+.+.= .++++..+|.-......++..-+..|..++..
T Consensus 776 ~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~k---lq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~ 852 (1822)
T KOG4674|consen 776 ESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKK---LQEKSSDLRELTNSLEKQLENAQNLVDELESE 852 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 344444555556666677888999999999999998877665543 33334444433333444444444444444433
Q ss_pred HH
Q 021664 204 LI 205 (309)
Q Consensus 204 i~ 205 (309)
++
T Consensus 853 ~~ 854 (1822)
T KOG4674|consen 853 LK 854 (1822)
T ss_pred HH
Confidence 33
No 385
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=39.54 E-value=4e+02 Score=26.60 Aligned_cols=51 Identities=8% Similarity=0.217 Sum_probs=38.3
Q ss_pred HHHHHHHH---hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHH
Q 021664 146 AAQRQLSS---KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI 196 (309)
Q Consensus 146 ~aKrhLsq---RI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~ 196 (309)
.-||+=.| .||.++.-|++|+.-.+.-+.+.+.+++....+-+..+++...
T Consensus 29 kLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~ 82 (307)
T PF10481_consen 29 KLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKT 82 (307)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 33444444 4899999999999998888888888888777776666665544
No 386
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=39.46 E-value=2.8e+02 Score=29.87 Aligned_cols=79 Identities=16% Similarity=0.302 Sum_probs=55.7
Q ss_pred hheeeEEecccCcCcchhhhhh--hHHHH-------------------HHHHHHhHHHHHHHHH---HHHHHHHHhHhhh
Q 021664 103 VGYGYVWWKGWKLPDMMFATRR--SLSDA-------------------CNSVARQLEDVYSSIS---AAQRQLSSKITSV 158 (309)
Q Consensus 103 vGYgYmwWKGws~SDlMfVTKR--nms~A-------------------v~sv~KqLeqVs~sL~---~aKrhLsqRI~~v 158 (309)
-||.=|-=+|..|+++ =+-+| +|.+. .+.+-..++++|+-+. +||+....+...+
T Consensus 236 ~Gyr~m~~~gY~l~~~-~id~~~~~L~~~l~~~~~~l~~Leld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l 314 (570)
T COG4477 236 AGYRDMKEEGYHLEHV-NIDSRLERLKEQLVENSELLTQLELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPIL 314 (570)
T ss_pred HHHHHHHHccCCcccc-cHHHHHHHHHHHHHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 3788888899999983 22221 22222 2223344566666664 6899999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhc
Q 021664 159 DRDVNKIVEISQATQEEVTILRGR 182 (309)
Q Consensus 159 D~klde~~eis~~i~~eV~~v~~d 182 (309)
-+.|+.+++....+++|+..|+..
T Consensus 315 ~~~l~k~ke~n~~L~~Eie~V~~s 338 (570)
T COG4477 315 PDYLEKAKENNEHLKEEIERVKES 338 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998877654
No 387
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=39.31 E-value=3.4e+02 Score=30.00 Aligned_cols=84 Identities=13% Similarity=0.192 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHH---HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHH
Q 021664 124 RSLSDACNSVARQLEDVYSSISAAQRQL---SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (309)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhL---sqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~L 200 (309)
|.+++-+..+.+.+.....++...|++- .++.+.+--++++....-++|+..+.+.+..++...+-...++.=...|
T Consensus 534 ~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L 613 (698)
T KOG0978|consen 534 RGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERL 613 (698)
T ss_pred HHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777888887777777652 3444445555555555555555555444444443333333333333333
Q ss_pred HHHHHHh
Q 021664 201 ESKLIEI 207 (309)
Q Consensus 201 e~Ki~~i 207 (309)
-.|+.++
T Consensus 614 ~~kle~~ 620 (698)
T KOG0978|consen 614 KRKLERL 620 (698)
T ss_pred HHHHHHh
Confidence 3444443
No 388
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=39.28 E-value=73 Score=31.70 Aligned_cols=75 Identities=11% Similarity=0.174 Sum_probs=48.6
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc------hh-hhhhhHHH
Q 021664 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR------SK-LIGDEFQS 192 (309)
Q Consensus 120 fVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~d------l~-~ig~Dv~~ 192 (309)
|+.+--+.|-|..-++-+..++..+.-=...|..|++.+=..++++....+++.+.|..+++- |. .++.|++.
T Consensus 203 ~~~~~d~~Dg~~~~~~~~~~~~~i~e~e~e~Lke~lqel~~~~e~~~~~~ee~~~~l~~~~~fL~~NkDL~~~l~~e~qk 282 (307)
T PF15112_consen 203 HIPEEDQRDGCESETDVYLSESQILEIEMELLKEKLQELYLQAEEQEVLPEEDSKRLEVLKEFLRNNKDLRSNLQEELQK 282 (307)
T ss_pred cCchhhccchhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHhcHHHHHHHHHHHHH
Confidence 444455555666666666666666666666777777877777777777777777777766653 33 56666644
Q ss_pred HH
Q 021664 193 VR 194 (309)
Q Consensus 193 v~ 194 (309)
++
T Consensus 283 L~ 284 (307)
T PF15112_consen 283 LD 284 (307)
T ss_pred HH
Confidence 44
No 389
>PRK04654 sec-independent translocase; Provisional
Probab=39.20 E-value=2.7e+02 Score=26.54 Aligned_cols=33 Identities=9% Similarity=0.130 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHh
Q 021664 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKIT 156 (309)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~ 156 (309)
+.|=.+...+++-+.++-.....+|+++.+-++
T Consensus 23 erLPe~aRtlGk~irk~R~~~~~vk~El~~El~ 55 (214)
T PRK04654 23 ERLPKAARFAGLWVRRARMQWDSVKQELERELE 55 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456777788888888877777777777776553
No 390
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=39.15 E-value=1.9e+02 Score=28.73 Aligned_cols=47 Identities=32% Similarity=0.404 Sum_probs=30.4
Q ss_pred hhhhhhHHH----HHHHHHHhHHHHHH----HHHHHHHHHHHhHhhhhhhHHHHH
Q 021664 120 FATRRSLSD----ACNSVARQLEDVYS----SISAAQRQLSSKITSVDRDVNKIV 166 (309)
Q Consensus 120 fVTKRnms~----Av~sv~KqLeqVs~----sL~~aKrhLsqRI~~vD~klde~~ 166 (309)
||-|.+.+= |+..+++=|++|-+ .|...|+.|..||+-|.--+|=++
T Consensus 15 fAIRSGIslaS~yAikq~s~~l~~ip~~~~~~l~~lq~~L~~kI~IvspAIDLIe 69 (302)
T PF05508_consen 15 FAIRSGISLASSYAIKQCSRFLKKIPDKDRKELEKLQRRLESKIKIVSPAIDLIE 69 (302)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhccccHHHHHH
Confidence 566666653 45666666666544 577777888888877776555443
No 391
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=39.13 E-value=90 Score=23.57 Aligned_cols=33 Identities=9% Similarity=0.274 Sum_probs=20.2
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHH
Q 021664 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVE 167 (309)
Q Consensus 135 KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~e 167 (309)
+=|+|+++.....-..+..|||.+..++|+...
T Consensus 10 ~lL~qmq~kFq~mS~~I~~riDeM~~RIDdLE~ 42 (54)
T PF06825_consen 10 NLLQQMQDKFQTMSDQILGRIDEMSSRIDDLEK 42 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 335555566666666677777777776665443
No 392
>PF01996 F420_ligase: F420-0:Gamma-glutamyl ligase; InterPro: IPR002847 This entry contains F420-0:gamma-glutamyl ligase and related proteins. F420-0:gamma-glutamyl ligase catalyzes the GTP-dependent successive addition of multiple gamma-linked L-glutamates to the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) to form polyglutamated F420 derivatives [, , , ].; PDB: 2G9I_A 2PHN_A.
Probab=39.07 E-value=5.3 Score=37.17 Aligned_cols=73 Identities=21% Similarity=0.212 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhcC-CCceEEEeCCCCCCCCchhHH-HHHHhhhheeeEE-eccc--CcCcchhhhhhhHHHHHHHHHH
Q 021664 62 LAEVSSVQQELSHV-PRSVIIETSSGSGTGAKKYGV-IVVIVAVGYGYVW-WKGW--KLPDMMFATRRSLSDACNSVAR 135 (309)
Q Consensus 62 ~aQV~~LaqEl~~L-sr~iTVvn~~ssg~gg~~y~l-~a~iGavGYgYmw-WKGw--s~SDlMfVTKRnms~Av~sv~K 135 (309)
.+=.++|+++|++. ...+.|+=.++.|+. .-.+. -+++|+.|.-|++ |+|- -|..-|-+|.+..+|-.++.+.
T Consensus 133 d~sA~~i~~~l~~~~g~~v~ViI~Dt~gr~-~r~G~~~vaig~~Gi~~~~d~~G~~d~~g~~L~~T~~~~aD~la~aa~ 210 (228)
T PF01996_consen 133 DASARRIREELKERTGKDVGVIITDTNGRP-WRLGQTGVAIGVAGIKPLRDYRGEKDLFGRELKVTPRAVADELASAAD 210 (228)
T ss_dssp HHHHHHHHHHHHHHHS---EEEEEEEEEET-TEECEEEEEEEEESB-SEEE-TT-B-TTS-B-S--EEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCceEEEEECCCCcE-EecCCccchhhccCCccccccCCCchhhhChhccCchhhhhHHHHHhh
Confidence 34578899999988 777776666533432 22333 4688899998988 7776 3666688999999998887664
No 393
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=39.02 E-value=3.1e+02 Score=29.03 Aligned_cols=76 Identities=13% Similarity=0.265 Sum_probs=44.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021664 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (309)
Q Consensus 130 v~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (309)
.+.-.+-++.+..++.....++.-|++++...+.+..|+.+.++++-..-++.++.+. +.....+...|.||..++
T Consensus 366 l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~---e~~~~~~~s~d~~I~dLq 441 (493)
T KOG0804|consen 366 LKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELE---EREKEALGSKDEKITDLQ 441 (493)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3344455566666666667777777777777777777777777666655555554443 233334444455554444
No 394
>PHA03395 p10 fibrous body protein; Provisional
Probab=38.93 E-value=1.2e+02 Score=25.14 Aligned_cols=49 Identities=8% Similarity=0.252 Sum_probs=22.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 021664 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (309)
Q Consensus 127 s~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV 176 (309)
.+|++.+..+++-++.++...+..| .-++.+..|||.|.+.-..+.+.|
T Consensus 10 r~dIkavd~KVdalQ~~V~~l~~nl-pdv~~l~~kLdaq~~~Ltti~tkv 58 (87)
T PHA03395 10 RQDIKAVSDKVDALQAAVDDVRANL-PDVTEINEKLDAQSASLDTISSAV 58 (87)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcC-CcHHHHHHHHHhHHHHHHHHHHHH
Confidence 3556666666666665555554332 112333334444444333333333
No 395
>KOG4559 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.84 E-value=1.1e+02 Score=26.46 Aligned_cols=49 Identities=12% Similarity=0.254 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 021664 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQ 173 (309)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~ 173 (309)
-|.+|.+.==|-+.||-|.|+.--.+|+++.++|.--|.+..+|...++
T Consensus 58 eMNkaTaakY~DMk~iAEkla~k~deLn~KfenL~P~lqQIDaiddst~ 106 (120)
T KOG4559|consen 58 EMNKATAAKYKDMKQIAEKLAGKLDELNLKFENLAPMLQQIDAIDDSTD 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4677777777778888888887778888888888777777766666554
No 396
>KOG0630 consensus Predicted pyridoxal-dependent decarboxylase [Amino acid transport and metabolism]
Probab=38.82 E-value=1.7e+02 Score=31.80 Aligned_cols=37 Identities=19% Similarity=0.341 Sum_probs=23.8
Q ss_pred CcccccccCCCCCC---CCCCCCCCCC-CCCCCCCCCCCCC
Q 021664 243 TLSRTTLELPGITP---SSRSGSLHPL-PLEPPSPSXXXXX 279 (309)
Q Consensus 243 ~s~~~ale~~~~~p---~sr~~slpp~-~~e~~sps~~~~~ 279 (309)
+.++|+=|.||+.- ...+..+||. |..-|.|.+.+||
T Consensus 787 a~pi~aNesP~iPhepfatkadaeP~s~ptsE~a~~eea~S 827 (838)
T KOG0630|consen 787 AHPIPANESPPIPHEPFATKADAEPPSEPTSEPAPGEEAGS 827 (838)
T ss_pred CCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCcC
Confidence 46889999888631 2556667777 6555566665554
No 397
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.81 E-value=1e+02 Score=30.34 Aligned_cols=52 Identities=17% Similarity=0.239 Sum_probs=30.6
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHH-HHHHHHHHHH
Q 021664 154 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI-VQTLESKLIE 206 (309)
Q Consensus 154 RI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~-V~~Le~Ki~~ 206 (309)
||.+|..-|.+-....-.-..++++++.| .+-..+++..|.+ |..|-.|+.+
T Consensus 233 eia~Lkk~L~qkdq~ileKdkqisnLKad-~e~~~~~ek~Hke~v~qL~~k~~~ 285 (305)
T KOG3990|consen 233 EIARLKKLLHQKDQLILEKDKQISNLKAD-KEYQKELEKKHKERVQQLQKKKEE 285 (305)
T ss_pred HHHHHHHHHhhhHHHHHhhhhhhhccCcc-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333445567777777 5555778888877 7777776654
No 398
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=38.76 E-value=1.5e+02 Score=21.33 Aligned_cols=29 Identities=14% Similarity=0.377 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHH
Q 021664 137 LEDVYSSISAAQRQLSSKITSVDRDVNKI 165 (309)
Q Consensus 137 LeqVs~sL~~aKrhLsqRI~~vD~klde~ 165 (309)
|+++...+....++|...++.+...++.+
T Consensus 9 l~~~a~~~~~~~~~l~~~~~~l~~~~~~l 37 (86)
T PF06013_consen 9 LRAAAQQLQAQADELQSQLQQLESSIDSL 37 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333
No 399
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=38.67 E-value=3.9e+02 Score=26.18 Aligned_cols=8 Identities=38% Similarity=0.617 Sum_probs=3.9
Q ss_pred hhhHHHHH
Q 021664 123 RRSLSDAC 130 (309)
Q Consensus 123 KRnms~Av 130 (309)
|+-+.||.
T Consensus 109 rkEl~nAl 116 (290)
T COG4026 109 RKELKNAL 116 (290)
T ss_pred HHHHHHHH
Confidence 44555553
No 400
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=38.37 E-value=2.7e+02 Score=28.83 Aligned_cols=57 Identities=14% Similarity=0.283 Sum_probs=35.7
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHH
Q 021664 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT 177 (309)
Q Consensus 121 VTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~ 177 (309)
+.|..+-.+-..++.++.++++.|...++.+...|+.--+++++..+-...+.+++.
T Consensus 139 ~~r~~vl~~a~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~ 195 (507)
T PRK07739 139 GARSVVRQRAQALAETFNYLSQSLTDIQNDLKSEIDVTVKEINSLASQISDLNKQIA 195 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777777777777777777777766665544444444444444444443
No 401
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=38.32 E-value=2.7e+02 Score=30.23 Aligned_cols=59 Identities=12% Similarity=0.301 Sum_probs=43.5
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 021664 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (309)
Q Consensus 121 VTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v 179 (309)
+.|..+-..-+.+..++.++++.|...++.+.++|+..-.++++..+-...+.+++..+
T Consensus 127 aaRq~vl~~A~~La~~fn~~~~~L~~l~~~vn~qI~~~V~~IN~l~~qIA~LN~qI~~~ 185 (676)
T PRK05683 127 AARQLLLTQAQGLSKRFNSLSSQLNQQNSNINSQLSAMTDQVNNLTTSIASYNKQIAQA 185 (676)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777777888888888888888888888888887776666666666666666666544
No 402
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=38.32 E-value=3.3e+02 Score=25.22 Aligned_cols=35 Identities=14% Similarity=0.273 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhh
Q 021664 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSV 158 (309)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~v 158 (309)
.+++.++..+..-++.+.+.++.-|..+...|++.
T Consensus 88 ~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~ 122 (247)
T PF06705_consen 88 EQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEEL 122 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 45666666666666666666666666666666554
No 403
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=38.18 E-value=2.5e+02 Score=29.99 Aligned_cols=59 Identities=17% Similarity=0.287 Sum_probs=44.2
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 021664 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (309)
Q Consensus 121 VTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v 179 (309)
+.|..+-..-.+++.++.++++.|...++.+..+|+.--+++++..+-...+.+++..+
T Consensus 139 a~R~~vl~~A~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~qIa~LN~qI~~~ 197 (627)
T PRK06665 139 AERQVVLERAQSLGERIHDRYRSLERIRDMANDEIEITVEEINNILRNIADLNEQIVKS 197 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45888888889999999999999999999888888666655555555555555555444
No 404
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=37.97 E-value=3.1e+02 Score=32.20 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=10.3
Q ss_pred CcCcchhhhhhhHHHHHHHH
Q 021664 114 KLPDMMFATRRSLSDACNSV 133 (309)
Q Consensus 114 s~SDlMfVTKRnms~Av~sv 133 (309)
+.+|+-+....+.+-||..+
T Consensus 893 ~~p~f~~~~v~~~s~a~~~l 912 (1395)
T KOG3595|consen 893 QNPDFVPEKVNRASLACEGL 912 (1395)
T ss_pred CCccCCHHHHHhhhhhhhhH
Confidence 34555555555555555544
No 405
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=37.87 E-value=3.4e+02 Score=31.10 Aligned_cols=84 Identities=19% Similarity=0.337 Sum_probs=40.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH--------HHHhhhc---hhhhhhhHHHHHH
Q 021664 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE--------VTILRGR---SKLIGDEFQSVRD 195 (309)
Q Consensus 127 s~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~e--------V~~v~~d---l~~ig~Dv~~v~~ 195 (309)
....+.+..++++..+.....++++..+++.++..+..++.-.+.+.++ +.++..+ +..+..+++.++.
T Consensus 287 ~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~ 366 (1201)
T PF12128_consen 287 KEELNELNEELEKLEDEIKELRDELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQE 366 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344444444445555555555555555555555554444333333322 2222222 2344455555555
Q ss_pred HHHHHHHHHHHhhhh
Q 021664 196 IVQTLESKLIEIEGK 210 (309)
Q Consensus 196 ~V~~Le~Ki~~ie~k 210 (309)
....|.+|...|+.+
T Consensus 367 ~~~~Lt~~~~di~~k 381 (1201)
T PF12128_consen 367 QLDLLTSKHQDIESK 381 (1201)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666666666544
No 406
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=37.85 E-value=1e+02 Score=28.51 Aligned_cols=27 Identities=15% Similarity=0.305 Sum_probs=15.5
Q ss_pred HHHHHHHhhhchhhhhhhHHHHHHHHH
Q 021664 172 TQEEVTILRGRSKLIGDEFQSVRDIVQ 198 (309)
Q Consensus 172 i~~eV~~v~~dl~~ig~Dv~~v~~~V~ 198 (309)
+++++++++.+++++...++.+.+.|.
T Consensus 167 ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 167 IERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445555666666666666666655543
No 407
>PRK09343 prefoldin subunit beta; Provisional
Probab=37.82 E-value=83 Score=26.55 Aligned_cols=47 Identities=9% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh
Q 021664 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI 186 (309)
Q Consensus 140 Vs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~i 186 (309)
|-.....++..|..|++-.+.+++....-.+.+++.+.+++..+..+
T Consensus 65 v~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 65 VKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 408
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=37.77 E-value=1.9e+02 Score=22.40 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhh
Q 021664 136 QLEDVYSSISAAQRQLSSKITSVD 159 (309)
Q Consensus 136 qLeqVs~sL~~aKrhLsqRI~~vD 159 (309)
.++++.+.+..+|.-+...|+.+=
T Consensus 4 kl~~i~~~v~~v~~im~~Ni~~ll 27 (89)
T PF00957_consen 4 KLEQIQEQVEEVKNIMRENIDKLL 27 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666665553
No 409
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=37.63 E-value=2e+02 Score=22.59 Aligned_cols=56 Identities=16% Similarity=0.277 Sum_probs=0.0
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhc-------hhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 021664 155 ITSVDRDVNKIVEISQATQEEVTILRGR-------SKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (309)
Q Consensus 155 I~~vD~klde~~eis~~i~~eV~~v~~d-------l~~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (309)
++.|..|++...+.....+.||.+++.. -.....+.+.+++=-..+..+|+.+=+|
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 410
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=37.60 E-value=96 Score=25.78 Aligned_cols=14 Identities=21% Similarity=0.558 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHh
Q 021664 194 RDIVQTLESKLIEI 207 (309)
Q Consensus 194 ~~~V~~Le~Ki~~i 207 (309)
+.....+-.+|..|
T Consensus 54 ~~~~~~ik~~lk~l 67 (151)
T cd00179 54 KKLAKEIKGKLKEL 67 (151)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333344444444
No 411
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=37.37 E-value=96 Score=31.35 Aligned_cols=14 Identities=7% Similarity=0.169 Sum_probs=8.0
Q ss_pred hhhHHHHHHHhhhc
Q 021664 34 VGGTLKIVSKLIKQ 47 (309)
Q Consensus 34 lsg~lk~l~k~lk~ 47 (309)
|-+.|..+..++++
T Consensus 232 L~~~ltrL~~~~~~ 245 (370)
T PLN03094 232 LVGICTRLAREMEA 245 (370)
T ss_pred HHHHHHHHHHHhhh
Confidence 33666666666554
No 412
>COG3910 Predicted ATPase [General function prediction only]
Probab=37.34 E-value=43 Score=31.99 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcC--CCceEEEeCCCCCCCCchhHHHHHHhhhheeeEEecccC
Q 021664 64 EVSSVQQELSHV--PRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWK 114 (309)
Q Consensus 64 QV~~LaqEl~~L--sr~iTVvn~~ssg~gg~~y~l~a~iGavGYgYmwWKGws 114 (309)
-++.|+. .| .-|||++.|. .|+ .+.+++=+| |+||+|=---|-+
T Consensus 25 a~r~l~~---~LeF~apIT~i~GE-NGs--GKSTLLEai-A~~~~~n~aGg~~ 70 (233)
T COG3910 25 AFRHLEE---RLEFRAPITFITGE-NGS--GKSTLLEAI-AAGMGFNAAGGGK 70 (233)
T ss_pred HHHhhhh---hccccCceEEEEcC-CCc--cHHHHHHHH-HhhccccccCCCc
Confidence 4777776 45 7799999997 333 356665444 6677776655544
No 413
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=37.21 E-value=5.7e+02 Score=27.67 Aligned_cols=23 Identities=9% Similarity=0.336 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHH
Q 021664 144 ISAAQRQLSSKITSVDRDVNKIV 166 (309)
Q Consensus 144 L~~aKrhLsqRI~~vD~klde~~ 166 (309)
|..=|+|...||..|..+|-+.+
T Consensus 41 L~eEk~~~~~~V~eLE~sL~eLk 63 (617)
T PF15070_consen 41 LKEEKEHDISRVQELERSLSELK 63 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666667777776665543
No 414
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.02 E-value=3.7e+02 Score=29.96 Aligned_cols=79 Identities=19% Similarity=0.273 Sum_probs=46.5
Q ss_pred cCcCcchhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHH---------HHHHHHHHHhhhch
Q 021664 113 WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEIS---------QATQEEVTILRGRS 183 (309)
Q Consensus 113 ws~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis---------~~i~~eV~~v~~dl 183 (309)
-.|||=||-| -+-+-+.++.|++.+...|+..+++|-+.. +++..+--...+ ...+.+|.++++.+
T Consensus 56 ~~fSv~~~tS---as~~s~~ia~q~~~L~q~lr~ldrqLh~qv--~~Rh~allaQat~~~~~d~~l~sl~~~v~~lqs~i 130 (797)
T KOG2211|consen 56 TLFSVQMMTS---ASKESNRIATQCDDLTQKLRELDRQLHAQV--LKRHMALLAQATEELFEDLELRSLLVKVAELQSEI 130 (797)
T ss_pred chhhhhhHHH---HHHhcCCHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3467766533 233455678888888888888888875533 233222222111 23555677777777
Q ss_pred hhhhhhHHHHHHH
Q 021664 184 KLIGDEFQSVRDI 196 (309)
Q Consensus 184 ~~ig~Dv~~v~~~ 196 (309)
.+|..|+..-.+.
T Consensus 131 ~riknd~~epyk~ 143 (797)
T KOG2211|consen 131 KRIKNDNKEPYKI 143 (797)
T ss_pred HHHHHhhhhHHHH
Confidence 7777777655443
No 415
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=36.92 E-value=1.1e+02 Score=22.67 Aligned_cols=31 Identities=19% Similarity=0.426 Sum_probs=16.0
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 021664 149 RQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (309)
Q Consensus 149 rhLsqRI~~vD~klde~~eis~~i~~eV~~v 179 (309)
.++.+.|+.+..++++..+-.+..+.++..+
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555555555444
No 416
>PRK11677 hypothetical protein; Provisional
Probab=36.80 E-value=2.2e+02 Score=24.96 Aligned_cols=41 Identities=5% Similarity=0.087 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHH
Q 021664 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI 178 (309)
Q Consensus 138 eqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~ 178 (309)
.++...|..+|.+|.+-=+.|.+..++..++-..+.++=.+
T Consensus 32 ~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~~ 72 (134)
T PRK11677 32 QALQYELEKNKAELEEYRQELVSHFARSAELLDTMAKDYRQ 72 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666666666777777888877777666533
No 417
>PLN02320 seryl-tRNA synthetase
Probab=36.80 E-value=1.3e+02 Score=31.81 Aligned_cols=30 Identities=13% Similarity=0.060 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHhHHHHHH
Q 021664 192 SVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (309)
Q Consensus 192 ~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (309)
.+..-+..|-.+|..+|........-+..+
T Consensus 134 ~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 163 (502)
T PLN02320 134 ALVEEGKNLKEGLVTLEEDLVKLTDELQLE 163 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444443333333
No 418
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=36.79 E-value=2.1e+02 Score=25.55 Aligned_cols=53 Identities=15% Similarity=0.336 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHH
Q 021664 142 SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (309)
Q Consensus 142 ~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~ 194 (309)
..+.+...+|..||..++..+.+.....+.++||...++--+.....-+..++
T Consensus 119 ~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 119 AELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556667777777777777777777777777666665555544444443
No 419
>PF14182 YgaB: YgaB-like protein
Probab=36.64 E-value=2.4e+02 Score=23.10 Aligned_cols=47 Identities=13% Similarity=0.316 Sum_probs=32.0
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHH-----HHHHhhhchhhhhhhHHHHHHHHH
Q 021664 152 SSKITSVDRDVNKIVEISQATQE-----EVTILRGRSKLIGDEFQSVRDIVQ 198 (309)
Q Consensus 152 sqRI~~vD~klde~~eis~~i~~-----eV~~v~~dl~~ig~Dv~~v~~~V~ 198 (309)
.-++=.|-..||-|.+|-++.++ +...++..+.+...+++.||.+..
T Consensus 13 MD~LL~LQsElERCqeIE~eL~~l~~ea~l~~i~~EI~~mkk~Lk~Iq~~Fe 64 (79)
T PF14182_consen 13 MDKLLFLQSELERCQEIEKELKELEREAELHSIQEEISQMKKELKEIQRVFE 64 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677788888888777654 356667777777777777776654
No 420
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=36.60 E-value=1.1e+02 Score=27.39 Aligned_cols=51 Identities=18% Similarity=0.320 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHH
Q 021664 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT 177 (309)
Q Consensus 126 ms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~ 177 (309)
+.++|..+-..+. +.+......++|.+|++.+..+|+.+.++-..|.++..
T Consensus 38 v~~~v~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~el~~le~~k~~id~~A~ 88 (180)
T PF04678_consen 38 VKEAVHRLLPLLN-VEEYQNSRERQLRKRLEELRQELAPLEKIKQEIDEKAE 88 (180)
T ss_pred HHHHHHHHhcccc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554443322 34444566677888888888888888887777777663
No 421
>PLN02678 seryl-tRNA synthetase
Probab=36.55 E-value=3.4e+02 Score=28.08 Aligned_cols=87 Identities=10% Similarity=0.097 Sum_probs=49.9
Q ss_pred HhHHHHHHHHHHHHHHH----HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh---hhhhhHHHHHHHHHHHHHHHHHh
Q 021664 135 RQLEDVYSSISAAQRQL----SSKITSVDRDVNKIVEISQATQEEVTILRGRSK---LIGDEFQSVRDIVQTLESKLIEI 207 (309)
Q Consensus 135 KqLeqVs~sL~~aKrhL----sqRI~~vD~klde~~eis~~i~~eV~~v~~dl~---~ig~Dv~~v~~~V~~Le~Ki~~i 207 (309)
++.|.|-++|. ||.+ -.+|-.+|.+.-+...-.+..+.+-+.+...+. .-+.|.+.+..-+..|..+|..+
T Consensus 13 ~~~~~v~~~l~--~R~~~~~~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~l 90 (448)
T PLN02678 13 GDPELIRESQR--RRFASVELVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEK 90 (448)
T ss_pred cCHHHHHHHHH--hhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHH
Confidence 35555655554 2221 234444444433333333334433333333332 33466777777788888999999
Q ss_pred hhhhhhHhHHHHHHHH
Q 021664 208 EGKQDITTLGVKKLCD 223 (309)
Q Consensus 208 e~kQd~Tn~GV~~LC~ 223 (309)
|...+....-+..++.
T Consensus 91 e~~~~~~~~~l~~~~~ 106 (448)
T PLN02678 91 EAEVQEAKAALDAKLK 106 (448)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9888888888877654
No 422
>COG1392 Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]
Probab=36.55 E-value=3.6e+02 Score=25.16 Aligned_cols=97 Identities=14% Similarity=0.258 Sum_probs=46.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhH----hhhhhhHHHHHH----HHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHH
Q 021664 133 VARQLEDVYSSISAAQRQLSSKI----TSVDRDVNKIVE----ISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (309)
Q Consensus 133 v~KqLeqVs~sL~~aKrhLsqRI----~~vD~klde~~e----is~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki 204 (309)
+.+++|.+-+.+..+=.-|..|= +.+++-+.+..+ ...++.+-|..+...++. ...+..+..-|..+|...
T Consensus 85 L~~~~D~i~D~~ed~A~~l~l~~~~ip~~~~e~~~~~~~~~~~a~~~~~~ai~~L~~~~e~-~~~~~~i~~eI~~~E~e~ 163 (217)
T COG1392 85 LIESQDDIADAAEDAAKLLLLRKPFIPEELDEEFLRLVDLSLKAAELLAEAIELLEDLLES-ADRLLEIIKEIEALEHEC 163 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHh
Confidence 33445555555555544444443 244443333332 223333333333333333 223344444466677777
Q ss_pred HHhhhh-------hhhH--hHHHHHHHHHHHhhcc
Q 021664 205 IEIEGK-------QDIT--TLGVKKLCDRARELEN 230 (309)
Q Consensus 205 ~~ie~k-------Qd~T--n~GV~~LC~f~~~~~~ 230 (309)
|.|+.+ -+.. -..+.++|++++.+++
T Consensus 164 D~i~~~l~k~Lf~~e~~~~~~~~~~~~~i~~~i~~ 198 (217)
T COG1392 164 DDIQRELLKKLFSLETEINPIDVIILKEIIEKIED 198 (217)
T ss_pred hHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 766643 1222 2677888888876543
No 423
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=36.49 E-value=2.3e+02 Score=26.25 Aligned_cols=74 Identities=18% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhch------hhhhhhHHHHHHHHHHH
Q 021664 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRS------KLIGDEFQSVRDIVQTL 200 (309)
Q Consensus 127 s~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl------~~ig~Dv~~v~~~V~~L 200 (309)
++.=..+-..|.+-+.+|...-+.++ ||.||+=+|+..|.....++-=..+...+ +.+-.+++.+.+ +.|
T Consensus 103 a~~~~ev~~aLk~g~~aLK~~~k~~~--idkVd~lmDei~E~~e~~~EIseaLs~~~~~~~DEdELe~ELe~Le~--e~l 178 (191)
T PTZ00446 103 MHLHKIAVNALSYAANTHKKLNNEIN--TQKVEKIIDTIQENKDIQEEINQALSFNLLNNVDDDEIDKELDLLKE--QTM 178 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH--HHH
Q ss_pred HHHH
Q 021664 201 ESKL 204 (309)
Q Consensus 201 e~Ki 204 (309)
|.++
T Consensus 179 ~~~l 182 (191)
T PTZ00446 179 EEKL 182 (191)
T ss_pred HHHH
No 424
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=36.38 E-value=2.1e+02 Score=35.37 Aligned_cols=72 Identities=21% Similarity=0.250 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHH-----------------HHHHHHHHHHHHHHHhhhchhhhhhh---HHHHHHHHHHH
Q 021664 141 YSSISAAQRQLSSKITSVDRDVN-----------------KIVEISQATQEEVTILRGRSKLIGDE---FQSVRDIVQTL 200 (309)
Q Consensus 141 s~sL~~aKrhLsqRI~~vD~kld-----------------e~~eis~~i~~eV~~v~~dl~~ig~D---v~~v~~~V~~L 200 (309)
|+.|.....||.+|=+++....+ +|.|....|++. +.+.+++..++.| |..++....+|
T Consensus 918 sd~I~~~Q~~Ln~rW~~l~~l~~qk~~~L~~a~~V~~f~~eC~et~~wi~dK-~~~~e~t~~~~~Dl~gv~alqrrL~~l 996 (2473)
T KOG0517|consen 918 SDEILARQDKLNQRWQQLRELVDQKKVALESALRVETFHLECEETRVWIRDK-TRVLESTDRLGNDLAGVMALQRRLQGL 996 (2473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHhccccCcchHHHHHHHHHHhhh
Confidence 45678889999999887765444 466666777654 4455667777877 45566667777
Q ss_pred HHHHHHhhhhhhh
Q 021664 201 ESKLIEIEGKQDI 213 (309)
Q Consensus 201 e~Ki~~ie~kQd~ 213 (309)
|.++.-||.|++.
T Consensus 997 Erdl~aie~kv~~ 1009 (2473)
T KOG0517|consen 997 ERDLAAIEAKVAA 1009 (2473)
T ss_pred hhHHHHHHHHHHH
Confidence 8777777777543
No 425
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=36.18 E-value=1.4e+02 Score=25.70 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHH---HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHH
Q 021664 124 RSLSDACNSVARQLEDVYSSISAAQR---QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQS 192 (309)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKr---hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~ 192 (309)
..+.+-++.+.++-.+.+..|..+|+ +|+.|+=+|-.+++-..----.+..|-.+++..++.+..++..
T Consensus 54 ~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~~~l~~ 125 (141)
T PF13874_consen 54 KEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEALEAQLNA 125 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHcC
No 426
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=36.14 E-value=4.7e+02 Score=28.74 Aligned_cols=71 Identities=14% Similarity=0.196 Sum_probs=39.7
Q ss_pred HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHH--HHHHHhhhhhhhHhHHHHHHHHHHH
Q 021664 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE--SKLIEIEGKQDITTLGVKKLCDRAR 226 (309)
Q Consensus 153 qRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le--~Ki~~ie~kQd~Tn~GV~~LC~f~~ 226 (309)
.-++++.+.+.+|- ..+.+-+++++.-......=.+.=+.+|+-+. .++..+-.+-..|+.-...||.|++
T Consensus 36 ~h~~~~~~e~~~~l---n~~~n~~~~i~~~~~e~~~l~e~~r~~V~~~~~~fr~~k~Y~sv~~t~~~~s~l~n~V~ 108 (742)
T COG5173 36 HHDGNLSAEISKCL---NNILNISKRIYGLEEELKSLVEGKRRNVRVLKGFFRLVKDYRSVKMTCLAHSNLCNVVE 108 (742)
T ss_pred hhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433 33333344444333333333344445555444 3566777788899999999999887
No 427
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=36.11 E-value=3.1e+02 Score=27.88 Aligned_cols=56 Identities=11% Similarity=0.275 Sum_probs=32.6
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 021664 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (309)
Q Consensus 121 VTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV 176 (309)
+.|..+-.+-..+++++.+++..|...++.+.+.|+.--++++...+-...+.+++
T Consensus 127 ~~r~~vl~~a~~la~~~n~~~~~l~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I 182 (456)
T PRK07191 127 PMRQQVIESANAMALRFNNVNNFIVQQKKSIGQQRDATVKQINSLTRSIADYNQKI 182 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667777777777777777777777666665444333333333333333343
No 428
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=35.89 E-value=45 Score=22.82 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=20.5
Q ss_pred eeEEecccCcCcchhhhhhhHHH
Q 021664 106 GYVWWKGWKLPDMMFATRRSLSD 128 (309)
Q Consensus 106 gYmwWKGws~SDlMfVTKRnms~ 128 (309)
-|+.|+|++-++--+++..++.+
T Consensus 20 ylVkW~g~~~~~~tW~~~~~l~~ 42 (55)
T smart00298 20 YLVKWKGYSYSEDTWEPEENLLN 42 (55)
T ss_pred EEEEECCCCCccCceeeHHHHHH
Confidence 46899999999999999998886
No 429
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=35.86 E-value=2.1e+02 Score=22.33 Aligned_cols=53 Identities=17% Similarity=0.243 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhh
Q 021664 160 RDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (309)
Q Consensus 160 ~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (309)
.+|.+-.+.+.+..+|-..+...--....-|..++.-+..+|..+..+..+.+
T Consensus 5 ~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~ 57 (74)
T PF12329_consen 5 KKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLE 57 (74)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333334444444444444444444433333
No 430
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=35.50 E-value=3.8e+02 Score=25.11 Aligned_cols=109 Identities=11% Similarity=0.206 Sum_probs=69.4
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHH-HHHHHHHHHhhhchhhhhhhHHH----H
Q 021664 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEIS-QATQEEVTILRGRSKLIGDEFQS----V 193 (309)
Q Consensus 119 MfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis-~~i~~eV~~v~~dl~~ig~Dv~~----v 193 (309)
++-.++.+.+.+..+-|.+-.-+..+..+|+.+-+|-...+....+...-. ..+.+++..++.+++.-.+++.. .
T Consensus 98 ~~k~~k~~e~~~~k~~K~~~~~~~~~~kaKk~y~~~cke~e~~~~~~~~~k~~~s~~~~~K~~~K~~Ka~~e~~~~ve~y 177 (233)
T cd07649 98 FKKDMKKLDHHIADLRKQLASRYAAVEKARKALLERQKDLEGKTQQLEIKLSNKTEEDIKKARRKSTQAGDDLMRCVDLY 177 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667888999999999999999999999999999999988887655432211 11334455555554444333322 2
Q ss_pred HHHHHHHHHHHHHhhhh-hhhHhHHHHHHHHHHHh
Q 021664 194 RDIVQTLESKLIEIEGK-QDITTLGVKKLCDRARE 227 (309)
Q Consensus 194 ~~~V~~Le~Ki~~ie~k-Qd~Tn~GV~~LC~f~~~ 227 (309)
..+-..++.++..+-.. |.+-..-|..|.+++.+
T Consensus 178 ~~~r~~we~~m~~~~~~~Q~~Ee~Rl~~lk~~L~~ 212 (233)
T cd07649 178 NQAQSKWFEEMVTTSLELERLEVERIEMIRQHLCQ 212 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334555555554433 66666666666665543
No 431
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=35.47 E-value=2.4e+02 Score=22.92 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=14.5
Q ss_pred HHHHhhhchhhhhhhHHHHHHHHHHH
Q 021664 175 EVTILRGRSKLIGDEFQSVRDIVQTL 200 (309)
Q Consensus 175 eV~~v~~dl~~ig~Dv~~v~~~V~~L 200 (309)
++.+.+.+.++...|++....-+..+
T Consensus 95 ~~~~~~k~~~~~~~~yd~~~~k~~~~ 120 (194)
T cd07307 95 EIKKRRKKLDKARLDYDAAREKLKKL 120 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555556666665555554
No 432
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=35.38 E-value=3.3e+02 Score=30.33 Aligned_cols=91 Identities=15% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH-HHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHh
Q 021664 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE-VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITT 215 (309)
Q Consensus 137 LeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~e-V~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn 215 (309)
|.+--++....|-.+-.|+.++|.-|.+|+.--...|+| --.+++-+..+-.+.++++ ..||.||.++...-..+.
T Consensus 29 lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~---~~le~~l~e~~~~l~~~~ 105 (769)
T PF05911_consen 29 LKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIK---SELEAKLAELSKRLAESA 105 (769)
T ss_pred HHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhcc
Q 021664 216 LGVKKLCDRARELEN 230 (309)
Q Consensus 216 ~GV~~LC~f~~~~~~ 230 (309)
.--..|+..+...++
T Consensus 106 ~e~~~l~~~l~~~~~ 120 (769)
T PF05911_consen 106 AENSALSKALQEKEK 120 (769)
T ss_pred hhhHHHHHHHHHHHH
No 433
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=35.27 E-value=2.9e+02 Score=23.70 Aligned_cols=95 Identities=15% Similarity=0.222 Sum_probs=59.0
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHH-HHHHHHHhhhchhhhhhhHHHHHHHH
Q 021664 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQA-TQEEVTILRGRSKLIGDEFQSVRDIV 197 (309)
Q Consensus 119 MfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~-i~~eV~~v~~dl~~ig~Dv~~v~~~V 197 (309)
+.-.++.|+++...+|..+..++..=.....+|+.-+.++..-.+.+.+.... ...+...+-+.|...-..+.+++.++
T Consensus 30 ~~k~~~~l~~~~~elg~~~~~Ls~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~y~~~~~s~k~~l 109 (218)
T cd07596 30 LVKRRRELGSALGEFGKALIKLAKCEEEVGGELGEALSKLGKAAEELSSLSEAQANQELVKLLEPLKEYLRYCQAVKETL 109 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33456677777777777777776643222236777777777777776655443 44455567777777777777777776
Q ss_pred HHHHHHHHHhhhhhhh
Q 021664 198 QTLESKLIEIEGKQDI 213 (309)
Q Consensus 198 ~~Le~Ki~~ie~kQd~ 213 (309)
..=+.++...+.-++.
T Consensus 110 ~~R~~~~~~~~~~~~~ 125 (218)
T cd07596 110 DDRADALLTLQSLKKD 125 (218)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6655555444443333
No 434
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.22 E-value=1.4e+02 Score=26.11 Aligned_cols=59 Identities=20% Similarity=0.249 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHH
Q 021664 163 NKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (309)
Q Consensus 163 de~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (309)
.|..|..+..++.|+.+++-.=.||.|++.=+++..++++-.++....=--|-.-+.-+
T Consensus 32 ~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ 90 (118)
T KOG3385|consen 32 RENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTM 90 (118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 67788899999999999999999999999999999999999888776655554444333
No 435
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=35.21 E-value=1.1e+02 Score=24.79 Aligned_cols=15 Identities=20% Similarity=0.284 Sum_probs=6.0
Q ss_pred hhhhhHHHHHHHHHH
Q 021664 121 ATRRSLSDACNSVAR 135 (309)
Q Consensus 121 VTKRnms~Av~sv~K 135 (309)
+.+.|+.+.++..-+
T Consensus 29 a~~~~v~~~~~~f~~ 43 (113)
T PF02520_consen 29 AEKYGVQDQYNEFKA 43 (113)
T ss_pred HHHCCcHHHHHHHHH
Confidence 344444444433333
No 436
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=35.15 E-value=1.8e+02 Score=26.73 Aligned_cols=80 Identities=15% Similarity=0.081 Sum_probs=44.6
Q ss_pred cchhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHH-HHHHHHHHHhhhchhhhhhhHHHHHH
Q 021664 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEIS-QATQEEVTILRGRSKLIGDEFQSVRD 195 (309)
Q Consensus 117 DlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis-~~i~~eV~~v~~dl~~ig~Dv~~v~~ 195 (309)
|-|--+|+.|++++..+++.|..++..=..+-+-|+.=+..+.+-.+...++. .+-.++...+...|...-.++++++.
T Consensus 28 ~~lv~~rk~la~~~~~fs~al~~L~~~E~~~~~~l~~~l~~lse~~e~i~~~~~~~a~~d~~~Lg~~L~~Y~r~i~a~K~ 107 (198)
T cd07630 28 LKIVNTEQRLANALGHLSSSLQLCVGLDEASVVALNRLCTKLSEALEEAKENIEVVAGNNENTLGLTLDLYSRYSESEKD 107 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34556788999999999988887765432222122222222322222222222 23345566666666667777777765
Q ss_pred H
Q 021664 196 I 196 (309)
Q Consensus 196 ~ 196 (309)
+
T Consensus 108 ~ 108 (198)
T cd07630 108 M 108 (198)
T ss_pred H
Confidence 5
No 437
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=35.13 E-value=1.9e+02 Score=29.15 Aligned_cols=26 Identities=12% Similarity=0.345 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHH
Q 021664 125 SLSDACNSVARQLEDVYSSISAAQRQ 150 (309)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~~aKrh 150 (309)
.+.+..+.+.+++++..+.+...+++
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~ 356 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKN 356 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 438
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=35.09 E-value=3.8e+02 Score=25.08 Aligned_cols=33 Identities=6% Similarity=0.202 Sum_probs=24.0
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 021664 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSK 154 (309)
Q Consensus 122 TKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqR 154 (309)
.++.+.+....+-|++.+.+..|..+|+..-++
T Consensus 113 e~K~~e~~~~kaqk~~~~~~~~l~kaKk~Y~~~ 145 (258)
T cd07655 113 ETKEAEDGFAKAQKPWAKLLKKVEKAKKAYHAA 145 (258)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 367777777777778888888888887765543
No 439
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=35.06 E-value=4.6e+02 Score=27.31 Aligned_cols=55 Identities=18% Similarity=0.322 Sum_probs=35.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhh
Q 021664 158 VDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (309)
Q Consensus 158 vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (309)
|.+.++|..---+..+.+.............++.+++.+|.+||.....+.-|-.
T Consensus 243 vek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~pNeq 297 (561)
T KOG1103|consen 243 VEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRPNEQ 297 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcccc
Confidence 3334444443344444454444445566788999999999999998887765543
No 440
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=35.02 E-value=5.2e+02 Score=27.21 Aligned_cols=44 Identities=11% Similarity=0.256 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhch
Q 021664 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRS 183 (309)
Q Consensus 140 Vs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl 183 (309)
+...++..+++|+..+..++.--++..++...+++++.++...+
T Consensus 76 ~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~ 119 (779)
T PRK11091 76 VVEQLEESRQRLSRLVAKLEEMRERDLELNVQLKDNIAQLNQEI 119 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555655555555554555555555555555554443
No 441
>PHA03332 membrane glycoprotein; Provisional
Probab=34.94 E-value=3.9e+02 Score=31.36 Aligned_cols=54 Identities=20% Similarity=0.369 Sum_probs=27.1
Q ss_pred HHHHhHhhhhhhHHH----HHHHHHHHHHHHHHhhhchhhhhhhHH----HHHHHHHHHHHH
Q 021664 150 QLSSKITSVDRDVNK----IVEISQATQEEVTILRGRSKLIGDEFQ----SVRDIVQTLESK 203 (309)
Q Consensus 150 hLsqRI~~vD~klde----~~eis~~i~~eV~~v~~dl~~ig~Dv~----~v~~~V~~Le~K 203 (309)
.+..||+.+.+.+.+ ...|+..+++.+.++.+.++...++++ .+..-+.+|..+
T Consensus 902 ~tNaAV~~lsDai~klGnti~kisatl~~nI~avNgRIs~Led~VN~r~~~v~~~intLA~q 963 (1328)
T PHA03332 902 GLNARVDKTSDVITKLGDTIAKISATLDNNIRAVNGRVSDLEDQVNLRFLAVATNFNTLATQ 963 (1328)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443322 234555666666666666666555543 334444445444
No 442
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=34.87 E-value=4e+02 Score=28.45 Aligned_cols=74 Identities=20% Similarity=0.229 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHH---hHhhhhhhHHH------HHHH----------------HHHHHHHHHHhhhchhhhhhhHHHH
Q 021664 139 DVYSSISAAQRQLSS---KITSVDRDVNK------IVEI----------------SQATQEEVTILRGRSKLIGDEFQSV 193 (309)
Q Consensus 139 qVs~sL~~aKrhLsq---RI~~vD~klde------~~ei----------------s~~i~~eV~~v~~dl~~ig~Dv~~v 193 (309)
+.-|.+.-|++||.- |||...-++|. -.|+ +-.-+.|+.++|-....-..|++.+
T Consensus 249 n~~E~~~lA~r~l~~~kKe~de~k~~~~l~~~l~~keeL~~s~~~e~~i~qs~~kstas~~E~ee~rve~~~s~ed~~~~ 328 (554)
T KOG4677|consen 249 NELEVRQLALRHLIHFKKEIDEQKLLLDLFRFLDRKEELALSHYREHLIIQSPDKSTASRKEFEETRVELPFSAEDSAHI 328 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHhcccccHHHHHHH
Confidence 345677788888764 44433333333 1122 2233678899999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 021664 194 RDIVQTLESKLIEIEGKQD 212 (309)
Q Consensus 194 ~~~V~~Le~Ki~~ie~kQd 212 (309)
+.-+..|+..|..||+.|.
T Consensus 329 q~q~~~Lrs~~~d~EAq~r 347 (554)
T KOG4677|consen 329 QDQYTLLRSQIIDIEAQDR 347 (554)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999997753
No 443
>PHA00276 phage lambda Rz-like lysis protein
Probab=34.84 E-value=1.7e+02 Score=26.34 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhchhhhhhhHHH
Q 021664 161 DVNKIVEISQATQEEVTILRGRSKLIGDEFQS 192 (309)
Q Consensus 161 klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~ 192 (309)
++.+..+++...++|+..++....++..|+.+
T Consensus 50 ~QqaVaal~~~yqkEladaK~~~DrLiadlRs 81 (144)
T PHA00276 50 TQAAINAVSKEYQEDLAALEGSTDRVIADLRS 81 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHc
Confidence 46777888888899988888877777666653
No 444
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=34.81 E-value=2.3e+02 Score=22.44 Aligned_cols=74 Identities=15% Similarity=0.179 Sum_probs=56.7
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHH
Q 021664 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (309)
Q Consensus 147 aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (309)
+-+.+++.+.+.-..|.+..+-++.+-+++.+=...+...+++.+.++..+..=...|..++ +++.+..-+.++
T Consensus 2 ~s~~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~-r~~~~D~~li~~ 75 (92)
T PF03908_consen 2 ASSDVTESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLE-RRDKTDRILIFF 75 (92)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHH
Confidence 34678889999999999999999999999999999999999999888877766655555554 455555544443
No 445
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=34.80 E-value=4.5e+02 Score=25.80 Aligned_cols=60 Identities=15% Similarity=0.247 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHhh
Q 021664 169 SQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAREL 228 (309)
Q Consensus 169 s~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~~ 228 (309)
.+..+.|+....+++.+...++..+++-+...-+||.+++.+--.-..-|.++=-=++++
T Consensus 202 l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 202 LELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555555555555555666666666666666666655555555455444434443
No 446
>PF14728 PHTB1_C: PTHB1 C-terminus
Probab=34.78 E-value=3.8e+02 Score=27.06 Aligned_cols=77 Identities=19% Similarity=0.310 Sum_probs=59.3
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh--------HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHH
Q 021664 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSK--------ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 191 (309)
Q Consensus 120 fVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqR--------I~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~ 191 (309)
|-.|+++ ....+.|++.+.-.++..|+|-.| ++++|-=||+...-.-..-|++.+++.++.+-+.++.
T Consensus 210 ~~lr~~~----~~~~~~L~~~a~QfRaIQrrlL~r~kd~~p~~l~~L~~LLe~ty~~l~~~~d~~~~~~~~l~~a~~~L~ 285 (377)
T PF14728_consen 210 FELRQEL----KELEEELDERAQQFRAIQRRLLTRFKDKNPAPLDNLDTLLEGTYRQLIALADEIEELQANLKRAGASLS 285 (377)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 4455544 445666777777777788888755 5788999999988888888999999999999999998
Q ss_pred HHHHHHHHH
Q 021664 192 SVRDIVQTL 200 (309)
Q Consensus 192 ~v~~~V~~L 200 (309)
..-+++..|
T Consensus 286 ~~~~Ll~~L 294 (377)
T PF14728_consen 286 CATQLLILL 294 (377)
T ss_pred HHHHHHHHH
Confidence 877776543
No 447
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=34.74 E-value=1.2e+02 Score=23.01 Aligned_cols=38 Identities=11% Similarity=0.327 Sum_probs=25.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHH
Q 021664 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVE 167 (309)
Q Consensus 130 v~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~e 167 (309)
...+-.+.+.+|+.|-.-=.+++.|||.|...+.+...
T Consensus 12 L~qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl~~ 49 (54)
T PF06825_consen 12 LQQMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADLMT 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34455556678888888888999999999988877654
No 448
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=34.59 E-value=4e+02 Score=25.16 Aligned_cols=79 Identities=11% Similarity=0.273 Sum_probs=48.1
Q ss_pred cCcCcchhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhh-------------HHHHHHHHHHHHHHHHHh
Q 021664 113 WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRD-------------VNKIVEISQATQEEVTIL 179 (309)
Q Consensus 113 ws~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~k-------------lde~~eis~~i~~eV~~v 179 (309)
|||+. =|+|.+.+.|..+-++++.|+.-++.-|..+..-....+.+ +...+-.+.+++.+.+.+
T Consensus 70 WsF~s---~~~qk~~~~~~~l~~~~~~~kqdi~t~~e~i~~ek~~r~k~~Te~~~n~~~~~Ll~~~k~eqd~~k~~l~~l 146 (209)
T COG5124 70 WSFKS---QTLQKLYDSSELLKKKIQEVKQDIATYKEEIDKEKATRRKKFTEGQKNYNREALLEKRKKEQDEIKKKLNSL 146 (209)
T ss_pred Eecch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 56654 48999999999999999999988877666665444332222 222233333444444333
Q ss_pred hhchhhhhhhHHHHHH
Q 021664 180 RGRSKLIGDEFQSVRD 195 (309)
Q Consensus 180 ~~dl~~ig~Dv~~v~~ 195 (309)
+. ++-|..|...++.
T Consensus 147 ~~-~~pi~~d~~~~~~ 161 (209)
T COG5124 147 QK-IEPIRWDAAKIQE 161 (209)
T ss_pred cc-cCchhHHHHhhhH
Confidence 32 3556667666653
No 449
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=34.59 E-value=3.7e+02 Score=24.72 Aligned_cols=55 Identities=13% Similarity=0.274 Sum_probs=27.4
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHH
Q 021664 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (309)
Q Consensus 151 LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~ 205 (309)
|.+||......|.+..+-.....+++..++.-.+++...+...+.....++.++.
T Consensus 83 Leq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~ 137 (240)
T PF12795_consen 83 LEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQ 137 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555555555555555555555444444444444444444444444444
No 450
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=34.51 E-value=4.1e+02 Score=29.64 Aligned_cols=80 Identities=16% Similarity=0.285 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH---HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHH
Q 021664 126 LSDACNSVARQLEDVYSSISAAQRQ---LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (309)
Q Consensus 126 ms~Av~sv~KqLeqVs~sL~~aKrh---LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~ 202 (309)
+.+.-..+-.|++-+-++|.+...| |..=++++--+||+-......=...+..+..+.+....+|..++.+..--|.
T Consensus 313 ~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ 392 (775)
T PF10174_consen 313 LEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKER 392 (775)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566678888888888877654 4445555555555544444444444444444444444444444444333333
Q ss_pred HHH
Q 021664 203 KLI 205 (309)
Q Consensus 203 Ki~ 205 (309)
||.
T Consensus 393 ki~ 395 (775)
T PF10174_consen 393 KIN 395 (775)
T ss_pred HHH
Confidence 333
No 451
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=34.39 E-value=3.1e+02 Score=23.72 Aligned_cols=19 Identities=5% Similarity=0.209 Sum_probs=9.3
Q ss_pred hhhhhhhHHHHHHHHHHHH
Q 021664 183 SKLIGDEFQSVRDIVQTLE 201 (309)
Q Consensus 183 l~~ig~Dv~~v~~~V~~Le 201 (309)
.++..+|++..+..+..++
T Consensus 92 ~~~l~~ei~~~~~~~sd~~ 110 (115)
T COG4980 92 IERLKSEIEDLQEAISDET 110 (115)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555554444443
No 452
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=34.31 E-value=12 Score=28.36 Aligned_cols=18 Identities=33% Similarity=0.564 Sum_probs=15.9
Q ss_pred ceeeeEcCcccceeeccC
Q 021664 7 KLTFLVGAGILTSVLAKE 24 (309)
Q Consensus 7 Kv~ILvGAG~~GSvl~kn 24 (309)
|++++.|+|++.|.++++
T Consensus 1 kIlvvC~~Gi~TS~~~~~ 18 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVAN 18 (90)
T ss_dssp EEEEEESSSSHHHHHHHH
T ss_pred CEEEECCChHHHHHHHHH
Confidence 799999999999988854
No 453
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=34.29 E-value=4.8e+02 Score=25.94 Aligned_cols=71 Identities=15% Similarity=0.265 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh---hhhhhHHHHHHHHHHHHHHHHH
Q 021664 136 QLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK---LIGDEFQSVRDIVQTLESKLIE 206 (309)
Q Consensus 136 qLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~---~ig~Dv~~v~~~V~~Le~Ki~~ 206 (309)
-|-.--.++.+-|+.+..+|.-+-.+-++..+-.....+++.+++.+.. .-|.++.++...++-||-+.-.
T Consensus 52 E~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T 125 (294)
T COG1340 52 ELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQT 125 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHh
Confidence 3334445666777777888888888888888777777888777777777 5577777777776666666543
No 454
>PRK09458 pspB phage shock protein B; Provisional
Probab=34.26 E-value=28 Score=28.02 Aligned_cols=44 Identities=7% Similarity=0.300 Sum_probs=28.4
Q ss_pred chhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHH
Q 021664 118 MMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (309)
Q Consensus 118 lMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde 164 (309)
|=|.||+.-+.. ++.+=++-=+.|...-+++.+||+.|.+=||.
T Consensus 24 LHY~sk~~~~~~---Ls~~d~~~L~~L~~~A~rm~~RI~tLE~ILDa 67 (75)
T PRK09458 24 LHYRSKRQGSQG---LSQEEQQRLAQLTEKAERMRERIQALEAILDA 67 (75)
T ss_pred HhhcccccCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 457888775542 33333333444555667899999999887774
No 455
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=34.20 E-value=1.4e+02 Score=22.92 Aligned_cols=52 Identities=10% Similarity=0.104 Sum_probs=29.7
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHH
Q 021664 154 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (309)
Q Consensus 154 RI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~ 205 (309)
|+..++.+|-.....-+.+.+.-......+.++..-++-+++.+-.|..|+|
T Consensus 2 ~~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~mv~L~kKiD 53 (57)
T PF02346_consen 2 RIKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYMVILAKKID 53 (57)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444444444444444444444444455556666667777777777777765
No 456
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=34.07 E-value=85 Score=24.88 Aligned_cols=57 Identities=12% Similarity=0.206 Sum_probs=36.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhh
Q 021664 131 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGD 188 (309)
Q Consensus 131 ~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~ 188 (309)
.++.+....+---|..||..+ ..+..++...++|.+-.++.++++..-+.-|..++.
T Consensus 24 kd~~~~~~~lk~Klq~ar~~i-~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~ 80 (83)
T PF07544_consen 24 KDLDTATGSLKHKLQKARAAI-RELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKE 80 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555544 346668888888888888888888666666555543
No 457
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=34.03 E-value=3e+02 Score=28.89 Aligned_cols=69 Identities=10% Similarity=0.179 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHHHH-----HHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 021664 141 YSSISAAQRQLSSKITSVDRDVNKI-----VEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (309)
Q Consensus 141 s~sL~~aKrhLsqRI~~vD~klde~-----~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (309)
......+|.+|..-|.++.++|++. .+-.+.+++.+.+..+-|.. +|.+.+++....|+.++..++.++
T Consensus 522 ~~~~~eakN~le~~i~~~~~~l~~~~~~~~~~e~~~i~~~l~~~~~wL~~--~~~~~i~~k~~~L~~~~~~~~~~~ 595 (627)
T PRK00290 522 RKELVEARNQADSLIYQTEKTLKELGDKVPADEKEKIEAAIKELKEALKG--EDKEAIKAKTEELTQASQKLGEAM 595 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556777777777788887642 22234444555555555442 367778877788888777777643
No 458
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=33.91 E-value=24 Score=29.10 Aligned_cols=74 Identities=14% Similarity=0.236 Sum_probs=39.5
Q ss_pred ceeeeEcCcccceeeccCCCCcchhhhhhhHHHHHHHhhhcCCCCCCCccchhH--HHHHHHHHHHHHhcC--CCceEEE
Q 021664 7 KLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFND--LLAEVSSVQQELSHV--PRSVIIE 82 (309)
Q Consensus 7 Kv~ILvGAG~~GSvl~knGkLsdv~~~lsg~lk~l~k~lk~~d~s~s~~~~~~d--L~aQV~~LaqEl~~L--sr~iTVv 82 (309)
||+++.|+|+..|++++. +....... | +..-+.+...+..+. ...+.+- +.-||+..-.++++. ..||.++
T Consensus 5 kIllvC~~G~sTSll~~k--m~~~~~~~-g-i~~~V~A~~~~~~~~-~~~~~DviLl~Pqi~~~~~~i~~~~~~~pV~~I 79 (106)
T PRK10499 5 HIYLFCSAGMSTSLLVSK--MRAQAEKY-E-VPVIIEAFPETLAGE-KGQNADVVLLGPQIAYMLPEIQRLLPNKPVEVI 79 (106)
T ss_pred EEEEECCCCccHHHHHHH--HHHHHHHC-C-CCEEEEEeecchhhc-cccCCCEEEECHHHHHHHHHHHhhcCCCCEEEE
Confidence 799999999999999843 22111000 0 000000000000001 1122322 455999999999987 4688888
Q ss_pred eCC
Q 021664 83 TSS 85 (309)
Q Consensus 83 n~~ 85 (309)
+.-
T Consensus 80 ~~~ 82 (106)
T PRK10499 80 DSL 82 (106)
T ss_pred ChH
Confidence 753
No 459
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.76 E-value=4.3e+02 Score=27.68 Aligned_cols=86 Identities=17% Similarity=0.232 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHHH----------------------HHHHHHHhHhhhhhhHHHHHHHHHHHHHHH------
Q 021664 125 SLSDACNSVARQLEDVYSSISA----------------------AQRQLSSKITSVDRDVNKIVEISQATQEEV------ 176 (309)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~~----------------------aKrhLsqRI~~vD~klde~~eis~~i~~eV------ 176 (309)
++-+|.+.+.||+|.+.+.+.. +|+-+..+|++.+.+++....+--+|.+-.
T Consensus 237 ~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~nkvvl 316 (439)
T KOG2911|consen 237 DLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQTNKVVL 316 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcccHHHH
Confidence 5667777888888877766543 345566778888888888887777766542
Q ss_pred -------HHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 021664 177 -------TILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (309)
Q Consensus 177 -------~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (309)
..++.-+.+ +.-.++|+.++..+..-+++=++=+
T Consensus 317 ~AyksGs~alK~il~~-~~s~ekVed~Ldev~et~d~~~EV~ 357 (439)
T KOG2911|consen 317 QAYKSGSEALKAILAQ-GGSTEKVEDVLDEVNETLDRQEEVE 357 (439)
T ss_pred HHHHHhHHHHHHHHhc-cCChhhHHHHHHHHHHHHhhHHHHH
Confidence 223333333 3444667777777766666555433
No 460
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=33.65 E-value=3.4e+02 Score=29.19 Aligned_cols=36 Identities=11% Similarity=0.250 Sum_probs=13.6
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhh
Q 021664 154 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE 189 (309)
Q Consensus 154 RI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~D 189 (309)
+|+.+...++....-.+++.+++.+.+....++..+
T Consensus 343 ~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~ 378 (594)
T PF05667_consen 343 QIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEE 378 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 461
>PRK12482 flagellar motor protein MotA; Provisional
Probab=33.56 E-value=2.3e+02 Score=27.67 Aligned_cols=93 Identities=15% Similarity=0.213 Sum_probs=67.4
Q ss_pred hHHHHHHhhhheeeEEecc-----cCcCcchhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhh---hhhHHHH
Q 021664 94 YGVIVVIVAVGYGYVWWKG-----WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSV---DRDVNKI 165 (309)
Q Consensus 94 y~l~a~iGavGYgYmwWKG-----ws~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~v---D~klde~ 165 (309)
.|+++++|++..||+.=.| |.++-+|-|-=-.+ ++.-++.-++++-..+...|+-+..+-.+. .+-++..
T Consensus 5 iGlv~~~~~v~~g~~l~Gg~~~~~~~~~~~lIV~GGt~--ga~lis~p~~~~~~~~k~~~~~f~~~~~~~~~y~~~i~~l 82 (287)
T PRK12482 5 FGLLVVMGCVFGGYLMSGGSLSSIWQPGEIIIILGAGI--GAMILGNPKSVLKEMWHQIKGVIRRKEYGVEFQRQLLLLL 82 (287)
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHhHHHHHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Confidence 4566777888888776444 55666666665544 345567888999999999999887765555 4778888
Q ss_pred HHHHHHHHHH-HHHhhhchhhhhh
Q 021664 166 VEISQATQEE-VTILRGRSKLIGD 188 (309)
Q Consensus 166 ~eis~~i~~e-V~~v~~dl~~ig~ 188 (309)
.|+++.-|.| +-.+..+++++.+
T Consensus 83 v~ls~~aRr~GllaLE~~i~~~~d 106 (287)
T PRK12482 83 YELLEMVQEGGLKRLDQHIEIPEE 106 (287)
T ss_pred HHHHHHHHhcCHHHHHHhhcCccc
Confidence 9999888887 6666666666664
No 462
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=33.56 E-value=4.3e+02 Score=28.90 Aligned_cols=76 Identities=13% Similarity=0.294 Sum_probs=48.3
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhh-----------chhhhhhhHHHHHHHHHHHHHH
Q 021664 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG-----------RSKLIGDEFQSVRDIVQTLESK 203 (309)
Q Consensus 135 KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~-----------dl~~ig~Dv~~v~~~V~~Le~K 203 (309)
++.-.+..-|.+.+..+..+++-+++|++.+....+.++++.++.+. .+.-|=.|++.=++.+..||..
T Consensus 178 q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e 257 (629)
T KOG0963|consen 178 QEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLERE 257 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555666666666666666665555555555554444 4667777888888888888888
Q ss_pred HHHhhhh
Q 021664 204 LIEIEGK 210 (309)
Q Consensus 204 i~~ie~k 210 (309)
+..+...
T Consensus 258 ~e~L~~q 264 (629)
T KOG0963|consen 258 VEQLREQ 264 (629)
T ss_pred HHHHHHH
Confidence 8777644
No 463
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=33.42 E-value=2.9e+02 Score=32.06 Aligned_cols=86 Identities=17% Similarity=0.240 Sum_probs=42.9
Q ss_pred cCcchhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHH
Q 021664 115 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (309)
Q Consensus 115 ~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~ 194 (309)
+-++++ ||+ -+.+|..++.-+-.-|+-.+..+++-=..++....| .+.+.+++.+.+-.++.|..++++..
T Consensus 668 l~ei~~--~~~---e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~E----l~~~~~~i~~~~p~i~~i~r~l~~~e 738 (1141)
T KOG0018|consen 668 LKEIQK--RRK---EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELE----LQRTESEIDEFGPEISEIKRKLQNRE 738 (1141)
T ss_pred HHHHHH--hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhCchHHHHHHHHHHHH
Confidence 445566 444 566666677666666666666665432333332222 22333344444444444444444444
Q ss_pred HHHHHHHHHHHHhhh
Q 021664 195 DIVQTLESKLIEIEG 209 (309)
Q Consensus 195 ~~V~~Le~Ki~~ie~ 209 (309)
..+..|+.++..+|.
T Consensus 739 ~~~~~L~~~~n~ved 753 (1141)
T KOG0018|consen 739 GEMKELEERMNKVED 753 (1141)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 464
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=33.35 E-value=2.6e+02 Score=22.69 Aligned_cols=81 Identities=11% Similarity=0.194 Sum_probs=56.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021664 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (309)
Q Consensus 130 v~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (309)
....-..+++-.+.|......|..++.+.|.=+.+..+=...-......-...-.....++..++.-+..|...+..++.
T Consensus 23 ~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~ 102 (126)
T PF13863_consen 23 IERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEE 102 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888888888888888888888888777666555555555555566666666666666666666666655
Q ss_pred h
Q 021664 210 K 210 (309)
Q Consensus 210 k 210 (309)
+
T Consensus 103 ~ 103 (126)
T PF13863_consen 103 K 103 (126)
T ss_pred H
Confidence 4
No 465
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=33.27 E-value=95 Score=26.40 Aligned_cols=53 Identities=9% Similarity=0.240 Sum_probs=39.4
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHH
Q 021664 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (309)
Q Consensus 148 KrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~L 200 (309)
|+.|-.++..+...+.+..+-...++++|.++-+.=....-+-+.++..+..+
T Consensus 3 k~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 3 KKEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67788888888888888888888888888777776666666666777555544
No 466
>PRK15396 murein lipoprotein; Provisional
Probab=33.20 E-value=1.5e+02 Score=23.82 Aligned_cols=6 Identities=0% Similarity=0.047 Sum_probs=2.2
Q ss_pred HhHHHH
Q 021664 214 TTLGVK 219 (309)
Q Consensus 214 Tn~GV~ 219 (309)
+|.-++
T Consensus 65 aN~RlD 70 (78)
T PRK15396 65 ANQRLD 70 (78)
T ss_pred HHHHHH
Confidence 333333
No 467
>KOG4670 consensus Uncharacterized conserved membrane protein [Function unknown]
Probab=33.09 E-value=24 Score=37.49 Aligned_cols=82 Identities=12% Similarity=0.174 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHH--HhhhhhhhHhH
Q 021664 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI--EIEGKQDITTL 216 (309)
Q Consensus 139 qVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~--~ie~kQd~Tn~ 216 (309)
+.+-.+. .=.-|.|.|+.|+..++++.+..+.=--.+...+.++..|..|..... ...|+-=+- ....+|++.-+
T Consensus 368 R~win~t-iL~plvqeI~~vn~qfr~q~a~p~lqig~~sV~~lk~aAi~~~~~~~~--~p~lp~llpfLd~~snqeYlvq 444 (602)
T KOG4670|consen 368 RLWINLT-ILDPLVQEIRTVNQQFRQQQAQPQLQIGLISVMQLKVAAISEHRRLQG--LPKLPWLLPFLDRSSNQEYLVQ 444 (602)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccceechhhHHHHHHHHHHHhhhhcc--CCccchhhhhccCCccHHHHHH
Confidence 3343333 445688999999999998877766555566666666666655532221 111221111 34577999999
Q ss_pred HHHHHHH
Q 021664 217 GVKKLCD 223 (309)
Q Consensus 217 GV~~LC~ 223 (309)
-|+.||+
T Consensus 445 RIKeLaq 451 (602)
T KOG4670|consen 445 RIKELAQ 451 (602)
T ss_pred HHHHHhh
Confidence 9999998
No 468
>PRK01156 chromosome segregation protein; Provisional
Probab=33.07 E-value=3.1e+02 Score=29.82 Aligned_cols=46 Identities=9% Similarity=0.176 Sum_probs=22.9
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHH
Q 021664 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (309)
Q Consensus 149 rhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~ 194 (309)
+.+...|+.+..++.+..+....+..++..++..+..+...++.+.
T Consensus 193 ~~~e~eL~~~~~~i~el~~~~~~l~~~i~~~~~el~~~~~~l~~l~ 238 (895)
T PRK01156 193 KSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLK 238 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555544444444444443
No 469
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=33.00 E-value=4.9e+02 Score=28.04 Aligned_cols=92 Identities=20% Similarity=0.297 Sum_probs=57.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh-------hhchhhhhhhHHHHHHHHHHHHHH
Q 021664 131 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL-------RGRSKLIGDEFQSVRDIVQTLESK 203 (309)
Q Consensus 131 ~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v-------~~dl~~ig~Dv~~v~~~V~~Le~K 203 (309)
+.+-.+++.+++-+..|. ++++.|+.++.|-.+++.=..-..+-|..+ -+.+++...+++....-+..|-.+
T Consensus 274 ~~lk~~n~~l~e~i~ea~-k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~ 352 (622)
T COG5185 274 ANLKTQNDNLYEKIQEAM-KISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSN 352 (622)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445666777777764 478888888877665544333333333333 345666666776666667777777
Q ss_pred HHHhh---hhhhhHhHHHHHHHH
Q 021664 204 LIEIE---GKQDITTLGVKKLCD 223 (309)
Q Consensus 204 i~~ie---~kQd~Tn~GV~~LC~ 223 (309)
++++. .||++...-+....+
T Consensus 353 ~d~L~~q~~kq~Is~e~fe~mn~ 375 (622)
T COG5185 353 IDELHKQLRKQGISTEQFELMNQ 375 (622)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHH
Confidence 77766 467777776666643
No 470
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=32.99 E-value=1.7e+02 Score=20.36 Aligned_cols=25 Identities=8% Similarity=0.300 Sum_probs=11.3
Q ss_pred HhHhhhhhhHHHHHHHHHHHHHHHH
Q 021664 153 SKITSVDRDVNKIVEISQATQEEVT 177 (309)
Q Consensus 153 qRI~~vD~klde~~eis~~i~~eV~ 177 (309)
++|+++...+.++.++...|..+|.
T Consensus 12 ~~l~~l~~~i~~l~~l~~~i~~~v~ 36 (66)
T smart00397 12 EELEQLEKSIGELKQIFLDMGTELE 36 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 471
>COG2096 cob(I)alamin adenosyltransferase [Coenzyme transport and metabolism]
Probab=32.95 E-value=1.1e+02 Score=28.26 Aligned_cols=64 Identities=19% Similarity=0.212 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhh-hHHHHHHHHHHHHHHHHHhhh
Q 021664 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGD-EFQSVRDIVQTLESKLIEIEG 209 (309)
Q Consensus 137 LeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~-Dv~~v~~~V~~Le~Ki~~ie~ 209 (309)
+|...+.|--|+.|+.. +++.++-..||+++..+..|++.-++ -..--...|.-||..|++.+.
T Consensus 38 lDElNs~IG~A~~~~~~---------~~i~~~L~~IQ~~LF~lG~dLat~~~~~~~i~~e~v~~LE~~id~y~~ 102 (184)
T COG2096 38 LDELNSFIGLARALLKD---------EDIRAILRRIQNDLFDLGADLATPEEKPLRITEEDVKRLEKRIDAYNA 102 (184)
T ss_pred HHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHHHHHhhhhhcCCCccccccCHHHHHHHHHHHHHHHh
Confidence 57777777777777654 78888889999999999999988771 011234456666666665553
No 472
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.88 E-value=1.9e+02 Score=30.65 Aligned_cols=62 Identities=16% Similarity=0.175 Sum_probs=34.0
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 021664 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (309)
Q Consensus 149 rhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (309)
+.|.+|+.-=|...+.-.+..+.|.++|++++..=...=--|...++.-..|+.+|=+|--|
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ik 398 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIK 398 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777777777777776321122222333444444444444444333
No 473
>PTZ00464 SNF-7-like protein; Provisional
Probab=32.86 E-value=4.1e+02 Score=24.77 Aligned_cols=28 Identities=7% Similarity=0.266 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 021664 124 RSLSDACNSVARQLEDVYSSISAAQRQL 151 (309)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhL 151 (309)
+++.+-+..+.|.++++...++.+|+++
T Consensus 21 ~~l~~r~~~l~kKi~~ld~E~~~ak~~~ 48 (211)
T PTZ00464 21 KRIGGRSEVVDARINKIDAELMKLKEQI 48 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555656665555665554
No 474
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=32.82 E-value=2.7e+02 Score=22.57 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHH
Q 021664 170 QATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKK 220 (309)
Q Consensus 170 ~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~ 220 (309)
....++|..+..|-+++-.+++....-...||.-=.++...=+.+...|..
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~ 85 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRA 85 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666666666666666666666666555555555555555543
No 475
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=32.81 E-value=2.8e+02 Score=22.85 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=21.8
Q ss_pred HHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHhhc
Q 021664 177 TILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELE 229 (309)
Q Consensus 177 ~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~~~ 229 (309)
..+...++.+...-+.++..+..-..+|...-....+... ...++.++...+
T Consensus 75 ~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~-~~~l~~wl~~~e 126 (213)
T cd00176 75 EEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRD-ADDLEQWLEEKE 126 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3344444444444444444444444444433332222222 222666665544
No 476
>KOG3583 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.70 E-value=2.9e+02 Score=26.91 Aligned_cols=41 Identities=12% Similarity=0.116 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhh-----------hhhhHhHHHHHHHHHHHhhc
Q 021664 189 EFQSVRDIVQTLESKLIEIEG-----------KQDITTLGVKKLCDRARELE 229 (309)
Q Consensus 189 Dv~~v~~~V~~Le~Ki~~ie~-----------kQd~Tn~GV~~LC~f~~~~~ 229 (309)
.|.+.+.++++|=++|...+. +|.+...---.|+..+.-.|
T Consensus 138 QI~~yNK~is~ll~~lsk~~re~tEs~~~~piqQT~n~~dT~~lVaaV~~Gk 189 (279)
T KOG3583|consen 138 QIAAYNKNISGLLNHLSKVDREHTESAIEKPIQQTYNRDDTAKLVAAVLTGK 189 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccChhHHHHHHHHHHhcc
Confidence 356777888888877775542 24454455556666554333
No 477
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=32.65 E-value=3.7e+02 Score=27.94 Aligned_cols=59 Identities=15% Similarity=0.253 Sum_probs=40.0
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 021664 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (309)
Q Consensus 121 VTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v 179 (309)
+.|..+-.+-..+.+++.++++.|...++.+.++|+..-++++...+-...+.+++..+
T Consensus 128 ~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~~~ 186 (547)
T PRK08147 128 AARQALIGKAEGLVNQFKTTDQYLRDQDKGVNTAIGSSVDQINNYAKQIASLNDQITRL 186 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55777777777788888888888888888777777666555555555555555555443
No 478
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=32.64 E-value=2.2e+02 Score=21.53 Aligned_cols=59 Identities=8% Similarity=0.277 Sum_probs=40.3
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021664 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (309)
Q Consensus 148 KrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (309)
++.+.+||+.+-.+++.-..+-+...+=+.....+-.. .+...++.....-..||+.+.
T Consensus 4 ~~~~~~~l~~L~~~l~~E~~~r~Gaenm~~~~~~~~~~--~~~~~~~~~l~es~~ki~~Lr 62 (72)
T cd00089 4 RSKLQSRLERLEKELSIELKVKEGAENLLRLYSDEKKK--KLLAEAEQMLRESKQKLELLK 62 (72)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--cCHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999988888887777755444333211 467777777666667766554
No 479
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=32.60 E-value=2.3e+02 Score=28.50 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 021664 124 RSLSDACNSVARQLEDVYSSISAAQRQL 151 (309)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhL 151 (309)
|.-..-++.+++..++-+.+|...|++|
T Consensus 21 r~Y~qKleel~~lQ~~C~ssI~~QkkrL 48 (330)
T PF07851_consen 21 RSYKQKLEELSKLQDKCSSSISHQKKRL 48 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555566666666666666554
No 480
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=32.58 E-value=3.6e+02 Score=28.81 Aligned_cols=38 Identities=13% Similarity=0.108 Sum_probs=18.3
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh
Q 021664 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (309)
Q Consensus 147 aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~ 184 (309)
-|.|.++||+.|-.++.....=.....+|...++..++
T Consensus 414 Ik~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~ 451 (518)
T PF10212_consen 414 IKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLE 451 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666555555444333334444433333333
No 481
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=32.37 E-value=2e+02 Score=26.83 Aligned_cols=55 Identities=13% Similarity=0.381 Sum_probs=0.0
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Q 021664 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (309)
Q Consensus 149 rhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (309)
++|..-+-.|...|.|-+|-+++|++-. ..|++.+|+.|+-+-.==..+++|-|+
T Consensus 50 ~eLkNeLREVREELkEKmeEIKQIKdiM----------DKDFDKL~EFVEIMKeMQkDMDEKMDv 104 (205)
T PF15079_consen 50 QELKNELREVREELKEKMEEIKQIKDIM----------DKDFDKLHEFVEIMKEMQKDMDEKMDV 104 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHHHHhHHHhhhH
No 482
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=32.29 E-value=2.5e+02 Score=21.98 Aligned_cols=55 Identities=13% Similarity=0.205 Sum_probs=30.0
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHH
Q 021664 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (309)
Q Consensus 151 LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~ 205 (309)
|...-++|..+-.....+++..+.++.+.-..+......++....-+..|+.++.
T Consensus 17 L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 17 LMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334455555555666666666666655555555555555555555555555444
No 483
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=32.23 E-value=4.6e+02 Score=25.08 Aligned_cols=82 Identities=12% Similarity=0.224 Sum_probs=69.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHH----------HHHHHHHHHHHhhhchhhhhhhHHHHHHH
Q 021664 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVE----------ISQATQEEVTILRGRSKLIGDEFQSVRDI 196 (309)
Q Consensus 127 s~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~e----------is~~i~~eV~~v~~dl~~ig~Dv~~v~~~ 196 (309)
++-+|.+-+.|+.....-..+....+.||+.+..||-.|.+ ..+..+.+...+-...++-.+-...-+++
T Consensus 20 td~IN~lE~~L~~ar~~fr~~l~e~~~kL~~~~kkLg~~I~karPYyea~~~a~~aq~e~q~Aa~~yerA~~~h~aAKe~ 99 (239)
T PF05276_consen 20 TDEINRLENELDEARATFRRLLSESTKKLNELAKKLGSCIEKARPYYEARRKAKEAQQEAQKAALQYERANSMHAAAKEM 99 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788899999999999999999999999999988765 44677788888888888888888999999
Q ss_pred HHHHHHHHHHhh
Q 021664 197 VQTLESKLIEIE 208 (309)
Q Consensus 197 V~~Le~Ki~~ie 208 (309)
|.-+|..+.+=.
T Consensus 100 v~laEq~l~~~~ 111 (239)
T PF05276_consen 100 VALAEQSLMSDS 111 (239)
T ss_pred HHHHHHHHhcCC
Confidence 999998887644
No 484
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=32.23 E-value=5e+02 Score=25.51 Aligned_cols=71 Identities=11% Similarity=0.229 Sum_probs=33.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHH----------HHHhHhhhhhhHHHH-HHHHHHHHHHHHHhhhchhhhhhhHHHHHHHH
Q 021664 129 ACNSVARQLEDVYSSISAAQRQ----------LSSKITSVDRDVNKI-VEISQATQEEVTILRGRSKLIGDEFQSVRDIV 197 (309)
Q Consensus 129 Av~sv~KqLeqVs~sL~~aKrh----------LsqRI~~vD~klde~-~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V 197 (309)
....+-.+|.++...++..+.. +..+|+.+...+++. ..+...++.+...++.....+...++..+.-+
T Consensus 255 ~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 334 (444)
T TIGR03017 255 IIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKV 334 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555554432 445556665555432 23334444444444444444444444444433
Q ss_pred HH
Q 021664 198 QT 199 (309)
Q Consensus 198 ~~ 199 (309)
..
T Consensus 335 ~~ 336 (444)
T TIGR03017 335 LE 336 (444)
T ss_pred HH
Confidence 33
No 485
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=32.13 E-value=1.1e+02 Score=31.78 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 021664 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQE 174 (309)
Q Consensus 126 ms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~ 174 (309)
..||+..+-+|+|+.-.. ++..||+|-...++...-|-+..++
T Consensus 117 i~~~~~el~~q~e~~ea~------e~e~~~erh~~h~~~le~i~~~l~n 159 (548)
T COG5665 117 IHDCLDELQKQLEQYEAQ------ENEEQTERHEFHIANLENILKKLQN 159 (548)
T ss_pred HHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 689999999999986543 8889999999888888777776665
No 486
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=32.05 E-value=1.1e+02 Score=29.47 Aligned_cols=72 Identities=13% Similarity=0.153 Sum_probs=44.3
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH-HHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHH
Q 021664 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIV-EISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (309)
Q Consensus 135 KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~-eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ 206 (309)
.+|-++...+...|+.|...-+-+...+.... .+.+.+++...++..++.+..+.++..++++..|=+-..+
T Consensus 180 ~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~~~~~~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s 252 (322)
T COG0598 180 ERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWLSEEDREYLRDVLDHLTQLIEMLEALRERLSSLLDAYLS 252 (322)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666655454444444443 5666777777777777777777777777777665444433
No 487
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=31.89 E-value=1.7e+02 Score=29.73 Aligned_cols=72 Identities=15% Similarity=0.196 Sum_probs=44.4
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhh---hhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHH
Q 021664 154 KITSVDRDVNKIVEISQATQEEVTILRGRSKL---IGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRA 225 (309)
Q Consensus 154 RI~~vD~klde~~eis~~i~~eV~~v~~dl~~---ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~ 225 (309)
+|-.+|.+.-+...-....+.+.+++...+.. -+.|.+.+..-+..|..+|..+|.+......-+..++.-+
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 103 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRI 103 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34445555555555555555555555555433 2235667777777888888888888877777777765533
No 488
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=31.83 E-value=2.1e+02 Score=27.89 Aligned_cols=30 Identities=13% Similarity=0.283 Sum_probs=14.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhHhhhhhhH
Q 021664 133 VARQLEDVYSSISAAQRQLSSKITSVDRDV 162 (309)
Q Consensus 133 v~KqLeqVs~sL~~aKrhLsqRI~~vD~kl 162 (309)
.-|-|||=-+.|.+..++|-+-++.+..|+
T Consensus 128 ~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~ 157 (254)
T KOG2196|consen 128 DQKRLDQELEFILSQQQELEDLLDPLETKL 157 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555444444444443
No 489
>TIGR00153 conserved hypothetical protein TIGR00153. An apparent homolog with a suggested function is Pit accessory protein from Sinorhizobium meliloti, which may be involved in phosphate (Pi) transport.
Probab=31.79 E-value=3.6e+02 Score=24.28 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHhh
Q 021664 193 VRDIVQTLESKLIEIE 208 (309)
Q Consensus 193 v~~~V~~Le~Ki~~ie 208 (309)
.-.-|..+|.+.+.+.
T Consensus 152 ~~~~I~~lE~e~D~i~ 167 (216)
T TIGR00153 152 IIKEIKDLEDEIDVMQ 167 (216)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334566666666554
No 490
>PRK09303 adaptive-response sensory kinase; Validated
Probab=31.76 E-value=1.1e+02 Score=29.42 Aligned_cols=19 Identities=5% Similarity=0.039 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhhhchhhh
Q 021664 168 ISQATQEEVTILRGRSKLI 186 (309)
Q Consensus 168 is~~i~~eV~~v~~dl~~i 186 (309)
++-++++-++.++.-++.+
T Consensus 158 iaHeLrtPLt~i~~~~e~l 176 (380)
T PRK09303 158 LAHDLRTPLTAASLALETL 176 (380)
T ss_pred HhHhhcchHHHHHHHHHHH
Confidence 4445555555555444433
No 491
>PF14661 HAUS6_N: HAUS augmin-like complex subunit 6 N-terminus
Probab=31.62 E-value=4.3e+02 Score=24.62 Aligned_cols=87 Identities=14% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhH------HHHHHHHHH
Q 021664 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEF------QSVRDIVQT 199 (309)
Q Consensus 126 ms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv------~~v~~~V~~ 199 (309)
++.+-..=...++....-+.+.++.+.+-+++-+...++-.+.++.+.+++.++...-....... +.-..-+..
T Consensus 144 ~~~~~~~~~~~~~~~~a~~~~~r~~~~~~~~~~~~~~~~~~~~aq~L~~k~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (247)
T PF14661_consen 144 LAEAFRLKPQDLHELLARILAHRNSFLQILQEKDAARQKYQEFAQLLRKKYRELSAECAELQAQLKKLQKSDASNRQLWE 223 (247)
T ss_pred hhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHH
Q ss_pred ---------HHHHHHHhhhhhh
Q 021664 200 ---------LESKLIEIEGKQD 212 (309)
Q Consensus 200 ---------Le~Ki~~ie~kQd 212 (309)
+..+++.|...+.
T Consensus 224 ~~~~~w~~~~~~~~~kvr~~W~ 245 (247)
T PF14661_consen 224 QVRNNWSGSLQEKIQKVRELWM 245 (247)
T ss_pred HHHHhhchhhHHHHHHHHHHHh
No 492
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=31.55 E-value=3.1e+02 Score=29.39 Aligned_cols=76 Identities=16% Similarity=0.343 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHH---HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHH
Q 021664 124 RSLSDACNSVARQLEDVYSSISAAQRQLS---SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT 199 (309)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLs---qRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~ 199 (309)
+-+.+=++..-+.+++--..+..++..+. .||..+..++.-.+.-.+.+.+|+..++...++|..+++.++.-+..
T Consensus 116 ~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~ 194 (546)
T KOG0977|consen 116 TKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD 194 (546)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
No 493
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=31.52 E-value=3.7e+02 Score=27.93 Aligned_cols=88 Identities=10% Similarity=0.186 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHH--HhHHHHHHHHHHHHHHHHHhHhhhhhhHHH-----HHHHHHHHHHHHHHhhhchhhhhhhHHHHH
Q 021664 122 TRRSLSDACNSVA--RQLEDVYSSISAAQRQLSSKITSVDRDVNK-----IVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (309)
Q Consensus 122 TKRnms~Av~sv~--KqLeqVs~sL~~aKrhLsqRI~~vD~klde-----~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~ 194 (309)
++..+..+..... ..-|........+|.+|-.-|-.+.++|++ ..+-.+.+++.+.+.++=|. ..|...++
T Consensus 499 s~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~~~~~wL~--~~d~~~i~ 576 (595)
T TIGR02350 499 SEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLKEAGDKLPAEEKEKIEKAVAELKEALK--GEDVEEIK 576 (595)
T ss_pred CHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHh--cCCHHHHH
Q ss_pred HHHHHHHHHHHHhhhhh
Q 021664 195 DIVQTLESKLIEIEGKQ 211 (309)
Q Consensus 195 ~~V~~Le~Ki~~ie~kQ 211 (309)
...+.|+..++.++.++
T Consensus 577 ~~~~~l~~~~~~~~~~~ 593 (595)
T TIGR02350 577 AKTEELQQALQKLAEAM 593 (595)
T ss_pred HHHHHHHHHHHHHHHHH
No 494
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=31.44 E-value=2.2e+02 Score=31.07 Aligned_cols=84 Identities=17% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHH
Q 021664 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (309)
Q Consensus 127 s~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ 206 (309)
+.||+.-...-....|++..-++.|-..|.+|-..|-.-.|-....+.|+.++|.-...-..|.+.+...+..|-+|=..
T Consensus 526 ar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~ 605 (697)
T PF09726_consen 526 ARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQH 605 (697)
T ss_pred hhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q ss_pred hhhh
Q 021664 207 IEGK 210 (309)
Q Consensus 207 ie~k 210 (309)
+|.+
T Consensus 606 LE~s 609 (697)
T PF09726_consen 606 LENS 609 (697)
T ss_pred HHHh
No 495
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=31.37 E-value=2.9e+02 Score=22.78 Aligned_cols=60 Identities=12% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 021664 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (309)
Q Consensus 151 LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (309)
.+.||+++..+.+.+.+..++-++...+++.++.....=+...+..=..++.+.+....+
T Consensus 23 qs~~i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~ 82 (110)
T PF10828_consen 23 QSQRIDRLRAENKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERRES 82 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=31.35 E-value=4.3e+02 Score=28.42 Aligned_cols=104 Identities=18% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHH
Q 021664 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (309)
Q Consensus 126 ms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~ 205 (309)
+...-..+++...++..--.+=+..+..=|+...++.-+...-....++|+.+++..+...-.+....+.-+..++..++
T Consensus 72 i~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~ 151 (546)
T KOG0977|consen 72 INLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLS 151 (546)
T ss_pred HHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhh
Q ss_pred HhhhhhhhHhHHHHHHHHHHHhhc
Q 021664 206 EIEGKQDITTLGVKKLCDRARELE 229 (309)
Q Consensus 206 ~ie~kQd~Tn~GV~~LC~f~~~~~ 229 (309)
.++++.+..+.-+.+|-+=...++
T Consensus 152 ~leAe~~~~krr~~~le~e~~~Lk 175 (546)
T KOG0977|consen 152 ELEAEINTLKRRIKALEDELKRLK 175 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
No 497
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=31.29 E-value=1.4e+02 Score=22.73 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHH--HHHHhHhhhhhhHH
Q 021664 129 ACNSVARQLEDVYSSISAAQR--QLSSKITSVDRDVN 163 (309)
Q Consensus 129 Av~sv~KqLeqVs~sL~~aKr--hLsqRI~~vD~kld 163 (309)
|+=+++..+.+........+. ++.+||+.+..+||
T Consensus 53 aaLnla~e~~~~~~~~~~~~~~~~l~~~i~~L~~~le 89 (89)
T PF05164_consen 53 AALNLADELLKLKRELDELEELERLEERIEELNERLE 89 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhC
No 498
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=31.22 E-value=2.9e+02 Score=22.45 Aligned_cols=89 Identities=16% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhh---hhhhHhHHH
Q 021664 142 SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG---KQDITTLGV 218 (309)
Q Consensus 142 ~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~---kQd~Tn~GV 218 (309)
..+.++-+.+..-++..-..++-...+-+.+..+..++.+.+..+...++.+++....|+..+..|.. .-.-=-.=|
T Consensus 3 ~~f~~~~~~v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v 82 (99)
T PF10046_consen 3 RMFSKVSKYVESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTV 82 (99)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhcc
Q 021664 219 KKLCDRARELEN 230 (309)
Q Consensus 219 ~~LC~f~~~~~~ 230 (309)
+.|=+|+..+|.
T Consensus 83 ~~LD~ysk~LE~ 94 (99)
T PF10046_consen 83 YELDEYSKELES 94 (99)
T ss_pred HHHHHHHHHHHH
No 499
>PHA03332 membrane glycoprotein; Provisional
Probab=31.08 E-value=6.8e+02 Score=29.50 Aligned_cols=119 Identities=8% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHH-HHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHH
Q 021664 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI-VEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (309)
Q Consensus 126 ms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~-~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki 204 (309)
++|++..++..|.+.+..|..-=++...||+.|.++++.. .+....+..=-+.++++.....+.|+..+....=- ..|
T Consensus 910 lsDai~klGnti~kisatl~~nI~avNgRIs~Led~VN~r~~~v~~~intLA~ql~~~~~~~N~~ie~~~aaalyY-QQl 988 (1328)
T PHA03332 910 TSDVITKLGDTIAKISATLDNNIRAVNGRVSDLEDQVNLRFLAVATNFNTLATQLKELGTTTNERIEEVMAAALYY-QQL 988 (1328)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH-HHH
Q ss_pred HHhhhhhhhHhHHHHHHHHHHHhhccCCCccceeccccCcc
Q 021664 205 IEIEGKQDITTLGVKKLCDRARELENGRPTELVQASRYTLS 245 (309)
Q Consensus 205 ~~ie~kQd~Tn~GV~~LC~f~~~~~~~~~~~~~Q~~~~~s~ 245 (309)
.++...--..+.-+.+-.+....-=++..+.++|+-|-+-|
T Consensus 989 nsltnqv~~saskL~~qv~myrTCl~Sl~aG~L~GCP~~~p 1029 (1328)
T PHA03332 989 NSLTNQVTQSASKLGYQVGMYRTCLKSLLAGTLAGCPTDAP 1029 (1328)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhcccccCCCCCCh
No 500
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=31.08 E-value=3e+02 Score=25.21 Aligned_cols=81 Identities=15% Similarity=0.176 Sum_probs=0.0
Q ss_pred cchhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHH-HHHHHHHhhhchhhhhhhHHHHHH
Q 021664 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQA-TQEEVTILRGRSKLIGDEFQSVRD 195 (309)
Q Consensus 117 DlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~-i~~eV~~v~~dl~~ig~Dv~~v~~ 195 (309)
|.|---||.|+++...+++.+..+++.=..+ -|++-+.++.+--+...++... -.+|...+.+.|...-..+.+|+.
T Consensus 36 e~lv~~r~ela~~~~~f~~s~~~L~~~E~~~--~Ls~al~~la~~~~ki~~~~~~qa~~d~~~l~e~L~eY~r~i~svk~ 113 (224)
T cd07623 36 ESLVNHRKELALNTGSFAKSAAMLSNCEEHT--SLSRALSQLAEVEEKIEQLHGEQADTDFYILAELLKDYIGLIGAIKD 113 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 021664 196 IVQT 199 (309)
Q Consensus 196 ~V~~ 199 (309)
++..
T Consensus 114 ~f~~ 117 (224)
T cd07623 114 VFHE 117 (224)
T ss_pred HHHH
Done!