Query 021667
Match_columns 309
No_of_seqs 253 out of 2378
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 04:45:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021667.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021667hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 6.9E-29 1.5E-33 207.4 5.4 262 13-285 72-361 (483)
2 KOG2120 SCF ubiquitin ligase, 99.9 7E-28 1.5E-32 193.5 9.5 232 9-252 94-349 (419)
3 KOG4341 F-box protein containi 99.8 3.2E-19 7E-24 149.9 4.4 193 11-231 164-387 (483)
4 cd00116 LRR_RI Leucine-rich re 99.5 7.2E-12 1.6E-16 108.2 18.9 192 84-285 80-293 (319)
5 PF12937 F-box-like: F-box-lik 99.4 4E-14 8.7E-19 85.2 2.3 46 13-59 1-46 (47)
6 cd00116 LRR_RI Leucine-rich re 99.4 2.7E-11 5.9E-16 104.6 19.7 189 85-278 108-315 (319)
7 KOG2120 SCF ubiquitin ligase, 99.4 4.9E-13 1.1E-17 108.5 5.4 171 84-262 209-383 (419)
8 KOG1909 Ran GTPase-activating 99.3 8.3E-11 1.8E-15 97.6 12.9 195 84-284 91-312 (382)
9 KOG1909 Ran GTPase-activating 99.3 1.1E-10 2.5E-15 96.8 12.9 232 42-283 20-283 (382)
10 KOG1947 Leucine rich repeat pr 99.3 1.6E-11 3.5E-16 112.0 8.8 162 95-262 174-346 (482)
11 KOG1947 Leucine rich repeat pr 99.2 7.2E-11 1.6E-15 107.7 10.7 180 101-285 153-339 (482)
12 KOG3207 Beta-tubulin folding c 99.0 5.6E-10 1.2E-14 95.3 6.5 141 108-256 120-261 (505)
13 PLN00113 leucine-rich repeat r 98.9 2.3E-09 5E-14 106.2 8.5 87 189-282 210-296 (968)
14 PLN00113 leucine-rich repeat r 98.9 4.2E-09 9.2E-14 104.3 8.1 180 84-282 92-272 (968)
15 smart00256 FBOX A Receptor for 98.9 1.8E-09 4E-14 62.8 3.2 40 16-56 1-40 (41)
16 PF00646 F-box: F-box domain; 98.9 2.8E-10 6E-15 68.8 -0.6 44 12-56 2-45 (48)
17 KOG3207 Beta-tubulin folding c 98.8 2.1E-09 4.5E-14 91.9 1.6 142 103-253 140-283 (505)
18 KOG3665 ZYG-1-like serine/thre 98.7 3.1E-08 6.6E-13 92.9 6.7 144 108-262 121-271 (699)
19 PF14580 LRR_9: Leucine-rich r 98.7 5.8E-09 1.2E-13 80.8 1.5 105 136-254 20-126 (175)
20 KOG4194 Membrane glycoprotein 98.6 4E-09 8.6E-14 93.5 -1.6 160 108-284 268-430 (873)
21 PF14580 LRR_9: Leucine-rich r 98.6 4E-08 8.6E-13 76.2 2.7 138 99-250 7-149 (175)
22 KOG3665 ZYG-1-like serine/thre 98.5 7.3E-07 1.6E-11 83.8 8.9 166 72-248 108-282 (699)
23 COG5238 RNA1 Ran GTPase-activa 98.4 8.3E-06 1.8E-10 66.3 13.1 94 135-230 157-256 (388)
24 COG5238 RNA1 Ran GTPase-activa 98.3 1.1E-05 2.5E-10 65.5 11.1 197 54-260 32-261 (388)
25 KOG4194 Membrane glycoprotein 98.3 7.6E-07 1.7E-11 79.4 4.6 162 85-260 78-240 (873)
26 KOG2982 Uncharacterized conser 98.0 5.1E-06 1.1E-10 68.3 3.1 109 111-226 47-156 (418)
27 KOG3864 Uncharacterized conser 97.9 1.2E-05 2.7E-10 62.4 4.3 94 136-236 102-196 (221)
28 KOG0618 Serine/threonine phosp 97.9 4.6E-06 9.9E-11 78.2 2.2 144 95-256 370-515 (1081)
29 PLN03210 Resistant to P. syrin 97.9 1.2E-05 2.6E-10 80.9 5.2 36 216-252 778-813 (1153)
30 KOG3864 Uncharacterized conser 97.7 5.9E-05 1.3E-09 58.8 5.0 73 95-169 112-185 (221)
31 PLN03210 Resistant to P. syrin 97.7 3.1E-05 6.7E-10 78.1 4.0 59 191-252 846-904 (1153)
32 KOG2997 F-box protein FBX9 [Ge 97.7 1.6E-05 3.4E-10 65.7 1.5 48 10-58 104-156 (366)
33 KOG2982 Uncharacterized conser 97.6 3.2E-05 7E-10 63.8 2.5 169 84-256 70-264 (418)
34 PF13855 LRR_8: Leucine rich r 97.5 7.7E-06 1.7E-10 51.9 -1.8 38 214-252 23-60 (61)
35 KOG0281 Beta-TrCP (transducin 97.5 3.3E-05 7.2E-10 64.4 0.9 50 10-60 72-125 (499)
36 KOG2123 Uncharacterized conser 97.5 2.5E-05 5.5E-10 63.7 0.2 98 136-246 20-122 (388)
37 KOG0444 Cytoskeletal regulator 97.4 2.4E-05 5.3E-10 70.8 -0.5 63 189-255 243-305 (1255)
38 KOG0444 Cytoskeletal regulator 97.4 2.1E-05 4.5E-10 71.2 -1.0 42 215-258 221-262 (1255)
39 KOG0618 Serine/threonine phosp 97.3 3E-05 6.4E-10 73.0 -1.2 46 214-261 450-496 (1081)
40 KOG1259 Nischarin, modulator o 97.3 0.00033 7E-09 58.1 4.7 39 190-228 373-411 (490)
41 KOG1859 Leucine-rich repeat pr 97.2 7.7E-05 1.7E-09 68.7 0.3 61 189-254 185-245 (1096)
42 KOG1259 Nischarin, modulator o 97.2 0.00013 2.8E-09 60.4 1.4 62 189-255 305-366 (490)
43 KOG4308 LRR-containing protein 97.2 0.0001 2.2E-09 66.6 0.6 174 84-262 114-311 (478)
44 KOG2123 Uncharacterized conser 97.2 0.00017 3.7E-09 59.1 1.7 102 108-222 18-123 (388)
45 PLN03150 hypothetical protein; 97.1 0.0011 2.4E-08 62.6 6.4 84 137-229 420-503 (623)
46 PLN03215 ascorbic acid mannose 97.1 0.0004 8.7E-09 60.1 3.1 38 11-49 2-40 (373)
47 KOG2739 Leucine-rich acidic nu 97.1 8.6E-05 1.9E-09 60.1 -1.0 35 134-169 64-100 (260)
48 KOG0617 Ras suppressor protein 97.1 1.5E-05 3.2E-10 60.5 -5.0 38 214-253 148-185 (264)
49 PF13855 LRR_8: Leucine rich r 97.0 9.8E-05 2.1E-09 46.7 -0.9 60 216-281 1-60 (61)
50 KOG4308 LRR-containing protein 96.8 0.00023 5E-09 64.4 -0.4 167 108-278 114-298 (478)
51 PF12799 LRR_4: Leucine Rich r 96.8 0.0012 2.5E-08 38.6 2.4 34 192-227 2-35 (44)
52 KOG4237 Extracellular matrix p 96.8 0.00029 6.3E-09 60.5 -0.3 18 188-205 271-288 (498)
53 KOG2739 Leucine-rich acidic nu 96.8 0.00057 1.2E-08 55.5 1.2 106 134-248 42-150 (260)
54 PLN03150 hypothetical protein; 96.8 0.0032 6.9E-08 59.5 6.4 107 111-227 420-526 (623)
55 PRK15387 E3 ubiquitin-protein 96.7 0.0023 5.1E-08 61.2 5.2 15 190-204 301-315 (788)
56 KOG1859 Leucine-rich repeat pr 96.7 0.00031 6.8E-09 64.9 -0.7 108 129-253 181-291 (1096)
57 smart00367 LRR_CC Leucine-rich 96.7 0.002 4.4E-08 32.8 2.6 23 190-212 1-24 (26)
58 smart00367 LRR_CC Leucine-rich 96.6 0.0027 5.8E-08 32.3 2.8 24 108-131 1-24 (26)
59 PF12799 LRR_4: Leucine Rich r 96.6 0.0026 5.6E-08 37.1 3.0 37 217-255 2-38 (44)
60 KOG4579 Leucine-rich repeat (L 96.4 0.004 8.6E-08 45.8 3.3 65 185-253 71-135 (177)
61 PF13516 LRR_6: Leucine Rich r 96.2 0.0056 1.2E-07 30.4 2.4 23 190-212 1-23 (24)
62 PRK15387 E3 ubiquitin-protein 96.1 0.0046 1E-07 59.2 3.0 64 191-261 402-465 (788)
63 KOG1644 U2-associated snRNP A' 96.0 0.0037 8E-08 49.0 1.8 90 131-227 60-151 (233)
64 KOG0472 Leucine-rich repeat pr 96.0 0.0054 1.2E-07 53.1 2.8 115 129-259 429-546 (565)
65 PRK15370 E3 ubiquitin-protein 95.8 0.037 7.9E-07 53.3 7.7 12 242-253 368-379 (754)
66 KOG0617 Ras suppressor protein 95.5 0.00017 3.6E-09 54.9 -7.1 109 108-229 78-186 (264)
67 PF13516 LRR_6: Leucine Rich r 95.3 0.016 3.4E-07 28.7 1.9 23 134-156 1-23 (24)
68 KOG1644 U2-associated snRNP A' 95.2 0.0065 1.4E-07 47.7 0.6 35 134-169 87-122 (233)
69 PF13013 F-box-like_2: F-box-l 95.1 0.032 6.9E-07 39.5 3.7 30 12-42 21-50 (109)
70 smart00368 LRR_RI Leucine rich 95.0 0.041 8.8E-07 28.5 3.1 25 191-215 2-26 (28)
71 KOG4658 Apoptotic ATPase [Sign 94.5 0.03 6.5E-07 54.8 3.1 42 105-148 567-608 (889)
72 COG4886 Leucine-rich repeat (L 94.3 0.034 7.4E-07 49.5 2.8 61 189-254 230-290 (394)
73 KOG0274 Cdc4 and related F-box 94.1 0.02 4.4E-07 52.8 0.9 48 8-56 103-151 (537)
74 PRK15370 E3 ubiquitin-protein 93.7 0.14 2.9E-06 49.5 5.8 98 135-254 220-317 (754)
75 KOG0531 Protein phosphatase 1, 93.7 0.016 3.5E-07 52.0 -0.4 106 108-229 94-199 (414)
76 smart00368 LRR_RI Leucine rich 93.5 0.12 2.6E-06 26.6 2.9 24 135-158 2-25 (28)
77 KOG4237 Extracellular matrix p 93.4 0.049 1.1E-06 47.3 2.1 89 156-253 270-358 (498)
78 COG4886 Leucine-rich repeat (L 93.2 0.056 1.2E-06 48.2 2.2 83 109-204 116-199 (394)
79 KOG4658 Apoptotic ATPase [Sign 93.1 0.1 2.2E-06 51.3 3.9 110 108-227 544-653 (889)
80 KOG3763 mRNA export factor TAP 92.8 0.16 3.5E-06 46.0 4.4 87 153-247 211-307 (585)
81 KOG0472 Leucine-rich repeat pr 92.8 0.089 1.9E-06 45.9 2.7 112 106-231 432-543 (565)
82 KOG0531 Protein phosphatase 1, 92.7 0.037 8.1E-07 49.7 0.4 131 106-256 115-247 (414)
83 KOG3763 mRNA export factor TAP 92.7 0.22 4.7E-06 45.2 5.1 93 102-196 211-306 (585)
84 PRK15386 type III secretion pr 91.8 0.42 9.1E-06 42.5 5.7 32 216-251 156-187 (426)
85 PRK15386 type III secretion pr 91.4 0.097 2.1E-06 46.3 1.4 31 191-226 156-187 (426)
86 PF09372 PRANC: PRANC domain; 87.9 0.4 8.7E-06 33.3 2.1 24 11-34 70-93 (97)
87 PF13504 LRR_7: Leucine rich r 87.8 0.51 1.1E-05 21.1 1.7 11 192-202 2-12 (17)
88 PF07723 LRR_2: Leucine Rich R 87.2 0.5 1.1E-05 23.9 1.6 25 192-216 1-26 (26)
89 KOG3735 Tropomodulin and leiom 87.1 2 4.3E-05 36.7 6.0 99 124-225 187-292 (353)
90 KOG4579 Leucine-rich repeat (L 80.5 0.96 2.1E-05 33.7 1.3 86 161-254 28-113 (177)
91 PF00560 LRR_1: Leucine Rich R 77.4 1.5 3.3E-05 20.9 1.1 12 193-204 2-13 (22)
92 KOG2502 Tub family proteins [G 75.6 2.2 4.8E-05 36.5 2.3 50 11-60 43-103 (355)
93 PF12586 DUF3760: Protein of u 74.0 1.6 3.6E-05 25.5 0.8 40 18-59 6-45 (46)
94 KOG3735 Tropomodulin and leiom 71.6 10 0.00022 32.6 5.3 82 180-262 187-276 (353)
95 smart00370 LRR Leucine-rich re 65.0 5.9 0.00013 19.5 1.7 14 191-204 2-15 (26)
96 smart00369 LRR_TYP Leucine-ric 65.0 5.9 0.00013 19.5 1.7 14 191-204 2-15 (26)
97 KOG3926 F-box proteins [Amino 63.9 3.2 6.9E-05 34.3 0.8 47 10-57 199-246 (332)
98 KOG0532 Leucine-rich repeat (L 61.1 3.1 6.7E-05 38.4 0.3 36 218-255 213-248 (722)
99 PF13306 LRR_5: Leucine rich r 54.9 3 6.5E-05 30.2 -0.7 99 132-250 9-112 (129)
100 smart00365 LRR_SD22 Leucine-ri 51.9 14 0.0003 18.6 1.7 14 191-204 2-15 (26)
101 KOG0532 Leucine-rich repeat (L 39.9 2.3 4.9E-05 39.3 -3.8 107 133-255 119-225 (722)
102 PF15137 DUF4571: Domain of un 33.7 58 0.0013 25.6 3.3 46 203-250 84-129 (219)
103 smart00364 LRR_BAC Leucine-ric 28.2 37 0.00079 17.2 1.0 14 242-255 3-16 (26)
104 KOG4408 Putative Mg2+ and Co2+ 27.9 17 0.00037 31.2 -0.4 46 12-58 7-52 (386)
105 PF03382 DUF285: Mycoplasma pr 25.6 39 0.00085 24.3 1.2 11 208-218 78-88 (120)
106 PF08004 DUF1699: Protein of u 25.5 97 0.0021 22.6 3.1 33 217-250 18-50 (131)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.95 E-value=6.9e-29 Score=207.43 Aligned_cols=262 Identities=19% Similarity=0.265 Sum_probs=182.2
Q ss_pred CCCCcHHHHHHHhccCChhhhhhhhhhhcHHHHHhccCCCCCceeecCCCCCCcccchhHHHHHHHHHhccCCCceEEec
Q 021667 13 WTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSINI 92 (309)
Q Consensus 13 ~~~LP~eiL~~If~~L~~~d~~~~~~~Vcr~W~~~~~~~~l~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l 92 (309)
.-.||+|++..||++|+.+.+. ++++||+.|+..+.+..-|+++++....-. .....+. ..+.+.++.++++.+
T Consensus 72 ~~~LPpEl~lkvFS~LDtksl~-r~a~~c~~~n~~AlD~~~~q~idL~t~~rD-v~g~VV~----~~~~Rcgg~lk~LSl 145 (483)
T KOG4341|consen 72 SRSLPPELLLKVFSMLDTKSLC-RAAQCCTMWNKLALDGSCWQHIDLFTFQRD-VDGGVVE----NMISRCGGFLKELSL 145 (483)
T ss_pred cccCCHHHHHHHHHHHhHHHHH-HHHHHHHHhhhhhhccccceeeehhcchhc-CCCccee----hHhhhhccccccccc
Confidence 3469999999999999999995 999999999999999999999999875422 2233333 344444677888877
Q ss_pred c--ccCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCC-CCCHHHHHHHHhcCCCCcEEEecc
Q 021667 93 E--YFGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYC-SLSQEALEAVGSLCPLLRSFKLNN 169 (309)
Q Consensus 93 ~--~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~l~~ 169 (309)
. ..+.++.+..+...||++++|.+.+|..+|+..+..+.+.|++|++|+|..| .+++..++.+++.||+|+.|++++
T Consensus 146 rG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSw 225 (483)
T KOG4341|consen 146 RGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSW 225 (483)
T ss_pred cccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhcc
Confidence 4 3667777788888888888888888888888888888888888888888887 778888888888888888888877
Q ss_pred CCCCCC-C--------------------cccchhHHHHHhcCCCCcEEEecCC-ccChHHHHHHHHhCCCCCeeecCCCC
Q 021667 170 RGHRCP-K--------------------IECDDDAKAIAENMHGLRHLQLFGN-ELTNVGLQAILDACPHLESLDLRQCF 227 (309)
Q Consensus 170 ~~~~~~-~--------------------~~~~~~~~~l~~~~~~L~~L~l~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~ 227 (309)
|.--.. . -...+.+..+...++.+..+++..| .++|.++..+...|.+|+.|+.++|.
T Consensus 226 c~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t 305 (483)
T KOG4341|consen 226 CPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCT 305 (483)
T ss_pred CchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCC
Confidence 321100 0 0012222223334444555555555 57777777777677777777777777
Q ss_pred CcCc--hhHHHHHhHhccCceecCCCC-CCchhhhhhhhhhccCCcCCCCCCCCccccCCC
Q 021667 228 NVNL--VGKLGKICAERIRDLRHPNDS-THDYEFGADFQDFCWSSVEDYPSGISDIELVSD 285 (309)
Q Consensus 228 ~~~~--~~~l~~~~~~~L~~L~l~~~~-~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~d 285 (309)
.+++ ..++..+++ +|+.|-+++|. ++|.||+.+. .. ++.|+++|...|..++|
T Consensus 306 ~~~d~~l~aLg~~~~-~L~~l~l~~c~~fsd~~ft~l~-rn---~~~Le~l~~e~~~~~~d 361 (483)
T KOG4341|consen 306 DITDEVLWALGQHCH-NLQVLELSGCQQFSDRGFTMLG-RN---CPHLERLDLEECGLITD 361 (483)
T ss_pred CCchHHHHHHhcCCC-ceEEEeccccchhhhhhhhhhh-cC---Chhhhhhcccccceehh
Confidence 7666 446667777 77777777777 7777777765 22 33444444444444333
No 2
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7e-28 Score=193.46 Aligned_cols=232 Identities=22% Similarity=0.302 Sum_probs=175.2
Q ss_pred CCCCCCCCcHHHHHHHhccCChhhhhhhhhhhcHHHHHhccCCCCCceeecCCCCCCcccchhHHHHHHHHH--------
Q 021667 9 ESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDMDHDLEKMCRHAV-------- 80 (309)
Q Consensus 9 ~~~~~~~LP~eiL~~If~~L~~~d~~~~~~~Vcr~W~~~~~~~~l~~~i~l~~~~~~~~~~~~~~~~~~~~~-------- 80 (309)
+...|..|||||+..||+.|..++++ +++.|||||++++.+.++|..+++.... ..+.....++++.+
T Consensus 94 pgv~~~slpDEill~IFs~L~kk~LL-~~~~VC~Rfyr~~~de~lW~~lDl~~r~---i~p~~l~~l~~rgV~v~Rlar~ 169 (419)
T KOG2120|consen 94 PGVSWDSLPDEILLGIFSCLCKKELL-KVSGVCKRFYRLASDESLWQTLDLTGRN---IHPDVLGRLLSRGVIVFRLARS 169 (419)
T ss_pred CCCCcccCCHHHHHHHHHhccHHHHH-HHHHHHHHHhhccccccceeeeccCCCc---cChhHHHHHHhCCeEEEEcchh
Confidence 34569999999999999999999996 9999999999999999999999998755 34444444433221
Q ss_pred -----------hccCCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCC-CC
Q 021667 81 -----------DRSNGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYC-SL 147 (309)
Q Consensus 81 -----------~~~~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~ 147 (309)
......++.++++. .++.+.+..+...|.+|+.|.|.+. .+.|.....+++ -.+|++|+|+.| ++
T Consensus 170 ~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~iAk-N~~L~~lnlsm~sG~ 247 (419)
T KOG2120|consen 170 FMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTIAK-NSNLVRLNLSMCSGF 247 (419)
T ss_pred hhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHHhc-cccceeecccccccc
Confidence 12234577777764 5677778888888999999888854 777766665554 678889999988 88
Q ss_pred CHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCC--ccChHHHHHHHHhCCCCCeeecCC
Q 021667 148 SQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGN--ELTNVGLQAILDACPHLESLDLRQ 225 (309)
Q Consensus 148 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~--~i~~~~l~~l~~~~~~L~~L~l~~ 225 (309)
+..++..+..+|..|..|+++.|+...+. .-.++..--++|+.|+|+|+ .+.+..+..+.+.||+|.+|||++
T Consensus 248 t~n~~~ll~~scs~L~~LNlsWc~l~~~~-----Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD 322 (419)
T KOG2120|consen 248 TENALQLLLSSCSRLDELNLSWCFLFTEK-----VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSD 322 (419)
T ss_pred chhHHHHHHHhhhhHhhcCchHhhccchh-----hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccc
Confidence 88888888888899999999887766432 12233333477888888887 677777888888888888888888
Q ss_pred CCCcCc-hhHHHHHhHhccCceecCCCC
Q 021667 226 CFNVNL-VGKLGKICAERIRDLRHPNDS 252 (309)
Q Consensus 226 c~~~~~-~~~l~~~~~~~L~~L~l~~~~ 252 (309)
|..+++ .......++ .|++|.++.|.
T Consensus 323 ~v~l~~~~~~~~~kf~-~L~~lSlsRCY 349 (419)
T KOG2120|consen 323 SVMLKNDCFQEFFKFN-YLQHLSLSRCY 349 (419)
T ss_pred ccccCchHHHHHHhcc-hheeeehhhhc
Confidence 888776 223334566 78888888887
No 3
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.76 E-value=3.2e-19 Score=149.87 Aligned_cols=193 Identities=21% Similarity=0.273 Sum_probs=102.4
Q ss_pred CCCCCCcHHHHHHHhccCChhhhhhhhhhhcHHHHHhccCC-CCCceeecCCCCCCcccchhHHHHHHHHHhccCCCceE
Q 021667 11 CDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDP-AMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLS 89 (309)
Q Consensus 11 ~~~~~LP~eiL~~If~~L~~~d~~~~~~~Vcr~W~~~~~~~-~l~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 89 (309)
+.|++| ++...+ +++..... .++.+|+.|+.+...+ ..|....+. .+...|++++.
T Consensus 164 pnIehL--~l~gc~--~iTd~s~~-sla~~C~~l~~l~L~~c~~iT~~~Lk------------------~la~gC~kL~~ 220 (483)
T KOG4341|consen 164 PNIEHL--ALYGCK--KITDSSLL-SLARYCRKLRHLNLHSCSSITDVSLK------------------YLAEGCRKLKY 220 (483)
T ss_pred Cchhhh--hhhcce--eccHHHHH-HHHHhcchhhhhhhcccchhHHHHHH------------------HHHHhhhhHHH
Confidence 345555 444444 67777774 9999999999998865 555544333 22223444444
Q ss_pred Eecc--ccC--------------------------ChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEE
Q 021667 90 INIE--YFG--------------------------TDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELE 141 (309)
Q Consensus 90 l~l~--~~~--------------------------~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 141 (309)
++++ ..+ .++.+..+..+++-+..+++..|..+|+.++..+...|..|+.|+
T Consensus 221 lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~ 300 (483)
T KOG4341|consen 221 LNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLC 300 (483)
T ss_pred hhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhc
Confidence 4442 233 334444444444445555555555555555555555555555555
Q ss_pred ecCC-CCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCC-ccChHHHHHHHHhCCCCC
Q 021667 142 LSYC-SLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGN-ELTNVGLQAILDACPHLE 219 (309)
Q Consensus 142 L~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~i~~~~l~~l~~~~~~L~ 219 (309)
.+++ .+++..+..+..++++|+.|-+..|.. -.+..+..++++++.|+.+++.++ .+++..+..+..+||.|+
T Consensus 301 ~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~-----fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr 375 (483)
T KOG4341|consen 301 YSSCTDITDEVLWALGQHCHNLQVLELSGCQQ-----FSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR 375 (483)
T ss_pred ccCCCCCchHHHHHHhcCCCceEEEeccccch-----hhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence 5555 455555555555555555555544221 124445555555555555555555 444444555555555555
Q ss_pred eeecCCCCCcCc
Q 021667 220 SLDLRQCFNVNL 231 (309)
Q Consensus 220 ~L~l~~c~~~~~ 231 (309)
.|.++.|..+++
T Consensus 376 ~lslshce~itD 387 (483)
T KOG4341|consen 376 VLSLSHCELITD 387 (483)
T ss_pred cCChhhhhhhhh
Confidence 555555555554
No 4
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.46 E-value=7.2e-12 Score=108.16 Aligned_cols=192 Identities=19% Similarity=0.181 Sum_probs=123.0
Q ss_pred CCCceEEeccc-cCCh---HHHHHHHhcCCCccEEEeCCCCCCCHHHHHHH---HhcC-CCcCEEEecCCCCCHHHHHH-
Q 021667 84 NGQLLSINIEY-FGTD---ELLQYIANRSRNLRNLRLVSCYNISDQGFCEA---IKGF-PLLEELELSYCSLSQEALEA- 154 (309)
Q Consensus 84 ~~~l~~l~l~~-~~~~---~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~-~~L~~L~L~~~~~~~~~~~~- 154 (309)
.+.++.++++. .+.. ..+..+... ++|++|+++++ .+++.+...+ ...+ ++|++|++++|.++......
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 67888888854 3332 233334443 56888888865 5665554443 3345 78888888888776443333
Q ss_pred --HHhcCCCCcEEEeccCCCCCCCcccchhHHHH---HhcCCCCcEEEecCCccChHHHHHH---HHhCCCCCeeecCCC
Q 021667 155 --VGSLCPLLRSFKLNNRGHRCPKIECDDDAKAI---AENMHGLRHLQLFGNELTNVGLQAI---LDACPHLESLDLRQC 226 (309)
Q Consensus 155 --l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~i~~~~l~~l---~~~~~~L~~L~l~~c 226 (309)
....+++|++|++.++.+.. ..+..+ ...+++|++|++++|.+++.+...+ +..+++|++|++++|
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~------~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGD------AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCch------HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence 33456788888888755542 222222 2255688888888888877665544 334677888888887
Q ss_pred CCcCc-hhHHHHHh----HhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccCCC
Q 021667 227 FNVNL-VGKLGKIC----AERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSD 285 (309)
Q Consensus 227 ~~~~~-~~~l~~~~----~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~d 285 (309)
..... ...+...+ + .|++|++++|.+++.+...+. +.+...+.+..+|+++..+.++
T Consensus 232 ~l~~~~~~~l~~~~~~~~~-~L~~L~l~~n~i~~~~~~~l~-~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 232 NLTDAGAAALASALLSPNI-SLLTLSLSCNDITDDGAKDLA-EVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred cCchHHHHHHHHHHhccCC-CceEEEccCCCCCcHHHHHHH-HHHhcCCCccEEECCCCCCcHH
Confidence 64331 33333333 4 788888888888888777766 5555667778888887766443
No 5
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.44 E-value=4e-14 Score=85.22 Aligned_cols=46 Identities=30% Similarity=0.679 Sum_probs=40.3
Q ss_pred CCCCcHHHHHHHhccCChhhhhhhhhhhcHHHHHhccCCCCCceeec
Q 021667 13 WTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDM 59 (309)
Q Consensus 13 ~~~LP~eiL~~If~~L~~~d~~~~~~~Vcr~W~~~~~~~~l~~~i~l 59 (309)
|..||+|++.+||+||+..|+. ++++|||+|+.++.++.+|+++.+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~-~~~~vcr~w~~~~~~~~lW~~~~~ 46 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLL-RLSLVCRRWRRIANDNSLWRRLCL 46 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHH-HHTTSSHHHHHHHTCCCHHHHHC-
T ss_pred ChHhHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHHCChhhhhhhcc
Confidence 6799999999999999999995 999999999999998899998764
No 6
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.43 E-value=2.7e-11 Score=104.58 Aligned_cols=189 Identities=17% Similarity=0.112 Sum_probs=116.2
Q ss_pred CCceEEeccc-cCChHHHHHHH---hcC-CCccEEEeCCCCCCCHHH---HHHHHhcCCCcCEEEecCCCCCHHHHHHHH
Q 021667 85 GQLLSINIEY-FGTDELLQYIA---NRS-RNLRNLRLVSCYNISDQG---FCEAIKGFPLLEELELSYCSLSQEALEAVG 156 (309)
Q Consensus 85 ~~l~~l~l~~-~~~~~~l~~l~---~~~-~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~ 156 (309)
+++++|++.. .+++..+..+. ..+ ++|+.|++.+| .++..+ +...+..+++|++|++++|.+++.++..+.
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 186 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALA 186 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCC-cCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHH
Confidence 5688888843 45544444332 234 78888888876 455333 333445567888888888877766665554
Q ss_pred hc---CCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhC----CCCCeeecCCCCCc
Q 021667 157 SL---CPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDAC----PHLESLDLRQCFNV 229 (309)
Q Consensus 157 ~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~----~~L~~L~l~~c~~~ 229 (309)
.. +++|+.|+++++.+... . ...+......+++|++|++++|.+++.++..++..+ +.|++|++++|...
T Consensus 187 ~~l~~~~~L~~L~L~~n~i~~~--~-~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 187 EGLKANCNLEVLDLNNNGLTDE--G-ASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHhCCCCCEEeccCCccChH--H-HHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 33 35888888886554321 1 111222333677888888888888887777776664 57888888887644
Q ss_pred Cc-hhHHH---HHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCC
Q 021667 230 NL-VGKLG---KICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGIS 278 (309)
Q Consensus 230 ~~-~~~l~---~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s 278 (309)
.. ...+. ..++ +|+.+++++|.+++.+.....+..-.....++++|+.
T Consensus 264 ~~~~~~l~~~~~~~~-~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (319)
T cd00116 264 DDGAKDLAEVLAEKE-SLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVK 315 (319)
T ss_pred cHHHHHHHHHHhcCC-CccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccC
Confidence 22 22232 2334 6888888888888776666654331122366666654
No 7
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=4.9e-13 Score=108.50 Aligned_cols=171 Identities=20% Similarity=0.226 Sum_probs=133.4
Q ss_pred CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhc-CCC
Q 021667 84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSL-CPL 161 (309)
Q Consensus 84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~-~~~ 161 (309)
|..++.+.++. .+.|.....+++ -.+|+.|+|+.|..++..++..+.+.|..|.+|+|++|....+.+..+..+ -++
T Consensus 209 C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~ 287 (419)
T KOG2120|consen 209 CSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISET 287 (419)
T ss_pred HHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchh
Confidence 66788888854 677888888887 689999999999999999999999999999999999996555545554444 479
Q ss_pred CcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCC-ccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHH-HHh
Q 021667 162 LRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGN-ELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLG-KIC 239 (309)
Q Consensus 162 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~-~~~ 239 (309)
|+.|+++++.- .-....+..+.+.||+|.+|+|+.| .+++..+..+. ..+.|++|.++.|..+..-..+. ...
T Consensus 288 l~~LNlsG~rr----nl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~~L~~lSlsRCY~i~p~~~~~l~s~ 362 (419)
T KOG2120|consen 288 LTQLNLSGYRR----NLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFNYLQHLSLSRCYDIIPETLLELNSK 362 (419)
T ss_pred hhhhhhhhhHh----hhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hcchheeeehhhhcCCChHHeeeeccC
Confidence 99999987321 1235567788889999999999999 88886565555 78999999999999887633222 334
Q ss_pred HhccCceecCCCCCCchhhhhhh
Q 021667 240 AERIRDLRHPNDSTHDYEFGADF 262 (309)
Q Consensus 240 ~~~L~~L~l~~~~~~d~~~~~~~ 262 (309)
| .|..|++.|+ ++|..+..+.
T Consensus 363 p-sl~yLdv~g~-vsdt~mel~~ 383 (419)
T KOG2120|consen 363 P-SLVYLDVFGC-VSDTTMELLK 383 (419)
T ss_pred c-ceEEEEeccc-cCchHHHHHH
Confidence 5 8999999886 4455555554
No 8
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.28 E-value=8.3e-11 Score=97.60 Aligned_cols=195 Identities=18% Similarity=0.134 Sum_probs=132.6
Q ss_pred CCCceEEeccc-cC---ChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHH------------HHhcCCCcCEEEecCCCC
Q 021667 84 NGQLLSINIEY-FG---TDELLQYIANRSRNLRNLRLVSCYNISDQGFCE------------AIKGFPLLEELELSYCSL 147 (309)
Q Consensus 84 ~~~l~~l~l~~-~~---~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~------------~~~~~~~L~~L~L~~~~~ 147 (309)
+|+++.++++. -+ +-+.+..+...|..|++|.|.+| .++..+=.. .+..-+.|+.+....|.+
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 56899999853 23 33556666667899999999987 444333222 122347888998888866
Q ss_pred CHHH---HHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHH---HhCCCCCee
Q 021667 148 SQEA---LEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAIL---DACPHLESL 221 (309)
Q Consensus 148 ~~~~---~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~---~~~~~L~~L 221 (309)
.+.+ +....+.+|.|+.+.+..+++.... ...+..-..+||+|+.|+|..|.++..+-..+. ..+|+|++|
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG---~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEG---VTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL 246 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCch---hHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence 5444 3444567789999999876665431 122222234999999999999988877655444 457789999
Q ss_pred ecCCCCCcCc-----hhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccCC
Q 021667 222 DLRQCFNVNL-----VGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVS 284 (309)
Q Consensus 222 ~l~~c~~~~~-----~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~ 284 (309)
.+++|..-+. ..++....| +|+.|.+++|.++-.+..+..--. ..-|++..++++++.+..
T Consensus 247 ~l~dcll~~~Ga~a~~~al~~~~p-~L~vl~l~gNeIt~da~~~la~~~-~ek~dL~kLnLngN~l~e 312 (382)
T KOG1909|consen 247 NLGDCLLENEGAIAFVDALKESAP-SLEVLELAGNEITRDAALALAACM-AEKPDLEKLNLNGNRLGE 312 (382)
T ss_pred cccccccccccHHHHHHHHhccCC-CCceeccCcchhHHHHHHHHHHHH-hcchhhHHhcCCcccccc
Confidence 9999987665 234445566 999999999998655444432111 146788899999998843
No 9
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.26 E-value=1.1e-10 Score=96.79 Aligned_cols=232 Identities=20% Similarity=0.178 Sum_probs=151.2
Q ss_pred HHHHHhccCCCCCceeecCCCCCCcccchhHHHHHHHHHhccCCCceEEeccccCCh----HH---HHHHH---hcCCCc
Q 021667 42 SSWLRICHDPAMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSINIEYFGTD----EL---LQYIA---NRSRNL 111 (309)
Q Consensus 42 r~W~~~~~~~~l~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~----~~---l~~l~---~~~~~L 111 (309)
+--......-.-+..+++++.. +-... .+.+...+.. .+.++..+++..++. .. +..++ ..||+|
T Consensus 20 ~~v~~~~~~~~s~~~l~lsgnt---~G~EA-a~~i~~~L~~-~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L 94 (382)
T KOG1909|consen 20 KDVEEELEPMDSLTKLDLSGNT---FGTEA-ARAIAKVLAS-KKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKL 94 (382)
T ss_pred hhHHHHhcccCceEEEeccCCc---hhHHH-HHHHHHHHhh-cccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCce
Confidence 3333444433446778877644 22222 2222223322 337777777653332 22 23332 248899
Q ss_pred cEEEeCCCCCCC---HHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHH------------hcCCCCcEEEeccCCCCCCC
Q 021667 112 RNLRLVSCYNIS---DQGFCEAIKGFPLLEELELSYCSLSQEALEAVG------------SLCPLLRSFKLNNRGHRCPK 176 (309)
Q Consensus 112 ~~L~l~~~~~~~---~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~------------~~~~~L~~L~l~~~~~~~~~ 176 (309)
+.|+|+.+ .++ ..++..++++|..|++|.|.+|.++..+-..++ ..-|+|+.+..+.+.+...
T Consensus 95 ~~ldLSDN-A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~- 172 (382)
T KOG1909|consen 95 QKLDLSDN-AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG- 172 (382)
T ss_pred eEeecccc-ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc-
Confidence 99999954 555 455667888999999999999988765544332 3457899999886555422
Q ss_pred cccchhHHHHHhcCCCCcEEEecCCccChHHHHHH---HHhCCCCCeeecCCCCCcCc----hhHHHHHhHhccCceecC
Q 021667 177 IECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAI---LDACPHLESLDLRQCFNVNL----VGKLGKICAERIRDLRHP 249 (309)
Q Consensus 177 ~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l---~~~~~~L~~L~l~~c~~~~~----~~~l~~~~~~~L~~L~l~ 249 (309)
.-..+....+.+|.|+.+.+..|.|..+++..+ +..||+|+.|+|+++..... .+.....++ +|+.|+++
T Consensus 173 --ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~-~L~El~l~ 249 (382)
T KOG1909|consen 173 --GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP-HLRELNLG 249 (382)
T ss_pred --cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc-hheeeccc
Confidence 122233344578999999999998888777444 34599999999999775554 223334456 99999999
Q ss_pred CCCCCchhhhhhhhhhccCCcCCCCCCCCccccC
Q 021667 250 NDSTHDYEFGADFQDFCWSSVEDYPSGISDIELV 283 (309)
Q Consensus 250 ~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~ 283 (309)
+|.+.+.|..++....-..-|.++.+++.+++.-
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 9999998888876444335678888888777653
No 10
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.26 E-value=1.6e-11 Score=111.96 Aligned_cols=162 Identities=29% Similarity=0.421 Sum_probs=127.5
Q ss_pred cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCC--CCC--HHHHHHHHhcCCCCcEEEeccC
Q 021667 95 FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYC--SLS--QEALEAVGSLCPLLRSFKLNNR 170 (309)
Q Consensus 95 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~--~~~--~~~~~~l~~~~~~L~~L~l~~~ 170 (309)
......+..+...+++|+.|.+.+|..+++.++..+...+++|++|+++++ .+. ......+...|++|+.|++..+
T Consensus 174 ~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~ 253 (482)
T KOG1947|consen 174 LLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGC 253 (482)
T ss_pred cccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhh
Confidence 345555666776789999999999999999888889999999999999873 222 2234457788899999999864
Q ss_pred CCCCCCcccchhHHHHHhcCCCCcEEEecCCc-cChHHHHHHHHhCCCCCeeecCCCCCcCc--hhHHHHHhHhccCcee
Q 021667 171 GHRCPKIECDDDAKAIAENMHGLRHLQLFGNE-LTNVGLQAILDACPHLESLDLRQCFNVNL--VGKLGKICAERIRDLR 247 (309)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~l~~l~~~~~~L~~L~l~~c~~~~~--~~~l~~~~~~~L~~L~ 247 (309)
.. ..+..+.+++..|++|++|.+.+|. +++.++..++..|++|++|++++|..+++ ...+...|+ +++.|.
T Consensus 254 ~~-----isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~-~l~~l~ 327 (482)
T KOG1947|consen 254 GL-----VTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCP-NLRELK 327 (482)
T ss_pred hc-----cCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCc-chhhhh
Confidence 42 3488889999889999999988884 89999999999999999999999999877 446677788 888776
Q ss_pred cCCCC----CCchhhhhhh
Q 021667 248 HPNDS----THDYEFGADF 262 (309)
Q Consensus 248 l~~~~----~~d~~~~~~~ 262 (309)
+.+.. +++.++....
T Consensus 328 ~~~~~~c~~l~~~~l~~~~ 346 (482)
T KOG1947|consen 328 LLSLNGCPSLTDLSLSGLL 346 (482)
T ss_pred hhhcCCCccHHHHHHHHhh
Confidence 65543 5655554443
No 11
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.22 E-value=7.2e-11 Score=107.71 Aligned_cols=180 Identities=24% Similarity=0.356 Sum_probs=135.8
Q ss_pred HHHHHhcCCCccEEEeCCCC-CCCHHHHHHHHhcCCCcCEEEecCC-CCCHHHHHHHHhcCCCCcEEEeccC-CCCCCCc
Q 021667 101 LQYIANRSRNLRNLRLVSCY-NISDQGFCEAIKGFPLLEELELSYC-SLSQEALEAVGSLCPLLRSFKLNNR-GHRCPKI 177 (309)
Q Consensus 101 l~~l~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~ 177 (309)
+..+...+..++.+.+..+. .........+...++.|++|.+..+ .+.+..+..++..+++|+.|.++++ ....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--- 229 (482)
T KOG1947|consen 153 LLELSRGLANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLIT--- 229 (482)
T ss_pred hHHHHHHHHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccc---
Confidence 34444445567777766554 3445566677777999999999999 8888888899999999999999863 2111
Q ss_pred ccchhHHHHHhcCCCCcEEEecCCc-cChHHHHHHHHhCCCCCeeecCCCCCcCc--hhHHHHHhHhccCceecCCCC-C
Q 021667 178 ECDDDAKAIAENMHGLRHLQLFGNE-LTNVGLQAILDACPHLESLDLRQCFNVNL--VGKLGKICAERIRDLRHPNDS-T 253 (309)
Q Consensus 178 ~~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~l~~l~~~~~~L~~L~l~~c~~~~~--~~~l~~~~~~~L~~L~l~~~~-~ 253 (309)
........+...+++|+.|++.++. ++|.++..++..|++|+.|.+.+|..+++ +..+...|+ +|++|++++|. +
T Consensus 230 ~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~-~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 230 LSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCP-SLRELDLSGCHGL 308 (482)
T ss_pred cchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcC-cccEEeeecCccc
Confidence 1122334467788999999999995 99999999999999999999999998776 668888999 99999999998 7
Q ss_pred CchhhhhhhhhhccCCcCCCCCCCCccccCCC
Q 021667 254 HDYEFGADFQDFCWSSVEDYPSGISDIELVSD 285 (309)
Q Consensus 254 ~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~d 285 (309)
+|.++.... ..|+....+.-.....|..+++
T Consensus 309 ~d~~l~~~~-~~c~~l~~l~~~~~~~c~~l~~ 339 (482)
T KOG1947|consen 309 TDSGLEALL-KNCPNLRELKLLSLNGCPSLTD 339 (482)
T ss_pred hHHHHHHHH-HhCcchhhhhhhhcCCCccHHH
Confidence 899998886 5676644444333433444433
No 12
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=5.6e-10 Score=95.34 Aligned_cols=141 Identities=22% Similarity=0.236 Sum_probs=107.4
Q ss_pred CCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCC-CHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHH
Q 021667 108 SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSL-SQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAI 186 (309)
Q Consensus 108 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l 186 (309)
..+|+.+.|.++ .+.+.+....++.||+++.|+|+.|-+ ....+..++..+|+|+.|+++.+.+..+ . ++. .
T Consensus 120 ~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~--~-~s~---~ 192 (505)
T KOG3207|consen 120 LKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNF--I-SSN---T 192 (505)
T ss_pred HHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCC--c-ccc---c
Confidence 678888889866 666666667888899999999999933 4566888999999999999998666543 1 111 1
Q ss_pred HhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCch
Q 021667 187 AENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDY 256 (309)
Q Consensus 187 ~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~ 256 (309)
...+++|+.|.|++|.++.+.+..++..+|.|+.|.+.++..+.....-..... .|++|+|++|++-|.
T Consensus 193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~-~L~~LdLs~N~li~~ 261 (505)
T KOG3207|consen 193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQ-TLQELDLSNNNLIDF 261 (505)
T ss_pred hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhh-HHhhccccCCccccc
Confidence 116789999999999999999999999999999999998864443222223334 799999999985433
No 13
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.94 E-value=2.3e-09 Score=106.17 Aligned_cols=87 Identities=17% Similarity=0.002 Sum_probs=41.7
Q ss_pred cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccC
Q 021667 189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWS 268 (309)
Q Consensus 189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~ 268 (309)
.+++|++|++.+|.++...... +..+++|++|++++|............++ +|+.|++++|.+++..-..+. .
T Consensus 210 ~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~-----~ 282 (968)
T PLN00113 210 QMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTGPIPSSLGNLK-NLQYLFLYQNKLSGPIPPSIF-----S 282 (968)
T ss_pred CcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceeccccChhHhCCC-CCCEEECcCCeeeccCchhHh-----h
Confidence 4455555555555443222222 23455566666665544333333334445 666666666665433222222 3
Q ss_pred CcCCCCCCCCcccc
Q 021667 269 SVEDYPSGISDIEL 282 (309)
Q Consensus 269 ~~~l~~~~~s~~~~ 282 (309)
...+..++++++..
T Consensus 283 l~~L~~L~Ls~n~l 296 (968)
T PLN00113 283 LQKLISLDLSDNSL 296 (968)
T ss_pred ccCcCEEECcCCee
Confidence 34556666665543
No 14
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.88 E-value=4.2e-09 Score=104.30 Aligned_cols=180 Identities=17% Similarity=0.027 Sum_probs=99.4
Q ss_pred CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667 84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL 162 (309)
Q Consensus 84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L 162 (309)
.+.|+.|+++. .++...-..+...+++|++|+++++ .++.. +. ...+++|++|+|++|.+....... ...+++|
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n-~l~~~-~p--~~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L 166 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN-NFTGS-IP--RGSIPNLETLDLSNNMLSGEIPND-IGSFSSL 166 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC-ccccc-cC--ccccCCCCEEECcCCcccccCChH-HhcCCCC
Confidence 45566666643 2222222333434666666666644 22211 00 123567777777776554322222 2346777
Q ss_pred cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhc
Q 021667 163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAER 242 (309)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~ 242 (309)
+.|+++++.+.. .....+. ++++|++|++++|.++..... -+..+++|+.|++++|............++ +
T Consensus 167 ~~L~L~~n~l~~------~~p~~~~-~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~ 237 (968)
T PLN00113 167 KVLDLGGNVLVG------KIPNSLT-NLTSLEFLTLASNQLVGQIPR-ELGQMKSLKWIYLGYNNLSGEIPYEIGGLT-S 237 (968)
T ss_pred CEEECccCcccc------cCChhhh-hCcCCCeeeccCCCCcCcCCh-HHcCcCCccEEECcCCccCCcCChhHhcCC-C
Confidence 777777644321 1112333 677788888887765533222 233577788888887765544444445566 8
Q ss_pred cCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667 243 IRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL 282 (309)
Q Consensus 243 L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~ 282 (309)
|++|++++|.++...-..+. ....++.++++.+..
T Consensus 238 L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l 272 (968)
T PLN00113 238 LNHLDLVYNNLTGPIPSSLG-----NLKNLQYLFLYQNKL 272 (968)
T ss_pred CCEEECcCceeccccChhHh-----CCCCCCEEECcCCee
Confidence 88888888877654333443 445677777776654
No 15
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.87 E-value=1.8e-09 Score=62.82 Aligned_cols=40 Identities=28% Similarity=0.596 Sum_probs=37.1
Q ss_pred CcHHHHHHHhccCChhhhhhhhhhhcHHHHHhccCCCCCce
Q 021667 16 LPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRN 56 (309)
Q Consensus 16 LP~eiL~~If~~L~~~d~~~~~~~Vcr~W~~~~~~~~l~~~ 56 (309)
||+|++..||.+++..|+. +++.|||+|+.++..+.+|+.
T Consensus 1 lP~~ll~~I~~~l~~~d~~-~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLL-RLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHhcChhhhhc
Confidence 7999999999999999995 999999999999998888864
No 16
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.86 E-value=2.8e-10 Score=68.83 Aligned_cols=44 Identities=25% Similarity=0.604 Sum_probs=36.0
Q ss_pred CCCCCcHHHHHHHhccCChhhhhhhhhhhcHHHHHhccCCCCCce
Q 021667 12 DWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRN 56 (309)
Q Consensus 12 ~~~~LP~eiL~~If~~L~~~d~~~~~~~Vcr~W~~~~~~~~l~~~ 56 (309)
.|.+||+|++.+||++|+..+++ ++++|||+|++++.++..|.+
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~-~l~~vsk~~~~~~~~~~~~~~ 45 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLL-RLSLVSKRWRSLVDSPRLWKK 45 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHH-HHCTT-HHHHHHHTTHHHHHH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHH-HHHHHhhHHHHHHcCCCccHH
Confidence 46789999999999999999996 999999999999987666543
No 17
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=2.1e-09 Score=91.94 Aligned_cols=142 Identities=20% Similarity=0.130 Sum_probs=62.2
Q ss_pred HHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchh
Q 021667 103 YIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDD 182 (309)
Q Consensus 103 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 182 (309)
..++.|++++.|+|+..--..-..+..+++.+|+|+.|+|+.|.+....-.......+.|+.|.++.|++. ...
T Consensus 140 ~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls------~k~ 213 (505)
T KOG3207|consen 140 EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLS------WKD 213 (505)
T ss_pred hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCC------HHH
Confidence 34444666666666543222234455555556666666666552211000011113445566666555543 233
Q ss_pred HHHHHhcCCCCcEEEecCC-ccChHHHHHHHHhCCCCCeeecCCCCCcCc-hhHHHHHhHhccCceecCCCCC
Q 021667 183 AKAIAENMHGLRHLQLFGN-ELTNVGLQAILDACPHLESLDLRQCFNVNL-VGKLGKICAERIRDLRHPNDST 253 (309)
Q Consensus 183 ~~~l~~~~~~L~~L~l~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~-~~~l~~~~~~~L~~L~l~~~~~ 253 (309)
+..+...+|+|+.|.+.+| .+....... +....|++|+|++++.++- .......+| .|+.|+++.+.+
T Consensus 214 V~~~~~~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N~li~~~~~~~~~~l~-~L~~Lnls~tgi 283 (505)
T KOG3207|consen 214 VQWILLTFPSLEVLYLEANEIILIKATST--KILQTLQELDLSNNNLIDFDQGYKVGTLP-GLNQLNLSSTGI 283 (505)
T ss_pred HHHHHHhCCcHHHhhhhcccccceecchh--hhhhHHhhccccCCccccccccccccccc-chhhhhccccCc
Confidence 3344445566665555555 222111110 0122355555555544442 123333344 455555544444
No 18
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.69 E-value=3.1e-08 Score=92.86 Aligned_cols=144 Identities=17% Similarity=0.191 Sum_probs=103.7
Q ss_pred CCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHH
Q 021667 108 SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIA 187 (309)
Q Consensus 108 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 187 (309)
-.+|++|++++...+...-...+...+|.|++|.+.+..+....+..++.++|+|..|++++.... .+..+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~--------nl~GIS 192 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS--------NLSGIS 192 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc--------CcHHHh
Confidence 468899999876566555556677778999999998887766668888888999999999863332 234555
Q ss_pred hcCCCCcEEEecCCccCh-HHHHHHHHhCCCCCeeecCCCCCcCchh------HHHHHhHhccCceecCCCCCCchhhhh
Q 021667 188 ENMHGLRHLQLFGNELTN-VGLQAILDACPHLESLDLRQCFNVNLVG------KLGKICAERIRDLRHPNDSTHDYEFGA 260 (309)
Q Consensus 188 ~~~~~L~~L~l~~~~i~~-~~l~~l~~~~~~L~~L~l~~c~~~~~~~------~l~~~~~~~L~~L~l~~~~~~d~~~~~ 260 (309)
++++|+.|.+.+-.+.. ..+..++ .+.+|+.||+|.-....... +....+| +||.|+.+|..+++.-+..
T Consensus 193 -~LknLq~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lp-eLrfLDcSgTdi~~~~le~ 269 (699)
T KOG3665|consen 193 -RLKNLQVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLP-ELRFLDCSGTDINEEILEE 269 (699)
T ss_pred -ccccHHHHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCc-cccEEecCCcchhHHHHHH
Confidence 88888888888875554 5666776 68889999998765555421 1223356 8888888888877776666
Q ss_pred hh
Q 021667 261 DF 262 (309)
Q Consensus 261 ~~ 262 (309)
+.
T Consensus 270 ll 271 (699)
T KOG3665|consen 270 LL 271 (699)
T ss_pred HH
Confidence 54
No 19
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.69 E-value=5.8e-09 Score=80.83 Aligned_cols=105 Identities=20% Similarity=0.274 Sum_probs=23.6
Q ss_pred CcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhC
Q 021667 136 LLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDAC 215 (309)
Q Consensus 136 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~ 215 (309)
++++|+|.++.|+. ++.+...+.+|+.|+++++.+.. +..+. .+++|++|.+++|.|+.-+ ..+...+
T Consensus 20 ~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~--------l~~l~-~L~~L~~L~L~~N~I~~i~-~~l~~~l 87 (175)
T PF14580_consen 20 KLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQITK--------LEGLP-GLPRLKTLDLSNNRISSIS-EGLDKNL 87 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----------TT-----TT--EEE--SS---S-C-HHHHHH-
T ss_pred cccccccccccccc--ccchhhhhcCCCEEECCCCCCcc--------ccCcc-ChhhhhhcccCCCCCCccc-cchHHhC
Confidence 44555555554432 23333334455555555433321 11111 3455555555555554321 1122245
Q ss_pred CCCCeeecCCCCCcC--chhHHHHHhHhccCceecCCCCCC
Q 021667 216 PHLESLDLRQCFNVN--LVGKLGKICAERIRDLRHPNDSTH 254 (309)
Q Consensus 216 ~~L~~L~l~~c~~~~--~~~~l~~~~~~~L~~L~l~~~~~~ 254 (309)
|+|++|.++++.... +...+ ..++ +|+.|.+.||+++
T Consensus 88 p~L~~L~L~~N~I~~l~~l~~L-~~l~-~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNELEPL-SSLP-KLRVLSLEGNPVC 126 (175)
T ss_dssp TT--EEE-TTS---SCCCCGGG-GG-T-T--EEE-TT-GGG
T ss_pred CcCCEEECcCCcCCChHHhHHH-HcCC-CcceeeccCCccc
Confidence 556666555443211 12122 2345 5666666666653
No 20
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.61 E-value=4e-09 Score=93.49 Aligned_cols=160 Identities=18% Similarity=0.169 Sum_probs=92.5
Q ss_pred CCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHH
Q 021667 108 SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIA 187 (309)
Q Consensus 108 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 187 (309)
+.++++|+|... +++.-.-.+ .-++..|+.|+|+.|.|..-....+ .+|++|+.|+++++.++.- +++ .+.
T Consensus 268 l~kme~l~L~~N-~l~~vn~g~-lfgLt~L~~L~lS~NaI~rih~d~W-sftqkL~~LdLs~N~i~~l----~~~--sf~ 338 (873)
T KOG4194|consen 268 LEKMEHLNLETN-RLQAVNEGW-LFGLTSLEQLDLSYNAIQRIHIDSW-SFTQKLKELDLSSNRITRL----DEG--SFR 338 (873)
T ss_pred ecccceeecccc-hhhhhhccc-ccccchhhhhccchhhhheeecchh-hhcccceeEeccccccccC----Chh--HHH
Confidence 556666666532 332211111 2246677777777774432222222 3478888888887554421 221 222
Q ss_pred hcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCC---cCchhHHHHHhHhccCceecCCCCCCchhhhhhhhh
Q 021667 188 ENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFN---VNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQD 264 (309)
Q Consensus 188 ~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~---~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~ 264 (309)
.+..|++|+|+.|.++.-.-.. +.++.+|+.|+|+.+.. ++|.+......+ .|++|++.||++....-.+|.
T Consensus 339 -~L~~Le~LnLs~Nsi~~l~e~a-f~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~-~LrkL~l~gNqlk~I~krAfs-- 413 (873)
T KOG4194|consen 339 -VLSQLEELNLSHNSIDHLAEGA-FVGLSSLHKLDLRSNELSWCIEDAAVAFNGLP-SLRKLRLTGNQLKSIPKRAFS-- 413 (873)
T ss_pred -HHHHhhhhcccccchHHHHhhH-HHHhhhhhhhcCcCCeEEEEEecchhhhccch-hhhheeecCceeeecchhhhc--
Confidence 4556778888887666432222 22567788888877643 334444555567 888888888887666666665
Q ss_pred hccCCcCCCCCCCCccccCC
Q 021667 265 FCWSSVEDYPSGISDIELVS 284 (309)
Q Consensus 265 ~c~~~~~l~~~~~s~~~~~~ 284 (309)
+.+.||++|+.+-...|
T Consensus 414 ---gl~~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 414 ---GLEALEHLDLGDNAIAS 430 (873)
T ss_pred ---cCcccceecCCCCccee
Confidence 66677777776555443
No 21
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.55 E-value=4e-08 Score=76.19 Aligned_cols=138 Identities=22% Similarity=0.243 Sum_probs=51.8
Q ss_pred HHHHHHHhc--CCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCC
Q 021667 99 ELLQYIANR--SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPK 176 (309)
Q Consensus 99 ~~l~~l~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 176 (309)
..++.+.+. +.+++.|+|.++ .++. +..+...+.+|+.|+|++|.+.. +..+ ..+++|+.|.++++.+...
T Consensus 7 ~~i~~~~~~~n~~~~~~L~L~~n-~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~--l~~l-~~L~~L~~L~L~~N~I~~i- 79 (175)
T PF14580_consen 7 NMIEQIAQYNNPVKLRELNLRGN-QIST--IENLGATLDKLEVLDLSNNQITK--LEGL-PGLPRLKTLDLSNNRISSI- 79 (175)
T ss_dssp --------------------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS---S--
T ss_pred ccccccccccccccccccccccc-cccc--ccchhhhhcCCCEEECCCCCCcc--ccCc-cChhhhhhcccCCCCCCcc-
Confidence 344444332 557899999965 4443 23344457899999999997764 3332 3478999999997554311
Q ss_pred cccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCc---hhHHHHHhHhccCceecCC
Q 021667 177 IECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNL---VGKLGKICAERIRDLRHPN 250 (309)
Q Consensus 177 ~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~---~~~l~~~~~~~L~~L~l~~ 250 (309)
. ..+...+|+|++|.+++|.|.+-.-..-+..+|+|+.|++.+++.... ...+...+| +|+.|+-..
T Consensus 80 ---~---~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP-~Lk~LD~~~ 149 (175)
T PF14580_consen 80 ---S---EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLP-SLKVLDGQD 149 (175)
T ss_dssp ---C---HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-T-T-SEETTEE
T ss_pred ---c---cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcC-hhheeCCEE
Confidence 1 234347899999999999887533223344799999999999886654 336667788 999887644
No 22
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.45 E-value=7.3e-07 Score=83.77 Aligned_cols=166 Identities=17% Similarity=0.220 Sum_probs=111.2
Q ss_pred HHHHHHHHHh-ccCCCceEEeccc--cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCC
Q 021667 72 LEKMCRHAVD-RSNGQLLSINIEY--FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLS 148 (309)
Q Consensus 72 ~~~~~~~~~~-~~~~~l~~l~l~~--~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 148 (309)
+..+++..+. .+..+|++|++.. .+...-...++..+|.|++|.+.+. .+....+..+...+|+|..||+++++++
T Consensus 108 i~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~TnI~ 186 (699)
T KOG3665|consen 108 IISLLKDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTNIS 186 (699)
T ss_pred HHHHHHHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCCCcc
Confidence 3445544443 3456889999854 3444445778888999999999965 5555558889999999999999999887
Q ss_pred HHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCC-ccChH-HHHHHHH---hCCCCCeeec
Q 021667 149 QEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGN-ELTNV-GLQAILD---ACPHLESLDL 223 (309)
Q Consensus 149 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~i~~~-~l~~l~~---~~~~L~~L~l 223 (309)
+- ..+ .++++|+.|.+.+..+. ....+..+. ++++|+.|+++.. ...+. .+...++ .+|+|+.||.
T Consensus 187 nl--~GI-S~LknLq~L~mrnLe~e-----~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDc 257 (699)
T KOG3665|consen 187 NL--SGI-SRLKNLQVLSMRNLEFE-----SYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDC 257 (699)
T ss_pred Cc--HHH-hccccHHHHhccCCCCC-----chhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEec
Confidence 63 333 44889999988864443 245566777 8999999999987 33332 3333332 2788999988
Q ss_pred CCCCCcCc-hhHHHHHhHhccCceec
Q 021667 224 RQCFNVNL-VGKLGKICAERIRDLRH 248 (309)
Q Consensus 224 ~~c~~~~~-~~~l~~~~~~~L~~L~l 248 (309)
++.....+ .+.+...-| +|+.+..
T Consensus 258 SgTdi~~~~le~ll~sH~-~L~~i~~ 282 (699)
T KOG3665|consen 258 SGTDINEEILEELLNSHP-NLQQIAA 282 (699)
T ss_pred CCcchhHHHHHHHHHhCc-cHhhhhh
Confidence 86443333 333433333 5554443
No 23
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.43 E-value=8.3e-06 Score=66.30 Aligned_cols=94 Identities=26% Similarity=0.182 Sum_probs=41.6
Q ss_pred CCcCEEEecCCCC---CHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHH
Q 021667 135 PLLEELELSYCSL---SQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAI 211 (309)
Q Consensus 135 ~~L~~L~L~~~~~---~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l 211 (309)
|.|+......|.+ +........++-.+|+.+.+..+++....+ ...+..-...+++|+.|+|..|.++..+-..+
T Consensus 157 p~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv--~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L 234 (388)
T COG5238 157 PKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGV--TMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL 234 (388)
T ss_pred CCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchh--HHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence 5555555555522 222222222222455666555444432211 11111112256666666666665554443322
Q ss_pred H---HhCCCCCeeecCCCCCcC
Q 021667 212 L---DACPHLESLDLRQCFNVN 230 (309)
Q Consensus 212 ~---~~~~~L~~L~l~~c~~~~ 230 (309)
. ..++.|++|.+.+|-..+
T Consensus 235 a~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 235 ADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred HHHhcccchhhhccccchhhcc
Confidence 2 234456666666665444
No 24
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.30 E-value=1.1e-05 Score=65.51 Aligned_cols=197 Identities=17% Similarity=0.130 Sum_probs=122.5
Q ss_pred CceeecCCCCCCcccchhHHHHHHHHHhccCCCceEEecccc----CChHH---HH---HHHhcCCCccEEEeCCCCCCC
Q 021667 54 WRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSINIEYF----GTDEL---LQ---YIANRSRNLRNLRLVSCYNIS 123 (309)
Q Consensus 54 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~----~~~~~---l~---~l~~~~~~L~~L~l~~~~~~~ 123 (309)
...+++++.. ........++..... ..+++..+++.. ..+.. +. ...-.||+|+.++|+.. .++
T Consensus 32 ~~evdLSGNt---igtEA~e~l~~~ia~--~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN-Afg 105 (388)
T COG5238 32 LVEVDLSGNT---IGTEAMEELCNVIAN--VRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN-AFG 105 (388)
T ss_pred eeEEeccCCc---ccHHHHHHHHHHHhh--hcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc-ccC
Confidence 3567777654 444455555554433 456666666542 22222 11 22224999999999854 333
Q ss_pred ---HHHHHHHHhcCCCcCEEEecCCCCCHHHHH-------HH-----HhcCCCCcEEEeccCCCCCCCcccchhHHHHHh
Q 021667 124 ---DQGFCEAIKGFPLLEELELSYCSLSQEALE-------AV-----GSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAE 188 (309)
Q Consensus 124 ---~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-------~l-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 188 (309)
.+.+..++.+...|++|.|++|++....-. .+ +..-|.|++...+.+.+... ......+..+
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRleng---s~~~~a~~l~ 182 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENG---SKELSAALLE 182 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccC---cHHHHHHHHH
Confidence 445666777889999999999955432111 11 23458899998876555422 1222333443
Q ss_pred cCCCCcEEEecCCccChHHHHHHH----HhCCCCCeeecCCCCCcCch-hHHH---HHhHhccCceecCCCCCCchhhhh
Q 021667 189 NMHGLRHLQLFGNELTNVGLQAIL----DACPHLESLDLRQCFNVNLV-GKLG---KICAERIRDLRHPNDSTHDYEFGA 260 (309)
Q Consensus 189 ~~~~L~~L~l~~~~i~~~~l~~l~----~~~~~L~~L~l~~c~~~~~~-~~l~---~~~~~~L~~L~l~~~~~~d~~~~~ 260 (309)
.-.+|+.+.+..|.|..+|+..++ ..|++|+.|+|.++...... ..++ ..++ .|+.|++..|-++..|...
T Consensus 183 sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~-~lrEL~lnDClls~~G~~~ 261 (388)
T COG5238 183 SHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN-LLRELRLNDCLLSNEGVKS 261 (388)
T ss_pred hhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc-hhhhccccchhhccccHHH
Confidence 457999999999999988876654 24889999999987654431 1222 2345 7899999999876665544
No 25
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.29 E-value=7.6e-07 Score=79.40 Aligned_cols=162 Identities=16% Similarity=0.079 Sum_probs=87.7
Q ss_pred CCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCc
Q 021667 85 GQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLR 163 (309)
Q Consensus 85 ~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~ 163 (309)
+..+.|++++ .+.+..... ...+++|+.+++... .++ .++.+.....+|++|+|.+|.|+...-+.+. ..|.|+
T Consensus 78 ~~t~~LdlsnNkl~~id~~~-f~nl~nLq~v~l~~N-~Lt--~IP~f~~~sghl~~L~L~~N~I~sv~se~L~-~l~alr 152 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEF-FYNLPNLQEVNLNKN-ELT--RIPRFGHESGHLEKLDLRHNLISSVTSEELS-ALPALR 152 (873)
T ss_pred cceeeeeccccccccCcHHH-HhcCCcceeeeeccc-hhh--hcccccccccceeEEeeeccccccccHHHHH-hHhhhh
Confidence 3455677654 233323222 234788888888743 332 2333344446788888888755544333332 356677
Q ss_pred EEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhcc
Q 021667 164 SFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERI 243 (309)
Q Consensus 164 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L 243 (309)
+|+++.+.+..... .-.+.-+++++|+|++|.|++-+...+. +..+|..|.|+.+...+-....+.+.+ +|
T Consensus 153 slDLSrN~is~i~~-------~sfp~~~ni~~L~La~N~It~l~~~~F~-~lnsL~tlkLsrNrittLp~r~Fk~L~-~L 223 (873)
T KOG4194|consen 153 SLDLSRNLISEIPK-------PSFPAKVNIKKLNLASNRITTLETGHFD-SLNSLLTLKLSRNRITTLPQRSFKRLP-KL 223 (873)
T ss_pred hhhhhhchhhcccC-------CCCCCCCCceEEeecccccccccccccc-ccchheeeecccCcccccCHHHhhhcc-hh
Confidence 77776533221100 0011334677777777777765555443 344666677766655554444455566 77
Q ss_pred CceecCCCCCCchhhhh
Q 021667 244 RDLRHPNDSTHDYEFGA 260 (309)
Q Consensus 244 ~~L~l~~~~~~d~~~~~ 260 (309)
+.|+|..|.+.-.....
T Consensus 224 ~~LdLnrN~irive~lt 240 (873)
T KOG4194|consen 224 ESLDLNRNRIRIVEGLT 240 (873)
T ss_pred hhhhccccceeeehhhh
Confidence 77777777654443333
No 26
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=5.1e-06 Score=68.33 Aligned_cols=109 Identities=20% Similarity=0.188 Sum_probs=71.2
Q ss_pred ccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCC-HHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhc
Q 021667 111 LRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLS-QEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAEN 189 (309)
Q Consensus 111 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~ 189 (309)
++-|.+.++.--+...+..+...+..+++|+|.+|.++ .+.+..+..++|.|+.|+++.+.+... +..+...
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-------I~~lp~p 119 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-------IKSLPLP 119 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-------cccCccc
Confidence 33445555533334445566667788888888888665 345667778888888888875443211 1111114
Q ss_pred CCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCC
Q 021667 190 MHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQC 226 (309)
Q Consensus 190 ~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c 226 (309)
..+|+.|-|.|..++......++...|.+++|+++.+
T Consensus 120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 4578888888887777777777777888888877765
No 27
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=1.2e-05 Score=62.41 Aligned_cols=94 Identities=23% Similarity=0.207 Sum_probs=62.8
Q ss_pred CcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCC-ccChHHHHHHHHh
Q 021667 136 LLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGN-ELTNVGLQAILDA 214 (309)
Q Consensus 136 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~i~~~~l~~l~~~ 214 (309)
.++.++-+++.|..+++..+.. ++.++.|.+.+|.. ..|..+..+..-.++|+.|+|++| .||+.|+..+. .
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~-l~~i~~l~l~~ck~-----~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~ 174 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRD-LRSIKSLSLANCKY-----FDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-K 174 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhc-cchhhhheeccccc-----hhhHHHHHhcccccchheeeccCCCeechhHHHHHH-H
Confidence 3456666666777777776543 67777777765432 236666666666778888888887 78888877765 5
Q ss_pred CCCCCeeecCCCCCcCchhHHH
Q 021667 215 CPHLESLDLRQCFNVNLVGKLG 236 (309)
Q Consensus 215 ~~~L~~L~l~~c~~~~~~~~l~ 236 (309)
.++|+.|.+.+-+.+...+...
T Consensus 175 lknLr~L~l~~l~~v~~~e~~~ 196 (221)
T KOG3864|consen 175 LKNLRRLHLYDLPYVANLELVQ 196 (221)
T ss_pred hhhhHHHHhcCchhhhchHHHH
Confidence 7778888777766665544333
No 28
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.92 E-value=4.6e-06 Score=78.20 Aligned_cols=144 Identities=22% Similarity=0.217 Sum_probs=90.8
Q ss_pred cCChHHHHHHHhcCCCccEEEeCCC--CCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCC
Q 021667 95 FGTDELLQYIANRSRNLRNLRLVSC--YNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGH 172 (309)
Q Consensus 95 ~~~~~~l~~l~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 172 (309)
.++|..+..+- +.++||.|+|++. ..+.+. ...+++.|++|.|++|.++.-. .-...|+.|++|...++.+
T Consensus 370 ~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpas----~~~kle~LeeL~LSGNkL~~Lp--~tva~~~~L~tL~ahsN~l 442 (1081)
T KOG0618|consen 370 HLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPAS----KLRKLEELEELNLSGNKLTTLP--DTVANLGRLHTLRAHSNQL 442 (1081)
T ss_pred cccccchhhhc-cccceeeeeecccccccCCHH----HHhchHHhHHHhcccchhhhhh--HHHHhhhhhHHHhhcCCce
Confidence 45666555554 4788888888855 222332 2346788888888888554322 2223477788887765322
Q ss_pred CCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCC
Q 021667 173 RCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDS 252 (309)
Q Consensus 173 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~ 252 (309)
. .+..++ .++.|+.++++.|.++.-.+.... ..|+|++|+++|+....-.......+. ++...++.-++
T Consensus 443 ~--------~fPe~~-~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~~l~~d~~~l~~l~-~l~~~~i~~~~ 511 (1081)
T KOG0618|consen 443 L--------SFPELA-QLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNTRLVFDHKTLKVLK-SLSQMDITLNN 511 (1081)
T ss_pred e--------echhhh-hcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCcccccchhhhHHhh-hhhheecccCC
Confidence 1 223555 788999999999988876665544 237899999999875443334445555 66666666664
Q ss_pred CCch
Q 021667 253 THDY 256 (309)
Q Consensus 253 ~~d~ 256 (309)
.+|.
T Consensus 512 ~~d~ 515 (1081)
T KOG0618|consen 512 TPDG 515 (1081)
T ss_pred CCcc
Confidence 4433
No 29
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.91 E-value=1.2e-05 Score=80.95 Aligned_cols=36 Identities=17% Similarity=0.049 Sum_probs=16.9
Q ss_pred CCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCC
Q 021667 216 PHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDS 252 (309)
Q Consensus 216 ~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~ 252 (309)
++|+.|++++|........-...++ +|+.|+|++|.
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~-~L~~L~Ls~C~ 813 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLH-KLEHLEIENCI 813 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCC-CCCEEECCCCC
Confidence 3455555555544443332333444 55555555543
No 30
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=5.9e-05 Score=58.75 Aligned_cols=73 Identities=23% Similarity=0.275 Sum_probs=54.5
Q ss_pred cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCC-CCCHHHHHHHHhcCCCCcEEEecc
Q 021667 95 FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYC-SLSQEALEAVGSLCPLLRSFKLNN 169 (309)
Q Consensus 95 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~l~~ 169 (309)
.+...++..+. .++.++.|.+.+|..+.+.++..+....++|+.|+|++| .|++.++..+.+ +++|+.|.+.+
T Consensus 112 ~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknLr~L~l~~ 185 (221)
T KOG3864|consen 112 SIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNLRRLHLYD 185 (221)
T ss_pred hHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhhHHHHhcC
Confidence 44555566655 377888888888888888888877777788888888888 788887777655 67788887764
No 31
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.69 E-value=3.1e-05 Score=78.09 Aligned_cols=59 Identities=14% Similarity=0.191 Sum_probs=38.2
Q ss_pred CCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCC
Q 021667 191 HGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDS 252 (309)
Q Consensus 191 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~ 252 (309)
++|+.|+|.++.++. +..-+..+++|+.|++++|+.++.+......++ +|+.|.+++|.
T Consensus 846 ~nL~~L~Ls~n~i~~--iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~-~L~~L~l~~C~ 904 (1153)
T PLN03210 846 TNISDLNLSRTGIEE--VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLK-HLETVDFSDCG 904 (1153)
T ss_pred cccCEeECCCCCCcc--ChHHHhcCCCCCEEECCCCCCcCccCccccccc-CCCeeecCCCc
Confidence 567777777775552 222234677888888888877776444444555 77777777775
No 32
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=97.68 E-value=1.6e-05 Score=65.67 Aligned_cols=48 Identities=21% Similarity=0.394 Sum_probs=40.9
Q ss_pred CCCCCCCcHHHHHHHhcc-----CChhhhhhhhhhhcHHHHHhccCCCCCceee
Q 021667 10 SCDWTQLPADVTSTILSK-----IGAIDVLTSAQRVCSSWLRICHDPAMWRNID 58 (309)
Q Consensus 10 ~~~~~~LP~eiL~~If~~-----L~~~d~~~~~~~Vcr~W~~~~~~~~l~~~i~ 58 (309)
...|+.||+|||..||.. ++.+++- ++|.|||.|+..+++|.+|+..-
T Consensus 104 ~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~-~~s~vCr~F~~~~R~~~lwR~aC 156 (366)
T KOG2997|consen 104 LISISVLPDEVLMRIFRWVVSSLLDLRSLE-QLSLVCRGFYKCARDPELWRLAC 156 (366)
T ss_pred hhhhhhCCHHHHHHHHHHHHhhhcchhhHH-HhHhhHHHHHHHHcChHHHHHHH
Confidence 345789999999999975 5678884 99999999999999999998543
No 33
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=3.2e-05 Score=63.77 Aligned_cols=169 Identities=14% Similarity=0.139 Sum_probs=83.9
Q ss_pred CCCceEEecc-ccCCh-HHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCC
Q 021667 84 NGQLLSINIE-YFGTD-ELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPL 161 (309)
Q Consensus 84 ~~~l~~l~l~-~~~~~-~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 161 (309)
+.+++++++. +.+++ +.+..|.+++|.|+.|+|+ |+.+... +..+-....+|+.|-|.+..++...........|.
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls-~N~L~s~-I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLS-CNSLSSD-IKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeecc-CCcCCCc-cccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 4455566663 23333 4556666677777777776 3333211 11111123466777777766666666666666677
Q ss_pred CcEEEeccCCCCCCCc----------------------ccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCC
Q 021667 162 LRSFKLNNRGHRCPKI----------------------ECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLE 219 (309)
Q Consensus 162 L~~L~l~~~~~~~~~~----------------------~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~ 219 (309)
++.|+++.+.+..-.+ ........+.+.+||+..+.+..|.+.+..-..=.+..|.+.
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS 227 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence 7777666532211000 001112233344555555555555444433333233344444
Q ss_pred eeecCCCCCcCchhHH--HHHhHhccCceecCCCCCCch
Q 021667 220 SLDLRQCFNVNLVGKL--GKICAERIRDLRHPNDSTHDY 256 (309)
Q Consensus 220 ~L~l~~c~~~~~~~~l--~~~~~~~L~~L~l~~~~~~d~ 256 (309)
.|.|+.. .++..+++ ...++ .|+.|+++.+++.|.
T Consensus 228 ~LnL~~~-~idswasvD~Ln~f~-~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 228 CLNLGAN-NIDSWASVDALNGFP-QLVDLRVSENPLSDP 264 (418)
T ss_pred hhhhccc-ccccHHHHHHHcCCc-hhheeeccCCccccc
Confidence 5555432 23332222 23456 788888888877554
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.54 E-value=7.7e-06 Score=51.91 Aligned_cols=38 Identities=24% Similarity=0.230 Sum_probs=16.7
Q ss_pred hCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCC
Q 021667 214 ACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDS 252 (309)
Q Consensus 214 ~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~ 252 (309)
.+++|++|++++|....-.......++ +|++|++++|+
T Consensus 23 ~l~~L~~L~l~~N~l~~i~~~~f~~l~-~L~~L~l~~N~ 60 (61)
T PF13855_consen 23 NLPNLETLDLSNNNLTSIPPDAFSNLP-NLRYLDLSNNN 60 (61)
T ss_dssp TGTTESEEEETSSSESEEETTTTTTST-TESEEEETSSS
T ss_pred CCCCCCEeEccCCccCccCHHHHcCCC-CCCEEeCcCCc
Confidence 345555555554333222222333444 55555555543
No 35
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.49 E-value=3.3e-05 Score=64.43 Aligned_cols=50 Identities=26% Similarity=0.539 Sum_probs=44.6
Q ss_pred CCCCCCCc----HHHHHHHhccCChhhhhhhhhhhcHHHHHhccCCCCCceeecC
Q 021667 10 SCDWTQLP----ADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMH 60 (309)
Q Consensus 10 ~~~~~~LP----~eiL~~If~~L~~~d~~~~~~~Vcr~W~~~~~~~~l~~~i~l~ 60 (309)
.++++.|| +++-+.||+||+..++. ++-+|||+|+++..+|.+|+++-..
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc-~celv~k~W~r~l~dg~~WKkLie~ 125 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLC-ACELVCKEWKRVLSDGMLWKKLIER 125 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhh-HHHHHHHHHHHHhccchHHHHHHHH
Confidence 36788999 99999999999999996 9999999999999999998876543
No 36
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=2.5e-05 Score=63.75 Aligned_cols=98 Identities=18% Similarity=0.212 Sum_probs=48.6
Q ss_pred CcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhC
Q 021667 136 LLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDAC 215 (309)
Q Consensus 136 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~ 215 (309)
+.+.|++.+|.++|. .++..+|.|+.|.|+-+.+ ..+..+. .|++|++|.|..|.|.+-.-...+.++
T Consensus 20 ~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkI--------ssL~pl~-rCtrLkElYLRkN~I~sldEL~YLknl 87 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKI--------SSLAPLQ-RCTRLKELYLRKNCIESLDELEYLKNL 87 (388)
T ss_pred HhhhhcccCCCccHH---HHHHhcccceeEEeecccc--------ccchhHH-HHHHHHHHHHHhcccccHHHHHHHhcC
Confidence 444455555555543 2234455555555552111 1122233 566666666666655554444455566
Q ss_pred CCCCeeecCCCCCcCc-----hhHHHHHhHhccCce
Q 021667 216 PHLESLDLRQCFNVNL-----VGKLGKICAERIRDL 246 (309)
Q Consensus 216 ~~L~~L~l~~c~~~~~-----~~~l~~~~~~~L~~L 246 (309)
|+|+.|+|..++.... -..+....| +|++|
T Consensus 88 psLr~LWL~ENPCc~~ag~nYR~~VLR~LP-nLkKL 122 (388)
T KOG2123|consen 88 PSLRTLWLDENPCCGEAGQNYRRKVLRVLP-NLKKL 122 (388)
T ss_pred chhhhHhhccCCcccccchhHHHHHHHHcc-cchhc
Confidence 6666666665554443 113334445 55554
No 37
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.44 E-value=2.4e-05 Score=70.81 Aligned_cols=63 Identities=22% Similarity=0.291 Sum_probs=42.8
Q ss_pred cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCc
Q 021667 189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHD 255 (309)
Q Consensus 189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d 255 (309)
.+++|+.|+|++|.|+.-.+. ...+.+|+.|+++.+....-.+++ -..+ +|+.|.+.+|.++=
T Consensus 243 ~l~~LrrLNLS~N~iteL~~~--~~~W~~lEtLNlSrNQLt~LP~av-cKL~-kL~kLy~n~NkL~F 305 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGNKITELNMT--EGEWENLETLNLSRNQLTVLPDAV-CKLT-KLTKLYANNNKLTF 305 (1255)
T ss_pred hhhhhheeccCcCceeeeecc--HHHHhhhhhhccccchhccchHHH-hhhH-HHHHHHhccCcccc
Confidence 677888888888887753322 224667888888887655534343 3456 78888888887643
No 38
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.44 E-value=2.1e-05 Score=71.24 Aligned_cols=42 Identities=14% Similarity=0.090 Sum_probs=22.7
Q ss_pred CCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhh
Q 021667 215 CPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEF 258 (309)
Q Consensus 215 ~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~ 258 (309)
+.+|..++++.+..-. ...-.-..+ +|+.|+|++|.++....
T Consensus 221 l~NL~dvDlS~N~Lp~-vPecly~l~-~LrrLNLS~N~iteL~~ 262 (1255)
T KOG0444|consen 221 LHNLRDVDLSENNLPI-VPECLYKLR-NLRRLNLSGNKITELNM 262 (1255)
T ss_pred hhhhhhccccccCCCc-chHHHhhhh-hhheeccCcCceeeeec
Confidence 3445555555433222 222223345 78888888888775543
No 39
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.34 E-value=3e-05 Score=72.97 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=26.3
Q ss_pred hCCCCCeeecCCCCCcCchhHHHHHhH-hccCceecCCCCCCchhhhhh
Q 021667 214 ACPHLESLDLRQCFNVNLVGKLGKICA-ERIRDLRHPNDSTHDYEFGAD 261 (309)
Q Consensus 214 ~~~~L~~L~l~~c~~~~~~~~l~~~~~-~~L~~L~l~~~~~~d~~~~~~ 261 (309)
..+.|+.+|++.+. ++.. .+....| ++|++|+++||.-.+.....+
T Consensus 450 ~l~qL~~lDlS~N~-L~~~-~l~~~~p~p~LkyLdlSGN~~l~~d~~~l 496 (1081)
T KOG0618|consen 450 QLPQLKVLDLSCNN-LSEV-TLPEALPSPNLKYLDLSGNTRLVFDHKTL 496 (1081)
T ss_pred hcCcceEEecccch-hhhh-hhhhhCCCcccceeeccCCcccccchhhh
Confidence 46778888886543 4332 1222222 389999999887433333333
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.32 E-value=0.00033 Score=58.12 Aligned_cols=39 Identities=23% Similarity=0.252 Sum_probs=17.5
Q ss_pred CCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCC
Q 021667 190 MHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFN 228 (309)
Q Consensus 190 ~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~ 228 (309)
+-+|..|++++|+|..-.-..=+.++|-|+.|.+.+++.
T Consensus 373 LYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 373 LYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 334555555555444221111122455555555555543
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.24 E-value=7.7e-05 Score=68.69 Aligned_cols=61 Identities=26% Similarity=0.307 Sum_probs=41.8
Q ss_pred cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCC
Q 021667 189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTH 254 (309)
Q Consensus 189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~ 254 (309)
-+|.|++|+|++|++++-. .+..|++|++|||+.+..-. +..+..... +|..|++++|.++
T Consensus 185 ll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc-~L~~L~lrnN~l~ 245 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNCLRH-VPQLSMVGC-KLQLLNLRNNALT 245 (1096)
T ss_pred HHHHhhhhccchhhhhhhH---HHHhcccccccccccchhcc-ccccchhhh-hheeeeecccHHH
Confidence 4568899999999877543 45578899999998865443 233333333 4888888887764
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.23 E-value=0.00013 Score=60.44 Aligned_cols=62 Identities=23% Similarity=0.231 Sum_probs=36.6
Q ss_pred cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCc
Q 021667 189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHD 255 (309)
Q Consensus 189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d 255 (309)
-.|.++.|+++.|.+..-+ . +..+++|.+|+++++.... ...+..... ++++|+|++|.+.+
T Consensus 305 L~Pkir~L~lS~N~i~~v~--n-La~L~~L~~LDLS~N~Ls~-~~Gwh~KLG-NIKtL~La~N~iE~ 366 (490)
T KOG1259|consen 305 LAPKLRRLILSQNRIRTVQ--N-LAELPQLQLLDLSGNLLAE-CVGWHLKLG-NIKTLKLAQNKIET 366 (490)
T ss_pred hccceeEEeccccceeeeh--h-hhhcccceEeecccchhHh-hhhhHhhhc-CEeeeehhhhhHhh
Confidence 3456666666666554221 1 2246677777777654332 444555666 78888888877643
No 43
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.20 E-value=0.0001 Score=66.59 Aligned_cols=174 Identities=22% Similarity=0.272 Sum_probs=107.9
Q ss_pred CCCceEEecc-ccCChHHHHHHHhcC----CCccEEEeCCCCCCCHHHHHHHHh---cCCCcCEEEecCCCCCHHHHHHH
Q 021667 84 NGQLLSINIE-YFGTDELLQYIANRS----RNLRNLRLVSCYNISDQGFCEAIK---GFPLLEELELSYCSLSQEALEAV 155 (309)
Q Consensus 84 ~~~l~~l~l~-~~~~~~~l~~l~~~~----~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~L~~~~~~~~~~~~l 155 (309)
.+.++.+++. +.+++.....+.... +.++.|.+..| .++..+...+.. ..+.|+.+++..|.+...+...+
T Consensus 114 ~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l 192 (478)
T KOG4308|consen 114 LPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVL 192 (478)
T ss_pred cccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHHHHHhcccchhHHHHHhcccchhhhHHH
Confidence 4456666663 355566666655543 33455666655 555544443333 35677777888776554444433
Q ss_pred Hh-------cCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCC-CcEEEecCCccChHHHHHHHHhCC----CCCeeec
Q 021667 156 GS-------LCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHG-LRHLQLFGNELTNVGLQAILDACP----HLESLDL 223 (309)
Q Consensus 156 ~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~i~~~~l~~l~~~~~----~L~~L~l 223 (309)
.+ ...++++|++.+|..+.. . -..+.......++ ++.|++..|.+.|.++..+....+ .++.+++
T Consensus 193 ~~~l~~~~~~~~~le~L~L~~~~~t~~--~-c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l 269 (478)
T KOG4308|consen 193 SQALESAASPLSSLETLKLSRCGVTSS--S-CALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDL 269 (478)
T ss_pred hhhhhhhhcccccHHHHhhhhcCcChH--H-HHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhh
Confidence 32 234688888887655422 1 1111222224455 667888888888888877776644 4588888
Q ss_pred CCCCCcCc----hhHHHHHhHhccCceecCCCCCCchhhhhhh
Q 021667 224 RQCFNVNL----VGKLGKICAERIRDLRHPNDSTHDYEFGADF 262 (309)
Q Consensus 224 ~~c~~~~~----~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~ 262 (309)
+.|..... .......++ +++.+.+..|++++++.....
T Consensus 270 ~~nsi~~~~~~~L~~~l~~~~-~l~~l~l~~n~l~~~~~~~~~ 311 (478)
T KOG4308|consen 270 SRNSITEKGVRDLAEVLVSCR-QLEELSLSNNPLTDYGVELLL 311 (478)
T ss_pred hcCCccccchHHHHHHHhhhH-HHHHhhcccCccccHHHHHHH
Confidence 88876654 446666778 899999999999888887755
No 44
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.00017 Score=59.05 Aligned_cols=102 Identities=28% Similarity=0.401 Sum_probs=55.6
Q ss_pred CCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHH
Q 021667 108 SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIA 187 (309)
Q Consensus 108 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 187 (309)
+.+.+.|++++| .++|.. +...+|.|+.|.|+-|.|+. +..+ ..|.+|++|.|..+.+ ..-..+..+.
T Consensus 18 l~~vkKLNcwg~-~L~DIs---ic~kMp~lEVLsLSvNkIss--L~pl-~rCtrLkElYLRkN~I-----~sldEL~YLk 85 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDIS---ICEKMPLLEVLSLSVNKISS--LAPL-QRCTRLKELYLRKNCI-----ESLDELEYLK 85 (388)
T ss_pred HHHhhhhcccCC-CccHHH---HHHhcccceeEEeecccccc--chhH-HHHHHHHHHHHHhccc-----ccHHHHHHHh
Confidence 445666777666 555532 34566777777777776643 3333 2366777776663222 2233334444
Q ss_pred hcCCCCcEEEecCCccC----hHHHHHHHHhCCCCCeee
Q 021667 188 ENMHGLRHLQLFGNELT----NVGLQAILDACPHLESLD 222 (309)
Q Consensus 188 ~~~~~L~~L~l~~~~i~----~~~l~~l~~~~~~L~~L~ 222 (309)
++|+|+.|-|..|.-. ..-=..+++.+|+|+.||
T Consensus 86 -nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 86 -NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred -cCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 6777777777665211 112234455567777664
No 45
>PLN03150 hypothetical protein; Provisional
Probab=97.10 E-value=0.0011 Score=62.56 Aligned_cols=84 Identities=19% Similarity=0.143 Sum_probs=38.3
Q ss_pred cCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCC
Q 021667 137 LEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACP 216 (309)
Q Consensus 137 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~ 216 (309)
++.|+|+++.+.......+ ..+++|+.|+++++.+... ....+. .+++|+.|+|++|.++...... +..++
T Consensus 420 v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~------iP~~~~-~l~~L~~LdLs~N~lsg~iP~~-l~~L~ 490 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGN------IPPSLG-SITSLEVLDLSYNSFNGSIPES-LGQLT 490 (623)
T ss_pred EEEEECCCCCccccCCHHH-hCCCCCCEEECCCCcccCc------CChHHh-CCCCCCEEECCCCCCCCCCchH-HhcCC
Confidence 4455555554432211122 2355666666655433211 111222 5566666666666554322222 22455
Q ss_pred CCCeeecCCCCCc
Q 021667 217 HLESLDLRQCFNV 229 (309)
Q Consensus 217 ~L~~L~l~~c~~~ 229 (309)
+|+.|+|++|...
T Consensus 491 ~L~~L~Ls~N~l~ 503 (623)
T PLN03150 491 SLRILNLNGNSLS 503 (623)
T ss_pred CCCEEECcCCccc
Confidence 6666666655433
No 46
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=97.09 E-value=0.0004 Score=60.14 Aligned_cols=38 Identities=21% Similarity=0.653 Sum_probs=34.0
Q ss_pred CCCCCCcHHHHHHHhccC-ChhhhhhhhhhhcHHHHHhcc
Q 021667 11 CDWTQLPADVTSTILSKI-GAIDVLTSAQRVCSSWLRICH 49 (309)
Q Consensus 11 ~~~~~LP~eiL~~If~~L-~~~d~~~~~~~Vcr~W~~~~~ 49 (309)
..|++||+|+|..|...| ...|++ +.+.||+.||..+.
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~-~~~~vC~sWr~a~~ 40 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELK-RFRSICRSWRSSVS 40 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHH-HHHhhhhhHHHhcc
Confidence 469999999999999999 566775 99999999999876
No 47
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.07 E-value=8.6e-05 Score=60.11 Aligned_cols=35 Identities=34% Similarity=0.511 Sum_probs=16.7
Q ss_pred CCCcCEEEecCC--CCCHHHHHHHHhcCCCCcEEEecc
Q 021667 134 FPLLEELELSYC--SLSQEALEAVGSLCPLLRSFKLNN 169 (309)
Q Consensus 134 ~~~L~~L~L~~~--~~~~~~~~~l~~~~~~L~~L~l~~ 169 (309)
+|+|+.|.++.| ++. .++..++..+|+|++|++++
T Consensus 64 Lp~LkkL~lsdn~~~~~-~~l~vl~e~~P~l~~l~ls~ 100 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVS-GGLEVLAEKAPNLKVLNLSG 100 (260)
T ss_pred cchhhhhcccCCccccc-ccceehhhhCCceeEEeecC
Confidence 455555555555 221 22444444455555555554
No 48
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.07 E-value=1.5e-05 Score=60.50 Aligned_cols=38 Identities=24% Similarity=0.355 Sum_probs=23.2
Q ss_pred hCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCC
Q 021667 214 ACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDST 253 (309)
Q Consensus 214 ~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~ 253 (309)
.+.+|+.|.++++..++-...+.. .. +|++|.+.||.+
T Consensus 148 ~lt~lqil~lrdndll~lpkeig~-lt-~lrelhiqgnrl 185 (264)
T KOG0617|consen 148 KLTNLQILSLRDNDLLSLPKEIGD-LT-RLRELHIQGNRL 185 (264)
T ss_pred hhcceeEEeeccCchhhCcHHHHH-HH-HHHHHhccccee
Confidence 345677777777666664434332 33 577777777764
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.02 E-value=9.8e-05 Score=46.75 Aligned_cols=60 Identities=18% Similarity=0.043 Sum_probs=45.5
Q ss_pred CCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccc
Q 021667 216 PHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIE 281 (309)
Q Consensus 216 ~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~ 281 (309)
|+|++|++++|....-.......++ +|++|++++|.++...-.++. ..+.+..++++++.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~-~L~~L~l~~N~l~~i~~~~f~-----~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLP-NLETLDLSNNNLTSIPPDAFS-----NLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGT-TESEEEETSSSESEEETTTTT-----TSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCC-CCCEeEccCCccCccCHHHHc-----CCCCCCEEeCcCCc
Confidence 6789999998854333445666788 999999999999877666775 67778888887653
No 50
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.85 E-value=0.00023 Score=64.36 Aligned_cols=167 Identities=22% Similarity=0.188 Sum_probs=86.5
Q ss_pred CCCccEEEeCCCCCCCHHHHHHHHhcC----CCcCEEEecCCCCCHHHHHHHHhc---CCCCcEEEeccCCCCCCCcccc
Q 021667 108 SRNLRNLRLVSCYNISDQGFCEAIKGF----PLLEELELSYCSLSQEALEAVGSL---CPLLRSFKLNNRGHRCPKIECD 180 (309)
Q Consensus 108 ~~~L~~L~l~~~~~~~~~~~~~~~~~~----~~L~~L~L~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~~~~ 180 (309)
.+.|..|+++++ .+++.+...+...+ +.|+.|.+..|.+++.+...++.. ++.++.+++..+.+... ...
T Consensus 114 ~~~L~~L~l~~n-~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~--g~~ 190 (478)
T KOG4308|consen 114 LPTLGQLDLSGN-NLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIEL--GLL 190 (478)
T ss_pred cccHhHhhcccC-CCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchh--hhH
Confidence 667777777754 55566666555544 345566666676665555444332 45566666654443211 001
Q ss_pred hhHHHHHh---cCCCCcEEEecCCccChHHHHHHHHhCCC----CCeeecCCCCCcCc-hhHHHHHhH---hccCceecC
Q 021667 181 DDAKAIAE---NMHGLRHLQLFGNELTNVGLQAILDACPH----LESLDLRQCFNVNL-VGKLGKICA---ERIRDLRHP 249 (309)
Q Consensus 181 ~~~~~l~~---~~~~L~~L~l~~~~i~~~~l~~l~~~~~~----L~~L~l~~c~~~~~-~~~l~~~~~---~~L~~L~l~ 249 (309)
.....+.. ...++++|++.+|.++......+....+. +..|++..+..-+. ...+....+ .++++++++
T Consensus 191 ~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~ 270 (478)
T KOG4308|consen 191 VLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLS 270 (478)
T ss_pred HHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhh
Confidence 11111121 34567777787777776665555444332 44466654433322 222222222 256778888
Q ss_pred CCCCCchhhhhhhhhhccCCcCCCCCCCC
Q 021667 250 NDSTHDYEFGADFQDFCWSSVEDYPSGIS 278 (309)
Q Consensus 250 ~~~~~d~~~~~~~~~~c~~~~~l~~~~~s 278 (309)
.|++++.|....+ +.-..++.++++.++
T Consensus 271 ~nsi~~~~~~~L~-~~l~~~~~l~~l~l~ 298 (478)
T KOG4308|consen 271 RNSITEKGVRDLA-EVLVSCRQLEELSLS 298 (478)
T ss_pred cCCccccchHHHH-HHHhhhHHHHHhhcc
Confidence 8887777766655 222233344444444
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.79 E-value=0.0012 Score=38.59 Aligned_cols=34 Identities=35% Similarity=0.509 Sum_probs=16.1
Q ss_pred CCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCC
Q 021667 192 GLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCF 227 (309)
Q Consensus 192 ~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 227 (309)
+|++|++++|.|++ +...+..+++|+.|++++|.
T Consensus 2 ~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence 45556666655553 22223355555555555543
No 52
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.78 E-value=0.00029 Score=60.45 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=14.3
Q ss_pred hcCCCCcEEEecCCccCh
Q 021667 188 ENMHGLRHLQLFGNELTN 205 (309)
Q Consensus 188 ~~~~~L~~L~l~~~~i~~ 205 (309)
+.+|+|+.|+|++|.++.
T Consensus 271 ~~L~~L~~lnlsnN~i~~ 288 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNNKITR 288 (498)
T ss_pred hhcccceEeccCCCccch
Confidence 367899999999987663
No 53
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.76 E-value=0.00057 Score=55.47 Aligned_cols=106 Identities=25% Similarity=0.322 Sum_probs=60.9
Q ss_pred CCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHH
Q 021667 134 FPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILD 213 (309)
Q Consensus 134 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~ 213 (309)
+..|+.|.+.++.++. +..+ ..+|+|+.|.++.+.+. ...++..++..+|+|++|++++|.|.+-.-..=++
T Consensus 42 ~~~le~ls~~n~gltt--~~~~-P~Lp~LkkL~lsdn~~~-----~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~ 113 (260)
T KOG2739|consen 42 FVELELLSVINVGLTT--LTNF-PKLPKLKKLELSDNYRR-----VSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK 113 (260)
T ss_pred ccchhhhhhhccceee--cccC-CCcchhhhhcccCCccc-----ccccceehhhhCCceeEEeecCCccccccccchhh
Confidence 4455555555543322 1111 23678888888754222 24455566667799999999999777422222233
Q ss_pred hCCCCCeeecCCCCCcC--c-hhHHHHHhHhccCceec
Q 021667 214 ACPHLESLDLRQCFNVN--L-VGKLGKICAERIRDLRH 248 (309)
Q Consensus 214 ~~~~L~~L~l~~c~~~~--~-~~~l~~~~~~~L~~L~l 248 (309)
..++|..|++..|.-.. + ...++...+ +|+.|+-
T Consensus 114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~-~L~~LD~ 150 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTNLDDYREKVFLLLP-SLKYLDG 150 (260)
T ss_pred hhcchhhhhcccCCccccccHHHHHHHHhh-hhccccc
Confidence 56778888888876433 2 234444455 6665543
No 54
>PLN03150 hypothetical protein; Provisional
Probab=96.76 E-value=0.0032 Score=59.52 Aligned_cols=107 Identities=18% Similarity=0.163 Sum_probs=63.5
Q ss_pred ccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcC
Q 021667 111 LRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENM 190 (309)
Q Consensus 111 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~ 190 (309)
+..|+|.++ .++. .+..-+..+++|+.|+|++|.+... +......+++|+.|+++++.+... ....+. .+
T Consensus 420 v~~L~L~~n-~L~g-~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~------iP~~l~-~L 489 (623)
T PLN03150 420 IDGLGLDNQ-GLRG-FIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGS------IPESLG-QL 489 (623)
T ss_pred EEEEECCCC-Cccc-cCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCC------CchHHh-cC
Confidence 455555543 2221 1223345688999999999866533 222235588899999987655422 122344 78
Q ss_pred CCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCC
Q 021667 191 HGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCF 227 (309)
Q Consensus 191 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 227 (309)
++|+.|+|++|.++...-..+.....++..+++.++.
T Consensus 490 ~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 490 TSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 8999999999876643333333223456667666554
No 55
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.72 E-value=0.0023 Score=61.17 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=9.8
Q ss_pred CCCCcEEEecCCccC
Q 021667 190 MHGLRHLQLFGNELT 204 (309)
Q Consensus 190 ~~~L~~L~l~~~~i~ 204 (309)
.++|+.|++++|.++
T Consensus 301 p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 301 PPGLQELSVSDNQLA 315 (788)
T ss_pred ccccceeECCCCccc
Confidence 356777777777554
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.70 E-value=0.00031 Score=64.85 Aligned_cols=108 Identities=22% Similarity=0.198 Sum_probs=70.9
Q ss_pred HHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHh-cCCCCcEEEecCCccChHH
Q 021667 129 EAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAE-NMHGLRHLQLFGNELTNVG 207 (309)
Q Consensus 129 ~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~~~L~~L~l~~~~i~~~~ 207 (309)
..++-+|.|++|+|++|++++.. ..+.||+|++|+++++.+.-. ..+.. .|. |..|.+++|.++.
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~L~~v--------p~l~~~gc~-L~~L~lrnN~l~t-- 246 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNCLRHV--------PQLSMVGCK-LQLLNLRNNALTT-- 246 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH---HHHhcccccccccccchhccc--------cccchhhhh-heeeeecccHHHh--
Confidence 34455688999999999887643 345699999999987554321 11111 333 8899999986652
Q ss_pred HHHHHHhCCCCCeeecCCCCCcCchh--HHHHHhHhccCceecCCCCC
Q 021667 208 LQAILDACPHLESLDLRQCFNVNLVG--KLGKICAERIRDLRHPNDST 253 (309)
Q Consensus 208 l~~l~~~~~~L~~L~l~~c~~~~~~~--~l~~~~~~~L~~L~l~~~~~ 253 (309)
+.-+ +++.+|+.||++++-... .. ....... .|+.|.|.||++
T Consensus 247 L~gi-e~LksL~~LDlsyNll~~-hseL~pLwsLs-~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 247 LRGI-ENLKSLYGLDLSYNLLSE-HSELEPLWSLS-SLIVLWLEGNPL 291 (1096)
T ss_pred hhhH-HhhhhhhccchhHhhhhc-chhhhHHHHHH-HHHHHhhcCCcc
Confidence 3322 257789999998754333 22 2223345 789999999986
No 57
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.67 E-value=0.002 Score=32.78 Aligned_cols=23 Identities=43% Similarity=0.612 Sum_probs=14.9
Q ss_pred CCCCcEEEecCC-ccChHHHHHHH
Q 021667 190 MHGLRHLQLFGN-ELTNVGLQAIL 212 (309)
Q Consensus 190 ~~~L~~L~l~~~-~i~~~~l~~l~ 212 (309)
||+|++|+|++| .++|.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 456666666666 66666666654
No 58
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.62 E-value=0.0027 Score=32.34 Aligned_cols=24 Identities=42% Similarity=0.684 Sum_probs=15.9
Q ss_pred CCCccEEEeCCCCCCCHHHHHHHH
Q 021667 108 SRNLRNLRLVSCYNISDQGFCEAI 131 (309)
Q Consensus 108 ~~~L~~L~l~~~~~~~~~~~~~~~ 131 (309)
|++|++|+|++|..+++.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 466777777777667776666554
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.61 E-value=0.0026 Score=37.12 Aligned_cols=37 Identities=22% Similarity=0.152 Sum_probs=17.6
Q ss_pred CCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCc
Q 021667 217 HLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHD 255 (309)
Q Consensus 217 ~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d 255 (309)
+|++|+++++.. +++......++ +|+.|++++|++++
T Consensus 2 ~L~~L~l~~N~i-~~l~~~l~~l~-~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQI-TDLPPELSNLP-NLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS--SSHGGHGTTCT-TSSEEEETSSCCSB
T ss_pred cceEEEccCCCC-cccCchHhCCC-CCCEEEecCCCCCC
Confidence 455555555432 23333334455 55555555555554
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.37 E-value=0.004 Score=45.82 Aligned_cols=65 Identities=23% Similarity=0.251 Sum_probs=35.4
Q ss_pred HHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCC
Q 021667 185 AIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDST 253 (309)
Q Consensus 185 ~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~ 253 (309)
.+...+|.++.|++.+|.+++--.. +..+|.|+.|+++.++.......++. .. ++-.|+..++..
T Consensus 71 kft~kf~t~t~lNl~~neisdvPeE--~Aam~aLr~lNl~~N~l~~~p~vi~~-L~-~l~~Lds~~na~ 135 (177)
T KOG4579|consen 71 KFTIKFPTATTLNLANNEISDVPEE--LAAMPALRSLNLRFNPLNAEPRVIAP-LI-KLDMLDSPENAR 135 (177)
T ss_pred HHhhccchhhhhhcchhhhhhchHH--HhhhHHhhhcccccCccccchHHHHH-HH-hHHHhcCCCCcc
Confidence 3333555666666666666543333 33566666666666655544433333 44 555666666554
No 61
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=96.17 E-value=0.0056 Score=30.41 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=17.1
Q ss_pred CCCCcEEEecCCccChHHHHHHH
Q 021667 190 MHGLRHLQLFGNELTNVGLQAIL 212 (309)
Q Consensus 190 ~~~L~~L~l~~~~i~~~~l~~l~ 212 (309)
+++|++|+|++|.|+++++..+.
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 47889999999999998888775
No 62
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.05 E-value=0.0046 Score=59.21 Aligned_cols=64 Identities=17% Similarity=0.080 Sum_probs=37.0
Q ss_pred CCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhh
Q 021667 191 HGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGAD 261 (309)
Q Consensus 191 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~ 261 (309)
++|+.|++++|.++. +.. ...+|+.|+++++...+ +..-...++ +|+.|+|++|++++.....+
T Consensus 402 s~L~~LdLS~N~Lss--IP~---l~~~L~~L~Ls~NqLt~-LP~sl~~L~-~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 402 SELKELMVSGNRLTS--LPM---LPSGLLSLSVYRNQLTR-LPESLIHLS-SETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred cCCCEEEccCCcCCC--CCc---chhhhhhhhhccCcccc-cChHHhhcc-CCCeEECCCCCCCchHHHHH
Confidence 456666666665542 111 12346666666655332 222234566 88999999999887655544
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.01 E-value=0.0037 Score=48.98 Aligned_cols=90 Identities=22% Similarity=0.309 Sum_probs=51.8
Q ss_pred HhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHH
Q 021667 131 IKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQA 210 (309)
Q Consensus 131 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~ 210 (309)
+.++++|..|.|..|.|+.- -..+....|+|+.|.+.++.+ ..-..+..++ .||+|++|.+-+|.+++..-..
T Consensus 60 lp~l~rL~tLll~nNrIt~I-~p~L~~~~p~l~~L~LtnNsi-----~~l~dl~pLa-~~p~L~~Ltll~Npv~~k~~YR 132 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRI-DPDLDTFLPNLKTLILTNNSI-----QELGDLDPLA-SCPKLEYLTLLGNPVEHKKNYR 132 (233)
T ss_pred CCCccccceEEecCCcceee-ccchhhhccccceEEecCcch-----hhhhhcchhc-cCCccceeeecCCchhcccCce
Confidence 34567777788877755432 122344567777777775332 2233344445 7777888888777666543211
Q ss_pred --HHHhCCCCCeeecCCCC
Q 021667 211 --ILDACPHLESLDLRQCF 227 (309)
Q Consensus 211 --l~~~~~~L~~L~l~~c~ 227 (309)
++-..|+|+.||.....
T Consensus 133 ~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 133 LYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eEEEEecCcceEeehhhhh
Confidence 12236777777776543
No 64
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.98 E-value=0.0054 Score=53.13 Aligned_cols=115 Identities=17% Similarity=0.151 Sum_probs=67.7
Q ss_pred HHHhcCCCcCEEEecCC---CCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccCh
Q 021667 129 EAIKGFPLLEELELSYC---SLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTN 205 (309)
Q Consensus 129 ~~~~~~~~L~~L~L~~~---~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~ 205 (309)
..+..+++|..|+|++| +++.+. .....|+.|+++.+.|.+. ..... ....|+.+-.+++++..
T Consensus 429 ~~l~~l~kLt~L~L~NN~Ln~LP~e~-----~~lv~Lq~LnlS~NrFr~l----P~~~y----~lq~lEtllas~nqi~~ 495 (565)
T KOG0472|consen 429 LELSQLQKLTFLDLSNNLLNDLPEEM-----GSLVRLQTLNLSFNRFRML----PECLY----ELQTLETLLASNNQIGS 495 (565)
T ss_pred HHHHhhhcceeeecccchhhhcchhh-----hhhhhhheecccccccccc----hHHHh----hHHHHHHHHhccccccc
Confidence 34556788888888887 444332 2244588888887655432 11111 22234445455555442
Q ss_pred HHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhh
Q 021667 206 VGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFG 259 (309)
Q Consensus 206 ~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~ 259 (309)
-....+ .++.+|..|++..+.... +.....++. +|++|.+.||++.-...+
T Consensus 496 vd~~~l-~nm~nL~tLDL~nNdlq~-IPp~Lgnmt-nL~hLeL~gNpfr~Pr~~ 546 (565)
T KOG0472|consen 496 VDPSGL-KNMRNLTTLDLQNNDLQQ-IPPILGNMT-NLRHLELDGNPFRQPRHQ 546 (565)
T ss_pred cChHHh-hhhhhcceeccCCCchhh-CChhhcccc-ceeEEEecCCccCCCHHH
Confidence 222222 256778889997655433 556667778 899999999987643333
No 65
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=95.76 E-value=0.037 Score=53.29 Aligned_cols=12 Identities=17% Similarity=0.224 Sum_probs=5.8
Q ss_pred ccCceecCCCCC
Q 021667 242 RIRDLRHPNDST 253 (309)
Q Consensus 242 ~L~~L~l~~~~~ 253 (309)
+|+.|+|++|.+
T Consensus 368 ~L~~LdLs~N~L 379 (754)
T PRK15370 368 TITTLDVSRNAL 379 (754)
T ss_pred CcCEEECCCCcC
Confidence 445555554444
No 66
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=95.50 E-value=0.00017 Score=54.92 Aligned_cols=109 Identities=21% Similarity=0.261 Sum_probs=56.2
Q ss_pred CCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHH
Q 021667 108 SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIA 187 (309)
Q Consensus 108 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 187 (309)
+++|+.|++.-. ++. .+..=+..+|.|+.|+|.++.+....+..-...+..|+.|.++.+++.- ....+.
T Consensus 78 l~klr~lnvgmn-rl~--~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~-------lp~dvg 147 (264)
T KOG0617|consen 78 LPKLRILNVGMN-RLN--ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI-------LPPDVG 147 (264)
T ss_pred chhhhheecchh-hhh--cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCccc-------CChhhh
Confidence 566666665521 111 0111123456677777766655443332222223445555565443321 112233
Q ss_pred hcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCc
Q 021667 188 ENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNV 229 (309)
Q Consensus 188 ~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~ 229 (309)
.+++|+.|.++.|.+- .+..-+..+.+|++|++.++...
T Consensus 148 -~lt~lqil~lrdndll--~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 148 -KLTNLQILSLRDNDLL--SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred -hhcceeEEeeccCchh--hCcHHHHHHHHHHHHhcccceee
Confidence 7889999999988332 11222224557999999887643
No 67
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.26 E-value=0.016 Score=28.74 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=13.1
Q ss_pred CCCcCEEEecCCCCCHHHHHHHH
Q 021667 134 FPLLEELELSYCSLSQEALEAVG 156 (309)
Q Consensus 134 ~~~L~~L~L~~~~~~~~~~~~l~ 156 (309)
+++|++|+|++|.+++.++..++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 35667777777777666666554
No 68
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.25 E-value=0.0065 Score=47.65 Aligned_cols=35 Identities=29% Similarity=0.470 Sum_probs=14.7
Q ss_pred CCCcCEEEecCCCCCHH-HHHHHHhcCCCCcEEEecc
Q 021667 134 FPLLEELELSYCSLSQE-ALEAVGSLCPLLRSFKLNN 169 (309)
Q Consensus 134 ~~~L~~L~L~~~~~~~~-~~~~l~~~~~~L~~L~l~~ 169 (309)
+|+|+.|.|.+|++..- .+..++ .||+|+.|.+-+
T Consensus 87 ~p~l~~L~LtnNsi~~l~dl~pLa-~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 87 LPNLKTLILTNNSIQELGDLDPLA-SCPKLEYLTLLG 122 (233)
T ss_pred ccccceEEecCcchhhhhhcchhc-cCCccceeeecC
Confidence 34555555555533211 122222 255555555543
No 69
>PF13013 F-box-like_2: F-box-like domain
Probab=95.10 E-value=0.032 Score=39.48 Aligned_cols=30 Identities=20% Similarity=0.312 Sum_probs=26.7
Q ss_pred CCCCCcHHHHHHHhccCChhhhhhhhhhhcH
Q 021667 12 DWTQLPADVTSTILSKIGAIDVLTSAQRVCS 42 (309)
Q Consensus 12 ~~~~LP~eiL~~If~~L~~~d~~~~~~~Vcr 42 (309)
.+.+||+|++..||.+....+.+ .+...|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~-~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILL-ALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHH-HHHHHHH
Confidence 48899999999999999999985 7777777
No 70
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=95.01 E-value=0.041 Score=28.48 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=21.5
Q ss_pred CCCcEEEecCCccChHHHHHHHHhC
Q 021667 191 HGLRHLQLFGNELTNVGLQAILDAC 215 (309)
Q Consensus 191 ~~L~~L~l~~~~i~~~~l~~l~~~~ 215 (309)
++|++|+|++|.++++|...+++.+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L 26 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEAL 26 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHh
Confidence 6799999999999999998887654
No 71
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=94.47 E-value=0.03 Score=54.83 Aligned_cols=42 Identities=26% Similarity=0.191 Sum_probs=25.9
Q ss_pred HhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCC
Q 021667 105 ANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLS 148 (309)
Q Consensus 105 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 148 (309)
...+|.|..|+|+++...+ .++..+..+-+|+.|+|+++.+.
T Consensus 567 f~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~~t~I~ 608 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLSDTGIS 608 (889)
T ss_pred HhhCcceEEEECCCCCccC--cCChHHhhhhhhhcccccCCCcc
Confidence 4557888888888654333 23444455667777777776553
No 72
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=94.28 E-value=0.034 Score=49.54 Aligned_cols=61 Identities=23% Similarity=0.315 Sum_probs=31.3
Q ss_pred cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCC
Q 021667 189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTH 254 (309)
Q Consensus 189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~ 254 (309)
.+.++..+.+.++.+.+. ......++.|+.|+++++.... ... ..... +++.|+++++.++
T Consensus 230 ~~~~l~~l~l~~n~~~~~--~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~-~l~~L~~s~n~~~ 290 (394)
T COG4886 230 NLKNLSGLELSNNKLEDL--PESIGNLSNLETLDLSNNQISS-ISS-LGSLT-NLRELDLSGNSLS 290 (394)
T ss_pred hcccccccccCCceeeec--cchhccccccceeccccccccc-ccc-ccccC-ccCEEeccCcccc
Confidence 344455555555443321 1223345567777776655333 222 33344 6777777776653
No 73
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=94.07 E-value=0.02 Score=52.79 Aligned_cols=48 Identities=27% Similarity=0.570 Sum_probs=40.6
Q ss_pred cCCCCCCCCcHHHHHHHhccCChhhhhhhhhhhcHHHHHhccC-CCCCce
Q 021667 8 QESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHD-PAMWRN 56 (309)
Q Consensus 8 ~~~~~~~~LP~eiL~~If~~L~~~d~~~~~~~Vcr~W~~~~~~-~~l~~~ 56 (309)
.-.+.++.||.|+...||.||+.++++ ++++||+.|+.++.+ +..|+.
T Consensus 103 ~~~dfi~~lp~el~~~il~~Ld~~~l~-~~~~v~~~w~~~~~~~~~~~~~ 151 (537)
T KOG0274|consen 103 GQRDFLSLLPSELSLHILSFLDGRDLL-AVRQVCRNWNKLLDDDKVWWRM 151 (537)
T ss_pred cccchhhcccchhcccccccCCHHHhh-hhhhhcchhhhhhhccchhhhh
Confidence 345789999999999999999999996 999999999999984 444433
No 74
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=93.72 E-value=0.14 Score=49.51 Aligned_cols=98 Identities=17% Similarity=0.155 Sum_probs=49.9
Q ss_pred CCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHh
Q 021667 135 PLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDA 214 (309)
Q Consensus 135 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~ 214 (309)
++|++|++++|.+.. +.. ...++|+.|.++++.+... .. .+ ..+|+.|++++|.++. +..- -
T Consensus 220 ~nL~~L~Ls~N~Lts--LP~--~l~~~L~~L~Ls~N~L~~L----P~---~l---~s~L~~L~Ls~N~L~~--LP~~--l 281 (754)
T PRK15370 220 GNIKTLYANSNQLTS--IPA--TLPDTIQEMELSINRITEL----PE---RL---PSALQSLDLFHNKISC--LPEN--L 281 (754)
T ss_pred cCCCEEECCCCcccc--CCh--hhhccccEEECcCCccCcC----Ch---hH---hCCCCEEECcCCccCc--cccc--c
Confidence 466666666664432 110 0123566666665443311 11 11 1367777777776652 1110 1
Q ss_pred CCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCC
Q 021667 215 CPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTH 254 (309)
Q Consensus 215 ~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~ 254 (309)
+++|+.|++++|....-... .+.+|+.|++++|.++
T Consensus 282 ~~sL~~L~Ls~N~Lt~LP~~----lp~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 282 PEELRYLSVYDNSIRTLPAH----LPSGITHLNVQSNSLT 317 (754)
T ss_pred CCCCcEEECCCCccccCccc----chhhHHHHHhcCCccc
Confidence 24688888877653321111 1226777888877765
No 75
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=93.70 E-value=0.016 Score=52.04 Aligned_cols=106 Identities=22% Similarity=0.284 Sum_probs=53.5
Q ss_pred CCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHH
Q 021667 108 SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIA 187 (309)
Q Consensus 108 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 187 (309)
+.+|..|.+.+. .+. .+..+...+++|++|++++|.|++ +..+.. ++.|+.|.+.++.+... ..+.
T Consensus 94 ~~~l~~l~l~~n-~i~--~i~~~l~~~~~L~~L~ls~N~I~~--i~~l~~-l~~L~~L~l~~N~i~~~--------~~~~ 159 (414)
T KOG0531|consen 94 LKSLEALDLYDN-KIE--KIENLLSSLVNLQVLDLSFNKITK--LEGLST-LTLLKELNLSGNLISDI--------SGLE 159 (414)
T ss_pred ccceeeeecccc-chh--hcccchhhhhcchheecccccccc--ccchhh-ccchhhheeccCcchhc--------cCCc
Confidence 456666666532 222 112213456777777777776543 222222 44477777765433211 1111
Q ss_pred hcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCc
Q 021667 188 ENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNV 229 (309)
Q Consensus 188 ~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~ 229 (309)
.+++|+.+++++|.++...-.. ...+.+++.+.+.++...
T Consensus 160 -~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 160 -SLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred -cchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 2566677777776555433211 345666777777665433
No 76
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=93.50 E-value=0.12 Score=26.65 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=18.1
Q ss_pred CCcCEEEecCCCCCHHHHHHHHhc
Q 021667 135 PLLEELELSYCSLSQEALEAVGSL 158 (309)
Q Consensus 135 ~~L~~L~L~~~~~~~~~~~~l~~~ 158 (309)
++|++|+|++|.+++++...++..
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHH
Confidence 467888888888888877777654
No 77
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=93.44 E-value=0.049 Score=47.28 Aligned_cols=89 Identities=18% Similarity=0.125 Sum_probs=51.7
Q ss_pred HhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHH
Q 021667 156 GSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKL 235 (309)
Q Consensus 156 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l 235 (309)
.+.+|+|++|+++++.++.. .-.++. ...+|+.|.|..|++..-.- .++.+...|+.|+|.+++..+-....
T Consensus 270 f~~L~~L~~lnlsnN~i~~i------~~~aFe-~~a~l~eL~L~~N~l~~v~~-~~f~~ls~L~tL~L~~N~it~~~~~a 341 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRI------EDGAFE-GAAELQELYLTRNKLEFVSS-GMFQGLSGLKTLSLYDNQITTVAPGA 341 (498)
T ss_pred HhhcccceEeccCCCccchh------hhhhhc-chhhhhhhhcCcchHHHHHH-HhhhccccceeeeecCCeeEEEeccc
Confidence 45577788888876544321 111222 55677777777775543222 23446677888888776654432233
Q ss_pred HHHhHhccCceecCCCCC
Q 021667 236 GKICAERIRDLRHPNDST 253 (309)
Q Consensus 236 ~~~~~~~L~~L~l~~~~~ 253 (309)
+.... .|.+|++-+|++
T Consensus 342 F~~~~-~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 342 FQTLF-SLSTLNLLSNPF 358 (498)
T ss_pred ccccc-eeeeeehccCcc
Confidence 34444 677777777764
No 78
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=93.18 E-value=0.056 Score=48.17 Aligned_cols=83 Identities=28% Similarity=0.330 Sum_probs=39.3
Q ss_pred CCccEEEeCCCCCCCHHHHHHHHhcC-CCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHH
Q 021667 109 RNLRNLRLVSCYNISDQGFCEAIKGF-PLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIA 187 (309)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 187 (309)
+.++.|.+.+. .++. +....... ++|+.|+++.+.+.... .-...+++|+.|.+..+.+. .+....
T Consensus 116 ~~l~~L~l~~n-~i~~--i~~~~~~~~~nL~~L~l~~N~i~~l~--~~~~~l~~L~~L~l~~N~l~--------~l~~~~ 182 (394)
T COG4886 116 TNLTSLDLDNN-NITD--IPPLIGLLKSNLKELDLSDNKIESLP--SPLRNLPNLKNLDLSFNDLS--------DLPKLL 182 (394)
T ss_pred cceeEEecCCc-cccc--Cccccccchhhcccccccccchhhhh--hhhhccccccccccCCchhh--------hhhhhh
Confidence 45666666532 2222 22222223 26677777666554321 12244666777766643221 111111
Q ss_pred hcCCCCcEEEecCCccC
Q 021667 188 ENMHGLRHLQLFGNELT 204 (309)
Q Consensus 188 ~~~~~L~~L~l~~~~i~ 204 (309)
...++|+.|.++++.++
T Consensus 183 ~~~~~L~~L~ls~N~i~ 199 (394)
T COG4886 183 SNLSNLNNLDLSGNKIS 199 (394)
T ss_pred hhhhhhhheeccCCccc
Confidence 14566666666666544
No 79
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=93.14 E-value=0.1 Score=51.31 Aligned_cols=110 Identities=24% Similarity=0.176 Sum_probs=47.6
Q ss_pred CCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHH
Q 021667 108 SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIA 187 (309)
Q Consensus 108 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 187 (309)
+++|.+|-+.....--...-..++..+|.|..|+|++|.-... +......+-+|+.|++.+.+. ......+.
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~LryL~L~~t~I-------~~LP~~l~ 615 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRYLDLSDTGI-------SHLPSGLG 615 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc-CChHHhhhhhhhcccccCCCc-------cccchHHH
Confidence 4555555555321101111222345566666666666511111 111112244566666654221 11122222
Q ss_pred hcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCC
Q 021667 188 ENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCF 227 (309)
Q Consensus 188 ~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 227 (309)
++..|.+|++..+..-. .+..+...+++|++|.+....
T Consensus 616 -~Lk~L~~Lnl~~~~~l~-~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 616 -NLKKLIYLNLEVTGRLE-SIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred -HHHhhheeccccccccc-cccchhhhcccccEEEeeccc
Confidence 55566666666552110 012233346677777775443
No 80
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=92.82 E-value=0.16 Score=46.01 Aligned_cols=87 Identities=18% Similarity=0.195 Sum_probs=52.6
Q ss_pred HHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCC--ccChH-HHHHHHHhCCCCCeeecCCCCCc
Q 021667 153 EAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGN--ELTNV-GLQAILDACPHLESLDLRQCFNV 229 (309)
Q Consensus 153 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~--~i~~~-~l~~l~~~~~~L~~L~l~~c~~~ 229 (309)
..+....|.+..++++++.+. .-+.+..++...|+|+.|+|++| .+... .+.++ ....|++|.+.|++..
T Consensus 211 ~~~~~n~p~i~sl~lsnNrL~-----~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 211 KHIEENFPEILSLSLSNNRLY-----HLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLC 283 (585)
T ss_pred HHhhcCCcceeeeecccchhh-----chhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccc
Confidence 444556677777777754442 24556667777788888888887 33322 22222 2344778888887777
Q ss_pred Cc-------hhHHHHHhHhccCcee
Q 021667 230 NL-------VGKLGKICAERIRDLR 247 (309)
Q Consensus 230 ~~-------~~~l~~~~~~~L~~L~ 247 (309)
+. ..++...+| +|..|+
T Consensus 284 ~tf~~~s~yv~~i~~~FP-KL~~LD 307 (585)
T KOG3763|consen 284 TTFSDRSEYVSAIRELFP-KLLRLD 307 (585)
T ss_pred cchhhhHHHHHHHHHhcc-hheeec
Confidence 65 234555666 665553
No 81
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.78 E-value=0.089 Score=45.92 Aligned_cols=112 Identities=21% Similarity=0.223 Sum_probs=65.7
Q ss_pred hcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHH
Q 021667 106 NRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKA 185 (309)
Q Consensus 106 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 185 (309)
...++|..|++++. -+.+ ++.-...+-.|+.|+++.|.|..- .....-...++.+-.+.+... ......
T Consensus 432 ~~l~kLt~L~L~NN-~Ln~--LP~e~~~lv~Lq~LnlS~NrFr~l--P~~~y~lq~lEtllas~nqi~------~vd~~~ 500 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNN-LLND--LPEEMGSLVRLQTLNLSFNRFRML--PECLYELQTLETLLASNNQIG------SVDPSG 500 (565)
T ss_pred Hhhhcceeeecccc-hhhh--cchhhhhhhhhheecccccccccc--hHHHhhHHHHHHHHhcccccc------ccChHH
Confidence 34788899999864 2221 121122355699999999955421 111111122333333322222 111223
Q ss_pred HHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCc
Q 021667 186 IAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNL 231 (309)
Q Consensus 186 l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~ 231 (309)
+. .+.+|.+|++.+|.+. .+..++.+|.+|++|.+.|++.-..
T Consensus 501 l~-nm~nL~tLDL~nNdlq--~IPp~LgnmtnL~hLeL~gNpfr~P 543 (565)
T KOG0472|consen 501 LK-NMRNLTTLDLQNNDLQ--QIPPILGNMTNLRHLELDGNPFRQP 543 (565)
T ss_pred hh-hhhhcceeccCCCchh--hCChhhccccceeEEEecCCccCCC
Confidence 44 7889999999998553 4556677899999999999886654
No 82
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=92.74 E-value=0.037 Score=49.70 Aligned_cols=131 Identities=22% Similarity=0.227 Sum_probs=68.2
Q ss_pred hcCCCccEEEeCCCCCCC-HHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHH
Q 021667 106 NRSRNLRNLRLVSCYNIS-DQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAK 184 (309)
Q Consensus 106 ~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 184 (309)
..+++|++|++++. .++ ..++. .++.|+.|++.+|.+.+. ..+ ..+++|+.++++++.+... ...
T Consensus 115 ~~~~~L~~L~ls~N-~I~~i~~l~----~l~~L~~L~l~~N~i~~~--~~~-~~l~~L~~l~l~~n~i~~i----e~~-- 180 (414)
T KOG0531|consen 115 SSLVNLQVLDLSFN-KITKLEGLS----TLTLLKELNLSGNLISDI--SGL-ESLKSLKLLDLSYNRIVDI----END-- 180 (414)
T ss_pred hhhhcchheecccc-ccccccchh----hccchhhheeccCcchhc--cCC-ccchhhhcccCCcchhhhh----hhh--
Confidence 34788888888854 444 33333 345588888888866542 111 2266777777776443311 000
Q ss_pred HHHhcCCCCcEEEecCCccChHH-HHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCch
Q 021667 185 AIAENMHGLRHLQLFGNELTNVG-LQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDY 256 (309)
Q Consensus 185 ~l~~~~~~L~~L~l~~~~i~~~~-l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~ 256 (309)
. ...+.+|+.+.+.++.+.... +... ..+..+++..+......+.-..... +|+.+.++++++...
T Consensus 181 ~-~~~~~~l~~l~l~~n~i~~i~~~~~~----~~l~~~~l~~n~i~~~~~l~~~~~~-~L~~l~l~~n~i~~~ 247 (414)
T KOG0531|consen 181 E-LSELISLEELDLGGNSIREIEGLDLL----KKLVLLSLLDNKISKLEGLNELVML-HLRELYLSGNRISRS 247 (414)
T ss_pred h-hhhccchHHHhccCCchhcccchHHH----HHHHHhhcccccceeccCcccchhH-HHHHHhcccCccccc
Confidence 1 247788888888888554322 2211 1122223333222211110001111 478888888887654
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=92.73 E-value=0.22 Score=45.22 Aligned_cols=93 Identities=19% Similarity=0.114 Sum_probs=45.7
Q ss_pred HHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCC--CCCHH-HHHHHHhcCCCCcEEEeccCCCCCCCcc
Q 021667 102 QYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYC--SLSQE-ALEAVGSLCPLLRSFKLNNRGHRCPKIE 178 (309)
Q Consensus 102 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~--~~~~~-~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 178 (309)
..+....+.+.+++|.+..-..-..+..+.+..|+|+.|+|++| .+... .+.. -....|++|-+.++.+......
T Consensus 211 ~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K--~k~l~Leel~l~GNPlc~tf~~ 288 (585)
T KOG3763|consen 211 KHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDK--LKGLPLEELVLEGNPLCTTFSD 288 (585)
T ss_pred HHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhh--hcCCCHHHeeecCCccccchhh
Confidence 33444456666666665533344555556666667777777666 22211 1111 1234566666665443222112
Q ss_pred cchhHHHHHhcCCCCcEE
Q 021667 179 CDDDAKAIAENMHGLRHL 196 (309)
Q Consensus 179 ~~~~~~~l~~~~~~L~~L 196 (309)
....+.++...+|+|..|
T Consensus 289 ~s~yv~~i~~~FPKL~~L 306 (585)
T KOG3763|consen 289 RSEYVSAIRELFPKLLRL 306 (585)
T ss_pred hHHHHHHHHHhcchheee
Confidence 233344555566655544
No 84
>PRK15386 type III secretion protein GogB; Provisional
Probab=91.81 E-value=0.42 Score=42.47 Aligned_cols=32 Identities=25% Similarity=0.438 Sum_probs=22.5
Q ss_pred CCCCeeecCCCCCcCchhHHHHHhHhccCceecCCC
Q 021667 216 PHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPND 251 (309)
Q Consensus 216 ~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~ 251 (309)
++|++|.+++|..+... ...|.+|+.|.++.+
T Consensus 156 sSLk~L~Is~c~~i~LP----~~LP~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNIILP----EKLPESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcccCc----ccccccCcEEEeccc
Confidence 46999999998866422 223448888888765
No 85
>PRK15386 type III secretion protein GogB; Provisional
Probab=91.38 E-value=0.097 Score=46.34 Aligned_cols=31 Identities=23% Similarity=0.231 Sum_probs=17.7
Q ss_pred CCCcEEEecCCccChHHHHHHHHhC-CCCCeeecCCC
Q 021667 191 HGLRHLQLFGNELTNVGLQAILDAC-PHLESLDLRQC 226 (309)
Q Consensus 191 ~~L~~L~l~~~~i~~~~l~~l~~~~-~~L~~L~l~~c 226 (309)
++|++|.+.+|.... +.... .+|+.|.++.+
T Consensus 156 sSLk~L~Is~c~~i~-----LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNII-----LPEKLPESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCccc-----CcccccccCcEEEeccc
Confidence 468888888774221 11112 35788877654
No 86
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=87.91 E-value=0.4 Score=33.32 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=22.5
Q ss_pred CCCCCCcHHHHHHHhccCChhhhh
Q 021667 11 CDWTQLPADVTSTILSKIGAIDVL 34 (309)
Q Consensus 11 ~~~~~LP~eiL~~If~~L~~~d~~ 34 (309)
+.|..||.|+-..|+++|+..|+.
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~ 93 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLK 93 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHH
Confidence 789999999999999999999973
No 87
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=87.84 E-value=0.51 Score=21.08 Aligned_cols=11 Identities=45% Similarity=0.591 Sum_probs=4.3
Q ss_pred CCcEEEecCCc
Q 021667 192 GLRHLQLFGNE 202 (309)
Q Consensus 192 ~L~~L~l~~~~ 202 (309)
+|+.|++++|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 44444444443
No 88
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=87.21 E-value=0.5 Score=23.87 Aligned_cols=25 Identities=28% Similarity=0.587 Sum_probs=17.3
Q ss_pred CCcEEEecCCccChH-HHHHHHHhCC
Q 021667 192 GLRHLQLFGNELTNV-GLQAILDACP 216 (309)
Q Consensus 192 ~L~~L~l~~~~i~~~-~l~~l~~~~~ 216 (309)
+|++|.|....+.++ .+..++.+||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 477788887755444 6777777776
No 89
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=87.14 E-value=2 Score=36.70 Aligned_cols=99 Identities=19% Similarity=0.226 Sum_probs=65.7
Q ss_pred HHHHHHHHhcCCCcCEEEecCC-CCCHHHHHHHHhcCC---CCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEec
Q 021667 124 DQGFCEAIKGFPLLEELELSYC-SLSQEALEAVGSLCP---LLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLF 199 (309)
Q Consensus 124 ~~~~~~~~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~---~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~ 199 (309)
+..+..+-..-+.|+++.|... .++...+..+...+. ..+.+.+.+.....+ ....+..+.+.++.|++|++.
T Consensus 187 e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~---vA~a~a~ml~~n~sl~slnve 263 (353)
T KOG3735|consen 187 ESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDP---VAFAIAEMLKENKSLTSLNVE 263 (353)
T ss_pred HHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCch---hHHHHHHHHhhcchhhheecc
Confidence 3445555555589999999888 888887777765553 355555554222211 122333445688999999999
Q ss_pred CCccChHHHHHHHHhCCC---CCeeecCC
Q 021667 200 GNELTNVGLQAILDACPH---LESLDLRQ 225 (309)
Q Consensus 200 ~~~i~~~~l~~l~~~~~~---L~~L~l~~ 225 (309)
+|.||..++.+++..+.. |..+.+.+
T Consensus 264 snFItg~gi~a~~~al~~n~tl~el~~dn 292 (353)
T KOG3735|consen 264 SNFITGLGIMALLRALQSNKSLTELKNDN 292 (353)
T ss_pred ccccccHHHHHHHHHHhccchhhHhhhhh
Confidence 999999999998877654 55554433
No 90
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=80.46 E-value=0.96 Score=33.66 Aligned_cols=86 Identities=13% Similarity=0.070 Sum_probs=55.5
Q ss_pred CCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhH
Q 021667 161 LLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICA 240 (309)
Q Consensus 161 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~ 240 (309)
.+..++++.|.+. .....+..+. ....|+..+|++|.+.+- -..+....|.++.|++.++.......+ ....+
T Consensus 28 E~h~ldLssc~lm----~i~davy~l~-~~~el~~i~ls~N~fk~f-p~kft~kf~t~t~lNl~~neisdvPeE-~Aam~ 100 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM----YIADAVYMLS-KGYELTKISLSDNGFKKF-PKKFTIKFPTATTLNLANNEISDVPEE-LAAMP 100 (177)
T ss_pred Hhhhcccccchhh----HHHHHHHHHh-CCceEEEEecccchhhhC-CHHHhhccchhhhhhcchhhhhhchHH-HhhhH
Confidence 4555666654332 1233344444 667788889999865421 223444567899999988765554555 55567
Q ss_pred hccCceecCCCCCC
Q 021667 241 ERIRDLRHPNDSTH 254 (309)
Q Consensus 241 ~~L~~L~l~~~~~~ 254 (309)
.|+.|+++.|++.
T Consensus 101 -aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 101 -ALRSLNLRFNPLN 113 (177)
T ss_pred -HhhhcccccCccc
Confidence 8999999999974
No 91
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=77.38 E-value=1.5 Score=20.91 Aligned_cols=12 Identities=58% Similarity=0.725 Sum_probs=5.8
Q ss_pred CcEEEecCCccC
Q 021667 193 LRHLQLFGNELT 204 (309)
Q Consensus 193 L~~L~l~~~~i~ 204 (309)
|++|++++|.++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 455555555443
No 92
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=75.57 E-value=2.2 Score=36.55 Aligned_cols=50 Identities=22% Similarity=0.464 Sum_probs=37.8
Q ss_pred CCCCCCcHHHHHHHhccCCh-------hhhhhhhhhhcHHHHHhcc----CCCCCceeecC
Q 021667 11 CDWTQLPADVTSTILSKIGA-------IDVLTSAQRVCSSWLRICH----DPAMWRNIDMH 60 (309)
Q Consensus 11 ~~~~~LP~eiL~~If~~L~~-------~d~~~~~~~Vcr~W~~~~~----~~~l~~~i~l~ 60 (309)
+.|++||+|.|..|...... +..++.++-||+.|+..+. .|..|..+++.
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~v~~~~~~~k~~~~ 103 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEIVAPPEPSSKLTFP 103 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccccccCCccccccchh
Confidence 58999999999999987643 2233689999999999775 45556665554
No 93
>PF12586 DUF3760: Protein of unknown function (DUF3760); InterPro: IPR022235 This domain family is found in eukaryotes, and is typically between 46 and 64 amino acids in length.
Probab=74.04 E-value=1.6 Score=25.49 Aligned_cols=40 Identities=20% Similarity=0.365 Sum_probs=31.1
Q ss_pred HHHHHHHhccCChhhhhhhhhhhcHHHHHhccCCCCCceeec
Q 021667 18 ADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDM 59 (309)
Q Consensus 18 ~eiL~~If~~L~~~d~~~~~~~Vcr~W~~~~~~~~l~~~i~l 59 (309)
.++...||.+|+...-+ .+..+||...+... |.+|+++.+
T Consensus 6 ~~v~~lI~~~l~~i~P~-t~l~lSr~~yk~ii-P~iYr~v~~ 45 (46)
T PF12586_consen 6 GPVHDLILDELSRIRPL-TYLRLSRYHYKRII-PIIYRHVTI 45 (46)
T ss_pred HhHHHHHHHHHHhcCCh-hheeeeHHHhhhhh-hhhhheeec
Confidence 57888888887766664 67889999988777 888888764
No 94
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=71.59 E-value=10 Score=32.58 Aligned_cols=82 Identities=15% Similarity=0.153 Sum_probs=57.1
Q ss_pred chhHHHHHhcCCCCcEEEecCC-ccChHHHHHHHHhCCC---CCeeecCCCCCcCc----hhHHHHHhHhccCceecCCC
Q 021667 180 DDDAKAIAENMHGLRHLQLFGN-ELTNVGLQAILDACPH---LESLDLRQCFNVNL----VGKLGKICAERIRDLRHPND 251 (309)
Q Consensus 180 ~~~~~~l~~~~~~L~~L~l~~~-~i~~~~l~~l~~~~~~---L~~L~l~~c~~~~~----~~~l~~~~~~~L~~L~l~~~ 251 (309)
+..+..+..+-|+|+..+|.++ .|....+..+...+.+ .+...+.+-...+. +......++ .|++|++.+|
T Consensus 187 e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~-sl~slnvesn 265 (353)
T KOG3735|consen 187 ESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENK-SLTSLNVESN 265 (353)
T ss_pred HHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcc-hhhheecccc
Confidence 5556667777889999999988 8888777777766543 55555554443333 223334455 8999999999
Q ss_pred CCCchhhhhhh
Q 021667 252 STHDYEFGADF 262 (309)
Q Consensus 252 ~~~d~~~~~~~ 262 (309)
.||..|+.+..
T Consensus 266 FItg~gi~a~~ 276 (353)
T KOG3735|consen 266 FITGLGIMALL 276 (353)
T ss_pred ccccHHHHHHH
Confidence 99999988765
No 95
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=64.98 E-value=5.9 Score=19.54 Aligned_cols=14 Identities=43% Similarity=0.617 Sum_probs=7.7
Q ss_pred CCCcEEEecCCccC
Q 021667 191 HGLRHLQLFGNELT 204 (309)
Q Consensus 191 ~~L~~L~l~~~~i~ 204 (309)
++|++|+|.+|.++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45566666665443
No 96
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=64.98 E-value=5.9 Score=19.54 Aligned_cols=14 Identities=43% Similarity=0.617 Sum_probs=7.7
Q ss_pred CCCcEEEecCCccC
Q 021667 191 HGLRHLQLFGNELT 204 (309)
Q Consensus 191 ~~L~~L~l~~~~i~ 204 (309)
++|++|+|.+|.++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45566666665443
No 97
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=63.92 E-value=3.2 Score=34.30 Aligned_cols=47 Identities=15% Similarity=0.388 Sum_probs=35.7
Q ss_pred CCCCCCCcHHHHHHHhccCCh-hhhhhhhhhhcHHHHHhccCCCCCcee
Q 021667 10 SCDWTQLPADVTSTILSKIGA-IDVLTSAQRVCSSWLRICHDPAMWRNI 57 (309)
Q Consensus 10 ~~~~~~LP~eiL~~If~~L~~-~d~~~~~~~Vcr~W~~~~~~~~l~~~i 57 (309)
...+.+||.|++..|+..++. +|++ .+++|-.....+..+..+|+++
T Consensus 199 ~ltl~dLP~e~vl~Il~rlsDh~dL~-s~aqa~etl~~l~~e~~iWkkL 246 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLRLSDHRDLE-SLAQAWETLAKLSEERRIWKKL 246 (332)
T ss_pred CCCcccchHHHHHHHHHHccCcchHH-HHHHhhHHHHHHHHHHHHHHHH
Confidence 457889999999999988864 6664 8888876666666666677655
No 98
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=61.09 E-value=3.1 Score=38.44 Aligned_cols=36 Identities=17% Similarity=0.234 Sum_probs=16.9
Q ss_pred CCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCc
Q 021667 218 LESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHD 255 (309)
Q Consensus 218 L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d 255 (309)
|..||++ |+.+..+..-+.... +|+.|-|.+|+++-
T Consensus 213 Li~lDfS-cNkis~iPv~fr~m~-~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 213 LIRLDFS-CNKISYLPVDFRKMR-HLQVLQLENNPLQS 248 (722)
T ss_pred eeeeecc-cCceeecchhhhhhh-hheeeeeccCCCCC
Confidence 5555554 333333333333334 56666666665543
No 99
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=54.92 E-value=3 Score=30.19 Aligned_cols=99 Identities=17% Similarity=0.353 Sum_probs=39.2
Q ss_pred hcCCCcCEEEecCC--CCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCC--ccChHH
Q 021667 132 KGFPLLEELELSYC--SLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGN--ELTNVG 207 (309)
Q Consensus 132 ~~~~~L~~L~L~~~--~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~--~i~~~~ 207 (309)
..|.+|+.+.+... .+... ...+|++|+.+.+... +. .-.-.++. .+++|+.+.+.+. .+.+.
T Consensus 9 ~~~~~l~~i~~~~~~~~I~~~----~F~~~~~l~~i~~~~~-~~------~i~~~~F~-~~~~l~~i~~~~~~~~i~~~- 75 (129)
T PF13306_consen 9 YNCSNLESITFPNTIKKIGEN----AFSNCTSLKSINFPNN-LT------SIGDNAFS-NCKSLESITFPNNLKSIGDN- 75 (129)
T ss_dssp TT-TT--EEEETST--EE-TT----TTTT-TT-SEEEESST-TS------CE-TTTTT-T-TT-EEEEETSTT-EE-TT-
T ss_pred hCCCCCCEEEECCCeeEeChh----hccccccccccccccc-cc------ccceeeee-cccccccccccccccccccc-
Confidence 45667777777643 22221 1244667777777541 11 00111122 5666777777553 22221
Q ss_pred HHHHHHhCCCCCeeecCCCCCcCchh-HHHHHhHhccCceecCC
Q 021667 208 LQAILDACPHLESLDLRQCFNVNLVG-KLGKICAERIRDLRHPN 250 (309)
Q Consensus 208 l~~l~~~~~~L~~L~l~~c~~~~~~~-~l~~~~~~~L~~L~l~~ 250 (309)
.+..|++|+.+.+... +...+ .....+ +|+.+.+..
T Consensus 76 ---~F~~~~~l~~i~~~~~--~~~i~~~~f~~~--~l~~i~~~~ 112 (129)
T PF13306_consen 76 ---AFSNCTNLKNIDIPSN--ITEIGSSSFSNC--NLKEINIPS 112 (129)
T ss_dssp ---TTTT-TTECEEEETTT---BEEHTTTTTT---T--EEE-TT
T ss_pred ---cccccccccccccCcc--ccEEchhhhcCC--CceEEEECC
Confidence 2335677777777432 22211 222222 366666654
No 100
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=51.87 E-value=14 Score=18.64 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=8.5
Q ss_pred CCCcEEEecCCccC
Q 021667 191 HGLRHLQLFGNELT 204 (309)
Q Consensus 191 ~~L~~L~l~~~~i~ 204 (309)
.+|+.|.+++|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666553
No 101
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=39.91 E-value=2.3 Score=39.27 Aligned_cols=107 Identities=21% Similarity=0.188 Sum_probs=65.0
Q ss_pred cCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHH
Q 021667 133 GFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAIL 212 (309)
Q Consensus 133 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~ 212 (309)
.+..|+.|+|+.|++..-.. .+ -.| -|+.|-++++.++.- ...+. ..++|..|+.+.|.+.. +..=+
T Consensus 119 ~L~~lt~l~ls~NqlS~lp~-~l-C~l-pLkvli~sNNkl~~l-------p~~ig-~~~tl~~ld~s~nei~s--lpsql 185 (722)
T KOG0532|consen 119 NLEALTFLDLSSNQLSHLPD-GL-CDL-PLKVLIVSNNKLTSL-------PEEIG-LLPTLAHLDVSKNEIQS--LPSQL 185 (722)
T ss_pred hhhHHHHhhhccchhhcCCh-hh-hcC-cceeEEEecCccccC-------Ccccc-cchhHHHhhhhhhhhhh--chHHh
Confidence 35566777777774432111 11 113 378888876544322 22333 56788888888885532 22222
Q ss_pred HhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCc
Q 021667 213 DACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHD 255 (309)
Q Consensus 213 ~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d 255 (309)
.....|+.|.++.++..+-...+. ..| |.+|+++.|.++-
T Consensus 186 ~~l~slr~l~vrRn~l~~lp~El~-~Lp--Li~lDfScNkis~ 225 (722)
T KOG0532|consen 186 GYLTSLRDLNVRRNHLEDLPEELC-SLP--LIRLDFSCNKISY 225 (722)
T ss_pred hhHHHHHHHHHhhhhhhhCCHHHh-CCc--eeeeecccCceee
Confidence 245568888888877776666666 455 9999999998753
No 102
>PF15137 DUF4571: Domain of unknown function (DUF4571)
Probab=33.67 E-value=58 Score=25.63 Aligned_cols=46 Identities=24% Similarity=0.344 Sum_probs=33.3
Q ss_pred cChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCC
Q 021667 203 LTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPN 250 (309)
Q Consensus 203 i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~ 250 (309)
++|..+...+-+..-.+.|.|+-|...+-..+....|. ||+|++..
T Consensus 84 FTd~s~Lg~LLNfTlV~DLKLSlCgt~tlpteYLaI~G--LrrLrI~t 129 (219)
T PF15137_consen 84 FTDTSALGLLLNFTLVQDLKLSLCGTNTLPTEYLAICG--LRRLRINT 129 (219)
T ss_pred EecHHHHHHHHhhHhHhhhhhhhcCCCCCcHHHHHhhh--hheeEeec
Confidence 45555544444666788888888988877777777777 88888865
No 103
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=28.16 E-value=37 Score=17.15 Aligned_cols=14 Identities=14% Similarity=0.377 Sum_probs=11.0
Q ss_pred ccCceecCCCCCCc
Q 021667 242 RIRDLRHPNDSTHD 255 (309)
Q Consensus 242 ~L~~L~l~~~~~~d 255 (309)
+|+.|++++|.++.
T Consensus 3 ~L~~L~vs~N~Lt~ 16 (26)
T smart00364 3 SLKELNVSNNQLTS 16 (26)
T ss_pred ccceeecCCCcccc
Confidence 78888888888753
No 104
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=27.85 E-value=17 Score=31.20 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=39.6
Q ss_pred CCCCCcHHHHHHHhccCChhhhhhhhhhhcHHHHHhccCCCCCceee
Q 021667 12 DWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNID 58 (309)
Q Consensus 12 ~~~~LP~eiL~~If~~L~~~d~~~~~~~Vcr~W~~~~~~~~l~~~i~ 58 (309)
....+|..++..|.+++..+++. +++.|+++...+...-.+|.+..
T Consensus 7 ~le~~~~~~l~~vls~~~~~~~~-~~a~vs~rLk~~~s~~~lw~r~c 52 (386)
T KOG4408|consen 7 GLEWLPRDPLHLVLSFLLYRDLI-NCAYVSRRLKELGSHLPLWNRPC 52 (386)
T ss_pred chhhcccccceeeecccchhhhh-cceeechHHhhhhhccccccccc
Confidence 45678999999999999999995 99999999999988667787554
No 105
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=25.57 E-value=39 Score=24.29 Aligned_cols=11 Identities=18% Similarity=0.724 Sum_probs=5.4
Q ss_pred HHHHHHhCCCC
Q 021667 208 LQAILDACPHL 218 (309)
Q Consensus 208 l~~l~~~~~~L 218 (309)
+..++.+|..|
T Consensus 78 ~~~mF~~~~~l 88 (120)
T PF03382_consen 78 MSNMFSGCSSL 88 (120)
T ss_pred HHHHHhhhHHc
Confidence 34444455555
No 106
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=25.47 E-value=97 Score=22.55 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=16.1
Q ss_pred CCCeeecCCCCCcCchhHHHHHhHhccCceecCC
Q 021667 217 HLESLDLRQCFNVNLVGKLGKICAERIRDLRHPN 250 (309)
Q Consensus 217 ~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~ 250 (309)
+=+.++|.+-+...++-.+...|| +|+.+.++.
T Consensus 18 nE~~VHlAFRPSN~Dif~Lv~~CP-~lk~iqiP~ 50 (131)
T PF08004_consen 18 NEEIVHLAFRPSNKDIFSLVERCP-NLKAIQIPP 50 (131)
T ss_pred CceEEEEEecCcchHHHHHHHhCC-CCeEEeCCh
Confidence 333444444444444445555555 555555544
Done!