Query 021664
Match_columns 309
No_of_seqs 62 out of 64
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 07:28:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021664.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021664hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ba2_A D12_ORF131, hypothetica 94.5 0.085 2.9E-06 41.9 6.4 77 120-208 8-84 (85)
2 2no2_A HIP-I, huntingtin-inter 93.6 0.87 3E-05 37.0 10.9 80 131-210 11-97 (107)
3 3mq9_A Bone marrow stromal ant 90.0 3.7 0.00013 38.9 12.5 77 125-202 356-432 (471)
4 1m1j_B Fibrinogen beta chain; 89.4 2.5 8.6E-05 42.1 11.1 96 115-210 87-190 (464)
5 3g67_A Methyl-accepting chemot 89.1 6 0.00021 35.2 12.4 39 126-164 5-43 (213)
6 3g67_A Methyl-accepting chemot 89.0 3.8 0.00013 36.5 11.1 65 133-197 5-69 (213)
7 1deq_A Fibrinogen (alpha chain 88.2 3.6 0.00012 40.4 11.0 93 116-208 55-154 (390)
8 3oja_A Leucine-rich immune mol 88.0 2.6 8.9E-05 40.1 9.9 66 158-223 412-477 (487)
9 3ghg_A Fibrinogen alpha chain; 87.5 4.7 0.00016 41.1 11.7 95 116-210 52-153 (562)
10 3tnu_B Keratin, type II cytosk 87.3 1.3 4.5E-05 36.2 6.4 53 152-207 42-94 (129)
11 3trt_A Vimentin; cytoskeleton, 86.6 5.1 0.00017 29.7 8.8 70 125-194 6-76 (77)
12 3na7_A HP0958; flagellar bioge 86.3 3.9 0.00013 36.7 9.5 27 184-210 93-119 (256)
13 2qyw_A Vesicle transport throu 85.6 1.6 5.6E-05 34.6 6.0 56 122-180 20-76 (102)
14 3onj_A T-snare VTI1; helix, HA 85.6 2.6 8.7E-05 33.2 7.0 53 124-179 8-60 (97)
15 3tnu_A Keratin, type I cytoske 85.4 1.3 4.6E-05 36.4 5.6 69 136-207 25-96 (131)
16 3okq_A BUD site selection prot 85.0 12 0.00042 32.0 11.4 77 143-219 11-107 (141)
17 2akf_A Coronin-1A; coiled coil 84.0 1 3.4E-05 29.6 3.3 29 183-211 1-29 (32)
18 1vcs_A Vesicle transport throu 83.9 1.3 4.3E-05 35.3 4.6 62 116-180 4-65 (102)
19 3oja_B Anopheles plasmodium-re 83.6 8.3 0.00028 37.2 11.1 37 123-159 458-494 (597)
20 2yo3_A General control protein 83.4 2.1 7.3E-05 40.1 6.5 58 137-194 200-257 (268)
21 4dnd_A Syntaxin-10, SYN10; str 83.2 2.9 0.0001 34.8 6.7 59 122-182 68-127 (130)
22 3gwk_C SAG1039, putative uncha 83.2 12 0.00041 27.8 10.4 75 132-206 15-94 (98)
23 1c1g_A Tropomyosin; contractIl 82.7 19 0.00064 29.6 13.9 35 173-207 68-102 (284)
24 3mq9_A Bone marrow stromal ant 82.1 13 0.00045 35.1 11.6 44 124-167 369-418 (471)
25 3zx6_A HAMP, methyl-accepting 82.0 31 0.0011 31.8 14.2 15 216-230 283-297 (341)
26 3zx6_A HAMP, methyl-accepting 81.1 34 0.0012 31.5 14.1 9 61-69 11-19 (341)
27 2jee_A YIIU; FTSZ, septum, coi 80.4 11 0.00039 29.4 8.7 68 155-222 8-75 (81)
28 3hnw_A Uncharacterized protein 79.9 17 0.00058 30.4 10.3 64 150-213 72-135 (138)
29 3a7p_A Autophagy protein 16; c 79.8 22 0.00076 30.7 11.2 70 129-213 59-129 (152)
30 1m1j_A Fibrinogen alpha subuni 79.6 15 0.00051 37.0 11.3 99 112-210 49-154 (491)
31 1kmi_Z CHEZ, chemotaxis protei 79.6 11 0.00039 33.5 9.7 116 124-239 26-170 (214)
32 2xzr_A Immunoglobulin-binding 79.6 22 0.00074 29.2 10.4 70 126-195 32-104 (114)
33 1deq_A Fibrinogen (alpha chain 79.6 14 0.00047 36.3 10.9 82 140-221 54-139 (390)
34 3u59_A Tropomyosin beta chain; 78.1 23 0.00078 27.8 11.9 86 144-229 14-99 (101)
35 4abx_A DNA repair protein RECN 77.9 5.8 0.0002 33.6 7.0 92 114-209 67-164 (175)
36 1m1j_C Fibrinogen gamma chain; 77.5 18 0.0006 35.5 11.1 43 165-207 82-124 (409)
37 1gl2_D Syntaxin 8, vesicle tra 77.5 7.1 0.00024 28.2 6.4 49 154-216 10-58 (65)
38 1m1j_B Fibrinogen beta chain; 76.7 25 0.00084 35.1 12.0 42 141-182 88-129 (464)
39 3u59_A Tropomyosin beta chain; 76.6 25 0.00086 27.5 10.4 68 134-201 32-99 (101)
40 3c9i_A Tail needle protein GP2 76.6 7.4 0.00025 35.6 7.5 59 152-210 83-141 (242)
41 1fxk_C Protein (prefoldin); ar 76.3 4.7 0.00016 32.5 5.7 40 145-184 87-126 (133)
42 2l5g_B Putative uncharacterize 75.9 2.1 7.3E-05 30.0 3.0 30 147-176 3-32 (42)
43 1ic2_A Tropomyosin alpha chain 75.7 18 0.00061 27.3 8.5 60 149-208 16-75 (81)
44 3u1c_A Tropomyosin alpha-1 cha 75.0 29 0.00098 27.4 10.6 80 147-226 17-96 (101)
45 3m0a_A TNF receptor-associated 75.0 15 0.00052 26.4 7.6 58 151-208 3-60 (66)
46 4ioe_A Secreted protein ESXB; 74.8 22 0.00075 25.9 9.0 30 129-158 13-42 (93)
47 4ioe_A Secreted protein ESXB; 74.4 22 0.00077 25.8 10.1 57 135-191 12-73 (93)
48 3zbh_A ESXA; unknown function, 74.2 23 0.00078 25.9 10.9 68 136-203 13-92 (99)
49 1sfc_D Protein (SNAP-25B), pro 74.1 13 0.00045 28.5 7.5 50 172-221 34-83 (87)
50 1n7s_D SNAP-25A; neuronal snar 73.7 19 0.00066 25.9 7.9 54 152-219 9-62 (66)
51 3htk_A Structural maintenance 73.7 10 0.00035 26.7 6.3 43 158-200 10-52 (60)
52 3ghg_A Fibrinogen alpha chain; 73.1 21 0.00071 36.5 10.5 73 140-212 51-127 (562)
53 1l8d_A DNA double-strand break 73.0 30 0.001 26.7 9.9 35 130-164 5-42 (112)
54 1ic2_A Tropomyosin alpha chain 72.7 28 0.00096 26.2 9.5 65 151-215 4-68 (81)
55 2nps_D Syntaxin-6; vesicle fus 72.5 14 0.00046 28.0 7.1 41 183-223 35-75 (82)
56 2nps_D Syntaxin-6; vesicle fus 71.8 7.9 0.00027 29.3 5.6 57 153-209 19-75 (82)
57 1sfc_D Protein (SNAP-25B), pro 70.3 25 0.00085 26.9 8.3 59 150-208 26-84 (87)
58 1gl2_D Syntaxin 8, vesicle tra 69.8 9.5 0.00032 27.5 5.5 48 134-185 8-55 (65)
59 1m1j_C Fibrinogen gamma chain; 69.6 38 0.0013 33.1 11.2 49 182-230 85-133 (409)
60 2zdi_C Prefoldin subunit alpha 69.6 7.2 0.00024 32.3 5.4 40 145-184 97-136 (151)
61 2vs0_A Virulence factor ESXA; 68.8 31 0.001 25.1 8.3 65 137-201 11-87 (97)
62 3ghg_C Fibrinogen gamma chain; 67.4 34 0.0012 33.7 10.4 92 116-207 26-124 (411)
63 3swy_A Cyclic nucleotide-gated 67.1 11 0.00037 26.7 5.0 36 126-161 10-45 (46)
64 3na7_A HP0958; flagellar bioge 66.9 69 0.0024 28.4 12.7 57 152-208 103-163 (256)
65 3htk_A Structural maintenance 66.3 24 0.00082 24.7 6.9 47 136-182 9-55 (60)
66 3zbh_A ESXA; unknown function, 65.4 37 0.0013 24.7 10.1 27 154-180 57-83 (99)
67 3swf_A CGMP-gated cation chann 64.6 19 0.00066 27.8 6.4 39 126-164 12-50 (74)
68 1jth_B Syntaxin 1A; coiled-coi 64.6 35 0.0012 25.3 7.8 59 173-231 9-71 (77)
69 3efg_A Protein SLYX homolog; x 63.8 11 0.00038 28.9 5.0 54 149-209 10-63 (78)
70 2dfs_A Myosin-5A; myosin-V, in 63.2 47 0.0016 36.0 11.4 15 153-167 984-998 (1080)
71 3cvf_A Homer-3, homer protein 62.9 30 0.001 26.9 7.3 45 128-176 6-50 (79)
72 2xdj_A Uncharacterized protein 62.8 33 0.0011 26.6 7.6 27 170-196 30-56 (83)
73 2v71_A Nuclear distribution pr 61.9 86 0.0029 27.8 13.4 84 137-220 47-134 (189)
74 2nps_B Syntaxin 13, vesicle-as 61.8 33 0.0011 25.0 7.2 56 174-229 6-65 (71)
75 3fav_B ESAT-6, 6 kDa early sec 61.6 27 0.00091 25.6 6.7 64 137-200 10-85 (94)
76 3gwk_C SAG1039, putative uncha 61.6 46 0.0016 24.5 9.6 32 135-166 11-42 (98)
77 2jee_A YIIU; FTSZ, septum, coi 61.5 56 0.0019 25.5 8.7 46 161-206 28-80 (81)
78 3ci9_A Heat shock factor-bindi 61.3 18 0.00061 25.7 5.3 41 125-165 3-43 (48)
79 4i0x_B ESAT-6-like protein MAB 60.7 53 0.0018 24.9 8.8 34 135-168 14-47 (103)
80 1n7s_D SNAP-25A; neuronal snar 60.6 38 0.0013 24.3 7.2 48 133-184 8-55 (66)
81 3ghg_C Fibrinogen gamma chain; 60.3 1E+02 0.0036 30.2 12.4 92 139-230 24-133 (411)
82 1wle_A Seryl-tRNA synthetase; 60.0 33 0.0011 34.2 8.9 29 143-174 74-102 (501)
83 3u1c_A Tropomyosin alpha-1 cha 59.9 61 0.0021 25.4 11.8 58 144-201 42-99 (101)
84 3cve_A Homer protein homolog 1 59.6 47 0.0016 25.4 7.7 46 149-194 17-62 (72)
85 3fav_A ESAT-6-like protein ESX 59.6 39 0.0013 25.3 7.4 66 137-202 12-89 (101)
86 3zcc_A HAMP, osmolarity sensor 59.6 44 0.0015 23.6 7.9 24 166-189 65-88 (114)
87 1m1j_A Fibrinogen alpha subuni 59.5 42 0.0014 33.8 9.5 49 144-192 109-157 (491)
88 2w83_C C-JUN-amino-terminal ki 59.0 61 0.0021 25.2 8.3 65 124-209 5-72 (77)
89 2w83_C C-JUN-amino-terminal ki 58.1 64 0.0022 25.1 9.0 18 122-139 24-41 (77)
90 3s84_A Apolipoprotein A-IV; fo 57.6 52 0.0018 30.1 9.2 27 165-191 207-233 (273)
91 2v66_B Nuclear distribution pr 57.4 78 0.0027 25.9 11.1 69 124-196 6-74 (111)
92 2b9c_A Striated-muscle alpha t 56.9 60 0.002 27.4 8.8 68 153-220 52-119 (147)
93 3kkj_A Amine oxidase, flavin-c 56.6 2.3 7.9E-05 32.9 0.0 14 9-22 5-18 (336)
94 3cvf_A Homer-3, homer protein 56.3 54 0.0019 25.4 7.7 52 123-174 22-73 (79)
95 1sfc_B Protein (syntaxin 1A), 54.8 66 0.0022 24.2 8.3 56 171-226 18-77 (83)
96 3m0d_C TNF receptor-associated 54.4 50 0.0017 24.1 7.0 37 172-208 25-61 (65)
97 4h22_A Leucine-rich repeat fli 54.1 53 0.0018 26.8 7.6 59 147-205 24-82 (103)
98 1qu7_A Methyl-accepting chemot 53.9 1.1E+02 0.0039 26.7 12.3 13 63-75 73-85 (227)
99 3a7p_A Autophagy protein 16; c 53.8 92 0.0032 26.9 9.5 21 190-210 98-118 (152)
100 1i84_S Smooth muscle myosin he 53.6 27 0.00092 37.7 7.6 24 24-47 652-675 (1184)
101 3o0z_A RHO-associated protein 53.4 1.2E+02 0.0039 26.6 11.6 81 124-208 58-138 (168)
102 2zqm_A Prefoldin beta subunit 53.3 27 0.00091 27.0 5.7 15 61-75 25-39 (117)
103 3gp4_A Transcriptional regulat 53.0 70 0.0024 26.1 8.5 21 188-208 95-115 (142)
104 3fx7_A Putative uncharacterize 53.0 86 0.0029 25.0 8.9 73 130-202 11-84 (94)
105 3nmd_A CGMP dependent protein 52.5 42 0.0014 25.7 6.5 50 130-180 15-67 (72)
106 2v66_B Nuclear distribution pr 52.1 96 0.0033 25.3 9.7 74 148-221 5-82 (111)
107 4dnd_A Syntaxin-10, SYN10; str 51.2 1E+02 0.0035 25.4 10.2 94 109-209 19-126 (130)
108 3v86_A De novo design helix; c 50.9 8.7 0.0003 24.2 1.9 23 171-193 4-26 (27)
109 1l4a_D S-SNAP25 fusion protein 50.5 36 0.0012 26.2 6.0 38 184-221 47-84 (87)
110 3ol1_A Vimentin; structural ge 50.2 99 0.0034 24.9 10.8 72 142-213 30-101 (119)
111 1ses_A Seryl-tRNA synthetase; 49.6 50 0.0017 31.8 8.1 65 144-221 33-97 (421)
112 3hnw_A Uncharacterized protein 49.3 90 0.0031 26.0 8.6 52 155-206 84-135 (138)
113 3oja_A Leucine-rich immune mol 49.1 20 0.0007 33.9 5.2 58 153-210 414-471 (487)
114 2c5k_T Syntaxin TLG1, T-snare 48.4 60 0.002 25.5 7.0 25 186-210 66-90 (95)
115 3qne_A Seryl-tRNA synthetase, 48.3 32 0.0011 34.4 6.6 63 144-210 38-100 (485)
116 2q6q_A Spindle POLE BODY compo 47.6 71 0.0024 24.5 7.0 57 148-204 5-61 (74)
117 3vkg_A Dynein heavy chain, cyt 47.2 75 0.0026 38.7 10.4 31 158-188 2019-2049(3245)
118 1l4a_D S-SNAP25 fusion protein 47.1 63 0.0021 24.8 6.8 55 151-205 28-82 (87)
119 3vkg_A Dynein heavy chain, cyt 47.1 1E+02 0.0034 37.7 11.4 98 124-221 2010-2117(3245)
120 1jcd_A Major outer membrane li 46.8 40 0.0014 24.2 5.2 12 174-185 25-36 (52)
121 2nrj_A HBL B protein; enteroto 46.2 1.2E+02 0.0041 28.5 10.0 35 147-181 117-151 (346)
122 3gp4_A Transcriptional regulat 45.9 71 0.0024 26.1 7.4 29 148-176 83-111 (142)
123 1x79_B RAB GTPase binding effe 45.8 1.2E+02 0.0042 24.8 9.0 65 136-200 7-71 (112)
124 3haj_A Human pacsin2 F-BAR; pa 45.8 1.9E+02 0.0064 27.9 11.5 38 120-157 128-165 (486)
125 3b5n_D Protein transport prote 45.6 79 0.0027 23.1 6.9 32 185-216 28-59 (64)
126 3hd7_A Vesicle-associated memb 45.2 87 0.003 24.1 7.4 23 136-158 6-28 (91)
127 1q08_A Zn(II)-responsive regul 45.0 62 0.0021 24.0 6.4 61 150-210 7-75 (99)
128 1n7s_B Syntaxin 1A; neuronal s 44.9 85 0.0029 22.6 7.3 50 173-222 11-64 (68)
129 1fxk_A Prefoldin; archaeal pro 44.8 43 0.0015 25.4 5.6 15 61-75 20-34 (107)
130 1sum_B Phosphate transport sys 44.2 1.5E+02 0.0051 25.2 9.5 79 123-201 13-108 (235)
131 2dq0_A Seryl-tRNA synthetase; 44.1 50 0.0017 32.3 7.2 62 144-209 36-97 (455)
132 3mts_A Histone-lysine N-methyl 43.9 15 0.00053 26.8 2.7 22 106-127 18-39 (64)
133 2xdj_A Uncharacterized protein 43.6 77 0.0026 24.5 6.8 54 152-212 5-58 (83)
134 2c5k_T Syntaxin TLG1, T-snare 43.3 41 0.0014 26.4 5.3 54 121-181 36-89 (95)
135 2pnv_A Small conductance calci 43.0 42 0.0014 23.3 4.7 30 139-168 9-38 (43)
136 2j69_A Bacterial dynamin-like 42.7 1.7E+02 0.006 29.6 11.2 79 126-210 594-684 (695)
137 1gl2_B Syntaxin 7; membrane pr 42.4 63 0.0022 23.2 5.9 43 174-216 9-51 (65)
138 3ghg_B Fibrinogen beta chain; 42.0 1.3E+02 0.0046 30.0 9.9 35 115-149 82-116 (461)
139 3b5n_B Protein SSO1; snare com 40.4 1E+02 0.0035 22.3 8.0 52 173-224 9-64 (69)
140 2i0m_A Phosphate transport sys 40.2 1.1E+02 0.0039 25.3 8.0 45 123-167 13-57 (216)
141 2d4y_A HAP1, flagellar HOOK-as 39.8 1.9E+02 0.0065 27.7 10.4 59 121-179 64-122 (463)
142 1wt6_A Myotonin-protein kinase 39.6 1.1E+02 0.0038 23.9 7.1 21 171-191 28-48 (81)
143 2dq3_A Seryl-tRNA synthetase; 39.2 49 0.0017 31.9 6.2 63 144-210 35-97 (425)
144 2dq0_A Seryl-tRNA synthetase; 38.6 1.5E+02 0.0051 28.9 9.6 88 136-223 10-104 (455)
145 3e7k_A TRPM7 channel; coiled-c 38.5 1.2E+02 0.0039 22.3 6.9 46 127-176 8-53 (56)
146 1t3j_A Mitofusin 1; coiled coi 38.1 1E+02 0.0034 24.8 6.8 21 146-166 47-67 (96)
147 3ghg_B Fibrinogen beta chain; 38.1 2.2E+02 0.0075 28.5 10.7 11 65-75 19-29 (461)
148 1xwj_B Talin, metavinculin; ce 37.9 23 0.00079 21.8 2.5 24 122-145 2-25 (26)
149 3hd7_A Vesicle-associated memb 37.8 1.4E+02 0.0047 23.0 9.6 22 131-152 8-29 (91)
150 1fxk_A Prefoldin; archaeal pro 37.2 87 0.003 23.7 6.3 19 123-141 60-78 (107)
151 3lss_A Seryl-tRNA synthetase; 37.1 1E+02 0.0034 30.8 8.2 23 143-165 41-63 (484)
152 2zqm_A Prefoldin beta subunit 37.1 99 0.0034 23.7 6.6 18 123-140 65-82 (117)
153 3hd7_B Syntaxin-1A; membrane p 37.1 1.2E+02 0.0041 23.9 7.2 45 155-199 23-67 (109)
154 4hpq_C ATG17, KLTH0D15642P; au 36.9 2.9E+02 0.0098 27.0 11.2 16 124-139 204-219 (413)
155 2ke4_A CDC42-interacting prote 36.9 75 0.0026 25.2 6.0 60 148-209 17-76 (98)
156 4ev6_A Magnesium transport pro 36.7 1.9E+02 0.0066 26.3 9.6 38 125-162 168-206 (339)
157 3gpv_A Transcriptional regulat 36.3 80 0.0027 25.9 6.3 23 186-208 107-129 (148)
158 3f6n_A Virion-associated prote 36.0 69 0.0024 27.0 5.8 31 162-192 4-34 (129)
159 2xz3_A Maltose ABC transporter 36.0 1.6E+02 0.0056 27.5 9.2 39 183-221 381-419 (463)
160 4aj5_A SKA1, spindle and kinet 35.9 1.7E+02 0.0057 23.4 10.0 45 179-227 35-79 (91)
161 1x8y_A Lamin A/C; structural p 35.5 1.5E+02 0.005 22.6 7.3 60 139-205 14-73 (86)
162 1qu7_A Methyl-accepting chemot 35.4 2.3E+02 0.0077 24.8 11.4 14 62-75 55-68 (227)
163 4abm_A Charged multivesicular 35.3 1.5E+02 0.005 22.6 8.8 65 143-208 10-79 (79)
164 3b5n_A Synaptobrevin homolog 1 35.3 1.2E+02 0.0041 21.5 7.1 22 137-158 4-25 (61)
165 4ack_A TSSL; protein transport 35.2 1.1E+02 0.0036 27.3 7.2 65 162-227 7-71 (185)
166 1lwu_C Fibrinogen gamma chain; 35.1 59 0.002 30.8 5.9 8 197-204 42-49 (323)
167 2a01_A Apolipoprotein A-I; fou 34.5 1.9E+02 0.0065 25.6 8.9 34 157-190 92-126 (243)
168 1d7m_A Cortexillin I; coiled-c 34.5 1.7E+02 0.0058 23.6 7.6 30 126-155 2-34 (101)
169 1t72_A Phosphate transport sys 34.2 2E+02 0.0069 23.9 9.0 79 123-201 17-112 (227)
170 3tul_A Cell invasion protein S 33.9 44 0.0015 29.1 4.4 21 192-212 104-124 (158)
171 3oz2_A Digeranylgeranylglycero 33.7 8.8 0.0003 33.5 0.0 14 9-22 7-20 (397)
172 3ci9_A Heat shock factor-bindi 33.7 73 0.0025 22.5 4.8 38 125-162 6-47 (48)
173 1fzc_A Fibrin; blood coagulati 33.3 40 0.0014 26.7 3.7 28 149-176 3-30 (87)
174 2qyw_A Vesicle transport throu 32.7 1.4E+02 0.0049 23.3 7.0 61 134-194 14-76 (102)
175 4g2k_A General control protein 32.6 97 0.0033 26.0 6.1 32 173-204 20-51 (125)
176 2p22_A Suppressor protein STP2 32.5 96 0.0033 27.1 6.4 51 117-167 34-84 (174)
177 2ocy_A RAB guanine nucleotide 32.5 1.7E+02 0.0058 25.2 7.9 65 124-188 75-150 (154)
178 3h6p_C ESAT-6-like protein ESX 32.5 44 0.0015 24.8 3.8 38 166-203 52-89 (96)
179 1go4_E MAD1 (mitotic arrest de 32.5 38 0.0013 27.3 3.6 38 172-209 10-47 (100)
180 3trt_A Vimentin; cytoskeleton, 32.5 1.4E+02 0.0049 21.6 8.7 37 172-208 40-76 (77)
181 3edv_A Spectrin beta chain, br 32.4 2.1E+02 0.0071 24.9 8.8 57 148-205 187-243 (323)
182 1avo_B 11S regulator; proteaso 31.6 2.2E+02 0.0076 23.8 8.4 83 123-205 5-87 (140)
183 3mov_A Lamin-B1; LMNB1, B-type 31.5 1.9E+02 0.0064 22.7 7.4 69 130-205 14-82 (95)
184 2wrg_I Hemagglutinin HA2 chain 31.4 33 0.0011 31.2 3.3 55 121-175 36-97 (222)
185 1mqm_B Hemagglutinin HA2 chain 31.3 13 0.00045 33.7 0.7 55 121-175 36-97 (221)
186 1xwm_A PHOU, phosphate uptake 31.3 2.3E+02 0.0077 23.5 9.3 44 123-166 13-56 (217)
187 2iub_A CORA, divalent cation t 31.2 3.1E+02 0.011 25.2 10.1 16 129-144 196-211 (363)
188 2bsg_A Fibritin; viral protein 31.2 50 0.0017 33.3 4.9 110 124-236 43-162 (487)
189 4dyl_A Tyrosine-protein kinase 31.2 79 0.0027 29.9 6.1 64 147-210 303-395 (406)
190 3u06_A Protein claret segregat 31.1 75 0.0026 30.7 6.1 32 144-175 8-39 (412)
191 3swk_A Vimentin; cytoskeleton, 30.9 1.8E+02 0.0061 22.3 10.4 67 145-211 13-79 (86)
192 3plt_A Sphingolipid long chain 30.9 3.1E+02 0.011 25.0 11.9 84 127-214 61-150 (234)
193 2v71_A Nuclear distribution pr 30.6 2.8E+02 0.0096 24.4 14.4 80 147-226 43-133 (189)
194 2rft_B Influenza B hemagglutin 30.6 22 0.00076 31.3 2.0 56 121-176 36-98 (176)
195 2dfs_A Myosin-5A; myosin-V, in 30.6 4E+02 0.014 28.8 12.1 83 126-208 958-1050(1080)
196 3qne_A Seryl-tRNA synthetase, 30.2 2.4E+02 0.0083 28.0 9.7 88 136-223 14-106 (485)
197 4hb9_A Similarities with proba 29.9 11 0.00038 33.2 0.0 13 9-21 4-16 (412)
198 1gk4_A Vimentin; intermediate 29.9 1.8E+02 0.0061 21.9 8.8 41 165-205 31-71 (84)
199 3edv_A Spectrin beta chain, br 29.6 2.8E+02 0.0096 24.1 11.3 14 61-74 44-57 (323)
200 3l39_A Putative PHOU-like phos 29.4 2.6E+02 0.0091 24.1 8.8 77 132-208 98-178 (227)
201 1ses_A Seryl-tRNA synthetase; 29.4 2.5E+02 0.0086 26.9 9.4 22 136-157 39-60 (421)
202 3c9i_A Tail needle protein GP2 29.2 2E+02 0.0067 26.4 8.0 48 161-208 99-146 (242)
203 3s84_A Apolipoprotein A-IV; fo 29.1 3.3E+02 0.011 24.7 11.0 46 145-190 102-148 (273)
204 1jsd_B Haemagglutinin (HA2 cha 28.9 48 0.0017 29.1 3.9 56 121-176 36-98 (176)
205 1aq5_A Matrilin-1, CMP, cartil 28.8 1.1E+02 0.0036 21.8 4.9 10 151-160 35-44 (47)
206 3r2p_A Apolipoprotein A-I; amp 28.1 2.7E+02 0.0092 23.4 10.3 67 125-191 79-150 (185)
207 2lw1_A ABC transporter ATP-bin 28.0 1.9E+02 0.0066 21.8 7.5 27 152-178 21-47 (89)
208 3cve_A Homer protein homolog 1 27.8 2E+02 0.0069 21.8 8.1 55 151-208 5-59 (72)
209 1wyy_A E2 glycoprotein; membra 27.6 36 0.0012 29.4 2.8 27 178-204 113-139 (149)
210 2l3l_A Tubulin-specific chaper 27.6 2.4E+02 0.0081 22.6 9.6 73 135-209 31-105 (111)
211 1xsv_A Hypothetical UPF0122 pr 27.6 2.1E+02 0.0073 22.1 8.0 51 125-180 43-93 (113)
212 2b9b_A Fusion glycoprotein F0; 27.6 1.4E+02 0.0048 30.2 7.4 49 132-180 427-478 (497)
213 2vkl_A RV0948C/MT0975; helical 27.5 1.7E+02 0.0057 22.4 6.4 53 149-201 15-67 (90)
214 2h1e_A Chromo domain protein 1 27.5 45 0.0015 28.7 3.5 27 105-132 48-74 (177)
215 3hh0_A Transcriptional regulat 27.5 1.8E+02 0.0061 23.7 7.0 38 185-222 91-128 (146)
216 1l8d_A DNA double-strand break 27.5 2.1E+02 0.007 21.9 8.9 36 168-203 65-100 (112)
217 1wt6_A Myotonin-protein kinase 27.4 2.2E+02 0.0076 22.2 7.9 27 122-148 11-37 (81)
218 3iyk_A VP5; icosahedral virus; 27.1 1.6E+02 0.0055 29.9 7.7 54 112-169 81-134 (526)
219 3q0x_A Centriole protein; cent 27.0 1.4E+02 0.0049 27.0 6.8 24 123-146 166-189 (228)
220 1urq_A M-tomosyn isoform; tran 26.8 1.9E+02 0.0063 21.1 6.8 30 130-159 6-35 (63)
221 3he5_B Synzip2; heterodimeric 26.7 1.1E+02 0.0036 21.8 4.6 34 176-209 12-45 (52)
222 1lrz_A FEMA, factor essential 26.7 1E+02 0.0035 29.0 6.0 35 118-152 237-271 (426)
223 4abx_A DNA repair protein RECN 26.6 1.9E+02 0.0066 24.1 7.2 142 37-194 16-163 (175)
224 3i00_A HIP-I, huntingtin-inter 26.5 89 0.0031 25.6 4.9 44 163-209 11-54 (120)
225 3rkg_A Magnesium transporter M 26.4 2.1E+02 0.0073 26.1 7.9 39 126-166 132-170 (261)
226 1gl2_C VTI1B, vesicle transpor 26.3 1.8E+02 0.0063 20.9 6.1 48 154-201 3-50 (65)
227 3m91_A Proteasome-associated A 26.3 1.2E+02 0.0041 21.6 4.9 32 151-182 14-45 (51)
228 4i0x_B ESAT-6-like protein MAB 26.3 2.1E+02 0.0071 21.5 8.0 29 121-149 11-39 (103)
229 3i2w_A Syndapin, LD46328P; EFC 26.1 3.3E+02 0.011 23.7 9.7 39 121-159 114-152 (290)
230 3kpe_A Fusion glycoprotein F0; 26.0 1.4E+02 0.0049 21.4 5.3 41 158-198 2-42 (51)
231 1mqs_A SLY1 protein, SLY1P; SM 26.0 2.6E+02 0.0091 28.1 9.3 81 116-197 329-444 (671)
232 1tqg_A Chemotaxis protein CHEA 25.8 1.8E+02 0.0061 21.7 6.3 40 167-208 36-75 (105)
233 2r2v_A GCN4 leucine zipper; co 25.7 78 0.0027 21.2 3.5 27 154-180 2-28 (34)
234 3zrx_A AF1503 protein, osmolar 25.6 1.7E+02 0.0058 20.3 9.2 21 166-186 65-85 (115)
235 2fxo_A Myosin heavy chain, car 25.3 2.7E+02 0.0091 22.4 9.1 66 128-193 58-123 (129)
236 1wle_A Seryl-tRNA synthetase; 25.2 4.2E+02 0.014 26.3 10.4 33 189-221 117-149 (501)
237 3m3w_A Pacsin3, protein kinase 25.2 2.9E+02 0.01 24.9 8.7 34 121-154 127-160 (320)
238 1gs9_A Apolipoprotein E, APOE4 25.2 91 0.0031 26.5 4.9 11 171-181 103-113 (165)
239 2z5i_A TM, general control pro 25.1 1.2E+02 0.0041 21.4 4.7 31 149-179 15-45 (52)
240 3p8q_A GP5, head protein; viru 25.1 15 0.00052 34.5 0.0 64 138-208 5-68 (385)
241 3l4f_A RHO guanine nucleotide 24.9 1.3E+02 0.0045 22.4 5.1 43 170-212 10-52 (61)
242 3abi_A Putative uncharacterize 24.8 14 0.00048 33.9 -0.3 16 7-23 18-33 (365)
243 2nrj_A HBL B protein; enteroto 24.8 2.5E+02 0.0087 26.3 8.3 15 61-75 62-76 (346)
244 1lwu_A Fibrinogen alpha-1 chai 24.8 88 0.003 26.1 4.5 28 149-176 25-52 (119)
245 2bni_A General control protein 24.5 77 0.0026 21.2 3.3 28 154-181 2-29 (34)
246 4gip_D Fusion glycoprotein F1; 24.5 53 0.0018 32.3 3.6 53 132-195 346-398 (409)
247 2efr_A General control protein 24.4 3.3E+02 0.011 23.2 10.7 76 125-200 74-152 (155)
248 3c3f_A Alpha/beta peptide with 24.2 87 0.003 20.9 3.5 28 154-181 2-29 (34)
249 2kvm_A Chromobox protein homol 23.8 34 0.0012 25.3 1.7 22 107-128 32-53 (74)
250 1ez3_A Syntaxin-1A; three heli 23.8 1.2E+02 0.0041 23.5 5.1 16 130-145 14-29 (127)
251 3t37_A Probable dehydrogenase; 23.7 17 0.00057 34.2 0.0 15 9-23 20-34 (526)
252 3kqg_A Langerin, C-type lectin 23.4 1E+02 0.0034 24.8 4.7 19 150-168 3-21 (182)
253 2l7b_A Apolipoprotein E, APO-E 23.2 1.4E+02 0.0047 27.9 6.1 65 125-189 104-173 (307)
254 3c98_B Syntaxin-1A; protein co 23.2 3.3E+02 0.011 22.8 8.3 21 128-148 47-67 (279)
255 1h2v_C 80 kDa nuclear CAP bind 22.9 69 0.0024 33.5 4.4 43 112-154 602-650 (771)
256 2zvf_A Alanyl-tRNA synthetase; 22.9 1.2E+02 0.0039 24.8 5.0 53 187-241 81-149 (171)
257 3ku3_B Hemagglutinin HA2 chain 22.8 55 0.0019 28.8 3.1 58 119-176 34-98 (174)
258 3hd7_B Syntaxin-1A; membrane p 22.8 2.8E+02 0.0095 21.8 8.9 52 174-225 14-76 (109)
259 3qao_A LMO0526 protein, MERR-l 22.8 73 0.0025 28.4 4.0 24 151-174 81-104 (249)
260 3nmd_A CGMP dependent protein 22.7 88 0.003 23.9 3.8 44 151-194 24-67 (72)
261 3efg_A Protein SLYX homolog; x 22.7 1.4E+02 0.0048 22.6 5.0 32 177-208 17-48 (78)
262 2d9u_A Chromobox protein homol 22.5 25 0.00084 26.2 0.7 25 103-128 26-50 (74)
263 3ni0_A Bone marrow stromal ant 22.5 3.1E+02 0.011 22.2 9.1 59 130-188 16-81 (99)
264 2xz3_A Maltose ABC transporter 22.5 1E+02 0.0036 28.8 5.2 54 168-226 380-433 (463)
265 3m5g_B Hemagglutinin; influenz 22.3 28 0.00097 30.8 1.2 61 119-179 34-101 (182)
266 3uux_B Mitochondrial division 22.3 4.6E+02 0.016 24.1 9.8 67 124-194 152-218 (242)
267 1nfn_A Apolipoprotein E3; lipi 22.3 2.6E+02 0.0088 24.1 7.3 25 166-190 98-122 (191)
268 1yvv_A Amine oxidase, flavin-c 22.2 19 0.00064 31.1 0.0 14 9-22 5-18 (336)
269 2ieq_A S glycoprotein, spike g 22.1 2.5E+02 0.0086 23.0 6.7 104 128-231 1-105 (109)
270 1tr2_A Vinculin isoform 1; act 22.1 4.2E+02 0.014 28.5 10.3 15 61-75 576-590 (1066)
271 2yo3_A General control protein 22.0 3.3E+02 0.011 25.4 8.3 65 117-181 194-258 (268)
272 3m9b_A Proteasome-associated A 21.8 94 0.0032 28.8 4.6 32 150-181 58-89 (251)
273 3lay_A Zinc resistance-associa 21.6 3.2E+02 0.011 23.5 7.8 7 212-218 139-145 (175)
274 4f23_A Hemagglutinin, H16; sia 21.6 58 0.002 33.0 3.3 48 119-166 368-422 (515)
275 2xv5_A Lamin-A/C; structural p 21.5 2.6E+02 0.0089 21.0 6.3 47 158-204 3-49 (74)
276 2fyz_B Fusion protein, fusion 21.5 88 0.003 22.2 3.4 22 132-153 11-32 (48)
277 1u00_A HSC66, chaperone protei 21.4 4E+02 0.014 23.0 9.2 67 142-210 139-210 (227)
278 2olt_A Hypothetical protein; s 21.3 3.7E+02 0.013 22.6 9.9 17 193-209 162-178 (227)
279 1r8e_A Multidrug-efflux transp 21.2 1.4E+02 0.005 25.6 5.5 32 146-177 79-110 (278)
280 3abh_A Pacsin2, protein kinase 21.2 4.2E+02 0.014 23.3 11.0 33 124-156 139-171 (312)
281 3mq7_A Bone marrow stromal ant 21.0 3.6E+02 0.012 22.4 11.0 64 136-209 33-99 (121)
282 3lwe_A M-phase phosphoprotein 21.0 28 0.00095 24.9 0.7 39 106-148 22-60 (62)
283 4gde_A UDP-galactopyranose mut 21.0 27 0.00092 32.2 0.8 14 9-22 13-26 (513)
284 4hpq_C ATG17, KLTH0D15642P; au 21.0 5.6E+02 0.019 24.9 10.1 67 140-210 27-109 (413)
285 3r4h_A Coiled coil helix CC-TE 20.9 62 0.0021 21.2 2.3 25 171-195 6-30 (34)
286 2b2y_C CHD-1, chromodomain-hel 20.9 36 0.0012 28.1 1.5 23 106-128 60-82 (115)
287 3u5c_K 40S ribosomal protein S 20.9 45 0.0015 27.2 2.0 13 214-226 69-81 (105)
288 1gd2_E Transcription factor PA 20.8 2.7E+02 0.0092 20.8 7.4 47 145-191 21-67 (70)
289 2lf0_A Uncharacterized protein 20.8 1E+02 0.0034 25.9 4.1 56 150-214 7-62 (123)
290 3gpv_A Transcriptional regulat 20.8 2.3E+02 0.0079 23.0 6.4 34 147-180 96-129 (148)
291 1dip_A Delta-sleep-inducing pe 20.7 1.9E+02 0.0063 22.5 5.3 25 186-210 13-37 (78)
292 2p4w_A Transcriptional regulat 20.7 3.6E+02 0.012 23.0 7.9 57 137-193 120-177 (202)
293 2hy6_A General control protein 20.5 1E+02 0.0036 20.6 3.3 23 155-177 3-25 (34)
294 2yfa_A MCPS, methyl-accepting 20.3 3.8E+02 0.013 22.4 9.0 19 132-150 53-71 (258)
295 2vs0_A Virulence factor ESXA; 20.2 2.4E+02 0.0083 20.1 7.4 23 156-178 56-78 (97)
No 1
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=94.52 E-value=0.085 Score=41.89 Aligned_cols=77 Identities=17% Similarity=0.235 Sum_probs=50.2
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHH
Q 021664 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT 199 (309)
Q Consensus 120 fVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~ 199 (309)
|||+|-+..-..+. ++|..|.+|...+...+.-|-|....=-+++.+++..-..-|.-++.|-....+
T Consensus 8 YVT~Kqf~e~l~~F------------k~~~~~~~~~~kie~~~~~QgEqI~~qGeqIkeLq~eqkaQg~tl~lil~tL~~ 75 (85)
T 2ba2_A 8 YVTHKQLDEKLKNF------------VTKTEFKEFQTVVMESFAVQNQNIDAQGEQIKELQVEQKAQGKTLQLILEALQG 75 (85)
T ss_dssp BCBHHHHHHHHTTB------------CBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeHHHHHHHHHhh------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89998877643221 355555566666666555555555555555556555556667777788888888
Q ss_pred HHHHHHHhh
Q 021664 200 LESKLIEIE 208 (309)
Q Consensus 200 Le~Ki~~ie 208 (309)
+..+||.||
T Consensus 76 ~nkRLDkle 84 (85)
T 2ba2_A 76 INKRLDNLE 84 (85)
T ss_dssp HHHHHHHHT
T ss_pred HHHHhhccC
Confidence 888888887
No 2
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=93.57 E-value=0.87 Score=36.97 Aligned_cols=80 Identities=10% Similarity=0.282 Sum_probs=63.7
Q ss_pred HHHHHhH---HHHHHHHHHHHHHHHHhHhhhh----hhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHH
Q 021664 131 NSVARQL---EDVYSSISAAQRQLSSKITSVD----RDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (309)
Q Consensus 131 ~sv~KqL---eqVs~sL~~aKrhLsqRI~~vD----~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~K 203 (309)
+.++||| .|..+.+..+|+.|..+|+.+. .|++++.+....++.++..-..+|..+..+++....-=..|..+
T Consensus 11 aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~ 90 (107)
T 2no2_A 11 AEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAE 90 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666 4677889999999999999865 67788888888888898888888888888888888777777777
Q ss_pred HHHhhhh
Q 021664 204 LIEIEGK 210 (309)
Q Consensus 204 i~~ie~k 210 (309)
++.++.-
T Consensus 91 ~~~l~~E 97 (107)
T 2no2_A 91 FAELEKE 97 (107)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766543
No 3
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=89.99 E-value=3.7 Score=38.87 Aligned_cols=77 Identities=14% Similarity=0.150 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHH
Q 021664 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (309)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~ 202 (309)
-|.+++..+-..=..+-++|..+.+.+.+-|++.-. ..|+......++.++++++.++.++.-.-..-++.|-+|-.
T Consensus 356 ~~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (471)
T 3mq9_A 356 AVRTAVINAASGRQTVDEALKDAQTRITAARDGLRA-VMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMA 432 (471)
T ss_dssp HHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHH-HHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHH
Confidence 345555555444345677888888888888888644 44788889999999999999999998888887777766643
No 4
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=89.35 E-value=2.5 Score=42.13 Aligned_cols=96 Identities=10% Similarity=0.208 Sum_probs=62.9
Q ss_pred cCcchhhhhhhHHHHHHHHHHhHHHHHHHHHHHH---HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh-----hh
Q 021664 115 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQ---RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK-----LI 186 (309)
Q Consensus 115 ~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aK---rhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~-----~i 186 (309)
+.|+|=-+.++....+..|-..|++++..-..++ ++|+..+...+.++.++.+..+.-.+++.+.+.-++ ++
T Consensus 87 l~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~ 166 (464)
T 1m1j_B 87 LQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNI 166 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3788888889999999999999999987766655 346666666666666655555555555444443332 23
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhh
Q 021664 187 GDEFQSVRDIVQTLESKLIEIEGK 210 (309)
Q Consensus 187 g~Dv~~v~~~V~~Le~Ki~~ie~k 210 (309)
...+..++..+..|..||..+|.+
T Consensus 167 ~~~i~~L~~~~~~l~~ki~~l~~~ 190 (464)
T 1m1j_B 167 PSSLRVLRAVIDSLHKKIQKLENA 190 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666655
No 5
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=89.06 E-value=6 Score=35.22 Aligned_cols=39 Identities=15% Similarity=0.277 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHH
Q 021664 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (309)
Q Consensus 126 ms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde 164 (309)
++.|+..+...+..+.+.++.+-+++...++.+....++
T Consensus 5 va~a~~em~~~i~~i~~~~~~~s~~~~~~~~~~~~~~~~ 43 (213)
T 3g67_A 5 VKERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKISEN 43 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554444444444444444333333
No 6
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=89.01 E-value=3.8 Score=36.50 Aligned_cols=65 Identities=11% Similarity=0.129 Sum_probs=30.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHH
Q 021664 133 VARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIV 197 (309)
Q Consensus 133 v~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V 197 (309)
+...++++++.+...-.++....+.+....+++.+..+.+.+++.+....+.++...++.+...+
T Consensus 5 va~a~~em~~~i~~i~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (213)
T 3g67_A 5 VKERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKISENIMEELKKSGTNVDQIVERVKEASSQI 69 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445554444555555555544455444444444444444444444444443333333
No 7
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=88.22 E-value=3.6 Score=40.39 Aligned_cols=93 Identities=10% Similarity=0.141 Sum_probs=49.5
Q ss_pred CcchhhhhhhHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhh
Q 021664 116 PDMMFATRRSLSDACNSVARQLEDVY-------SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGD 188 (309)
Q Consensus 116 SDlMfVTKRnms~Av~sv~KqLeqVs-------~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~ 188 (309)
-++|==+.|++.+.++.+...|+.++ .-+..++.-|.+|.....+.=+-..|.+..++.....++++|..---
T Consensus 55 qg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~ 134 (390)
T 1deq_A 55 KGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ 134 (390)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34455566777777777777776653 33444555555555555555555555555555555555555443222
Q ss_pred hHHHHHHHHHHHHHHHHHhh
Q 021664 189 EFQSVRDIVQTLESKLIEIE 208 (309)
Q Consensus 189 Dv~~v~~~V~~Le~Ki~~ie 208 (309)
.|..++..|+.+-.||.+||
T Consensus 135 ~ir~Lq~~l~~q~~kiqRLE 154 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRLE 154 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444
No 8
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.98 E-value=2.6 Score=40.11 Aligned_cols=66 Identities=9% Similarity=-0.056 Sum_probs=53.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHH
Q 021664 158 VDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (309)
Q Consensus 158 vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~ 223 (309)
+....+++.++.++.+.|-..++.+.+.++.+++.+++--..++..+.+++..=.-+++-...+|.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (487)
T 3oja_A 412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVV 477 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHH
Confidence 445666677788888888888889999999999999988888888888888777777777777775
No 9
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=87.53 E-value=4.7 Score=41.11 Aligned_cols=95 Identities=8% Similarity=0.122 Sum_probs=63.7
Q ss_pred CcchhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH-------HHHHHHHHHHHHhhhchhhhhh
Q 021664 116 PDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV-------EISQATQEEVTILRGRSKLIGD 188 (309)
Q Consensus 116 SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~-------eis~~i~~eV~~v~~dl~~ig~ 188 (309)
-++|-=+-|++.+-++.|-.+|++++.+=..+-....+-.+.|..++.+.. |++.+++..+..++..|.+--.
T Consensus 52 QglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQls 131 (562)
T 3ghg_A 52 KGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQ 131 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677889999999999999999987766666666655555555555444 4444455555555555544445
Q ss_pred hHHHHHHHHHHHHHHHHHhhhh
Q 021664 189 EFQSVRDIVQTLESKLIEIEGK 210 (309)
Q Consensus 189 Dv~~v~~~V~~Le~Ki~~ie~k 210 (309)
-++.||..|+.+-.||.++|--
T Consensus 132 nIrvLQsnLedq~~kIQRLEvD 153 (562)
T 3ghg_A 132 HIQLLQKNVRAQLVDMKRLEVD 153 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777788888743
No 10
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=87.27 E-value=1.3 Score=36.24 Aligned_cols=53 Identities=13% Similarity=0.186 Sum_probs=28.6
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHh
Q 021664 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (309)
Q Consensus 152 sqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (309)
..+|++|...++.+...-....+.+.++... ...+++.++..+..||.-|..+
T Consensus 42 rr~iq~L~~el~~l~~~~~~LE~~l~e~e~~---~~~~l~~~q~~i~~lE~eL~~~ 94 (129)
T 3tnu_B 42 NRMIQRLRAEIDNVKKQCANLQNAIADAEQR---GELALKDARNKLAELEEALQKA 94 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHH
Confidence 3456666666666655555555555544432 3334555555555555555443
No 11
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=86.64 E-value=5.1 Score=29.69 Aligned_cols=70 Identities=19% Similarity=0.254 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHhHHHHHH-HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHH
Q 021664 125 SLSDACNSVARQLEDVYS-SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (309)
Q Consensus 125 nms~Av~sv~KqLeqVs~-sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~ 194 (309)
.|+.+.+.|=.|-|.+-. .-+.+..-...+++.+........+-....++|+++++..+....-|+++++
T Consensus 6 DL~~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 6 DCTAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 566777777777665543 3445666677788877777777777777777777777777666666666553
No 12
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=86.31 E-value=3.9 Score=36.66 Aligned_cols=27 Identities=4% Similarity=0.118 Sum_probs=12.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 021664 184 KLIGDEFQSVRDIVQTLESKLIEIEGK 210 (309)
Q Consensus 184 ~~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (309)
..+..+++....-...||.+|-++...
T Consensus 93 ~aL~kEie~~~~~i~~lE~eile~~e~ 119 (256)
T 3na7_A 93 RSLNIEEDIAKERSNQANREIENLQNE 119 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444454444444433
No 13
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=85.61 E-value=1.6 Score=34.64 Aligned_cols=56 Identities=9% Similarity=0.120 Sum_probs=39.0
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHH-HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021664 122 TRRSLSDACNSVARQLEDVYSSIS-AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR 180 (309)
Q Consensus 122 TKRnms~Av~sv~KqLeqVs~sL~-~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~ 180 (309)
--+.+...++++++.++++..... ..|+. .|..++..|||..|+.+++.-||..+-
T Consensus 20 YE~df~~l~~~i~~kl~~i~~~~~~e~rk~---~i~~ie~~ldEA~eLl~qMelE~r~~p 76 (102)
T 2qyw_A 20 LHEIFRGLLEDLQGVPERLLGTAGTEEKKK---LVRDFDEKQQEANETLAEMEEELRYAP 76 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCSHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCcHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345566777777777777643322 34443 477788899999999999998887663
No 14
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=85.56 E-value=2.6 Score=33.18 Aligned_cols=53 Identities=9% Similarity=0.173 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 021664 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (309)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v 179 (309)
+.+...++++...|+++...=...|+. -|..++..+||..|+..+|.-||..+
T Consensus 8 ~df~~~~~~i~~~l~~~~~~~ge~Rk~---~i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 8 SDFKTTLEQAKASLAEAPSQPLSQRNT---TLKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHGGGSCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccChHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345677888888888876333334443 46778889999999999999999888
No 15
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=85.44 E-value=1.3 Score=36.36 Aligned_cols=69 Identities=6% Similarity=0.272 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHH---HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHh
Q 021664 136 QLEDVYSSISAAQRQ---LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (309)
Q Consensus 136 qLeqVs~sL~~aKrh---LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (309)
+...-.+.+..+|.+ |..+|++|...++.+...-....+.+.++.. +...+++..+..+..||.-|..+
T Consensus 25 ~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~---~~~~~l~~~q~~i~~lE~eL~~~ 96 (131)
T 3tnu_A 25 EVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKG---RYCMQLAQIQEMIGSVEEQLAQL 96 (131)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334555555543 4456777777777766666666666655554 23445666666666666666544
No 16
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=85.03 E-value=12 Score=32.02 Aligned_cols=77 Identities=13% Similarity=0.223 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHH------------HhhhchhhhhhhHHHHHHHHH--------HHHH
Q 021664 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT------------ILRGRSKLIGDEFQSVRDIVQ--------TLES 202 (309)
Q Consensus 143 sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~------------~v~~dl~~ig~Dv~~v~~~V~--------~Le~ 202 (309)
-+.+-|++|..|.|+|=.++|+.+.+.+.+|++|. .++.|+.....|++.+...+. .+|.
T Consensus 11 y~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~ 90 (141)
T 3okq_A 11 YMEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEA 90 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHH
Confidence 46678889999999999999999999999988874 344555555555555555543 4667
Q ss_pred HHHHhhhhhhhHhHHHH
Q 021664 203 KLIEIEGKQDITTLGVK 219 (309)
Q Consensus 203 Ki~~ie~kQd~Tn~GV~ 219 (309)
-|..|..-|+|=|.==.
T Consensus 91 EL~~VceEQqfl~~Qed 107 (141)
T 3okq_A 91 ELDKVCEEQQFLTLQEE 107 (141)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777665433
No 17
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=84.03 E-value=1 Score=29.65 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=25.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 021664 183 SKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (309)
Q Consensus 183 l~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (309)
+++..+|+.+++.+|+.|..+++++|..-
T Consensus 1 isrlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 1 VSRLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999764
No 18
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=83.86 E-value=1.3 Score=35.27 Aligned_cols=62 Identities=10% Similarity=0.124 Sum_probs=45.2
Q ss_pred CcchhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021664 116 PDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR 180 (309)
Q Consensus 116 SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~ 180 (309)
|+++----+.+...++++.+.++++...=...|+. -|..++..|||..|+..+|.-||..+-
T Consensus 4 SelFe~YE~df~~l~~~i~~kl~~i~~~~geerk~---~i~~ie~~l~EA~ell~qMelE~r~~p 65 (102)
T 1vcs_A 4 GSSGEGYEQDFAVLTAEITSKIARVPRLPPDEKKQ---MVANVEKQLEEARELLEQMDLEVREIP 65 (102)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHHHHGGGSCTTTHHH---HHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34444445667788889999998876432334443 377888999999999999999987663
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.58 E-value=8.3 Score=37.24 Aligned_cols=37 Identities=3% Similarity=0.083 Sum_probs=30.1
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhh
Q 021664 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVD 159 (309)
Q Consensus 123 KRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD 159 (309)
...+.+.+..+...+++....++..++++..|.+...
T Consensus 458 ~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~ 494 (597)
T 3oja_B 458 VNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYR 494 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence 3446678888888888888999999999988887766
No 20
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=83.40 E-value=2.1 Score=40.06 Aligned_cols=58 Identities=9% Similarity=0.213 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHH
Q 021664 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (309)
Q Consensus 137 LeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~ 194 (309)
..|++++++.++....+|+.+|+.++++...=..++.+.|.++-..+-.|..+++.|+
T Consensus 200 v~QL~~s~~~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~ 257 (268)
T 2yo3_A 200 YAQLKRSVEEANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIK 257 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778899999888888888877777666666666666655555555555555544
No 21
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=83.23 E-value=2.9 Score=34.80 Aligned_cols=59 Identities=19% Similarity=0.279 Sum_probs=35.3
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhh-hHHHHHHHHHHHHHHHHHhhhc
Q 021664 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDR-DVNKIVEISQATQEEVTILRGR 182 (309)
Q Consensus 122 TKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~-klde~~eis~~i~~eV~~v~~d 182 (309)
|++-|.++|.++..+|+.+.+++..+.++=. |- +++. .+..=+.....++++|..++..
T Consensus 68 ~~~EL~~~l~sie~dLeDLe~sI~ivE~np~-kF-~l~~~Ei~~Rr~fV~~~r~~I~~mk~~ 127 (130)
T 4dnd_A 68 TTNELRNGLRSIEWDLEDLEETIGIVEANPG-KF-KLPAGDLQERKVFVERMREAVQEMKDH 127 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-HH-CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH-hc-CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777888888888888877777765532 22 2222 2444455555555555555544
No 22
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=83.23 E-value=12 Score=27.78 Aligned_cols=75 Identities=12% Similarity=0.172 Sum_probs=40.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhHhhhhh-----hHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHH
Q 021664 132 SVARQLEDVYSSISAAQRQLSSKITSVDR-----DVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (309)
Q Consensus 132 sv~KqLeqVs~sL~~aKrhLsqRI~~vD~-----klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ 206 (309)
.+++++.+..+.|...-..|.+.|+.|.. --+.-.+...+.+..+..+...|..|...+...-..++.-|.++.+
T Consensus 15 ~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~D~~~A~ 94 (98)
T 3gwk_C 15 SSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQTDADIAS 94 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444411 1123344555666666677777777777777777666666665543
No 23
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=82.66 E-value=19 Score=29.57 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=13.7
Q ss_pred HHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHh
Q 021664 173 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (309)
Q Consensus 173 ~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (309)
+.++..+...+..+..++..+..-+..++..+..+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (284)
T 1c1g_A 68 QEKLELAEKKATDAEADVASLNRRIQLFEEELDRA 102 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444443333343333333
No 24
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=82.15 E-value=13 Score=35.10 Aligned_cols=44 Identities=7% Similarity=0.243 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHhHHHHHHHH------HHHHHHHHHhHhhhhhhHHHHHH
Q 021664 124 RSLSDACNSVARQLEDVYSSI------SAAQRQLSSKITSVDRDVNKIVE 167 (309)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL------~~aKrhLsqRI~~vD~klde~~e 167 (309)
....+|++.+.+++++.-+.+ ..+.++|.+.|+++.+++-+...
T Consensus 369 ~t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 418 (471)
T 3mq9_A 369 QTVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEA 418 (471)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHH
Confidence 456666666666666554443 34456788888888888765433
No 25
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=82.04 E-value=31 Score=31.76 Aligned_cols=15 Identities=20% Similarity=0.251 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHhhcc
Q 021664 216 LGVKKLCDRARELEN 230 (309)
Q Consensus 216 ~GV~~LC~f~~~~~~ 230 (309)
.....|-+.+..++.
T Consensus 283 ~~~~~l~~~a~~L~~ 297 (341)
T 3zx6_A 283 AAAAALEEQASRLTE 297 (341)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555555444
No 26
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=81.15 E-value=34 Score=31.54 Aligned_cols=9 Identities=22% Similarity=0.313 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 021664 61 LLAEVSSVQ 69 (309)
Q Consensus 61 L~aQV~~La 69 (309)
|...+++++
T Consensus 11 l~~~~~~ia 19 (341)
T 3zx6_A 11 LSNTVDKIA 19 (341)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444444
No 27
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=80.39 E-value=11 Score=29.44 Aligned_cols=68 Identities=15% Similarity=0.205 Sum_probs=48.9
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHH
Q 021664 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLC 222 (309)
Q Consensus 155 I~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC 222 (309)
++.|..|+++..+.+...+-||.+++++-.....+.+.++.-...|+.....+..-|..=...|..|.
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777788888888777777777777777777777777777666666666665553
No 28
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=79.86 E-value=17 Score=30.43 Aligned_cols=64 Identities=8% Similarity=0.147 Sum_probs=50.4
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Q 021664 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (309)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (309)
++.++++.+...+++...=....+.|+...+..++....++..++.-+..|+.++.++|.+.+.
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445677777777777777777888888888888888888888888888888888888877654
No 29
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=79.83 E-value=22 Score=30.74 Aligned_cols=70 Identities=9% Similarity=0.073 Sum_probs=46.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021664 129 ACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (309)
Q Consensus 129 Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (309)
+|+.. +.+.+.-..|.....+|..||..++..+.+-....+.++||. ..++--..-+|.|+..++
T Consensus 59 ~vs~~-~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl--------------~aLqlq~n~lE~kl~kLq 123 (152)
T 3a7p_A 59 IVSHD-DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAAL--------------ISGTIENNVLQQKLSDLK 123 (152)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
T ss_pred cccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Confidence 44443 344455666777777777788877777777666666666665 666666777778887777
Q ss_pred h-hhhh
Q 021664 209 G-KQDI 213 (309)
Q Consensus 209 ~-kQd~ 213 (309)
. +++.
T Consensus 124 ~EN~~L 129 (152)
T 3a7p_A 124 KEHSQL 129 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 5 5444
No 30
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=79.59 E-value=15 Score=36.99 Aligned_cols=99 Identities=13% Similarity=0.206 Sum_probs=81.8
Q ss_pred ccCcCcchhhhhhhHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh
Q 021664 112 GWKLPDMMFATRRSLSDACNSVARQLEDV-------YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (309)
Q Consensus 112 Gws~SDlMfVTKRnms~Av~sv~KqLeqV-------s~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~ 184 (309)
|--+-++|-=+.|+..+.++.+.+.|+.+ +.-+..++.-|.+|.....+.=+-..|.+..++.....+++.+.
T Consensus 49 GCrLqglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd 128 (491)
T 1m1j_A 49 GCRMQGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVA 128 (491)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 55566778888899999999888888877 45577788888888888888888888999999999999998887
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhh
Q 021664 185 LIGDEFQSVRDIVQTLESKLIEIEGK 210 (309)
Q Consensus 185 ~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (309)
+--.-+..+|..|+.+-.||.++|.-
T Consensus 129 ~qi~~IrvLq~~l~~q~skIQRLE~d 154 (491)
T 1m1j_A 129 TQVNRIKALQNSIQEQVVEMKRLEVD 154 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65588888888899999999998854
No 31
>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling protein; HET: BCN; 2.90A {Escherichia coli} SCOP: h.4.11.1
Probab=79.57 E-value=11 Score=33.53 Aligned_cols=116 Identities=17% Similarity=0.184 Sum_probs=60.5
Q ss_pred hhHHHHHHHHH--HhHHHHHHHHHHHHHHHHHhHh-------hhhhhHHHHHHHHHHHHHHHHHhhhch----------h
Q 021664 124 RSLSDACNSVA--RQLEDVYSSISAAQRQLSSKIT-------SVDRDVNKIVEISQATQEEVTILRGRS----------K 184 (309)
Q Consensus 124 Rnms~Av~sv~--KqLeqVs~sL~~aKrhLsqRI~-------~vD~klde~~eis~~i~~eV~~v~~dl----------~ 184 (309)
|.|.++...++ +.|.+..+.|-.|+.+|.-=++ ++=+.+|.+..++..+.+++..++... +
T Consensus 26 R~Lh~sl~~l~~d~~l~~a~~~ipdA~~rL~~Vv~~TE~AA~~iLd~vE~~~~~~~~l~~~~~~l~~~w~~l~~~~~~~~ 105 (214)
T 1kmi_Z 26 RMLRDSLRELGLDQAIAEAAEAIPDARDRLYYVVQMTAQAAERALNSVEASQPHQDQMEKSAKALTQRWDDWFADPIDLA 105 (214)
T ss_dssp HHHHHHHHHHTHHHHHHHTTTTHHHHHHHTTTHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCHH
T ss_pred HHHHHHHHHcCCChHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCHH
Confidence 55666665553 3344445556666655533222 233345555555555555555553211 1
Q ss_pred -------hhhhhHHHHHHHHHHHHHHHHHhh---hhhhhHhHHHHHHHHHHHhhccCCCccceec
Q 021664 185 -------LIGDEFQSVRDIVQTLESKLIEIE---GKQDITTLGVKKLCDRARELENGRPTELVQA 239 (309)
Q Consensus 185 -------~ig~Dv~~v~~~V~~Le~Ki~~ie---~kQd~Tn~GV~~LC~f~~~~~~~~~~~~~Q~ 239 (309)
++..=++.+......+...+.+|= .=||.|-+=|......++.++..-..=+...
T Consensus 106 ~~~~l~~~~~~~l~~v~~~~~~~~~~l~eIm~AqdFQDLTGQ~I~KVi~lv~~vE~~L~~ll~~~ 170 (214)
T 1kmi_Z 106 DARELVTDTRQFLADVPAHTSFTNAQLLKIMMAQDFQDLTGQVIKRMMDVIQEIERQLLMVLLEN 170 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111112222222344444444443 3489999999999998888888777666543
No 32
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=79.57 E-value=22 Score=29.16 Aligned_cols=70 Identities=14% Similarity=0.273 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH---hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHH
Q 021664 126 LSDACNSVARQLEDVYSSISAAQRQLSS---KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD 195 (309)
Q Consensus 126 ms~Av~sv~KqLeqVs~sL~~aKrhLsq---RI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~ 195 (309)
...++++=+..++.-|-+|++--|.|.| |++...++++|..+=-+++.+++.++-.+.-.+..++..++.
T Consensus 32 ~d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kk 104 (114)
T 2xzr_A 32 IDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKK 104 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4667888888888888888866666655 444444444444444445555565555555555555555543
No 33
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=79.56 E-value=14 Score=36.29 Aligned_cols=82 Identities=13% Similarity=0.185 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHH----HhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHh
Q 021664 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT----ILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITT 215 (309)
Q Consensus 140 Vs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~----~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn 215 (309)
+...|..+-|.+..||+.|...|++.....+.+..-+. .++.++++..+-=..+.+.-+.||.+|.-|..+-+-..
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~ 133 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQV 133 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667778899999999999999988776666655544 34555556655556667777888888888777755444
Q ss_pred HHHHHH
Q 021664 216 LGVKKL 221 (309)
Q Consensus 216 ~GV~~L 221 (309)
.-|..|
T Consensus 134 ~~ir~L 139 (390)
T 1deq_A 134 QRINLL 139 (390)
T ss_pred HHHHHH
Confidence 433333
No 34
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=78.09 E-value=23 Score=27.75 Aligned_cols=86 Identities=19% Similarity=0.188 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHH
Q 021664 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (309)
Q Consensus 144 L~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~ 223 (309)
|..=+....-|.+.+..++.+..+-.....++|..++..+..+..|++....-....-.|+..-+..-.-+-..|..|.+
T Consensus 14 lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnR 93 (101)
T 3u59_A 14 LKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNR 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555667777777777777777778888888888888888888888877777777777777666666777777776
Q ss_pred HHHhhc
Q 021664 224 RARELE 229 (309)
Q Consensus 224 f~~~~~ 229 (309)
-++-++
T Consensus 94 riqllE 99 (101)
T 3u59_A 94 RIQLVE 99 (101)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 665443
No 35
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=77.91 E-value=5.8 Score=33.58 Aligned_cols=92 Identities=13% Similarity=0.183 Sum_probs=45.0
Q ss_pred CcCcchhhhhhhHHHH------HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhh
Q 021664 114 KLPDMMFATRRSLSDA------CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIG 187 (309)
Q Consensus 114 s~SDlMfVTKRnms~A------v~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig 187 (309)
+..|.+....+.|... .+.+...|+.++..|..+-..|..-.++++-.=+...+ +.+-...++.=-...|
T Consensus 67 ~~~~~L~~a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~rL~~----ie~RL~~l~~L~RKyg 142 (175)
T 4abx_A 67 NAAGLIGEAVRALNAGAKYDETVMQLQNELRAALESVQAIAGELRDVAEGSAADPEALDR----VEARLSALSKLKNKYG 142 (175)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHH----HHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH----HHHHHHHHHHHHHHcC
Confidence 3445555556655532 34455555555555555555555555555432222222 2222222332223345
Q ss_pred hhHHHHHHHHHHHHHHHHHhhh
Q 021664 188 DEFQSVRDIVQTLESKLIEIEG 209 (309)
Q Consensus 188 ~Dv~~v~~~V~~Le~Ki~~ie~ 209 (309)
.+++.|-..-..+..++..++.
T Consensus 143 ~~~eell~~~~~~~~eL~~l~~ 164 (175)
T 4abx_A 143 PTLEDVVEFGAQAAEELAGLEE 164 (175)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhC
Confidence 5566666666666666665543
No 36
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=77.54 E-value=18 Score=35.45 Aligned_cols=43 Identities=14% Similarity=0.167 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHh
Q 021664 165 IVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (309)
Q Consensus 165 ~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (309)
+.+-++.+.+|+..+...+.+....+..++.++..++.||..+
T Consensus 82 ~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l 124 (409)
T 1m1j_C 82 LTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQL 124 (409)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHH
Confidence 3444445555555555555555555555555555555555544
No 37
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=77.52 E-value=7.1 Score=28.16 Aligned_cols=49 Identities=10% Similarity=0.205 Sum_probs=23.7
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhH
Q 021664 154 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTL 216 (309)
Q Consensus 154 RI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~ 216 (309)
.++.|..++..++.++..|.+|| +.=..+...|+.++++...+-..++.
T Consensus 10 ~Ld~L~~~v~~lk~~a~~Ig~El--------------~~Qn~lLd~l~~~~d~~~~~l~~~~~ 58 (65)
T 1gl2_D 10 GLDALSSIISRQKQMGQEIGNEL--------------DEQNEIIDDLANLVENTDEKLRTEAR 58 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555 44444444444444444444444443
No 38
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=76.66 E-value=25 Score=35.09 Aligned_cols=42 Identities=10% Similarity=0.249 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 021664 141 YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR 182 (309)
Q Consensus 141 s~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~d 182 (309)
.+.|...++++...|+.|.+++++....+..+++-|..++..
T Consensus 88 ~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~s 129 (464)
T 1m1j_B 88 QTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNK 129 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 444445555555556666666655554444433333333333
No 39
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=76.59 E-value=25 Score=27.49 Aligned_cols=68 Identities=22% Similarity=0.291 Sum_probs=44.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHH
Q 021664 134 ARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (309)
Q Consensus 134 ~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le 201 (309)
-|++++-.+.+..--..|..||..+...+|...+--...+.++.+.....+.--.++.++++-++-||
T Consensus 32 ~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 32 KKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444444444455555777777777777777777777777776666666666777777776666655
No 40
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=76.57 E-value=7.4 Score=35.63 Aligned_cols=59 Identities=20% Similarity=0.268 Sum_probs=51.5
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 021664 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (309)
Q Consensus 152 sqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (309)
..||..+..++|+..+=+....+.+....-.+.++..|+..++.-|..||+|+...|.+
T Consensus 83 e~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~ 141 (242)
T 3c9i_A 83 EARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENN 141 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccc
Confidence 57999999999999988888888888888888999999999999899999988877765
No 41
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=76.31 E-value=4.7 Score=32.45 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=27.7
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh
Q 021664 145 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (309)
Q Consensus 145 ~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~ 184 (309)
..|++.|..|++.++..+++..+....++++++.+...+.
T Consensus 87 ~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~ 126 (133)
T 1fxk_C 87 EDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAE 126 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777777766655543
No 42
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=75.87 E-value=2.1 Score=29.97 Aligned_cols=30 Identities=13% Similarity=0.313 Sum_probs=22.1
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 021664 147 AQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (309)
Q Consensus 147 aKrhLsqRI~~vD~klde~~eis~~i~~eV 176 (309)
+|.+|-|.|++||+.++...+-+...++..
T Consensus 3 tk~~l~qkI~kVdrEI~Kte~kI~~lqkKl 32 (42)
T 2l5g_B 3 SKEELIQNMDRVDREITMVEQQISKLKKKQ 32 (42)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999998877665555554444
No 43
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=75.69 E-value=18 Score=27.34 Aligned_cols=60 Identities=17% Similarity=0.205 Sum_probs=33.7
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021664 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (309)
Q Consensus 149 rhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (309)
.....|.+.+..++.+...-.....++|..++..+..+..|++....-+.....||..-+
T Consensus 16 d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeae 75 (81)
T 1ic2_A 16 ENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELAD 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555555555666666666666666666666555555555555443
No 44
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=75.02 E-value=29 Score=27.37 Aligned_cols=80 Identities=15% Similarity=0.178 Sum_probs=55.5
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHH
Q 021664 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAR 226 (309)
Q Consensus 147 aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~ 226 (309)
=+....-|.+.+..++.+..+-.....+||..++..+..+..|++..+.-+...-.|+..-+..-.-+-..|..|-+-++
T Consensus 17 e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriq 96 (101)
T 3u1c_A 17 DKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677777777777777778888888888888888888888777777667776666555555555665544443
No 45
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=75.00 E-value=15 Score=26.45 Aligned_cols=58 Identities=17% Similarity=0.238 Sum_probs=42.1
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021664 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (309)
Q Consensus 151 LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (309)
|.+++.++..|++...-|......+|......++.....-..-+..+..||.|+.+++
T Consensus 3 ~~~~~~~le~k~~~~e~iv~~l~~~v~~~~~~le~~~~q~~~~~~~i~~Le~k~~~l~ 60 (66)
T 3m0a_A 3 LLQRCESLEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLE 60 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHH
Confidence 5667777777777766666666667777777777766665566778888888887765
No 46
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=74.82 E-value=22 Score=25.91 Aligned_cols=30 Identities=13% Similarity=0.247 Sum_probs=18.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhHhhh
Q 021664 129 ACNSVARQLEDVYSSISAAQRQLSSKITSV 158 (309)
Q Consensus 129 Av~sv~KqLeqVs~sL~~aKrhLsqRI~~v 158 (309)
.+..+++++.+..+.|...-..|.++|+.|
T Consensus 13 ~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L 42 (93)
T 4ioe_A 13 ELERIAGNFKNAAGEAQSQINRLEGDINSL 42 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666666
No 47
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=74.39 E-value=22 Score=25.85 Aligned_cols=57 Identities=14% Similarity=0.176 Sum_probs=34.1
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH-----HHHHHHHHHHHHhhhchhhhhhhHH
Q 021664 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIV-----EISQATQEEVTILRGRSKLIGDEFQ 191 (309)
Q Consensus 135 KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~-----eis~~i~~eV~~v~~dl~~ig~Dv~ 191 (309)
.+|+++...+..+..+|.+.+++|...++... +-.....++..+.+..+.++...++
T Consensus 12 e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~ 73 (93)
T 4ioe_A 12 EELERIAGNFKNAAGEAQSQINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQYIPILE 73 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777888888888888877777777653 2334444444444444444433333
No 48
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=74.23 E-value=23 Score=25.87 Aligned_cols=68 Identities=10% Similarity=0.207 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhhhHHHH------------HHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHH
Q 021664 136 QLEDVYSSISAAQRQLSSKITSVDRDVNKI------------VEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (309)
Q Consensus 136 qLeqVs~sL~~aKrhLsqRI~~vD~klde~------------~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~K 203 (309)
+|+++...+..+..+|.+.+++|+..++.. .+.....+..+..+..-|..|...+.......+.-|.+
T Consensus 13 ~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~d~~ 92 (99)
T 3zbh_A 13 ELRGVARQYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATILEDTDQQ 92 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443 22333344444444444444444444444444444433
No 49
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=74.07 E-value=13 Score=28.47 Aligned_cols=50 Identities=14% Similarity=0.132 Sum_probs=26.9
Q ss_pred HHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHH
Q 021664 172 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (309)
Q Consensus 172 i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (309)
+..-|..++.=--.||.+++.=+.++..|+.|+++...+=..+|.-+..|
T Consensus 34 Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~l 83 (87)
T 1sfc_D 34 VSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 83 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344555556666666666666666666666665554443
No 50
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=73.73 E-value=19 Score=25.88 Aligned_cols=54 Identities=7% Similarity=0.112 Sum_probs=27.5
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHH
Q 021664 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVK 219 (309)
Q Consensus 152 sqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~ 219 (309)
-+.++.|..++..++.++..|.+|+ +.=..+...|+.++++...+=..++.-+.
T Consensus 9 D~~Ld~L~~~v~~lk~la~~ig~El--------------~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~ 62 (66)
T 1n7s_D 9 DENLEQVSGIIGNLRHMALDMGNEI--------------DTQNRQIDRIMEKADSNKTRIDEANQRAT 62 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555554444 45555555555555555555555544433
No 51
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=73.69 E-value=10 Score=26.69 Aligned_cols=43 Identities=16% Similarity=0.261 Sum_probs=16.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHH
Q 021664 158 VDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (309)
Q Consensus 158 vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~L 200 (309)
++.+++++.+.-...+.+..+.+..+.+.-.++..++.-+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKK 52 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333
No 52
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=73.12 E-value=21 Score=36.53 Aligned_cols=73 Identities=12% Similarity=0.207 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHH----HHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhh
Q 021664 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQAT----QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (309)
Q Consensus 140 Vs~sL~~aKrhLsqRI~~vD~klde~~eis~~i----~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (309)
+...|-.+-+-|+.||+.|-.++|+...-.+.+ +..+..++.++.+.++--..+.++-+.||.+|..|+.+-|
T Consensus 51 LQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVd 127 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVI 127 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred hhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 567788899999999999999999986655544 4556667777777773333344444477777777766543
No 53
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=72.97 E-value=30 Score=26.72 Aligned_cols=35 Identities=9% Similarity=0.158 Sum_probs=17.4
Q ss_pred HHHHHHhHHHHHHHHH---HHHHHHHHhHhhhhhhHHH
Q 021664 130 CNSVARQLEDVYSSIS---AAQRQLSSKITSVDRDVNK 164 (309)
Q Consensus 130 v~sv~KqLeqVs~sL~---~aKrhLsqRI~~vD~klde 164 (309)
...+.+.++++.+.|. .-+..+.++|+.+...++.
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~ 42 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEE 42 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555544443 3344555556555555544
No 54
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=72.74 E-value=28 Score=26.22 Aligned_cols=65 Identities=14% Similarity=0.213 Sum_probs=50.8
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHh
Q 021664 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITT 215 (309)
Q Consensus 151 LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn 215 (309)
+..+++.+-...|...+=......++.+..........|+.+++.-+..||.-++..+..=.-++
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~ 68 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777777788888888888999999999999999998888776644333
No 55
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=72.47 E-value=14 Score=28.01 Aligned_cols=41 Identities=17% Similarity=0.270 Sum_probs=29.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHH
Q 021664 183 SKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (309)
Q Consensus 183 l~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~ 223 (309)
-..||.|++.=..++..|+.++++...+=..++.-+..+..
T Consensus 35 a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~ 75 (82)
T 2nps_D 35 SQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSH 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666777777777888888887777777777776644
No 56
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=71.77 E-value=7.9 Score=29.33 Aligned_cols=57 Identities=14% Similarity=0.165 Sum_probs=41.7
Q ss_pred HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021664 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (309)
Q Consensus 153 qRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (309)
..++.|..++..++.++..|.+||.+=-.-|..+..|++.....+..--.|+..+-.
T Consensus 19 ~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~ 75 (82)
T 2nps_D 19 EQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSH 75 (82)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777888888888777777777788888877777766667666544
No 57
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=70.34 E-value=25 Score=26.90 Aligned_cols=59 Identities=7% Similarity=0.144 Sum_probs=34.2
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021664 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (309)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (309)
+.-+.++.|...+..++.+...|.+||..=-.-|..|..+++.....+..--.|+..+-
T Consensus 26 eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll 84 (87)
T 1sfc_D 26 EMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 84 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555666666666666555666666666666666655555555543
No 58
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=69.84 E-value=9.5 Score=27.48 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=34.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhh
Q 021664 134 ARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL 185 (309)
Q Consensus 134 ~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ 185 (309)
-.+|+.++..+...| +++..| ...+++|.++...+.++|......+..
T Consensus 8 D~~Ld~L~~~v~~lk-~~a~~I---g~El~~Qn~lLd~l~~~~d~~~~~l~~ 55 (65)
T 1gl2_D 8 DAGLDALSSIISRQK-QMGQEI---GNELDEQNEIIDDLANLVENTDEKLRT 55 (65)
T ss_dssp CHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888887654 566554 578999999998888888666655443
No 59
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=69.63 E-value=38 Score=33.12 Aligned_cols=49 Identities=16% Similarity=0.250 Sum_probs=27.0
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHhhcc
Q 021664 182 RSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELEN 230 (309)
Q Consensus 182 dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~~~~ 230 (309)
+.+.+.+++..+..++..-|..|.+++..-+-.+.-|..|-+-+..+++
T Consensus 85 ~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 85 KSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3344555555555555555556666665444445566666655555544
No 60
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=69.59 E-value=7.2 Score=32.31 Aligned_cols=40 Identities=10% Similarity=0.168 Sum_probs=27.1
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh
Q 021664 145 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (309)
Q Consensus 145 ~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~ 184 (309)
..|++.|..||+.++..+++..+..+.++++++.+...+.
T Consensus 97 ~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~ 136 (151)
T 2zdi_C 97 DEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQ 136 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777776665555443
No 61
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=68.78 E-value=31 Score=25.06 Aligned_cols=65 Identities=17% Similarity=0.170 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHH------------HHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHH
Q 021664 137 LEDVYSSISAAQRQLSSKITSVDRDVNK------------IVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (309)
Q Consensus 137 LeqVs~sL~~aKrhLsqRI~~vD~klde------------~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le 201 (309)
|+++...+..+..+|.+.++.|+..++. ..+...+.+..+..+..-|..|...+.......+.-|
T Consensus 11 l~~~A~~~~~~~~~l~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~y~~~d 87 (97)
T 2vs0_A 11 IRAKSQSYGQGSDQIRQILSDLTRAQGEIAANWEGQAFSRFEEQFQQLSPKVEKFAQLLEEIKQQLNSTADAVQEQD 87 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444443 2333334444444444444444444444444444333
No 62
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=67.39 E-value=34 Score=33.65 Aligned_cols=92 Identities=12% Similarity=0.150 Sum_probs=41.2
Q ss_pred CcchhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHh-------hhhhhHHHHHHHHHHHHHHHHHhhhchhhhhh
Q 021664 116 PDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKIT-------SVDRDVNKIVEISQATQEEVTILRGRSKLIGD 188 (309)
Q Consensus 116 SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~-------~vD~klde~~eis~~i~~eV~~v~~dl~~ig~ 188 (309)
.|+|.==.++..+-+..|-..|++|+.+=+.|+..+..==+ ...+..|-..+-++.+.+|+......+.+...
T Consensus 26 ~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~ 105 (411)
T 3ghg_C 26 ADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDS 105 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34444444555555555555555555544444432221111 11222344444444445555444444444444
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 021664 189 EFQSVRDIVQTLESKLIEI 207 (309)
Q Consensus 189 Dv~~v~~~V~~Le~Ki~~i 207 (309)
.|..++.++...+.||..+
T Consensus 106 ~i~~l~~~~~~~~~~i~~L 124 (411)
T 3ghg_C 106 SIRYLQEIYNSNNQKIVNL 124 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555544444444333
No 63
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=67.09 E-value=11 Score=26.66 Aligned_cols=36 Identities=8% Similarity=0.345 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhh
Q 021664 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRD 161 (309)
Q Consensus 126 ms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~k 161 (309)
|.+.+..+-..+-.+-....+++.+|.|||..+..+
T Consensus 10 Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 10 LGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444555555555555555677999999999998765
No 64
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=66.91 E-value=69 Score=28.44 Aligned_cols=57 Identities=9% Similarity=0.094 Sum_probs=29.2
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHH----HHHHHHHHHHHHhh
Q 021664 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR----DIVQTLESKLIEIE 208 (309)
Q Consensus 152 sqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~----~~V~~Le~Ki~~ie 208 (309)
..||+.+.+++.+.++-.+..++++.++...++....++...+ ..+..++..+..+.
T Consensus 103 ~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~ 163 (256)
T 3na7_A 103 KERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIF 163 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555553322 23344444444443
No 65
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=66.27 E-value=24 Score=24.71 Aligned_cols=47 Identities=15% Similarity=0.236 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 021664 136 QLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR 182 (309)
Q Consensus 136 qLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~d 182 (309)
+++.-.+....-.+++..+++....++++..+-...+++++.+.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 9 TLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444545566666666666666666666666666666555544
No 66
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=65.36 E-value=37 Score=24.72 Aligned_cols=27 Identities=4% Similarity=0.086 Sum_probs=10.8
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021664 154 KITSVDRDVNKIVEISQATQEEVTILR 180 (309)
Q Consensus 154 RI~~vD~klde~~eis~~i~~eV~~v~ 180 (309)
..+..+..+++..+.-..|.+.+....
T Consensus 57 ~~~~~~~~~~~~~~~L~~i~~~L~~~a 83 (99)
T 3zbh_A 57 QYQELRPSFEKMAVLLNEVGQQLHNSA 83 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444443333
No 67
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=64.61 E-value=19 Score=27.79 Aligned_cols=39 Identities=10% Similarity=0.326 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHH
Q 021664 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (309)
Q Consensus 126 ms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde 164 (309)
|.+.+..+-..+-.+-....+++.+|.|||.+|..++-.
T Consensus 12 LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 12 MESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444444555555555555567999999999999887655
No 68
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=64.56 E-value=35 Score=25.27 Aligned_cols=59 Identities=15% Similarity=0.153 Sum_probs=38.5
Q ss_pred HHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhh----hhhHhHHHHHHHHHHHhhccC
Q 021664 173 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK----QDITTLGVKKLCDRARELENG 231 (309)
Q Consensus 173 ~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~k----Qd~Tn~GV~~LC~f~~~~~~~ 231 (309)
.+++..+..++..++.=+..+..+|..=+.-|++||++ ++.+..|...|-.+.+--+.+
T Consensus 9 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~ 71 (77)
T 1jth_B 9 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKA 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555566666666777777777778888888877 666777888887766543333
No 69
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=63.80 E-value=11 Score=28.87 Aligned_cols=54 Identities=9% Similarity=0.129 Sum_probs=37.1
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021664 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (309)
Q Consensus 149 rhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (309)
..|.+||+.|..|+--|....+...+.|++-+.. |+.++.-+..|-.|+..++.
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~-------Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLT-------GARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhh
Confidence 4577899999999888888888888888766655 55666666666677776664
No 70
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=63.19 E-value=47 Score=36.02 Aligned_cols=15 Identities=13% Similarity=0.477 Sum_probs=6.2
Q ss_pred HhHhhhhhhHHHHHH
Q 021664 153 SKITSVDRDVNKIVE 167 (309)
Q Consensus 153 qRI~~vD~klde~~e 167 (309)
.++..++.++++..+
T Consensus 984 ~~v~~L~~e~~~l~~ 998 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRK 998 (1080)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 71
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=62.89 E-value=30 Score=26.86 Aligned_cols=45 Identities=11% Similarity=0.287 Sum_probs=26.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 021664 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (309)
Q Consensus 128 ~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV 176 (309)
..|++++..|+.+.. =-..|..||..+...|++..+=+...+.|+
T Consensus 6 ~e~e~~~~klq~~E~----rN~~Le~~v~~le~~Le~s~~~q~~~~~El 50 (79)
T 3cvf_A 6 AEREETQQKVQDLET----RNAELEHQLRAMERSLEEARAERERARAEV 50 (79)
T ss_dssp ----CTTHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555544332 234477777777777777777777777666
No 72
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=62.83 E-value=33 Score=26.62 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhhchhhhhhhHHHHHHH
Q 021664 170 QATQEEVTILRGRSKLIGDEFQSVRDI 196 (309)
Q Consensus 170 ~~i~~eV~~v~~dl~~ig~Dv~~v~~~ 196 (309)
..++.||..+|+.++....+++.+++-
T Consensus 30 ~~Lq~Ev~~LRGqiE~~~~~l~ql~~r 56 (83)
T 2xdj_A 30 SDNQSDIDSLRGQIQENQYQLNQVVER 56 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 345566666666666666666665543
No 73
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=61.92 E-value=86 Score=27.78 Aligned_cols=84 Identities=15% Similarity=0.193 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH----HHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhh
Q 021664 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE----VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (309)
Q Consensus 137 LeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~e----V~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (309)
||.==+.+...-++|..++.++...+++.+.=-+..+.+ ++.++..+.......+.++.-++.||-+=|.+|.+--
T Consensus 47 LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R 126 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR 126 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 333344455666778888888888888876666666666 7777777777777778888778888877777776665
Q ss_pred hHhHHHHH
Q 021664 213 ITTLGVKK 220 (309)
Q Consensus 213 ~Tn~GV~~ 220 (309)
++..-+..
T Consensus 127 ~~~~SleD 134 (189)
T 2v71_A 127 ATIMSLED 134 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHhhHHH
Confidence 55554443
No 74
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=61.77 E-value=33 Score=25.05 Aligned_cols=56 Identities=11% Similarity=0.071 Sum_probs=39.7
Q ss_pred HHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhh----hhhHhHHHHHHHHHHHhhc
Q 021664 174 EEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK----QDITTLGVKKLCDRARELE 229 (309)
Q Consensus 174 ~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~k----Qd~Tn~GV~~LC~f~~~~~ 229 (309)
+++..+..++..++.=+..+..+|..=+.-|++||.+ ++.+..|...|-.+..--+
T Consensus 6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk 65 (71)
T 2nps_B 6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQK 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666667778888888888899999887 6666677777766554333
No 75
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=61.58 E-value=27 Score=25.64 Aligned_cols=64 Identities=13% Similarity=0.156 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHH------------HHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHH
Q 021664 137 LEDVYSSISAAQRQLSSKITSVDRDVNKI------------VEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (309)
Q Consensus 137 LeqVs~sL~~aKrhLsqRI~~vD~klde~------------~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~L 200 (309)
|++....+....++|.+.|+.|+..++.. .+...+-+....++..-|..|+.-++..+.....-
T Consensus 10 l~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G~A~~af~~~~~~w~~~~~~~~~~L~~i~~~l~~~~~~y~~~ 85 (94)
T 3fav_B 10 IEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNLARTISEAGQAMAST 85 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444432 33444444444444444444444444444333333
No 76
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=61.57 E-value=46 Score=24.52 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=25.0
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH
Q 021664 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIV 166 (309)
Q Consensus 135 KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~ 166 (309)
.+|+++...+..+...+.+.+++|...++...
T Consensus 11 e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~ 42 (98)
T 3gwk_C 11 EELRSSAQKYTAGSQQVTEVLNLLTQEQAVID 42 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888888887777664
No 77
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=61.51 E-value=56 Score=25.51 Aligned_cols=46 Identities=15% Similarity=0.281 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHH-------hhhchhhhhhhHHHHHHHHHHHHHHHHH
Q 021664 161 DVNKIVEISQATQEEVTI-------LRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (309)
Q Consensus 161 klde~~eis~~i~~eV~~-------v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ 206 (309)
.+++-++=.....+++.+ +.....+...+....+.-+++|=+||+.
T Consensus 28 EieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e~ 80 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRMEE 80 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 444444444444444444 5556666777777777777777666654
No 78
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=61.31 E-value=18 Score=25.71 Aligned_cols=41 Identities=12% Similarity=0.305 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHH
Q 021664 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI 165 (309)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~ 165 (309)
|..+-.+.|-+=|+|+++.....-..+..|||.+..++|+.
T Consensus 3 ~~~dLt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdL 43 (48)
T 3ci9_A 3 TVQDLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDL 43 (48)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34444555555677777777777778888888888877764
No 79
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=60.68 E-value=53 Score=24.94 Aligned_cols=34 Identities=15% Similarity=0.292 Sum_probs=23.6
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHH
Q 021664 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEI 168 (309)
Q Consensus 135 KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~ei 168 (309)
-+|++....|..+.++|...|+.|+..++.....
T Consensus 14 ~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~ 47 (103)
T 4i0x_B 14 DHIEQVTSRARGFKEFVTENLDQLESRAQKLVQS 47 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3566666777777777777777777777766655
No 80
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=60.63 E-value=38 Score=24.29 Aligned_cols=48 Identities=13% Similarity=0.178 Sum_probs=33.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh
Q 021664 133 VARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (309)
Q Consensus 133 v~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~ 184 (309)
.-.+|++++..|...| +++.. ....+++|.++...+.++|..+...+.
T Consensus 8 qD~~Ld~L~~~v~~lk-~la~~---ig~El~~Qn~~Ld~l~~~~d~~~~~l~ 55 (66)
T 1n7s_D 8 MDENLEQVSGIIGNLR-HMALD---MGNEIDTQNRQIDRIMEKADSNKTRID 55 (66)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3457888888877654 45554 467888999988888888766555543
No 81
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=60.26 E-value=1e+02 Score=30.20 Aligned_cols=92 Identities=11% Similarity=0.177 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc------------------hhhhhhhHHHHHHHHHHH
Q 021664 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR------------------SKLIGDEFQSVRDIVQTL 200 (309)
Q Consensus 139 qVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~d------------------l~~ig~Dv~~v~~~V~~L 200 (309)
.+.+.|...++.....|+.|...|++....+..+.+-|..++.. .+.+-+++..+..++...
T Consensus 24 gl~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~ 103 (411)
T 3ghg_C 24 GIADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTH 103 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 35677777788888888888888888877777777777766653 223556666666667777
Q ss_pred HHHHHHhhhhhhhHhHHHHHHHHHHHhhcc
Q 021664 201 ESKLIEIEGKQDITTLGVKKLCDRARELEN 230 (309)
Q Consensus 201 e~Ki~~ie~kQd~Tn~GV~~LC~f~~~~~~ 230 (309)
+..|..++..-+.-+.-|..|-+-+..++.
T Consensus 104 ~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 104 DSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777666666667777766666554
No 82
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=59.98 E-value=33 Score=34.18 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 021664 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQE 174 (309)
Q Consensus 143 sL~~aKrhLsqRI~~vD~klde~~eis~~i~~ 174 (309)
++-..+|.+..+++.+..+ .++++++|..
T Consensus 74 ~ld~~~r~~~~~~~~l~~~---rn~~sk~i~~ 102 (501)
T 1wle_A 74 STWQELRQLREQIRSLEEE---KEAVTEAVRA 102 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3455667777777666554 4455555554
No 83
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=59.93 E-value=61 Score=25.45 Aligned_cols=58 Identities=12% Similarity=0.212 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHH
Q 021664 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (309)
Q Consensus 144 L~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le 201 (309)
+..-=..|+.||+.+...+|...+--...++.+.+.....+.--.++.++++-++-||
T Consensus 42 ~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 42 LEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333344555555555555555444444444444444444444445555554444443
No 84
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=59.61 E-value=47 Score=25.38 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=28.3
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHH
Q 021664 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (309)
Q Consensus 149 rhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~ 194 (309)
..|..||..+...|++...=+...+.|+.-+.+.+.-=-+|+..++
T Consensus 17 ~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elr 62 (72)
T 3cve_A 17 KDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELR 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4467777777777777777777777666555554444444444444
No 85
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=59.61 E-value=39 Score=25.28 Aligned_cols=66 Identities=11% Similarity=0.077 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHH------------HHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHH
Q 021664 137 LEDVYSSISAAQRQLSSKITSVDRDVN------------KIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (309)
Q Consensus 137 LeqVs~sL~~aKrhLsqRI~~vD~kld------------e~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~ 202 (309)
|++....+.....+|.+.++.|+..++ ...+...+-+....+++.-|..|..-+.........-|.
T Consensus 12 l~~~A~~~~~~~~~l~~~l~~l~~~~~~L~~~W~G~A~~af~~~~~~w~~~~~~l~~~L~~i~~~l~~~a~~y~~~d~ 89 (101)
T 3fav_A 12 LAQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEISTNIRQAGVQYSRADE 89 (101)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555554443 334444555555555555555555555555444444333
No 86
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=59.59 E-value=44 Score=23.64 Aligned_cols=24 Identities=13% Similarity=0.311 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhh
Q 021664 166 VEISQATQEEVTILRGRSKLIGDE 189 (309)
Q Consensus 166 ~eis~~i~~eV~~v~~dl~~ig~D 189 (309)
..++.++++-++.++.-++.+..+
T Consensus 65 ~~~shel~tpl~~i~~~~e~l~~~ 88 (114)
T 3zcc_A 65 AGVSHDLRTPLTRIRLATEMMSEQ 88 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCGG
T ss_pred HHhhHHHcChHHHHHHHHHHHHHh
Confidence 445555555555555555544443
No 87
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=59.51 E-value=42 Score=33.81 Aligned_cols=49 Identities=14% Similarity=0.133 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHH
Q 021664 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQS 192 (309)
Q Consensus 144 L~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~ 192 (309)
+..-=.+|-.||.-+++++|.+..-....|..|...+.++.++..||..
T Consensus 109 ~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 109 YGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333456777888889999988877777888777777776666666653
No 88
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=59.02 E-value=61 Score=25.23 Aligned_cols=65 Identities=17% Similarity=0.298 Sum_probs=40.8
Q ss_pred hhHHHHHHHHH---HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHH
Q 021664 124 RSLSDACNSVA---RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (309)
Q Consensus 124 Rnms~Av~sv~---KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~L 200 (309)
++|.+-+.++= ++|-..-.+|.-+|+.|..|+|.|.+.-+ .+..++.++++.-..+
T Consensus 5 ~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e---------------------~l~~El~s~~~~~~r~ 63 (77)
T 2w83_C 5 EFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKD---------------------VLQGELEAVKQAKLKL 63 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---------------------HHHHHHHHHHHHHHHH
Confidence 45555555553 34445566888899999998887766433 2344567888888888
Q ss_pred HHHHHHhhh
Q 021664 201 ESKLIEIEG 209 (309)
Q Consensus 201 e~Ki~~ie~ 209 (309)
+.|+.++|.
T Consensus 64 ~~ri~elEe 72 (77)
T 2w83_C 64 EEKNRELEE 72 (77)
T ss_dssp HHHC-----
T ss_pred HHHHHHHHH
Confidence 888887774
No 89
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=58.13 E-value=64 Score=25.10 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=6.6
Q ss_pred hhhhHHHHHHHHHHhHHH
Q 021664 122 TRRSLSDACNSVARQLED 139 (309)
Q Consensus 122 TKRnms~Av~sv~KqLeq 139 (309)
||--+.=+-+++=+.+|+
T Consensus 24 TKNaLnvvk~DLI~rvdE 41 (77)
T 2w83_C 24 TKNALNIVKNDLIAKVDE 41 (77)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 90
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=57.64 E-value=52 Score=30.12 Aligned_cols=27 Identities=22% Similarity=0.458 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHhhhchhhhhhhHH
Q 021664 165 IVEISQATQEEVTILRGRSKLIGDEFQ 191 (309)
Q Consensus 165 ~~eis~~i~~eV~~v~~dl~~ig~Dv~ 191 (309)
..+++.+++.+|.+.|.++.-.++|++
T Consensus 207 l~~~~~~~~qq~e~f~~~~~p~~e~~~ 233 (273)
T 3s84_A 207 LAELGGHLDQQVEEFRRRVEPYGENFN 233 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHhhHHHHH
Confidence 345668888888888888888777774
No 91
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=57.39 E-value=78 Score=25.89 Aligned_cols=69 Identities=12% Similarity=0.217 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHH
Q 021664 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI 196 (309)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~ 196 (309)
|.|...++.+..-+|+.-+.+...++.-..-|..|.+.+++..+.-..++..+ ++|++-.+|++-=.++
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~i----ReLEq~NDDLER~~R~ 74 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYV----RELEQANDDLERAKRA 74 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhchHHHHHHHH
Confidence 44556666667777777777777777777777777666666555444444433 5666666666655444
No 92
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=56.90 E-value=60 Score=27.39 Aligned_cols=68 Identities=13% Similarity=0.201 Sum_probs=53.6
Q ss_pred HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHH
Q 021664 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKK 220 (309)
Q Consensus 153 qRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~ 220 (309)
.||+.+..+|.+.+.+.+.......++.+.+.....|++.-...+...|.|+..++..=.....-+.-
T Consensus 52 Er~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKs 119 (147)
T 2b9c_A 52 EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKS 119 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777777777778888888888889999999999999999999999999999888765544443433
No 93
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=56.55 E-value=2.3 Score=32.88 Aligned_cols=14 Identities=29% Similarity=0.396 Sum_probs=11.3
Q ss_pred eeeEcCcccceeec
Q 021664 9 TFLVGAGILTSVLA 22 (309)
Q Consensus 9 ~ILvGAG~~GSvl~ 22 (309)
+++||||++|..++
T Consensus 5 V~IIGaGpaGL~aA 18 (336)
T 3kkj_A 5 IAIIGTGIAGLSAA 18 (336)
T ss_dssp EEEECCSHHHHHHH
T ss_pred EEEECcCHHHHHHH
Confidence 68899999987554
No 94
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=56.33 E-value=54 Score=25.39 Aligned_cols=52 Identities=13% Similarity=0.229 Sum_probs=42.3
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 021664 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQE 174 (309)
Q Consensus 123 KRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~ 174 (309)
...|..=|.++-.+|++-...=...|.+|.+=++.+|-|+++..++-..+..
T Consensus 22 N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLak 73 (79)
T 3cvf_A 22 NAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLAR 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3457777888888888888888888899999999999999998888776654
No 95
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=54.77 E-value=66 Score=24.20 Aligned_cols=56 Identities=16% Similarity=0.181 Sum_probs=38.4
Q ss_pred HHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhh----hhhHhHHHHHHHHHHH
Q 021664 171 ATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK----QDITTLGVKKLCDRAR 226 (309)
Q Consensus 171 ~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~k----Qd~Tn~GV~~LC~f~~ 226 (309)
.=.+++..+..++..++.=+..+..+|..=+.-|++||++ ++.+..|...|..+.+
T Consensus 18 eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~ 77 (83)
T 1sfc_B 18 TRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555666666666777777788788889999877 5566677777766553
No 96
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=54.40 E-value=50 Score=24.08 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=20.9
Q ss_pred HHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021664 172 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (309)
Q Consensus 172 i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (309)
-.++|......++.....-..=++.+..||.|+.+.+
T Consensus 25 l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~ 61 (65)
T 3m0d_C 25 LNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQ 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3344544444444443333333777788888877665
No 97
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=54.14 E-value=53 Score=26.79 Aligned_cols=59 Identities=3% Similarity=-0.013 Sum_probs=45.9
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHH
Q 021664 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (309)
Q Consensus 147 aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~ 205 (309)
=|--|.=.||.|-++|+++.|.-.+++.|-.+-..+++........++.-+..|...|.
T Consensus 24 EKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 24 EKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667788999999999999999999999888888877777766666666655555544
No 98
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=53.91 E-value=1.1e+02 Score=26.73 Aligned_cols=13 Identities=0% Similarity=0.115 Sum_probs=4.9
Q ss_pred HHHHHHHHHHhcC
Q 021664 63 AEVSSVQQELSHV 75 (309)
Q Consensus 63 aQV~~LaqEl~~L 75 (309)
.-|+..+.+-..|
T Consensus 73 ~~I~~IA~QTNLL 85 (227)
T 1qu7_A 73 SVIDGIAFQTNIL 85 (227)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 99
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=53.80 E-value=92 Score=26.89 Aligned_cols=21 Identities=5% Similarity=-0.067 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 021664 190 FQSVRDIVQTLESKLIEIEGK 210 (309)
Q Consensus 190 v~~v~~~V~~Le~Ki~~ie~k 210 (309)
++.+++-...|--.+..+|.+
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~k 118 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQK 118 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 100
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=53.57 E-value=27 Score=37.74 Aligned_cols=24 Identities=13% Similarity=0.242 Sum_probs=12.5
Q ss_pred CCCCcchhhhhhhHHHHHHHhhhc
Q 021664 24 EGRLSSVSDAVGGTLKIVSKLIKQ 47 (309)
Q Consensus 24 nGkLsdv~~~lsg~lk~l~k~lk~ 47 (309)
.|+.+-+...+..-|..|++.|..
T Consensus 652 ~~~~~tv~~~f~~~l~~L~~~l~~ 675 (1184)
T 1i84_S 652 KGMFRTVGQLYKEQLTKLMTTLRN 675 (1184)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHh
Confidence 344566666666666666665543
No 101
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=53.39 E-value=1.2e+02 Score=26.61 Aligned_cols=81 Identities=16% Similarity=0.218 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHH
Q 021664 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (309)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~K 203 (309)
+.+.++...+-+.+-+++..|..=|+..+++=+... +...=......|+..++...+..-.|...++..+..||..
T Consensus 58 ~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~----elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe 133 (168)
T 3o0z_A 58 RILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIG----DLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKE 133 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555544432222211110 1111222344555555555566666677777777777766
Q ss_pred HHHhh
Q 021664 204 LIEIE 208 (309)
Q Consensus 204 i~~ie 208 (309)
-..+|
T Consensus 134 ~a~~e 138 (168)
T 3o0z_A 134 KNNLE 138 (168)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 66555
No 102
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=53.31 E-value=27 Score=26.99 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhcC
Q 021664 61 LLAEVSSVQQELSHV 75 (309)
Q Consensus 61 L~aQV~~LaqEl~~L 75 (309)
|..|+..|..+++++
T Consensus 25 l~~q~~~l~~~~~e~ 39 (117)
T 2zqm_A 25 VVQQKQKVQLELTEA 39 (117)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666666655
No 103
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=53.05 E-value=70 Score=26.12 Aligned_cols=21 Identities=10% Similarity=0.319 Sum_probs=9.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhh
Q 021664 188 DEFQSVRDIVQTLESKLIEIE 208 (309)
Q Consensus 188 ~Dv~~v~~~V~~Le~Ki~~ie 208 (309)
..++.++.+...|+.+++..+
T Consensus 95 ~~i~~L~~~~~~L~~~i~~~~ 115 (142)
T 3gp4_A 95 NRIDVMQEALDRLDFKIDNYD 115 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444
No 104
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=53.04 E-value=86 Score=25.05 Aligned_cols=73 Identities=10% Similarity=0.145 Sum_probs=55.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhh-hhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHH
Q 021664 130 CNSVARQLEDVYSSISAAQRQLSSKITSVD-RDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (309)
Q Consensus 130 v~sv~KqLeqVs~sL~~aKrhLsqRI~~vD-~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~ 202 (309)
+...+++|++.-+.|...=..|..+.++|+ +.=++.....+..++-+..++.-.+.....|.-++..++-||.
T Consensus 11 lr~Fa~~L~~F~d~Lq~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e~a~e~vp~L~~~i~vle~ 84 (94)
T 3fx7_A 11 VREFVGHLERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIRVLEE 84 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHhHH
Confidence 456789999999999999999999999998 4445556666666666666666666666667777766666554
No 105
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=52.52 E-value=42 Score=25.71 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=30.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHH---hHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021664 130 CNSVARQLEDVYSSISAAQRQLSS---KITSVDRDVNKIVEISQATQEEVTILR 180 (309)
Q Consensus 130 v~sv~KqLeqVs~sL~~aKrhLsq---RI~~vD~klde~~eis~~i~~eV~~v~ 180 (309)
.++|++ +.++.++|...-.+|.+ ||+.++..|++-.+..+..+.++...+
T Consensus 15 ~~~mgt-i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 15 IEGRGS-LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp ----CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555 77777777776655544 577777777777776666666664443
No 106
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=52.11 E-value=96 Score=25.35 Aligned_cols=74 Identities=15% Similarity=0.207 Sum_probs=52.2
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHH----HHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHH
Q 021664 148 QRQLSSKITSVDRDVNKIVEISQATQE----EVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (309)
Q Consensus 148 KrhLsqRI~~vD~klde~~eis~~i~~----eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (309)
-|.|..+..++.-.+|+.+.=-++-+. .++.++.++.+....-+.++.-++.||-+=|.+|-..-.|..-+-.+
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~ 82 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence 355666666666666555544444443 36777888888888889999999999999999988877776655443
No 107
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=51.20 E-value=1e+02 Score=25.38 Aligned_cols=94 Identities=14% Similarity=0.264 Sum_probs=58.0
Q ss_pred EecccCcCcchhhhhhhHHHHHHHHHHhHHHH-----------HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHH
Q 021664 109 WWKGWKLPDMMFATRRSLSDACNSVARQLEDV-----------YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT 177 (309)
Q Consensus 109 wWKGws~SDlMfVTKRnms~Av~sv~KqLeqV-----------s~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~ 177 (309)
+.-+-+.-|=+|+-|.-..++++.+-.-..+- ++.+..++++|..-|+.+.+.|++..+...-+..+=
T Consensus 19 ~~~~ms~~DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np- 97 (130)
T 4dnd_A 19 YFQSMSLEDPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANP- 97 (130)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-
T ss_pred eeecCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH-
Confidence 34456677999998888888887776655542 124677888888888888888888777766554332
Q ss_pred Hhhhchhhhh---hhHHHHHHHHHHHHHHHHHhhh
Q 021664 178 ILRGRSKLIG---DEFQSVRDIVQTLESKLIEIEG 209 (309)
Q Consensus 178 ~v~~dl~~ig---~Dv~~v~~~V~~Le~Ki~~ie~ 209 (309)
+.++ .|+..=++.|..++.+|..|+.
T Consensus 98 ------~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~ 126 (130)
T 4dnd_A 98 ------GKFKLPAGDLQERKVFVERMREAVQEMKD 126 (130)
T ss_dssp ------HHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2332 2355555667777777776654
No 108
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=50.90 E-value=8.7 Score=24.21 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=16.2
Q ss_pred HHHHHHHHhhhchhhhhhhHHHH
Q 021664 171 ATQEEVTILRGRSKLIGDEFQSV 193 (309)
Q Consensus 171 ~i~~eV~~v~~dl~~ig~Dv~~v 193 (309)
+.++||.++++.+..+.++++.+
T Consensus 4 qlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHhcc
Confidence 56788888887776666666543
No 109
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=50.49 E-value=36 Score=26.18 Aligned_cols=38 Identities=24% Similarity=0.223 Sum_probs=23.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHH
Q 021664 184 KLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (309)
Q Consensus 184 ~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (309)
..||.+++.=..++..++.|+++...+-..+|.-+..|
T Consensus 47 ~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kl 84 (87)
T 1l4a_D 47 IDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKL 84 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666667777777777776666666555443
No 110
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=50.16 E-value=99 Score=24.88 Aligned_cols=72 Identities=8% Similarity=0.099 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Q 021664 142 SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (309)
Q Consensus 142 ~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (309)
+.+..-|.+|.-.|+++-.-+|+.+.=-+.=...=..+..++..+..|++...-.-..||.|+..+..-=+|
T Consensus 30 d~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~F 101 (119)
T 3ol1_A 30 DQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445666666666666666555422111111123345566667777787777777899999888765443
No 111
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=49.62 E-value=50 Score=31.83 Aligned_cols=65 Identities=9% Similarity=0.132 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHH
Q 021664 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (309)
Q Consensus 144 L~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (309)
+-..+|.+..+++.+.. +.++++++|.. .-+.|.+.+..-+..|..+|..+|....-...-+..+
T Consensus 33 ~~~~~r~~~~~~~~l~~---~~n~~sk~i~~----------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 33 LDREVQELKKRLQEVQT---ERNQVAKRVPK----------APPEEKEALIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHSSS----------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHh----------hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544 34455555542 1112334444444444445554444444444444444
No 112
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=49.25 E-value=90 Score=25.97 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=26.8
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHH
Q 021664 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (309)
Q Consensus 155 I~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ 206 (309)
|+.++..+.+.+.=....+.+..++...++....+++.++.-+..||.++..
T Consensus 84 l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 84 IENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444443334444444445555555555566666666666766653
No 113
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=49.14 E-value=20 Score=33.92 Aligned_cols=58 Identities=3% Similarity=0.096 Sum_probs=28.4
Q ss_pred HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 021664 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (309)
Q Consensus 153 qRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (309)
+++++......+..+....++.+..+.++.++++..+-+.++...+.++.++.+...+
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (487)
T 3oja_A 414 AIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANAT 471 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccH
Confidence 3333333333333333334455555555555555555555555555555555544433
No 114
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=48.37 E-value=60 Score=25.47 Aligned_cols=25 Identities=8% Similarity=0.183 Sum_probs=19.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhh
Q 021664 186 IGDEFQSVRDIVQTLESKLIEIEGK 210 (309)
Q Consensus 186 ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (309)
-..||..=+..|..++.+|..|..+
T Consensus 66 ~~~EI~~Rk~~v~~l~~~i~~lk~~ 90 (95)
T 2c5k_T 66 ENEDVSGREAQVKNIKQQLDALKLR 90 (95)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777788888888888877654
No 115
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=48.34 E-value=32 Score=34.35 Aligned_cols=63 Identities=8% Similarity=0.043 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 021664 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (309)
Q Consensus 144 L~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (309)
|-..+|.+..+++.+..+ .++++++|..- ..-.+|.+.+..++..+..-+..||.++..++.+
T Consensus 38 ld~~~r~~~~~~~~l~~~---rn~~sk~i~~~-k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~ 100 (485)
T 3qne_A 38 EYKEWVKLRFDLDEHNKK---LNSVQKEIGKR-FKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKN 100 (485)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-hcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777766654 44455555432 1223344444455555555555555555555443
No 116
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=47.65 E-value=71 Score=24.54 Aligned_cols=57 Identities=16% Similarity=0.271 Sum_probs=31.6
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHH
Q 021664 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (309)
Q Consensus 148 KrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki 204 (309)
-|+|...++.-++.+|..+-+.++.+-.+..--+--....++....+.....||.|+
T Consensus 5 NKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~ 61 (74)
T 2q6q_A 5 NKELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKL 61 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhc
Confidence 456666666666666666666666666654444333444444455555555554443
No 117
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=47.24 E-value=75 Score=38.68 Aligned_cols=31 Identities=10% Similarity=0.110 Sum_probs=11.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhchhhhhh
Q 021664 158 VDRDVNKIVEISQATQEEVTILRGRSKLIGD 188 (309)
Q Consensus 158 vD~klde~~eis~~i~~eV~~v~~dl~~ig~ 188 (309)
+..++++.++--+..++++.++.+.+.....
T Consensus 2019 ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~ 2049 (3245)
T 3vkg_A 2019 LENAANELKLKQDEIVATITALEKSIATYKE 2049 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 118
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=47.14 E-value=63 Score=24.82 Aligned_cols=55 Identities=9% Similarity=0.143 Sum_probs=27.3
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHH
Q 021664 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (309)
Q Consensus 151 LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~ 205 (309)
.-+-++.|...+..++.+...|.+|+..=-.-|.+|..+++.+..-+..--.|+.
T Consensus 28 qD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~ 82 (87)
T 1l4a_D 28 MENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKAT 82 (87)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555444555555555555544444444443
No 119
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=47.10 E-value=1e+02 Score=37.68 Aligned_cols=98 Identities=5% Similarity=0.144 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHH---HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhh-------hhhhHHHH
Q 021664 124 RSLSDACNSVARQLEDVYSSISAAQRQL---SSKITSVDRDVNKIVEISQATQEEVTILRGRSKL-------IGDEFQSV 193 (309)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhL---sqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~-------ig~Dv~~v 193 (309)
.=+.++++...++|+...+.|++++..| ..+|+.+.++.++..+=.+.+++|+...+.++++ .++|=..=
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW 2089 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRW 2089 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccH
Confidence 3344566666666666666666655543 3555555555555555555556665555555433 23333333
Q ss_pred HHHHHHHHHHHHHhhhhhhhHhHHHHHH
Q 021664 194 RDIVQTLESKLIEIEGKQDITTLGVKKL 221 (309)
Q Consensus 194 ~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (309)
.+.+..|+.++..+-+.-=.+..-|-|+
T Consensus 2090 ~~~~~~l~~~~~~L~GD~LLaaafisY~ 2117 (3245)
T 3vkg_A 2090 EQQSENFNTQMSTVVGDVVLASAFLAYI 2117 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 3344444555554444433333334443
No 120
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=46.79 E-value=40 Score=24.25 Aligned_cols=12 Identities=8% Similarity=0.235 Sum_probs=5.0
Q ss_pred HHHHHhhhchhh
Q 021664 174 EEVTILRGRSKL 185 (309)
Q Consensus 174 ~eV~~v~~dl~~ 185 (309)
.+|..++.|+..
T Consensus 25 sdV~al~~~v~~ 36 (52)
T 1jcd_A 25 NDANAARSDAQA 36 (52)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 121
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=46.21 E-value=1.2e+02 Score=28.52 Aligned_cols=35 Identities=26% Similarity=0.312 Sum_probs=18.3
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021664 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG 181 (309)
Q Consensus 147 aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~ 181 (309)
.|..|...|+.|-..+.+..+-.+.+.+++..-+.
T Consensus 117 d~~~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~ 151 (346)
T 2nrj_A 117 DGETLKEGITDLRGEIQQNQKYAQQLIEELTKLRD 151 (346)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666665555544444444444444333
No 122
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=45.90 E-value=71 Score=26.09 Aligned_cols=29 Identities=7% Similarity=0.110 Sum_probs=13.5
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 021664 148 QRQLSSKITSVDRDVNKIVEISQATQEEV 176 (309)
Q Consensus 148 KrhLsqRI~~vD~klde~~eis~~i~~eV 176 (309)
+.-|..+++.++.++++..++.+.++..+
T Consensus 83 ~~~L~~~~~~l~~~i~~L~~~~~~L~~~i 111 (142)
T 3gp4_A 83 AELLKKQRIELKNRIDVMQEALDRLDFKI 111 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444
No 123
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=45.82 E-value=1.2e+02 Score=24.78 Aligned_cols=65 Identities=12% Similarity=0.121 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHH
Q 021664 136 QLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (309)
Q Consensus 136 qLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~L 200 (309)
|.+++...+..+++.|+.=.+--++=-|..++-.+..+.+|.++.+.+.+-...+..++..+...
T Consensus 7 ~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~ 71 (112)
T 1x79_B 7 QVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQA 71 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555566555544444444455666677777788887777777777777777665544
No 124
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=45.79 E-value=1.9e+02 Score=27.92 Aligned_cols=38 Identities=11% Similarity=0.210 Sum_probs=29.7
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhh
Q 021664 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITS 157 (309)
Q Consensus 120 fVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~ 157 (309)
|-.|+.+.+....+-|.|......|..+|+...++-..
T Consensus 128 ~kerK~~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~cke 165 (486)
T 3haj_A 128 FKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKE 165 (486)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577888888888888999999999999888665443
No 125
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=45.57 E-value=79 Score=23.08 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=16.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhH
Q 021664 185 LIGDEFQSVRDIVQTLESKLIEIEGKQDITTL 216 (309)
Q Consensus 185 ~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~ 216 (309)
.+|.++++=+.++..++.|.+.+..+=..++.
T Consensus 28 ~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~ 59 (64)
T 3b5n_D 28 TTGKELDSQQKRLNNIEESTDDLDINLHMNTN 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555444443
No 126
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=45.17 E-value=87 Score=24.09 Aligned_cols=23 Identities=9% Similarity=0.244 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhh
Q 021664 136 QLEDVYSSISAAQRQLSSKITSV 158 (309)
Q Consensus 136 qLeqVs~sL~~aKrhLsqRI~~v 158 (309)
.|.++.+.|..+|.-+..-||.+
T Consensus 6 ~l~~vq~ev~evk~iM~~NI~kv 28 (91)
T 3hd7_A 6 RLQQTQAQVDEVVDIMRVNVDKV 28 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555444444444
No 127
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=44.98 E-value=62 Score=24.05 Aligned_cols=61 Identities=11% Similarity=0.145 Sum_probs=39.3
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHH--------HHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 021664 150 QLSSKITSVDRDVNKIVEISQATQ--------EEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (309)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~--------~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (309)
++..++..++=.|++.+++...-. +-...++..+..+...++.++.+...|+.++...+..
T Consensus 7 ~~I~~lr~lGfsL~eIk~~l~~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~~~ 75 (99)
T 1q08_A 7 KFIRHARQLGFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDACCGT 75 (99)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345566667777777777765321 2234455566667777777777777777777777654
No 128
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=44.93 E-value=85 Score=22.63 Aligned_cols=50 Identities=16% Similarity=0.168 Sum_probs=32.6
Q ss_pred HHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhh----hHhHHHHHHH
Q 021664 173 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD----ITTLGVKKLC 222 (309)
Q Consensus 173 ~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd----~Tn~GV~~LC 222 (309)
.+++..+..++..++.=+..+..+|..=+..|++||++-+ .+..|...|-
T Consensus 11 ~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~ 64 (68)
T 1n7s_B 11 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTK 64 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666677777778777888899988744 4445555443
No 129
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=44.80 E-value=43 Score=25.42 Aligned_cols=15 Identities=7% Similarity=0.277 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhcC
Q 021664 61 LLAEVSSVQQELSHV 75 (309)
Q Consensus 61 L~aQV~~LaqEl~~L 75 (309)
+..|+..|..+++++
T Consensus 20 l~~q~~~l~~~~~e~ 34 (107)
T 1fxk_A 20 ISVQKQTVEMQINET 34 (107)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666666665
No 130
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=44.19 E-value=1.5e+02 Score=25.21 Aligned_cols=79 Identities=14% Similarity=0.131 Sum_probs=47.2
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH-----------------HHHhhhchhh
Q 021664 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE-----------------VTILRGRSKL 185 (309)
Q Consensus 123 KRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~e-----------------V~~v~~dl~~ 185 (309)
|+.+..-+.-+.++|+...+++..-...+.++|...|+++|+...-...---. +..+-.|+++
T Consensus 13 ~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~V~~~d~~iD~l~~~I~~~~~~lla~~qp~a~dlr~i~~~l~i~~dlER 92 (235)
T 1sum_B 13 KKGVLKAGWFIEKMFRNSISSLVERNESLAREVIADEEVVDQMEVEIQEKAMEVLGLFSPIGKPLLTVTAGIRVAELIEN 92 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHH
Confidence 45555566666677777777776666677788888887777654332211111 1233466777
Q ss_pred hhhhHHHHHHHHHHHH
Q 021664 186 IGDEFQSVRDIVQTLE 201 (309)
Q Consensus 186 ig~Dv~~v~~~V~~Le 201 (309)
||+-..+|-..+..+.
T Consensus 93 IgD~a~~Ia~~~~~~~ 108 (235)
T 1sum_B 93 IADKCHDIAKNVLELM 108 (235)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7776666655555443
No 131
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=44.07 E-value=50 Score=32.29 Aligned_cols=62 Identities=10% Similarity=0.092 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021664 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (309)
Q Consensus 144 L~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (309)
|-..+|.+..+++.+..+ .++++++|..- ..-.++.+.+..++..+..-+..||.++..++.
T Consensus 36 l~~~~r~~~~~~~~l~~~---~n~~sk~i~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 97 (455)
T 2dq0_A 36 LDTEWRTKLKEINRLRHE---RNKIAVEIGKR-RKKGEPVDELLAKSREIVKRIGELENEVEELKK 97 (455)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHh-hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666666544 44555555531 111233344444444444444444444444443
No 132
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}
Probab=43.89 E-value=15 Score=26.76 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=19.6
Q ss_pred eeEEecccCcCcchhhhhhhHH
Q 021664 106 GYVWWKGWKLPDMMFATRRSLS 127 (309)
Q Consensus 106 gYmwWKGws~SDlMfVTKRnms 127 (309)
-++.|||+.-+|-.|-...||.
T Consensus 18 YlVKWkGy~~~~~TWEp~~nl~ 39 (64)
T 3mts_A 18 YLVKWRGYPDSESTWEPRQNLK 39 (64)
T ss_dssp EEEEETTSCGGGCEEEEGGGCC
T ss_pred EEEEEecCCCcCCcEeEHHHCC
Confidence 3688999999999999999994
No 133
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=43.60 E-value=77 Score=24.49 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=27.6
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhh
Q 021664 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (309)
Q Consensus 152 sqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (309)
.+|++++...++......-.+..++ +....||..++-.++.+..+|..+...|.
T Consensus 5 e~rv~~LEr~~~~~~q~~~~Lq~Ql-------~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQr 58 (83)
T 2xdj_A 5 EDRVTQLERISNAHSQLLTQLQQQL-------SDNQSDIDSLRGQIQENQYQLNQVVERQK 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4566665544444333334444444 44444455555555555566666655543
No 134
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=43.29 E-value=41 Score=26.39 Aligned_cols=54 Identities=17% Similarity=0.228 Sum_probs=35.2
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021664 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG 181 (309)
Q Consensus 121 VTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~ 181 (309)
-++.-+.+.|..+.-.|+.+.++|...++. =...++.=+...+.++.++..++.
T Consensus 36 ~~~~El~~~l~el~e~l~DL~~SI~i~e~~-------~~~EI~~Rk~~v~~l~~~i~~lk~ 89 (95)
T 2c5k_T 36 DQEEEIQDILKDVEETIVDLDRSIIVMKRD-------ENEDVSGREAQVKNIKQQLDALKL 89 (95)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTS-------TTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888999999999999999999986655 222333334444444444444443
No 135
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=42.97 E-value=42 Score=23.30 Aligned_cols=30 Identities=10% Similarity=0.382 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHHHHHHH
Q 021664 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEI 168 (309)
Q Consensus 139 qVs~sL~~aKrhLsqRI~~vD~klde~~ei 168 (309)
.+-+.+.+-...|..||..+..|||...+.
T Consensus 9 dlvsel~~r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 9 DMISDLNERSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 445567777888999999999999987664
No 136
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=42.71 E-value=1.7e+02 Score=29.59 Aligned_cols=79 Identities=19% Similarity=0.291 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhHHHHH------------HHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHH
Q 021664 126 LSDACNSVARQLEDVY------------SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSV 193 (309)
Q Consensus 126 ms~Av~sv~KqLeqVs------------~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v 193 (309)
..++-..+-++|.++. +....-++++.+|++. ++..+..++++=+..-+..-.++..+.+.+
T Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~i~~~~~~l~~~~~~~~~~~~~~~~~~~~l 667 (695)
T 2j69_A 594 VKTAKKELVKHLPQVAHEQSQVVYNAVKECFDSYEREVSKRIND------DIVSRKSELDNLVKQKQTREINRESEFNRL 667 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3444555666665544 3333444455444432 233344444444555555666677777777
Q ss_pred HHHHHHHHHHHHHhhhh
Q 021664 194 RDIVQTLESKLIEIEGK 210 (309)
Q Consensus 194 ~~~V~~Le~Ki~~ie~k 210 (309)
+.+..+.-.+|..++..
T Consensus 668 ~~~~~~~~~~~~~~~~~ 684 (695)
T 2j69_A 668 KNLQEDVIAQLQKIEAA 684 (695)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 77666677777776653
No 137
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=42.45 E-value=63 Score=23.23 Aligned_cols=43 Identities=12% Similarity=0.180 Sum_probs=29.6
Q ss_pred HHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhH
Q 021664 174 EEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTL 216 (309)
Q Consensus 174 ~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~ 216 (309)
+++..+..++..++.=+..+..+|..=+..|++||++-+-|..
T Consensus 9 ~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 51 (65)
T 1gl2_B 9 SSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEV 51 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666666777778888888889999887554443
No 138
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=41.98 E-value=1.3e+02 Score=29.99 Aligned_cols=35 Identities=14% Similarity=0.349 Sum_probs=26.7
Q ss_pred cCcchhhhhhhHHHHHHHHHHhHHHHHHHHHHHHH
Q 021664 115 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQR 149 (309)
Q Consensus 115 ~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKr 149 (309)
+.|+|.==.++..+-+..|-..|++++.+=+.|+.
T Consensus 82 lad~L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~ 116 (461)
T 3ghg_B 82 LQEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQ 116 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcccchhhHHHHHHHHHHHHHhhhHHHHH
Confidence 56788877888888888888888888766555543
No 139
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=40.41 E-value=1e+02 Score=22.30 Aligned_cols=52 Identities=15% Similarity=0.143 Sum_probs=34.4
Q ss_pred HHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhh----hhhHhHHHHHHHHH
Q 021664 173 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK----QDITTLGVKKLCDR 224 (309)
Q Consensus 173 ~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~k----Qd~Tn~GV~~LC~f 224 (309)
.+++..+..++..++.=+..+..+|..=+..|++||++ ++.+..|...|-.+
T Consensus 9 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA 64 (69)
T 3b5n_B 9 HQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKA 64 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666777777787778888888877 44555566555443
No 140
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=40.17 E-value=1.1e+02 Score=25.31 Aligned_cols=45 Identities=11% Similarity=0.171 Sum_probs=30.9
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHH
Q 021664 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVE 167 (309)
Q Consensus 123 KRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~e 167 (309)
|+.+..-+..+.++|+...+++..-...+.++|...|+++|+...
T Consensus 13 ~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~v~~~d~~iD~l~~ 57 (216)
T 2i0m_A 13 EQSFLGLGQLVLETASKALLALASKDKEMAELIINKDHAINQGQS 57 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHH
Confidence 455556666667777777777766566777788877777776543
No 141
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=39.75 E-value=1.9e+02 Score=27.68 Aligned_cols=59 Identities=14% Similarity=0.233 Sum_probs=38.9
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 021664 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (309)
Q Consensus 121 VTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v 179 (309)
+.|..+-..-..++.++.++++.|...++.+..+|+.--++++...+-+..+.+++..+
T Consensus 64 ~~R~~vl~~a~~La~~~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~~~ 122 (463)
T 2d4y_A 64 AARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISRM 122 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777778888888888887777777776665555555555555555555443
No 142
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=39.58 E-value=1.1e+02 Score=23.94 Aligned_cols=21 Identities=10% Similarity=0.278 Sum_probs=8.5
Q ss_pred HHHHHHHHhhhchhhhhhhHH
Q 021664 171 ATQEEVTILRGRSKLIGDEFQ 191 (309)
Q Consensus 171 ~i~~eV~~v~~dl~~ig~Dv~ 191 (309)
.|.+|++.+|.+.-.+.++++
T Consensus 28 ~i~EELs~vr~~ni~~eskL~ 48 (81)
T 1wt6_A 28 SLSREMEAIRTDNQNFASQLR 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443333333
No 143
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=39.20 E-value=49 Score=31.91 Aligned_cols=63 Identities=11% Similarity=0.254 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 021664 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (309)
Q Consensus 144 L~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (309)
+-..+|.+..+++.+..+ .++++++|..- ..-.++.+.+..++..+..-+..||.++..++.+
T Consensus 35 ~~~~~r~~~~~~~~l~~~---~n~~sk~i~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 97 (425)
T 2dq3_A 35 LDKRRREIIKRLEALRSE---RNKLSKEIGKL-KREGKDTTEIQNRVKELKEEIDRLEEELRKVEEE 97 (425)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHTTGG-GSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-hhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666676666666543 45556655431 1112455566666666666666666666666654
No 144
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=38.55 E-value=1.5e+02 Score=28.92 Aligned_cols=88 Identities=9% Similarity=0.043 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHH-H---HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh---hhhhhHHHHHHHHHHHHHHHHHhh
Q 021664 136 QLEDVYSSISAAQR-Q---LSSKITSVDRDVNKIVEISQATQEEVTILRGRSK---LIGDEFQSVRDIVQTLESKLIEIE 208 (309)
Q Consensus 136 qLeqVs~sL~~aKr-h---LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~---~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (309)
+.|.|-++++.=.. . +-.+|-.+|.+-.+...-.++++.+-+.+...+. .-+.|.+.+..-+..|..+|..+|
T Consensus 10 n~~~~~~~~~~R~~~~~~~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 89 (455)
T 2dq0_A 10 NPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELE 89 (455)
T ss_dssp CHHHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 45555555543211 1 2345555555555555555555555555544443 235778888888889999999998
Q ss_pred hhhhhHhHHHHHHHH
Q 021664 209 GKQDITTLGVKKLCD 223 (309)
Q Consensus 209 ~kQd~Tn~GV~~LC~ 223 (309)
....-...-+..+..
T Consensus 90 ~~~~~~~~~~~~~~~ 104 (455)
T 2dq0_A 90 NEVEELKKKIDYYLW 104 (455)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 888777776666643
No 145
>3e7k_A TRPM7 channel; coiled-coil, antiparallel, ION channel, assembly domain, Trp channel, membrane protein; 2.01A {Rattus norvegicus}
Probab=38.54 E-value=1.2e+02 Score=22.34 Aligned_cols=46 Identities=17% Similarity=0.347 Sum_probs=37.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 021664 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (309)
Q Consensus 127 s~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV 176 (309)
++=++.|.-+|+.|.+.+...|+.| ..||.++-+.++++..+-+-.
T Consensus 8 ~eRve~m~~~l~Evnekv~~ik~sL----~~LD~~lg~Lqdlsal~v~tL 53 (56)
T 3e7k_A 8 FERVEQMSIQIKEVGDRVNYIKRSL----QSLDSQIGHLQDLSALTVDTL 53 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHH
Confidence 4558889999999999999999854 578889988888888775543
No 146
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=38.14 E-value=1e+02 Score=24.77 Aligned_cols=21 Identities=14% Similarity=0.507 Sum_probs=10.2
Q ss_pred HHHHHHHHhHhhhhhhHHHHH
Q 021664 146 AAQRQLSSKITSVDRDVNKIV 166 (309)
Q Consensus 146 ~aKrhLsqRI~~vD~klde~~ 166 (309)
.++++|...|++++.+++...
T Consensus 47 ~t~~eL~~EI~~L~~eI~~LE 67 (96)
T 1t3j_A 47 MTQKHLEEEIARLSKEIDQLE 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555444433
No 147
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=38.13 E-value=2.2e+02 Score=28.50 Aligned_cols=11 Identities=9% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHhcC
Q 021664 65 VSSVQQELSHV 75 (309)
Q Consensus 65 V~~LaqEl~~L 75 (309)
+.+=++|.-.+
T Consensus 19 ~~~~~~~~~~~ 29 (461)
T 3ghg_B 19 LDKKREEAPSL 29 (461)
T ss_dssp -----------
T ss_pred cccccCCCCCC
Confidence 34444444444
No 148
>1xwj_B Talin, metavinculin; cell adhesion/protein binding complex; 2.60A {Gallus gallus} PDB: 1rkc_B
Probab=37.91 E-value=23 Score=21.82 Aligned_cols=24 Identities=17% Similarity=0.451 Sum_probs=19.6
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHH
Q 021664 122 TRRSLSDACNSVARQLEDVYSSIS 145 (309)
Q Consensus 122 TKRnms~Av~sv~KqLeqVs~sL~ 145 (309)
|+|-+++++..|+.++.+|-++|.
T Consensus 2 ~q~el~~~~r~v~ekV~~vlaaLq 25 (26)
T 1xwj_B 2 TKKELIESARKVSEKVSHVLAALQ 25 (26)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhh
Confidence 688899999999999988877663
No 149
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=37.81 E-value=1.4e+02 Score=22.97 Aligned_cols=22 Identities=9% Similarity=0.191 Sum_probs=9.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHH
Q 021664 131 NSVARQLEDVYSSISAAQRQLS 152 (309)
Q Consensus 131 ~sv~KqLeqVs~sL~~aKrhLs 152 (309)
..+-.++++|-..+...=..+-
T Consensus 8 ~~vq~ev~evk~iM~~NI~kvL 29 (91)
T 3hd7_A 8 QQTQAQVDEVVDIMRVNVDKVL 29 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433333
No 150
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=37.18 E-value=87 Score=23.68 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=10.8
Q ss_pred hhhHHHHHHHHHHhHHHHH
Q 021664 123 RRSLSDACNSVARQLEDVY 141 (309)
Q Consensus 123 KRnms~Av~sv~KqLeqVs 141 (309)
++...+|...+.+..+.+.
T Consensus 60 ~~~~~e~~~~L~~~~e~i~ 78 (107)
T 1fxk_A 60 RVAKDELTEELQEKLETLQ 78 (107)
T ss_dssp EECHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHH
Confidence 4466666666655555444
No 151
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=37.08 E-value=1e+02 Score=30.76 Aligned_cols=23 Identities=9% Similarity=-0.013 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHH
Q 021664 143 SISAAQRQLSSKITSVDRDVNKI 165 (309)
Q Consensus 143 sL~~aKrhLsqRI~~vD~klde~ 165 (309)
+|-..+|.+..+++.+..+.++.
T Consensus 41 ~ld~~~r~~~~~~~~l~~~rN~~ 63 (484)
T 3lss_A 41 EADKKWRRTQFLTEASKKLINIC 63 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566788888887777655443
No 152
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=37.06 E-value=99 Score=23.67 Aligned_cols=18 Identities=11% Similarity=0.311 Sum_probs=8.7
Q ss_pred hhhHHHHHHHHHHhHHHH
Q 021664 123 RRSLSDACNSVARQLEDV 140 (309)
Q Consensus 123 KRnms~Av~sv~KqLeqV 140 (309)
++...+|...+.+..+.+
T Consensus 65 ~~~~~ea~~~L~~~~e~i 82 (117)
T 2zqm_A 65 KTTKDKAVAELKEKIETL 82 (117)
T ss_dssp EECHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHH
Confidence 345555555544444433
No 153
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=37.06 E-value=1.2e+02 Score=23.92 Aligned_cols=45 Identities=11% Similarity=0.095 Sum_probs=19.6
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHH
Q 021664 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT 199 (309)
Q Consensus 155 I~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~ 199 (309)
|.++...+.|..++-..+..-|.+=.+-+.+|...++....-|+.
T Consensus 23 I~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~ 67 (109)
T 3hd7_B 23 IIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVER 67 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444433333
No 154
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=36.90 E-value=2.9e+02 Score=27.01 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=7.1
Q ss_pred hhHHHHHHHHHHhHHH
Q 021664 124 RSLSDACNSVARQLED 139 (309)
Q Consensus 124 Rnms~Av~sv~KqLeq 139 (309)
..|++..+++|.|-||
T Consensus 204 ~elA~~L~SLT~HyDq 219 (413)
T 4hpq_C 204 QELADFLKSFTDHFDK 219 (413)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 155
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=36.90 E-value=75 Score=25.19 Aligned_cols=60 Identities=13% Similarity=0.227 Sum_probs=28.0
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021664 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (309)
Q Consensus 148 KrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (309)
|+.|.++|+.+...+++-..-.+.+.+=...-..+ .++| |-.+++.-......||+.++.
T Consensus 17 kkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~n-P~~G-D~~s~~~~L~e~~~kid~L~~ 76 (98)
T 2ke4_A 17 RKRLQQQLEERSRELQKEVDQREALKKMKDVYEKT-PQMG-DPASLEPQIAETLSNIERLKL 76 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHC-GGGC-CGGGSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CccC-CHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666665555444433333322222222 3444 444444444444444444443
No 156
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=36.68 E-value=1.9e+02 Score=26.28 Aligned_cols=38 Identities=18% Similarity=0.290 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHhHHHHHHHHH-HHHHHHHHhHhhhhhhH
Q 021664 125 SLSDACNSVARQLEDVYSSIS-AAQRQLSSKITSVDRDV 162 (309)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~-~aKrhLsqRI~~vD~kl 162 (309)
+..+.+..+.++++++.+.+- ..+++...||-.+.+++
T Consensus 168 ~~~~~l~~l~~~i~~lE~~l~~~~~~~~l~~l~~lrr~l 206 (339)
T 4ev6_A 168 SYSRILMNLEDELEELEDKLLAGYDREVMEKILGLRKTL 206 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Confidence 344555555566665554432 12333344444444443
No 157
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=36.32 E-value=80 Score=25.86 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=10.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhh
Q 021664 186 IGDEFQSVRDIVQTLESKLIEIE 208 (309)
Q Consensus 186 ig~Dv~~v~~~V~~Le~Ki~~ie 208 (309)
+...++.++.+...|+.+|+..+
T Consensus 107 l~~~i~~L~~~~~~L~~~i~~~~ 129 (148)
T 3gpv_A 107 VLQLIQDTEKNLKKIQQKIAKYE 129 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555555555444
No 158
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=36.00 E-value=69 Score=26.99 Aligned_cols=31 Identities=16% Similarity=0.146 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhhHHH
Q 021664 162 VNKIVEISQATQEEVTILRGRSKLIGDEFQS 192 (309)
Q Consensus 162 lde~~eis~~i~~eV~~v~~dl~~ig~Dv~~ 192 (309)
|.+.+++++++.++|..+..++++|-.|..+
T Consensus 4 l~~i~~ei~e~~~~i~~l~~~Ik~il~~~~s 34 (129)
T 3f6n_A 4 LNQIQKEVSEILSDQKSMKADIKAILELLGS 34 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4566666777777777777777777776666
No 159
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=36.00 E-value=1.6e+02 Score=27.45 Aligned_cols=39 Identities=10% Similarity=0.171 Sum_probs=29.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHH
Q 021664 183 SKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (309)
Q Consensus 183 l~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (309)
+.....|++.+...|.+|+..|.++..=----.+|+.+|
T Consensus 381 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 419 (463)
T 2xz3_A 381 IHVLEQDQQRLITAINQTHYNLLNVASVVAQNRRGLDWL 419 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHH
Confidence 466778888888889999999988776544455677766
No 160
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=35.86 E-value=1.7e+02 Score=23.40 Aligned_cols=45 Identities=29% Similarity=0.483 Sum_probs=36.5
Q ss_pred hhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHh
Q 021664 179 LRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARE 227 (309)
Q Consensus 179 v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~ 227 (309)
.+.-+..||+|+-.|+.....||--+. .|.-++.-..-||.+.++
T Consensus 35 lk~~L~Kig~Ei~~l~eLLn~~E~eV~----~Qe~~~~sLKEL~~s~e~ 79 (91)
T 4aj5_A 35 LKTVLNKIGDEIIVINELLNKLELEIQ----YQEQTNNSLKELCESLEE 79 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 345578899999999988888887664 588899999999998864
No 161
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=35.46 E-value=1.5e+02 Score=22.62 Aligned_cols=60 Identities=17% Similarity=0.220 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHH
Q 021664 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (309)
Q Consensus 139 qVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~ 205 (309)
.+-.+|+.+..++...++ +..........++..+|.++...-.|-+.+-++=..||--|.
T Consensus 14 ~Le~~l~e~E~~~~~~l~-------~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIa 73 (86)
T 1x8y_A 14 AKEAKLRDLEDSLARERD-------TSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIH 73 (86)
T ss_dssp THHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 334455555554444333 334444445666777777777776677766666666665553
No 162
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=35.37 E-value=2.3e+02 Score=24.79 Aligned_cols=14 Identities=0% Similarity=0.209 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHhcC
Q 021664 62 LAEVSSVQQELSHV 75 (309)
Q Consensus 62 ~aQV~~LaqEl~~L 75 (309)
..+++.|.+..+++
T Consensus 55 ~~~~~~l~~~s~~I 68 (227)
T 1qu7_A 55 VQTMRDISTSSQKI 68 (227)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 163
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=35.30 E-value=1.5e+02 Score=22.57 Aligned_cols=65 Identities=12% Similarity=0.257 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHH-----HHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021664 143 SISAAQRQLSSKITSVDRDVNKIVEISQAT-----QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (309)
Q Consensus 143 sL~~aKrhLsqRI~~vD~klde~~eis~~i-----~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (309)
.|..+..-|.++...++.+++++.++.+.- +.-...++.+ ......++.+.....+||.-+..||
T Consensus 10 ~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~~knK~~Al~aLkrK-K~~E~qL~q~~~ql~~LE~q~~~iE 79 (79)
T 4abm_A 10 RLRDTEEMLSKKQEFLEKKIEQELTAAKKHGTKNKRAALQALKRK-KRYEKQLAQIDGTLSTIEFQREALE 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344555556666667777776666665531 1123333333 3444555666666666666555554
No 164
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=35.26 E-value=1.2e+02 Score=21.53 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhhh
Q 021664 137 LEDVYSSISAAQRQLSSKITSV 158 (309)
Q Consensus 137 LeqVs~sL~~aKrhLsqRI~~v 158 (309)
|.+|...|..+|.-+..-|+.|
T Consensus 4 l~~vq~~l~evk~iM~~NI~~v 25 (61)
T 3b5n_A 4 TAELQAEIDDTVGIMRDNINKV 25 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555444444443
No 165
>4ack_A TSSL; protein transport, microbial surface structures, virul factor; 2.15A {Francisella novicida} PDB: 4acl_A
Probab=35.22 E-value=1.1e+02 Score=27.33 Aligned_cols=65 Identities=18% Similarity=0.201 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHh
Q 021664 162 VNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARE 227 (309)
Q Consensus 162 lde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~ 227 (309)
++-..+|.+.|++-+.+-+-|-++|..-=.+|+++|..+-.+|.. ...+..--.-++.+|.|+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ir~~I~~~re~L~~-gysE~~~~~ilFAlcAlIDE 71 (185)
T 4ack_A 7 IEIILDIIKTTREIIEDNDNDNEKISYHRNNIRKSIFFLQEELLE-KYSETVCKYIVFPLLAYVDE 71 (185)
T ss_dssp HHHHHHHHHHHHHHTC---CCTTHHHHHHHHHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHhHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHH
Confidence 344567888888888888888888888888899998888888887 77777777788999998863
No 166
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=35.11 E-value=59 Score=30.83 Aligned_cols=8 Identities=38% Similarity=0.609 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 021664 197 VQTLESKL 204 (309)
Q Consensus 197 V~~Le~Ki 204 (309)
+..|+.+|
T Consensus 42 i~~l~~~i 49 (323)
T 1lwu_C 42 VTRLQQQL 49 (323)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 167
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=34.49 E-value=1.9e+02 Score=25.55 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=17.8
Q ss_pred hhhhhHHHH-HHHHHHHHHHHHHhhhchhhhhhhH
Q 021664 157 SVDRDVNKI-VEISQATQEEVTILRGRSKLIGDEF 190 (309)
Q Consensus 157 ~vD~klde~-~eis~~i~~eV~~v~~dl~~ig~Dv 190 (309)
.+-.+|.-- .|+.+.+.+++.++|..++-+..++
T Consensus 92 e~r~~l~Py~~el~~~~~~~~eelr~~L~P~~eel 126 (243)
T 2a01_A 92 EVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAEL 126 (243)
T ss_dssp CSSTTHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 455555433 2355555555556665555555554
No 168
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=34.45 E-value=1.7e+02 Score=23.59 Aligned_cols=30 Identities=17% Similarity=0.270 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhHHH---HHHHHHHHHHHHHHhH
Q 021664 126 LSDACNSVARQLED---VYSSISAAQRQLSSKI 155 (309)
Q Consensus 126 ms~Av~sv~KqLeq---Vs~sL~~aKrhLsqRI 155 (309)
|+|-.+++-..|+. -.+.|...|++|..-+
T Consensus 2 lan~La~le~sLe~EK~S~eeL~kQk~eL~~~l 34 (101)
T 1d7m_A 2 MANRLAGLENSLESEKVSREQLIKQKDQLNSLL 34 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHhhhhhccHHHHHHHHHHHHHHH
Confidence 44555555444443 2344555555554433
No 169
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=34.17 E-value=2e+02 Score=23.87 Aligned_cols=79 Identities=9% Similarity=0.178 Sum_probs=45.5
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHH-----HHHH------HH------HHHhhhchhh
Q 021664 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEIS-----QATQ------EE------VTILRGRSKL 185 (309)
Q Consensus 123 KRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis-----~~i~------~e------V~~v~~dl~~ 185 (309)
++.+..-+..+.+.|+...+++..-...+..+|...|+++|+...-. +.+. .+ +..+-.++++
T Consensus 17 ~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~v~~~d~~iD~l~~~i~~~~~~~l~~~~~~~~d~~~~~~~l~i~~~lER 96 (227)
T 1t72_A 17 KEQVIKMAKLVQEAIDKATEALNKQNVELAEEVIKGDDTIDLLEVDIERRCIRMIALYQPEAGDLRMIMGIYKIVSDLER 96 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 44555555566666777777776555667777777777777653221 1111 01 2224467777
Q ss_pred hhhhHHHHHHHHHHHH
Q 021664 186 IGDEFQSVRDIVQTLE 201 (309)
Q Consensus 186 ig~Dv~~v~~~V~~Le 201 (309)
||+-..+|-..+..+.
T Consensus 97 IgD~a~nIa~~~~~~~ 112 (227)
T 1t72_A 97 MGDEAENIAERAILLA 112 (227)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7777666665555443
No 170
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=33.85 E-value=44 Score=29.07 Aligned_cols=21 Identities=14% Similarity=0.131 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhh
Q 021664 192 SVRDIVQTLESKLIEIEGKQD 212 (309)
Q Consensus 192 ~v~~~V~~Le~Ki~~ie~kQd 212 (309)
+.+..+..|.+-+.+...++|
T Consensus 104 k~~a~~~q~~~d~~~~~~~~~ 124 (158)
T 3tul_A 104 QAEAAVEQAGKEATEAKEALD 124 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444455554444444443
No 171
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=33.68 E-value=8.8 Score=33.51 Aligned_cols=14 Identities=36% Similarity=0.387 Sum_probs=11.2
Q ss_pred eeeEcCcccceeec
Q 021664 9 TFLVGAGILTSVLA 22 (309)
Q Consensus 9 ~ILvGAG~~GSvl~ 22 (309)
+++||||++|..++
T Consensus 7 ViIVGaGpaGl~~A 20 (397)
T 3oz2_A 7 VLVVGGGPGGSTAA 20 (397)
T ss_dssp EEEECCSHHHHHHH
T ss_pred EEEECcCHHHHHHH
Confidence 68999999987543
No 172
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=33.67 E-value=73 Score=22.51 Aligned_cols=38 Identities=16% Similarity=0.413 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHh----HHHHHHHHHHHHHHHHHhHhhhhhhH
Q 021664 125 SLSDACNSVARQ----LEDVYSSISAAQRQLSSKITSVDRDV 162 (309)
Q Consensus 125 nms~Av~sv~Kq----LeqVs~sL~~aKrhLsqRI~~vD~kl 162 (309)
-|..+|..+=.| .+.+|+.|-.-=.+++.|||.|+..+
T Consensus 6 dLt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE~si 47 (48)
T 3ci9_A 6 DLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDLEKNI 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 355555554444 45677777777788889998887765
No 173
>1fzc_A Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: h.1.8.1 PDB: 1fzb_A* 1fza_A* 1fze_A* 1fzf_A* 1fzg_A* 1n86_A* 2h43_A* 2hlo_A* 2hod_A* 2hpc_A* 2q9i_A* 2xnx_A 2xny_A 2z4e_A* 3e1i_A* 1n8e_A 2oyh_A* 1ltj_A* 1lt9_A* 1re4_A* ...
Probab=33.35 E-value=40 Score=26.74 Aligned_cols=28 Identities=32% Similarity=0.354 Sum_probs=14.9
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 021664 149 RQLSSKITSVDRDVNKIVEISQATQEEV 176 (309)
Q Consensus 149 rhLsqRI~~vD~klde~~eis~~i~~eV 176 (309)
..|-.||+.+..|+++|.+.....++.|
T Consensus 3 edLrrrI~~LkrkV~~q~~~i~~Lq~nv 30 (87)
T 1fzc_A 3 EDLRSRIEVLKRKVIEKVQHIQLLQKNV 30 (87)
T ss_dssp ------CTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577899988888887766555444444
No 174
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=32.65 E-value=1.4e+02 Score=23.28 Aligned_cols=61 Identities=7% Similarity=0.040 Sum_probs=41.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHhHhhhhh--hHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHH
Q 021664 134 ARQLEDVYSSISAAQRQLSSKITSVDR--DVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (309)
Q Consensus 134 ~KqLeqVs~sL~~aKrhLsqRI~~vD~--klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~ 194 (309)
+.-++.--+-....-..++++|..+-. .-++-+.....++..+.++.+=|.++.-++.++.
T Consensus 14 SelFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p 76 (102)
T 2qyw_A 14 SEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAP 76 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 445555555555556666677776622 2266677788888888888888888888877764
No 175
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=32.57 E-value=97 Score=26.01 Aligned_cols=32 Identities=16% Similarity=0.377 Sum_probs=12.7
Q ss_pred HHHHHHhhhchhhhhhhHHHHHHHHHHHHHHH
Q 021664 173 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (309)
Q Consensus 173 ~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki 204 (309)
.|.|.++-.++-.+..++..++..|..|+..+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~ig~L~~~l 51 (125)
T 4g2k_A 20 EDKIEEILSKIYHIENEIARIKKLIGNLVSRL 51 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444444333
No 176
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=32.51 E-value=96 Score=27.09 Aligned_cols=51 Identities=6% Similarity=0.216 Sum_probs=29.8
Q ss_pred cchhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHH
Q 021664 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVE 167 (309)
Q Consensus 117 DlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~e 167 (309)
|-+|.+--.|.++...-...|.+=.+.|...+..|.++.+.|...++...+
T Consensus 34 e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 34 DKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666665555555555555555555555555555444
No 177
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=32.49 E-value=1.7e+02 Score=25.15 Aligned_cols=65 Identities=8% Similarity=0.195 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHhHHHHHHHH--------HHHHHH---HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhh
Q 021664 124 RSLSDACNSVARQLEDVYSSI--------SAAQRQ---LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGD 188 (309)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL--------~~aKrh---LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~ 188 (309)
+.....++.+.+-||.++.+| +.+|+. +..|.+.|...+.+-..+....+++|.+++.=+.++.+
T Consensus 75 ~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m~~ 150 (154)
T 2ocy_A 75 TKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSLDN 150 (154)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333445555555555555554 333332 45566666666666666666666666665555444443
No 178
>3h6p_C ESAT-6-like protein ESXR; four-helix bundle, structural genomics, PSI-2, protein struc initiative, TB structural genomics consortium; 1.91A {Mycobacterium tuberculosis} PDB: 2kg7_B 3q4h_B
Probab=32.48 E-value=44 Score=24.79 Aligned_cols=38 Identities=5% Similarity=-0.066 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHH
Q 021664 166 VEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (309)
Q Consensus 166 ~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~K 203 (309)
.+...+-.....+++.-|..|+.-++..+.....-|.+
T Consensus 52 ~~~~~~W~~~~~~l~~~L~~i~~~l~~a~~~y~~~d~~ 89 (96)
T 3h6p_C 52 QGWQTQWNQALEDLVRAYQSMSGTHESNTMAMLARDGA 89 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445455555555554444444444444433
No 179
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=32.47 E-value=38 Score=27.33 Aligned_cols=38 Identities=21% Similarity=0.204 Sum_probs=34.0
Q ss_pred HHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021664 172 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (309)
Q Consensus 172 i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (309)
+.++++.++..++....+-+.+++-+..||.+|....-
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l 47 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRAL 47 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66799999999999999999999999999999987443
No 180
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=32.45 E-value=1.4e+02 Score=21.63 Aligned_cols=37 Identities=16% Similarity=0.103 Sum_probs=27.8
Q ss_pred HHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021664 172 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (309)
Q Consensus 172 i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (309)
++..|..-..++.....++..++..++.|+..|+.+.
T Consensus 40 l~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 40 LSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4445555555667777888999999999999988764
No 181
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=32.42 E-value=2.1e+02 Score=24.92 Aligned_cols=57 Identities=2% Similarity=-0.022 Sum_probs=29.3
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHH
Q 021664 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (309)
Q Consensus 148 KrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~ 205 (309)
..++..|++.|..+-+...+....-+..+.+.. ++.+|..+++.+..-+...+..|.
T Consensus 187 ~~~i~~~~~~l~~~W~~l~~~~~~r~~~L~~~~-~~~~F~~~~~~l~~Wl~~~~~~l~ 243 (323)
T 3edv_A 187 ADDIQKRENEVLEAWKSLLDACESRRVRLVDTG-DKFRFFSMVRDLMLWMEDVIRQIE 243 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555555555555555554444 244555555555544444444444
No 182
>1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1
Probab=31.65 E-value=2.2e+02 Score=23.76 Aligned_cols=83 Identities=12% Similarity=0.083 Sum_probs=67.2
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHH
Q 021664 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (309)
Q Consensus 123 KRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~ 202 (309)
...+-...+.+-..+.++.+.+..-|.-++-+|-+..+==+==.++|+.+-++++++++....+.+.+..-+..-..+..
T Consensus 5 N~~I~~l~~~vk~ei~~l~e~~~~vk~WI~l~IPkiEDGNNFGV~VQeevl~~l~~v~~~~~~~~~~i~~Y~~~Ra~~v~ 84 (140)
T 1avo_B 5 NEKIVVLLQRLKPEIKDVIEQLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSLHTKLEGFHTQISKYFSERGDAVT 84 (140)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888888888888888888888877777666678999999999999999999998888888877777777
Q ss_pred HHH
Q 021664 203 KLI 205 (309)
Q Consensus 203 Ki~ 205 (309)
|+.
T Consensus 85 K~~ 87 (140)
T 1avo_B 85 KAA 87 (140)
T ss_dssp HHH
T ss_pred HHh
Confidence 754
No 183
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=31.51 E-value=1.9e+02 Score=22.66 Aligned_cols=69 Identities=10% Similarity=0.158 Sum_probs=37.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHH
Q 021664 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (309)
Q Consensus 130 v~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~ 205 (309)
.+++-++...+-..|+.++.++...++..... ......++..++.++..--.|-+.+-.+-..||-.|.
T Consensus 14 ~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~-------i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIa 82 (95)
T 3mov_A 14 YFQGQKESRACLERIQELEDLLAKEKDNSRRM-------LTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEIS 82 (95)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555556666666555554444433 3445556666666666666666666666666665543
No 184
>2wrg_I Hemagglutinin HA2 chain; viral protein, envelope protein, glycoprotein, lipoprotein; HET: NAG SIA GAL; 3.00A {Influenza a virus} PDB: 2wrh_I*
Probab=31.39 E-value=33 Score=31.20 Aligned_cols=55 Identities=15% Similarity=0.240 Sum_probs=40.1
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 021664 121 ATRRSLSDACNSVARQLEDVYSS-------ISAAQRQLSSKITSVDRDVNKIVEISQATQEE 175 (309)
Q Consensus 121 VTKRnms~Av~sv~KqLeqVs~s-------L~~aKrhLsqRI~~vD~klde~~eis~~i~~e 175 (309)
+-+++-..|.+.++..|..|.|. +...=.++-+||++|++++|+...=.-.-..|
T Consensus 36 AD~kSTQ~AId~It~KlN~liek~N~qf~~i~~EF~e~e~rI~~l~~~vdD~~~DvwsyNaE 97 (222)
T 2wrg_I 36 ADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNNLERRIENLNKKVDDGFLDIWTYNAE 97 (222)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTSCCCCSCCCCCCCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhccHH
Confidence 55688899999999999888654 44444578899999999999876333333333
No 185
>1mqm_B Hemagglutinin HA2 chain; influenza virus, viral protein; HET: NAG BMA MAN SIA GAL; 2.60A {Influenza a virus} SCOP: h.3.1.1 PDB: 1mql_B* 1mqn_B* 2l4g_A
Probab=31.32 E-value=13 Score=33.74 Aligned_cols=55 Identities=18% Similarity=0.217 Sum_probs=40.7
Q ss_pred hhhhhHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 021664 121 ATRRSLSDACNSVARQLEDVYS-------SISAAQRQLSSKITSVDRDVNKIVEISQATQEE 175 (309)
Q Consensus 121 VTKRnms~Av~sv~KqLeqVs~-------sL~~aKrhLsqRI~~vD~klde~~eis~~i~~e 175 (309)
+-+++-..|.+.+++.|..+.+ ++...=.+|-+||++|++|+|+...=.-.-..|
T Consensus 36 AD~kSTQ~AId~It~KlN~~iekmN~qfe~v~~ef~~~e~ri~~l~~~vdD~~~DvwsyNaE 97 (221)
T 1mqm_B 36 ADLKSTQAAIDQINRKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAE 97 (221)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHSCCCEECSCCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHH
Confidence 5678889999999999988854 355555678899999999999875433333334
No 186
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} SCOP: a.7.12.1
Probab=31.26 E-value=2.3e+02 Score=23.53 Aligned_cols=44 Identities=9% Similarity=0.168 Sum_probs=32.0
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH
Q 021664 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV 166 (309)
Q Consensus 123 KRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~ 166 (309)
++.+..-+.-+.+.|+...+++..--..+..+|...|+++|+..
T Consensus 13 ~~~l~~M~~~v~~ml~~a~~al~~~d~~~a~~v~~~d~~iD~l~ 56 (217)
T 1xwm_A 13 HNKLIEMGRLTEVALQQAIEAFQTQNANLAMAVIDGDGSIDALE 56 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhHHHHHHHH
Confidence 44555566666777777777777666778888888888887664
No 187
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=31.25 E-value=3.1e+02 Score=25.17 Aligned_cols=16 Identities=0% Similarity=0.162 Sum_probs=6.7
Q ss_pred HHHHHHHhHHHHHHHH
Q 021664 129 ACNSVARQLEDVYSSI 144 (309)
Q Consensus 129 Av~sv~KqLeqVs~sL 144 (309)
.+..+.+.+|.+.+.+
T Consensus 196 ~l~~l~~~id~lE~~v 211 (363)
T 2iub_A 196 LLEKIDDEIDVLEEEV 211 (363)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 188
>2bsg_A Fibritin; viral protein, attachment protein, bacteriophage assembly, chaperone, coiled coil, structural protein; 15.00A {Bacteriophage T4}
Probab=31.21 E-value=50 Score=33.29 Aligned_cols=110 Identities=14% Similarity=0.109 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHH---hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHH
Q 021664 124 RSLSDACNSVARQLEDVYSSISAAQRQLSS---KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (309)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsq---RI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~L 200 (309)
-+|..|--.|-|..+.+.+-+...+..+.. +|...++-|+..-... .-++|..-+.|++.+..++...+..+..+
T Consensus 43 G~lNra~v~VQ~NV~~Ld~N~~~~~~~~ne~~~~Vn~I~~~L~~~GD~~--vi~qI~~n~~dI~~Lk~~~~~~~~~l~~~ 120 (487)
T 2bsg_A 43 GSMNRPTVSVLRNVEVLDKNIGILKTSLETANSDIKTIQGILDVSGDIE--ALAQIGINKKDISDLKTLTSEHTEILNGT 120 (487)
T ss_pred cccccchhhhhhhHHHHhhhHHHHHhhHHHHHHHHHHHHHHHhccccHH--HHHHHHhhHHHHHHHhcchhhhhhhhhhh
Confidence 456777777888888888888888877766 4444444444322222 33445555555555555555566566666
Q ss_pred HHHHHHhhhh-------hhhHhHHHHHHHHHHHhhccCCCccc
Q 021664 201 ESKLIEIEGK-------QDITTLGVKKLCDRARELENGRPTEL 236 (309)
Q Consensus 201 e~Ki~~ie~k-------Qd~Tn~GV~~LC~f~~~~~~~~~~~~ 236 (309)
..++++|+.. .|...+=|+.=..|++. +=|..+.+
T Consensus 121 ~~~~~ei~~diG~~~~~~d~~~rTV~~DI~~IK~-elG~Y~g~ 162 (487)
T 2bsg_A 121 NNTVDSILADIGPFNAEANSVYRTIRNDLLWIKR-ELGQYTGQ 162 (487)
T ss_pred ccchHHHHhhcCccCcccCCCccccchhHHHHHH-HhccCCCC
Confidence 6666666544 23222334444456654 33444443
No 189
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=31.19 E-value=79 Score=29.91 Aligned_cols=64 Identities=20% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh------hhhHHHHHHH-----------------------H
Q 021664 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI------GDEFQSVRDI-----------------------V 197 (309)
Q Consensus 147 aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~i------g~Dv~~v~~~-----------------------V 197 (309)
|+.-|..|+.++...|.+...-...-+++|.+++..+.++ +++|.-+..+ +
T Consensus 303 ~~~~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~q~ 382 (406)
T 4dyl_A 303 TVESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELRNEEENTHPRERVQLLGKRQVLQEALQGLQVALCSQAKLQAQQ 382 (406)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred HHHHHHHHHhhhh
Q 021664 198 QTLESKLIEIEGK 210 (309)
Q Consensus 198 ~~Le~Ki~~ie~k 210 (309)
..|+.||.++..+
T Consensus 383 ~~~~~~~~~~~~~ 395 (406)
T 4dyl_A 383 ELLQTKLEHLGPG 395 (406)
T ss_dssp HHHHHHHHTTTTS
T ss_pred HHHHHHHHhcCCC
No 190
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=31.07 E-value=75 Score=30.71 Aligned_cols=32 Identities=13% Similarity=0.117 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 021664 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEE 175 (309)
Q Consensus 144 L~~aKrhLsqRI~~vD~klde~~eis~~i~~e 175 (309)
|...-++|.+|++.++.+..++.+..+..+++
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~ 39 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQ 39 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455555555554444444444433
No 191
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=30.95 E-value=1.8e+02 Score=22.26 Aligned_cols=67 Identities=9% Similarity=0.085 Sum_probs=38.1
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 021664 145 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (309)
Q Consensus 145 ~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (309)
..-|..|..-|+|+-.-+++.+.=-+.=...=+.+-.|+..+..|++...-.-..||.|++++..--
T Consensus 13 ~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 13 TNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544444433222211122234445556666668888888889999999886543
No 192
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=30.87 E-value=3.1e+02 Score=25.02 Aligned_cols=84 Identities=20% Similarity=0.266 Sum_probs=57.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHH------HHHHH
Q 021664 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD------IVQTL 200 (309)
Q Consensus 127 s~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~------~V~~L 200 (309)
.+++.+|+-.|-.+...+..+..++.++++..-..|-..- .+.+.|...|..=..+.++|..++. -+..|
T Consensus 61 dddl~DIsdklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR----~~E~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~L 136 (234)
T 3plt_A 61 DDDVSDVTDKLGVLIYELGELQDQFIDKYDQYRVTLKSIR----NIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVL 136 (234)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhHHHHHHHHHHHHHHHHhccCCCCchHHHH
Confidence 5788888888888888888888888888777666554433 3334455555555666666666653 46678
Q ss_pred HHHHHHhhhhhhhH
Q 021664 201 ESKLIEIEGKQDIT 214 (309)
Q Consensus 201 e~Ki~~ie~kQd~T 214 (309)
|..|.+.|.....+
T Consensus 137 eqELvraEae~lva 150 (234)
T 3plt_A 137 EQELVRAEAESLVA 150 (234)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHH
Confidence 88777666554444
No 193
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=30.60 E-value=2.8e+02 Score=24.45 Aligned_cols=80 Identities=15% Similarity=0.214 Sum_probs=38.1
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc-----------hhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHh
Q 021664 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR-----------SKLIGDEFQSVRDIVQTLESKLIEIEGKQDITT 215 (309)
Q Consensus 147 aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~d-----------l~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn 215 (309)
-..+|-.-|+....+.-+...-....+.|+...+.+ ++.+..++..++.....|-.+|-.+|-..|-=.
T Consensus 43 LE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlE 122 (189)
T 2v71_A 43 LEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLE 122 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 334444444444444444444444444444443333 233344455555555555555555655555555
Q ss_pred HHHHHHHHHHH
Q 021664 216 LGVKKLCDRAR 226 (309)
Q Consensus 216 ~GV~~LC~f~~ 226 (309)
.-...+|.-.+
T Consensus 123 r~~R~~~~Sle 133 (189)
T 2v71_A 123 RAKRATIMSLE 133 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhHH
Confidence 55555554443
No 194
>2rft_B Influenza B hemagglutinin (HA); viral protein, receptor specificity, envelope Pro fusion protein, membrane, transmembrane, VIR glycoprotein; HET: NAG SIA BGC GAL NDG; 2.80A {Influenza b virus} SCOP: j.79.1.1 PDB: 2rfu_B* 3bt6_B*
Probab=30.59 E-value=22 Score=31.27 Aligned_cols=56 Identities=23% Similarity=0.344 Sum_probs=40.4
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 021664 121 ATRRSLSDACNSVARQLEDVYSS-------ISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (309)
Q Consensus 121 VTKRnms~Av~sv~KqLeqVs~s-------L~~aKrhLsqRI~~vD~klde~~eis~~i~~eV 176 (309)
+-+++-.+|...++..|..+.+. +...=.++-+||.+|++++|+...=.-.-..|+
T Consensus 36 ad~ksTQ~aId~It~K~N~~iek~n~qfe~i~~ef~~~e~rI~~l~~~vdD~~~DvwsynaEL 98 (176)
T 2rft_B 36 ADLKSTQEAINKITKNLNSLSELEVKNLQRLSGAMDELHNEILELDEKVDDLRADTISSQIEL 98 (176)
T ss_dssp CCTTHHHHHHHHHHHHHHHHTTCCCCCCCCCSSCCTTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHH
Confidence 56788899999999999888542 333344888999999999998764333333443
No 195
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=30.59 E-value=4e+02 Score=28.84 Aligned_cols=83 Identities=8% Similarity=0.119 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhHHHHHHH------HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh----hhchhhhhhhHHHHHH
Q 021664 126 LSDACNSVARQLEDVYSS------ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL----RGRSKLIGDEFQSVRD 195 (309)
Q Consensus 126 ms~Av~sv~KqLeqVs~s------L~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v----~~dl~~ig~Dv~~v~~ 195 (309)
+.+-|+.+-+.++.+... +..--+.|...|+.++.++++...-.+.++++.... ++.++++..+...+++
T Consensus 958 ~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~q 1037 (1080)
T 2dfs_A 958 YSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKT 1037 (1080)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455554444443322 223346777888888887777665555555554444 4445555555555666
Q ss_pred HHHHHHHHHHHhh
Q 021664 196 IVQTLESKLIEIE 208 (309)
Q Consensus 196 ~V~~Le~Ki~~ie 208 (309)
-+..||..+...+
T Consensus 1038 q~~~l~~~~~~~~ 1050 (1080)
T 2dfs_A 1038 EKEELNRRIHDQA 1050 (1080)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5666665554443
No 196
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=30.16 E-value=2.4e+02 Score=28.01 Aligned_cols=88 Identities=10% Similarity=0.047 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHH--HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh---hhhhhHHHHHHHHHHHHHHHHHhhhh
Q 021664 136 QLEDVYSSISAAQR--QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK---LIGDEFQSVRDIVQTLESKLIEIEGK 210 (309)
Q Consensus 136 qLeqVs~sL~~aKr--hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~---~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (309)
+.|.|-++++.=.. .+-.+|-.+|.+--+...-.++++.+-+.+...+. .-+.|.+.+..-+..|..+|..+|..
T Consensus 14 n~~~v~~~~~~R~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~ 93 (485)
T 3qne_A 14 DPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEK 93 (485)
T ss_dssp CHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555542111 13456666666666665556666666555555443 34678888888899999999999988
Q ss_pred hhhHhHHHHHHHH
Q 021664 211 QDITTLGVKKLCD 223 (309)
Q Consensus 211 Qd~Tn~GV~~LC~ 223 (309)
..-...-+..++.
T Consensus 94 ~~~~~~~~~~~l~ 106 (485)
T 3qne_A 94 EAEADKNLRSKIN 106 (485)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 8777776666543
No 197
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=29.86 E-value=11 Score=33.24 Aligned_cols=13 Identities=38% Similarity=0.521 Sum_probs=10.2
Q ss_pred eeeEcCcccceee
Q 021664 9 TFLVGAGILTSVL 21 (309)
Q Consensus 9 ~ILvGAG~~GSvl 21 (309)
++|||||++|..+
T Consensus 4 V~IVGaGpaGl~~ 16 (412)
T 4hb9_A 4 VGIIGAGIGGTCL 16 (412)
T ss_dssp EEEECCSHHHHHH
T ss_pred EEEECcCHHHHHH
Confidence 5688999998653
No 198
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=29.85 E-value=1.8e+02 Score=21.92 Aligned_cols=41 Identities=12% Similarity=0.177 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHH
Q 021664 165 IVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (309)
Q Consensus 165 ~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~ 205 (309)
..........++..+|.++.+.-.|-+.+-++=..||--|.
T Consensus 31 ~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIa 71 (84)
T 1gk4_A 31 YQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIA 71 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33444445566666666666666666666666566665543
No 199
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=29.63 E-value=2.8e+02 Score=24.09 Aligned_cols=14 Identities=7% Similarity=0.176 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHhc
Q 021664 61 LLAEVSSVQQELSH 74 (309)
Q Consensus 61 L~aQV~~LaqEl~~ 74 (309)
+..+-+.+.+|+..
T Consensus 44 l~~~~~~f~~el~~ 57 (323)
T 3edv_A 44 LQERFREFARDTGN 57 (323)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666666654
No 200
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=29.39 E-value=2.6e+02 Score=24.09 Aligned_cols=77 Identities=9% Similarity=0.196 Sum_probs=43.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHH-HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHH---HHHHHHHHHHHh
Q 021664 132 SVARQLEDVYSSISAAQRQLS-SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD---IVQTLESKLIEI 207 (309)
Q Consensus 132 sv~KqLeqVs~sL~~aKrhLs-qRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~---~V~~Le~Ki~~i 207 (309)
.+...||.|-+.+..+=+.+. -+++.++..+.++.++....-+++.++=..+.+++.|.+.+.. -|..+|.+.|.+
T Consensus 98 ~L~~~lDdI~D~ie~~a~~l~l~~~~~~~~~~~~l~~~i~~~~~~l~~ai~~L~~~~~~~~~i~~~~~eI~~lE~eaD~l 177 (227)
T 3l39_A 98 DLASCMDDVIDGINSSAKRIVIYNPRPISESGKELSRLIHEEAINIGKAMDELETFRKNPKPLRDYCTQLHDIENQADDV 177 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHHHHTTTTTTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666655555443 3445556666666666555555555555555555435444444 477778877776
Q ss_pred h
Q 021664 208 E 208 (309)
Q Consensus 208 e 208 (309)
.
T Consensus 178 ~ 178 (227)
T 3l39_A 178 Y 178 (227)
T ss_dssp H
T ss_pred H
Confidence 5
No 201
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=29.37 E-value=2.5e+02 Score=26.94 Aligned_cols=22 Identities=9% Similarity=0.353 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHhHhh
Q 021664 136 QLEDVYSSISAAQRQLSSKITS 157 (309)
Q Consensus 136 qLeqVs~sL~~aKrhLsqRI~~ 157 (309)
.+.+-.+.|.+-|..+++.|..
T Consensus 39 ~~~~~~~~l~~~~n~~sk~i~~ 60 (421)
T 1ses_A 39 ELKKRLQEVQTERNQVAKRVPK 60 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444456666667777777765
No 202
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=29.23 E-value=2e+02 Score=26.39 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021664 161 DVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (309)
Q Consensus 161 klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (309)
++-...+-....+-.++...+|+....-++..+...|.+.|.+|+.|+
T Consensus 99 RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~ 146 (242)
T 3c9i_A 99 RITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQ 146 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhh
Confidence 333344444444455566666666666666666666666666666665
No 203
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=29.13 E-value=3.3e+02 Score=24.75 Aligned_cols=46 Identities=9% Similarity=0.129 Sum_probs=23.5
Q ss_pred HHHHHHHHHhHhhhhhhHHHH-HHHHHHHHHHHHHhhhchhhhhhhH
Q 021664 145 SAAQRQLSSKITSVDRDVNKI-VEISQATQEEVTILRGRSKLIGDEF 190 (309)
Q Consensus 145 ~~aKrhLsqRI~~vD~klde~-~eis~~i~~eV~~v~~dl~~ig~Dv 190 (309)
...|..+.++++.+-.+|.-. .++...+...+.+++..+.-.-.|+
T Consensus 102 eelr~kl~~~veelk~~L~Py~eelr~k~~~~leeLr~~l~P~ae~~ 148 (273)
T 3s84_A 102 DELKAKIDQNVEELKGRLTPYADEFKVKIDQTVEELRRSLAPYAQDT 148 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCSSC
T ss_pred HHHHHHHHhhHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 444555555555555555432 3444555555666666554444443
No 204
>1jsd_B Haemagglutinin (HA2 chain); viral protein; HET: NAG; 1.80A {Influenza a virus} SCOP: h.3.1.1 PDB: 1jsh_B* 1jsi_B*
Probab=28.92 E-value=48 Score=29.14 Aligned_cols=56 Identities=7% Similarity=0.246 Sum_probs=40.7
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHH-------HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 021664 121 ATRRSLSDACNSVARQLEDVYSSI-------SAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (309)
Q Consensus 121 VTKRnms~Av~sv~KqLeqVs~sL-------~~aKrhLsqRI~~vD~klde~~eis~~i~~eV 176 (309)
+-+++-.+|...+++.|..+.+.. ...=.++-+||.+|+.++|+...=.-.-..|+
T Consensus 36 ad~~sTQ~aid~It~K~N~~iekmn~qf~~i~~ef~e~e~ri~~l~~~vdD~~~DiwsynaEL 98 (176)
T 1jsd_B 36 ADSDSTQKAIDKITSKVNNIVDKMNKQYGIIDHEFSEIETRLNMINNKIDDQIQDIWTYNAEL 98 (176)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH
Confidence 667888999999999998887543 23345788999999999998764333333443
No 205
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=28.75 E-value=1.1e+02 Score=21.79 Aligned_cols=10 Identities=10% Similarity=0.518 Sum_probs=4.3
Q ss_pred HHHhHhhhhh
Q 021664 151 LSSKITSVDR 160 (309)
Q Consensus 151 LsqRI~~vD~ 160 (309)
+++|++.++.
T Consensus 35 vt~rle~lEn 44 (47)
T 1aq5_A 35 VAKRIEALEN 44 (47)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3444444433
No 206
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=28.07 E-value=2.7e+02 Score=23.41 Aligned_cols=67 Identities=12% Similarity=0.309 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHH----HhHhhhhhhHHHH-HHHHHHHHHHHHHhhhchhhhhhhHH
Q 021664 125 SLSDACNSVARQLEDVYSSISAAQRQLS----SKITSVDRDVNKI-VEISQATQEEVTILRGRSKLIGDEFQ 191 (309)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~~aKrhLs----qRI~~vD~klde~-~eis~~i~~eV~~v~~dl~~ig~Dv~ 191 (309)
...+..+.+.|.|+.+...|.--..++. +.++.+-.+|.=. .++.+.++.++.++|..|.-+.+++.
T Consensus 79 ~~~~Lr~~l~kdlee~r~~l~P~~~e~~~~~~~~~e~lr~~l~Py~~el~~~~~~~~e~Lr~~L~p~~e~lr 150 (185)
T 3r2p_A 79 ETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMR 150 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3455666777777777766665555544 4444444444432 45566667777788888877777664
No 207
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=28.03 E-value=1.9e+02 Score=21.75 Aligned_cols=27 Identities=11% Similarity=0.124 Sum_probs=17.3
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHH
Q 021664 152 SSKITSVDRDVNKIVEISQATQEEVTI 178 (309)
Q Consensus 152 sqRI~~vD~klde~~eis~~i~~eV~~ 178 (309)
...++.+..++++..+-...+..++..
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345666777777666666666666654
No 208
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=27.82 E-value=2e+02 Score=21.84 Aligned_cols=55 Identities=9% Similarity=0.219 Sum_probs=23.5
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021664 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (309)
Q Consensus 151 LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (309)
+++|++.+..+=.+..+-....++++.+-+..=++...+ ++...+.|++||+++.
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~E---lk~~~e~Ld~KI~eL~ 59 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSN---LKTLLEILDGKIFELT 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHH
Confidence 344444444444333333333344443333333333322 2333455666666554
No 209
>1wyy_A E2 glycoprotein; membrane fusion, severe acute respiratory syndrome, viral PR; 2.20A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1wnc_A 2fxp_A
Probab=27.65 E-value=36 Score=29.36 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=12.5
Q ss_pred HhhhchhhhhhhHHHHHHHHHHHHHHH
Q 021664 178 ILRGRSKLIGDEFQSVRDIVQTLESKL 204 (309)
Q Consensus 178 ~v~~dl~~ig~Dv~~v~~~V~~Le~Ki 204 (309)
++.-...++...++.++..+..|-.-+
T Consensus 113 ~Le~s~~~L~k~~~eLq~~IdnlN~TL 139 (149)
T 1wyy_A 113 GINASVVNIQKEIDRLNEVAKNLNESL 139 (149)
T ss_dssp TCCCCCCCCHHHHHHHHHHHHHGGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333333344445555555555554433
No 210
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=27.62 E-value=2.4e+02 Score=22.62 Aligned_cols=73 Identities=7% Similarity=0.008 Sum_probs=57.3
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhh--hhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021664 135 RQLEDVYSSISAAQRQLSSKITSV--DRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (309)
Q Consensus 135 KqLeqVs~sL~~aKrhLsqRI~~v--D~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (309)
...+........-+..+..+|+.. -+.+|++.+-+..+++.|++.-.-|- -+|+..-+..+..|..++++...
T Consensus 31 E~~~~F~~~F~~~~~~Ie~~l~~~~~~~~ld~i~~~I~~Lqk~v~das~fLp--~YD~R~~q~~i~~L~~~l~e~r~ 105 (111)
T 2l3l_A 31 ENSHFFVATFARERAAVEELLERAESVERLEEAASRLQGLQKLINDSVFFLA--AYDLRQGQEALARLQAALAERRR 105 (111)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHSTTTSC--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHhhhcc--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777788888888766 55688888888888899988777665 47899999999999999887643
No 211
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=27.60 E-value=2.1e+02 Score=22.10 Aligned_cols=51 Identities=14% Similarity=0.175 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021664 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR 180 (309)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~ 180 (309)
+..+....++-....|+..+..++++|...+..... .+....+++-+..++
T Consensus 43 s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~~~-----~~~~~~~~~~~~~~~ 93 (113)
T 1xsv_A 43 SLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKLEL-----YQKFEQRREIYDEMK 93 (113)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCH-----HHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHhH-----HhHHHHHHHHHHHHH
Confidence 556666777777788888999999999888765422 333334444444444
No 212
>2b9b_A Fusion glycoprotein F0; fusion protein, PRE-fusion conformation, viral protein; HET: NAG; 2.85A {Simian virus 5}
Probab=27.56 E-value=1.4e+02 Score=30.15 Aligned_cols=49 Identities=16% Similarity=0.390 Sum_probs=29.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHh---HhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021664 132 SVARQLEDVYSSISAAQRQLSSK---ITSVDRDVNKIVEISQATQEEVTILR 180 (309)
Q Consensus 132 sv~KqLeqVs~sL~~aKrhLsqR---I~~vD~klde~~eis~~i~~eV~~v~ 180 (309)
+++.+|.+|-.+|..++.||.+= ++.|....++...-.-.+++||..++
T Consensus 427 DISseL~~vn~sl~~a~~~I~~Sn~~L~~v~~~~~~~~~~~~~~~~~~~~~~ 478 (497)
T 2b9b_A 427 DISQNLAAVNKSLSDALQHLAQSDTYLSAIEDKIEEILSKIYHIENEIARIK 478 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHhhhhhhhHHHHHHH
Confidence 57888999999999999887542 33333444444333334444444443
No 213
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=27.53 E-value=1.7e+02 Score=22.40 Aligned_cols=53 Identities=11% Similarity=0.104 Sum_probs=36.0
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHH
Q 021664 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (309)
Q Consensus 149 rhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le 201 (309)
.+|-++||.+|.+|=+.-+---.+-++|.+++..-..--.|-+--++++..+.
T Consensus 15 ~~lR~~ID~iD~~Ll~LL~~R~~~~~~Ig~~K~~~~~~i~dp~RE~~vl~~~~ 67 (90)
T 2vkl_A 15 DTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERYS 67 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHH
Confidence 35777899999999888877777888888888653333344444555554443
No 214
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=27.52 E-value=45 Score=28.71 Aligned_cols=27 Identities=11% Similarity=0.089 Sum_probs=22.3
Q ss_pred eeeEEecccCcCcchhhhhhhHHHHHHH
Q 021664 105 YGYVWWKGWKLPDMMFATRRSLSDACNS 132 (309)
Q Consensus 105 YgYmwWKGws~SDlMfVTKRnms~Av~s 132 (309)
--|+.|||+|--+--|+|-.+|.+ |..
T Consensus 48 EYlVKWKg~Sy~HnTWe~ee~L~~-~~g 74 (177)
T 2h1e_A 48 EFLIKWTDESHLHNTWETYESIGQ-VRG 74 (177)
T ss_dssp EEEEEETTSCGGGCEEECHHHHCS-CTT
T ss_pred EEEEEECCCccccCeecCHHHHhh-chH
Confidence 347889999999999999999975 443
No 215
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=27.50 E-value=1.8e+02 Score=23.75 Aligned_cols=38 Identities=3% Similarity=0.136 Sum_probs=23.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHH
Q 021664 185 LIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLC 222 (309)
Q Consensus 185 ~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC 222 (309)
.+..+++.++.+...|+.++..++......+.-...|.
T Consensus 91 ~L~~~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~Li 128 (146)
T 3hh0_A 91 VLLAEQERIAKVLSHMDEMTKKFQKEERVNVALFSSFL 128 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHH
Confidence 44445566667777777777777666665555444444
No 216
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=27.47 E-value=2.1e+02 Score=21.87 Aligned_cols=36 Identities=3% Similarity=0.035 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHH
Q 021664 168 ISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (309)
Q Consensus 168 is~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~K 203 (309)
....+++++.+++..+..+...+..+..-+..|+.+
T Consensus 65 ~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~ 100 (112)
T 1l8d_A 65 LLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDME 100 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444333333333
No 217
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=27.45 E-value=2.2e+02 Score=22.23 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=14.8
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 021664 122 TRRSLSDACNSVARQLEDVYSSISAAQ 148 (309)
Q Consensus 122 TKRnms~Av~sv~KqLeqVs~sL~~aK 148 (309)
+++||..|..+==+-=+-+++.|..+|
T Consensus 11 ~~leLQSALeaEIqAKQ~i~EELs~vr 37 (81)
T 1wt6_A 11 TLRELQEALEEEVLTRQSLSREMEAIR 37 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888777653333333444444444
No 218
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=27.08 E-value=1.6e+02 Score=29.94 Aligned_cols=54 Identities=13% Similarity=0.197 Sum_probs=29.6
Q ss_pred ccCcCcchhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHH
Q 021664 112 GWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEIS 169 (309)
Q Consensus 112 Gws~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis 169 (309)
|=..+|=.=-+.+.|.+-+.. ||.....-..--||=..=++..++.|++...+.
T Consensus 81 ~~~~pDPLsPgE~~~~~Kl~e----LE~e~k~d~~~~khn~~I~~k~g~~l~~v~~~~ 134 (526)
T 3iyk_A 81 GEEIPDPLSPGERGIQAKLKE----LEDEQRNELVRLKYNDKIKEKFGKELEEVYNFM 134 (526)
T ss_pred CCCCCCCCCHhHHHHHHHHHH----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788777777777666543 344444334444444444455555555554443
No 219
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=27.04 E-value=1.4e+02 Score=27.05 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=9.0
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHH
Q 021664 123 RRSLSDACNSVARQLEDVYSSISA 146 (309)
Q Consensus 123 KRnms~Av~sv~KqLeqVs~sL~~ 146 (309)
|+.++.-.+.+-+.|.++...|..
T Consensus 166 k~yLa~R~~~lK~kl~~l~~~L~~ 189 (228)
T 3q0x_A 166 KQFLAFRLSEVKGTCHDLSDDLSR 189 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 220
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=26.84 E-value=1.9e+02 Score=21.12 Aligned_cols=30 Identities=13% Similarity=0.159 Sum_probs=21.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhh
Q 021664 130 CNSVARQLEDVYSSISAAQRQLSSKITSVD 159 (309)
Q Consensus 130 v~sv~KqLeqVs~sL~~aKrhLsqRI~~vD 159 (309)
.+.|-.|++.|.+.+..+...+..|-++|+
T Consensus 6 i~~v~~qv~ev~~iM~~ni~kvlERGekL~ 35 (63)
T 1urq_A 6 IEGVKGAASGVVGELARARLALDERGQKLS 35 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888888877766554
No 221
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=26.73 E-value=1.1e+02 Score=21.76 Aligned_cols=34 Identities=15% Similarity=0.328 Sum_probs=19.1
Q ss_pred HHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021664 176 VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (309)
Q Consensus 176 V~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (309)
+..++.|--++..|-+++..++..|...|.++|.
T Consensus 12 iarlkkdnlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 12 IARLKKDNLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 3333334344455556666666666666666654
No 222
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=26.65 E-value=1e+02 Score=28.99 Aligned_cols=35 Identities=3% Similarity=0.113 Sum_probs=25.1
Q ss_pred chhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 021664 118 MMFATRRSLSDACNSVARQLEDVYSSISAAQRQLS 152 (309)
Q Consensus 118 lMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLs 152 (309)
.+|+.+=|+.+..+.+.++++++...++..++.|.
T Consensus 237 ~l~lA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (426)
T 1lrz_A 237 LVPLAYINFDEYIKELNEERDILNKDLNKALKDIE 271 (426)
T ss_dssp ECEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566667777888888888887777777765553
No 223
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=26.56 E-value=1.9e+02 Score=24.08 Aligned_cols=142 Identities=9% Similarity=0.087 Sum_probs=80.6
Q ss_pred HHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHH--HHhcC-CCceEEEeCCCCCCCCchhHHHHHHhhhheeeEEeccc
Q 021664 37 TLKIVSKLIKQDDPGPSDRKLFNDLLAEVSSVQQ--ELSHV-PRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGW 113 (309)
Q Consensus 37 ~lk~l~k~lk~~d~s~s~~~~~~dL~aQV~~Laq--El~~L-sr~iTVvn~~ssg~gg~~y~l~a~iGavGYgYmwWKGw 113 (309)
.+++.++-+++-++.|+ ....|.++.++|.+ +|+.. ..-...++++ . +|..-.+..++..+.-
T Consensus 16 ~L~~ql~El~~~~l~~g---E~eeLe~e~~rL~nae~l~~~~~~a~~~L~~~--e-~~~~~~L~~a~~~L~~-------- 81 (175)
T 4abx_A 16 LLAFQVQEISEVSPDPG---EEEGLNTELSRLSNLHTIAQAAAGGVELLSDG--D-LNAAGLIGEAVRALNA-------- 81 (175)
T ss_dssp HHHHHHHHHHHHCCCTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--S-SCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHhCCCCCC---hHHHHHHHHHHHHCHHHHHHHHHHHHHHHhCC--c-chHHHHHHHHHHHHHH--------
Confidence 34555555665555553 12228888888876 34443 3333344433 1 2222222122222210
Q ss_pred CcCcchhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH---HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhH
Q 021664 114 KLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLS---SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEF 190 (309)
Q Consensus 114 s~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLs---qRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv 190 (309)
++++ .-.=..+.+.+.++--+|+.++..|+..-.++. .|++.|..+|+....+.+--...+.++-.-..++..++
T Consensus 82 -l~~~-d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~rL~~ie~RL~~l~~L~RKyg~~~eell~~~~~~~~eL 159 (175)
T 4abx_A 82 -GAKY-DETVMQLQNELRAALESVQAIAGELRDVAEGSAADPEALDRVEARLSALSKLKNKYGPTLEDVVEFGAQAAEEL 159 (175)
T ss_dssp -HHTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred -HHHh-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 0000 122356888888888999999999988777773 78999999999888888766545555544444444444
Q ss_pred HHHH
Q 021664 191 QSVR 194 (309)
Q Consensus 191 ~~v~ 194 (309)
..+.
T Consensus 160 ~~l~ 163 (175)
T 4abx_A 160 AGLE 163 (175)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4443
No 224
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=26.50 E-value=89 Score=25.65 Aligned_cols=44 Identities=14% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021664 163 NKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (309)
Q Consensus 163 de~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (309)
|+-..++...+.||..++..++.| ...-+..|..|+++|..+|+
T Consensus 11 d~rD~~Ie~Lkreie~lk~ele~l---~~E~q~~v~ql~~~i~~Le~ 54 (120)
T 3i00_A 11 DEKDHLIERLYREISGLKAQLENM---KTESQRVVLQLKGHVSELEA 54 (120)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
No 225
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=26.43 E-value=2.1e+02 Score=26.12 Aligned_cols=39 Identities=3% Similarity=0.095 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH
Q 021664 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV 166 (309)
Q Consensus 126 ms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~ 166 (309)
|..+|+.+...+..+......+-++|..+|++ .+|....
T Consensus 132 L~~v~~~Le~e~~~l~~~~~~~L~~L~~~i~~--~~L~~Ll 170 (261)
T 3rkg_A 132 FINVMSALETDFKLHSQICIQILNDLENEVNR--LKLRHLL 170 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH--HHHHHHH
Confidence 55677777777777888777888888877765 4555443
No 226
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=26.30 E-value=1.8e+02 Score=20.91 Aligned_cols=48 Identities=8% Similarity=0.106 Sum_probs=20.6
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHH
Q 021664 154 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (309)
Q Consensus 154 RI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le 201 (309)
|+++=.++|+++..+..+|.+-=..+-.+|..=++-+...+..+...+
T Consensus 3 rL~~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d 50 (65)
T 1gl2_C 3 HMNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTN 50 (65)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHH
Confidence 444444445555555444444443333444444444444443333333
No 227
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=26.27 E-value=1.2e+02 Score=21.62 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=13.2
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 021664 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGR 182 (309)
Q Consensus 151 LsqRI~~vD~klde~~eis~~i~~eV~~v~~d 182 (309)
|..+++.+..+=.+..+.-+.-++++..+++.
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkee 45 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREE 45 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333333
No 228
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=26.26 E-value=2.1e+02 Score=21.51 Aligned_cols=29 Identities=7% Similarity=-0.019 Sum_probs=13.5
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHH
Q 021664 121 ATRRSLSDACNSVARQLEDVYSSISAAQR 149 (309)
Q Consensus 121 VTKRnms~Av~sv~KqLeqVs~sL~~aKr 149 (309)
|+=-.|.++...+...-+++.+.|..-+.
T Consensus 11 v~~~~l~~~a~~~~~~~~~i~~~l~~L~~ 39 (103)
T 4i0x_B 11 FDLDHIEQVTSRARGFKEFVTENLDQLES 39 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555554444444444444333
No 229
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=26.12 E-value=3.3e+02 Score=23.74 Aligned_cols=39 Identities=13% Similarity=0.236 Sum_probs=30.1
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhh
Q 021664 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVD 159 (309)
Q Consensus 121 VTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD 159 (309)
-.||.+.+....+.|.+...+..+..+|+..-++-...+
T Consensus 114 kerK~~~~~~~k~~k~~~~~~~~l~kaKk~Y~~~c~e~~ 152 (290)
T 3i2w_A 114 KERKDLEDLFKKAQKPWAKLLAKVEKAKADYHSACKTER 152 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778888888888889999999999998876655433
No 230
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=26.04 E-value=1.4e+02 Score=21.38 Aligned_cols=41 Identities=17% Similarity=0.312 Sum_probs=25.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHH
Q 021664 158 VDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 198 (309)
Q Consensus 158 vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~ 198 (309)
|+.++...++-.+.|.+-|.++...++.+.-=++.+|+-+.
T Consensus 2 le~~I~~Lk~ai~~TNeAV~~L~~g~~~la~Av~~iQ~~IN 42 (51)
T 3kpe_A 2 LEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYID 42 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666777777776777766666665543
No 231
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1
Probab=26.03 E-value=2.6e+02 Score=28.14 Aligned_cols=81 Identities=14% Similarity=0.216 Sum_probs=58.1
Q ss_pred Ccchhhhhh--hHHHHHHHHHHhHHHHHHHHHHHHH-----------------------------HHHHhHhhhhhhHHH
Q 021664 116 PDMMFATRR--SLSDACNSVARQLEDVYSSISAAQR-----------------------------QLSSKITSVDRDVNK 164 (309)
Q Consensus 116 SDlMfVTKR--nms~Av~sv~KqLeqVs~sL~~aKr-----------------------------hLsqRI~~vD~klde 164 (309)
.|-+|+.-| ++.++...+.+.+++..+.....++ ++.++-..++..+.=
T Consensus 329 ~D~~w~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lk~~V~~LP~~~~~~~~l~~H~~i 408 (671)
T 1mqs_A 329 NDFFWMENSHLPFPEAAENVEAALNTYKEEAAEITRKTGVTNISDLDPNSNNDTVQIQEVVKKLPELTAKKNTIDTHMNI 408 (671)
T ss_dssp SCTTHHHHSSSBHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCCSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhcccCccCcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 799999887 7899999999999988887654332 566777778888888
Q ss_pred HHHHHHHHHH----HHHHhhhchhhhhhhHHHHHHHH
Q 021664 165 IVEISQATQE----EVTILRGRSKLIGDEFQSVRDIV 197 (309)
Q Consensus 165 ~~eis~~i~~----eV~~v~~dl~~ig~Dv~~v~~~V 197 (309)
+.+|.+.+++ ++.++..++- -+.|.+.|..++
T Consensus 409 a~~l~~~i~~~~l~~~~e~EQ~l~-~~~~~~~i~~ll 444 (671)
T 1mqs_A 409 FAALLSQLESKSLDTFFEVEQDPG-STKTRSRFLDIL 444 (671)
T ss_dssp HHHHHHHHHTTTCHHHHHHTSCCS-SHHHHHHHHHHT
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHh-cCchHHHHHHHH
Confidence 8888888875 5777777763 233334444333
No 232
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=25.75 E-value=1.8e+02 Score=21.71 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021664 167 EISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (309)
Q Consensus 167 eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (309)
+....+...+..+++.-..+|. ..+..+...+|.-++.+.
T Consensus 36 ~~~~~l~r~~HtLKGsa~~~G~--~~l~~la~~lE~~l~~~r 75 (105)
T 1tqg_A 36 ELINEAFRALHTLKGMAGTMGF--SSMAKLCHTLENILDKAR 75 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHhcCh--HHHHHHHHHHHHHHHHHH
Confidence 3344555555666666555553 355666666666555443
No 233
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=25.69 E-value=78 Score=21.17 Aligned_cols=27 Identities=11% Similarity=0.202 Sum_probs=13.2
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021664 154 KITSVDRDVNKIVEISQATQEEVTILR 180 (309)
Q Consensus 154 RI~~vD~klde~~eis~~i~~eV~~v~ 180 (309)
|...|.+|+++...=-....+||..++
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 444455555555444444455554443
No 234
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=25.61 E-value=1.7e+02 Score=20.28 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHhhhchhhh
Q 021664 166 VEISQATQEEVTILRGRSKLI 186 (309)
Q Consensus 166 ~eis~~i~~eV~~v~~dl~~i 186 (309)
..++.+++.-++.+...++.+
T Consensus 65 ~~~shel~~~l~~i~~~~~~l 85 (115)
T 3zrx_A 65 AGVSHDLRTPLTRIRLATEMM 85 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 334444444444444444444
No 235
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=25.28 E-value=2.7e+02 Score=22.41 Aligned_cols=66 Identities=11% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHH
Q 021664 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSV 193 (309)
Q Consensus 128 ~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v 193 (309)
.+-.....-.+...+.|.+.|..|..+|..+..++++..+.......+=..+...++....|++..
T Consensus 58 ~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 58 QAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 236
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=25.24 E-value=4.2e+02 Score=26.27 Aligned_cols=33 Identities=15% Similarity=0.090 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHH
Q 021664 189 EFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (309)
Q Consensus 189 Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (309)
|.+.+..-+..|..+|..+|....-...-+..+
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666677777666666555555554
No 237
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=25.21 E-value=2.9e+02 Score=24.93 Aligned_cols=34 Identities=9% Similarity=0.190 Sum_probs=27.6
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 021664 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSK 154 (309)
Q Consensus 121 VTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqR 154 (309)
=.||.+.+...-+.+++.+.+..|..+|+..-++
T Consensus 127 ke~K~~~~~~~k~qk~~~~~~~~l~kaKk~Y~~~ 160 (320)
T 3m3w_A 127 RASRAAEDGFRKAQKPWLKRLKEVEASKKSYHTA 160 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888889999999999999887664
No 238
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=25.17 E-value=91 Score=26.52 Aligned_cols=11 Identities=18% Similarity=0.323 Sum_probs=4.0
Q ss_pred HHHHHHHHhhh
Q 021664 171 ATQEEVTILRG 181 (309)
Q Consensus 171 ~i~~eV~~v~~ 181 (309)
.+..++.++|.
T Consensus 103 ~L~~d~EelR~ 113 (165)
T 1gs9_A 103 RLGADMEDVRG 113 (165)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 239
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=25.13 E-value=1.2e+02 Score=21.44 Aligned_cols=31 Identities=13% Similarity=0.133 Sum_probs=24.3
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 021664 149 RQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (309)
Q Consensus 149 rhLsqRI~~vD~klde~~eis~~i~~eV~~v 179 (309)
..|...||+|.++|...++--+.+.+++.-.
T Consensus 15 ~KLek~ID~LEdeL~~eKek~~~i~~eLD~t 45 (52)
T 2z5i_A 15 ARLKKLVDDLEDELYAQKLKYKAISEELDHA 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4577888999999988888888888777443
No 240
>3p8q_A GP5, head protein; virus procapsid particles, virus; 5.20A {Enterobacteria phage HK97} PDB: 3qpr_A
Probab=25.05 E-value=15 Score=34.54 Aligned_cols=64 Identities=14% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021664 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (309)
Q Consensus 138 eqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (309)
.++.++|..+-+++.+.-|.--.++++-.++...++++| .++..+++.++.-+..||.|+.+..
T Consensus 5 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~ 68 (385)
T 3p8q_A 5 ALIQKAIEESQQKMTQLFDAQKAEIESTGQVSKQLQSDL-------MKVQEELTKSGTRLFDLEQKLASGA 68 (385)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhcccc
Confidence 333444444444444333333333333334455555555 5555566666666666777766553
No 241
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=24.88 E-value=1.3e+02 Score=22.37 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhh
Q 021664 170 QATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (309)
Q Consensus 170 ~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (309)
=++++||.+++.+......=++..+++-..||.-+-++-..+|
T Consensus 10 YalkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~~n 52 (61)
T 3l4f_A 10 YALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMN 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4568888888888888888888888888888876666655544
No 242
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=24.80 E-value=14 Score=33.87 Aligned_cols=16 Identities=38% Similarity=0.518 Sum_probs=12.2
Q ss_pred ceeeeEcCcccceeecc
Q 021664 7 KLTFLVGAGILTSVLAK 23 (309)
Q Consensus 7 Kv~ILvGAG~~GSvl~k 23 (309)
||+|| |||++|+.+++
T Consensus 18 kilvl-GaG~vG~~~~~ 33 (365)
T 3abi_A 18 KVLIL-GAGNIGRAIAW 33 (365)
T ss_dssp EEEEE-CCSHHHHHHHH
T ss_pred EEEEE-CCCHHHHHHHH
Confidence 55555 99999998764
No 243
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=24.77 E-value=2.5e+02 Score=26.27 Aligned_cols=15 Identities=13% Similarity=0.067 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHhcC
Q 021664 61 LLAEVSSVQQELSHV 75 (309)
Q Consensus 61 L~aQV~~LaqEl~~L 75 (309)
|...+-...+..|.+
T Consensus 62 l~~~i~~~~~~ak~h 76 (346)
T 2nrj_A 62 LPGRIVQDQKNARAH 76 (346)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 444444444444443
No 244
>1lwu_A Fibrinogen alpha-1 chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: h.1.8.1 PDB: 1n73_A*
Probab=24.75 E-value=88 Score=26.08 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=17.4
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 021664 149 RQLSSKITSVDRDVNKIVEISQATQEEV 176 (309)
Q Consensus 149 rhLsqRI~~vD~klde~~eis~~i~~eV 176 (309)
..|-.||+.|..|+++|.......++.|
T Consensus 25 edLrrrIe~LkrKV~~Qvq~i~~Lq~nV 52 (119)
T 1lwu_A 25 RELERRIIHLQRRINMQLQQLTLLQHNI 52 (119)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788877777777665544444443
No 245
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=24.55 E-value=77 Score=21.19 Aligned_cols=28 Identities=7% Similarity=0.311 Sum_probs=17.4
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021664 154 KITSVDRDVNKIVEISQATQEEVTILRG 181 (309)
Q Consensus 154 RI~~vD~klde~~eis~~i~~eV~~v~~ 181 (309)
|...+.+|+++...--..+.+||..++.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 5555666777666666666777765554
No 246
>4gip_D Fusion glycoprotein F1; PIV5, viral fusion protein, membrane fusion, protease cleava activated form, ectodomain, trimer; HET: NAG; 2.00A {Simian virus 5}
Probab=24.47 E-value=53 Score=32.31 Aligned_cols=53 Identities=17% Similarity=0.268 Sum_probs=18.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHH
Q 021664 132 SVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD 195 (309)
Q Consensus 132 sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~ 195 (309)
+++..|..|..+|..|+++| |+...+-+.+++++.++-.++-+|..|+..++.
T Consensus 346 DIsteL~~vn~~L~~A~~~l-----------~~Sn~iL~svn~Ki~~~~~~~~~~~~~~~~~~~ 398 (409)
T 4gip_D 346 DISQNLAAVNKSLSDALQHL-----------AQSDTYLSAIEDKIEEILSKIYHIENEIARIKK 398 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHTC-----------------------
T ss_pred chhhhHHHHHHHHHHHHHHH-----------HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777665 444444445555555555555555555555443
No 247
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=24.43 E-value=3.3e+02 Score=23.21 Aligned_cols=76 Identities=14% Similarity=0.195 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHH---HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHH
Q 021664 125 SLSDACNSVARQLEDVYSSISAAQR---QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (309)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~~aKr---hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~L 200 (309)
...+-+..++.+|...-..-..|-| .|..-||++.++|+..++--+.|.+++...-.++..+..++..+..-|..|
T Consensus 74 ~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~ 152 (155)
T 2efr_A 74 KYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARL 152 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHh
No 248
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=24.16 E-value=87 Score=20.93 Aligned_cols=28 Identities=7% Similarity=0.150 Sum_probs=16.9
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021664 154 KITSVDRDVNKIVEISQATQEEVTILRG 181 (309)
Q Consensus 154 RI~~vD~klde~~eis~~i~~eV~~v~~ 181 (309)
|...+.+|+++...--...++||..++.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 5555666666666666666666655543
No 249
>2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus}
Probab=23.78 E-value=34 Score=25.34 Aligned_cols=22 Identities=27% Similarity=0.599 Sum_probs=19.8
Q ss_pred eEEecccCcCcchhhhhhhHHH
Q 021664 107 YVWWKGWKLPDMMFATRRSLSD 128 (309)
Q Consensus 107 YmwWKGws~SDlMfVTKRnms~ 128 (309)
.+.|||++-+|--|....||.+
T Consensus 32 lVKWkGy~~~~~TWEp~~~L~~ 53 (74)
T 2kvm_A 32 LVKWKGWPPKYSTWEPEEHILD 53 (74)
T ss_dssp EEEETTSCGGGCEEEETTTCSC
T ss_pred EEEEcCCCCccCeEeeHHHCCC
Confidence 7899999999999999999974
No 250
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=23.78 E-value=1.2e+02 Score=23.46 Aligned_cols=16 Identities=0% Similarity=0.237 Sum_probs=7.0
Q ss_pred HHHHHHhHHHHHHHHH
Q 021664 130 CNSVARQLEDVYSSIS 145 (309)
Q Consensus 130 v~sv~KqLeqVs~sL~ 145 (309)
|..+-..|+.+...+.
T Consensus 14 v~~I~~~i~~i~~~v~ 29 (127)
T 1ez3_A 14 VEEIRGFIDKIAENVE 29 (127)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 251
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Probab=23.68 E-value=17 Score=34.25 Aligned_cols=15 Identities=40% Similarity=0.563 Sum_probs=13.5
Q ss_pred eeeEcCcccceeecc
Q 021664 9 TFLVGAGILTSVLAK 23 (309)
Q Consensus 9 ~ILvGAG~~GSvl~k 23 (309)
+|+||+|.+|+|++.
T Consensus 20 ~IIVGsG~aG~v~A~ 34 (526)
T 3t37_A 20 IVIVGGGSAGSLLAA 34 (526)
T ss_dssp EEEECCSHHHHHHHH
T ss_pred EEEECccHHHHHHHH
Confidence 599999999999885
No 252
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=23.37 E-value=1e+02 Score=24.84 Aligned_cols=19 Identities=21% Similarity=0.448 Sum_probs=4.5
Q ss_pred HHHHhHhhhhhhHHHHHHH
Q 021664 150 QLSSKITSVDRDVNKIVEI 168 (309)
Q Consensus 150 hLsqRI~~vD~klde~~ei 168 (309)
+|+..|+.+...+++...+
T Consensus 3 ~l~~~~~~l~~~~~~~~~l 21 (182)
T 3kqg_A 3 TLNAQIPELKSDLEKASAL 21 (182)
T ss_dssp ----------CHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHH
Confidence 3455556665555544433
No 253
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=23.20 E-value=1.4e+02 Score=27.88 Aligned_cols=65 Identities=11% Similarity=0.151 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHh----hhhhhHHHH-HHHHHHHHHHHHHhhhchhhhhhh
Q 021664 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKIT----SVDRDVNKI-VEISQATQEEVTILRGRSKLIGDE 189 (309)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~----~vD~klde~-~eis~~i~~eV~~v~~dl~~ig~D 189 (309)
.....-+.+.+.++.+-.-|.-=...|..+++ .+-.+|.-. .|+...++.++.++|..|.-..++
T Consensus 104 ~~~~Lr~~L~~dlEelR~~L~Py~~el~~~l~~~~eelr~kL~Py~~EL~~~~~~~~eeLr~~L~py~ee 173 (307)
T 2l7b_A 104 ELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQAG 173 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHH
Confidence 34444455566666665555544444443333 333333322 245555566666777666544333
No 254
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=23.16 E-value=3.3e+02 Score=22.78 Aligned_cols=21 Identities=0% Similarity=0.246 Sum_probs=11.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q 021664 128 DACNSVARQLEDVYSSISAAQ 148 (309)
Q Consensus 128 ~Av~sv~KqLeqVs~sL~~aK 148 (309)
+-|..+...+++++..+...+
T Consensus 47 ~~ve~i~~~i~~i~~~v~el~ 67 (279)
T 3c98_B 47 EQVEEIRGFIDKIAENVEEVK 67 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666555443
No 255
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=22.87 E-value=69 Score=33.50 Aligned_cols=43 Identities=14% Similarity=0.346 Sum_probs=22.5
Q ss_pred ccCcCcchhh--hh----hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 021664 112 GWKLPDMMFA--TR----RSLSDACNSVARQLEDVYSSISAAQRQLSSK 154 (309)
Q Consensus 112 Gws~SDlMfV--TK----Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqR 154 (309)
.|-|++-|=. || -=|.+|+.-|++++.++...++++|+++...
T Consensus 602 ~w~f~~~~~~~~~~~~~weil~~ti~kv~~rv~~~~~~~~~~~~~~~~~ 650 (771)
T 1h2v_C 602 NWIFSSELSRDFTRLFVWEILHSTIRKMNKHVLKIQKELEEAKEKLARQ 650 (771)
T ss_dssp HHHTSGGGTTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHcCchhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677776500 11 1266777777777777777777777776653
No 256
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=22.87 E-value=1.2e+02 Score=24.82 Aligned_cols=53 Identities=15% Similarity=0.239 Sum_probs=33.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHh-------hh-------h--hhhHhHHHHHHHHHHHhhccCCCccceeccc
Q 021664 187 GDEFQSVRDIVQTLESKLIEI-------EG-------K--QDITTLGVKKLCDRARELENGRPTELVQASR 241 (309)
Q Consensus 187 g~Dv~~v~~~V~~Le~Ki~~i-------e~-------k--Qd~Tn~GV~~LC~f~~~~~~~~~~~~~Q~~~ 241 (309)
+.|.+.++.++..|-.| +.+ ++ . .-.+..=|..+|..++ .+.|-.|++-|+.-
T Consensus 81 ~~d~~~lr~~~~~l~~~-~~vv~l~~~~~~~~~v~~~~~~~~~a~~lvk~~~~~~g-GkGGGkp~~AQggg 149 (171)
T 2zvf_A 81 DADMQALQKLAERLAEK-GAVGCLMAKGEGKVFVVTFSGQKYDARELLREIGRVAK-GSGGGRKDVAQGAV 149 (171)
T ss_dssp SCCHHHHHHHHHHHHHT-TEEEEEEEECSSSEEEEEEESSSSCHHHHHHHHHHHHT-EECCBCSSEEEEEE
T ss_pred CCCHHHHHHHHHHHhcC-CCEEEEEEcCCCeEEEEEECCCCCCHHHHHHHHHHHcC-CCCCCcHHHcccCC
Confidence 67899999999888655 211 11 0 0122233666777764 47788899999853
No 257
>3ku3_B Hemagglutinin HA2 chain; viral envelope protein, viral fusion protein, protein, viral protein; HET: NAG; 1.60A {Influenza a virus} PDB: 3ku5_B* 3ku6_B* 3qqb_B* 3qqe_B* 3qqo_B* 3s11_B* 3s12_B* 3s13_B* 1jsm_B* 1jsn_B* 1jso_B* 2fk0_B* 3fku_B* 4fqi_B* 3gbm_B* 2ibx_B* 1rd8_B* 3gbn_B* 3lzf_B* 3r2x_B* ...
Probab=22.85 E-value=55 Score=28.80 Aligned_cols=58 Identities=10% Similarity=0.192 Sum_probs=42.6
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHHHH-------HHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 021664 119 MFATRRSLSDACNSVARQLEDVYSSISA-------AQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (309)
Q Consensus 119 MfVTKRnms~Av~sv~KqLeqVs~sL~~-------aKrhLsqRI~~vD~klde~~eis~~i~~eV 176 (309)
|=+.+++-..|...+++.|..|.+.... .=.++.+||.+|++|+|+...=.=.-.-|+
T Consensus 34 ~AAD~kSTQ~AId~It~KvN~iiekmn~qf~~v~~ef~~~e~ri~~l~~kvdD~~~DvwsYnAEL 98 (174)
T 3ku3_B 34 YAADKESTQKAFDGITNKVNSVIEKMNTQFEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAEL 98 (174)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHTSSCCCCCCCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHH
Confidence 5678999999999999999888765432 223577899999999998765444444443
No 258
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=22.83 E-value=2.8e+02 Score=21.75 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=25.4
Q ss_pred HHHHHhhhchhhhhhhHHHHHHH-------HHHHHHHHHHhhhh----hhhHhHHHHHHHHHH
Q 021664 174 EEVTILRGRSKLIGDEFQSVRDI-------VQTLESKLIEIEGK----QDITTLGVKKLCDRA 225 (309)
Q Consensus 174 ~eV~~v~~dl~~ig~Dv~~v~~~-------V~~Le~Ki~~ie~k----Qd~Tn~GV~~LC~f~ 225 (309)
+++.+=+.++.+|..++..++++ |..=+.-|++||++ ++....|...|-++.
T Consensus 14 ~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~ 76 (109)
T 3hd7_B 14 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 76 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444 44445566677766 344455555554443
No 259
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=22.80 E-value=73 Score=28.44 Aligned_cols=24 Identities=8% Similarity=0.003 Sum_probs=9.0
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHH
Q 021664 151 LSSKITSVDRDVNKIVEISQATQE 174 (309)
Q Consensus 151 LsqRI~~vD~klde~~eis~~i~~ 174 (309)
|..+++.|..++++...+...+++
T Consensus 81 L~~~~~~L~~~~~~L~~~~~~l~~ 104 (249)
T 3qao_A 81 LDMQRHLLIEKKQRIETMLATLDL 104 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 260
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=22.70 E-value=88 Score=23.95 Aligned_cols=44 Identities=9% Similarity=0.117 Sum_probs=21.0
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHH
Q 021664 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (309)
Q Consensus 151 LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~ 194 (309)
|..=++.-+.+|.+..++.+....++.+-...+.++...++.++
T Consensus 24 Lq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 24 LQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333444445555555555555554444445555554444
No 261
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=22.69 E-value=1.4e+02 Score=22.63 Aligned_cols=32 Identities=6% Similarity=0.007 Sum_probs=13.8
Q ss_pred HHhhhchhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021664 177 TILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (309)
Q Consensus 177 ~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (309)
+++...+..-.+-|+.++++|-.-...|++++
T Consensus 17 ~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~ 48 (78)
T 3efg_A 17 VELETRLSFQEQALTELSEALADARLTGARNA 48 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444443
No 262
>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.54 E-value=25 Score=26.15 Aligned_cols=25 Identities=24% Similarity=0.686 Sum_probs=21.5
Q ss_pred hheeeEEecccCcCcchhhhhhhHHH
Q 021664 103 VGYGYVWWKGWKLPDMMFATRRSLSD 128 (309)
Q Consensus 103 vGYgYmwWKGws~SDlMfVTKRnms~ 128 (309)
+=| ++.|||++-.|--|....||.+
T Consensus 26 ~~Y-lVKWkGy~~~~~TWEp~~nl~~ 50 (74)
T 2d9u_A 26 LEY-LVKWRGWSSKHNSWEPEENILD 50 (74)
T ss_dssp EEE-EEEETTSCTTTCEEEEGGGCCC
T ss_pred EEE-EEEECCCCCccCccccHHHCCC
Confidence 334 7999999999999999999986
No 263
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=22.54 E-value=3.1e+02 Score=22.16 Aligned_cols=59 Identities=15% Similarity=0.266 Sum_probs=35.8
Q ss_pred HHHHHH----hHHHHHHHHHHHH---HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhh
Q 021664 130 CNSVAR----QLEDVYSSISAAQ---RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGD 188 (309)
Q Consensus 130 v~sv~K----qLeqVs~sL~~aK---rhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~ 188 (309)
|-+++. ||.+.++.|..+. ---.+-+..|-+.|++-++-+..=+..|.++++.++....
T Consensus 16 CrNvT~lLq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq 81 (99)
T 3ni0_A 16 CRNTTHLLQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQ 81 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 445544 5566777777777 3345667777777777766655555556555555444433
No 264
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=22.51 E-value=1e+02 Score=28.81 Aligned_cols=54 Identities=11% Similarity=0.077 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHH
Q 021664 168 ISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAR 226 (309)
Q Consensus 168 is~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~ 226 (309)
+.+..++++.++.+-+++++.-+.++-.+|..=..-|+-+-.+|. ..-||-|+.
T Consensus 380 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 433 (463)
T 2xz3_A 380 LIHVLEQDQQRLITAINQTHYNLLNVASVVAQNRRGLDWLYIRLG-----FQSLCPTIN 433 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SCCHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHhC-----cCccchhhc
Confidence 356667777777777788888888888888766666777766654 334666664
No 265
>3m5g_B Hemagglutinin; influenza virus, envelope protein, fusion Pro HOST cell membrane, HOST membrane, membrane, transmembrane, viral protein; HET: NAG; 2.60A {Influenza a virus} PDB: 3m5h_B* 3m5i_B* 3m5j_B* 4dj6_B* 4dj7_B* 4dj8_B* 4fqv_B 1ti8_B*
Probab=22.34 E-value=28 Score=30.80 Aligned_cols=61 Identities=13% Similarity=0.128 Sum_probs=44.8
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 021664 119 MFATRRSLSDACNSVARQLEDVYSS-------ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (309)
Q Consensus 119 MfVTKRnms~Av~sv~KqLeqVs~s-------L~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v 179 (309)
|=+.+++-.+|...+++.|-.|.+. +...=.++.+||.+|++|+|++..=.=.-.-|+-.+
T Consensus 34 ~AAD~kSTQ~AId~IT~KvN~iIeKmN~qf~~i~~Ef~eve~ri~~l~~kvdD~~~DiWsYnaELLVl 101 (182)
T 3m5g_B 34 TAADYKSTQSAIDQITGKLNRLIGKTNQQFELIDNEFNEIEQQIGNVINWTRDAMTEIWSYNAELLVA 101 (182)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHSSCCCEEECCCSCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHH
Confidence 5678999999999999998887653 333334677899999999999865554445554433
No 266
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=22.33 E-value=4.6e+02 Score=24.12 Aligned_cols=67 Identities=12% Similarity=0.248 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHH
Q 021664 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (309)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~ 194 (309)
..|.+-.++|...||-+ .--|.=...-|..+|.|+++...+.+.+-+.+..+..+=.....|+..|.
T Consensus 152 ~~Lkk~~~~i~~~LelL----~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~ 218 (242)
T 3uux_B 152 SALKSFSQTLVNSLEFL----NIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQID 218 (242)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45666666666666543 33444445667788888888777777777777666665444444444443
No 267
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=22.28 E-value=2.6e+02 Score=24.06 Aligned_cols=25 Identities=12% Similarity=0.040 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhhH
Q 021664 166 VEISQATQEEVTILRGRSKLIGDEF 190 (309)
Q Consensus 166 ~eis~~i~~eV~~v~~dl~~ig~Dv 190 (309)
.++.+.++.++.++|..|+-..+|+
T Consensus 98 e~lr~~l~kdlEelr~kL~P~~eEL 122 (191)
T 1nfn_A 98 QAAQARLGADMEDVCGRLVQYRGEV 122 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444556666666666666655554
No 268
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=22.19 E-value=19 Score=31.15 Aligned_cols=14 Identities=29% Similarity=0.396 Sum_probs=11.5
Q ss_pred eeeEcCcccceeec
Q 021664 9 TFLVGAGILTSVLA 22 (309)
Q Consensus 9 ~ILvGAG~~GSvl~ 22 (309)
+++||||++|..++
T Consensus 5 V~IIGaG~~Gl~~A 18 (336)
T 1yvv_A 5 IAIIGTGIAGLSAA 18 (336)
T ss_dssp EEEECCSHHHHHHH
T ss_pred EEEECCcHHHHHHH
Confidence 68999999987654
No 269
>2ieq_A S glycoprotein, spike glycoprotein, peplomer protein, E2; membrane fusion, virus entry, six-HEL bundle, viral protein; 1.75A {Human coronavirus}
Probab=22.08 E-value=2.5e+02 Score=23.04 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhH-HHHHHHHHHHHHHHHH
Q 021664 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEF-QSVRDIVQTLESKLIE 206 (309)
Q Consensus 128 ~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv-~~v~~~V~~Le~Ki~~ 206 (309)
.|...++.-+..|..+|..+.+-++-==..+.+=.|=..++.+.+.+=+....-....+..++ +-+++.--.|=.+|+.
T Consensus 1 ~a~~nit~a~~~~n~Ai~~~~~gf~tv~~Al~kiQdVVN~q~~aLs~ll~QLn~NF~A~s~~lq~~fn~t~lni~~elD~ 80 (109)
T 2ieq_A 1 KAINNIVASFSSVNDAITQTAEAIHTVTIALNKIQDVVNQQGSALNHLTSQLRHNFQSGGRGSGRGGNLTYLNLSSELKQ 80 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------CCCCCHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchHHHHHhhhhHHHHHHHHHH
Q ss_pred hhhhhhhHhHHHHHHHHHHHhhccC
Q 021664 207 IEGKQDITTLGVKKLCDRARELENG 231 (309)
Q Consensus 207 ie~kQd~Tn~GV~~LC~f~~~~~~~ 231 (309)
+|.+-+--..=...|-+++..+...
T Consensus 81 LEa~A~~l~~~~~elq~~idn~n~t 105 (109)
T 2ieq_A 81 LEAKTASLFQTTVELQGLIDQINST 105 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
No 270
>1tr2_A Vinculin isoform 1; actin-binding, cell adhesion; 2.90A {Homo sapiens} PDB: 1st6_A
Probab=22.07 E-value=4.2e+02 Score=28.51 Aligned_cols=15 Identities=7% Similarity=0.262 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHhcC
Q 021664 61 LLAEVSSVQQELSHV 75 (309)
Q Consensus 61 L~aQV~~LaqEl~~L 75 (309)
|.+-++.|++.|+.+
T Consensus 576 L~~a~~~L~~~i~~~ 590 (1066)
T 1tr2_A 576 LQDSLKDLKARMQEA 590 (1066)
T ss_dssp HHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444455555555544
No 271
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=21.99 E-value=3.3e+02 Score=25.40 Aligned_cols=65 Identities=8% Similarity=0.192 Sum_probs=39.8
Q ss_pred cchhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021664 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG 181 (309)
Q Consensus 117 DlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~ 181 (309)
|-.=|.-+.|..+++...+--|+--..|...=..+..|+..+|+++++...-+..+.+||..++.
T Consensus 194 stDAVNv~QL~~s~~~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 258 (268)
T 2yo3_A 194 DTDAVNYAQLKRSVEEANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIKK 258 (268)
T ss_dssp TTSBCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccccchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44456666777766666554444444444444445555566777777777777777777766554
No 272
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=21.80 E-value=94 Score=28.75 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=16.2
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021664 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRG 181 (309)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~~eV~~v~~ 181 (309)
.|..+++.+..+.+...+..+..++|+..+++
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~Lke 89 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALRE 89 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555544333
No 273
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=21.64 E-value=3.2e+02 Score=23.51 Aligned_cols=7 Identities=14% Similarity=0.539 Sum_probs=2.7
Q ss_pred hhHhHHH
Q 021664 212 DITTLGV 218 (309)
Q Consensus 212 d~Tn~GV 218 (309)
..+.+||
T Consensus 139 em~KeGi 145 (175)
T 3lay_A 139 AMAQAGI 145 (175)
T ss_dssp HHHHTTC
T ss_pred HHHHhCC
Confidence 3333344
No 274
>4f23_A Hemagglutinin, H16; sialic acid, glycolysation, membrane, viral P; HET: NAG; 1.70A {Influenza a virus} PDB: 4fiu_A*
Probab=21.56 E-value=58 Score=33.05 Aligned_cols=48 Identities=17% Similarity=0.332 Sum_probs=38.6
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHH-------HHHHHHHHHhHhhhhhhHHHHH
Q 021664 119 MFATRRSLSDACNSVARQLEDVYSSI-------SAAQRQLSSKITSVDRDVNKIV 166 (309)
Q Consensus 119 MfVTKRnms~Av~sv~KqLeqVs~sL-------~~aKrhLsqRI~~vD~klde~~ 166 (309)
|=|-+++=.+|.+.++..|..+.|.. ...=.+|.+||++|++|+|+..
T Consensus 368 ~AAD~kSTQ~AId~It~k~N~iiekmn~qf~~i~~ef~~~e~ri~~l~~~~~D~~ 422 (515)
T 4f23_A 368 IAADKTSTQKAINEITTKINNIIEKMNGNYDSIRGEFNQVEKRINMIADRVDDAV 422 (515)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHTCCSCCSCCCCCCCTTCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 45789999999999999998887643 2223467899999999999974
No 275
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=21.51 E-value=2.6e+02 Score=21.01 Aligned_cols=47 Identities=21% Similarity=0.320 Sum_probs=27.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHH
Q 021664 158 VDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (309)
Q Consensus 158 vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki 204 (309)
++...++..++......++..++.|+...-.|-+.+-++=..||-.|
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EI 49 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEI 49 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666666666666666665555555555443
No 276
>2fyz_B Fusion protein, fusion glycoprotein F0; mumps virus fusion protein core, protein binding; 2.20A {Mumps virus} SCOP: h.3.2.1
Probab=21.49 E-value=88 Score=22.21 Aligned_cols=22 Identities=14% Similarity=0.336 Sum_probs=17.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHH
Q 021664 132 SVARQLEDVYSSISAAQRQLSS 153 (309)
Q Consensus 132 sv~KqLeqVs~sL~~aKrhLsq 153 (309)
+++.+|.++..+|++|+.||.+
T Consensus 11 DISseL~~iNnsL~~A~~~I~e 32 (48)
T 2fyz_B 11 DISTELSKVNASLQNTVKYIKE 32 (48)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888888888888754
No 277
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=21.41 E-value=4e+02 Score=23.04 Aligned_cols=67 Identities=7% Similarity=0.221 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhHhhhhhhHHHH-----HHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 021664 142 SSISAAQRQLSSKITSVDRDVNKI-----VEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (309)
Q Consensus 142 ~sL~~aKrhLsqRI~~vD~klde~-----~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (309)
.....+|..|-.=|-.+..+|++. .+-.+.+.+.+.+++.-|. +.|.+.++.....|+.....|..+
T Consensus 139 ~e~~e~kn~le~~i~~~~~~l~~~~~~~~~~~k~~i~~~l~~~~~wl~--~~d~~~~~~~~~~L~~~~~~i~~r 210 (227)
T 1u00_A 139 RMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDDAAAHLSEVAQ--GDDVDAIEQAIKNVDKQTQDFAAR 210 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHTT--SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555566666666542 2223444555555554443 456677776666666666655543
No 278
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=21.28 E-value=3.7e+02 Score=22.64 Aligned_cols=17 Identities=6% Similarity=0.110 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHhhh
Q 021664 193 VRDIVQTLESKLIEIEG 209 (309)
Q Consensus 193 v~~~V~~Le~Ki~~ie~ 209 (309)
.-.-|..+|.+.+.++.
T Consensus 162 ~~~~i~~lE~~~D~l~~ 178 (227)
T 2olt_A 162 MINELDIIEEDTDDLQI 178 (227)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33346677777776653
No 279
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=21.22 E-value=1.4e+02 Score=25.62 Aligned_cols=32 Identities=3% Similarity=-0.005 Sum_probs=17.8
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHH
Q 021664 146 AAQRQLSSKITSVDRDVNKIVEISQATQEEVT 177 (309)
Q Consensus 146 ~aKrhLsqRI~~vD~klde~~eis~~i~~eV~ 177 (309)
..+..|.++++.++.++++.++..+.+++.+.
T Consensus 79 ~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 110 (278)
T 1r8e_A 79 ELFAFYTEQERQIREKLDFLSALEQTISLVKK 110 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666655555555555443
No 280
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=21.20 E-value=4.2e+02 Score=23.27 Aligned_cols=33 Identities=9% Similarity=0.176 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHh
Q 021664 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKIT 156 (309)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~ 156 (309)
|.+.+...-+-|.+......+..+|+..-++-.
T Consensus 139 k~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~ 171 (312)
T 3abh_A 139 KEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACK 171 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777788888888888888887555443
No 281
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=21.04 E-value=3.6e+02 Score=22.44 Aligned_cols=64 Identities=6% Similarity=0.145 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHH---HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021664 136 QLEDVYSSISAAQR---QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (309)
Q Consensus 136 qLeqVs~sL~~aKr---hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (309)
||.+-++.|..+.. --.+-...|-+.|++-+.-. +.. +..+.++|..+++.+...+.++.++..
T Consensus 33 qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~---q~~-------vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 33 ELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG---QKK-------VEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666666652 23344455555555443332 333 444555566677666666676666654
No 282
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} SCOP: b.34.13.0 PDB: 3r93_A* 3svm_A* 3qo2_A*
Probab=21.03 E-value=28 Score=24.94 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=27.4
Q ss_pred eeEEecccCcCcchhhhhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 021664 106 GYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQ 148 (309)
Q Consensus 106 gYmwWKGws~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aK 148 (309)
-++.|||+.-+|--+-...||.++-. -|++.....+..|
T Consensus 22 YlVkWkGy~~~~~TWEp~~nl~~~~~----li~~f~~~~~~~k 60 (62)
T 3lwe_A 22 YKVRWKGYTSDDDTWEPEIHLEDCKE----VLLEFRKKIAENK 60 (62)
T ss_dssp EEEEETTSCGGGCEEEEHHHHTTCHH----HHHHHHHHHHHHH
T ss_pred EEEEEeCCCCcCCCeeeHhHhhccHH----HHHHHHHhhHhhc
Confidence 36889999988999999999965433 3455555555444
No 283
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=20.98 E-value=27 Score=32.23 Aligned_cols=14 Identities=29% Similarity=0.318 Sum_probs=11.2
Q ss_pred eeeEcCcccceeec
Q 021664 9 TFLVGAGILTSVLA 22 (309)
Q Consensus 9 ~ILvGAG~~GSvl~ 22 (309)
+|+||||++|-..+
T Consensus 13 VvIIGaGisGLsaA 26 (513)
T 4gde_A 13 VLVIGAGPTGLGAA 26 (513)
T ss_dssp EEEECCSHHHHHHH
T ss_pred EEEECCcHHHHHHH
Confidence 78999999886543
No 284
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=20.95 E-value=5.6e+02 Score=24.93 Aligned_cols=67 Identities=4% Similarity=0.053 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhh-----hchhh-----------hhhhHHHHHHHHHHHHHH
Q 021664 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR-----GRSKL-----------IGDEFQSVRDIVQTLESK 203 (309)
Q Consensus 140 Vs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~-----~dl~~-----------ig~Dv~~v~~~V~~Le~K 203 (309)
....|..||..|+ ++..++.+..-+...+++++.-+. ..+++ +.+=++.++.....|+..
T Consensus 27 A~~~l~~t~~~L~----~~~~~~~k~~Fl~~~l~~Q~~~L~~~ilr~~i~~~li~~e~~~~~f~~lv~~l~~~~~~L~~~ 102 (413)
T 4hpq_C 27 SNDHLTTTKLRIR----EWQKFQSKLHFVLDCIQQQTKFLSEILLREGIGRNLIEEEWSQTVLVRLVNDMKFWQNEITKM 102 (413)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555554 477888899999999999987664 44433 333344555556666776
Q ss_pred HHHhhhh
Q 021664 204 LIEIEGK 210 (309)
Q Consensus 204 i~~ie~k 210 (309)
|..+...
T Consensus 103 ~~~Lr~T 109 (413)
T 4hpq_C 103 MNKLDNI 109 (413)
T ss_dssp HHHHHTS
T ss_pred HHHHhCC
Confidence 6666543
No 285
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=20.95 E-value=62 Score=21.25 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=17.7
Q ss_pred HHHHHHHHhhhchhhhhhhHHHHHH
Q 021664 171 ATQEEVTILRGRSKLIGDEFQSVRD 195 (309)
Q Consensus 171 ~i~~eV~~v~~dl~~ig~Dv~~v~~ 195 (309)
.|+.|+..++..+..|.+++..|++
T Consensus 6 aikqelaaikkelaaikfelaaikq 30 (34)
T 3r4h_A 6 AIKQELAAIKKELAAIKFELAAIKQ 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4666777777777777777777653
No 286
>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C
Probab=20.91 E-value=36 Score=28.07 Aligned_cols=23 Identities=26% Similarity=0.586 Sum_probs=20.5
Q ss_pred eeEEecccCcCcchhhhhhhHHH
Q 021664 106 GYVWWKGWKLPDMMFATRRSLSD 128 (309)
Q Consensus 106 gYmwWKGws~SDlMfVTKRnms~ 128 (309)
-++.|||||-.+=-|-+..||..
T Consensus 60 YlVKWkG~s~~~nTWEp~enL~~ 82 (115)
T 2b2y_C 60 YLIKWKGWSHIHNTWETEETLKQ 82 (115)
T ss_dssp EEEEETTSCGGGCEEECHHHHHH
T ss_pred EEEEECCCCchhcccCCHHHcCC
Confidence 47899999999999999999875
No 287
>3u5c_K 40S ribosomal protein S10-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_K
Probab=20.86 E-value=45 Score=27.25 Aligned_cols=13 Identities=31% Similarity=0.271 Sum_probs=11.9
Q ss_pred HhHHHHHHHHHHH
Q 021664 214 TTLGVKKLCDRAR 226 (309)
Q Consensus 214 Tn~GV~~LC~f~~ 226 (309)
||+||.||.++.+
T Consensus 69 TnEGieyLR~yLh 81 (105)
T 3u5c_K 69 TEEGVEYLREYLN 81 (105)
T ss_dssp CHHHHHHHHHHTC
T ss_pred chhhHHHHHHHhC
Confidence 9999999999983
No 288
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=20.79 E-value=2.7e+02 Score=20.80 Aligned_cols=47 Identities=17% Similarity=0.323 Sum_probs=28.9
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHH
Q 021664 145 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 191 (309)
Q Consensus 145 ~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~ 191 (309)
.+-+..=.++|..|..++++..+....+..|...++..+..+..++.
T Consensus 21 RafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 21 RAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445667777777777777776666666666665555544443
No 289
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=20.77 E-value=1e+02 Score=25.89 Aligned_cols=56 Identities=11% Similarity=0.133 Sum_probs=33.0
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhH
Q 021664 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT 214 (309)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~T 214 (309)
.+.+-|++|.++||.|.-- ..-...|+|-+- +..+..=+..|+.+|.++..+|.+.
T Consensus 7 ~~K~Eiq~L~drLD~~~rK-----laaa~~rgd~~~----i~qf~~E~~~l~k~I~~lk~~q~~~ 62 (123)
T 2lf0_A 7 VEKNEIKRLSDRLDAIRHQ-----QADLSLVEAADK----YAELEKEKATLEAEIARLREVHSQK 62 (123)
T ss_dssp SHHHHHHHHHHHHHHHHHH-----HHHSCTTTCTTH----HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHhCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777776532 222233444332 3445555667778888888877653
No 290
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=20.75 E-value=2.3e+02 Score=23.00 Aligned_cols=34 Identities=6% Similarity=0.055 Sum_probs=16.2
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021664 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILR 180 (309)
Q Consensus 147 aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~ 180 (309)
.+..|.++++.++.++++..+..+.+++.+...+
T Consensus 96 ~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 129 (148)
T 3gpv_A 96 RLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYE 129 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555554444333
No 291
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=20.73 E-value=1.9e+02 Score=22.50 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=19.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhh
Q 021664 186 IGDEFQSVRDIVQTLESKLIEIEGK 210 (309)
Q Consensus 186 ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (309)
.+++++-++.-+..|+.|+..+|.-
T Consensus 13 VREEVevLKe~I~EL~e~~~qLE~E 37 (78)
T 1dip_A 13 VREEVEILKEQIRELVEKNSQLERE 37 (78)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888888888888888753
No 292
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=20.71 E-value=3.6e+02 Score=23.03 Aligned_cols=57 Identities=5% Similarity=0.048 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhh-chhhhhhhHHHH
Q 021664 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG-RSKLIGDEFQSV 193 (309)
Q Consensus 137 LeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~-dl~~ig~Dv~~v 193 (309)
.+..-+.+...-+.|..|+..+...+++..+.+..++...+++++ -++.+..+++.+
T Consensus 120 ~~~~~~~l~~~L~~l~~~l~~le~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 177 (202)
T 2p4w_A 120 INVKMRELAEFLHELNERIREIIEEKRELEEARILIETYIENTMRRLAEENRQIIEEI 177 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 343445666666777777777777777777777777777666544 344555554444
No 293
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=20.51 E-value=1e+02 Score=20.55 Aligned_cols=23 Identities=9% Similarity=0.203 Sum_probs=9.5
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHH
Q 021664 155 ITSVDRDVNKIVEISQATQEEVT 177 (309)
Q Consensus 155 I~~vD~klde~~eis~~i~~eV~ 177 (309)
...|.+|.++...--....+||.
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~ 25 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVA 25 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHH
Confidence 33344444444444444444443
No 294
>2yfa_A MCPS, methyl-accepting chemotaxis transducer; receptor, chemoreceptor; 1.80A {Pseudomonas putida} PDB: 2yfb_A
Probab=20.33 E-value=3.8e+02 Score=22.38 Aligned_cols=19 Identities=5% Similarity=0.018 Sum_probs=11.1
Q ss_pred HHHHhHHHHHHHHHHHHHH
Q 021664 132 SVARQLEDVYSSISAAQRQ 150 (309)
Q Consensus 132 sv~KqLeqVs~sL~~aKrh 150 (309)
.+.+.++++...|..++++
T Consensus 53 ~~~~~l~~~~~~l~~~~~~ 71 (258)
T 2yfa_A 53 NTLAKLDAFSKQQAYLATT 71 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666666666655554
No 295
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=20.21 E-value=2.4e+02 Score=20.07 Aligned_cols=23 Identities=9% Similarity=0.286 Sum_probs=9.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Q 021664 156 TSVDRDVNKIVEISQATQEEVTI 178 (309)
Q Consensus 156 ~~vD~klde~~eis~~i~~eV~~ 178 (309)
+..+..+++..+.-..|.+.+..
T Consensus 56 ~~~~~~~~~~~~~L~~i~~~L~~ 78 (97)
T 2vs0_A 56 QQLSPKVEKFAQLLEEIKQQLNS 78 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444333
Done!