Query 021667
Match_columns 309
No_of_seqs 253 out of 2378
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 07:31:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021667.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021667hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ast_B S-phase kinase-associat 100.0 5.4E-30 1.9E-34 221.5 24.5 259 8-286 4-286 (336)
2 2p1m_B Transport inhibitor res 99.9 7.6E-25 2.6E-29 203.2 16.1 251 10-280 3-324 (594)
3 3ogk_B Coronatine-insensitive 99.9 1.9E-22 6.4E-27 187.1 17.6 197 13-226 13-230 (592)
4 3ogk_B Coronatine-insensitive 99.7 1.7E-16 5.7E-21 147.1 17.9 196 82-285 315-527 (592)
5 2p1m_B Transport inhibitor res 99.7 9.2E-16 3.1E-20 142.1 18.4 178 83-262 312-527 (594)
6 2ast_B S-phase kinase-associat 99.7 9E-16 3.1E-20 132.2 16.2 165 107-285 91-262 (336)
7 1z7x_W Ribonuclease inhibitor; 99.6 2.6E-14 8.7E-19 128.4 17.4 187 86-281 86-295 (461)
8 2ca6_A RAN GTPase-activating p 99.6 2.5E-13 8.5E-18 119.2 20.7 144 109-257 159-319 (386)
9 1z7x_W Ribonuclease inhibitor; 99.6 4.9E-14 1.7E-18 126.5 16.1 190 84-282 27-239 (461)
10 2ca6_A RAN GTPase-activating p 99.5 3.3E-13 1.1E-17 118.4 19.0 222 52-283 60-316 (386)
11 3un9_A NLR family member X1; l 99.5 1.1E-13 3.9E-18 120.5 15.7 171 84-262 71-260 (372)
12 3goz_A Leucine-rich repeat-con 99.5 5.1E-13 1.8E-17 116.2 15.4 17 242-258 226-242 (362)
13 1fs1_A SKP2 F-BOX, cyclin A/CD 99.5 1.9E-14 6.4E-19 88.3 3.6 50 8-58 4-53 (53)
14 3un9_A NLR family member X1; l 99.5 1.3E-13 4.4E-18 120.2 9.8 166 108-282 71-251 (372)
15 3goz_A Leucine-rich repeat-con 99.4 1.7E-12 5.9E-17 112.9 13.3 196 84-283 21-238 (362)
16 3e4g_A ATP synthase subunit S, 99.4 8.1E-13 2.8E-17 101.4 6.9 93 110-233 62-156 (176)
17 3e4g_A ATP synthase subunit S, 99.3 5.6E-12 1.9E-16 96.7 8.2 104 84-194 60-170 (176)
18 4ezg_A Putative uncharacterize 99.2 5.7E-12 2E-16 99.9 4.5 149 108-280 43-191 (197)
19 2ra8_A Uncharacterized protein 99.2 8.9E-11 3.1E-15 101.5 10.7 171 84-262 138-328 (362)
20 1io0_A Tropomodulin; LRR prote 99.2 2.4E-10 8.1E-15 89.5 11.4 123 99-227 26-162 (185)
21 1io0_A Tropomodulin; LRR prote 99.2 8.6E-10 2.9E-14 86.3 14.2 127 124-258 25-168 (185)
22 2je0_A Acidic leucine-rich nuc 99.2 2.2E-11 7.4E-16 91.9 4.5 130 108-249 16-148 (149)
23 4fmz_A Internalin; leucine ric 99.1 1.5E-10 5E-15 99.9 9.9 169 84-282 154-323 (347)
24 1ozn_A Reticulon 4 receptor; N 99.1 3E-12 1E-16 107.5 -1.8 185 84-285 55-240 (285)
25 4ezg_A Putative uncharacterize 99.1 5.7E-11 1.9E-15 94.1 5.4 150 85-255 44-195 (197)
26 4fcg_A Uncharacterized protein 99.1 3.4E-12 1.2E-16 109.5 -2.1 89 189-285 204-292 (328)
27 2ell_A Acidic leucine-rich nuc 99.1 9.5E-12 3.3E-16 95.9 0.3 133 109-253 24-159 (168)
28 4fmz_A Internalin; leucine ric 99.1 4.3E-10 1.5E-14 97.0 10.3 169 84-282 131-299 (347)
29 1h6u_A Internalin H; cell adhe 99.1 2.5E-10 8.7E-15 96.9 8.0 167 84-282 62-229 (308)
30 1ozn_A Reticulon 4 receptor; N 99.0 7.9E-12 2.7E-16 104.9 -2.5 182 84-283 31-214 (285)
31 2o6q_A Variable lymphocyte rec 99.0 1.1E-11 3.6E-16 103.4 -1.8 63 189-253 155-217 (270)
32 3rfs_A Internalin B, repeat mo 99.0 4.8E-11 1.6E-15 99.5 1.8 135 107-253 83-217 (272)
33 2je0_A Acidic leucine-rich nuc 99.0 7.4E-11 2.5E-15 89.0 2.4 129 134-278 16-148 (149)
34 4glp_A Monocyte differentiatio 99.0 2.3E-10 7.7E-15 97.3 5.4 39 189-227 195-235 (310)
35 3v47_A TOLL-like receptor 5B a 99.0 1.2E-10 4E-15 104.3 3.6 88 84-173 78-167 (455)
36 4fcg_A Uncharacterized protein 99.0 1.9E-11 6.5E-16 104.8 -1.6 187 82-285 78-268 (328)
37 2ell_A Acidic leucine-rich nuc 99.0 6.7E-11 2.3E-15 91.1 1.3 134 133-282 22-159 (168)
38 1h6u_A Internalin H; cell adhe 99.0 1.2E-09 4.1E-14 92.7 8.8 167 85-283 41-208 (308)
39 1m9s_A Internalin B; cell inva 99.0 7.3E-10 2.5E-14 102.4 7.9 149 84-257 64-213 (605)
40 1h6t_A Internalin B; cell adhe 99.0 7.8E-10 2.7E-14 93.1 7.2 149 84-257 67-216 (291)
41 1wwl_A Monocyte differentiatio 99.0 3E-10 1E-14 96.6 4.5 182 84-282 120-308 (312)
42 2z66_A Variable lymphocyte rec 99.0 8.1E-12 2.8E-16 106.0 -5.4 66 189-256 173-238 (306)
43 3vq2_A TLR4, TOLL-like recepto 99.0 1.5E-11 5.1E-16 114.2 -4.6 139 107-256 374-512 (606)
44 1wwl_A Monocyte differentiatio 99.0 1.1E-10 3.7E-15 99.3 1.0 184 83-282 93-286 (312)
45 4glp_A Monocyte differentiatio 98.9 6.1E-11 2.1E-15 100.8 -0.8 180 84-282 116-306 (310)
46 2z63_A TOLL-like receptor 4, v 98.9 1.3E-11 4.4E-16 113.7 -5.7 140 133-285 394-533 (570)
47 2z80_A TOLL-like receptor 2, v 98.9 1.4E-10 4.9E-15 100.3 1.1 38 189-227 196-233 (353)
48 2z62_A TOLL-like receptor 4, v 98.9 4.3E-11 1.5E-15 99.9 -2.3 39 189-227 122-160 (276)
49 2z81_A CD282 antigen, TOLL-lik 98.9 5.4E-09 1.9E-13 95.7 11.3 82 191-285 431-512 (549)
50 3rfs_A Internalin B, repeat mo 98.9 4.4E-10 1.5E-14 93.6 3.6 180 84-285 40-220 (272)
51 3t6q_A CD180 antigen; protein- 98.9 4.2E-11 1.4E-15 111.1 -3.0 86 189-281 423-511 (606)
52 1o6v_A Internalin A; bacterial 98.9 3.9E-09 1.3E-13 94.8 9.6 82 189-283 307-388 (466)
53 2z66_A Variable lymphocyte rec 98.9 3.3E-11 1.1E-15 102.2 -4.3 182 84-282 51-235 (306)
54 3m19_A Variable lymphocyte rec 98.9 1.6E-10 5.3E-15 95.2 -0.3 159 84-255 34-193 (251)
55 2id5_A Lingo-1, leucine rich r 98.9 4.9E-11 1.7E-15 107.5 -3.6 133 108-252 79-211 (477)
56 3zyj_A Leucine-rich repeat-con 98.9 8.3E-11 2.8E-15 104.9 -2.4 82 84-169 87-169 (440)
57 1h6t_A Internalin B; cell adhe 98.9 3.4E-09 1.2E-13 89.1 7.6 169 84-284 45-214 (291)
58 1xeu_A Internalin C; cellular 98.9 2.2E-09 7.5E-14 88.9 6.2 127 107-256 61-187 (263)
59 3v47_A TOLL-like receptor 5B a 98.9 6.6E-10 2.3E-14 99.4 3.1 136 135-285 275-410 (455)
60 3zyi_A Leucine-rich repeat-con 98.9 1.2E-10 4.1E-15 104.3 -1.8 63 189-255 194-256 (452)
61 1o6v_A Internalin A; bacterial 98.9 6.7E-09 2.3E-13 93.2 9.5 167 84-282 198-365 (466)
62 2id5_A Lingo-1, leucine rich r 98.9 1.5E-10 5.2E-15 104.2 -1.6 181 84-282 79-284 (477)
63 3zyi_A Leucine-rich repeat-con 98.8 2.1E-10 7.3E-15 102.6 -0.8 109 158-282 194-302 (452)
64 2o6q_A Variable lymphocyte rec 98.8 2E-10 6.9E-15 95.6 -0.9 184 84-285 36-220 (270)
65 3t6q_A CD180 antigen; protein- 98.8 1.2E-10 4E-15 108.2 -3.0 183 84-282 349-535 (606)
66 3m19_A Variable lymphocyte rec 98.8 1.9E-10 6.6E-15 94.6 -1.6 114 133-256 57-170 (251)
67 1a9n_A U2A', U2A'; complex (nu 98.8 1E-09 3.6E-14 85.1 2.5 135 108-256 18-155 (176)
68 3zyj_A Leucine-rich repeat-con 98.8 2.1E-10 7.1E-15 102.4 -1.8 159 84-257 111-271 (440)
69 2z7x_B TOLL-like receptor 1, v 98.8 2.9E-09 9.8E-14 96.9 5.3 160 107-285 322-483 (520)
70 1p9a_G Platelet glycoprotein I 98.8 2.3E-10 7.8E-15 96.3 -1.9 161 84-261 54-216 (290)
71 1xku_A Decorin; proteoglycan, 98.8 4.5E-10 1.5E-14 96.2 -0.5 84 191-282 192-275 (330)
72 3o53_A Protein LRIM1, AGAP0063 98.8 7.4E-10 2.5E-14 94.4 0.8 178 84-282 33-226 (317)
73 2z7x_B TOLL-like receptor 1, v 98.8 2.6E-09 9E-14 97.2 4.5 164 83-261 322-489 (520)
74 1xku_A Decorin; proteoglycan, 98.8 4.7E-10 1.6E-14 96.1 -0.9 140 108-262 144-284 (330)
75 3rgz_A Protein brassinosteroid 98.8 5.6E-10 1.9E-14 106.4 -0.4 155 108-282 125-281 (768)
76 1m9s_A Internalin B; cell inva 98.8 4.6E-09 1.6E-13 97.1 5.4 170 84-285 42-212 (605)
77 3o6n_A APL1; leucine-rich repe 98.7 1.6E-09 5.6E-14 94.9 1.3 15 133-147 163-177 (390)
78 3o53_A Protein LRIM1, AGAP0063 98.7 2.1E-09 7.1E-14 91.6 1.9 169 98-282 23-203 (317)
79 1ogq_A PGIP-2, polygalacturona 98.7 8.5E-11 2.9E-15 100.1 -6.9 85 84-172 75-161 (313)
80 1ogq_A PGIP-2, polygalacturona 98.7 6.3E-11 2.2E-15 100.8 -7.8 134 85-229 50-187 (313)
81 3oja_A Leucine-rich immune mol 98.7 1.1E-09 3.8E-14 98.8 -0.1 128 135-282 99-226 (487)
82 3l2o_B F-box only protein 4; s 98.7 7.9E-10 2.7E-14 90.5 -1.2 50 11-61 3-52 (312)
83 2z81_A CD282 antigen, TOLL-lik 98.7 8.4E-08 2.9E-12 87.8 11.7 172 85-282 310-485 (549)
84 3oja_B Anopheles plasmodium-re 98.7 2.8E-09 9.5E-14 98.8 1.5 13 242-254 302-314 (597)
85 3rgz_A Protein brassinosteroid 98.7 5.2E-10 1.8E-14 106.7 -3.6 158 84-253 199-380 (768)
86 3bz5_A Internalin-J, INLJ; leu 98.7 1.5E-08 5.1E-13 90.7 6.0 159 84-281 63-223 (457)
87 1pgv_A TMD-1, tropomodulin TMD 98.7 3.9E-07 1.3E-11 71.1 13.2 57 100-156 32-91 (197)
88 2z63_A TOLL-like receptor 4, v 98.7 1.5E-10 5E-15 106.6 -7.4 160 107-282 345-506 (570)
89 1pgv_A TMD-1, tropomodulin TMD 98.7 2.8E-07 9.6E-12 71.9 12.3 124 124-254 30-170 (197)
90 3j0a_A TOLL-like receptor 5; m 98.7 9.4E-10 3.2E-14 106.0 -2.2 164 84-256 23-189 (844)
91 1p9a_G Platelet glycoprotein I 98.7 4.7E-09 1.6E-13 88.2 1.9 178 84-283 30-208 (290)
92 2v70_A SLIT-2, SLIT homolog 2 98.7 1.1E-09 3.9E-14 88.2 -1.9 134 109-253 32-165 (220)
93 2z62_A TOLL-like receptor 4, v 98.7 1.2E-09 4E-14 91.2 -2.0 138 109-258 28-166 (276)
94 3e6j_A Variable lymphocyte rec 98.7 2.2E-09 7.7E-14 86.9 -0.3 133 109-254 40-172 (229)
95 2o6s_A Variable lymphocyte rec 98.7 2.3E-09 7.9E-14 85.5 -0.2 112 132-253 49-160 (208)
96 2o6s_A Variable lymphocyte rec 98.7 3.7E-09 1.3E-13 84.2 1.0 137 134-285 27-163 (208)
97 2z80_A TOLL-like receptor 2, v 98.7 1.5E-08 5.2E-13 87.5 4.9 161 84-254 123-314 (353)
98 2ra8_A Uncharacterized protein 98.7 2.1E-07 7.1E-12 80.4 11.7 157 83-252 170-341 (362)
99 1a9n_A U2A', U2A'; complex (nu 98.7 4.7E-09 1.6E-13 81.4 1.3 131 133-282 17-152 (176)
100 3vq2_A TLR4, TOLL-like recepto 98.7 9E-10 3.1E-14 102.2 -3.3 163 107-285 397-560 (606)
101 1xeu_A Internalin C; cellular 98.6 5.7E-09 1.9E-13 86.4 1.7 149 107-285 39-187 (263)
102 3oja_A Leucine-rich immune mol 98.6 1.4E-09 4.9E-14 98.1 -2.2 152 109-283 99-250 (487)
103 3oja_B Anopheles plasmodium-re 98.6 5.6E-09 1.9E-13 96.7 1.0 40 214-254 252-291 (597)
104 2v9t_B SLIT homolog 2 protein 98.6 3.3E-09 1.1E-13 85.4 -0.5 141 109-261 32-173 (220)
105 3a79_B TLR6, VLRB.59, TOLL-lik 98.6 7.5E-09 2.6E-13 95.2 1.5 134 107-254 351-486 (562)
106 1ziw_A TOLL-like receptor 3; i 98.6 7.7E-09 2.6E-13 97.2 1.3 184 84-282 48-260 (680)
107 2v70_A SLIT-2, SLIT homolog 2 98.6 4.2E-09 1.4E-13 84.8 -0.4 138 134-285 31-168 (220)
108 1ziw_A TOLL-like receptor 3; i 98.6 4.4E-09 1.5E-13 98.9 -0.5 161 85-258 25-188 (680)
109 3o6n_A APL1; leucine-rich repe 98.6 4.7E-09 1.6E-13 92.0 -0.3 156 84-255 44-200 (390)
110 2xot_A Amphoterin-induced prot 98.6 3.4E-09 1.2E-13 91.9 -1.3 166 84-260 38-209 (361)
111 3a79_B TLR6, VLRB.59, TOLL-lik 98.6 1.3E-08 4.3E-13 93.6 2.4 133 107-253 375-509 (562)
112 4eco_A Uncharacterized protein 98.6 3.8E-09 1.3E-13 98.6 -1.7 60 191-254 305-366 (636)
113 2v9t_B SLIT homolog 2 protein 98.6 3.5E-09 1.2E-13 85.2 -1.6 136 84-231 31-167 (220)
114 2e31_A FBS1, F-box only protei 98.6 1.5E-08 5.3E-13 83.8 2.1 49 10-58 48-96 (297)
115 2ft3_A Biglycan; proteoglycan, 98.6 3.2E-09 1.1E-13 90.9 -2.5 178 85-282 54-253 (332)
116 3bz5_A Internalin-J, INLJ; leu 98.5 7.4E-08 2.5E-12 86.2 6.1 161 84-282 84-245 (457)
117 4ecn_A Leucine-rich repeat pro 98.5 1.2E-08 4E-13 97.9 0.4 60 190-254 547-608 (876)
118 3e6j_A Variable lymphocyte rec 98.5 1.9E-08 6.7E-13 81.4 1.2 136 134-285 39-174 (229)
119 1ds9_A Outer arm dynein; leuci 98.5 3.2E-09 1.1E-13 84.0 -3.4 107 107-228 46-152 (198)
120 2xwt_C Thyrotropin receptor; s 98.5 1.8E-09 6.1E-14 88.1 -5.0 179 84-282 30-217 (239)
121 4ecn_A Leucine-rich repeat pro 98.5 1.9E-08 6.5E-13 96.5 0.9 159 107-282 489-656 (876)
122 4eco_A Uncharacterized protein 98.5 1.1E-08 3.7E-13 95.5 -1.4 154 108-282 432-599 (636)
123 3j0a_A TOLL-like receptor 5; m 98.5 7.7E-09 2.6E-13 99.6 -2.5 38 133-170 121-158 (844)
124 2ft3_A Biglycan; proteoglycan, 98.5 3.3E-09 1.1E-13 90.9 -4.8 163 84-262 101-285 (332)
125 2xot_A Amphoterin-induced prot 98.4 2.5E-08 8.6E-13 86.4 -0.4 144 108-262 38-184 (361)
126 4g8a_A TOLL-like receptor 4; l 98.4 4.9E-08 1.7E-12 90.7 -0.1 138 109-258 52-190 (635)
127 4g8a_A TOLL-like receptor 4; l 98.3 4.1E-08 1.4E-12 91.2 -0.9 159 85-254 52-214 (635)
128 2xwt_C Thyrotropin receptor; s 98.3 6.4E-09 2.2E-13 84.7 -5.8 153 109-281 31-190 (239)
129 1w8a_A SLIT protein; signaling 98.3 3.5E-08 1.2E-12 77.5 -1.8 63 189-253 76-138 (192)
130 3v7d_B Cell division control p 98.3 6.7E-08 2.3E-12 86.2 -0.6 51 10-61 12-63 (464)
131 2o6r_A Variable lymphocyte rec 98.3 9.9E-08 3.4E-12 73.8 0.2 110 135-254 28-137 (177)
132 2wfh_A SLIT homolog 2 protein 98.3 2.4E-07 8.3E-12 72.8 2.0 115 135-260 31-146 (193)
133 1dce_A Protein (RAB geranylger 98.3 4.4E-07 1.5E-11 83.3 3.7 107 135-256 441-548 (567)
134 2ovr_B FBW7, F-BOX/WD repeat p 98.2 3.9E-07 1.3E-11 80.9 2.7 49 9-58 15-63 (445)
135 1p22_A F-BOX/WD-repeat protein 98.2 1.3E-07 4.4E-12 83.9 -0.9 48 9-57 7-58 (435)
136 3g06_A SSPH2 (leucine-rich rep 98.1 4.7E-06 1.6E-10 77.2 7.4 40 215-256 260-299 (622)
137 2o6r_A Variable lymphocyte rec 98.1 1E-06 3.5E-11 68.0 1.8 132 136-285 8-139 (177)
138 3cvr_A Invasion plasmid antige 98.0 1.4E-06 4.8E-11 79.8 2.3 54 108-172 99-152 (571)
139 4b8c_D Glucose-repressible alc 98.0 1.6E-06 5.6E-11 81.9 2.7 110 107-231 222-331 (727)
140 3g06_A SSPH2 (leucine-rich rep 98.0 7.3E-06 2.5E-10 75.9 6.0 119 133-283 179-297 (622)
141 1ds9_A Outer arm dynein; leuci 98.0 5.7E-07 1.9E-11 70.9 -1.5 112 130-256 43-155 (198)
142 1dce_A Protein (RAB geranylger 98.0 4.7E-06 1.6E-10 76.5 4.2 156 107-283 370-546 (567)
143 4b8c_D Glucose-repressible alc 97.9 1.7E-06 6E-11 81.7 0.3 114 129-256 218-331 (727)
144 2wfh_A SLIT homolog 2 protein 97.9 4E-06 1.4E-10 65.8 2.3 129 138-285 13-141 (193)
145 3g39_A Variable lymphocyte rec 97.8 3.4E-06 1.2E-10 64.7 0.9 63 189-253 52-114 (170)
146 1w8a_A SLIT protein; signaling 97.8 2.2E-06 7.6E-11 67.1 -0.3 131 138-285 11-141 (192)
147 3sb4_A Hypothetical leucine ri 97.8 3.8E-06 1.3E-10 71.6 1.1 81 85-170 25-134 (329)
148 3cvr_A Invasion plasmid antige 97.8 8.3E-06 2.8E-10 74.7 2.8 150 84-262 99-251 (571)
149 3sb4_A Hypothetical leucine ri 97.7 8.3E-06 2.8E-10 69.5 1.5 74 184-262 219-294 (329)
150 3rw6_A Nuclear RNA export fact 97.7 7.8E-05 2.7E-09 61.2 7.2 87 130-223 165-258 (267)
151 1jl5_A Outer protein YOPM; leu 97.6 1.9E-05 6.3E-10 70.5 2.8 59 189-255 193-251 (454)
152 2r9u_A Variable lymphocyte rec 97.6 1.4E-05 4.9E-10 61.4 1.0 36 135-171 33-68 (174)
153 1jl5_A Outer protein YOPM; leu 97.6 5.7E-05 2E-09 67.3 5.1 57 191-255 215-271 (454)
154 3g39_A Variable lymphocyte rec 97.4 8.4E-05 2.9E-09 56.8 3.5 89 190-285 29-117 (170)
155 3rw6_A Nuclear RNA export fact 97.4 0.00022 7.6E-09 58.5 5.5 124 71-198 113-258 (267)
156 2r9u_A Variable lymphocyte rec 97.3 6.6E-05 2.2E-09 57.7 1.3 105 137-254 14-118 (174)
157 4ay9_X Follicle-stimulating ho 97.1 2.9E-06 1E-10 73.0 -8.4 63 191-256 154-217 (350)
158 4ay9_X Follicle-stimulating ho 97.0 4.3E-06 1.5E-10 72.0 -8.6 181 85-282 30-214 (350)
159 2ifg_A High affinity nerve gro 96.7 0.00027 9.1E-09 60.5 0.1 91 131-231 27-118 (347)
160 2ifg_A High affinity nerve gro 96.3 0.00078 2.7E-08 57.5 0.6 111 139-262 12-125 (347)
161 4fdw_A Leucine rich hypothetic 95.6 0.00083 2.8E-08 58.8 -2.4 70 189-262 269-343 (401)
162 4fdw_A Leucine rich hypothetic 95.5 0.0017 5.9E-08 56.7 -0.9 66 191-262 248-320 (401)
163 4gt6_A Cell surface protein; l 88.2 0.12 4.2E-06 44.6 0.8 56 189-251 309-367 (394)
164 4h09_A Hypothetical leucine ri 84.4 0.12 4.2E-06 44.3 -1.2 13 189-201 284-296 (379)
165 4fs7_A Uncharacterized protein 84.0 0.39 1.3E-05 41.5 1.8 77 189-278 295-374 (394)
166 4h09_A Hypothetical leucine ri 82.7 0.56 1.9E-05 40.1 2.3 79 189-278 261-341 (379)
167 4gt6_A Cell surface protein; l 82.6 0.42 1.4E-05 41.3 1.4 78 189-279 286-366 (394)
168 3rfe_A Platelet glycoprotein I 78.3 1.6 5.4E-05 31.1 3.1 36 192-228 32-67 (130)
169 4fs7_A Uncharacterized protein 72.6 0.52 1.8E-05 40.7 -1.0 80 157-251 294-376 (394)
170 3rfe_A Platelet glycoprotein I 63.4 2.9 9.8E-05 29.7 1.5 14 189-202 53-66 (130)
171 3e1k_B Lactose regulatory prot 50.2 1.4 4.9E-05 19.8 -1.2 11 299-309 10-20 (22)
172 3bts_E Regulatory protein GAL4 45.6 1.3 4.4E-05 20.9 -1.8 11 299-309 8-18 (26)
173 2lz0_A Uncharacterized protein 20.1 38 0.0013 22.5 1.2 33 189-225 18-52 (100)
No 1
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.97 E-value=5.4e-30 Score=221.52 Aligned_cols=259 Identities=19% Similarity=0.236 Sum_probs=200.5
Q ss_pred cCCCCCCCCcHHHHHHHhccCChhhhhhhhhhhcHHHHHhccCCCCCceeecCCCCCCcccchhHHHHHHHHHh------
Q 021667 8 QESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDMDHDLEKMCRHAVD------ 81 (309)
Q Consensus 8 ~~~~~~~~LP~eiL~~If~~L~~~d~~~~~~~Vcr~W~~~~~~~~l~~~i~l~~~~~~~~~~~~~~~~~~~~~~------ 81 (309)
.+...|++||+|+|.+||+||+..|+. +++.|||+|++++.+|.+|++++++... .....+..+....+.
T Consensus 4 ~~~~~~~~LP~eil~~If~~L~~~d~~-~~~~vc~~W~~~~~~~~~~~~l~l~~~~---~~~~~~~~~~~~~l~~L~l~~ 79 (336)
T 2ast_B 4 FPGVSWDSLPDELLLGIFSCLCLPELL-KVSGVCKRWYRLASDESLWQTLDLTGKN---LHPDVTGRLLSQGVIAFRCPR 79 (336)
T ss_dssp ---CCSSSSCHHHHHHHHTTSCHHHHH-HTTSSCHHHHHHHTCSTTSSEEECTTCB---CCHHHHHHHHHTTCSEEECTT
T ss_pred cccCChhhCCHHHHHHHHHhCCHHHHH-HHHHHHHHHHHHhcCchhheeecccccc---CCHHHHHhhhhccceEEEcCC
Confidence 456789999999999999999999995 9999999999999999999999998754 333333332211110
Q ss_pred ----------ccCCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCC-CCCH
Q 021667 82 ----------RSNGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYC-SLSQ 149 (309)
Q Consensus 82 ----------~~~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~ 149 (309)
...++++.++++. .+++..+..+...+++|++|++.++ .+++.....+. .+++|++|++++| .+++
T Consensus 80 n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~ 157 (336)
T 2ast_B 80 SFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLA-KNSNLVRLNLSGCSGFSE 157 (336)
T ss_dssp CEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHT-TCTTCSEEECTTCBSCCH
T ss_pred ccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHh-cCCCCCEEECCCCCCCCH
Confidence 1136788888854 5666667777788999999999977 67776666554 4999999999999 8998
Q ss_pred HHHHHHHhcCCCCcEEEeccC-CCCCCCcccchhHHHHHhcCC-CCcEEEecCC--ccChHHHHHHHHhCCCCCeeecCC
Q 021667 150 EALEAVGSLCPLLRSFKLNNR-GHRCPKIECDDDAKAIAENMH-GLRHLQLFGN--ELTNVGLQAILDACPHLESLDLRQ 225 (309)
Q Consensus 150 ~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~~~~-~L~~L~l~~~--~i~~~~l~~l~~~~~~L~~L~l~~ 225 (309)
.++..+...+++|++|++++| .+. +..+......++ +|++|++++| .+++.++..++..+++|++|++++
T Consensus 158 ~~l~~~~~~~~~L~~L~l~~~~~l~------~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~ 231 (336)
T 2ast_B 158 FALQTLLSSCSRLDELNLSWCFDFT------EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD 231 (336)
T ss_dssp HHHHHHHHHCTTCCEEECCCCTTCC------HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTT
T ss_pred HHHHHHHhcCCCCCEEcCCCCCCcC------hHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCC
Confidence 888888888999999999875 332 444555556899 9999999999 788888888888999999999999
Q ss_pred CCCcCc-hhHHHHHhHhccCceecCCCC-CCchhhhhhhhhhccCCcCCCCCCCCccccCCCC
Q 021667 226 CFNVNL-VGKLGKICAERIRDLRHPNDS-THDYEFGADFQDFCWSSVEDYPSGISDIELVSDE 286 (309)
Q Consensus 226 c~~~~~-~~~l~~~~~~~L~~L~l~~~~-~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~d~ 286 (309)
|..+++ .......++ +|++|++++|. +++.++..+. ..+.|+.+++++| +++.
T Consensus 232 ~~~l~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~--i~~~ 286 (336)
T 2ast_B 232 SVMLKNDCFQEFFQLN-YLQHLSLSRCYDIIPETLLELG-----EIPTLKTLQVFGI--VPDG 286 (336)
T ss_dssp CTTCCGGGGGGGGGCT-TCCEEECTTCTTCCGGGGGGGG-----GCTTCCEEECTTS--SCTT
T ss_pred CCcCCHHHHHHHhCCC-CCCEeeCCCCCCCCHHHHHHHh-----cCCCCCEEeccCc--cCHH
Confidence 986654 222334567 99999999995 7888887775 5678888999988 5553
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=7.6e-25 Score=203.22 Aligned_cols=251 Identities=18% Similarity=0.199 Sum_probs=131.0
Q ss_pred CCCCCCCcHHHHHHHhccCC-hhhhhhhhhhhcHHHHHhccCCCCCceeecCCCCCCcccchhHHHHHHHHHhccCCCce
Q 021667 10 SCDWTQLPADVTSTILSKIG-AIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLL 88 (309)
Q Consensus 10 ~~~~~~LP~eiL~~If~~L~-~~d~~~~~~~Vcr~W~~~~~~~~l~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 88 (309)
.+.|++||+|||.+||+||+ .+++. ++++|||+|+++. +..|+++++..+... .. .... ...++++
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~-~~s~vck~W~~~~--~~~~~~l~~~~~~~~--~~---~~~~-----~~~~~L~ 69 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRN-SVSLVCKSWYEIE--RWCRRKVFIGNCYAV--SP---ATVI-----RRFPKVR 69 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHH-HHHTSCHHHHHHH--HHHCCEEEESSTTSS--CH---HHHH-----HHCTTCC
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHH-HHHHHHHHHHHhh--hhhceEEeecccccc--CH---HHHH-----hhCCCce
Confidence 47899999999999999999 99995 9999999999983 344666666554321 00 0111 1134445
Q ss_pred EEecccc--C-------------ChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCC-CCCHHHH
Q 021667 89 SINIEYF--G-------------TDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYC-SLSQEAL 152 (309)
Q Consensus 89 ~l~l~~~--~-------------~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~~~~ 152 (309)
.+++... . ....+..+...+++|++|++.++ .+++..+..+.+.+++|++|+|.+| .+++.++
T Consensus 70 ~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l 148 (594)
T 2p1m_B 70 SVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGL 148 (594)
T ss_dssp EEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHH
T ss_pred EEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHH
Confidence 5444220 0 11223334444555555555544 3555555444444555555555555 4444445
Q ss_pred HHHHhcCCCCcEEEeccCCCCCCC------------------------cccchhHHHHHhcCCCCcEEEecCCccChHHH
Q 021667 153 EAVGSLCPLLRSFKLNNRGHRCPK------------------------IECDDDAKAIAENMHGLRHLQLFGNELTNVGL 208 (309)
Q Consensus 153 ~~l~~~~~~L~~L~l~~~~~~~~~------------------------~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l 208 (309)
..+...|++|++|++.+|.+.... ......+..+...+++|++|++.+| ....++
T Consensus 149 ~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~l 227 (594)
T 2p1m_B 149 AAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA-VPLEKL 227 (594)
T ss_dssp HHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT-SCHHHH
T ss_pred HHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC-CcHHHH
Confidence 555545555555555543322110 0112334444444555555555555 111224
Q ss_pred HHHHHhCCCCCeeecCCCCC----------------------------cCc--hhHHHHHhHhccCceecCCCCCCchhh
Q 021667 209 QAILDACPHLESLDLRQCFN----------------------------VNL--VGKLGKICAERIRDLRHPNDSTHDYEF 258 (309)
Q Consensus 209 ~~l~~~~~~L~~L~l~~c~~----------------------------~~~--~~~l~~~~~~~L~~L~l~~~~~~d~~~ 258 (309)
..++..+++|++|++..|.. ... ...+...++ +|++|++++|.+++.++
T Consensus 228 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~l~~~~l 306 (594)
T 2p1m_B 228 ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCS-RLTTLNLSYATVQSYDL 306 (594)
T ss_dssp HHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHT-TCCEEECTTCCCCHHHH
T ss_pred HHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhC-CCCEEEccCCCCCHHHH
Confidence 44555555555555433321 000 223334567 88888888888877776
Q ss_pred hhhhhhhccCCcCCCCCCCCcc
Q 021667 259 GADFQDFCWSSVEDYPSGISDI 280 (309)
Q Consensus 259 ~~~~~~~c~~~~~l~~~~~s~~ 280 (309)
.... . .++.|+.++++++
T Consensus 307 ~~~~-~---~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 307 VKLL-C---QCPKLQRLWVLDY 324 (594)
T ss_dssp HHHH-T---TCTTCCEEEEEGG
T ss_pred HHHH-h---cCCCcCEEeCcCc
Confidence 6544 2 4467777788776
No 3
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.89 E-value=1.9e-22 Score=187.11 Aligned_cols=197 Identities=19% Similarity=0.268 Sum_probs=107.0
Q ss_pred CCCCcHHHHHHHhccC-ChhhhhhhhhhhcHHHHHhccCCCCCceeecCCCCCCcccchhHHHHHHHHHhccCCCceEEe
Q 021667 13 WTQLPADVTSTILSKI-GAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSIN 91 (309)
Q Consensus 13 ~~~LP~eiL~~If~~L-~~~d~~~~~~~Vcr~W~~~~~~~~l~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 91 (309)
..+||+|+|.+||+|| +.+++. +++.|||+|+++.. ..++.+.+..+. ......+. ...+++++++
T Consensus 13 ~~~LPdeil~~I~~~L~~~~d~~-~~s~vck~W~~~~~--~~~~~l~~~~~~-----~~~~~~~~-----~~~~~L~~L~ 79 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYITDPKDRD-SASLVCRRWFKIDS--ETREHVTMALCY-----TATPDRLS-----RRFPNLRSLK 79 (592)
T ss_dssp CCCCGGGTHHHHHTTCCCHHHHH-HHTTSCHHHHHHHH--HHCCEEEESCGG-----GSCHHHHH-----HHCTTCSEEE
T ss_pred cCCCCHHHHHHHHHhcCCHHHHH-HHHHHhHHHHHhhh--ccccEEEEeecc-----ccChHHHH-----HhCCCCeEEE
Confidence 3489999999999999 899995 99999999999853 123334333211 00111111 1234455555
Q ss_pred ccc---------------cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCC-cCEEEecCC-CCCHHHHHH
Q 021667 92 IEY---------------FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPL-LEELELSYC-SLSQEALEA 154 (309)
Q Consensus 92 l~~---------------~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~L~~~-~~~~~~~~~ 154 (309)
+.. ......+..+...+++|++|+|.++ .+++..+..+...+++ |++|+|++| .+++.++..
T Consensus 80 L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~ 158 (592)
T 3ogk_B 80 LKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLS 158 (592)
T ss_dssp EECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHH
T ss_pred ecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHH
Confidence 521 1122334445555666666666654 4555555555544444 666666655 345555555
Q ss_pred HHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccC---hHHHHHHHHhCCCCCeeecCCC
Q 021667 155 VGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELT---NVGLQAILDACPHLESLDLRQC 226 (309)
Q Consensus 155 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~---~~~l~~l~~~~~~L~~L~l~~c 226 (309)
+...||+|++|++.++.+... ....+..+...+++|++|+++++.++ ..++..++..|++|+.|++++|
T Consensus 159 ~~~~~~~L~~L~L~~~~~~~~---~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 230 (592)
T 3ogk_B 159 IVTHCRKIKTLLMEESSFSEK---DGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF 230 (592)
T ss_dssp HHHHCTTCSEEECTTCEEECC---CSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC
T ss_pred HHhhCCCCCEEECccccccCc---chhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc
Confidence 555566666666655433211 01113334445555555555555333 4455555555555555555554
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.72 E-value=1.7e-16 Score=147.08 Aligned_cols=196 Identities=18% Similarity=0.204 Sum_probs=136.4
Q ss_pred ccCCCceEEeccccCChHHHHHHHhcCCCccEEEeCC----------CCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHH
Q 021667 82 RSNGQLLSINIEYFGTDELLQYIANRSRNLRNLRLVS----------CYNISDQGFCEAIKGFPLLEELELSYCSLSQEA 151 (309)
Q Consensus 82 ~~~~~l~~l~l~~~~~~~~l~~l~~~~~~L~~L~l~~----------~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 151 (309)
..+++++.|++...+++..+..++..+++|++|++.+ |..+++.++..+...+++|++|++..+.+++..
T Consensus 315 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~ 394 (592)
T 3ogk_B 315 QKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES 394 (592)
T ss_dssp TTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHH
T ss_pred HhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHH
Confidence 4578899998887778888888888899999999995 778888888888888999999999777888888
Q ss_pred HHHHHhcCCCCcEEEeccCCCCCCCcc---cchhHHHHHhcCCCCcEEEecCC--ccChHHHHHHHHhCCCCCeeecCCC
Q 021667 152 LEAVGSLCPLLRSFKLNNRGHRCPKIE---CDDDAKAIAENMHGLRHLQLFGN--ELTNVGLQAILDACPHLESLDLRQC 226 (309)
Q Consensus 152 ~~~l~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~l~~~~~~L~~L~l~~~--~i~~~~l~~l~~~~~~L~~L~l~~c 226 (309)
+..++..+++|++|++.++. .+..++ .+.++..+...+++|++|+++.| .+++.++..+...+++|+.|++++|
T Consensus 395 ~~~l~~~~~~L~~L~l~~~~-~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n 473 (592)
T 3ogk_B 395 LESIGTYLKNLCDFRLVLLD-REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV 473 (592)
T ss_dssp HHHHHHHCCSCCEEEEEECS-CCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC
T ss_pred HHHHHhhCCCCcEEEEeecC-CCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC
Confidence 88888888999999986422 011111 12345555556777777777654 3666666666666777777777665
Q ss_pred CCcCc--hhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccCCC
Q 021667 227 FNVNL--VGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSD 285 (309)
Q Consensus 227 ~~~~~--~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~d 285 (309)
. +++ ...+...++ +|++|++++|++++.+...+. . ..+.++.+++++|. +++
T Consensus 474 ~-l~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~-~---~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 474 G-ESDEGLMEFSRGCP-NLQKLEMRGCCFSERAIAAAV-T---KLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp C-SSHHHHHHHHTCCT-TCCEEEEESCCCBHHHHHHHH-H---HCSSCCEEEEESCB-CCT
T ss_pred C-CCHHHHHHHHhcCc-ccCeeeccCCCCcHHHHHHHH-H---hcCccCeeECcCCc-CCH
Confidence 5 332 234444555 677777777776666665554 2 23456666666666 444
No 5
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.69 E-value=9.2e-16 Score=142.13 Aligned_cols=178 Identities=18% Similarity=0.187 Sum_probs=100.4
Q ss_pred cCCCceEEeccccCChHHHHHHHhcCCCccEEEe--------CCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHH
Q 021667 83 SNGQLLSINIEYFGTDELLQYIANRSRNLRNLRL--------VSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEA 154 (309)
Q Consensus 83 ~~~~l~~l~l~~~~~~~~l~~l~~~~~~L~~L~l--------~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 154 (309)
.+++|+.|++...+++..+..++..+++|++|++ ..+..+++.++..+...+++|++|.+..+.+++.++..
T Consensus 312 ~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~ 391 (594)
T 2p1m_B 312 QCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALIT 391 (594)
T ss_dssp TCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHH
T ss_pred cCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHH
Confidence 3566777776555556666666666777777776 23456666666666666666666666555666666666
Q ss_pred HHhcCCCCcEEEeccCCC-CCCCc---------------------------ccchhHHHHHhcCCCCcEEEecCCccChH
Q 021667 155 VGSLCPLLRSFKLNNRGH-RCPKI---------------------------ECDDDAKAIAENMHGLRHLQLFGNELTNV 206 (309)
Q Consensus 155 l~~~~~~L~~L~l~~~~~-~~~~~---------------------------~~~~~~~~l~~~~~~L~~L~l~~~~i~~~ 206 (309)
++..+|+|+.|++..++. .+..+ ..+..+..+...+++|++|++++|.+++.
T Consensus 392 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~ 471 (594)
T 2p1m_B 392 IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDL 471 (594)
T ss_dssp HHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHH
T ss_pred HHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHH
Confidence 665666666666651110 00100 11333344443455666666666666666
Q ss_pred HHHHHHHhCCCCCeeecCCCCCcCc--hhHHHHHhHhccCceecCCCCCCchhhhhhh
Q 021667 207 GLQAILDACPHLESLDLRQCFNVNL--VGKLGKICAERIRDLRHPNDSTHDYEFGADF 262 (309)
Q Consensus 207 ~l~~l~~~~~~L~~L~l~~c~~~~~--~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~ 262 (309)
++..++..|++|+.|++++|.. ++ ...+...++ +|+.|++++|++++.|...+.
T Consensus 472 ~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~ 527 (594)
T 2p1m_B 472 GMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLE-TMRSLWMSSCSVSFGACKLLG 527 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGG-GSSEEEEESSCCBHHHHHHHH
T ss_pred HHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCC-CCCEEeeeCCCCCHHHHHHHH
Confidence 6666555566666666666654 32 112333455 666666666666665555553
No 6
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.68 E-value=9e-16 Score=132.15 Aligned_cols=165 Identities=15% Similarity=0.140 Sum_probs=139.1
Q ss_pred cCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccC-CCCCCCcccchhHHH
Q 021667 107 RSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNR-GHRCPKIECDDDAKA 185 (309)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~ 185 (309)
.+++|++|+++++ .++..++..++..+++|++|+|++|.+++.....+.. +++|++|++++| .+ .+..+..
T Consensus 91 ~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l------~~~~l~~ 162 (336)
T 2ast_B 91 SPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGF------SEFALQT 162 (336)
T ss_dssp CCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSC------CHHHHHH
T ss_pred cCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc-CCCCCEEECCCCCCC------CHHHHHH
Confidence 4789999999977 5888888888999999999999999999887777765 999999999975 22 2445666
Q ss_pred HHhcCCCCcEEEecCC-ccChHHHHHHHHhCC-CCCeeecCCCC-CcCc--hhHHHHHhHhccCceecCCCC-CCchhhh
Q 021667 186 IAENMHGLRHLQLFGN-ELTNVGLQAILDACP-HLESLDLRQCF-NVNL--VGKLGKICAERIRDLRHPNDS-THDYEFG 259 (309)
Q Consensus 186 l~~~~~~L~~L~l~~~-~i~~~~l~~l~~~~~-~L~~L~l~~c~-~~~~--~~~l~~~~~~~L~~L~l~~~~-~~d~~~~ 259 (309)
+...+++|++|++++| .+++.++..++..++ +|++|++++|. .+++ .......++ +|++|++++|. +++.+..
T Consensus 163 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~~ 241 (336)
T 2ast_B 163 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP-NLVHLDLSDSVMLKNDCFQ 241 (336)
T ss_dssp HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT-TCSEEECTTCTTCCGGGGG
T ss_pred HHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCC-CCCEEeCCCCCcCCHHHHH
Confidence 5669999999999999 999998888899999 99999999996 4553 445667788 99999999999 8988888
Q ss_pred hhhhhhccCCcCCCCCCCCccccCCC
Q 021667 260 ADFQDFCWSSVEDYPSGISDIELVSD 285 (309)
Q Consensus 260 ~~~~~~c~~~~~l~~~~~s~~~~~~d 285 (309)
.+. ..+.++.+++++|..+++
T Consensus 242 ~l~-----~l~~L~~L~l~~~~~~~~ 262 (336)
T 2ast_B 242 EFF-----QLNYLQHLSLSRCYDIIP 262 (336)
T ss_dssp GGG-----GCTTCCEEECTTCTTCCG
T ss_pred HHh-----CCCCCCEeeCCCCCCCCH
Confidence 776 567899999999975555
No 7
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.60 E-value=2.6e-14 Score=128.36 Aligned_cols=187 Identities=18% Similarity=0.176 Sum_probs=88.2
Q ss_pred CceEEeccc-cCChHH---HHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhc----CCCcCEEEecCCCCCHHHHHHH--
Q 021667 86 QLLSINIEY-FGTDEL---LQYIANRSRNLRNLRLVSCYNISDQGFCEAIKG----FPLLEELELSYCSLSQEALEAV-- 155 (309)
Q Consensus 86 ~l~~l~l~~-~~~~~~---l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~L~~~~~~~~~~~~l-- 155 (309)
.+++|++.. .+++.. +......+++|++|+++++ .+++.++..+... .++|++|++++|.+++.+...+
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 164 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence 455666532 333322 2222334556666666544 3554444443332 2356666666665554332222
Q ss_pred -HhcCCCCcEEEeccCCCCCCCcccchhHHHHH----hcCCCCcEEEecCCccChHHH---HHHHHhCCCCCeeecCCCC
Q 021667 156 -GSLCPLLRSFKLNNRGHRCPKIECDDDAKAIA----ENMHGLRHLQLFGNELTNVGL---QAILDACPHLESLDLRQCF 227 (309)
Q Consensus 156 -~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~----~~~~~L~~L~l~~~~i~~~~l---~~l~~~~~~L~~L~l~~c~ 227 (309)
...+++|++|+++++.+. +..+..+. ...++|++|++++|.+++.++ ...+..+++|++|++++|.
T Consensus 165 ~l~~~~~L~~L~L~~n~i~------~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 165 VLRAKPDFKELTVSNNDIN------EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHCTTCCEEECCSSBCH------HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHhhCCCCCEEECcCCCcc------hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 233556666666543321 22222222 234466666666666655442 2233345666666666654
Q ss_pred CcCc-hhHHHH----HhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccc
Q 021667 228 NVNL-VGKLGK----ICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIE 281 (309)
Q Consensus 228 ~~~~-~~~l~~----~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~ 281 (309)
.... ...+.. .++ +|++|++++|.+++.+...+. +.-...+.++.++++++.
T Consensus 239 l~~~~~~~l~~~~~~~~~-~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSS-RLRTLWIWECGITAKGCGDLC-RVLRAKESLKELSLAGNE 295 (461)
T ss_dssp CHHHHHHHHHHHHTSTTC-CCCEEECTTSCCCHHHHHHHH-HHHHHCTTCCEEECTTCC
T ss_pred CChHHHHHHHHHHhcCCC-CceEEECcCCCCCHHHHHHHH-HHHhhCCCcceEECCCCC
Confidence 2221 111211 234 666666666666665544443 111124456666666554
No 8
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.58 E-value=2.5e-13 Score=119.23 Aligned_cols=144 Identities=15% Similarity=0.148 Sum_probs=85.7
Q ss_pred CCccEEEeCCCCCCCHHHHH---HHHhcCCCcCEEEecCCCCCHHHHHHHHh----cCCCCcEEEeccCCCCCCCcccch
Q 021667 109 RNLRNLRLVSCYNISDQGFC---EAIKGFPLLEELELSYCSLSQEALEAVGS----LCPLLRSFKLNNRGHRCPKIECDD 181 (309)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~~~---~~~~~~~~L~~L~L~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~~~~~ 181 (309)
++|++|+++++ .+++.++. ..+..+++|++|+|++|.+++.++..+.. .+++|+.|+++++.+... ...
T Consensus 159 ~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~---g~~ 234 (386)
T 2ca6_A 159 PPLRSIICGRN-RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL---GSS 234 (386)
T ss_dssp CCCCEEECCSS-CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH---HHH
T ss_pred CCCcEEECCCC-CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH---HHH
Confidence 66777777654 45544444 33445667777777777776665444433 566777777765433200 001
Q ss_pred hHHHHHhcCCCCcEEEecCCccChHHHHHHHHh-----CCCCCeeecCCCCCcCc----hh-HHHHHhHhccCceecCCC
Q 021667 182 DAKAIAENMHGLRHLQLFGNELTNVGLQAILDA-----CPHLESLDLRQCFNVNL----VG-KLGKICAERIRDLRHPND 251 (309)
Q Consensus 182 ~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~-----~~~L~~L~l~~c~~~~~----~~-~l~~~~~~~L~~L~l~~~ 251 (309)
.+......+++|++|+|++|.+++.+...+... +++|++|+|++|..... .. .+...++ +|+.|++++|
T Consensus 235 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~-~L~~L~l~~N 313 (386)
T 2ca6_A 235 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP-DLLFLELNGN 313 (386)
T ss_dssp HHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCT-TCCEEECTTS
T ss_pred HHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCC-CceEEEccCC
Confidence 122223467788888888887777766555443 67788888877765442 22 2224456 7888888888
Q ss_pred CCCchh
Q 021667 252 STHDYE 257 (309)
Q Consensus 252 ~~~d~~ 257 (309)
++++.+
T Consensus 314 ~l~~~~ 319 (386)
T 2ca6_A 314 RFSEED 319 (386)
T ss_dssp BSCTTS
T ss_pred cCCcch
Confidence 876655
No 9
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.57 E-value=4.9e-14 Score=126.50 Aligned_cols=190 Identities=17% Similarity=0.143 Sum_probs=119.3
Q ss_pred CCCceEEecc-ccCChHHHHH---HHhcCCCccEEEeCCCCCCCHHHHHHHHhcCC----CcCEEEecCCCCCHHHHH--
Q 021667 84 NGQLLSINIE-YFGTDELLQY---IANRSRNLRNLRLVSCYNISDQGFCEAIKGFP----LLEELELSYCSLSQEALE-- 153 (309)
Q Consensus 84 ~~~l~~l~l~-~~~~~~~l~~---l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~----~L~~L~L~~~~~~~~~~~-- 153 (309)
.++++.+++. ..+++..... ....+++|++|+++++ .+++.++..+...++ +|++|+|++|.+++.+..
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 105 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 105 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence 4677888874 3566554333 3334788888888864 677777777777665 688888888877764433
Q ss_pred -HHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHh----cCCCCcEEEecCCccChHHH---HHHHHhCCCCCeeecCC
Q 021667 154 -AVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAE----NMHGLRHLQLFGNELTNVGL---QAILDACPHLESLDLRQ 225 (309)
Q Consensus 154 -~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~i~~~~l---~~l~~~~~~L~~L~l~~ 225 (309)
.....+++|++|+++++.+. +..+..+.. ..++|++|++++|.+++.+. ...+..+++|++|++++
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~i~------~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~ 179 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNLLG------DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179 (461)
T ss_dssp HHHTTSCTTCCEEECCSSBCH------HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHccCCceeEEECCCCcCc------hHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcC
Confidence 33455778888888764432 333333332 35578888888887776553 33445578888888888
Q ss_pred CCCcCc-hhHHHHH----hHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667 226 CFNVNL-VGKLGKI----CAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL 282 (309)
Q Consensus 226 c~~~~~-~~~l~~~----~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~ 282 (309)
|..... ...+... .+ +|++|++++|.+++.+...+. ..-...+.++.++++++..
T Consensus 180 n~i~~~~~~~l~~~l~~~~~-~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l 239 (461)
T 1z7x_W 180 NDINEAGVRVLCQGLKDSPC-QLEALKLESCGVTSDNCRDLC-GIVASKASLRELALGSNKL 239 (461)
T ss_dssp SBCHHHHHHHHHHHHHHSCC-CCCEEECTTSCCBTTHHHHHH-HHHHHCTTCCEEECCSSBC
T ss_pred CCcchHHHHHHHHHHhcCCC-CceEEEccCCCCcHHHHHHHH-HHHHhCCCccEEeccCCcC
Confidence 763322 2222222 33 788888888888777655444 1111455677788877743
No 10
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.55 E-value=3.3e-13 Score=118.43 Aligned_cols=222 Identities=14% Similarity=0.103 Sum_probs=148.8
Q ss_pred CCCceeecCCCCCCccc---chhHHHHHHHHHhccCCCceEEeccc-cCChHH---HHHHHhcCCCccEEEeCCCCCCCH
Q 021667 52 AMWRNIDMHNLGDLWDM---DHDLEKMCRHAVDRSNGQLLSINIEY-FGTDEL---LQYIANRSRNLRNLRLVSCYNISD 124 (309)
Q Consensus 52 ~l~~~i~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~---l~~l~~~~~~L~~L~l~~~~~~~~ 124 (309)
.-.+.+++..+..-... +..+..+.... ..+++|+.|+++. .+++.. +......+++|++|+|+++ .++.
T Consensus 60 ~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l--~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~ 136 (386)
T 2ca6_A 60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQAL--LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN-GLGP 136 (386)
T ss_dssp TTCCEEECCSCCTTSCGGGSHHHHHHHHHHH--TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS-CCHH
T ss_pred CCccEEeCcccccCccccchhHHHHHHHHHH--hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCC-CCCH
Confidence 34578888765311011 12333333222 2368999999964 555532 3333456999999999976 6665
Q ss_pred HHHHHH---HhcC---------CCcCEEEecCCCCCHHHHHHH---HhcCCCCcEEEeccCCCCCCCcccchhHHHHH--
Q 021667 125 QGFCEA---IKGF---------PLLEELELSYCSLSQEALEAV---GSLCPLLRSFKLNNRGHRCPKIECDDDAKAIA-- 187 (309)
Q Consensus 125 ~~~~~~---~~~~---------~~L~~L~L~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-- 187 (309)
.+...+ +..+ ++|++|+|++|.+++.++..+ ...+++|++|+++++.+. +.++..+.
T Consensus 137 ~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~------~~g~~~l~~~ 210 (386)
T 2ca6_A 137 QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR------PEGIEHLLLE 210 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCC------HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCC------HhHHHHHHHH
Confidence 554433 3334 999999999999986666643 347899999999976543 33433332
Q ss_pred --hcCCCCcEEEecCCccChHHHHHH---HHhCCCCCeeecCCCCCcCc-hhHHHHH-----hHhccCceecCCCCCCch
Q 021667 188 --ENMHGLRHLQLFGNELTNVGLQAI---LDACPHLESLDLRQCFNVNL-VGKLGKI-----CAERIRDLRHPNDSTHDY 256 (309)
Q Consensus 188 --~~~~~L~~L~l~~~~i~~~~l~~l---~~~~~~L~~L~l~~c~~~~~-~~~l~~~-----~~~~L~~L~l~~~~~~d~ 256 (309)
..+++|++|+|++|.+++.+...+ +..+++|++|+|++|..... ...+... ++ +|++|+|++|.+++.
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~-~L~~L~L~~n~i~~~ 289 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENI-GLQTLRLQYNEIELD 289 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSC-CCCEEECCSSCCBHH
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCC-CeEEEECcCCcCCHH
Confidence 389999999999999998766555 45689999999999874432 1122222 56 899999999999997
Q ss_pred hhhhhhhhhccCCcCCCCCCCCccccC
Q 021667 257 EFGADFQDFCWSSVEDYPSGISDIELV 283 (309)
Q Consensus 257 ~~~~~~~~~c~~~~~l~~~~~s~~~~~ 283 (309)
|+..+........+.+..++++++...
T Consensus 290 g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 290 AVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 776654222123567777887777654
No 11
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.55 E-value=1.1e-13 Score=120.49 Aligned_cols=171 Identities=17% Similarity=0.143 Sum_probs=133.0
Q ss_pred CCCceEEecc-ccCChHHHHHHHhc----CCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHh-
Q 021667 84 NGQLLSINIE-YFGTDELLQYIANR----SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGS- 157 (309)
Q Consensus 84 ~~~l~~l~l~-~~~~~~~l~~l~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~- 157 (309)
.+.++.+++. +.+++.....++.. +++|++|+|+++ .+++.++..+...+++|++|+|++|.+++.+...++.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 5678999995 46777666555443 469999999976 7899999888888899999999999999988877654
Q ss_pred ---cCCCCcEEEeccCCCCCCCcccchhHHHH---HhcCCCCcEEEecCCccChHHHHHHH---HhCCCCCeeecCCCCC
Q 021667 158 ---LCPLLRSFKLNNRGHRCPKIECDDDAKAI---AENMHGLRHLQLFGNELTNVGLQAIL---DACPHLESLDLRQCFN 228 (309)
Q Consensus 158 ---~~~~L~~L~l~~~~~~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~i~~~~l~~l~---~~~~~L~~L~l~~c~~ 228 (309)
.+++|++|++++|.+. +.+...+ ...+++|++|+|++|.+++.++..+. ..+++|+.|+|++|..
T Consensus 150 L~~~~~~L~~L~Ls~n~l~------~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLT------AAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp HHSTTCCCCEEECCSSCCH------HHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred HHhcCCccceeeCCCCCCC------hHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence 4688999999986553 3333333 23789999999999999998877665 3467899999999865
Q ss_pred cCc-hhHHH---HHhHhccCceecCCCCCCchhhhhhh
Q 021667 229 VNL-VGKLG---KICAERIRDLRHPNDSTHDYEFGADF 262 (309)
Q Consensus 229 ~~~-~~~l~---~~~~~~L~~L~l~~~~~~d~~~~~~~ 262 (309)
... ...+. ..++ +|++|+|++|.+++.|...+.
T Consensus 224 ~~~g~~~l~~~L~~~~-~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 224 GDTAALALARAAREHP-SLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp CHHHHHHHHHHHHHCS-SCCEEECTTSSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCC-CCCEEeccCCCCCHHHHHHHH
Confidence 432 12232 3456 899999999999999999887
No 12
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.49 E-value=5.1e-13 Score=116.21 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=8.1
Q ss_pred ccCceecCCCCCCchhh
Q 021667 242 RIRDLRHPNDSTHDYEF 258 (309)
Q Consensus 242 ~L~~L~l~~~~~~d~~~ 258 (309)
+|++|+|++|.+++.+.
T Consensus 226 ~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 226 HVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp TCCEEECCSSCCCCCCH
T ss_pred CceEEECcCCCCCcHHH
Confidence 44444554444444444
No 13
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.48 E-value=1.9e-14 Score=88.30 Aligned_cols=50 Identities=26% Similarity=0.683 Sum_probs=40.0
Q ss_pred cCCCCCCCCcHHHHHHHhccCChhhhhhhhhhhcHHHHHhccCCCCCceee
Q 021667 8 QESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNID 58 (309)
Q Consensus 8 ~~~~~~~~LP~eiL~~If~~L~~~d~~~~~~~Vcr~W~~~~~~~~l~~~i~ 58 (309)
.+...|..||+|++.+||+||+.+++. ++++|||+|+.++.++.+|+.++
T Consensus 4 ~~~~~~~~LP~eil~~I~~~L~~~dl~-~~~~Vck~w~~~~~~~~lW~~ld 53 (53)
T 1fs1_A 4 FPGVSWDSLPDELLLGIFSCLCLPELL-KVSGVCKRWYRLASDESLWQTLD 53 (53)
T ss_dssp -----CCSSCHHHHHHHHTTSCGGGHH-HHHTTCHHHHHHHTCGGGC----
T ss_pred CCCCCHHHCCHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHhCChHHHHhcC
Confidence 456789999999999999999999996 99999999999999999999874
No 14
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.47 E-value=1.3e-13 Score=120.18 Aligned_cols=166 Identities=16% Similarity=0.125 Sum_probs=128.6
Q ss_pred CCCccEEEeCCCCCCCHHHHHHHHhc----CCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhH
Q 021667 108 SRNLRNLRLVSCYNISDQGFCEAIKG----FPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDA 183 (309)
Q Consensus 108 ~~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 183 (309)
.+.|++|+++++ .++..++..+... +++|++|+|++|.+++.++..++..+++|+.|++++|.+. +..+
T Consensus 71 ~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~------~~~~ 143 (372)
T 3un9_A 71 LSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG------PEAC 143 (372)
T ss_dssp HTTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC------HHHH
T ss_pred HhhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC------HHHH
Confidence 468999999976 7887776655443 3699999999999999999988888899999999986554 4444
Q ss_pred HHHH----hcCCCCcEEEecCCccChHHHHHHH---HhCCCCCeeecCCCCCcCc-hhHHH---HHhHhccCceecCCCC
Q 021667 184 KAIA----ENMHGLRHLQLFGNELTNVGLQAIL---DACPHLESLDLRQCFNVNL-VGKLG---KICAERIRDLRHPNDS 252 (309)
Q Consensus 184 ~~l~----~~~~~L~~L~l~~~~i~~~~l~~l~---~~~~~L~~L~l~~c~~~~~-~~~l~---~~~~~~L~~L~l~~~~ 252 (309)
..+. ...++|++|+|++|.+++.+...+. ..+++|++|+|++|..... ...+. ...+ +|++|+|++|.
T Consensus 144 ~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~-~L~~L~Ls~N~ 222 (372)
T 3un9_A 144 KDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR-QLQELNVAYNG 222 (372)
T ss_dssp HHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS-CCCEEECCSSC
T ss_pred HHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC-CcCeEECCCCC
Confidence 4443 3578999999999999988876664 5688999999999874332 12222 3445 89999999999
Q ss_pred CCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667 253 THDYEFGADFQDFCWSSVEDYPSGISDIEL 282 (309)
Q Consensus 253 ~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~ 282 (309)
+++.|...+. ......+.+..+|++++..
T Consensus 223 i~~~g~~~l~-~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 223 AGDTAALALA-RAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp CCHHHHHHHH-HHHHHCSSCCEEECTTSSC
T ss_pred CCHHHHHHHH-HHHHhCCCCCEEeccCCCC
Confidence 9999988876 3333456788999998864
No 15
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.42 E-value=1.7e-12 Score=112.88 Aligned_cols=196 Identities=13% Similarity=0.051 Sum_probs=129.8
Q ss_pred CCCceEEeccc-cCChHHH---HHHHhcCC-CccEEEeCCCCCCCHH---HHHHHHhcC-CCcCEEEecCCCCCHHHHH-
Q 021667 84 NGQLLSINIEY-FGTDELL---QYIANRSR-NLRNLRLVSCYNISDQ---GFCEAIKGF-PLLEELELSYCSLSQEALE- 153 (309)
Q Consensus 84 ~~~l~~l~l~~-~~~~~~l---~~l~~~~~-~L~~L~l~~~~~~~~~---~~~~~~~~~-~~L~~L~L~~~~~~~~~~~- 153 (309)
...++.|+++. .+++... ......++ +|++|+|+++ .+++. .+..++... ++|++|+|++|.+++....
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 45599999964 3444333 23334577 9999999976 66644 344444444 9999999999977654433
Q ss_pred --HHHhcC-CCCcEEEeccCCCCCCCcccchhHHHHHhc-CCCCcEEEecCCccChHHHHHHH---HhCC-CCCeeecCC
Q 021667 154 --AVGSLC-PLLRSFKLNNRGHRCPKIECDDDAKAIAEN-MHGLRHLQLFGNELTNVGLQAIL---DACP-HLESLDLRQ 225 (309)
Q Consensus 154 --~l~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~-~~~L~~L~l~~~~i~~~~l~~l~---~~~~-~L~~L~l~~ 225 (309)
.....+ ++|++|+++++.+... . ...+...... +++|++|++++|.+++.+...+. ...+ +|++|++++
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l~~~--~-~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 176 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDFSSK--S-SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGS--C-HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHHHHHhCCCCccEEECcCCcCCcH--H-HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecC
Confidence 333445 7999999998766532 1 1122222224 46999999999999876655543 3455 899999999
Q ss_pred CCCcCch-hHH---HHHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccC
Q 021667 226 CFNVNLV-GKL---GKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELV 283 (309)
Q Consensus 226 c~~~~~~-~~l---~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~ 283 (309)
|...... ..+ ...++++|++|+|++|.+++.+...+........+.++.+|++++...
T Consensus 177 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 177 NNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred CCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 8754432 222 223312899999999999998777665323212347888999887553
No 16
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.37 E-value=8.1e-13 Score=101.40 Aligned_cols=93 Identities=18% Similarity=0.306 Sum_probs=51.6
Q ss_pred CccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCC-CCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHh
Q 021667 110 NLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYC-SLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAE 188 (309)
Q Consensus 110 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 188 (309)
+|++|++++|. +++.++..+ ..|++|++|+|++| .++|.++..++..- .
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~----------------------------~ 111 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLE----------------------------N 111 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCH----------------------------H
T ss_pred eEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcc----------------------------c
Confidence 45555555542 555555443 34555555555555 45555555444310 0
Q ss_pred cCCCCcEEEecCC-ccChHHHHHHHHhCCCCCeeecCCCCCcCchh
Q 021667 189 NMHGLRHLQLFGN-ELTNVGLQAILDACPHLESLDLRQCFNVNLVG 233 (309)
Q Consensus 189 ~~~~L~~L~l~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~ 233 (309)
.+++|++|+|++| .|||.++..+. .|++|++|+|++|+.+++.+
T Consensus 112 ~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 112 LQKSMLEMEIISCGNVTDKGIIALH-HFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp HHHHCCEEEEESCTTCCHHHHHHGG-GCTTCCEEEEESCTTCCCHH
T ss_pred ccCCCCEEEcCCCCcCCHHHHHHHh-cCCCCCEEECCCCCCCCchH
Confidence 1345666666666 57777776654 56777777777777666644
No 17
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.31 E-value=5.6e-12 Score=96.73 Aligned_cols=104 Identities=14% Similarity=0.225 Sum_probs=83.2
Q ss_pred CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhc---CCCcCEEEecCC-CCCHHHHHHHHhc
Q 021667 84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKG---FPLLEELELSYC-SLSQEALEAVGSL 158 (309)
Q Consensus 84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~L~~~-~~~~~~~~~l~~~ 158 (309)
...|++++++. .+++.++..+. .|++|++|+|++|..+++.++..+... +++|++|+|++| .+++.++..++.
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~- 137 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH- 137 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG-
T ss_pred CceEeEEeCcCCCccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc-
Confidence 34799999953 69999998885 699999999999999999999999873 679999999999 799999998864
Q ss_pred CCCCcEEEeccCCCCCCCcccchh--HHHHHhcCCCCc
Q 021667 159 CPLLRSFKLNNRGHRCPKIECDDD--AKAIAENMHGLR 194 (309)
Q Consensus 159 ~~~L~~L~l~~~~~~~~~~~~~~~--~~~l~~~~~~L~ 194 (309)
|++|++|++++| +.++ +.+ ...+...+|+++
T Consensus 138 ~~~L~~L~L~~c----~~It-d~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 138 FRNLKYLFLSDL----PGVK-EKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp CTTCCEEEEESC----TTCC-CHHHHHHHHHHHCTTCE
T ss_pred CCCCCEEECCCC----CCCC-chHHHHHHHHHHCCCcE
Confidence 899999999873 3233 332 345555777765
No 18
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.22 E-value=5.7e-12 Score=99.89 Aligned_cols=149 Identities=15% Similarity=0.136 Sum_probs=91.1
Q ss_pred CCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHH
Q 021667 108 SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIA 187 (309)
Q Consensus 108 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 187 (309)
+++|++|++.++ .+++ +. -+..+++|++|++++|.+... . ....+++|++|+++++.+.. .....+.
T Consensus 43 l~~L~~L~l~~n-~i~~--l~-~l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~l~~n~l~~------~~~~~l~ 109 (197)
T 4ezg_A 43 MNSLTYITLANI-NVTD--LT-GIEYAHNIKDLTINNIHATNY--N-PISGLSNLERLRIMGKDVTS------DKIPNLS 109 (197)
T ss_dssp HHTCCEEEEESS-CCSC--CT-TGGGCTTCSEEEEESCCCSCC--G-GGTTCTTCCEEEEECTTCBG------GGSCCCT
T ss_pred cCCccEEeccCC-CccC--hH-HHhcCCCCCEEEccCCCCCcc--h-hhhcCCCCCEEEeECCccCc------ccChhhc
Confidence 457777877754 3432 11 245677888888887755432 1 23447788888887655432 1111223
Q ss_pred hcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhcc
Q 021667 188 ENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCW 267 (309)
Q Consensus 188 ~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~ 267 (309)
.+++|++|++++|.+++.....+ ..+++|++|++++|..+++.. ....++ +|+.|++++|.+++.. .+.
T Consensus 110 -~l~~L~~L~Ls~n~i~~~~~~~l-~~l~~L~~L~L~~n~~i~~~~-~l~~l~-~L~~L~l~~n~i~~~~--~l~----- 178 (197)
T 4ezg_A 110 -GLTSLTLLDISHSAHDDSILTKI-NTLPKVNSIDLSYNGAITDIM-PLKTLP-ELKSLNIQFDGVHDYR--GIE----- 178 (197)
T ss_dssp -TCTTCCEEECCSSBCBGGGHHHH-TTCSSCCEEECCSCTBCCCCG-GGGGCS-SCCEEECTTBCCCCCT--TGG-----
T ss_pred -CCCCCCEEEecCCccCcHhHHHH-hhCCCCCEEEccCCCCccccH-hhcCCC-CCCEEECCCCCCcChH--Hhc-----
Confidence 67788888888887776555443 367788888888877555544 244556 7888888888877643 232
Q ss_pred CCcCCCCCCCCcc
Q 021667 268 SSVEDYPSGISDI 280 (309)
Q Consensus 268 ~~~~l~~~~~s~~ 280 (309)
..+.++.+++++.
T Consensus 179 ~l~~L~~L~l~~N 191 (197)
T 4ezg_A 179 DFPKLNQLYAFSQ 191 (197)
T ss_dssp GCSSCCEEEECBC
T ss_pred cCCCCCEEEeeCc
Confidence 3445666666544
No 19
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.19 E-value=8.9e-11 Score=101.54 Aligned_cols=171 Identities=16% Similarity=0.082 Sum_probs=119.1
Q ss_pred CCCceEEecccc-C--------ChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHH
Q 021667 84 NGQLLSINIEYF-G--------TDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEA 154 (309)
Q Consensus 84 ~~~l~~l~l~~~-~--------~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 154 (309)
.++|+.|.+... . ....+..+...+|+|++|.|.++..+.. .. . ..++|++|.|..+.+++..+..
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l---~~-~-~~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI---GK-K-PRPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC---CS-C-BCTTCSEEEEECSBCCHHHHHH
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee---cc-c-cCCCCcEEEEecCCCChHHHHH
Confidence 458888877432 1 1123556667799999999987632321 11 1 3799999999999999998888
Q ss_pred HHh-cCCCCcEEEeccCCC-CCCCcccchhHHH-HH-hcCCCCcEEEecCCccChHHHHHHHH--hCCCCCeeecCCCCC
Q 021667 155 VGS-LCPLLRSFKLNNRGH-RCPKIECDDDAKA-IA-ENMHGLRHLQLFGNELTNVGLQAILD--ACPHLESLDLRQCFN 228 (309)
Q Consensus 155 l~~-~~~~L~~L~l~~~~~-~~~~~~~~~~~~~-l~-~~~~~L~~L~l~~~~i~~~~l~~l~~--~~~~L~~L~l~~c~~ 228 (309)
++. .+|+|++|.|..+.. .... .....+.. +. ..+|+|++|.+.+|.+++.+...++. .+|+|++|+|+.|.
T Consensus 213 l~~~~lp~L~~L~L~~~~~~~~~~-~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~- 290 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLYVGVEDYGFD-GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV- 290 (362)
T ss_dssp HHHSBCTTCCEEEEECBCGGGTCC-SCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-
T ss_pred HHHccCCCCcEEEEeccccccccc-hhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-
Confidence 874 689999999853110 0000 00001111 11 25899999999999999888777765 47889999998754
Q ss_pred cCch--hHHH---HHhHhccCceecCCCCCCchhhhhhh
Q 021667 229 VNLV--GKLG---KICAERIRDLRHPNDSTHDYEFGADF 262 (309)
Q Consensus 229 ~~~~--~~l~---~~~~~~L~~L~l~~~~~~d~~~~~~~ 262 (309)
+++. .++. ..++ +|+.|++++|.++|.+..++.
T Consensus 291 L~d~G~~~L~~~L~~l~-~L~~L~L~~n~i~d~~~~~l~ 328 (362)
T 2ra8_A 291 LTDEGARLLLDHVDKIK-HLKFINMKYNYLSDEMKKELQ 328 (362)
T ss_dssp CBHHHHHHHHTTHHHHT-TCSEEECCSBBCCHHHHHHHH
T ss_pred CChHHHHHHHhhcccCC-cceEEECCCCcCCHHHHHHHH
Confidence 5542 2333 4567 999999999999999999987
No 20
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.17 E-value=2.4e-10 Score=89.53 Aligned_cols=123 Identities=15% Similarity=0.120 Sum_probs=70.6
Q ss_pred HHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHh---cCCCcCEEEecCCCCCHHHHHHHHh---cCCCCcEEEeccCCC
Q 021667 99 ELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIK---GFPLLEELELSYCSLSQEALEAVGS---LCPLLRSFKLNNRGH 172 (309)
Q Consensus 99 ~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~L~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~ 172 (309)
..+..+...+++|++|+|.++..+++.++..+.. ..++|++|+|++|.+++.+...++. ..++|++|+++++.+
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 3445555557777777777554677766555443 3467777777777777776655543 235666666665433
Q ss_pred CCCCcccchhHHHHH---hcCCCCcEEEe--cCCccChHHHHHHH---HhCCCCCeeecCCCC
Q 021667 173 RCPKIECDDDAKAIA---ENMHGLRHLQL--FGNELTNVGLQAIL---DACPHLESLDLRQCF 227 (309)
Q Consensus 173 ~~~~~~~~~~~~~l~---~~~~~L~~L~l--~~~~i~~~~l~~l~---~~~~~L~~L~l~~c~ 227 (309)
. +.++.+++ ...++|++|+| .+|.+++++...+. ..++.|++|++++|.
T Consensus 106 ~------~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 106 S------GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp C------HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred C------HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 2 33333332 24456666666 55666666543333 234556666665544
No 21
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.16 E-value=8.6e-10 Score=86.33 Aligned_cols=127 Identities=16% Similarity=0.163 Sum_probs=94.2
Q ss_pred HHHHHHHHhcCCCcCEEEecCC-CCCHHHHHHHHh---cCCCCcEEEeccCCCCCCCcccchhHHHHH---hcCCCCcEE
Q 021667 124 DQGFCEAIKGFPLLEELELSYC-SLSQEALEAVGS---LCPLLRSFKLNNRGHRCPKIECDDDAKAIA---ENMHGLRHL 196 (309)
Q Consensus 124 ~~~~~~~~~~~~~L~~L~L~~~-~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~---~~~~~L~~L 196 (309)
.+.+..++...+.|++|+|++| .+++.++..++. ..++|++|+++++.+. +.++..++ ...++|++|
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~------~~g~~~l~~~L~~n~~L~~L 98 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN------DPVAFALAEMLKVNNTLKSL 98 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC------HHHHHHHHHHHHHCSSCCEE
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC------hHHHHHHHHHHHhCCCcCEE
Confidence 4556777788899999999999 999988776664 3578999999876554 44444332 366889999
Q ss_pred EecCCccChHHHHHHHHh---CCCCCeeec--CCCCCcCc-----hhHHHHHhHhccCceecCCCCCCchhh
Q 021667 197 QLFGNELTNVGLQAILDA---CPHLESLDL--RQCFNVNL-----VGKLGKICAERIRDLRHPNDSTHDYEF 258 (309)
Q Consensus 197 ~l~~~~i~~~~l~~l~~~---~~~L~~L~l--~~c~~~~~-----~~~l~~~~~~~L~~L~l~~~~~~d~~~ 258 (309)
+|++|.|++.+...++.. ++.|++|+| ++|. +++ +.......+ +|++|+|++|.+++.|.
T Consensus 99 ~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~-~L~~L~L~~n~i~~~~~ 168 (185)
T 1io0_A 99 NVESNFISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNT-TLLKFGYHFTQQGPRLR 168 (185)
T ss_dssp ECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCS-SCCEEECCCSSHHHHHH
T ss_pred ECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCC-CcCEEeccCCCCChHHH
Confidence 999999999998777655 567999999 5554 444 223334445 89999999999877763
No 22
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.15 E-value=2.2e-11 Score=91.95 Aligned_cols=130 Identities=22% Similarity=0.233 Sum_probs=67.8
Q ss_pred CCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHH
Q 021667 108 SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIA 187 (309)
Q Consensus 108 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 187 (309)
.++|+.|+++++ .+++..+...+..+++|+.|++++|.++.. .....+++|+.|+++++.+... +....
T Consensus 16 ~~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~-------~~~~~ 84 (149)
T 2je0_A 16 PSDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGG-------LEVLA 84 (149)
T ss_dssp GGGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSC-------THHHH
T ss_pred CccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccch-------HHHHh
Confidence 356666666655 333222223334566677777776655432 2223456666666665444311 22233
Q ss_pred hcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchh---HHHHHhHhccCceecC
Q 021667 188 ENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVG---KLGKICAERIRDLRHP 249 (309)
Q Consensus 188 ~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~---~l~~~~~~~L~~L~l~ 249 (309)
..+++|++|++++|.+++......+..+++|++|++++|....... .....++ +|+.|+++
T Consensus 85 ~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~-~L~~L~l~ 148 (149)
T 2je0_A 85 EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLP-QLTYLDGY 148 (149)
T ss_dssp HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCT-TCCEETTB
T ss_pred hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCC-CcccccCC
Confidence 2566666666666666653332334456666666666664333222 3445555 66666654
No 23
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.14 E-value=1.5e-10 Score=99.89 Aligned_cols=169 Identities=12% Similarity=0.049 Sum_probs=94.0
Q ss_pred CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667 84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL 162 (309)
Q Consensus 84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L 162 (309)
.+.++.+++.. .+.+... ...+++|+.|++.++ .++.... ...+++|+.|+++++.+..... ...+++|
T Consensus 154 l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L 223 (347)
T 4fmz_A 154 MTGLNYLTVTESKVKDVTP---IANLTDLYSLSLNYN-QIEDISP---LASLTSLHYFTAYVNQITDITP---VANMTRL 223 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG---GGGCTTCSEEECTTS-CCCCCGG---GGGCTTCCEEECCSSCCCCCGG---GGGCTTC
T ss_pred CCCCcEEEecCCCcCCchh---hccCCCCCEEEccCC-ccccccc---ccCCCccceeecccCCCCCCch---hhcCCcC
Confidence 56777777753 2221111 345788888888765 3332111 4456777777777775543221 3456777
Q ss_pred cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhc
Q 021667 163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAER 242 (309)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~ 242 (309)
+.|+++++.+... .. ...+++|++|++++|.++.- ..+..+++|++|++++|.... .. ....++ +
T Consensus 224 ~~L~l~~n~l~~~----~~-----~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~-~ 288 (347)
T 4fmz_A 224 NSLKIGNNKITDL----SP-----LANLSQLTWLEIGTNQISDI---NAVKDLTKLKMLNVGSNQISD-IS-VLNNLS-Q 288 (347)
T ss_dssp CEEECCSSCCCCC----GG-----GTTCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCC-CG-GGGGCT-T
T ss_pred CEEEccCCccCCC----cc-----hhcCCCCCEEECCCCccCCC---hhHhcCCCcCEEEccCCccCC-Ch-hhcCCC-C
Confidence 7777766544321 11 22666777777777655542 123356667777776664333 22 233445 6
Q ss_pred cCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667 243 IRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL 282 (309)
Q Consensus 243 L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~ 282 (309)
|+.|++++|.+++.....+. ..+.+..++++++..
T Consensus 289 L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 289 LNSLFLNNNQLGNEDMEVIG-----GLTNLTTLFLSQNHI 323 (347)
T ss_dssp CSEEECCSSCCCGGGHHHHH-----TCTTCSEEECCSSSC
T ss_pred CCEEECcCCcCCCcChhHhh-----ccccCCEEEccCCcc
Confidence 67777777666665555554 445566666666653
No 24
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.12 E-value=3e-12 Score=107.50 Aligned_cols=185 Identities=16% Similarity=0.078 Sum_probs=91.9
Q ss_pred CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667 84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL 162 (309)
Q Consensus 84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L 162 (309)
.++++.|++.. .++...... ...+++|++|+++++..++... ...+..+++|++|++++|.+..... .....+++|
T Consensus 55 ~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L 131 (285)
T 1ozn_A 55 CRNLTILWLHSNVLARIDAAA-FTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLHTLHLDRCGLQELGP-GLFRGLAAL 131 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTC
T ss_pred CCCCCEEECCCCccceeCHhh-cCCccCCCEEeCCCCCCccccC-HHHhcCCcCCCEEECCCCcCCEECH-hHhhCCcCC
Confidence 45666666643 222211111 2236677777776543233211 1123346677777777765442211 112346677
Q ss_pred cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhc
Q 021667 163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAER 242 (309)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~ 242 (309)
+.|+++++.+... . ...+ ..+++|++|++++|.++..... .+..+++|++|++++|............++ +
T Consensus 132 ~~L~l~~n~l~~~--~----~~~~-~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~ 202 (285)
T 1ozn_A 132 QYLYLQDNALQAL--P----DDTF-RDLGNLTHLFLHGNRISSVPER-AFRGLHSLDRLLLHQNRVAHVHPHAFRDLG-R 202 (285)
T ss_dssp CEEECCSSCCCCC--C----TTTT-TTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCT-T
T ss_pred CEEECCCCccccc--C----HhHh-ccCCCccEEECCCCcccccCHH-HhcCccccCEEECCCCcccccCHhHccCcc-c
Confidence 7777766544321 0 0011 2566777777777655532111 123466677777766654333222333455 6
Q ss_pred cCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccCCC
Q 021667 243 IRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSD 285 (309)
Q Consensus 243 L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~d 285 (309)
|+.|++++|.+++.....+. ..+.+..+++++.....|
T Consensus 203 L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 203 LMTLYLFANNLSALPTEALA-----PLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp CCEEECCSSCCSCCCHHHHT-----TCTTCCEEECCSSCEECS
T ss_pred ccEeeCCCCcCCcCCHHHcc-----cCcccCEEeccCCCccCC
Confidence 77777777766655444443 445566666665555433
No 25
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.11 E-value=5.7e-11 Score=94.11 Aligned_cols=150 Identities=17% Similarity=0.189 Sum_probs=104.5
Q ss_pred CCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCc
Q 021667 85 GQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLR 163 (309)
Q Consensus 85 ~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~ 163 (309)
+.++.+++.. .+++ +.. ...+++|++|++.++ .++.. . .+..+++|++|++++|.+++.....+ ..+++|+
T Consensus 44 ~~L~~L~l~~n~i~~--l~~-l~~l~~L~~L~l~~n-~~~~~--~-~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~ 115 (197)
T 4ezg_A 44 NSLTYITLANINVTD--LTG-IEYAHNIKDLTINNI-HATNY--N-PISGLSNLERLRIMGKDVTSDKIPNL-SGLTSLT 115 (197)
T ss_dssp HTCCEEEEESSCCSC--CTT-GGGCTTCSEEEEESC-CCSCC--G-GGTTCTTCCEEEEECTTCBGGGSCCC-TTCTTCC
T ss_pred CCccEEeccCCCccC--hHH-HhcCCCCCEEEccCC-CCCcc--h-hhhcCCCCCEEEeECCccCcccChhh-cCCCCCC
Confidence 4567777743 3332 112 345899999999987 44432 1 34568999999999998876444433 3589999
Q ss_pred EEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCc-cChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhc
Q 021667 164 SFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNE-LTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAER 242 (309)
Q Consensus 164 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~ 242 (309)
.|+++++.+. +.....+. .+++|++|++++|. +++-. .+..+++|+.|++++|.... .. ....++ +
T Consensus 116 ~L~Ls~n~i~------~~~~~~l~-~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~-~ 182 (197)
T 4ezg_A 116 LLDISHSAHD------DSILTKIN-TLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHD-YR-GIEDFP-K 182 (197)
T ss_dssp EEECCSSBCB------GGGHHHHT-TCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCC-CT-TGGGCS-S
T ss_pred EEEecCCccC------cHhHHHHh-hCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcC-hH-HhccCC-C
Confidence 9999976543 33445555 89999999999996 77642 35579999999999987443 33 345667 9
Q ss_pred cCceecCCCCCCc
Q 021667 243 IRDLRHPNDSTHD 255 (309)
Q Consensus 243 L~~L~l~~~~~~d 255 (309)
|+.|++++|++++
T Consensus 183 L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 183 LNQLYAFSQTIGG 195 (197)
T ss_dssp CCEEEECBC----
T ss_pred CCEEEeeCcccCC
Confidence 9999999999764
No 26
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.11 E-value=3.4e-12 Score=109.48 Aligned_cols=89 Identities=19% Similarity=0.119 Sum_probs=53.4
Q ss_pred cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccC
Q 021667 189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWS 268 (309)
Q Consensus 189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~ 268 (309)
.+++|++|++++|.++. +..-+..+++|++|++++|...+........++ +|+.|++++|.+....-..+. .
T Consensus 204 ~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~-~L~~L~L~~n~~~~~~p~~~~-----~ 275 (328)
T 4fcg_A 204 NLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA-PLKRLILKDCSNLLTLPLDIH-----R 275 (328)
T ss_dssp GCTTCCEEEEESSCCCC--CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCC-CCCEEECTTCTTCCBCCTTGG-----G
T ss_pred CCCCCCEEEccCCCCCc--CchhhccCCCCCEEECcCCcchhhhHHHhcCCC-CCCEEECCCCCchhhcchhhh-----c
Confidence 66777777777776552 111234567777777777766665443344456 777777777765433222232 4
Q ss_pred CcCCCCCCCCccccCCC
Q 021667 269 SVEDYPSGISDIELVSD 285 (309)
Q Consensus 269 ~~~l~~~~~s~~~~~~d 285 (309)
.+.|+.+++++|.....
T Consensus 276 l~~L~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 276 LTQLEKLDLRGCVNLSR 292 (328)
T ss_dssp CTTCCEEECTTCTTCCC
T ss_pred CCCCCEEeCCCCCchhh
Confidence 45677777777766544
No 27
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.10 E-value=9.5e-12 Score=95.94 Aligned_cols=133 Identities=26% Similarity=0.275 Sum_probs=56.6
Q ss_pred CCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHh
Q 021667 109 RNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAE 188 (309)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 188 (309)
++|+.|++.++ .+++..+...+..+++|+.|++++|.+... .....+++|+.|+++++.+... +.....
T Consensus 24 ~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~-------~~~~~~ 92 (168)
T 2ell_A 24 AAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGG-------LDMLAE 92 (168)
T ss_dssp TSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSC-------CCHHHH
T ss_pred ccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchH-------HHHHHh
Confidence 45555555544 233222222233455555555555544332 1223345555555554433211 111222
Q ss_pred cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchh---HHHHHhHhccCceecCCCCC
Q 021667 189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVG---KLGKICAERIRDLRHPNDST 253 (309)
Q Consensus 189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~---~l~~~~~~~L~~L~l~~~~~ 253 (309)
.+++|++|++++|.+++-.....+..+++|+.|++++|....... .....++ +|+.|++++|.+
T Consensus 93 ~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~-~L~~L~l~~n~~ 159 (168)
T 2ell_A 93 KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLP-QLTYLDGYDRED 159 (168)
T ss_dssp HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCS-SCCEETTEETTS
T ss_pred hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCc-cCcEecCCCCCh
Confidence 355555555555544432111122244555555555544332211 2333344 555555555443
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.09 E-value=4.3e-10 Score=96.98 Aligned_cols=169 Identities=15% Similarity=0.068 Sum_probs=86.4
Q ss_pred CCCceEEeccccCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCc
Q 021667 84 NGQLLSINIEYFGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLR 163 (309)
Q Consensus 84 ~~~l~~l~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~ 163 (309)
.+.++.+++........+.. ...+++|+.|++.++....... +..+++|++|++++|.+.+... ...+++|+
T Consensus 131 l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~ 202 (347)
T 4fmz_A 131 LTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP----IANLTDLYSLSLNYNQIEDISP---LASLTSLH 202 (347)
T ss_dssp CTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECTTSCCCCCGG---GGGCTTCC
T ss_pred CCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh----hccCCCCCEEEccCCccccccc---ccCCCccc
Confidence 45566666643210011111 2346667777776552222111 4456677777777665443211 34466677
Q ss_pred EEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhcc
Q 021667 164 SFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERI 243 (309)
Q Consensus 164 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L 243 (309)
.|.+.++.+... .. ...+++|++|++++|.++.... +..+++|++|++++|.... .. ....++ +|
T Consensus 203 ~L~l~~n~l~~~----~~-----~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~-~~-~~~~l~-~L 267 (347)
T 4fmz_A 203 YFTAYVNQITDI----TP-----VANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQISD-IN-AVKDLT-KL 267 (347)
T ss_dssp EEECCSSCCCCC----GG-----GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCC-CG-GGTTCT-TC
T ss_pred eeecccCCCCCC----ch-----hhcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCCccCC-Ch-hHhcCC-Cc
Confidence 777665444321 10 2266677777777765553222 3456667777776664333 22 123445 67
Q ss_pred CceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667 244 RDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL 282 (309)
Q Consensus 244 ~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~ 282 (309)
+.|++++|.+++.. .+. ..+.++.++++++..
T Consensus 268 ~~L~l~~n~l~~~~--~~~-----~l~~L~~L~L~~n~l 299 (347)
T 4fmz_A 268 KMLNVGSNQISDIS--VLN-----NLSQLNSLFLNNNQL 299 (347)
T ss_dssp CEEECCSSCCCCCG--GGG-----GCTTCSEEECCSSCC
T ss_pred CEEEccCCccCCCh--hhc-----CCCCCCEEECcCCcC
Confidence 77777776665542 222 344566666666644
No 29
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.07 E-value=2.5e-10 Score=96.87 Aligned_cols=167 Identities=11% Similarity=0.125 Sum_probs=109.3
Q ss_pred CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667 84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL 162 (309)
Q Consensus 84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L 162 (309)
.++++.|+++. .+++.. . ...+++|++|+++++ .++.. . .+..+++|++|++++|.+... .. ...+++|
T Consensus 62 l~~L~~L~L~~n~i~~~~--~-~~~l~~L~~L~L~~n-~l~~~--~-~~~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L 131 (308)
T 1h6u_A 62 LNNLIGLELKDNQITDLA--P-LKNLTKITELELSGN-PLKNV--S-AIAGLQSIKTLDLTSTQITDV--TP-LAGLSNL 131 (308)
T ss_dssp CTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSC-CCSCC--G-GGTTCTTCCEEECTTSCCCCC--GG-GTTCTTC
T ss_pred cCCCCEEEccCCcCCCCh--h-HccCCCCCEEEccCC-cCCCc--h-hhcCCCCCCEEECCCCCCCCc--hh-hcCCCCC
Confidence 67888888854 333211 1 445888999988866 34432 1 245678888999888866542 12 4557888
Q ss_pred cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhc
Q 021667 163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAER 242 (309)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~ 242 (309)
+.|+++++.+... .. + ..+++|++|++++|.+++-.. +..+++|+.|++++|.... ... ...++ +
T Consensus 132 ~~L~l~~n~l~~~----~~----l-~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~-~~~-l~~l~-~ 196 (308)
T 1h6u_A 132 QVLYLDLNQITNI----SP----L-AGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNKISD-ISP-LASLP-N 196 (308)
T ss_dssp CEEECCSSCCCCC----GG----G-GGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCC-CGG-GGGCT-T
T ss_pred CEEECCCCccCcC----cc----c-cCCCCccEEEccCCcCCCChh---hcCCCCCCEEECCCCccCc-Chh-hcCCC-C
Confidence 8888887655422 11 3 378888888888887764322 4568888888888876443 322 44566 8
Q ss_pred cCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667 243 IRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL 282 (309)
Q Consensus 243 L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~ 282 (309)
|++|++++|.+++.. .+. ..+.+..++++++..
T Consensus 197 L~~L~L~~N~l~~~~--~l~-----~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 197 LIEVHLKNNQISDVS--PLA-----NTSNLFIVTLTNQTI 229 (308)
T ss_dssp CCEEECTTSCCCBCG--GGT-----TCTTCCEEEEEEEEE
T ss_pred CCEEEccCCccCccc--ccc-----CCCCCCEEEccCCee
Confidence 888888888877654 232 455667777766655
No 30
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.04 E-value=7.9e-12 Score=104.94 Aligned_cols=182 Identities=17% Similarity=0.019 Sum_probs=122.1
Q ss_pred CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCC-CCHHHHHHHHhcCCC
Q 021667 84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCS-LSQEALEAVGSLCPL 161 (309)
Q Consensus 84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~ 161 (309)
.+.++.|++.. .++..... ....+++|++|++.++ .++... ...+..+++|++|++++|. +..... .....+++
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~-~~~~~~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~-~~~~~l~~ 106 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAA-SFRACRNLTILWLHSN-VLARID-AAAFTGLALLEQLDLSDNAQLRSVDP-ATFHGLGR 106 (285)
T ss_dssp CTTCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCT-TTTTTCTT
T ss_pred CCCceEEEeeCCcCCccCHH-HcccCCCCCEEECCCC-ccceeC-HhhcCCccCCCEEeCCCCCCccccCH-HHhcCCcC
Confidence 45788888854 33322111 2245899999999965 454321 1234568999999999995 543211 12345899
Q ss_pred CcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHh
Q 021667 162 LRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAE 241 (309)
Q Consensus 162 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~ 241 (309)
|++|++.++.+... . ...+ ..+++|++|++++|.++.... ..+..+++|++|++++|............++
T Consensus 107 L~~L~l~~n~l~~~--~----~~~~-~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~- 177 (285)
T 1ozn_A 107 LHTLHLDRCGLQEL--G----PGLF-RGLAALQYLYLQDNALQALPD-DTFRDLGNLTHLFLHGNRISSVPERAFRGLH- 177 (285)
T ss_dssp CCEEECTTSCCCCC--C----TTTT-TTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCEECTTTTTTCT-
T ss_pred CCEEECCCCcCCEE--C----HhHh-hCCcCCCEEECCCCcccccCH-hHhccCCCccEEECCCCcccccCHHHhcCcc-
Confidence 99999998665422 1 1112 378999999999997764222 1234689999999999865443333345577
Q ss_pred ccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccC
Q 021667 242 RIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELV 283 (309)
Q Consensus 242 ~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~ 283 (309)
+|+.|++++|.+++.....+. ..+.++.++++++...
T Consensus 178 ~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 178 SLDRLLLHQNRVAHVHPHAFR-----DLGRLMTLYLFANNLS 214 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTT-----TCTTCCEEECCSSCCS
T ss_pred ccCEEECCCCcccccCHhHcc-----CcccccEeeCCCCcCC
Confidence 999999999999877665654 5667888888877553
No 31
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.04 E-value=1.1e-11 Score=103.38 Aligned_cols=63 Identities=17% Similarity=0.227 Sum_probs=30.7
Q ss_pred cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCC
Q 021667 189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDST 253 (309)
Q Consensus 189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~ 253 (309)
.+++|++|++++|.++..... .+..+++|++|++++|............++ +|+.|++++|++
T Consensus 155 ~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~~ 217 (270)
T 2o6q_A 155 KLTSLKELRLYNNQLKRVPEG-AFDKLTELKTLKLDNNQLKRVPEGAFDSLE-KLKMLQLQENPW 217 (270)
T ss_dssp TCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCSSCB
T ss_pred CCcccceeEecCCcCcEeChh-HhccCCCcCEEECCCCcCCcCCHHHhcccc-CCCEEEecCCCe
Confidence 455666666666544421111 122455666666665543332222233445 566666666654
No 32
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.03 E-value=4.8e-11 Score=99.51 Aligned_cols=135 Identities=17% Similarity=0.129 Sum_probs=61.1
Q ss_pred cCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHH
Q 021667 107 RSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAI 186 (309)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l 186 (309)
.+++|++|++.++ .++.. ....+..+++|++|++++|.+.... ......+++|+.|+++++.+... . ...
T Consensus 83 ~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~--~-----~~~ 152 (272)
T 3rfs_A 83 ELTNLTYLILTGN-QLQSL-PNGVFDKLTNLKELVLVENQLQSLP-DGVFDKLTNLTYLNLAHNQLQSL--P-----KGV 152 (272)
T ss_dssp TCTTCCEEECTTS-CCCCC-CTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSSCCCCC--C-----TTT
T ss_pred CCCCCCEEECCCC-ccCcc-ChhHhcCCcCCCEEECCCCcCCccC-HHHhccCCCCCEEECCCCccCcc--C-----HHH
Confidence 3556666666544 22211 0112234556666666665443211 11123355666666655443311 0 011
Q ss_pred HhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCC
Q 021667 187 AENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDST 253 (309)
Q Consensus 187 ~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~ 253 (309)
...+++|++|++++|.++.... ..+..+++|++|++++|............++ +|+.|++++|++
T Consensus 153 ~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~~ 217 (272)
T 3rfs_A 153 FDKLTNLTELDLSYNQLQSLPE-GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT-SLQYIWLHDNPW 217 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCSSCB
T ss_pred hccCccCCEEECCCCCcCccCH-HHhcCCccCCEEECCCCcCCccCHHHHhCCc-CCCEEEccCCCc
Confidence 1245566666666665442111 1223455666666665544333223333445 666666666654
No 33
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.02 E-value=7.4e-11 Score=88.99 Aligned_cols=129 Identities=17% Similarity=0.095 Sum_probs=92.5
Q ss_pred CCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHH
Q 021667 134 FPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILD 213 (309)
Q Consensus 134 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~ 213 (309)
.++|++|++++|.+++..+......+++|+.|+++++.+... ..+ ..+++|++|++++|.++.. +...+.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~-~~l~~L~~L~Ls~n~i~~~-~~~~~~ 85 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--------ANL-PKLNKLKKLELSDNRVSGG-LEVLAE 85 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--------TTC-CCCTTCCEEECCSSCCCSC-THHHHH
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--------hhh-hcCCCCCEEECCCCcccch-HHHHhh
Confidence 478999999999876333334446689999999998665421 223 3789999999999988764 445566
Q ss_pred hCCCCCeeecCCCCCcCch-hHHHHHhHhccCceecCCCCCCchhh---hhhhhhhccCCcCCCCCCCC
Q 021667 214 ACPHLESLDLRQCFNVNLV-GKLGKICAERIRDLRHPNDSTHDYEF---GADFQDFCWSSVEDYPSGIS 278 (309)
Q Consensus 214 ~~~~L~~L~l~~c~~~~~~-~~l~~~~~~~L~~L~l~~~~~~d~~~---~~~~~~~c~~~~~l~~~~~s 278 (309)
.+++|++|++++|...+.. ......++ +|++|++++|++++... ..+. ..+.+..+|++
T Consensus 86 ~l~~L~~L~ls~N~i~~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~~~-----~l~~L~~L~l~ 148 (149)
T 2je0_A 86 KCPNLTHLNLSGNKIKDLSTIEPLKKLE-NLKSLDLFNCEVTNLNDYRENVFK-----LLPQLTYLDGY 148 (149)
T ss_dssp HCTTCCEEECTTSCCCSHHHHGGGGGCT-TCCEEECTTCGGGGSTTHHHHHHH-----HCTTCCEETTB
T ss_pred hCCCCCEEECCCCcCCChHHHHHHhhCC-CCCEEeCcCCcccchHHHHHHHHH-----HCCCcccccCC
Confidence 7999999999998754421 14455677 99999999999876643 2333 44566666664
No 34
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.01 E-value=2.3e-10 Score=97.26 Aligned_cols=39 Identities=21% Similarity=0.171 Sum_probs=17.4
Q ss_pred cCCCCcEEEecCCccC--hHHHHHHHHhCCCCCeeecCCCC
Q 021667 189 NMHGLRHLQLFGNELT--NVGLQAILDACPHLESLDLRQCF 227 (309)
Q Consensus 189 ~~~~L~~L~l~~~~i~--~~~l~~l~~~~~~L~~L~l~~c~ 227 (309)
.+++|++|++++|.++ ......++..+++|++|++++|.
T Consensus 195 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~ 235 (310)
T 4glp_A 195 KFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS 235 (310)
T ss_dssp SSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC
T ss_pred cCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC
Confidence 3445555555555444 12222233344555555555444
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.01 E-value=1.2e-10 Score=104.30 Aligned_cols=88 Identities=17% Similarity=0.131 Sum_probs=47.8
Q ss_pred CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHH-HHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCC
Q 021667 84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFC-EAIKGFPLLEELELSYCSLSQEALEAVGSLCPL 161 (309)
Q Consensus 84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 161 (309)
.++|+.|++++ .++......+ ..+++|++|++.++ .++..... ..+..+++|++|+|++|.+.......+...+++
T Consensus 78 l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 155 (455)
T 3v47_A 78 LSSLIILKLDYNQFLQLETGAF-NGLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR 155 (455)
T ss_dssp CTTCCEEECTTCTTCEECTTTT-TTCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT
T ss_pred cccCCEEeCCCCccCccChhhc-cCcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCc
Confidence 45677777753 2222111122 34677777777765 44432222 124456777777777775543322222345677
Q ss_pred CcEEEeccCCCC
Q 021667 162 LRSFKLNNRGHR 173 (309)
Q Consensus 162 L~~L~l~~~~~~ 173 (309)
|+.|+++++.+.
T Consensus 156 L~~L~L~~n~l~ 167 (455)
T 3v47_A 156 FHVLDLTFNKVK 167 (455)
T ss_dssp CCEEECTTCCBS
T ss_pred ccEEeCCCCccc
Confidence 777777765443
No 36
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.01 E-value=1.9e-11 Score=104.80 Aligned_cols=187 Identities=14% Similarity=0.061 Sum_probs=123.0
Q ss_pred ccCCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCC
Q 021667 82 RSNGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCP 160 (309)
Q Consensus 82 ~~~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 160 (309)
.....++.|++.. .++ ..-..+. .+++|++|++.++ .++ .+...+..+++|++|+|++|.+.. +......++
T Consensus 78 ~~~~~l~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~n-~l~--~lp~~~~~l~~L~~L~Ls~n~l~~--lp~~l~~l~ 150 (328)
T 4fcg_A 78 ATQPGRVALELRSVPLP-QFPDQAF-RLSHLQHMTIDAA-GLM--ELPDTMQQFAGLETLTLARNPLRA--LPASIASLN 150 (328)
T ss_dssp HTSTTCCEEEEESSCCS-SCCSCGG-GGTTCSEEEEESS-CCC--CCCSCGGGGTTCSEEEEESCCCCC--CCGGGGGCT
T ss_pred ccccceeEEEccCCCch-hcChhhh-hCCCCCEEECCCC-Ccc--chhHHHhccCCCCEEECCCCcccc--CcHHHhcCc
Confidence 3467899999854 332 1112233 3889999999966 444 233345678999999999996652 222345689
Q ss_pred CCcEEEeccCCCCCCCcccch---hHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHH
Q 021667 161 LLRSFKLNNRGHRCPKIECDD---DAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGK 237 (309)
Q Consensus 161 ~L~~L~l~~~~~~~~~~~~~~---~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~ 237 (309)
+|+.|++++|..... +.... ........+++|++|++++|.++ .+..-+..+++|++|++++|....... ...
T Consensus 151 ~L~~L~L~~n~~~~~-~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~N~l~~l~~-~l~ 226 (328)
T 4fcg_A 151 RLRELSIRACPELTE-LPEPLASTDASGEHQGLVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLSALGP-AIH 226 (328)
T ss_dssp TCCEEEEEEETTCCC-CCSCSEEEC-CCCEEESTTCCEEEEEEECCC--CCCGGGGGCTTCCEEEEESSCCCCCCG-GGG
T ss_pred CCCEEECCCCCCccc-cChhHhhccchhhhccCCCCCEEECcCCCcC--cchHhhcCCCCCCEEEccCCCCCcCch-hhc
Confidence 999999987543321 01000 00000125899999999999776 222235578999999999987665333 345
Q ss_pred HhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccCCC
Q 021667 238 ICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSD 285 (309)
Q Consensus 238 ~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~d 285 (309)
.++ +|+.|++++|.+.......+. ..+.|+.+++++|.....
T Consensus 227 ~l~-~L~~L~Ls~n~~~~~~p~~~~-----~l~~L~~L~L~~n~~~~~ 268 (328)
T 4fcg_A 227 HLP-KLEELDLRGCTALRNYPPIFG-----GRAPLKRLILKDCSNLLT 268 (328)
T ss_dssp GCT-TCCEEECTTCTTCCBCCCCTT-----CCCCCCEEECTTCTTCCB
T ss_pred cCC-CCCEEECcCCcchhhhHHHhc-----CCCCCCEEECCCCCchhh
Confidence 677 999999999987554333343 566788888888766543
No 37
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.00 E-value=6.7e-11 Score=91.12 Aligned_cols=134 Identities=17% Similarity=0.079 Sum_probs=97.8
Q ss_pred cCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHH
Q 021667 133 GFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAIL 212 (309)
Q Consensus 133 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~ 212 (309)
..++|++|++++|.+++..+......+++|+.|+++++.+... ..+ ..+++|++|++++|.++.. +..++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--------~~~-~~l~~L~~L~Ls~N~l~~~-~~~~~ 91 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--------SNL-PKLPKLKKLELSENRIFGG-LDMLA 91 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--------SSC-CCCSSCCEEEEESCCCCSC-CCHHH
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--------hhh-ccCCCCCEEECcCCcCchH-HHHHH
Confidence 3489999999999876333444446689999999998765421 222 3789999999999988754 44556
Q ss_pred HhCCCCCeeecCCCCCcCchh-HHHHHhHhccCceecCCCCCCchhh---hhhhhhhccCCcCCCCCCCCcccc
Q 021667 213 DACPHLESLDLRQCFNVNLVG-KLGKICAERIRDLRHPNDSTHDYEF---GADFQDFCWSSVEDYPSGISDIEL 282 (309)
Q Consensus 213 ~~~~~L~~L~l~~c~~~~~~~-~l~~~~~~~L~~L~l~~~~~~d~~~---~~~~~~~c~~~~~l~~~~~s~~~~ 282 (309)
..+++|++|++++|....... .....++ +|+.|++++|++++... ..+. ..+.+..++++++..
T Consensus 92 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~-~L~~L~l~~N~l~~~~~~~~~~~~-----~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 92 EKLPNLTHLNLSGNKLKDISTLEPLKKLE-CLKSLDLFNCEVTNLNDYRESVFK-----LLPQLTYLDGYDRED 159 (168)
T ss_dssp HHCTTCCEEECBSSSCCSSGGGGGGSSCS-CCCEEECCSSGGGTSTTHHHHHHT-----TCSSCCEETTEETTS
T ss_pred hhCCCCCEEeccCCccCcchhHHHHhcCC-CCCEEEeeCCcCcchHHHHHHHHH-----hCccCcEecCCCCCh
Confidence 679999999999986544221 3445677 99999999999876543 3343 567788888887754
No 38
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.99 E-value=1.2e-09 Score=92.69 Aligned_cols=167 Identities=17% Similarity=0.129 Sum_probs=118.4
Q ss_pred CCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCc
Q 021667 85 GQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLR 163 (309)
Q Consensus 85 ~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~ 163 (309)
+.++.+++.. .++. +.. ...+++|+.|+++++ .++... . +..+++|++|++++|.+... .. ...+++|+
T Consensus 41 ~~L~~L~l~~~~i~~--l~~-~~~l~~L~~L~L~~n-~i~~~~--~-~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~ 110 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT--IEG-VQYLNNLIGLELKDN-QITDLA--P-LKNLTKITELELSGNPLKNV--SA-IAGLQSIK 110 (308)
T ss_dssp HTCCEEECTTSCCCC--CTT-GGGCTTCCEEECCSS-CCCCCG--G-GTTCCSCCEEECCSCCCSCC--GG-GTTCTTCC
T ss_pred CCcCEEEeeCCCccC--chh-hhccCCCCEEEccCC-cCCCCh--h-HccCCCCCEEEccCCcCCCc--hh-hcCCCCCC
Confidence 4677888753 2222 122 345899999999976 454322 1 66789999999999976542 22 45589999
Q ss_pred EEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhcc
Q 021667 164 SFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERI 243 (309)
Q Consensus 164 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L 243 (309)
.|+++++.+... ..+ ..+++|++|++++|.++.... +..+++|++|++++|.... ... ...++ +|
T Consensus 111 ~L~l~~n~l~~~--------~~l-~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~-~~~-l~~l~-~L 175 (308)
T 1h6u_A 111 TLDLTSTQITDV--------TPL-AGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSD-LTP-LANLS-KL 175 (308)
T ss_dssp EEECTTSCCCCC--------GGG-TTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCC-CGG-GTTCT-TC
T ss_pred EEECCCCCCCCc--------hhh-cCCCCCCEEECCCCccCcCcc---ccCCCCccEEEccCCcCCC-Chh-hcCCC-CC
Confidence 999998766432 123 489999999999997774332 5578999999999986544 333 55677 99
Q ss_pred CceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccC
Q 021667 244 RDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELV 283 (309)
Q Consensus 244 ~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~ 283 (309)
+.|++++|.+++... +. ..+.++.++++++...
T Consensus 176 ~~L~l~~n~l~~~~~--l~-----~l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 176 TTLKADDNKISDISP--LA-----SLPNLIEVHLKNNQIS 208 (308)
T ss_dssp CEEECCSSCCCCCGG--GG-----GCTTCCEEECTTSCCC
T ss_pred CEEECCCCccCcChh--hc-----CCCCCCEEEccCCccC
Confidence 999999999876543 32 4567788888777553
No 39
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.98 E-value=7.3e-10 Score=102.38 Aligned_cols=149 Identities=18% Similarity=0.107 Sum_probs=84.4
Q ss_pred CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667 84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL 162 (309)
Q Consensus 84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L 162 (309)
.++|+.|+++. .+++.. . ...+++|+.|.|+++ .++.. . .+..+++|++|+|++|.+... .. ...+++|
T Consensus 64 l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N-~l~~l--~-~l~~l~~L~~L~Ls~N~l~~l--~~-l~~l~~L 133 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTDIK--P-LTNLKNLGWLFLDEN-KIKDL--S-SLKDLKKLKSLSLEHNGISDI--NG-LVHLPQL 133 (605)
T ss_dssp CTTCCEEECTTSCCCCCG--G-GGGCTTCCEEECCSS-CCCCC--T-TSTTCTTCCEEECTTSCCCCC--GG-GGGCTTC
T ss_pred CCCCCEEEeeCCCCCCCh--h-hccCCCCCEEECcCC-CCCCC--h-hhccCCCCCEEEecCCCCCCC--cc-ccCCCcc
Confidence 56677777743 222211 1 335777777777755 33321 1 234567777777777755431 11 3446777
Q ss_pred cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhc
Q 021667 163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAER 242 (309)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~ 242 (309)
+.|+++++.+... ..+. .+++|+.|+|++|.++.... +..+++|+.|+|++|.... ... ...++ +
T Consensus 134 ~~L~Ls~N~l~~l--------~~l~-~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~-l~~-l~~l~-~ 198 (605)
T 1m9s_A 134 ESLYLGNNKITDI--------TVLS-RLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISD-LRA-LAGLK-N 198 (605)
T ss_dssp SEEECCSSCCCCC--------GGGG-SCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCB-CGG-GTTCT-T
T ss_pred CEEECCCCccCCc--------hhhc-ccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCC-ChH-HccCC-C
Confidence 7777776544321 1222 67777777777776654322 4467777777777765333 322 33455 7
Q ss_pred cCceecCCCCCCchh
Q 021667 243 IRDLRHPNDSTHDYE 257 (309)
Q Consensus 243 L~~L~l~~~~~~d~~ 257 (309)
|+.|+|++|++++.+
T Consensus 199 L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 199 LDVLELFSQECLNKP 213 (605)
T ss_dssp CSEEECCSEEEECCC
T ss_pred CCEEEccCCcCcCCc
Confidence 777777777765443
No 40
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.98 E-value=7.8e-10 Score=93.05 Aligned_cols=149 Identities=17% Similarity=0.093 Sum_probs=72.3
Q ss_pred CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667 84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL 162 (309)
Q Consensus 84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L 162 (309)
.++++.|+++. .+++.. . ...+++|+.|+++++ .++.. . .+..+++|++|++++|.+.+- .. ...+++|
T Consensus 67 l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n-~l~~~--~-~l~~l~~L~~L~L~~n~i~~~--~~-l~~l~~L 136 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDEN-KVKDL--S-SLKDLKKLKSLSLEHNGISDI--NG-LVHLPQL 136 (291)
T ss_dssp CTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSS-CCCCG--G-GGTTCTTCCEEECTTSCCCCC--GG-GGGCTTC
T ss_pred CCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCC-cCCCC--h-hhccCCCCCEEECCCCcCCCC--hh-hcCCCCC
Confidence 45566666633 222211 1 234566666666644 33321 1 134456666666666644431 11 2345666
Q ss_pred cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhc
Q 021667 163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAER 242 (309)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~ 242 (309)
+.|+++++.+... ..+. .+++|++|++++|.+++... +..+++|++|++++|.. ++... ...++ +
T Consensus 137 ~~L~l~~n~l~~~--------~~l~-~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i-~~l~~-l~~l~-~ 201 (291)
T 1h6t_A 137 ESLYLGNNKITDI--------TVLS-RLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHI-SDLRA-LAGLK-N 201 (291)
T ss_dssp CEEECCSSCCCCC--------GGGG-GCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCC-CBCGG-GTTCT-T
T ss_pred CEEEccCCcCCcc--------hhhc-cCCCCCEEEccCCccccchh---hcCCCccCEEECCCCcC-CCChh-hccCC-C
Confidence 6666665443311 1122 56666666666665553221 33556666666666543 22322 23345 6
Q ss_pred cCceecCCCCCCchh
Q 021667 243 IRDLRHPNDSTHDYE 257 (309)
Q Consensus 243 L~~L~l~~~~~~d~~ 257 (309)
|+.|++++|++++.+
T Consensus 202 L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 202 LDVLELFSQECLNKP 216 (291)
T ss_dssp CSEEEEEEEEEECCC
T ss_pred CCEEECcCCcccCCc
Confidence 666666666654433
No 41
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.97 E-value=3e-10 Score=96.56 Aligned_cols=182 Identities=19% Similarity=0.129 Sum_probs=117.9
Q ss_pred CCCceEEeccc-cCCh--HHHHHHHhc-CCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHH-HH-HHH-H
Q 021667 84 NGQLLSINIEY-FGTD--ELLQYIANR-SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQE-AL-EAV-G 156 (309)
Q Consensus 84 ~~~l~~l~l~~-~~~~--~~l~~l~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~-~~l-~ 156 (309)
.+.++.|++++ .++. ..+..+... .++|++|+++++ .++.... ..+..+++|++|++++|.+... .+ ..+ .
T Consensus 120 l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSC-EQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp SCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCT-TTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred CCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchH-HHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 57889999854 3332 233333221 489999999976 4432211 2344689999999999976543 22 222 1
Q ss_pred hcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHH
Q 021667 157 SLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLG 236 (309)
Q Consensus 157 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~ 236 (309)
..+++|++|+++++.+.. .......+...+++|++|++++|.++.......+..+++|++|++++|....-...+.
T Consensus 198 ~~l~~L~~L~L~~N~l~~----~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~ 273 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMET----PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP 273 (312)
T ss_dssp TSCTTCCEEECTTSCCCC----HHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC
T ss_pred ccCCCCCEEECCCCcCcc----hHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc
Confidence 568999999999765541 1233445555889999999999987764311223346889999999987553222222
Q ss_pred HHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667 237 KICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL 282 (309)
Q Consensus 237 ~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~ 282 (309)
+ +|+.|++++|.+++... +. ..+.+..+++++...
T Consensus 274 ---~-~L~~L~Ls~N~l~~~p~--~~-----~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 274 ---A-KLSVLDLSYNRLDRNPS--PD-----ELPQVGNLSLKGNPF 308 (312)
T ss_dssp ---S-EEEEEECCSSCCCSCCC--TT-----TSCEEEEEECTTCTT
T ss_pred ---C-CceEEECCCCCCCCChh--Hh-----hCCCCCEEeccCCCC
Confidence 5 89999999999876622 32 456677777776543
No 42
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.97 E-value=8.1e-12 Score=105.96 Aligned_cols=66 Identities=14% Similarity=0.092 Sum_probs=27.2
Q ss_pred cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCch
Q 021667 189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDY 256 (309)
Q Consensus 189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~ 256 (309)
.+++|++|++++|.++..... .+..+++|++|++++|...+........++ +|+.|++++|.+++.
T Consensus 173 ~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 173 ELRNLTFLDLSQCQLEQLSPT-AFNSLSSLQVLNMSHNNFFSLDTFPYKCLN-SLQVLDYSLNHIMTS 238 (306)
T ss_dssp TCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCSBCCSGGGTTCT-TCCEEECTTSCCCBC
T ss_pred hCcCCCEEECCCCCcCCcCHH-HhcCCCCCCEEECCCCccCccChhhccCcc-cCCEeECCCCCCccc
Confidence 344555555555544322111 112344555555554443222111222334 555555555554443
No 43
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.95 E-value=1.5e-11 Score=114.15 Aligned_cols=139 Identities=15% Similarity=0.130 Sum_probs=59.9
Q ss_pred cCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHH
Q 021667 107 RSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAI 186 (309)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l 186 (309)
.+++|+.|++.++. ++.. ...+..+++|++|++++|.+...........+++|+.|+++++.+... ....+
T Consensus 374 ~~~~L~~L~L~~n~-l~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~ 444 (606)
T 3vq2_A 374 GTNSLRHLDLSFNG-AIIM--SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID------FDGIF 444 (606)
T ss_dssp CCSCCCEEECCSCS-EEEE--CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEEC------CTTTT
T ss_pred cCCcccEeECCCCc-cccc--hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCcc------chhhh
Confidence 35555555555442 2110 012233455555555555332211101123355666666655433211 00111
Q ss_pred HhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCch
Q 021667 187 AENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDY 256 (309)
Q Consensus 187 ~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~ 256 (309)
..+++|++|++++|.+++..+...+..+++|++|++++|...+........++ +|++|++++|.+++.
T Consensus 445 -~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~ 512 (606)
T 3vq2_A 445 -LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH-RLQLLNMSHNNLLFL 512 (606)
T ss_dssp -TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCSCE
T ss_pred -cCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccc-cCCEEECCCCcCCCc
Confidence 14555566666555544322222233455555555555543332222223344 555555555555444
No 44
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.95 E-value=1.1e-10 Score=99.34 Aligned_cols=184 Identities=15% Similarity=0.066 Sum_probs=117.8
Q ss_pred cCCCceEEeccc-cCChHHHHHH-HhcCCCccEEEeCCCCCCCHH--HHHHHHh-cCCCcCEEEecCCCCCHHHHHHHHh
Q 021667 83 SNGQLLSINIEY-FGTDELLQYI-ANRSRNLRNLRLVSCYNISDQ--GFCEAIK-GFPLLEELELSYCSLSQEALEAVGS 157 (309)
Q Consensus 83 ~~~~l~~l~l~~-~~~~~~l~~l-~~~~~~L~~L~l~~~~~~~~~--~~~~~~~-~~~~L~~L~L~~~~~~~~~~~~l~~ 157 (309)
....++.|+++. .+++.....+ ...+++|++|+++++ .++.. .+..+.. ..++|++|+|++|.+....... ..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~-~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ-VR 170 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTT-CC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHH-hc
Confidence 367899999854 3332222222 256899999999976 44432 2222221 1389999999999765432222 24
Q ss_pred cCCCCcEEEeccCCCCCCCcccch-hHHHH-HhcCCCCcEEEecCCccCh--HHHHHHHHhCCCCCeeecCCCCCcCch-
Q 021667 158 LCPLLRSFKLNNRGHRCPKIECDD-DAKAI-AENMHGLRHLQLFGNELTN--VGLQAILDACPHLESLDLRQCFNVNLV- 232 (309)
Q Consensus 158 ~~~~L~~L~l~~~~~~~~~~~~~~-~~~~l-~~~~~~L~~L~l~~~~i~~--~~l~~l~~~~~~L~~L~l~~c~~~~~~- 232 (309)
.+++|+.|+++++.+. ... ....+ ...+++|++|++++|.++. .....++..+++|++|++++|......
T Consensus 171 ~l~~L~~L~Ls~N~l~-----~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 245 (312)
T 1wwl_A 171 VFPALSTLDLSDNPEL-----GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245 (312)
T ss_dssp CCSSCCEEECCSCTTC-----HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC
T ss_pred cCCCCCEEECCCCCcC-----cchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc
Confidence 5899999999975432 111 12222 1488999999999998883 344566678899999999998765532
Q ss_pred hHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667 233 GKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL 282 (309)
Q Consensus 233 ~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~ 282 (309)
.......+ +|+.|++++|.++.... . . . +.++.+|+++...
T Consensus 246 ~~~~~~l~-~L~~L~Ls~N~l~~ip~--~---~--~-~~L~~L~Ls~N~l 286 (312)
T 1wwl_A 246 APSCDWPS-QLNSLNLSFTGLKQVPK--G---L--P-AKLSVLDLSYNRL 286 (312)
T ss_dssp CSCCCCCT-TCCEEECTTSCCSSCCS--S---C--C-SEEEEEECCSSCC
T ss_pred hhhhhhcC-CCCEEECCCCccChhhh--h---c--c-CCceEEECCCCCC
Confidence 12223346 99999999999873211 1 1 1 4566677776644
No 45
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.94 E-value=6.1e-11 Score=100.77 Aligned_cols=180 Identities=19% Similarity=0.125 Sum_probs=115.9
Q ss_pred CCCceEEeccc-cCChH----HHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHH-HHHH--H
Q 021667 84 NGQLLSINIEY-FGTDE----LLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQE-ALEA--V 155 (309)
Q Consensus 84 ~~~l~~l~l~~-~~~~~----~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~--l 155 (309)
.+.++.|+++. .++.. ....+. .+++|++|+++++ .++.. ....+..+++|++|+|++|.+... ++.. .
T Consensus 116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~~~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 192 (310)
T 4glp_A 116 GLALSSLRLRNVSWATGRSWLAELQQW-LKPGLKVLSIAQA-HSPAF-SCEQVRAFPALTSLDLSDNPGLGERGLMAALC 192 (310)
T ss_dssp CBCCSSCEEESCCCSSTTSSHHHHHTT-BCSCCCEEEEECC-SSCCC-CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSC
T ss_pred CCCCCEEEeecccccchhhhhHHHHhh-hccCCCEEEeeCC-Ccchh-hHHHhccCCCCCEEECCCCCCccchhhhHHHh
Confidence 56788888854 33321 112223 5899999999976 44321 112344689999999999976543 2221 1
Q ss_pred HhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhC---CCCCeeecCCCCCcCch
Q 021667 156 GSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDAC---PHLESLDLRQCFNVNLV 232 (309)
Q Consensus 156 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~---~~L~~L~l~~c~~~~~~ 232 (309)
...+++|++|+++++.+.. .......+...+++|++|++++|.++......+. .+ ++|++|++++|....-.
T Consensus 193 ~~~l~~L~~L~Ls~N~l~~----l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~-~~~~~~~L~~L~Ls~N~l~~lp 267 (310)
T 4glp_A 193 PHKFPAIQNLALRNTGMET----PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAP-RCMWSSALNSLNLSFAGLEQVP 267 (310)
T ss_dssp TTSSCCCCSCBCCSSCCCC----HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCS-SCCCCTTCCCEECCSSCCCSCC
T ss_pred hhcCCCCCEEECCCCCCCc----hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHH-hccCcCcCCEEECCCCCCCchh
Confidence 2467899999999866541 1233334445889999999999987754211111 23 78999999988765332
Q ss_pred hHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667 233 GKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL 282 (309)
Q Consensus 233 ~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~ 282 (309)
..+ ++ +|+.|++++|.++.... +. ..+.+..+++++...
T Consensus 268 ~~~---~~-~L~~L~Ls~N~l~~~~~--~~-----~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 268 KGL---PA-KLRVLDLSSNRLNRAPQ--PD-----ELPEVDNLTLDGNPF 306 (310)
T ss_dssp SCC---CS-CCSCEECCSCCCCSCCC--TT-----SCCCCSCEECSSTTT
T ss_pred hhh---cC-CCCEEECCCCcCCCCch--hh-----hCCCccEEECcCCCC
Confidence 222 25 99999999999875422 22 456778888876644
No 46
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.94 E-value=1.3e-11 Score=113.69 Aligned_cols=140 Identities=18% Similarity=0.107 Sum_probs=70.2
Q ss_pred cCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHH
Q 021667 133 GFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAIL 212 (309)
Q Consensus 133 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~ 212 (309)
.+++|++|++++|.+...........+++|+.|+++++.+... .......+++|++|++++|.+++..+...+
T Consensus 394 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~ 466 (570)
T 2z63_A 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-------FNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466 (570)
T ss_dssp TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEEC-------CTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccccc-------chhhhhcCCcCcEEECcCCcCccccchhhh
Confidence 3455555555554322111111123455666666655433211 011112566777777777765532222334
Q ss_pred HhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccCCC
Q 021667 213 DACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSD 285 (309)
Q Consensus 213 ~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~d 285 (309)
..+++|++|++++|............++ +|+.|++++|.+++.....+. ..+.+..+++++.....+
T Consensus 467 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 467 TELRNLTFLDLSQCQLEQLSPTAFNSLS-SLQVLNMASNQLKSVPDGIFD-----RLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCTTTTT-----TCTTCCEEECCSSCBCCC
T ss_pred hcccCCCEEECCCCccccCChhhhhccc-CCCEEeCCCCcCCCCCHHHhh-----cccCCcEEEecCCcccCC
Confidence 4566777777776654433223334456 777777777776655443343 445566666666554433
No 47
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.93 E-value=1.4e-10 Score=100.31 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=18.5
Q ss_pred cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCC
Q 021667 189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCF 227 (309)
Q Consensus 189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 227 (309)
.+++|++|++++|.++... ..+...+++|+.|++++|.
T Consensus 196 ~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 196 SIQNVSHLILHMKQHILLL-EIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp TCSEEEEEEEECSCSTTHH-HHHHHHTTTEEEEEEESCB
T ss_pred ccccCCeecCCCCccccch-hhhhhhcccccEEECCCCc
Confidence 4455555555555443221 2223345566666665554
No 48
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.93 E-value=4.3e-11 Score=99.95 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=17.6
Q ss_pred cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCC
Q 021667 189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCF 227 (309)
Q Consensus 189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 227 (309)
.+++|++|++++|.++...+...+..+++|++|++++|.
T Consensus 122 ~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC
Confidence 445555555555544332222223344555555555544
No 49
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.92 E-value=5.4e-09 Score=95.69 Aligned_cols=82 Identities=10% Similarity=-0.018 Sum_probs=46.3
Q ss_pred CCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCc
Q 021667 191 HGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSV 270 (309)
Q Consensus 191 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~ 270 (309)
++|++|++++|.++.. ...+++|++|++++|.... +.. ...++ +|+.|++++|.+++.....+. ..+
T Consensus 431 ~~L~~L~Ls~N~l~~~-----~~~l~~L~~L~Ls~N~l~~-ip~-~~~l~-~L~~L~Ls~N~l~~~~~~~~~-----~l~ 497 (549)
T 2z81_A 431 QTLEVLDVSNNNLDSF-----SLFLPRLQELYISRNKLKT-LPD-ASLFP-VLLVMKISRNQLKSVPDGIFD-----RLT 497 (549)
T ss_dssp TTCSEEECCSSCCSCC-----CCCCTTCCEEECCSSCCSS-CCC-GGGCT-TCCEEECCSSCCCCCCTTGGG-----GCT
T ss_pred CCceEEECCCCChhhh-----cccCChhcEEECCCCccCc-CCC-cccCc-cCCEEecCCCccCCcCHHHHh-----cCc
Confidence 3555555555554431 1356677777777765432 222 12455 777777777777654433343 345
Q ss_pred CCCCCCCCccccCCC
Q 021667 271 EDYPSGISDIELVSD 285 (309)
Q Consensus 271 ~l~~~~~s~~~~~~d 285 (309)
.+..++++++.+.-+
T Consensus 498 ~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 498 SLQKIWLHTNPWDCS 512 (549)
T ss_dssp TCCEEECCSSCBCCC
T ss_pred ccCEEEecCCCccCC
Confidence 666677776665433
No 50
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.92 E-value=4.4e-10 Score=93.63 Aligned_cols=180 Identities=18% Similarity=0.077 Sum_probs=122.1
Q ss_pred CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667 84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL 162 (309)
Q Consensus 84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L 162 (309)
...++.+.+.. .+++ +.. ...+++|++|++.++ .++.. ..+..+++|++|++++|.++... ......+++|
T Consensus 40 l~~L~~L~l~~~~i~~--~~~-l~~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L 111 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS--VQG-IQYLPNVRYLALGGN-KLHDI---SALKELTNLTYLILTGNQLQSLP-NGVFDKLTNL 111 (272)
T ss_dssp HTTCCEEECTTSCCCC--CTT-GGGCTTCCEEECTTS-CCCCC---GGGTTCTTCCEEECTTSCCCCCC-TTTTTTCTTC
T ss_pred ccceeeeeeCCCCccc--ccc-cccCCCCcEEECCCC-CCCCc---hhhcCCCCCCEEECCCCccCccC-hhHhcCCcCC
Confidence 35778888754 2222 112 335899999999976 44432 13557899999999999665321 1223458999
Q ss_pred cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhc
Q 021667 163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAER 242 (309)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~ 242 (309)
++|+++++.+... . ......+++|++|++++|.++.... ..+..+++|+.|++++|............++ +
T Consensus 112 ~~L~L~~n~l~~~--~-----~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~ 182 (272)
T 3rfs_A 112 KELVLVENQLQSL--P-----DGVFDKLTNLTYLNLAHNQLQSLPK-GVFDKLTNLTELDLSYNQLQSLPEGVFDKLT-Q 182 (272)
T ss_dssp CEEECTTSCCCCC--C-----TTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-T
T ss_pred CEEECCCCcCCcc--C-----HHHhccCCCCCEEECCCCccCccCH-HHhccCccCCEEECCCCCcCccCHHHhcCCc-c
Confidence 9999998765422 1 1112378999999999997763221 2234689999999999875544444445677 9
Q ss_pred cCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccCCC
Q 021667 243 IRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSD 285 (309)
Q Consensus 243 L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~d 285 (309)
|+.|++++|.+++.....+. ..+.+..+++++.....+
T Consensus 183 L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 183 LKDLRLYQNQLKSVPDGVFD-----RLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp CCEEECCSSCCSCCCTTTTT-----TCTTCCEEECCSSCBCCC
T ss_pred CCEEECCCCcCCccCHHHHh-----CCcCCCEEEccCCCcccc
Confidence 99999999998765544443 556788888887766544
No 51
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.92 E-value=4.2e-11 Score=111.13 Aligned_cols=86 Identities=20% Similarity=0.053 Sum_probs=36.2
Q ss_pred cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCc---hhHHHHHhHhccCceecCCCCCCchhhhhhhhhh
Q 021667 189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNL---VGKLGKICAERIRDLRHPNDSTHDYEFGADFQDF 265 (309)
Q Consensus 189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~---~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~ 265 (309)
.+++|++|++++|.++..... .+..+++|++|++++|...+. .......++ +|+.|++++|.+++.....+.
T Consensus 423 ~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~--- 497 (606)
T 3t6q_A 423 NLHLLKVLNLSHSLLDISSEQ-LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG-RLEILVLSFCDLSSIDQHAFT--- 497 (606)
T ss_dssp TCTTCCEEECTTCCCBTTCTT-TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCT-TCCEEECTTSCCCEECTTTTT---
T ss_pred CcccCCEEECCCCccCCcCHH-HHhCCCCCCEEECCCCCCCccccccchhhccCC-CccEEECCCCccCccChhhhc---
Confidence 344444444444433321111 122344555555555443221 001223344 555555555555444333332
Q ss_pred ccCCcCCCCCCCCccc
Q 021667 266 CWSSVEDYPSGISDIE 281 (309)
Q Consensus 266 c~~~~~l~~~~~s~~~ 281 (309)
..+.++.++++++.
T Consensus 498 --~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 498 --SLKMMNHVDLSHNR 511 (606)
T ss_dssp --TCTTCCEEECCSSC
T ss_pred --cccCCCEEECCCCc
Confidence 34455555555553
No 52
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.91 E-value=3.9e-09 Score=94.80 Aligned_cols=82 Identities=16% Similarity=0.111 Sum_probs=34.4
Q ss_pred cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccC
Q 021667 189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWS 268 (309)
Q Consensus 189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~ 268 (309)
.+++|+.|++++|.+++... +..+++|+.|++++|.... .. -...++ +|+.|++++|++++... +. .
T Consensus 307 ~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~-~~-~l~~l~-~L~~L~l~~n~l~~~~~--~~-----~ 373 (466)
T 1o6v_A 307 NLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSD-VS-SLANLT-NINWLSAGHNQISDLTP--LA-----N 373 (466)
T ss_dssp GCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCC-CG-GGTTCT-TCCEEECCSSCCCBCGG--GT-----T
T ss_pred CCCCCCEEECcCCcCCCchh---hccCccCCEeECCCCccCC-ch-hhccCC-CCCEEeCCCCccCccch--hh-----c
Confidence 34444444444443332211 2234444444444443222 11 122334 55555555555443322 21 3
Q ss_pred CcCCCCCCCCccccC
Q 021667 269 SVEDYPSGISDIELV 283 (309)
Q Consensus 269 ~~~l~~~~~s~~~~~ 283 (309)
.+.+..++++++...
T Consensus 374 l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 374 LTRITQLGLNDQAWT 388 (466)
T ss_dssp CTTCCEEECCCEEEE
T ss_pred CCCCCEEeccCCccc
Confidence 445555556555443
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.89 E-value=3.3e-11 Score=102.17 Aligned_cols=182 Identities=17% Similarity=0.073 Sum_probs=95.4
Q ss_pred CCCceEEeccc-cCChHH--HHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCC
Q 021667 84 NGQLLSINIEY-FGTDEL--LQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCP 160 (309)
Q Consensus 84 ~~~l~~l~l~~-~~~~~~--l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 160 (309)
.++++.|++.. .++... ...+. .+++|++|+++++ .++. +...+..+++|++|+++++.+...........++
T Consensus 51 l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~L~~L~Ls~n-~i~~--l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 126 (306)
T 2z66_A 51 LTQLTKLSLSSNGLSFKGCCSQSDF-GTTSLKYLDLSFN-GVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 126 (306)
T ss_dssp CTTCSEEECCSSCCCEEEEEEHHHH-SCSCCCEEECCSC-SEEE--EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCT
T ss_pred cccCCEEECCCCccCcccCcccccc-cccccCEEECCCC-cccc--ChhhcCCCCCCCEEECCCCcccccccchhhhhcc
Confidence 45677777643 232110 11122 3677777777755 2221 1111334677777777777443221111234467
Q ss_pred CCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhH
Q 021667 161 LLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICA 240 (309)
Q Consensus 161 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~ 240 (309)
+|+.|+++++.+... .......+++|++|++++|.++...+...+..+++|++|++++|............++
T Consensus 127 ~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 199 (306)
T 2z66_A 127 NLIYLDISHTHTRVA-------FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 199 (306)
T ss_dssp TCCEEECTTSCCEEC-------STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred CCCEEECCCCcCCcc-------chhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC
Confidence 777777776443211 0111125677777777777665432333344567777777777654333223334455
Q ss_pred hccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667 241 ERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL 282 (309)
Q Consensus 241 ~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~ 282 (309)
+|++|++++|.+++.....+. ..+.++.+|++++..
T Consensus 200 -~L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 200 -SLQVLNMSHNNFFSLDTFPYK-----CLNSLQVLDYSLNHI 235 (306)
T ss_dssp -TCCEEECTTSCCSBCCSGGGT-----TCTTCCEEECTTSCC
T ss_pred -CCCEEECCCCccCccChhhcc-----CcccCCEeECCCCCC
Confidence 777777777776655443333 344566666665544
No 54
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.89 E-value=1.6e-10 Score=95.18 Aligned_cols=159 Identities=12% Similarity=0.064 Sum_probs=106.5
Q ss_pred CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667 84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL 162 (309)
Q Consensus 84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L 162 (309)
.+.++.|++.. .++... ......+++|++|+++++ .++... ...+..+++|++|+|++|.++... ......+++|
T Consensus 34 ~~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L 109 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLS-DATFRGLTKLTWLNLDYN-QLQTLS-AGVFDDLTELGTLGLANNQLASLP-LGVFDHLTQL 109 (251)
T ss_dssp CTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTC
T ss_pred CCCCCEEEccCCCcCccC-HhHhcCcccCCEEECCCC-cCCccC-HhHhccCCcCCEEECCCCcccccC-hhHhcccCCC
Confidence 35788999854 332211 112335899999999975 444311 123456899999999999765321 1223568999
Q ss_pred cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhc
Q 021667 163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAER 242 (309)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~ 242 (309)
+.|+++++.+... . ......+++|++|++++|.++.-.. ..+..+++|++|++++|............++ +
T Consensus 110 ~~L~L~~N~l~~~--~-----~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~ 180 (251)
T 3m19_A 110 DKLYLGGNQLKSL--P-----SGVFDRLTKLKELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG-K 180 (251)
T ss_dssp CEEECCSSCCCCC--C-----TTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-T
T ss_pred CEEEcCCCcCCCc--C-----hhHhccCCcccEEECcCCcCCccCH-HHcCcCcCCCEEECCCCcCCccCHHHHhCCC-C
Confidence 9999998766422 1 1112378999999999997763222 1234688999999999876554433445667 9
Q ss_pred cCceecCCCCCCc
Q 021667 243 IRDLRHPNDSTHD 255 (309)
Q Consensus 243 L~~L~l~~~~~~d 255 (309)
|+.|++++|+++.
T Consensus 181 L~~L~l~~N~~~c 193 (251)
T 3m19_A 181 LQTITLFGNQFDC 193 (251)
T ss_dssp CCEEECCSCCBCT
T ss_pred CCEEEeeCCceeC
Confidence 9999999999754
No 55
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.89 E-value=4.9e-11 Score=107.50 Aligned_cols=133 Identities=20% Similarity=0.091 Sum_probs=57.2
Q ss_pred CCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHH
Q 021667 108 SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIA 187 (309)
Q Consensus 108 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 187 (309)
+++|++|+|.++ .++... ...+..+++|++|+|++|.+..... .....+++|+.|++.++.+... ....+.
T Consensus 79 l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~------~~~~~~ 149 (477)
T 2id5_A 79 LFNLRTLGLRSN-RLKLIP-LGVFTGLSNLTKLDISENKIVILLD-YMFQDLYNLKSLEVGDNDLVYI------SHRAFS 149 (477)
T ss_dssp CTTCCEEECCSS-CCCSCC-TTSSTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEEECCTTCCEE------CTTSST
T ss_pred CccCCEEECCCC-cCCccC-cccccCCCCCCEEECCCCccccCCh-hHccccccCCEEECCCCcccee------Chhhcc
Confidence 455555555543 222110 0112334555555555554432111 1113355555555554332210 001111
Q ss_pred hcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCC
Q 021667 188 ENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDS 252 (309)
Q Consensus 188 ~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~ 252 (309)
.+++|++|++++|.++.... ..+..+++|+.|+++++............++ +|+.|++++|+
T Consensus 150 -~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~~~ 211 (477)
T 2id5_A 150 -GLNSLEQLTLEKCNLTSIPT-EALSHLHGLIVLRLRHLNINAIRDYSFKRLY-RLKVLEISHWP 211 (477)
T ss_dssp -TCTTCCEEEEESCCCSSCCH-HHHTTCTTCCEEEEESCCCCEECTTCSCSCT-TCCEEEEECCT
T ss_pred -CCCCCCEEECCCCcCcccCh-hHhcccCCCcEEeCCCCcCcEeChhhcccCc-ccceeeCCCCc
Confidence 45566666666654443221 1223455666666655543332222223344 56666666655
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.88 E-value=8.3e-11 Score=104.92 Aligned_cols=82 Identities=18% Similarity=0.081 Sum_probs=36.8
Q ss_pred CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667 84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL 162 (309)
Q Consensus 84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L 162 (309)
.++|+.|+++. .++.... .....+++|++|+|+++ .++... ...+..+++|++|+|++|.+..... .....+++|
T Consensus 87 l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L 162 (440)
T 3zyj_A 87 LRHLEILQLSRNHIRTIEI-GAFNGLANLNTLELFDN-RLTTIP-NGAFVYLSKLKELWLRNNPIESIPS-YAFNRIPSL 162 (440)
T ss_dssp CSSCCEEECCSSCCCEECG-GGGTTCSSCCEEECCSS-CCSSCC-TTTSCSCSSCCEEECCSCCCCEECT-TTTTTCTTC
T ss_pred CCCCCEEECCCCcCCccCh-hhccCCccCCEEECCCC-cCCeeC-HhHhhccccCceeeCCCCcccccCH-HHhhhCccc
Confidence 45566666643 2222111 11233666777777654 333110 1123345666666666664432110 112234555
Q ss_pred cEEEecc
Q 021667 163 RSFKLNN 169 (309)
Q Consensus 163 ~~L~l~~ 169 (309)
+.|++.+
T Consensus 163 ~~L~l~~ 169 (440)
T 3zyj_A 163 RRLDLGE 169 (440)
T ss_dssp CEEECCC
T ss_pred CEeCCCC
Confidence 5555543
No 57
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.88 E-value=3.4e-09 Score=89.10 Aligned_cols=169 Identities=15% Similarity=0.073 Sum_probs=121.4
Q ss_pred CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667 84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL 162 (309)
Q Consensus 84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L 162 (309)
.+.++.+++.. .+++- .. ...+++|+.|+++++ .++... . +..+++|+.|++++|.+... .. ...+++|
T Consensus 45 l~~L~~L~l~~~~i~~~--~~-~~~l~~L~~L~L~~n-~l~~~~--~-l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L 114 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV--QG-IQYLPNVTKLFLNGN-KLTDIK--P-LANLKNLGWLFLDENKVKDL--SS-LKDLKKL 114 (291)
T ss_dssp HHTCCEEECTTSCCCCC--TT-GGGCTTCCEEECCSS-CCCCCG--G-GTTCTTCCEEECCSSCCCCG--GG-GTTCTTC
T ss_pred cCcccEEEccCCCcccC--hh-HhcCCCCCEEEccCC-ccCCCc--c-cccCCCCCEEECCCCcCCCC--hh-hccCCCC
Confidence 34678888854 22221 22 345899999999976 454321 1 66789999999999977652 22 4568999
Q ss_pred cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhc
Q 021667 163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAER 242 (309)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~ 242 (309)
+.|+++++.+... ..+. .+++|++|++++|.++.- ..+..+++|+.|++++|..... .. ...++ +
T Consensus 115 ~~L~L~~n~i~~~--------~~l~-~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~~-~~-l~~l~-~ 179 (291)
T 1h6t_A 115 KSLSLEHNGISDI--------NGLV-HLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDI-VP-LAGLT-K 179 (291)
T ss_dssp CEEECTTSCCCCC--------GGGG-GCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCC-GG-GTTCT-T
T ss_pred CEEECCCCcCCCC--------hhhc-CCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCccccc-hh-hcCCC-c
Confidence 9999998766432 2233 889999999999988764 3455789999999999865443 33 55677 9
Q ss_pred cCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccCC
Q 021667 243 IRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVS 284 (309)
Q Consensus 243 L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~ 284 (309)
|+.|++++|.+++.. .+. ..+.+..++++++....
T Consensus 180 L~~L~L~~N~i~~l~--~l~-----~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 180 LQNLYLSKNHISDLR--ALA-----GLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCEEECCSSCCCBCG--GGT-----TCTTCSEEEEEEEEEEC
T ss_pred cCEEECCCCcCCCCh--hhc-----cCCCCCEEECcCCcccC
Confidence 999999999998753 233 56678888888776543
No 58
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.88 E-value=2.2e-09 Score=88.93 Aligned_cols=127 Identities=23% Similarity=0.219 Sum_probs=62.0
Q ss_pred cCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHH
Q 021667 107 RSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAI 186 (309)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l 186 (309)
.+++|+.|+++++ .++.... +..+++|++|++++|.++.- ..+.. ++|+.|+++++.+... ..+
T Consensus 61 ~l~~L~~L~L~~N-~i~~~~~---l~~l~~L~~L~L~~N~l~~l--~~~~~--~~L~~L~L~~N~l~~~--------~~l 124 (263)
T 1xeu_A 61 FFTNLKELHLSHN-QISDLSP---LKDLTKLEELSVNRNRLKNL--NGIPS--ACLSRLFLDNNELRDT--------DSL 124 (263)
T ss_dssp GCTTCCEEECCSS-CCCCCGG---GTTCSSCCEEECCSSCCSCC--TTCCC--SSCCEEECCSSCCSBS--------GGG
T ss_pred hCCCCCEEECCCC-ccCCChh---hccCCCCCEEECCCCccCCc--Ccccc--CcccEEEccCCccCCC--------hhh
Confidence 3566666666644 3332111 34556666666666644321 11111 5566666665443311 112
Q ss_pred HhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCch
Q 021667 187 AENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDY 256 (309)
Q Consensus 187 ~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~ 256 (309)
. .+++|+.|++++|.+++-. .+..+++|+.|++++|..... .....++ +|+.|++++|+++..
T Consensus 125 ~-~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~--~~l~~l~-~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 125 I-HLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNT--GGLTRLK-KVNWIDLTGQKCVNE 187 (263)
T ss_dssp T-TCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBC--TTSTTCC-CCCEEEEEEEEEECC
T ss_pred c-CcccccEEECCCCcCCCCh---HHccCCCCCEEECCCCcCcch--HHhccCC-CCCEEeCCCCcccCC
Confidence 2 5666666666666555421 233456666666666543332 2223344 566666666665433
No 59
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.87 E-value=6.6e-10 Score=99.36 Aligned_cols=136 Identities=15% Similarity=0.021 Sum_probs=71.8
Q ss_pred CCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHh
Q 021667 135 PLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDA 214 (309)
Q Consensus 135 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~ 214 (309)
++|++|++++|.+.... ......+++|+.|+++++.+... ....+. .+++|++|++++|.++..... .+..
T Consensus 275 ~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~------~~~~~~-~l~~L~~L~Ls~N~l~~~~~~-~~~~ 345 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALL-KSVFSHFTDLEQLTLAQNEINKI------DDNAFW-GLTHLLKLNLSQNFLGSIDSR-MFEN 345 (455)
T ss_dssp SCCCEEECCSSCCCEEC-TTTTTTCTTCCEEECTTSCCCEE------CTTTTT-TCTTCCEEECCSSCCCEECGG-GGTT
T ss_pred cCceEEEecCccccccc-hhhcccCCCCCEEECCCCccccc------ChhHhc-CcccCCEEECCCCccCCcChh-HhcC
Confidence 45666666666444321 11123456677777765443311 111122 566777777777765432211 2235
Q ss_pred CCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccCCC
Q 021667 215 CPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSD 285 (309)
Q Consensus 215 ~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~d 285 (309)
+++|++|++++|............++ +|++|++++|.+++.....+. ..+.++.+++++.....+
T Consensus 346 l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 346 LDKLEVLDLSYNHIRALGDQSFLGLP-NLKELALDTNQLKSVPDGIFD-----RLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCTTTTT-----TCTTCCEEECCSSCBCCC
T ss_pred cccCCEEECCCCcccccChhhccccc-cccEEECCCCccccCCHhHhc-----cCCcccEEEccCCCcccC
Confidence 67777777777654332223334456 777777777776654443333 445666666666655443
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.87 E-value=1.2e-10 Score=104.27 Aligned_cols=63 Identities=14% Similarity=0.075 Sum_probs=26.7
Q ss_pred cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCc
Q 021667 189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHD 255 (309)
Q Consensus 189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d 255 (309)
.+++|++|++++|.++.- .. +..+++|+.|++++|............++ +|+.|++++|.++.
T Consensus 194 ~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~n~l~~ 256 (452)
T 3zyi_A 194 GLFNLKYLNLGMCNIKDM--PN-LTPLVGLEELEMSGNHFPEIRPGSFHGLS-SLKKLWVMNSQVSL 256 (452)
T ss_dssp TCTTCCEEECTTSCCSSC--CC-CTTCTTCCEEECTTSCCSEECGGGGTTCT-TCCEEECTTSCCCE
T ss_pred CCCCCCEEECCCCccccc--cc-ccccccccEEECcCCcCcccCcccccCcc-CCCEEEeCCCcCce
Confidence 445555555555544321 01 22344455555555443322222223334 44555555444443
No 61
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.86 E-value=6.7e-09 Score=93.25 Aligned_cols=167 Identities=17% Similarity=0.091 Sum_probs=92.2
Q ss_pred CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667 84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL 162 (309)
Q Consensus 84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L 162 (309)
.+.++.+++.. .+++.. . ...+++|+.|++.++ .++.. ..+..+++|++|++++|.+..... ...+++|
T Consensus 198 l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L 267 (466)
T 1o6v_A 198 LTNLESLIATNNQISDIT--P-LGILTNLDELSLNGN-QLKDI---GTLASLTNLTDLDLANNQISNLAP---LSGLTKL 267 (466)
T ss_dssp CTTCSEEECCSSCCCCCG--G-GGGCTTCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTC
T ss_pred CCCCCEEEecCCcccccc--c-ccccCCCCEEECCCC-Ccccc---hhhhcCCCCCEEECCCCccccchh---hhcCCCC
Confidence 46677777743 222211 1 234677777777755 33321 123456777777777775543211 3456777
Q ss_pred cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhc
Q 021667 163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAER 242 (309)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~ 242 (309)
+.|+++++.+... . .+ ..+++|+.|++++|.++.... +..+++|+.|++++|...+.. . ...++ +
T Consensus 268 ~~L~l~~n~l~~~----~----~~-~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~-~-~~~l~-~ 332 (466)
T 1o6v_A 268 TELKLGANQISNI----S----PL-AGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISDIS-P-VSSLT-K 332 (466)
T ss_dssp SEEECCSSCCCCC----G----GG-TTCTTCSEEECCSSCCSCCGG---GGGCTTCSEEECCSSCCSCCG-G-GGGCT-T
T ss_pred CEEECCCCccCcc----c----cc-cCCCccCeEEcCCCcccCchh---hcCCCCCCEEECcCCcCCCch-h-hccCc-c
Confidence 7777776544321 1 12 266777777777775553221 345677777777776543322 2 34555 7
Q ss_pred cCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667 243 IRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL 282 (309)
Q Consensus 243 L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~ 282 (309)
|+.|++++|.+++. ..+. ..+.++.++++++..
T Consensus 333 L~~L~l~~n~l~~~--~~l~-----~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 333 LQRLFFYNNKVSDV--SSLA-----NLTNINWLSAGHNQI 365 (466)
T ss_dssp CCEEECCSSCCCCC--GGGT-----TCTTCCEEECCSSCC
T ss_pred CCEeECCCCccCCc--hhhc-----cCCCCCEEeCCCCcc
Confidence 77777777776654 2222 445566666665543
No 62
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.86 E-value=1.5e-10 Score=104.24 Aligned_cols=181 Identities=15% Similarity=0.018 Sum_probs=87.1
Q ss_pred CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667 84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL 162 (309)
Q Consensus 84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L 162 (309)
.++|+.|++.. .++.. .......+++|++|+|+++ .++.. ....+..+++|++|+|++|.+....... ...+++|
T Consensus 79 l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L 154 (477)
T 2id5_A 79 LFNLRTLGLRSNRLKLI-PLGVFTGLSNLTKLDISEN-KIVIL-LDYMFQDLYNLKSLEVGDNDLVYISHRA-FSGLNSL 154 (477)
T ss_dssp CTTCCEEECCSSCCCSC-CTTSSTTCTTCCEEECTTS-CCCEE-CTTTTTTCTTCCEEEECCTTCCEECTTS-STTCTTC
T ss_pred CccCCEEECCCCcCCcc-CcccccCCCCCCEEECCCC-ccccC-ChhHccccccCCEEECCCCccceeChhh-ccCCCCC
Confidence 45666666643 22211 1111234667777777654 33211 0112345666667766666443221111 1235666
Q ss_pred cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCC------------------------C
Q 021667 163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPH------------------------L 218 (309)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~------------------------L 218 (309)
+.|++.++.+... ....+. .+++|+.|++.+|.++..... .+..+++ |
T Consensus 155 ~~L~l~~n~l~~~------~~~~l~-~l~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 226 (477)
T 2id5_A 155 EQLTLEKCNLTSI------PTEALS-HLHGLIVLRLRHLNINAIRDY-SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226 (477)
T ss_dssp CEEEEESCCCSSC------CHHHHT-TCTTCCEEEEESCCCCEECTT-CSCSCTTCCEEEEECCTTCCEECTTTTTTCCC
T ss_pred CEEECCCCcCccc------ChhHhc-ccCCCcEEeCCCCcCcEeChh-hcccCcccceeeCCCCccccccCcccccCccc
Confidence 6666665443311 111222 556666666666544321111 1123444 4
Q ss_pred CeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667 219 ESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL 282 (309)
Q Consensus 219 ~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~ 282 (309)
+.|++++|............++ +|+.|+|++|.++......+. ..+.|+.++++++..
T Consensus 227 ~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l 284 (477)
T 2id5_A 227 TSLSITHCNLTAVPYLAVRHLV-YLRFLNLSYNPISTIEGSMLH-----ELLRLQEIQLVGGQL 284 (477)
T ss_dssp SEEEEESSCCCSCCHHHHTTCT-TCCEEECCSSCCCEECTTSCT-----TCTTCCEEECCSSCC
T ss_pred cEEECcCCcccccCHHHhcCcc-ccCeeECCCCcCCccChhhcc-----ccccCCEEECCCCcc
Confidence 5555544433322223445566 788888888877655544443 455666666666543
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.85 E-value=2.1e-10 Score=102.61 Aligned_cols=109 Identities=10% Similarity=-0.018 Sum_probs=55.5
Q ss_pred cCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHH
Q 021667 158 LCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGK 237 (309)
Q Consensus 158 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~ 237 (309)
.+++|+.|+++++.+... . .+ ..+++|+.|++++|.++..... .+..+++|+.|++++|...........
T Consensus 194 ~l~~L~~L~L~~n~l~~~--~------~~-~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~ 263 (452)
T 3zyi_A 194 GLFNLKYLNLGMCNIKDM--P------NL-TPLVGLEELEMSGNHFPEIRPG-SFHGLSSLKKLWVMNSQVSLIERNAFD 263 (452)
T ss_dssp TCTTCCEEECTTSCCSSC--C------CC-TTCTTCCEEECTTSCCSEECGG-GGTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred CCCCCCEEECCCCccccc--c------cc-cccccccEEECcCCcCcccCcc-cccCccCCCEEEeCCCcCceECHHHhc
Confidence 355666666665444321 0 12 2566777777777765532222 123566677777766554333222333
Q ss_pred HhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667 238 ICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL 282 (309)
Q Consensus 238 ~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~ 282 (309)
.++ +|+.|+|++|.++......+. ..+.+..+++++...
T Consensus 264 ~l~-~L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 264 GLA-SLVELNLAHNNLSSLPHDLFT-----PLRYLVELHLHHNPW 302 (452)
T ss_dssp TCT-TCCEEECCSSCCSCCCTTSST-----TCTTCCEEECCSSCE
T ss_pred CCC-CCCEEECCCCcCCccChHHhc-----cccCCCEEEccCCCc
Confidence 445 666666666666544333332 233455555554433
No 64
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.85 E-value=2e-10 Score=95.56 Aligned_cols=184 Identities=15% Similarity=0.052 Sum_probs=122.0
Q ss_pred CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667 84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL 162 (309)
Q Consensus 84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L 162 (309)
.+.++.|++.. .++... ......+++|++|++.++ .++.. ...++..+++|++|+|++|.+..... .....+++|
T Consensus 36 ~~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~i-~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L 111 (270)
T 2o6q_A 36 PADTKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDN-KLQTL-PAGIFKELKNLETLWVTDNKLQALPI-GVFDQLVNL 111 (270)
T ss_dssp CTTCSEEECCSSCCSCCC-TTSSSSCTTCCEEECCSS-CCSCC-CTTTTSSCTTCCEEECCSSCCCCCCT-TTTTTCSSC
T ss_pred CCCCCEEECcCCCCCeeC-HHHhcCCCCCCEEECCCC-ccCee-ChhhhcCCCCCCEEECCCCcCCcCCH-hHcccccCC
Confidence 35788999854 232211 112335899999999865 44321 11234568999999999996653211 223558999
Q ss_pred cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhc
Q 021667 163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAER 242 (309)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~ 242 (309)
+.|++.++.+... . ......+++|++|++++|.++.... ..+..+++|++|++++|............++ +
T Consensus 112 ~~L~l~~n~l~~~--~-----~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~ 182 (270)
T 2o6q_A 112 AELRLDRNQLKSL--P-----PRVFDSLTKLTYLSLGYNELQSLPK-GVFDKLTSLKELRLYNNQLKRVPEGAFDKLT-E 182 (270)
T ss_dssp CEEECCSSCCCCC--C-----TTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-T
T ss_pred CEEECCCCccCee--C-----HHHhCcCcCCCEEECCCCcCCccCH-hHccCCcccceeEecCCcCcEeChhHhccCC-C
Confidence 9999998665432 1 1112378999999999997764222 1234689999999999865554333345567 9
Q ss_pred cCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccCCC
Q 021667 243 IRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSD 285 (309)
Q Consensus 243 L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~d 285 (309)
|+.|++++|.++......+. ..+.+..+++++....-|
T Consensus 183 L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 183 LKTLKLDNNQLKRVPEGAFD-----SLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTT-----TCTTCCEEECCSSCBCCS
T ss_pred cCEEECCCCcCCcCCHHHhc-----cccCCCEEEecCCCeeCC
Confidence 99999999998766555453 456777888887766544
No 65
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.84 E-value=1.2e-10 Score=108.16 Aligned_cols=183 Identities=16% Similarity=0.107 Sum_probs=95.7
Q ss_pred CCCceEEeccc-cCChHH-HHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCC
Q 021667 84 NGQLLSINIEY-FGTDEL-LQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPL 161 (309)
Q Consensus 84 ~~~l~~l~l~~-~~~~~~-l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 161 (309)
.+.++.++++. .++... .......+++|++|++.++ .++.. ....+..+++|++|++++|.+...........+++
T Consensus 349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 426 (606)
T 3t6q_A 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSL-KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL 426 (606)
T ss_dssp CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC-SCEEE-CTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTT
T ss_pred cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCC-cCCcC-CHHHhcCCccCCeEECCCCcCCCcccchhhhCccc
Confidence 46778887754 222211 0112234778888888765 33211 11223456777888877774432211122344677
Q ss_pred CcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHH--HHHHhCCCCCeeecCCCCCcCchhHHHHHh
Q 021667 162 LRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQ--AILDACPHLESLDLRQCFNVNLVGKLGKIC 239 (309)
Q Consensus 162 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~--~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~ 239 (309)
|+.|+++++.+... ....+. .+++|++|++++|.++...+. ..+..+++|+.|++++|...+........+
T Consensus 427 L~~L~l~~n~l~~~------~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 499 (606)
T 3t6q_A 427 LKVLNLSHSLLDIS------SEQLFD-GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL 499 (606)
T ss_dssp CCEEECTTCCCBTT------CTTTTT-TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred CCEEECCCCccCCc------CHHHHh-CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccc
Confidence 77777776544321 011122 567777777777766542211 123456777777777765443322333445
Q ss_pred HhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667 240 AERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL 282 (309)
Q Consensus 240 ~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~ 282 (309)
+ +|++|++++|.+++.....+. ....+ .++++++..
T Consensus 500 ~-~L~~L~Ls~N~l~~~~~~~l~-----~l~~L-~L~L~~N~l 535 (606)
T 3t6q_A 500 K-MMNHVDLSHNRLTSSSIEALS-----HLKGI-YLNLASNHI 535 (606)
T ss_dssp T-TCCEEECCSSCCCGGGGGGGT-----TCCSC-EEECCSSCC
T ss_pred c-CCCEEECCCCccCcCChhHhC-----ccccc-EEECcCCcc
Confidence 5 677777777776655544443 33344 444544433
No 66
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.83 E-value=1.9e-10 Score=94.60 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=49.8
Q ss_pred cCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHH
Q 021667 133 GFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAIL 212 (309)
Q Consensus 133 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~ 212 (309)
.+++|++|+|++|.+..... .....+++|+.|+++++.+... . ......+++|++|++++|.++.-.. ..+
T Consensus 57 ~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~--~-----~~~~~~l~~L~~L~L~~N~l~~~~~-~~~ 127 (251)
T 3m19_A 57 GLTKLTWLNLDYNQLQTLSA-GVFDDLTELGTLGLANNQLASL--P-----LGVFDHLTQLDKLYLGGNQLKSLPS-GVF 127 (251)
T ss_dssp TCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCCCC--C-----TTTTTTCTTCCEEECCSSCCCCCCT-TTT
T ss_pred CcccCCEEECCCCcCCccCH-hHhccCCcCCEEECCCCccccc--C-----hhHhcccCCCCEEEcCCCcCCCcCh-hHh
Confidence 45556666665554432111 1112345566666555443311 0 0111245556666665554442111 112
Q ss_pred HhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCch
Q 021667 213 DACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDY 256 (309)
Q Consensus 213 ~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~ 256 (309)
..+++|++|++++|............++ +|+.|+|++|.++..
T Consensus 128 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 128 DRLTKLKELRLNTNQLQSIPAGAFDKLT-NLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCSCC
T ss_pred ccCCcccEEECcCCcCCccCHHHcCcCc-CCCEEECCCCcCCcc
Confidence 2455566666655543322222223344 556666666555443
No 67
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.83 E-value=1e-09 Score=85.09 Aligned_cols=135 Identities=16% Similarity=0.083 Sum_probs=87.3
Q ss_pred CCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHH
Q 021667 108 SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIA 187 (309)
Q Consensus 108 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 187 (309)
+++|+.|++.++ .++. +..+....++|+.|++++|.++.- .....+++|+.|+++++.+... . ..+.
T Consensus 18 ~~~L~~L~l~~n-~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~~~----~---~~~~ 84 (176)
T 1a9n_A 18 AVRDRELDLRGY-KIPV--IENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRI----G---EGLD 84 (176)
T ss_dssp TTSCEEEECTTS-CCCS--CCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCCEE----C---SCHH
T ss_pred cCCceEEEeeCC-CCch--hHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCccccc----C---cchh
Confidence 678888888866 4442 233344456888888888877642 2234578888888887655411 1 1122
Q ss_pred hcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchh---HHHHHhHhccCceecCCCCCCch
Q 021667 188 ENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVG---KLGKICAERIRDLRHPNDSTHDY 256 (309)
Q Consensus 188 ~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~---~l~~~~~~~L~~L~l~~~~~~d~ 256 (309)
..+++|++|++++|.+++-.....+..+++|+.|++++|....... .+...++ +|+.|++++|...+.
T Consensus 85 ~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~-~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 85 QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVP-QVRVLDFQKVKLKER 155 (176)
T ss_dssp HHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCT-TCSEETTEECCHHHH
T ss_pred hcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCC-ccceeCCCcCCHHHH
Confidence 3788888888888877642211134468888888888877543322 2466777 888888888876443
No 68
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.82 E-value=2.1e-10 Score=102.36 Aligned_cols=159 Identities=18% Similarity=0.070 Sum_probs=75.8
Q ss_pred CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCC-CCCHHHHHHHHhcCCC
Q 021667 84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYC-SLSQEALEAVGSLCPL 161 (309)
Q Consensus 84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~ 161 (309)
.++|+.|++.+ .++. ........+++|+.|++.++ .++... ...+..+++|++|+|+++ .+... .......+++
T Consensus 111 l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N-~i~~~~-~~~~~~l~~L~~L~l~~~~~l~~i-~~~~~~~l~~ 186 (440)
T 3zyj_A 111 LANLNTLELFDNRLTT-IPNGAFVYLSKLKELWLRNN-PIESIP-SYAFNRIPSLRRLDLGELKRLSYI-SEGAFEGLSN 186 (440)
T ss_dssp CSSCCEEECCSSCCSS-CCTTTSCSCSSCCEEECCSC-CCCEEC-TTTTTTCTTCCEEECCCCTTCCEE-CTTTTTTCSS
T ss_pred CccCCEEECCCCcCCe-eCHhHhhccccCceeeCCCC-cccccC-HHHhhhCcccCEeCCCCCCCccee-Ccchhhcccc
Confidence 46788888754 2221 11112234677888888754 333211 112345677777777764 22211 0111234566
Q ss_pred CcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHh
Q 021667 162 LRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAE 241 (309)
Q Consensus 162 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~ 241 (309)
|+.|+++++.+... . .+ ..+++|++|+|++|.++..... .+..+++|+.|++++|............++
T Consensus 187 L~~L~L~~n~l~~~--~------~~-~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~- 255 (440)
T 3zyj_A 187 LRYLNLAMCNLREI--P------NL-TPLIKLDELDLSGNHLSAIRPG-SFQGLMHLQKLWMIQSQIQVIERNAFDNLQ- 255 (440)
T ss_dssp CCEEECTTSCCSSC--C------CC-TTCSSCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTSSTTCT-
T ss_pred cCeecCCCCcCccc--c------cc-CCCcccCEEECCCCccCccChh-hhccCccCCEEECCCCceeEEChhhhcCCC-
Confidence 77777766544321 1 11 2555666666666655432111 122455555665555543322222223344
Q ss_pred ccCceecCCCCCCchh
Q 021667 242 RIRDLRHPNDSTHDYE 257 (309)
Q Consensus 242 ~L~~L~l~~~~~~d~~ 257 (309)
+|+.|+|++|.++...
T Consensus 256 ~L~~L~L~~N~l~~~~ 271 (440)
T 3zyj_A 256 SLVEINLAHNNLTLLP 271 (440)
T ss_dssp TCCEEECTTSCCCCCC
T ss_pred CCCEEECCCCCCCccC
Confidence 5555555555554433
No 69
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.81 E-value=2.9e-09 Score=96.93 Aligned_cols=160 Identities=14% Similarity=0.102 Sum_probs=95.5
Q ss_pred cCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHH-HHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHH
Q 021667 107 RSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQE-ALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKA 185 (309)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 185 (309)
.+++|++|+++++ .++.... ..+..+++|++|++++|.+..- .+......+++|+.|+++++.+... ....
T Consensus 322 ~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~------l~~~ 393 (520)
T 2z7x_B 322 KISPFLHLDFSNN-LLTDTVF-ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD------EKKG 393 (520)
T ss_dssp SCCCCCEEECCSS-CCCTTTT-TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC------GGGC
T ss_pred hCCcccEEEeECC-ccChhhh-hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc------cccc
Confidence 4677888888765 4443211 2234577888888888877642 2333345578888888877655421 0001
Q ss_pred HHhcCCCCcEEEecCCccChHHHHHHHHhC-CCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhh
Q 021667 186 IAENMHGLRHLQLFGNELTNVGLQAILDAC-PHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQD 264 (309)
Q Consensus 186 l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~-~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~ 264 (309)
....+++|++|++++|.++..... .. ++|+.|++++|....-...+. .++ +|++|++++|.++......+.
T Consensus 394 ~~~~l~~L~~L~Ls~N~l~~~~~~----~l~~~L~~L~Ls~N~l~~ip~~~~-~l~-~L~~L~L~~N~l~~l~~~~~~-- 465 (520)
T 2z7x_B 394 DCSWTKSLLSLNMSSNILTDTIFR----CLPPRIKVLDLHSNKIKSIPKQVV-KLE-ALQELNVASNQLKSVPDGIFD-- 465 (520)
T ss_dssp SCCCCTTCCEEECCSSCCCGGGGG----SCCTTCCEEECCSSCCCCCCGGGG-GCT-TCCEEECCSSCCCCCCTTTTT--
T ss_pred hhccCccCCEEECcCCCCCcchhh----hhcccCCEEECCCCcccccchhhh-cCC-CCCEEECCCCcCCccCHHHhc--
Confidence 112567888888888877643322 22 578888888776543222333 666 888888888887654333332
Q ss_pred hccCCcCCCCCCCCccccCCC
Q 021667 265 FCWSSVEDYPSGISDIELVSD 285 (309)
Q Consensus 265 ~c~~~~~l~~~~~s~~~~~~d 285 (309)
..+.+..+++++....-|
T Consensus 466 ---~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 466 ---RLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp ---TCTTCCEEECCSSCBCCC
T ss_pred ---cCCcccEEECcCCCCccc
Confidence 445677777776665444
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.81 E-value=2.3e-10 Score=96.29 Aligned_cols=161 Identities=16% Similarity=0.065 Sum_probs=85.5
Q ss_pred CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667 84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL 162 (309)
Q Consensus 84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L 162 (309)
.+.++.|++.. .++.... ...+++|+.|+++++ .++. +...+..+++|++|++++|.++.... .....+++|
T Consensus 54 l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N-~l~~--l~~~~~~l~~L~~L~l~~N~l~~l~~-~~~~~l~~L 126 (290)
T 1p9a_G 54 YTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHN-QLQS--LPLLGQTLPALTVLDVSFNRLTSLPL-GALRGLGEL 126 (290)
T ss_dssp CTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSS-CCSS--CCCCTTTCTTCCEEECCSSCCCCCCS-STTTTCTTC
T ss_pred CCCCCEEECCCCccCcccC---CCCCCcCCEEECCCC-cCCc--CchhhccCCCCCEEECCCCcCcccCH-HHHcCCCCC
Confidence 45666666643 2221100 034667777777754 3331 12223456777777777775542111 112346777
Q ss_pred cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhc
Q 021667 163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAER 242 (309)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~ 242 (309)
+.|.++++.+... . ......+++|+.|++++|.++.-. ..++..+++|+.|++++|....-... ....+ +
T Consensus 127 ~~L~L~~N~l~~~--~-----~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~~L~L~~N~l~~ip~~-~~~~~-~ 196 (290)
T 1p9a_G 127 QELYLKGNELKTL--P-----PGLLTPTPKLEKLSLANNNLTELP-AGLLNGLENLDTLLLQENSLYTIPKG-FFGSH-L 196 (290)
T ss_dssp CEEECTTSCCCCC--C-----TTTTTTCTTCCEEECTTSCCSCCC-TTTTTTCTTCCEEECCSSCCCCCCTT-TTTTC-C
T ss_pred CEEECCCCCCCcc--C-----hhhcccccCCCEEECCCCcCCccC-HHHhcCcCCCCEEECCCCcCCccChh-hcccc-c
Confidence 7777776554321 1 111225677888888877665211 12234567788888877664432222 22334 6
Q ss_pred cCceecCCCCCC-chhhhhh
Q 021667 243 IRDLRHPNDSTH-DYEFGAD 261 (309)
Q Consensus 243 L~~L~l~~~~~~-d~~~~~~ 261 (309)
|+.|.+++|++. +.++..+
T Consensus 197 L~~l~L~~Np~~C~c~~~~l 216 (290)
T 1p9a_G 197 LPFAFLHGNPWLCNCEILYF 216 (290)
T ss_dssp CSEEECCSCCBCCSGGGHHH
T ss_pred CCeEEeCCCCccCcCccHHH
Confidence 888888888853 4444443
No 71
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.80 E-value=4.5e-10 Score=96.24 Aligned_cols=84 Identities=17% Similarity=0.060 Sum_probs=48.4
Q ss_pred CCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCc
Q 021667 191 HGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSV 270 (309)
Q Consensus 191 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~ 270 (309)
++|++|++++|.++...... +..+++|++|++++|............++ +|++|++++|.++.... .+. ..+
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~lp~-~l~-----~l~ 263 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAAS-LKGLNNLAKLGLSFNSISAVDNGSLANTP-HLRELHLNNNKLVKVPG-GLA-----DHK 263 (330)
T ss_dssp TTCSEEECTTSCCCEECTGG-GTTCTTCCEEECCSSCCCEECTTTGGGST-TCCEEECCSSCCSSCCT-TTT-----TCS
T ss_pred ccCCEEECCCCcCCccCHHH-hcCCCCCCEEECCCCcCceeChhhccCCC-CCCEEECCCCcCccCCh-hhc-----cCC
Confidence 56667777666555332222 23567788888877664433222334556 78888888887763211 121 445
Q ss_pred CCCCCCCCcccc
Q 021667 271 EDYPSGISDIEL 282 (309)
Q Consensus 271 ~l~~~~~s~~~~ 282 (309)
.++.++++++..
T Consensus 264 ~L~~L~l~~N~i 275 (330)
T 1xku_A 264 YIQVVYLHNNNI 275 (330)
T ss_dssp SCCEEECCSSCC
T ss_pred CcCEEECCCCcC
Confidence 666777776654
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.80 E-value=7.4e-10 Score=94.37 Aligned_cols=178 Identities=13% Similarity=0.051 Sum_probs=90.6
Q ss_pred CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHH----------
Q 021667 84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEAL---------- 152 (309)
Q Consensus 84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~---------- 152 (309)
.++++.|+++. .++......+ ..+++|+.|+++++ .++... . +..+++|++|++++|.++....
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~--~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~ 107 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADL-APFTKLELLNLSSN-VLYETL--D-LESLSTLRTLDLNNNYVQELLVGPSIETLHAA 107 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHH-TTCTTCCEEECTTS-CCEEEE--E-ETTCTTCCEEECCSSEEEEEEECTTCCEEECC
T ss_pred CCCCCEEECcCCccCcCCHHHh-hCCCcCCEEECCCC-cCCcch--h-hhhcCCCCEEECcCCccccccCCCCcCEEECC
Confidence 45666666643 2332221222 34666777766654 332110 0 3445666666666664332100
Q ss_pred -----HHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCC
Q 021667 153 -----EAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCF 227 (309)
Q Consensus 153 -----~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 227 (309)
......+++|+.|+++++.+... ....+ ..+++|++|++++|.++......+...+++|++|++++|.
T Consensus 108 ~n~l~~~~~~~~~~L~~L~l~~N~l~~~------~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 108 NNNISRVSCSRGQGKKNIYLANNKITML------RDLDE-GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp SSCCSEEEECCCSSCEEEECCSSCCCSG------GGBCT-GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred CCccCCcCccccCCCCEEECCCCCCCCc------cchhh-hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence 00011234555555554433211 00111 2567778888877776654444444567778888887776
Q ss_pred CcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667 228 NVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL 282 (309)
Q Consensus 228 ~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~ 282 (309)
.... .... .++ +|++|++++|.++..... +. ..+.+..++++++..
T Consensus 181 l~~~-~~~~-~l~-~L~~L~Ls~N~l~~l~~~-~~-----~l~~L~~L~L~~N~l 226 (317)
T 3o53_A 181 IYDV-KGQV-VFA-KLKTLDLSSNKLAFMGPE-FQ-----SAAGVTWISLRNNKL 226 (317)
T ss_dssp CCEE-ECCC-CCT-TCCEEECCSSCCCEECGG-GG-----GGTTCSEEECTTSCC
T ss_pred Cccc-cccc-ccc-cCCEEECCCCcCCcchhh-hc-----ccCcccEEECcCCcc
Confidence 4332 1111 245 788888888887654322 22 345666777766644
No 73
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.80 E-value=2.6e-09 Score=97.18 Aligned_cols=164 Identities=13% Similarity=0.114 Sum_probs=112.5
Q ss_pred cCCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCH-HHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCC
Q 021667 83 SNGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISD-QGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCP 160 (309)
Q Consensus 83 ~~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 160 (309)
..+.++.+++++ .+++.....+ ..+++|+.|+++++ .++. ..+...+..+++|++|++++|.+...........++
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENC-GHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTC-CCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hCCcccEEEeECCccChhhhhhh-ccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence 456788888854 4443222223 45899999999976 5553 345566778999999999999775421222234578
Q ss_pred CCcEEEeccCCCCCCCcccchhHHHHHhcC-CCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHh
Q 021667 161 LLRSFKLNNRGHRCPKIECDDDAKAIAENM-HGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKIC 239 (309)
Q Consensus 161 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~ 239 (309)
+|+.|+++++.+... +...+ ++|+.|++++|.++ .+..-+..+++|++|++++|...+-.......+
T Consensus 400 ~L~~L~Ls~N~l~~~----------~~~~l~~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l 467 (520)
T 2z7x_B 400 SLLSLNMSSNILTDT----------IFRCLPPRIKVLDLHSNKIK--SIPKQVVKLEALQELNVASNQLKSVPDGIFDRL 467 (520)
T ss_dssp TCCEEECCSSCCCGG----------GGGSCCTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCCEEECcCCCCCcc----------hhhhhcccCCEEECCCCccc--ccchhhhcCCCCCEEECCCCcCCccCHHHhccC
Confidence 999999998655421 11123 69999999999887 222222378999999999987554333335567
Q ss_pred HhccCceecCCCCCC-chhhhhh
Q 021667 240 AERIRDLRHPNDSTH-DYEFGAD 261 (309)
Q Consensus 240 ~~~L~~L~l~~~~~~-d~~~~~~ 261 (309)
+ +|+.|++++|+++ +.....+
T Consensus 468 ~-~L~~L~l~~N~~~c~c~~~~~ 489 (520)
T 2z7x_B 468 T-SLQKIWLHTNPWDCSCPRIDY 489 (520)
T ss_dssp T-TCCEEECCSSCBCCCHHHHHH
T ss_pred C-cccEEECcCCCCcccCCchHH
Confidence 7 9999999999974 4444444
No 74
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.78 E-value=4.7e-10 Score=96.10 Aligned_cols=140 Identities=18% Similarity=0.122 Sum_probs=81.3
Q ss_pred CCCccEEEeCCCCCCCHH-HHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHH
Q 021667 108 SRNLRNLRLVSCYNISDQ-GFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAI 186 (309)
Q Consensus 108 ~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l 186 (309)
+++|+.|++.++ .++.. .....+..+++|++|+++++.++.-. ....++|+.|+++++.+.. .....+
T Consensus 144 l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~----~~~~~~L~~L~l~~n~l~~------~~~~~~ 212 (330)
T 1xku_A 144 LNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADTNITTIP----QGLPPSLTELHLDGNKITK------VDAASL 212 (330)
T ss_dssp CTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC----SSCCTTCSEEECTTSCCCE------ECTGGG
T ss_pred CccccEEECCCC-cCCccCcChhhccCCCCcCEEECCCCccccCC----ccccccCCEEECCCCcCCc------cCHHHh
Confidence 555555555533 22211 11112334555555555555333100 0112556666666543321 111223
Q ss_pred HhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhh
Q 021667 187 AENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADF 262 (309)
Q Consensus 187 ~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~ 262 (309)
. .+++|++|++++|.++..... .+..+++|++|++++|.... .......++ +|+.|++++|+++..+...++
T Consensus 213 ~-~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~-~L~~L~l~~N~i~~~~~~~f~ 284 (330)
T 1xku_A 213 K-GLNNLAKLGLSFNSISAVDNG-SLANTPHLRELHLNNNKLVK-VPGGLADHK-YIQVVYLHNNNISAIGSNDFC 284 (330)
T ss_dssp T-TCTTCCEEECCSSCCCEECTT-TGGGSTTCCEEECCSSCCSS-CCTTTTTCS-SCCEEECCSSCCCCCCTTSSS
T ss_pred c-CCCCCCEEECCCCcCceeChh-hccCCCCCCEEECCCCcCcc-CChhhccCC-CcCEEECCCCcCCccChhhcC
Confidence 3 789999999999987753322 23468999999999987553 322334567 999999999999877766664
No 75
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.78 E-value=5.6e-10 Score=106.44 Aligned_cols=155 Identities=15% Similarity=0.133 Sum_probs=75.6
Q ss_pred CCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHH--HHhcCCCCcEEEeccCCCCCCCcccchhHHH
Q 021667 108 SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEA--VGSLCPLLRSFKLNNRGHRCPKIECDDDAKA 185 (309)
Q Consensus 108 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~--l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 185 (309)
+++|++|+++++ .++......+...+++|++|+|++|.+....... ....+++|++|+++++.+... . .
T Consensus 125 l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~-~----- 195 (768)
T 3rgz_A 125 CSGLKFLNVSSN-TLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD--V-D----- 195 (768)
T ss_dssp CTTCCEEECCSS-EEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESC--C-B-----
T ss_pred CCCCCEEECcCC-ccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCccccc--C-C-----
Confidence 566666666544 1111101111134566666666666544322221 134466666666665443321 0 0
Q ss_pred HHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhh
Q 021667 186 IAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDF 265 (309)
Q Consensus 186 l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~ 265 (309)
. ..+++|++|++++|.++...- . +..+++|++|++++|............++ +|++|++++|.++...- ..
T Consensus 196 ~-~~l~~L~~L~Ls~n~l~~~~~-~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~-----~~ 266 (768)
T 3rgz_A 196 V-SRCVNLEFLDVSSNNFSTGIP-F-LGDCSALQHLDISGNKLSGDFSRAISTCT-ELKLLNISSNQFVGPIP-----PL 266 (768)
T ss_dssp C-TTCTTCCEEECCSSCCCSCCC-B-CTTCCSCCEEECCSSCCCSCHHHHTTTCS-SCCEEECCSSCCEESCC-----CC
T ss_pred c-ccCCcCCEEECcCCcCCCCCc-c-cccCCCCCEEECcCCcCCCcccHHHhcCC-CCCEEECCCCcccCccC-----cc
Confidence 0 256666666666665543111 1 33566677777766665444334444555 67777777766532110 11
Q ss_pred ccCCcCCCCCCCCcccc
Q 021667 266 CWSSVEDYPSGISDIEL 282 (309)
Q Consensus 266 c~~~~~l~~~~~s~~~~ 282 (309)
..+.++.++++++..
T Consensus 267 --~l~~L~~L~L~~n~l 281 (768)
T 3rgz_A 267 --PLKSLQYLSLAENKF 281 (768)
T ss_dssp --CCTTCCEEECCSSEE
T ss_pred --ccCCCCEEECcCCcc
Confidence 334555566665543
No 76
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.77 E-value=4.6e-09 Score=97.08 Aligned_cols=170 Identities=16% Similarity=0.090 Sum_probs=121.8
Q ss_pred CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667 84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL 162 (309)
Q Consensus 84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L 162 (309)
...|+.|++.. .+.. +.. ...+++|+.|+|+++ .++... . +..+++|+.|+|++|.+... . ....+++|
T Consensus 42 L~~L~~L~l~~n~i~~--l~~-l~~l~~L~~L~Ls~N-~l~~~~--~-l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L 111 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKS--VQG-IQYLPNVTKLFLNGN-KLTDIK--P-LTNLKNLGWLFLDENKIKDL--S-SLKDLKKL 111 (605)
T ss_dssp HTTCCCCBCTTCCCCC--CTT-GGGCTTCCEEECTTS-CCCCCG--G-GGGCTTCCEEECCSSCCCCC--T-TSTTCTTC
T ss_pred CCCCCEEECcCCCCCC--ChH-HccCCCCCEEEeeCC-CCCCCh--h-hccCCCCCEEECcCCCCCCC--h-hhccCCCC
Confidence 34677777743 2222 112 345899999999976 444321 1 66799999999999977542 2 23558999
Q ss_pred cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhc
Q 021667 163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAER 242 (309)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~ 242 (309)
+.|+++++.+... ..+. .+++|+.|+|++|.++.- ..+..+++|+.|+|++|...... . ...++ +
T Consensus 112 ~~L~Ls~N~l~~l--------~~l~-~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~-~-l~~l~-~ 176 (605)
T 1m9s_A 112 KSLSLEHNGISDI--------NGLV-HLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIV-P-LAGLT-K 176 (605)
T ss_dssp CEEECTTSCCCCC--------GGGG-GCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCCG-G-GTTCT-T
T ss_pred CEEEecCCCCCCC--------cccc-CCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCCch-h-hccCC-C
Confidence 9999998766532 1233 899999999999988764 34557999999999998755433 3 56677 9
Q ss_pred cCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccCCC
Q 021667 243 IRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSD 285 (309)
Q Consensus 243 L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~d 285 (309)
|+.|+|++|.+++. ..+. ..+.|..++++++.....
T Consensus 177 L~~L~Ls~N~i~~l--~~l~-----~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 177 LQNLYLSKNHISDL--RALA-----GLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCEEECCSSCCCBC--GGGT-----TCTTCSEEECCSEEEECC
T ss_pred CCEEECcCCCCCCC--hHHc-----cCCCCCEEEccCCcCcCC
Confidence 99999999999875 2333 567888889988876544
No 77
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.75 E-value=1.6e-09 Score=94.90 Aligned_cols=15 Identities=33% Similarity=0.332 Sum_probs=7.8
Q ss_pred cCCCcCEEEecCCCC
Q 021667 133 GFPLLEELELSYCSL 147 (309)
Q Consensus 133 ~~~~L~~L~L~~~~~ 147 (309)
.+++|++|++++|.+
T Consensus 163 ~l~~L~~L~l~~n~l 177 (390)
T 3o6n_A 163 ATTSLQNLQLSSNRL 177 (390)
T ss_dssp SCTTCCEEECCSSCC
T ss_pred CCCCCCEEECCCCcC
Confidence 345555555555543
No 78
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.74 E-value=2.1e-09 Score=91.58 Aligned_cols=169 Identities=17% Similarity=0.126 Sum_probs=94.4
Q ss_pred hHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCc
Q 021667 98 DELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKI 177 (309)
Q Consensus 98 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 177 (309)
...+..+...+++|++|+++++ .++... ...+..+++|++|+|++|.+.... . ...+++|+.|+++++.+...
T Consensus 23 ~~~~~~~~~~~~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~l~~l-- 95 (317)
T 3o53_A 23 KQALASLRQSAWNVKELDLSGN-PLSQIS-AADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNYVQEL-- 95 (317)
T ss_dssp HHHHHHHHTTGGGCSEEECTTS-CCCCCC-HHHHTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSSEEEEE--
T ss_pred hhhHHHHhccCCCCCEEECcCC-ccCcCC-HHHhhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCCccccc--
Confidence 3445566667889999999976 555322 234567999999999999765321 1 45678999999987544311
Q ss_pred ccchh----------H-HHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCc-hhHHHHHhHhccCc
Q 021667 178 ECDDD----------A-KAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNL-VGKLGKICAERIRD 245 (309)
Q Consensus 178 ~~~~~----------~-~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~-~~~l~~~~~~~L~~ 245 (309)
..... + ......+++|++|++++|.++...-.. +..+++|++|++++|..... ...+...++ +|++
T Consensus 96 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~-~L~~ 173 (317)
T 3o53_A 96 LVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTVNFAELAASSD-TLEH 173 (317)
T ss_dssp EECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBC-TGGGSSEEEEECTTSCCCEEEGGGGGGGTT-TCCE
T ss_pred cCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchh-hhccCCCCEEECCCCCCCcccHHHHhhccC-cCCE
Confidence 00000 0 000112455666666666554321111 22456677777766654332 223333455 6777
Q ss_pred eecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667 246 LRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL 282 (309)
Q Consensus 246 L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~ 282 (309)
|++++|.+++..... ..+.++.++++++..
T Consensus 174 L~L~~N~l~~~~~~~-------~l~~L~~L~Ls~N~l 203 (317)
T 3o53_A 174 LNLQYNFIYDVKGQV-------VFAKLKTLDLSSNKL 203 (317)
T ss_dssp EECTTSCCCEEECCC-------CCTTCCEEECCSSCC
T ss_pred EECCCCcCccccccc-------ccccCCEEECCCCcC
Confidence 777777765441111 234566666665544
No 79
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.74 E-value=8.5e-11 Score=100.06 Aligned_cols=85 Identities=19% Similarity=0.122 Sum_probs=44.8
Q ss_pred CCCceEEecc--ccCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCC
Q 021667 84 NGQLLSINIE--YFGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPL 161 (309)
Q Consensus 84 ~~~l~~l~l~--~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 161 (309)
.+.++.|++. +.+....-..+ ..+++|++|++.++ .++.. +...+..+++|++|++++|.+..... .....+++
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n-~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~ 150 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHT-NVSGA-IPDFLSQIKTLVTLDFSYNALSGTLP-PSISSLPN 150 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEE-CCEEE-CCGGGGGCTTCCEEECCSSEEESCCC-GGGGGCTT
T ss_pred CCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCC-eeCCc-CCHHHhCCCCCCEEeCCCCccCCcCC-hHHhcCCC
Confidence 5677888775 33322221222 34778888887754 33211 11224456777777777774432111 11234677
Q ss_pred CcEEEeccCCC
Q 021667 162 LRSFKLNNRGH 172 (309)
Q Consensus 162 L~~L~l~~~~~ 172 (309)
|++|+++++.+
T Consensus 151 L~~L~L~~N~l 161 (313)
T 1ogq_A 151 LVGITFDGNRI 161 (313)
T ss_dssp CCEEECCSSCC
T ss_pred CCeEECcCCcc
Confidence 77777766443
No 80
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.73 E-value=6.3e-11 Score=100.85 Aligned_cols=134 Identities=11% Similarity=0.050 Sum_probs=82.9
Q ss_pred CCceEEeccc-cCCh--HHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCC
Q 021667 85 GQLLSINIEY-FGTD--ELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPL 161 (309)
Q Consensus 85 ~~l~~l~l~~-~~~~--~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 161 (309)
.+++.+++.. .++. .....+ ..+++|++|+++++..++.. +...+..+++|++|+|++|.+...... ....+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCG-GGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCH-HHhCCCC
Confidence 5788888854 3332 222233 35899999999842233321 122345789999999999976532112 2345899
Q ss_pred CcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCC-CCCeeecCCCCCc
Q 021667 162 LRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACP-HLESLDLRQCFNV 229 (309)
Q Consensus 162 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~-~L~~L~l~~c~~~ 229 (309)
|++|+++++.+... ....+. .+++|++|++++|.++......+. .++ +|++|++++|...
T Consensus 127 L~~L~Ls~N~l~~~------~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 127 LVTLDFSYNALSGT------LPPSIS-SLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLT 187 (313)
T ss_dssp CCEEECCSSEEESC------CCGGGG-GCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEE
T ss_pred CCEEeCCCCccCCc------CChHHh-cCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCeee
Confidence 99999997655421 111223 788899999988876633222222 444 7788887776543
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.73 E-value=1.1e-09 Score=98.85 Aligned_cols=128 Identities=16% Similarity=0.095 Sum_probs=72.6
Q ss_pred CCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHh
Q 021667 135 PLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDA 214 (309)
Q Consensus 135 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~ 214 (309)
++|++|++++|.++... ...+++|+.|+++++.+... ....+. .+++|++|++++|.++......+...
T Consensus 99 ~~L~~L~L~~N~l~~~~----~~~l~~L~~L~L~~N~l~~~------~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~ 167 (487)
T 3oja_A 99 PSIETLHAANNNISRVS----CSRGQGKKNIYLANNKITML------RDLDEG-CRSRVQYLDLKLNEIDTVNFAELAAS 167 (487)
T ss_dssp TTCCEEECCSSCCCCEE----ECCCSSCEEEECCSSCCCSG------GGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGG
T ss_pred CCcCEEECcCCcCCCCC----ccccCCCCEEECCCCCCCCC------Cchhhc-CCCCCCEEECCCCCCCCcChHHHhhh
Confidence 44555555555333211 12346666666665444321 011122 57788888888887775544455556
Q ss_pred CCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667 215 CPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL 282 (309)
Q Consensus 215 ~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~ 282 (309)
+++|+.|++++|..... .... .++ +|+.|+|++|.++..... +. ..+.+..++++++..
T Consensus 168 l~~L~~L~Ls~N~l~~~-~~~~-~l~-~L~~L~Ls~N~l~~~~~~-~~-----~l~~L~~L~Ls~N~l 226 (487)
T 3oja_A 168 SDTLEHLNLQYNFIYDV-KGQV-VFA-KLKTLDLSSNKLAFMGPE-FQ-----SAAGVTWISLRNNKL 226 (487)
T ss_dssp TTTCCEEECTTSCCCEE-ECCC-CCT-TCCEEECCSSCCCEECGG-GG-----GGTTCSEEECTTSCC
T ss_pred CCcccEEecCCCccccc-cccc-cCC-CCCEEECCCCCCCCCCHh-Hc-----CCCCccEEEecCCcC
Confidence 78888888888764432 1111 356 888888888887654322 22 345666677776544
No 82
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.73 E-value=7.9e-10 Score=90.47 Aligned_cols=50 Identities=28% Similarity=0.477 Sum_probs=45.6
Q ss_pred CCCCCCcHHHHHHHhccCChhhhhhhhhhhcHHHHHhccCCCCCceeecCC
Q 021667 11 CDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHN 61 (309)
Q Consensus 11 ~~~~~LP~eiL~~If~~L~~~d~~~~~~~Vcr~W~~~~~~~~l~~~i~l~~ 61 (309)
..|++||+||+.+||+||+++|++ ++++|||+||.++.++.+|+++-.+.
T Consensus 3 ~~l~~LP~ei~l~IlsfL~p~DL~-~l~~vcr~Wr~la~D~~LWr~~l~rd 52 (312)
T 3l2o_B 3 STLTRLPIDVQLYILSFLSPHDLC-QLGSTNHYWNETVRDPILWRYFLLRD 52 (312)
T ss_dssp CHHHHSCHHHHHHHHHTSCHHHHH-HHHTTCHHHHHHHTCHHHHHHHHHSS
T ss_pred chhHhCCHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHhccchHHHHHHhcc
Confidence 457899999999999999999995 99999999999999999999876654
No 83
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.71 E-value=8.4e-08 Score=87.76 Aligned_cols=172 Identities=16% Similarity=0.070 Sum_probs=98.3
Q ss_pred CCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHH--HHhcCCCcCEEEecCCCCCHHHH-HHHHhcCC
Q 021667 85 GQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCE--AIKGFPLLEELELSYCSLSQEAL-EAVGSLCP 160 (309)
Q Consensus 85 ~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~-~~l~~~~~ 160 (309)
+.++.+++.. .++ ..-..+...+++|+.|+++++ .++...... ....+++|++|++++|.++.... ......++
T Consensus 310 ~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~ 387 (549)
T 2z81_A 310 EKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387 (549)
T ss_dssp TTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCT
T ss_pred ccceEEEeccCccc-cCCHHHHhcCccccEEEccCC-ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCC
Confidence 4555665533 121 111223345777888888755 555433322 13456778888888876654321 23345677
Q ss_pred CCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhH
Q 021667 161 LLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICA 240 (309)
Q Consensus 161 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~ 240 (309)
+|+.|+++++.+..- . . . ...+++|++|++++|.++.-. . ...++|+.|++++|...... ..++
T Consensus 388 ~L~~L~Ls~N~l~~l--p--~---~-~~~~~~L~~L~Ls~N~l~~l~--~--~~~~~L~~L~Ls~N~l~~~~----~~l~ 451 (549)
T 2z81_A 388 NLTSLDISRNTFHPM--P--D---S-CQWPEKMRFLNLSSTGIRVVK--T--CIPQTLEVLDVSNNNLDSFS----LFLP 451 (549)
T ss_dssp TCCEEECTTCCCCCC--C--S---C-CCCCTTCCEEECTTSCCSCCC--T--TSCTTCSEEECCSSCCSCCC----CCCT
T ss_pred CCCEEECCCCCCccC--C--h---h-hcccccccEEECCCCCccccc--c--hhcCCceEEECCCCChhhhc----ccCC
Confidence 888888877655421 1 0 1 125677888888887665210 0 01246888888877544322 3566
Q ss_pred hccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667 241 ERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL 282 (309)
Q Consensus 241 ~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~ 282 (309)
+|++|++++|.++... ... ..+.++.+|++++..
T Consensus 452 -~L~~L~Ls~N~l~~ip--~~~-----~l~~L~~L~Ls~N~l 485 (549)
T 2z81_A 452 -RLQELYISRNKLKTLP--DAS-----LFPVLLVMKISRNQL 485 (549)
T ss_dssp -TCCEEECCSSCCSSCC--CGG-----GCTTCCEEECCSSCC
T ss_pred -hhcEEECCCCccCcCC--Ccc-----cCccCCEEecCCCcc
Confidence 8999999999876322 111 345677788877654
No 84
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.70 E-value=2.8e-09 Score=98.78 Aligned_cols=13 Identities=8% Similarity=0.120 Sum_probs=7.0
Q ss_pred ccCceecCCCCCC
Q 021667 242 RIRDLRHPNDSTH 254 (309)
Q Consensus 242 ~L~~L~l~~~~~~ 254 (309)
+|+.|+|++|.++
T Consensus 302 ~L~~L~Ls~N~l~ 314 (597)
T 3oja_B 302 TLKVLDLSHNHLL 314 (597)
T ss_dssp TCCEEECCSSCCC
T ss_pred CCcEEECCCCCCC
Confidence 5555555555544
No 85
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.70 E-value=5.2e-10 Score=106.69 Aligned_cols=158 Identities=16% Similarity=0.116 Sum_probs=73.2
Q ss_pred CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHH------------
Q 021667 84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQE------------ 150 (309)
Q Consensus 84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~------------ 150 (309)
.+.++.|++.. .++. .+.. ...+++|++|++.++ .++.. +...+..+++|++|++++|.+...
T Consensus 199 l~~L~~L~Ls~n~l~~-~~~~-l~~l~~L~~L~Ls~n-~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L 274 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFST-GIPF-LGDCSALQHLDISGN-KLSGD-FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL 274 (768)
T ss_dssp CTTCCEEECCSSCCCS-CCCB-CTTCCSCCEEECCSS-CCCSC-HHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEE
T ss_pred CCcCCEEECcCCcCCC-CCcc-cccCCCCCEEECcCC-cCCCc-ccHHHhcCCCCCEEECCCCcccCccCccccCCCCEE
Confidence 45677777643 2211 1111 234667777777654 33322 222344566666666666643211
Q ss_pred ----------HHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCe
Q 021667 151 ----------ALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLES 220 (309)
Q Consensus 151 ----------~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~ 220 (309)
....+...+++|++|++.++.+.. .....+. .+++|++|++++|.++...-...+..+++|++
T Consensus 275 ~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~------~~p~~~~-~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~ 347 (768)
T 3rgz_A 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG------AVPPFFG-SCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347 (768)
T ss_dssp ECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEE------CCCGGGG-GCTTCCEEECCSSEEEEECCHHHHTTCTTCCE
T ss_pred ECcCCccCCccCHHHHhhcCcCCEEECcCCcCCC------ccchHHh-cCCCccEEECCCCcccCcCCHHHHhcCCCCCE
Confidence 000111123444444444332211 0111122 66777777777775542222222345677777
Q ss_pred eecCCCCCcCc-hhHHHHHhHhccCceecCCCCC
Q 021667 221 LDLRQCFNVNL-VGKLGKICAERIRDLRHPNDST 253 (309)
Q Consensus 221 L~l~~c~~~~~-~~~l~~~~~~~L~~L~l~~~~~ 253 (309)
|++++|..... ...+....+ +|+.|++++|.+
T Consensus 348 L~Ls~n~l~~~~p~~l~~l~~-~L~~L~Ls~N~l 380 (768)
T 3rgz_A 348 LDLSFNEFSGELPESLTNLSA-SLLTLDLSSNNF 380 (768)
T ss_dssp EECCSSEEEECCCTTHHHHTT-TCSEEECCSSEE
T ss_pred EeCcCCccCccccHHHHhhhc-CCcEEEccCCCc
Confidence 77777654322 222222222 455555555544
No 86
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.70 E-value=1.5e-08 Score=90.70 Aligned_cols=159 Identities=14% Similarity=0.046 Sum_probs=82.0
Q ss_pred CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667 84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL 162 (309)
Q Consensus 84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L 162 (309)
.+.++.|+++. .++.- . ...+++|++|+++++ .++... +..+++|++|++++|.++.-. ...+++|
T Consensus 63 l~~L~~L~Ls~n~l~~~--~--~~~l~~L~~L~Ls~N-~l~~~~----~~~l~~L~~L~L~~N~l~~l~----~~~l~~L 129 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTL--D--LSQNTNLTYLACDSN-KLTNLD----VTPLTKLTYLNCDTNKLTKLD----VSQNPLL 129 (457)
T ss_dssp CTTCSEEECCSSCCSCC--C--CTTCTTCSEEECCSS-CCSCCC----CTTCTTCCEEECCSSCCSCCC----CTTCTTC
T ss_pred cCCCCEEEccCCcCCeE--c--cccCCCCCEEECcCC-CCceee----cCCCCcCCEEECCCCcCCeec----CCCCCcC
Confidence 45566666643 22221 1 223566666666654 333211 344566666666666444321 2345666
Q ss_pred cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCC-ccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHh
Q 021667 163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGN-ELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAE 241 (309)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~ 241 (309)
+.|+++++.+... .+ ..+++|++|++++| .++... +..+++|+.|++++|.... .. ...++
T Consensus 130 ~~L~l~~N~l~~l---------~l-~~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n~l~~-l~--l~~l~- 191 (457)
T 3bz5_A 130 TYLNCARNTLTEI---------DV-SHNTQLTELDCHLNKKITKLD----VTPQTQLTTLDCSFNKITE-LD--VSQNK- 191 (457)
T ss_dssp CEEECTTSCCSCC---------CC-TTCTTCCEEECTTCSCCCCCC----CTTCTTCCEEECCSSCCCC-CC--CTTCT-
T ss_pred CEEECCCCcccee---------cc-ccCCcCCEEECCCCCcccccc----cccCCcCCEEECCCCccce-ec--cccCC-
Confidence 6666665444321 01 25666666666666 333221 2245667777776654333 22 33455
Q ss_pred ccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccc
Q 021667 242 RIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIE 281 (309)
Q Consensus 242 ~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~ 281 (309)
+|+.|++++|.+++.. +. ..+.++.++++++.
T Consensus 192 ~L~~L~l~~N~l~~~~---l~-----~l~~L~~L~Ls~N~ 223 (457)
T 3bz5_A 192 LLNRLNCDTNNITKLD---LN-----QNIQLTFLDCSSNK 223 (457)
T ss_dssp TCCEEECCSSCCSCCC---CT-----TCTTCSEEECCSSC
T ss_pred CCCEEECcCCcCCeec---cc-----cCCCCCEEECcCCc
Confidence 7777777777766542 21 33455555555543
No 87
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.69 E-value=3.9e-07 Score=71.13 Aligned_cols=57 Identities=11% Similarity=0.215 Sum_probs=32.2
Q ss_pred HHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcC---CCcCEEEecCCCCCHHHHHHHH
Q 021667 100 LLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGF---PLLEELELSYCSLSQEALEAVG 156 (309)
Q Consensus 100 ~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~L~~~~~~~~~~~~l~ 156 (309)
.+..+...-+.|++|+|.+...+++.+...+...+ ..|++|+|++|.+++.+...++
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA 91 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLI 91 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHH
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHH
Confidence 44445555566666666643456666555444433 5666666666666666554444
No 88
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.69 E-value=1.5e-10 Score=106.59 Aligned_cols=160 Identities=13% Similarity=0.012 Sum_probs=89.1
Q ss_pred cCCCccEEEeCCCCCCCHHH-HHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHH
Q 021667 107 RSRNLRNLRLVSCYNISDQG-FCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKA 185 (309)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 185 (309)
.+++|+.|+++++ .++..+ ....+..+++|++|++++|.+...... ...+++|+.|++.++.+... ....
T Consensus 345 ~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~l~~L~~L~l~~n~l~~~------~~~~ 415 (570)
T 2z63_A 345 DLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN--FLGLEQLEHLDFQHSNLKQM------SEFS 415 (570)
T ss_dssp BCTTCCEEECCSS-CCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE--EETCTTCCEEECTTSEEESC------TTSC
T ss_pred cCCCCCEEeCcCC-ccCccccccccccccCccCEEECCCCcccccccc--ccccCCCCEEEccCCccccc------cchh
Confidence 3555666666543 222110 012233456666666666643221100 23456667776665433211 0001
Q ss_pred HHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcC-chhHHHHHhHhccCceecCCCCCCchhhhhhhhh
Q 021667 186 IAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVN-LVGKLGKICAERIRDLRHPNDSTHDYEFGADFQD 264 (309)
Q Consensus 186 l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~-~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~ 264 (309)
....+++|++|++++|.++.... ..+..+++|++|++++|.... ........++ +|+.|++++|.+++.....+.
T Consensus 416 ~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~-~L~~L~l~~n~l~~~~~~~~~-- 491 (570)
T 2z63_A 416 VFLSLRNLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELR-NLTFLDLSQCQLEQLSPTAFN-- 491 (570)
T ss_dssp TTTTCTTCCEEECTTSCCEECCT-TTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-TCCEEECTTSCCCEECTTTTT--
T ss_pred hhhcCCCCCEEeCcCCcccccch-hhhhcCCcCcEEECcCCcCccccchhhhhccc-CCCEEECCCCccccCChhhhh--
Confidence 12267788888888886553221 223467888888888876542 2223344567 899999999988776555554
Q ss_pred hccCCcCCCCCCCCcccc
Q 021667 265 FCWSSVEDYPSGISDIEL 282 (309)
Q Consensus 265 ~c~~~~~l~~~~~s~~~~ 282 (309)
..+.++.++++++..
T Consensus 492 ---~l~~L~~L~l~~n~l 506 (570)
T 2z63_A 492 ---SLSSLQVLNMASNQL 506 (570)
T ss_dssp ---TCTTCCEEECCSSCC
T ss_pred ---cccCCCEEeCCCCcC
Confidence 556778888887754
No 89
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.69 E-value=2.8e-07 Score=71.92 Aligned_cols=124 Identities=15% Similarity=0.099 Sum_probs=94.0
Q ss_pred HHHHHHHHhcCCCcCEEEecCC-CCCHHHHHHHHhcC---CCCcEEEeccCCCCCCCcccchhHHHHH---hcCCCCcEE
Q 021667 124 DQGFCEAIKGFPLLEELELSYC-SLSQEALEAVGSLC---PLLRSFKLNNRGHRCPKIECDDDAKAIA---ENMHGLRHL 196 (309)
Q Consensus 124 ~~~~~~~~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~l~---~~~~~L~~L 196 (309)
++.+..+...-+.|++|+|+++ .+++.+...++..+ ..|+.|+|+++.+. +.++.+++ +..+.|++|
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig------d~ga~alA~aL~~N~tL~~L 103 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS------DSEARGLIELIETSPSLRVL 103 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB------HHHHTTHHHHHHHCSSCCEE
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC------hHHHHHHHHHHhcCCccCeE
Confidence 4567777777899999999996 99999988777554 68999999986664 44444332 367899999
Q ss_pred EecCCccChHHHHHHHHhCC---CCCeeecCCCC--CcCch-----hHHHHHhHhccCceecCCCCCC
Q 021667 197 QLFGNELTNVGLQAILDACP---HLESLDLRQCF--NVNLV-----GKLGKICAERIRDLRHPNDSTH 254 (309)
Q Consensus 197 ~l~~~~i~~~~l~~l~~~~~---~L~~L~l~~c~--~~~~~-----~~l~~~~~~~L~~L~l~~~~~~ 254 (309)
+|.+|.|++.|...+++.+. .|++|+|+++. .+++. ......-+ +|++|+++.+.+.
T Consensus 104 ~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~-tL~~L~l~~~~~g 170 (197)
T 1pgv_A 104 NVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENE-SLLRVGISFASME 170 (197)
T ss_dssp ECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCS-SCCEEECCCCCHH
T ss_pred ecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCC-CcCeEeccCCCcc
Confidence 99999999999999988764 49999998764 34442 22233344 8999999877653
No 90
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.69 E-value=9.4e-10 Score=106.00 Aligned_cols=164 Identities=15% Similarity=0.057 Sum_probs=89.7
Q ss_pred CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667 84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL 162 (309)
Q Consensus 84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L 162 (309)
.+.++.|++++ .++... ......+++|+.|+++++..+..- -...+..+++|+.|+|++|.+...... ....+++|
T Consensus 23 p~~l~~LdLs~N~i~~i~-~~~~~~l~~L~~LdLs~n~~~~~i-~~~~f~~L~~L~~L~Ls~N~l~~~~p~-~~~~l~~L 99 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVT-ASSFPFLEQLQLLELGSQYTPLTI-DKEAFRNLPNLRILDLGSSKIYFLHPD-AFQGLFHL 99 (844)
T ss_dssp CTTCCEEEEESCCCCEEC-SSSCSSCCSCSEEEECTTCCCCEE-CTTTTSSCTTCCEEECTTCCCCEECTT-SSCSCSSC
T ss_pred CCCcCEEECCCCcCCccC-hhHCcccccCeEEeCCCCCCcccc-CHHHhcCCCCCCEEECCCCcCcccCHh-HccCCccc
Confidence 35667777743 222211 111234778888888766332211 012245677888888888765432111 22457788
Q ss_pred cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHh--H
Q 021667 163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKIC--A 240 (309)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~--~ 240 (309)
++|+++++.+...... . ..+ ..+++|++|++++|.++.......+..+++|++|++++|............+ +
T Consensus 100 ~~L~Ls~n~l~~~~~~-~---~~~-~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~ 174 (844)
T 3j0a_A 100 FELRLYFCGLSDAVLK-D---GYF-RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174 (844)
T ss_dssp CCEECTTCCCSSCCST-T---CCC-SSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHC
T ss_pred CEeeCcCCCCCccccc-C---ccc-cccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCC
Confidence 8888877655421000 0 012 2677888888888866543333334567788888887765433211111111 4
Q ss_pred hccCceecCCCCCCch
Q 021667 241 ERIRDLRHPNDSTHDY 256 (309)
Q Consensus 241 ~~L~~L~l~~~~~~d~ 256 (309)
+|+.|++++|.++..
T Consensus 175 -~L~~L~L~~n~l~~~ 189 (844)
T 3j0a_A 175 -TLSFFSLAANSLYSR 189 (844)
T ss_dssp -SSCCCEECCSBSCCC
T ss_pred -ccceEECCCCccccc
Confidence 777777777776543
No 91
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.67 E-value=4.7e-09 Score=88.22 Aligned_cols=178 Identities=19% Similarity=0.119 Sum_probs=114.3
Q ss_pred CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667 84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL 162 (309)
Q Consensus 84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L 162 (309)
.+.++.|++.. .++... ......+++|+.|+++++ .++.... ...+++|++|++++|.+.. +......+++|
T Consensus 30 ~~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L 102 (290)
T 1p9a_G 30 PKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRA-ELTKLQV---DGTLPVLGTLDLSHNQLQS--LPLLGQTLPAL 102 (290)
T ss_dssp CTTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTS-CCCEEEC---CSCCTTCCEEECCSSCCSS--CCCCTTTCTTC
T ss_pred CCCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCC-ccCcccC---CCCCCcCCEEECCCCcCCc--CchhhccCCCC
Confidence 35788888854 333221 122335889999999965 4543211 1468999999999996652 22223567899
Q ss_pred cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhc
Q 021667 163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAER 242 (309)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~ 242 (309)
+.|+++++.+... . ...+ ..+++|++|++++|.++.-. ...+..+++|+.|++++|....-.......++ +
T Consensus 103 ~~L~l~~N~l~~l--~----~~~~-~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~-~ 173 (290)
T 1p9a_G 103 TVLDVSFNRLTSL--P----LGAL-RGLGELQELYLKGNELKTLP-PGLLTPTPKLEKLSLANNNLTELPAGLLNGLE-N 173 (290)
T ss_dssp CEEECCSSCCCCC--C----SSTT-TTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCT-T
T ss_pred CEEECCCCcCccc--C----HHHH-cCCCCCCEEECCCCCCCccC-hhhcccccCCCEEECCCCcCCccCHHHhcCcC-C
Confidence 9999998665422 1 0112 27889999999999776321 12334678999999998876554444445667 9
Q ss_pred cCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccC
Q 021667 243 IRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELV 283 (309)
Q Consensus 243 L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~ 283 (309)
|+.|++++|.++......+ ....+..+++++....
T Consensus 174 L~~L~L~~N~l~~ip~~~~------~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 174 LDTLLLQENSLYTIPKGFF------GSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCEEECCSSCCCCCCTTTT------TTCCCSEEECCSCCBC
T ss_pred CCEEECCCCcCCccChhhc------ccccCCeEEeCCCCcc
Confidence 9999999999874433222 3345666666655443
No 92
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.67 E-value=1.1e-09 Score=88.16 Aligned_cols=134 Identities=13% Similarity=0.090 Sum_probs=74.8
Q ss_pred CCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHh
Q 021667 109 RNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAE 188 (309)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 188 (309)
+.++.|+++++ .++.......+..+++|++|+|++|.++.... .....+++|+.|+++++.+... . .....
T Consensus 32 ~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~N~l~~~--~-----~~~~~ 102 (220)
T 2v70_A 32 QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEE-GAFEGASGVNEILLTSNRLENV--Q-----HKMFK 102 (220)
T ss_dssp TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCCC--C-----GGGGT
T ss_pred CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECH-HHhCCCCCCCEEECCCCccCcc--C-----HhHhc
Confidence 34566776644 33322111224457777777777775543211 1123467777777776555322 1 11122
Q ss_pred cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCC
Q 021667 189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDST 253 (309)
Q Consensus 189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~ 253 (309)
.+++|++|++++|.++..... .+..+++|+.|++++|...+........++ +|+.|++++|++
T Consensus 103 ~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l 165 (220)
T 2v70_A 103 GLESLKTLMLRSNRITCVGND-SFIGLSSVRLLSLYDNQITTVAPGAFDTLH-SLSTLNLLANPF 165 (220)
T ss_dssp TCSSCCEEECTTSCCCCBCTT-SSTTCTTCSEEECTTSCCCCBCTTTTTTCT-TCCEEECCSCCE
T ss_pred CCcCCCEEECCCCcCCeECHh-HcCCCccCCEEECCCCcCCEECHHHhcCCC-CCCEEEecCcCC
Confidence 677788888887766532111 123567788888877665443233334556 788888888875
No 93
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.67 E-value=1.2e-09 Score=91.18 Aligned_cols=138 Identities=14% Similarity=0.153 Sum_probs=92.9
Q ss_pred CCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHh
Q 021667 109 RNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAE 188 (309)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 188 (309)
++|++|+++++ .++.... ..+..+++|++|++++|.+...... ....+++|++|+++++.+... ....+.
T Consensus 28 ~~l~~L~ls~n-~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~------~~~~~~- 97 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGS-YSFFSFPELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNPIQSL------ALGAFS- 97 (276)
T ss_dssp TTCCEEECTTC-CCCEECT-TTTTTCTTCSEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCCEE------CTTTTT-
T ss_pred CCccEEECCCC-cccccCH-hHhccccCCcEEECCCCcCCccCHH-HccCCcCCCEEECCCCccCcc------Chhhhc-
Confidence 47899999865 4543221 1345689999999999976532211 234578999999987655321 111223
Q ss_pred cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCc-hhHHHHHhHhccCceecCCCCCCchhh
Q 021667 189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNL-VGKLGKICAERIRDLRHPNDSTHDYEF 258 (309)
Q Consensus 189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~-~~~l~~~~~~~L~~L~l~~~~~~d~~~ 258 (309)
.+++|++|++.+|.++...... +..+++|++|+++++..... .......++ +|++|++++|.+++...
T Consensus 98 ~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~-~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 98 GLSSLQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp TCTTCCEEECTTSCCCCSTTCC-CTTCTTCCEEECCSSCCCCCCCCGGGGGCT-TCCEEECCSSCCCEECG
T ss_pred CCccccEEECCCCCccccCchh-cccCCCCCEEECcCCccceecCchhhccCC-CCCEEECCCCCCCcCCH
Confidence 7899999999999766422211 34689999999999875542 234445667 99999999999876543
No 94
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.67 E-value=2.2e-09 Score=86.95 Aligned_cols=133 Identities=18% Similarity=0.094 Sum_probs=82.0
Q ss_pred CCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHh
Q 021667 109 RNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAE 188 (309)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 188 (309)
++|+.|+|+++ .++... ...+..+++|++|+|++|.+..-. ......+++|+.|+++++.+... . .....
T Consensus 40 ~~L~~L~Ls~n-~i~~~~-~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~l~~l--~-----~~~~~ 109 (229)
T 3e6j_A 40 TNAQILYLHDN-QITKLE-PGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQLTVL--P-----SAVFD 109 (229)
T ss_dssp TTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCC--C-----TTTTT
T ss_pred CCCCEEEcCCC-ccCccC-HHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCCcCCcc--C-----hhHhC
Confidence 67888888765 333211 123445788888888888654211 11224578888888887655422 1 11122
Q ss_pred cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCC
Q 021667 189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTH 254 (309)
Q Consensus 189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~ 254 (309)
.+++|++|++++|.++. +..-+..+++|++|+++++....-.......++ +|+.|++++|+++
T Consensus 110 ~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 110 RLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS-SLTHAYLFGNPWD 172 (229)
T ss_dssp TCTTCCEEECCSSCCCS--CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECTTSCBC
T ss_pred cchhhCeEeccCCcccc--cCcccccCCCCCEEECCCCcCCccCHHHHhCCC-CCCEEEeeCCCcc
Confidence 67888888888887662 212235678888888888765443333445566 8888888888864
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.66 E-value=2.3e-09 Score=85.46 Aligned_cols=112 Identities=15% Similarity=0.120 Sum_probs=52.0
Q ss_pred hcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHH
Q 021667 132 KGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAI 211 (309)
Q Consensus 132 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l 211 (309)
..+++|++|+++++.+... .......+++|++|+++++.+... . ......+++|++|++++|.++.... ..
T Consensus 49 ~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~--~-----~~~~~~l~~L~~L~L~~N~l~~~~~-~~ 119 (208)
T 2o6s_A 49 DELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQSL--P-----NGVFDKLTQLKELALNTNQLQSLPD-GV 119 (208)
T ss_dssp TTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCC--C-----TTTTTTCTTCCEEECCSSCCCCCCT-TT
T ss_pred cccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcCCcc--C-----HhHhcCccCCCEEEcCCCcCcccCH-hH
Confidence 3455666666666544321 011123355666666655443311 0 0111245666666666665442111 11
Q ss_pred HHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCC
Q 021667 212 LDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDST 253 (309)
Q Consensus 212 ~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~ 253 (309)
+..+++|++|+++++............++ +|+.|++++|++
T Consensus 120 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~l~~N~~ 160 (208)
T 2o6s_A 120 FDKLTQLKDLRLYQNQLKSVPDGVFDRLT-SLQYIWLHDNPW 160 (208)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCSCCB
T ss_pred hccCCcCCEEECCCCccceeCHHHhccCC-CccEEEecCCCe
Confidence 23455666666666543332222233445 666666666654
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.66 E-value=3.7e-09 Score=84.23 Aligned_cols=137 Identities=16% Similarity=0.073 Sum_probs=95.2
Q ss_pred CCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHH
Q 021667 134 FPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILD 213 (309)
Q Consensus 134 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~ 213 (309)
.++|++|+++++.++... ......+++|++|+++++.+... . ......+++|++|++++|.++.-. ...+.
T Consensus 27 ~~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~--~-----~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~ 97 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLP-NGVFDELTSLTQLYLGGNKLQSL--P-----NGVFNKLTSLTYLNLSTNQLQSLP-NGVFD 97 (208)
T ss_dssp CTTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCCCC--C-----TTTTTTCTTCCEEECCSSCCCCCC-TTTTT
T ss_pred CCCCcEEEcCCCccCcCC-hhhhcccccCcEEECCCCccCcc--C-----hhhcCCCCCcCEEECCCCcCCccC-HhHhc
Confidence 468999999999665321 12235689999999998665422 1 112237899999999999776321 12245
Q ss_pred hCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccCCC
Q 021667 214 ACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSD 285 (309)
Q Consensus 214 ~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~d 285 (309)
.+++|++|+++++............++ +|++|++++|.+++.....+. ..+.++.+++++.....+
T Consensus 98 ~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~-----~l~~L~~L~l~~N~~~~~ 163 (208)
T 2o6s_A 98 KLTQLKELALNTNQLQSLPDGVFDKLT-QLKDLRLYQNQLKSVPDGVFD-----RLTSLQYIWLHDNPWDCT 163 (208)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCSCCCTTTTT-----TCTTCCEEECCSCCBCCC
T ss_pred CccCCCEEEcCCCcCcccCHhHhccCC-cCCEEECCCCccceeCHHHhc-----cCCCccEEEecCCCeecC
Confidence 789999999999875543334445677 999999999998765554443 456788888887766544
No 97
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.66 E-value=1.5e-08 Score=87.48 Aligned_cols=161 Identities=13% Similarity=0.070 Sum_probs=78.8
Q ss_pred CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667 84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL 162 (309)
Q Consensus 84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L 162 (309)
.++++.|++.. .++.-........+++|++|++.++..++... ...+..+++|++|++++|.+....... ...+++|
T Consensus 123 l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L 200 (353)
T 2z80_A 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ-RKDFAGLTFLEELEIDASDLQSYEPKS-LKSIQNV 200 (353)
T ss_dssp CTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEE
T ss_pred CccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC-HHHccCCCCCCEEECCCCCcCccCHHH-HhccccC
Confidence 56778888753 22210000122346777777777553232211 112234566666666665443221111 1224455
Q ss_pred cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEe---------------------------cCCccChHHHHH---HH
Q 021667 163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQL---------------------------FGNELTNVGLQA---IL 212 (309)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l---------------------------~~~~i~~~~l~~---l~ 212 (309)
++|+++++.+. .........+++|+.|++ .++.+++.++.. .+
T Consensus 201 ~~L~l~~n~l~-------~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l 273 (353)
T 2z80_A 201 SHLILHMKQHI-------LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL 273 (353)
T ss_dssp EEEEEECSCST-------THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHH
T ss_pred CeecCCCCccc-------cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHH
Confidence 55555543221 111112223444455444 444444444333 24
Q ss_pred HhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCC
Q 021667 213 DACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTH 254 (309)
Q Consensus 213 ~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~ 254 (309)
..+++|+.|++++|...+-...+...++ +|+.|++++|+++
T Consensus 274 ~~l~~L~~L~Ls~N~l~~i~~~~~~~l~-~L~~L~L~~N~~~ 314 (353)
T 2z80_A 274 NQISGLLELEFSRNQLKSVPDGIFDRLT-SLQKIWLHTNPWD 314 (353)
T ss_dssp HTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCBC
T ss_pred hcccCCCEEECCCCCCCccCHHHHhcCC-CCCEEEeeCCCcc
Confidence 4677788888877765433333335566 7888888888753
No 98
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.66 E-value=2.1e-07 Score=80.44 Aligned_cols=157 Identities=15% Similarity=0.180 Sum_probs=105.1
Q ss_pred cCCCceEEeccccCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHh-cCCCcCEEEecCC--C-CCHH---HHHHH
Q 021667 83 SNGQLLSINIEYFGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIK-GFPLLEELELSYC--S-LSQE---ALEAV 155 (309)
Q Consensus 83 ~~~~l~~l~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~L~~~--~-~~~~---~~~~l 155 (309)
..|+|+.|.+....... +..+ ..++|++|.|..+ .++..++..+.. .+|+|++|+|+.+ . ..+. .+..+
T Consensus 170 ~~P~L~~L~L~g~~~l~-l~~~--~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLS-IGKK--PRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp TCTTCCEEEEECCBTCB-CCSC--BCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred cCCCCcEEEEeCCCCce-eccc--cCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 36899999995431111 1111 3789999999955 788888887764 6899999999642 1 1111 12222
Q ss_pred H--hcCCCCcEEEeccCCCCCCCcccchhHHHHH--hcCCCCcEEEecCCccChHHHHHHHH---hCCCCCeeecCCCCC
Q 021667 156 G--SLCPLLRSFKLNNRGHRCPKIECDDDAKAIA--ENMHGLRHLQLFGNELTNVGLQAILD---ACPHLESLDLRQCFN 228 (309)
Q Consensus 156 ~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~--~~~~~L~~L~l~~~~i~~~~l~~l~~---~~~~L~~L~l~~c~~ 228 (309)
. ..+|+|+.|.+.+|.+. +.....++ ..+|+|++|+|+.|.+++.+...+.. .+++|+.|+|++|.
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~------~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~- 318 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQ------NVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY- 318 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTH------HHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB-
T ss_pred HhcCCCCCcCEEeCCCCCCc------hHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc-
Confidence 2 35899999999865442 33444454 36889999999999999999888764 47899999999875
Q ss_pred cCchhHHHHHhHhcc-CceecCCCC
Q 021667 229 VNLVGKLGKICAERI-RDLRHPNDS 252 (309)
Q Consensus 229 ~~~~~~l~~~~~~~L-~~L~l~~~~ 252 (309)
+++.. .....+.+ ..++++++.
T Consensus 319 i~d~~--~~~l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 319 LSDEM--KKELQKSLPMKIDVSDSQ 341 (362)
T ss_dssp CCHHH--HHHHHHHCCSEEECCSBC
T ss_pred CCHHH--HHHHHHHcCCEEEecCCc
Confidence 55422 22222113 557887766
No 99
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.65 E-value=4.7e-09 Score=81.36 Aligned_cols=131 Identities=15% Similarity=0.140 Sum_probs=92.1
Q ss_pred cCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHH
Q 021667 133 GFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAIL 212 (309)
Q Consensus 133 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~ 212 (309)
.+++|++|++++|.++. +..+....++|+.|+++++.+... ..+. .+++|++|++++|.++.-. ..++
T Consensus 17 ~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~--------~~l~-~l~~L~~L~Ls~N~l~~~~-~~~~ 84 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKL--------DGFP-LLRRLKTLLVNNNRICRIG-EGLD 84 (176)
T ss_dssp CTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEE--------CCCC-CCSSCCEEECCSSCCCEEC-SCHH
T ss_pred CcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCcc--------cccc-cCCCCCEEECCCCcccccC-cchh
Confidence 46899999999997763 234455566999999998665421 2233 7899999999999887421 1234
Q ss_pred HhCCCCCeeecCCCCCcCchhH--HHHHhHhccCceecCCCCCCchhhh---hhhhhhccCCcCCCCCCCCcccc
Q 021667 213 DACPHLESLDLRQCFNVNLVGK--LGKICAERIRDLRHPNDSTHDYEFG---ADFQDFCWSSVEDYPSGISDIEL 282 (309)
Q Consensus 213 ~~~~~L~~L~l~~c~~~~~~~~--l~~~~~~~L~~L~l~~~~~~d~~~~---~~~~~~c~~~~~l~~~~~s~~~~ 282 (309)
..+++|++|++++|... .... ....++ +|+.|++++|++++.... .+. ..+.+..+|++.+..
T Consensus 85 ~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~-~L~~L~l~~N~i~~~~~~~~~~~~-----~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 85 QALPDLTELILTNNSLV-ELGDLDPLASLK-SLTYLCILRNPVTNKKHYRLYVIY-----KVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHCTTCCEEECCSCCCC-CGGGGGGGGGCT-TCCEEECCSSGGGGSTTHHHHHHH-----HCTTCSEETTEECCH
T ss_pred hcCCCCCEEECCCCcCC-cchhhHhhhcCC-CCCEEEecCCCCCCcHhHHHHHHH-----HCCccceeCCCcCCH
Confidence 57999999999998753 3333 345677 999999999998644322 232 456777778776543
No 100
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.65 E-value=9e-10 Score=102.17 Aligned_cols=163 Identities=12% Similarity=0.028 Sum_probs=94.1
Q ss_pred cCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHH
Q 021667 107 RSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAI 186 (309)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l 186 (309)
.+++|+.|++.++ .++.......+..+++|++|++++|.+..... .....+++|++|+++++.+... .....
T Consensus 397 ~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~------~~~~~ 468 (606)
T 3vq2_A 397 GLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD-GIFLGLTSLNTLKMAGNSFKDN------TLSNV 468 (606)
T ss_dssp TCTTCCEEECTTS-EEESTTTTTTTTTCTTCCEEECTTSCCEECCT-TTTTTCTTCCEEECTTCEEGGG------EECSC
T ss_pred CCCCCCeeECCCC-ccCCccChhhhhccccCCEEECcCCCCCccch-hhhcCCCCCCEEECCCCcCCCc------chHHh
Confidence 4788889988865 33222111234567888888888885543211 1234578888888876544310 01111
Q ss_pred HhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhc
Q 021667 187 AENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFC 266 (309)
Q Consensus 187 ~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c 266 (309)
...+++|++|++++|.++..... .+..+++|++|++++|...+........++ +|+.|++++|.++..... +.
T Consensus 469 ~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~p~~-~~---- 541 (606)
T 3vq2_A 469 FANTTNLTFLDLSKCQLEQISWG-VFDTLHRLQLLNMSHNNLLFLDSSHYNQLY-SLSTLDCSFNRIETSKGI-LQ---- 541 (606)
T ss_dssp CTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCSCEEGGGTTTCT-TCCEEECTTSCCCCEESC-GG----
T ss_pred hccCCCCCEEECCCCcCCccChh-hhcccccCCEEECCCCcCCCcCHHHccCCC-cCCEEECCCCcCcccCHh-Hh----
Confidence 22677888888888866643222 233577788888887765554334444556 788888888877643222 21
Q ss_pred cCCc-CCCCCCCCccccCCC
Q 021667 267 WSSV-EDYPSGISDIELVSD 285 (309)
Q Consensus 267 ~~~~-~l~~~~~s~~~~~~d 285 (309)
..+ .+..+++++....-|
T Consensus 542 -~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 542 -HFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp -GSCTTCCEEECCSCCCCCS
T ss_pred -hhcccCcEEEccCCCcccC
Confidence 222 356666666555433
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.65 E-value=5.7e-09 Score=86.41 Aligned_cols=149 Identities=18% Similarity=0.129 Sum_probs=105.7
Q ss_pred cCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHH
Q 021667 107 RSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAI 186 (309)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l 186 (309)
.+++|+.|++.++ .++.. . -+..+++|++|+|++|.+++... ...+++|+.|+++++.+... . .+
T Consensus 39 ~l~~L~~L~l~~n-~i~~l--~-~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l~~l--~------~~ 103 (263)
T 1xeu_A 39 ELSGVQNFNGDNS-NIQSL--A-GMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKNL--N------GI 103 (263)
T ss_dssp HHTTCSEEECTTS-CCCCC--T-TGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCCSCC--T------TC
T ss_pred hcCcCcEEECcCC-Ccccc--h-HHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCccCCc--C------cc
Confidence 3689999999976 45432 1 24578999999999997764322 45689999999998766532 1 11
Q ss_pred HhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhc
Q 021667 187 AENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFC 266 (309)
Q Consensus 187 ~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c 266 (309)
. . ++|++|++++|.++.- . -+..+++|+.|++++|...+ .. ....++ +|+.|++++|.+++. ..+.
T Consensus 104 ~-~-~~L~~L~L~~N~l~~~--~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~-~L~~L~L~~N~i~~~--~~l~---- 169 (263)
T 1xeu_A 104 P-S-ACLSRLFLDNNELRDT--D-SLIHLKNLEILSIRNNKLKS-IV-MLGFLS-KLEVLDLHGNEITNT--GGLT---- 169 (263)
T ss_dssp C-C-SSCCEEECCSSCCSBS--G-GGTTCTTCCEEECTTSCCCB-CG-GGGGCT-TCCEEECTTSCCCBC--TTST----
T ss_pred c-c-CcccEEEccCCccCCC--h-hhcCcccccEEECCCCcCCC-Ch-HHccCC-CCCEEECCCCcCcch--HHhc----
Confidence 2 2 8999999999988753 2 24578999999999877443 33 344567 899999999998876 3333
Q ss_pred cCCcCCCCCCCCccccCCC
Q 021667 267 WSSVEDYPSGISDIELVSD 285 (309)
Q Consensus 267 ~~~~~l~~~~~s~~~~~~d 285 (309)
..+.+..+++++......
T Consensus 170 -~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 170 -RLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -TCCCCCEEEEEEEEEECC
T ss_pred -cCCCCCEEeCCCCcccCC
Confidence 456777777777665443
No 102
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.64 E-value=1.4e-09 Score=98.12 Aligned_cols=152 Identities=14% Similarity=-0.021 Sum_probs=92.0
Q ss_pred CCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHh
Q 021667 109 RNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAE 188 (309)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 188 (309)
++|+.|+++++ .++... ...+++|+.|+|++|.++...... ...+++|+.|+++++.+.. .....+..
T Consensus 99 ~~L~~L~L~~N-~l~~~~----~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~------~~~~~l~~ 166 (487)
T 3oja_A 99 PSIETLHAANN-NISRVS----CSRGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDT------VNFAELAA 166 (487)
T ss_dssp TTCCEEECCSS-CCCCEE----ECCCSSCEEEECCSSCCCSGGGBC-GGGGSSEEEEECTTSCCCE------EEGGGGGG
T ss_pred CCcCEEECcCC-cCCCCC----ccccCCCCEEECCCCCCCCCCchh-hcCCCCCCEEECCCCCCCC------cChHHHhh
Confidence 55556665544 333211 124678889999888766432111 2347888899888765542 12233334
Q ss_pred cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccC
Q 021667 189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWS 268 (309)
Q Consensus 189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~ 268 (309)
.+++|++|+|++|.++... . ...+++|+.|++++|........ ...++ +|+.|++++|.++..... +. .
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~--~-~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~-~L~~L~Ls~N~l~~lp~~-l~-----~ 235 (487)
T 3oja_A 167 SSDTLEHLNLQYNFIYDVK--G-QVVFAKLKTLDLSSNKLAFMGPE-FQSAA-GVTWISLRNNKLVLIEKA-LR-----F 235 (487)
T ss_dssp GTTTCCEEECTTSCCCEEE--C-CCCCTTCCEEECCSSCCCEECGG-GGGGT-TCSEEECTTSCCCEECTT-CC-----C
T ss_pred hCCcccEEecCCCcccccc--c-cccCCCCCEEECCCCCCCCCCHh-HcCCC-CccEEEecCCcCcccchh-hc-----c
Confidence 6788999999988776431 1 11477889999988765443233 44566 889999999887642111 11 3
Q ss_pred CcCCCCCCCCccccC
Q 021667 269 SVEDYPSGISDIELV 283 (309)
Q Consensus 269 ~~~l~~~~~s~~~~~ 283 (309)
.+.+..++++++...
T Consensus 236 l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 236 SQNLEHFDLRGNGFH 250 (487)
T ss_dssp CTTCCEEECTTCCBC
T ss_pred CCCCCEEEcCCCCCc
Confidence 456667777766554
No 103
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.62 E-value=5.6e-09 Score=96.71 Aligned_cols=40 Identities=18% Similarity=0.049 Sum_probs=16.8
Q ss_pred hCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCC
Q 021667 214 ACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTH 254 (309)
Q Consensus 214 ~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~ 254 (309)
.+++|+.|++++|............++ +|+.|+|++|.++
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~ 291 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPFVKMQ-RLERLYISNNRLV 291 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCS-SCCEEECTTSCCC
T ss_pred cCCCCCEEECCCCccCCCCHHHhcCcc-CCCEEECCCCCCC
Confidence 344444444444433222122222334 4555555555544
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.62 E-value=3.3e-09 Score=85.37 Aligned_cols=141 Identities=16% Similarity=0.104 Sum_probs=96.9
Q ss_pred CCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHh
Q 021667 109 RNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAE 188 (309)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 188 (309)
++|+.|++.++ .++... ...+..+++|+.|+|++|.+...... ....+++|+.|+++++.+... . .....
T Consensus 32 ~~l~~L~l~~n-~i~~i~-~~~~~~l~~L~~L~Ls~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~l--~-----~~~f~ 101 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVIP-PGAFSPYKKLRRIDLSNNQISELAPD-AFQGLRSLNSLVLYGNKITEL--P-----KSLFE 101 (220)
T ss_dssp TTCCEEECCSS-CCCEEC-TTSSTTCTTCCEEECCSSCCCEECTT-TTTTCSSCCEEECCSSCCCCC--C-----TTTTT
T ss_pred cCCCEEECCCC-cCCCcC-HhHhhCCCCCCEEECCCCcCCCcCHH-HhhCCcCCCEEECCCCcCCcc--C-----HhHcc
Confidence 68999999965 444211 11345689999999999977542112 234579999999998766522 1 11223
Q ss_pred cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCC-Cchhhhhh
Q 021667 189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDST-HDYEFGAD 261 (309)
Q Consensus 189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~-~d~~~~~~ 261 (309)
.+++|++|+|++|.++..... .+..+++|++|++++|...+........++ +|+.|++++|++ -|..+..+
T Consensus 102 ~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~~~c~c~l~~l 173 (220)
T 2v9t_B 102 GLFSLQLLLLNANKINCLRVD-AFQDLHNLNLLSLYDNKLQTIAKGTFSPLR-AIQTMHLAQNPFICDCHLKWL 173 (220)
T ss_dssp TCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCSSCEECSGGGHHH
T ss_pred CCCCCCEEECCCCCCCEeCHH-HcCCCCCCCEEECCCCcCCEECHHHHhCCC-CCCEEEeCCCCcCCCCccHHH
Confidence 789999999999977643222 234689999999999876554434445567 999999999996 45555444
No 105
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.61 E-value=7.5e-09 Score=95.17 Aligned_cols=134 Identities=13% Similarity=0.124 Sum_probs=58.1
Q ss_pred cCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHH-HHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHH
Q 021667 107 RSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQE-ALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKA 185 (309)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 185 (309)
.+++|++|+++++ .++.. ....+..+++|++|++++|.++.- .+......+++|+.|+++++.+... +. ..
T Consensus 351 ~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~-----~~ 422 (562)
T 3a79_B 351 SPSSFTFLNFTQN-VFTDS-VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH-AY-----DR 422 (562)
T ss_dssp SCCCCCEEECCSS-CCCTT-TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSC-CS-----SC
T ss_pred CCCCceEEECCCC-ccccc-hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCc-cC-----hh
Confidence 3566666666644 33321 111223456666666666655431 1122223456666666665443320 00 00
Q ss_pred HHhcCCCCcEEEecCCccChHHHHHHHHhC-CCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCC
Q 021667 186 IAENMHGLRHLQLFGNELTNVGLQAILDAC-PHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTH 254 (309)
Q Consensus 186 l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~-~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~ 254 (309)
....+++|++|++++|.++.... ... ++|+.|++++|....-...+. .++ +|+.|++++|.++
T Consensus 423 ~~~~l~~L~~L~l~~n~l~~~~~----~~l~~~L~~L~L~~N~l~~ip~~~~-~l~-~L~~L~L~~N~l~ 486 (562)
T 3a79_B 423 TCAWAESILVLNLSSNMLTGSVF----RCLPPKVKVLDLHNNRIMSIPKDVT-HLQ-ALQELNVASNQLK 486 (562)
T ss_dssp CCCCCTTCCEEECCSSCCCGGGG----SSCCTTCSEEECCSSCCCCCCTTTT-SSC-CCSEEECCSSCCC
T ss_pred hhcCcccCCEEECCCCCCCcchh----hhhcCcCCEEECCCCcCcccChhhc-CCC-CCCEEECCCCCCC
Confidence 11134555555555555543211 122 345555555543222111122 344 5555555555544
No 106
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.60 E-value=7.7e-09 Score=97.22 Aligned_cols=184 Identities=16% Similarity=0.068 Sum_probs=97.0
Q ss_pred CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667 84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL 162 (309)
Q Consensus 84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L 162 (309)
.+.++.|+++. .++...-.. ...+++|++|+++++ .++... ...+..+++|++|++++|.+...... ....+++|
T Consensus 48 l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~l~-~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L 123 (680)
T 1ziw_A 48 YSQLTSLDVGFNTISKLEPEL-CQKLPMLKVLNLQHN-ELSQLS-DKTFAFCTNLTELHLMSNSIQKIKNN-PFVKQKNL 123 (680)
T ss_dssp GTTCSEEECCSSCCCCCCTTH-HHHCTTCCEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSSCCCCCCSC-TTTTCTTC
T ss_pred CCcCcEEECCCCccCccCHHH-HhcccCcCEEECCCC-ccCccC-hhhhccCCCCCEEECCCCccCccChh-HccccCCC
Confidence 46777777753 232211122 234778888888755 333110 11234577888888887755321111 12346778
Q ss_pred cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHH-HhCCCCCeeecCCCCCcCchhHHHH----
Q 021667 163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAIL-DACPHLESLDLRQCFNVNLVGKLGK---- 237 (309)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~-~~~~~L~~L~l~~c~~~~~~~~l~~---- 237 (309)
++|+++++.+.... ...+ ..+++|++|++++|.++......+. ..+++|+.|++++|...........
T Consensus 124 ~~L~Ls~n~l~~~~------~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 196 (680)
T 1ziw_A 124 ITLDLSHNGLSSTK------LGTQ-VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR 196 (680)
T ss_dssp CEEECCSSCCSCCC------CCSS-SCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSE
T ss_pred CEEECCCCcccccC------chhh-cccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhh
Confidence 88888765543220 0111 2677888888888766533222221 1356788888877643322111111
Q ss_pred -----------------------HhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667 238 -----------------------ICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL 282 (309)
Q Consensus 238 -----------------------~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~ 282 (309)
..+ +|+.|++++|.+++.....+. . + ....++.++++++..
T Consensus 197 L~~L~l~~~~l~~~~~~~~~~~l~~~-~L~~L~L~~n~l~~~~~~~~~-~-l-~~~~L~~L~Ls~n~l 260 (680)
T 1ziw_A 197 LFGLFLNNVQLGPSLTEKLCLELANT-SIRNLSLSNSQLSTTSNTTFL-G-L-KWTNLTMLDLSYNNL 260 (680)
T ss_dssp ECEEECTTCCCHHHHHHHHHHHHTTS-CCCEEECTTSCCCEECTTTTG-G-G-GGSCCCEEECTTSCC
T ss_pred hhhhhccccccChhhHHHHHHHhhhc-cccEEEccCCcccccChhHhh-c-c-CcCCCCEEECCCCCc
Confidence 113 677777777776655444443 1 1 123477777776643
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.60 E-value=4.2e-09 Score=84.79 Aligned_cols=138 Identities=16% Similarity=0.071 Sum_probs=95.7
Q ss_pred CCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHH
Q 021667 134 FPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILD 213 (309)
Q Consensus 134 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~ 213 (309)
.+.+++|+|++|.++..........+++|+.|+++++.+... . ...+. .+++|++|+|++|.++..... .+.
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i----~--~~~~~-~l~~L~~L~Ls~N~l~~~~~~-~~~ 102 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI----E--EGAFE-GASGVNEILLTSNRLENVQHK-MFK 102 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE----C--TTTTT-TCTTCCEEECCSSCCCCCCGG-GGT
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE----C--HHHhC-CCCCCCEEECCCCccCccCHh-Hhc
Confidence 357899999999776432122235689999999997655421 1 11233 789999999999977643222 244
Q ss_pred hCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccCCC
Q 021667 214 ACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSD 285 (309)
Q Consensus 214 ~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~d 285 (309)
.+++|++|+++++............++ +|+.|+|++|.++......+. ..+.+..+++++..+.-|
T Consensus 103 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 103 GLESLKTLMLRSNRITCVGNDSFIGLS-SVRLLSLYDNQITTVAPGAFD-----TLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp TCSSCCEEECTTSCCCCBCTTSSTTCT-TCSEEECTTSCCCCBCTTTTT-----TCTTCCEEECCSCCEECS
T ss_pred CCcCCCEEECCCCcCCeECHhHcCCCc-cCCEEECCCCcCCEECHHHhc-----CCCCCCEEEecCcCCcCC
Confidence 789999999999876554333344567 999999999998776555554 455777778877665444
No 108
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.60 E-value=4.4e-09 Score=98.86 Aligned_cols=161 Identities=17% Similarity=0.123 Sum_probs=105.3
Q ss_pred CCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCc
Q 021667 85 GQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLR 163 (309)
Q Consensus 85 ~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~ 163 (309)
+.++.|+++. .++... ......+++|++|+++++ .++... ...+..+++|++|+|++|.+..-.. .....+++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~ 100 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLP-AANFTRYSQLTSLDVGFN-TISKLE-PELCQKLPMLKVLNLQHNELSQLSD-KTFAFCTNLT 100 (680)
T ss_dssp TTCSEEECCSSCCCCCC-GGGGGGGTTCSEEECCSS-CCCCCC-TTHHHHCTTCCEEECCSSCCCCCCT-TTTTTCTTCS
T ss_pred CCCcEEECCCCCCCCcC-HHHHhCCCcCcEEECCCC-ccCccC-HHHHhcccCcCEEECCCCccCccCh-hhhccCCCCC
Confidence 5788888864 333211 122345899999999965 444221 2235579999999999996653211 1234589999
Q ss_pred EEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHH--HHhHh
Q 021667 164 SFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLG--KICAE 241 (309)
Q Consensus 164 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~--~~~~~ 241 (309)
+|+++++.+... . . ..+. .+++|++|++++|.++...... +..+++|++|++++|.......... ..++
T Consensus 101 ~L~L~~n~l~~~--~-~---~~~~-~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~- 171 (680)
T 1ziw_A 101 ELHLMSNSIQKI--K-N---NPFV-KQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLSNNKIQALKSEELDIFANS- 171 (680)
T ss_dssp EEECCSSCCCCC--C-S---CTTT-TCTTCCEEECCSSCCSCCCCCS-SSCCTTCCEEECCSSCCCCBCHHHHGGGTTC-
T ss_pred EEECCCCccCcc--C-h---hHcc-ccCCCCEEECCCCcccccCchh-hcccccCCEEEccCCcccccCHHHhhccccc-
Confidence 999998665422 1 0 1223 7899999999999776432222 2368899999999987544332222 2346
Q ss_pred ccCceecCCCCCCchhh
Q 021667 242 RIRDLRHPNDSTHDYEF 258 (309)
Q Consensus 242 ~L~~L~l~~~~~~d~~~ 258 (309)
+|++|++++|.+++...
T Consensus 172 ~L~~L~L~~n~l~~~~~ 188 (680)
T 1ziw_A 172 SLKKLELSSNQIKEFSP 188 (680)
T ss_dssp EESEEECTTCCCCCBCT
T ss_pred cccEEECCCCcccccCh
Confidence 89999999998765543
No 109
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.59 E-value=4.7e-09 Score=91.98 Aligned_cols=156 Identities=14% Similarity=0.101 Sum_probs=98.5
Q ss_pred CCCceEEecccc-CChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667 84 NGQLLSINIEYF-GTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL 162 (309)
Q Consensus 84 ~~~l~~l~l~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L 162 (309)
..+++.+++... ++. .-..+...+++|+.|++.++ .++.... ..+..+++|++|+|++|.+..... .....+++|
T Consensus 44 l~~l~~l~l~~~~l~~-l~~~~~~~l~~L~~L~L~~n-~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L 119 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDL-QIEEIDT-YAFAYAHTIQKLYMGFNAIRYLPP-HVFQNVPLL 119 (390)
T ss_dssp GCCCSEEEEESCEESE-ECTHHHHHCCCCSEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTC
T ss_pred cCCceEEEecCCchhh-CChhHhcccccCcEEECCCC-cccccCh-hhccCCCCcCEEECCCCCCCcCCH-HHhcCCCCC
Confidence 457777877542 221 11233345889999999966 4443211 134568999999999996654221 123457899
Q ss_pred cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhc
Q 021667 163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAER 242 (309)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~ 242 (309)
+.|+++++.+... . ..+...+++|++|++++|.++..... .+..+++|++|++++|..... . ...++ +
T Consensus 120 ~~L~L~~n~l~~l--~-----~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~-~--~~~l~-~ 187 (390)
T 3o6n_A 120 TVLVLERNDLSSL--P-----RGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLTHV-D--LSLIP-S 187 (390)
T ss_dssp CEEECCSSCCCCC--C-----TTTTTTCTTCCEEECCSSCCCBCCTT-TTSSCTTCCEEECCSSCCSBC-C--GGGCT-T
T ss_pred CEEECCCCccCcC--C-----HHHhcCCCCCcEEECCCCccCccChh-hccCCCCCCEEECCCCcCCcc-c--ccccc-c
Confidence 9999987665421 1 11223789999999999977643222 234678999999998765432 1 23345 7
Q ss_pred cCceecCCCCCCc
Q 021667 243 IRDLRHPNDSTHD 255 (309)
Q Consensus 243 L~~L~l~~~~~~d 255 (309)
|+.|++++|.++.
T Consensus 188 L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 188 LFHANVSYNLLST 200 (390)
T ss_dssp CSEEECCSSCCSE
T ss_pred cceeecccccccc
Confidence 8888888877654
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.59 E-value=3.4e-09 Score=91.93 Aligned_cols=166 Identities=21% Similarity=0.117 Sum_probs=101.6
Q ss_pred CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667 84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL 162 (309)
Q Consensus 84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L 162 (309)
...++.|++++ .++.-....+...+++|+.|+|.++ .++... ...+..+++|++|+|++|.+.... ......+++|
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L 114 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFIS-SEAFVPVPNLRYLDLSSNHLHTLD-EFLFSDLQAL 114 (361)
T ss_dssp CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTC
T ss_pred CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccC-hhhccCCCCCCEEECCCCcCCcCC-HHHhCCCcCC
Confidence 34577888854 3332111122226889999999865 454221 113456899999999999765321 1123457899
Q ss_pred cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHH--HHhCCCCCeeecCCCCCcCchhHHHHHhH
Q 021667 163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAI--LDACPHLESLDLRQCFNVNLVGKLGKICA 240 (309)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l--~~~~~~L~~L~l~~c~~~~~~~~l~~~~~ 240 (309)
+.|+++++.+... ....+. .+++|++|+|++|.++.-....+ ...+++|+.|+|+++....-........+
T Consensus 115 ~~L~L~~N~i~~~------~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 187 (361)
T 2xot_A 115 EVLLLYNNHIVVV------DRNAFE-DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP 187 (361)
T ss_dssp CEEECCSSCCCEE------CTTTTT-TCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSC
T ss_pred CEEECCCCcccEE------CHHHhC-CcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhcc
Confidence 9999987655421 111223 78999999999997764211111 13588999999998775543333444444
Q ss_pred hc--cCceecCCCCC-Cchhhhh
Q 021667 241 ER--IRDLRHPNDST-HDYEFGA 260 (309)
Q Consensus 241 ~~--L~~L~l~~~~~-~d~~~~~ 260 (309)
. ++.|+|++|++ -|..+..
T Consensus 188 -~~~l~~l~l~~N~~~C~C~l~~ 209 (361)
T 2xot_A 188 -AWVKNGLYLHNNPLECDCKLYQ 209 (361)
T ss_dssp -HHHHTTEECCSSCEECCHHHHH
T ss_pred -HhhcceEEecCCCccCCcCcHH
Confidence 4 58899999996 4555443
No 111
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.59 E-value=1.3e-08 Score=93.63 Aligned_cols=133 Identities=13% Similarity=0.131 Sum_probs=62.1
Q ss_pred cCCCccEEEeCCCCCCCH-HHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHH
Q 021667 107 RSRNLRNLRLVSCYNISD-QGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKA 185 (309)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 185 (309)
.+++|+.|+++++ .++. ..+...+..+++|++|++++|.+...........+++|+.|+++++.+...
T Consensus 375 ~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---------- 443 (562)
T 3a79_B 375 TLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS---------- 443 (562)
T ss_dssp SCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGG----------
T ss_pred ccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcc----------
Confidence 3566666666644 3332 223333445566666666666443211111123345666666665433210
Q ss_pred HHhcC-CCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCC
Q 021667 186 IAENM-HGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDST 253 (309)
Q Consensus 186 l~~~~-~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~ 253 (309)
+...+ ++|+.|++++|.++. +..-+..+++|++|++++|...+-.......++ +|+.|++++|++
T Consensus 444 ~~~~l~~~L~~L~L~~N~l~~--ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~-~L~~L~l~~N~~ 509 (562)
T 3a79_B 444 VFRCLPPKVKVLDLHNNRIMS--IPKDVTHLQALQELNVASNQLKSVPDGVFDRLT-SLQYIWLHDNPW 509 (562)
T ss_dssp GGSSCCTTCSEEECCSSCCCC--CCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCT-TCCCEECCSCCB
T ss_pred hhhhhcCcCCEEECCCCcCcc--cChhhcCCCCCCEEECCCCCCCCCCHHHHhcCC-CCCEEEecCCCc
Confidence 11122 466666666665541 111111455666666666544332222233445 666666666664
No 112
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.57 E-value=3.8e-09 Score=98.59 Aligned_cols=60 Identities=10% Similarity=-0.026 Sum_probs=24.6
Q ss_pred CCCcEEEecCCccChHHHHH--HHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCC
Q 021667 191 HGLRHLQLFGNELTNVGLQA--ILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTH 254 (309)
Q Consensus 191 ~~L~~L~l~~~~i~~~~l~~--l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~ 254 (309)
++|++|++++|.++ .+.. .+..+++|++|++++|.....+. ....++ +|+.|++++|.++
T Consensus 305 ~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~-~L~~L~L~~N~l~ 366 (636)
T 4eco_A 305 EKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI-KLASLNLAYNQIT 366 (636)
T ss_dssp GTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE-EESEEECCSSEEE
T ss_pred CCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC-CCCEEECCCCccc
Confidence 44444444444443 1111 23344445555554444331222 112233 4555555555443
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.57 E-value=3.5e-09 Score=85.23 Aligned_cols=136 Identities=18% Similarity=0.184 Sum_probs=87.7
Q ss_pred CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667 84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL 162 (309)
Q Consensus 84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L 162 (309)
...++.|++.. .++... ......+++|+.|+|+++ .++... ...+..+++|++|+|++|.++.- ...+...+++|
T Consensus 31 ~~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N-~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L 106 (220)
T 2v9t_B 31 PETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNN-QISELA-PDAFQGLRSLNSLVLYGNKITEL-PKSLFEGLFSL 106 (220)
T ss_dssp CTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSS-CCCEEC-TTTTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred CcCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCC-cCCCcC-HHHhhCCcCCCEEECCCCcCCcc-CHhHccCCCCC
Confidence 35788888854 332211 112245789999999965 444211 12345689999999999966531 11223557899
Q ss_pred cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCc
Q 021667 163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNL 231 (309)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~ 231 (309)
+.|+++++.+... . ...+. .+++|++|+|++|.++..... .+..+++|+.|++++++..-+
T Consensus 107 ~~L~L~~N~l~~~--~----~~~~~-~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 107 QLLLLNANKINCL--R----VDAFQ-DLHNLNLLSLYDNKLQTIAKG-TFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CEEECCSSCCCCC--C----TTTTT-TCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCSSCEECS
T ss_pred CEEECCCCCCCEe--C----HHHcC-CCCCCCEEECCCCcCCEECHH-HHhCCCCCCEEEeCCCCcCCC
Confidence 9999998766532 1 11222 789999999999977643222 234688999999999875443
No 114
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.57 E-value=1.5e-08 Score=83.83 Aligned_cols=49 Identities=16% Similarity=0.403 Sum_probs=43.9
Q ss_pred CCCCCCCcHHHHHHHhccCChhhhhhhhhhhcHHHHHhccCCCCCceee
Q 021667 10 SCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNID 58 (309)
Q Consensus 10 ~~~~~~LP~eiL~~If~~L~~~d~~~~~~~Vcr~W~~~~~~~~l~~~i~ 58 (309)
...+..||+|+|..||++|+.++++.++++|||+|+.++.++.+|+..-
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~ 96 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKC 96 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHH
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHh
Confidence 3578899999999999999999993399999999999999999998654
No 115
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.55 E-value=3.2e-09 Score=90.93 Aligned_cols=178 Identities=16% Similarity=0.091 Sum_probs=85.3
Q ss_pred CCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCc
Q 021667 85 GQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLR 163 (309)
Q Consensus 85 ~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~ 163 (309)
+.++.|++.. .++... ......+++|++|++.++ .++... ...+..+++|++|++++|.+..-. ....++|+
T Consensus 54 ~~l~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n~l~~l~----~~~~~~L~ 126 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELR-KDDFKGLQHLYALVLVNN-KISKIH-EKAFSPLRKLQKLYISKNHLVEIP----PNLPSSLV 126 (332)
T ss_dssp TTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSS-CCCEEC-GGGSTTCTTCCEEECCSSCCCSCC----SSCCTTCC
T ss_pred CCCeEEECCCCcCCccC-HhHhhCCCCCcEEECCCC-ccCccC-HhHhhCcCCCCEEECCCCcCCccC----ccccccCC
Confidence 4566666643 222111 111234667777777654 333211 112345677777777776443110 01125666
Q ss_pred EEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHH-HHHHh--------------------CCCCCeee
Q 021667 164 SFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQ-AILDA--------------------CPHLESLD 222 (309)
Q Consensus 164 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~-~l~~~--------------------~~~L~~L~ 222 (309)
+|++.++.+... . ......+++|++|++++|.++..+.. ..+.. .++|++|+
T Consensus 127 ~L~l~~n~i~~~--~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~ 199 (332)
T 2ft3_A 127 ELRIHDNRIRKV--P-----KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELH 199 (332)
T ss_dssp EEECCSSCCCCC--C-----SGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCB
T ss_pred EEECCCCccCcc--C-----HhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEE
Confidence 666665444311 0 01112566666666666655421110 00111 13566666
Q ss_pred cCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667 223 LRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL 282 (309)
Q Consensus 223 l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~ 282 (309)
+++|............++ +|+.|++++|.+++.....+. ..+.++.++++++..
T Consensus 200 l~~n~i~~~~~~~l~~l~-~L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~L~~N~l 253 (332)
T 2ft3_A 200 LDHNKIQAIELEDLLRYS-KLYRLGLGHNQIRMIENGSLS-----FLPTLRELHLDNNKL 253 (332)
T ss_dssp CCSSCCCCCCTTSSTTCT-TCSCCBCCSSCCCCCCTTGGG-----GCTTCCEEECCSSCC
T ss_pred CCCCcCCccCHHHhcCCC-CCCEEECCCCcCCcCChhHhh-----CCCCCCEEECCCCcC
Confidence 665543332222233455 777777777777655443443 345666666665543
No 116
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.55 E-value=7.4e-08 Score=86.17 Aligned_cols=161 Identities=14% Similarity=0.022 Sum_probs=105.3
Q ss_pred CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667 84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL 162 (309)
Q Consensus 84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L 162 (309)
.+.++.|+++. .++.. . ...+++|++|+++++ .++.. . +..+++|++|++++|.++... ...+++|
T Consensus 84 l~~L~~L~Ls~N~l~~~--~--~~~l~~L~~L~L~~N-~l~~l--~--~~~l~~L~~L~l~~N~l~~l~----l~~l~~L 150 (457)
T 3bz5_A 84 NTNLTYLACDSNKLTNL--D--VTPLTKLTYLNCDTN-KLTKL--D--VSQNPLLTYLNCARNTLTEID----VSHNTQL 150 (457)
T ss_dssp CTTCSEEECCSSCCSCC--C--CTTCTTCCEEECCSS-CCSCC--C--CTTCTTCCEEECTTSCCSCCC----CTTCTTC
T ss_pred CCCCCEEECcCCCCcee--e--cCCCCcCCEEECCCC-cCCee--c--CCCCCcCCEEECCCCccceec----cccCCcC
Confidence 56788888854 33332 1 345888999998865 44432 1 456788999999888665421 3457889
Q ss_pred cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhc
Q 021667 163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAER 242 (309)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~ 242 (309)
+.|++.++..... . .+. .+++|++|++++|.++.-. +..+++|+.|++++|..... . ...++ +
T Consensus 151 ~~L~l~~n~~~~~----~----~~~-~l~~L~~L~ls~n~l~~l~----l~~l~~L~~L~l~~N~l~~~-~--l~~l~-~ 213 (457)
T 3bz5_A 151 TELDCHLNKKITK----L----DVT-PQTQLTTLDCSFNKITELD----VSQNKLLNRLNCDTNNITKL-D--LNQNI-Q 213 (457)
T ss_dssp CEEECTTCSCCCC----C----CCT-TCTTCCEEECCSSCCCCCC----CTTCTTCCEEECCSSCCSCC-C--CTTCT-T
T ss_pred CEEECCCCCcccc----c----ccc-cCCcCCEEECCCCccceec----cccCCCCCEEECcCCcCCee-c--cccCC-C
Confidence 9998887532211 0 122 6788999999988776532 44678899999988765442 1 34456 8
Q ss_pred cCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667 243 IRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL 282 (309)
Q Consensus 243 L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~ 282 (309)
|+.|++++|.+++.. +. ..+.++.++++++..
T Consensus 214 L~~L~Ls~N~l~~ip---~~-----~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 214 LTFLDCSSNKLTEID---VT-----PLTQLTYFDCSVNPL 245 (457)
T ss_dssp CSEEECCSSCCSCCC---CT-----TCTTCSEEECCSSCC
T ss_pred CCEEECcCCcccccC---cc-----ccCCCCEEEeeCCcC
Confidence 899999998887643 22 345666666665543
No 117
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.53 E-value=1.2e-08 Score=97.94 Aligned_cols=60 Identities=15% Similarity=0.032 Sum_probs=30.1
Q ss_pred CCCCcEEEecCCccChHHHHH--HHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCC
Q 021667 190 MHGLRHLQLFGNELTNVGLQA--ILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTH 254 (309)
Q Consensus 190 ~~~L~~L~l~~~~i~~~~l~~--l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~ 254 (309)
+++|++|++++|.++ .+.. .+..+++|+.|++++|... .+. ....++ +|+.|++++|.++
T Consensus 547 l~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~-~L~~L~Ls~N~l~ 608 (876)
T 4ecn_A 547 GPKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV-KLTDLKLDYNQIE 608 (876)
T ss_dssp TTTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS-EESEEECCSSCCS
T ss_pred cCCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCC-cceEEECcCCccc
Confidence 445666666665544 1222 3335556666666655433 222 223344 6666666666654
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.51 E-value=1.9e-08 Score=81.37 Aligned_cols=136 Identities=14% Similarity=0.000 Sum_probs=93.4
Q ss_pred CCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHH
Q 021667 134 FPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILD 213 (309)
Q Consensus 134 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~ 213 (309)
.++|+.|+|++|.+..... .....+++|+.|+++++.+... . ......+++|++|+|++|.++.-. ...+.
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~i--~-----~~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~ 109 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEP-GVFDSLINLKELYLGSNQLGAL--P-----VGVFDSLTQLTVLDLGTNQLTVLP-SAVFD 109 (229)
T ss_dssp CTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCC--C-----TTTTTTCTTCCEEECCSSCCCCCC-TTTTT
T ss_pred CCCCCEEEcCCCccCccCH-HHhhCccCCcEEECCCCCCCCc--C-----hhhcccCCCcCEEECCCCcCCccC-hhHhC
Confidence 3899999999997654211 2234589999999998766422 1 112237899999999999776321 12344
Q ss_pred hCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccCCC
Q 021667 214 ACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSD 285 (309)
Q Consensus 214 ~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~d 285 (309)
.+++|++|+++++.... +..-...++ +|+.|++++|.++......+. ..+.+..+++++..+.-+
T Consensus 110 ~l~~L~~L~Ls~N~l~~-lp~~~~~l~-~L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 110 RLVHLKELFMCCNKLTE-LPRGIERLT-HLTHLALDQNQLKSIPHGAFD-----RLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp TCTTCCEEECCSSCCCS-CCTTGGGCT-TCSEEECCSSCCCCCCTTTTT-----TCTTCCEEECTTSCBCTT
T ss_pred cchhhCeEeccCCcccc-cCcccccCC-CCCEEECCCCcCCccCHHHHh-----CCCCCCEEEeeCCCccCC
Confidence 68999999999887554 333335667 999999999998765544443 455677777776655433
No 119
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.51 E-value=3.2e-09 Score=84.01 Aligned_cols=107 Identities=22% Similarity=0.249 Sum_probs=61.8
Q ss_pred cCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHH
Q 021667 107 RSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAI 186 (309)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l 186 (309)
.+++|+.|+++++ .++. +. .+..+++|+.|++++|.+.. +......+++|+.|+++++.+.. +..+
T Consensus 46 ~l~~L~~L~ls~n-~l~~--l~-~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l~~--------l~~~ 111 (198)
T 1ds9_A 46 TLKACKHLALSTN-NIEK--IS-SLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIAS--------LSGI 111 (198)
T ss_dssp HTTTCSEEECSEE-EESC--CC-CHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEECCC--------HHHH
T ss_pred cCCCCCEEECCCC-CCcc--cc-ccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcCCc--------CCcc
Confidence 4677777777754 3332 11 23456777777777774432 22223335677777777654431 1233
Q ss_pred HhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCC
Q 021667 187 AENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFN 228 (309)
Q Consensus 187 ~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~ 228 (309)
. .+++|++|++++|.++.-.....+..+++|++|++++|..
T Consensus 112 ~-~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 112 E-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp H-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred c-cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 3 5677777777777766533323344677777777777653
No 120
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.51 E-value=1.8e-09 Score=88.09 Aligned_cols=179 Identities=9% Similarity=0.012 Sum_probs=108.6
Q ss_pred CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecC-CCCCHHHHHHHHhcCCC
Q 021667 84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSY-CSLSQEALEAVGSLCPL 161 (309)
Q Consensus 84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~-~~~~~~~~~~l~~~~~~ 161 (309)
...++.+++.. .++.-. ......+++|++|++.++..++... ...+..+++|++|++++ +.+..-.. .....+++
T Consensus 30 ~~~l~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~-~~f~~l~~ 106 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIP-SHAFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDP-DALKELPL 106 (239)
T ss_dssp CTTCCEEEEESCCCSEEC-TTTTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECT-TSEECCTT
T ss_pred CCcccEEEEeCCcceEEC-HHHccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCH-HHhCCCCC
Confidence 34677777743 232211 1122358899999998763244211 11245688999999997 66653211 12245789
Q ss_pred CcEEEeccCCCCCCCcccchhHHHHHhcCCCCc---EEEecCC-ccChHHHHHHHHhCCCCC-eeecCCCCCcCchhHHH
Q 021667 162 LRSFKLNNRGHRCPKIECDDDAKAIAENMHGLR---HLQLFGN-ELTNVGLQAILDACPHLE-SLDLRQCFNVNLVGKLG 236 (309)
Q Consensus 162 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~---~L~l~~~-~i~~~~l~~l~~~~~~L~-~L~l~~c~~~~~~~~l~ 236 (309)
|+.|++.++.+..- . .+ ..+++|+ +|++++| .++.-... .+..+++|+ .|+++++....-.....
T Consensus 107 L~~L~l~~n~l~~l--p------~~-~~l~~L~~L~~L~l~~N~~l~~i~~~-~~~~l~~L~~~L~l~~n~l~~i~~~~~ 176 (239)
T 2xwt_C 107 LKFLGIFNTGLKMF--P------DL-TKVYSTDIFFILEITDNPYMTSIPVN-AFQGLCNETLTLKLYNNGFTSVQGYAF 176 (239)
T ss_dssp CCEEEEEEECCCSC--C------CC-TTCCBCCSEEEEEEESCTTCCEECTT-TTTTTBSSEEEEECCSCCCCEECTTTT
T ss_pred CCEEeCCCCCCccc--c------cc-ccccccccccEEECCCCcchhhcCcc-cccchhcceeEEEcCCCCCcccCHhhc
Confidence 99999987655421 1 12 2667777 9999988 76642211 233678899 99998876543222222
Q ss_pred HHhHhccCceecCCCC-CCchhhhhhhhhhccCC-cCCCCCCCCcccc
Q 021667 237 KICAERIRDLRHPNDS-THDYEFGADFQDFCWSS-VEDYPSGISDIEL 282 (309)
Q Consensus 237 ~~~~~~L~~L~l~~~~-~~d~~~~~~~~~~c~~~-~~l~~~~~s~~~~ 282 (309)
.. + +|++|++++|. ++......+. .. +.++.+++++...
T Consensus 177 ~~-~-~L~~L~L~~n~~l~~i~~~~~~-----~l~~~L~~L~l~~N~l 217 (239)
T 2xwt_C 177 NG-T-KLDAVYLNKNKYLTVIDKDAFG-----GVYSGPSLLDVSQTSV 217 (239)
T ss_dssp TT-C-EEEEEECTTCTTCCEECTTTTT-----TCSBCCSEEECTTCCC
T ss_pred CC-C-CCCEEEcCCCCCcccCCHHHhh-----ccccCCcEEECCCCcc
Confidence 22 5 89999999995 8765555554 44 5677777776544
No 121
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.49 E-value=1.9e-08 Score=96.46 Aligned_cols=159 Identities=13% Similarity=0.134 Sum_probs=104.3
Q ss_pred cCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCC-CCH-HHHH---HHH---hcCCCCcEEEeccCCCCCCCcc
Q 021667 107 RSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCS-LSQ-EALE---AVG---SLCPLLRSFKLNNRGHRCPKIE 178 (309)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~-~~~~---~l~---~~~~~L~~L~l~~~~~~~~~~~ 178 (309)
.+++|+.|+|.++..... ++..+..+++|++|+|++|. ++. .... .+. ..+|+|+.|+++++.+. .++
T Consensus 489 ~L~~L~~L~Ls~N~l~~~--iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip 564 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQ--LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EFP 564 (876)
T ss_dssp GCTTCCEEEEESCTTCCS--CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCC
T ss_pred cCCCCCEEECcCCCCCcc--ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--ccC
Confidence 578899999987632221 22345678999999999996 775 3222 222 34579999999986654 111
Q ss_pred cchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhc-cCceecCCCCCCchh
Q 021667 179 CDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAER-IRDLRHPNDSTHDYE 257 (309)
Q Consensus 179 ~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~-L~~L~l~~~~~~d~~ 257 (309)
....+. .+++|+.|++++|.++ .+. .+..+++|+.|++++|... .+......++ + |+.|++++|.++...
T Consensus 565 ---~~~~l~-~L~~L~~L~Ls~N~l~--~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~-~~L~~L~Ls~N~L~~lp 635 (876)
T 4ecn_A 565 ---ASASLQ-KMVKLGLLDCVHNKVR--HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFT-DQVEGLGFSHNKLKYIP 635 (876)
T ss_dssp ---CHHHHT-TCTTCCEEECTTSCCC--BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEEC-TTCCEEECCSSCCCSCC
T ss_pred ---Chhhhh-cCCCCCEEECCCCCcc--cch-hhcCCCcceEEECcCCccc-cchHHHhhcc-ccCCEEECcCCCCCcCc
Confidence 112344 8999999999999877 232 3456889999999998765 3333344556 6 999999999987332
Q ss_pred hhhhhhhhccCCcCCCCCCCCcccc
Q 021667 258 FGADFQDFCWSSVEDYPSGISDIEL 282 (309)
Q Consensus 258 ~~~~~~~~c~~~~~l~~~~~s~~~~ 282 (309)
..+. .. ..+.+..++++++..
T Consensus 636 -~~~~-~~--~~~~L~~L~Ls~N~l 656 (876)
T 4ecn_A 636 -NIFN-AK--SVYVMGSVDFSYNKI 656 (876)
T ss_dssp -SCCC-TT--CSSCEEEEECCSSCT
T ss_pred -hhhh-cc--ccCCCCEEECcCCcC
Confidence 1111 11 223477777877755
No 122
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.47 E-value=1.1e-08 Score=95.52 Aligned_cols=154 Identities=14% Similarity=0.044 Sum_probs=78.9
Q ss_pred CCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHh-------cCCCCcEEEeccCCCCCCCcccc
Q 021667 108 SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGS-------LCPLLRSFKLNNRGHRCPKIECD 180 (309)
Q Consensus 108 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~-------~~~~L~~L~l~~~~~~~~~~~~~ 180 (309)
+++|+.|+++++ .++. ....+...+++|++|+|++|.++.- -..+.. .+++|+.|+++++.+.. +.
T Consensus 432 ~~~L~~L~Ls~N-~l~~-lp~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--lp-- 504 (636)
T 4eco_A 432 GINVSSINLSNN-QISK-FPKELFSTGSPLSSINLMGNMLTEI-PKNSLKDENENFKNTYLLTSIDLRFNKLTK--LS-- 504 (636)
T ss_dssp CCCEEEEECCSS-CCCS-CCTHHHHTTCCCSEEECCSSCCSBC-CSSSSEETTEECTTGGGCCEEECCSSCCCB--CC--
T ss_pred CCCCCEEECcCC-ccCc-CCHHHHccCCCCCEEECCCCCCCCc-CHHHhccccccccccCCccEEECcCCcCCc--cC--
Confidence 457777777755 3431 1123444577777777777755411 000111 12267777777654431 11
Q ss_pred hhHHHHH-hcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCC------CcCchhHHHHHhHhccCceecCCCCC
Q 021667 181 DDAKAIA-ENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCF------NVNLVGKLGKICAERIRDLRHPNDST 253 (309)
Q Consensus 181 ~~~~~l~-~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~------~~~~~~~l~~~~~~~L~~L~l~~~~~ 253 (309)
..+. ..+++|++|++++|.++. +..-+..+++|+.|++++|. ...........++ +|++|++++|.+
T Consensus 505 ---~~~~~~~l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l 578 (636)
T 4eco_A 505 ---DDFRATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP-SLTQLQIGSNDI 578 (636)
T ss_dssp ---GGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCS-SCCEEECCSSCC
T ss_pred ---hhhhhccCCCcCEEECCCCCCCC--cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCC-CCCEEECCCCcC
Confidence 1111 256777777777776654 22223356777777774432 2222222333455 677777777766
Q ss_pred CchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667 254 HDYEFGADFQDFCWSSVEDYPSGISDIEL 282 (309)
Q Consensus 254 ~d~~~~~~~~~~c~~~~~l~~~~~s~~~~ 282 (309)
+..... . .+.++.+|++++..
T Consensus 579 ~~ip~~-----~---~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 579 RKVNEK-----I---TPNISVLDIKDNPN 599 (636)
T ss_dssp CBCCSC-----C---CTTCCEEECCSCTT
T ss_pred CccCHh-----H---hCcCCEEECcCCCC
Confidence 332111 1 13556666666544
No 123
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.47 E-value=7.7e-09 Score=99.63 Aligned_cols=38 Identities=18% Similarity=0.166 Sum_probs=16.1
Q ss_pred cCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccC
Q 021667 133 GFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNR 170 (309)
Q Consensus 133 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 170 (309)
.+++|++|+|++|.+...........+++|+.|+++++
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 34555555555553332111111233455555555543
No 124
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.46 E-value=3.3e-09 Score=90.90 Aligned_cols=163 Identities=14% Similarity=0.069 Sum_probs=81.8
Q ss_pred CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHH-HHHhcC--
Q 021667 84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALE-AVGSLC-- 159 (309)
Q Consensus 84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~l~~~~-- 159 (309)
.+.++.|+++. .++. +. ....++|++|++.++ .++.. ....+..+++|++|++++|.+...+.. .....+
T Consensus 101 l~~L~~L~L~~n~l~~--l~--~~~~~~L~~L~l~~n-~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L 174 (332)
T 2ft3_A 101 LRKLQKLYISKNHLVE--IP--PNLPSSLVELRIHDN-RIRKV-PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKL 174 (332)
T ss_dssp CTTCCEEECCSSCCCS--CC--SSCCTTCCEEECCSS-CCCCC-CSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCC
T ss_pred cCCCCEEECCCCcCCc--cC--ccccccCCEEECCCC-ccCcc-CHhHhCCCccCCEEECCCCccccCCCCcccccCCcc
Confidence 46778888753 2221 00 011267888888754 33311 111244577788888877755431111 001111
Q ss_pred ------------------CCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCee
Q 021667 160 ------------------PLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESL 221 (309)
Q Consensus 160 ------------------~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L 221 (309)
++|+.|+++++.+... ....+. .+++|++|++++|.++..... .+..+++|++|
T Consensus 175 ~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~------~~~~l~-~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L 246 (332)
T 2ft3_A 175 NYLRISEAKLTGIPKDLPETLNELHLDHNKIQAI------ELEDLL-RYSKLYRLGLGHNQIRMIENG-SLSFLPTLREL 246 (332)
T ss_dssp SCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCC------CTTSST-TCTTCSCCBCCSSCCCCCCTT-GGGGCTTCCEE
T ss_pred CEEECcCCCCCccCccccCCCCEEECCCCcCCcc------CHHHhc-CCCCCCEEECCCCcCCcCChh-HhhCCCCCCEE
Confidence 3444444444332211 001122 566777777777755532211 12356777777
Q ss_pred ecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhh
Q 021667 222 DLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADF 262 (309)
Q Consensus 222 ~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~ 262 (309)
++++|... ........++ +|+.|++++|.+++.+...+.
T Consensus 247 ~L~~N~l~-~lp~~l~~l~-~L~~L~l~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 247 HLDNNKLS-RVPAGLPDLK-LLQVVYLHTNNITKVGVNDFC 285 (332)
T ss_dssp ECCSSCCC-BCCTTGGGCT-TCCEEECCSSCCCBCCTTSSS
T ss_pred ECCCCcCe-ecChhhhcCc-cCCEEECCCCCCCccChhHcc
Confidence 77766543 2222234455 777777777777666555554
No 125
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.42 E-value=2.5e-08 Score=86.45 Aligned_cols=144 Identities=17% Similarity=0.089 Sum_probs=96.3
Q ss_pred CCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHH
Q 021667 108 SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIA 187 (309)
Q Consensus 108 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 187 (309)
.+.++.|+|+++ .++......+...+++|++|+|++|.+...... ....+++|+.|+++++.+... .....
T Consensus 38 ~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~-~~~~l~~L~~L~Ls~N~l~~~-------~~~~~ 108 (361)
T 2xot_A 38 PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE-AFVPVPNLRYLDLSSNHLHTL-------DEFLF 108 (361)
T ss_dssp CTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEE-------CTTTT
T ss_pred CCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChh-hccCCCCCCEEECCCCcCCcC-------CHHHh
Confidence 356899999965 555322221222689999999999977542211 234589999999998665421 11112
Q ss_pred hcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHH---HHhHhccCceecCCCCCCchhhhhhh
Q 021667 188 ENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLG---KICAERIRDLRHPNDSTHDYEFGADF 262 (309)
Q Consensus 188 ~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~---~~~~~~L~~L~l~~~~~~d~~~~~~~ 262 (309)
..+++|+.|+|++|.++..... .+..+++|+.|+|++|....-...+. ..++ +|+.|+|++|.++......+.
T Consensus 109 ~~l~~L~~L~L~~N~i~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~-~L~~L~L~~N~l~~l~~~~~~ 184 (361)
T 2xot_A 109 SDLQALEVLLLYNNHIVVVDRN-AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP-KLMLLDLSSNKLKKLPLTDLQ 184 (361)
T ss_dssp TTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCSCCGGGTC----CT-TCCEEECCSSCCCCCCHHHHH
T ss_pred CCCcCCCEEECCCCcccEECHH-HhCCcccCCEEECCCCcCCeeCHHHhcCcccCC-cCCEEECCCCCCCccCHHHhh
Confidence 3789999999999987743222 23468999999999987655333332 4567 999999999999876655543
No 126
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.36 E-value=4.9e-08 Score=90.70 Aligned_cols=138 Identities=14% Similarity=0.140 Sum_probs=94.3
Q ss_pred CCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHh
Q 021667 109 RNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAE 188 (309)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 188 (309)
+++++|+|++. .++.-. ...+..+++|++|+|++|.+..-.- .....+++|++|+++++.+..- . .....
T Consensus 52 ~~~~~LdLs~N-~i~~l~-~~~f~~l~~L~~L~Ls~N~i~~i~~-~~f~~L~~L~~L~Ls~N~l~~l----~---~~~f~ 121 (635)
T 4g8a_A 52 FSTKNLDLSFN-PLRHLG-SYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQSL----A---LGAFS 121 (635)
T ss_dssp TTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCEE----C---GGGGT
T ss_pred cCCCEEEeeCC-CCCCCC-HHHHhCCCCCCEEECCCCcCCCcCh-hHhcCCCCCCEEEccCCcCCCC----C---HHHhc
Confidence 47999999965 555311 1234578999999999997653211 1235589999999998655421 1 11223
Q ss_pred cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCc-hhHHHHHhHhccCceecCCCCCCchhh
Q 021667 189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNL-VGKLGKICAERIRDLRHPNDSTHDYEF 258 (309)
Q Consensus 189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~-~~~l~~~~~~~L~~L~l~~~~~~d~~~ 258 (309)
.+++|++|++++|.++.-.-. .+..+++|++|++++|..... .......++ +|++|++++|.++....
T Consensus 122 ~L~~L~~L~Ls~N~l~~l~~~-~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp TCTTCCEEECTTSCCCCSTTC-CCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-TCCEEECCSSCCCEECG
T ss_pred CCCCCCEEECCCCcCCCCChh-hhhcCcccCeeccccCccccCCCchhhccch-hhhhhcccCcccccccc
Confidence 889999999999977642111 134689999999999875432 334555677 99999999999865433
No 127
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.34 E-value=4.1e-08 Score=91.20 Aligned_cols=159 Identities=16% Similarity=0.088 Sum_probs=98.4
Q ss_pred CCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCc
Q 021667 85 GQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLR 163 (309)
Q Consensus 85 ~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~ 163 (309)
..++.|++++ .++.- -......+++|++|+|+++ .++.-. ...+..+++|++|+|++|.+..-.. ....++++|+
T Consensus 52 ~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N-~i~~i~-~~~f~~L~~L~~L~Ls~N~l~~l~~-~~f~~L~~L~ 127 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRC-EIQTIE-DGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQ 127 (635)
T ss_dssp TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTC-CCCEEC-TTTTTTCTTCCEEECTTCCCCEECG-GGGTTCTTCC
T ss_pred cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCC-cCCCcC-hhHhcCCCCCCEEEccCCcCCCCCH-HHhcCCCCCC
Confidence 4788888864 33321 1122345899999999976 444211 1234578999999999997653211 2235689999
Q ss_pred EEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhH---
Q 021667 164 SFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICA--- 240 (309)
Q Consensus 164 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~--- 240 (309)
+|++.++.+... . . ..+ ..+++|++|++++|.++...+...+..+++|++|+++++..............
T Consensus 128 ~L~Ls~N~l~~l--~--~--~~~-~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~ 200 (635)
T 4g8a_A 128 KLVAVETNLASL--E--N--FPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 200 (635)
T ss_dssp EEECTTSCCCCS--T--T--CCC-TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred EEECCCCcCCCC--C--h--hhh-hcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhh
Confidence 999998665422 1 0 112 27899999999999776544444555789999999998865443222222222
Q ss_pred hccCceecCCCCCC
Q 021667 241 ERIRDLRHPNDSTH 254 (309)
Q Consensus 241 ~~L~~L~l~~~~~~ 254 (309)
.....++++.+.++
T Consensus 201 ~~~~~~~ls~n~l~ 214 (635)
T 4g8a_A 201 LLNLSLDLSLNPMN 214 (635)
T ss_dssp TCCCEEECTTCCCC
T ss_pred hhhhhhhcccCccc
Confidence 12335666666553
No 128
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.34 E-value=6.4e-09 Score=84.75 Aligned_cols=153 Identities=12% Similarity=0.070 Sum_probs=102.3
Q ss_pred CCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCC-CCHHHHHHHHhcCCCCcEEEecc-CCCCCCCcccchhHHHH
Q 021667 109 RNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCS-LSQEALEAVGSLCPLLRSFKLNN-RGHRCPKIECDDDAKAI 186 (309)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~l 186 (309)
++|+.|++.++ .++...- ..+..+++|++|++++|. ++.-.. .....+++|++|++++ +.+... . ...+
T Consensus 31 ~~l~~L~l~~n-~l~~i~~-~~~~~l~~L~~L~l~~n~~l~~i~~-~~f~~l~~L~~L~l~~~n~l~~i--~----~~~f 101 (239)
T 2xwt_C 31 PSTQTLKLIET-HLRTIPS-HAFSNLPNISRIYVSIDVTLQQLES-HSFYNLSKVTHIEIRNTRNLTYI--D----PDAL 101 (239)
T ss_dssp TTCCEEEEESC-CCSEECT-TTTTTCTTCCEEEEECCSSCCEECT-TTEESCTTCCEEEEEEETTCCEE--C----TTSE
T ss_pred CcccEEEEeCC-cceEECH-HHccCCCCCcEEeCCCCCCcceeCH-hHcCCCcCCcEEECCCCCCeeEc--C----HHHh
Confidence 48999999965 4442211 134568999999999995 653211 1235689999999986 554311 0 1112
Q ss_pred HhcCCCCcEEEecCCccChHHHHHHHHhCCCCC---eeecCCCCCcCchh-HHHHHhHhccC-ceecCCCCCCchhhhhh
Q 021667 187 AENMHGLRHLQLFGNELTNVGLQAILDACPHLE---SLDLRQCFNVNLVG-KLGKICAERIR-DLRHPNDSTHDYEFGAD 261 (309)
Q Consensus 187 ~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~---~L~l~~c~~~~~~~-~l~~~~~~~L~-~L~l~~~~~~d~~~~~~ 261 (309)
..+++|++|++++|.++. +.. +..+++|+ +|+++++..++... .....++ +|+ .|++++|.++......+
T Consensus 102 -~~l~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~-~L~~~L~l~~n~l~~i~~~~~ 176 (239)
T 2xwt_C 102 -KELPLLKFLGIFNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC-NETLTLKLYNNGFTSVQGYAF 176 (239)
T ss_dssp -ECCTTCCEEEEEEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB-SSEEEEECCSCCCCEECTTTT
T ss_pred -CCCCCCCEEeCCCCCCcc--ccc-cccccccccccEEECCCCcchhhcCcccccchh-cceeEEEcCCCCCcccCHhhc
Confidence 278999999999997764 222 44678888 99999984555432 3345677 999 99999999875554444
Q ss_pred hhhhccCCcCCCCCCCCccc
Q 021667 262 FQDFCWSSVEDYPSGISDIE 281 (309)
Q Consensus 262 ~~~~c~~~~~l~~~~~s~~~ 281 (309)
. . ..+..++++++.
T Consensus 177 ~-----~-~~L~~L~L~~n~ 190 (239)
T 2xwt_C 177 N-----G-TKLDAVYLNKNK 190 (239)
T ss_dssp T-----T-CEEEEEECTTCT
T ss_pred C-----C-CCCCEEEcCCCC
Confidence 3 2 466677777664
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.31 E-value=3.5e-08 Score=77.53 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=25.2
Q ss_pred cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCC
Q 021667 189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDST 253 (309)
Q Consensus 189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~ 253 (309)
.+++|++|+|++|.++..... .+..+++|++|+++++...+.........+ +|+.|++++|++
T Consensus 76 ~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l 138 (192)
T 1w8a_A 76 GASHIQELQLGENKIKEISNK-MFLGLHQLKTLNLYDNQISCVMPGSFEHLN-SLTSLNLASNPF 138 (192)
T ss_dssp TCTTCCEEECCSCCCCEECSS-SSTTCTTCCEEECCSSCCCEECTTSSTTCT-TCCEEECTTCCB
T ss_pred CcccCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCCeeCHHHhhcCC-CCCEEEeCCCCc
Confidence 344455555555443321111 112344455555554433222122222334 455555555553
No 130
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.30 E-value=6.7e-08 Score=86.21 Aligned_cols=51 Identities=18% Similarity=0.432 Sum_probs=45.8
Q ss_pred CCCCCCCcHHHHHHHhccCChhhhhhhhhhhcHHHHHhccC-CCCCceeecCC
Q 021667 10 SCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHD-PAMWRNIDMHN 61 (309)
Q Consensus 10 ~~~~~~LP~eiL~~If~~L~~~d~~~~~~~Vcr~W~~~~~~-~~l~~~i~l~~ 61 (309)
.+.+..||+|++.+||+||+.++++ ++++|||+|++++.+ +.+|+++-+..
T Consensus 12 ~d~~~~lp~~~~~~i~~~l~~~~l~-~~~~v~~~w~~~~~~~~~~w~~~~~~~ 63 (464)
T 3v7d_B 12 RDLITSLPFEISLKIFNYLQFEDII-NSLGVSQNWNKIIRKSTSLWKKLLISE 63 (464)
T ss_dssp CCHHHHSCHHHHHHHHTTSCHHHHH-HHHTTCHHHHHHHTTCHHHHHHHHHHT
T ss_pred cCChHHCCHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHhcc
Confidence 4678899999999999999999996 999999999999997 89999876543
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.28 E-value=9.9e-08 Score=73.84 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=59.9
Q ss_pred CCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHh
Q 021667 135 PLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDA 214 (309)
Q Consensus 135 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~ 214 (309)
++|++|+++++.+.... ......+++|+.|+++++.+... . ......+++|++|++++|.++... ...+..
T Consensus 28 ~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~--~-----~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~ 98 (177)
T 2o6r_A 28 SSATRLELESNKLQSLP-HGVFDKLTQLTKLSLSQNQIQSL--P-----DGVFDKLTKLTILYLHENKLQSLP-NGVFDK 98 (177)
T ss_dssp TTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCCCC--C-----TTTTTTCTTCCEEECCSSCCCCCC-TTTTTT
T ss_pred CCCcEEEeCCCcccEeC-HHHhcCcccccEEECCCCcceEe--C-----hhHccCCCccCEEECCCCCccccC-HHHhhC
Confidence 56677777766543211 11123456777777766544321 1 011125677777777777655221 112335
Q ss_pred CCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCC
Q 021667 215 CPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTH 254 (309)
Q Consensus 215 ~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~ 254 (309)
+++|++|+++++....-.......++ +|++|++++|+++
T Consensus 99 l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 99 LTQLKELALDTNQLKSVPDGIFDRLT-SLQKIWLHTNPWD 137 (177)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCSSCBC
T ss_pred CcccCEEECcCCcceEeCHHHhcCCc-ccCEEEecCCCee
Confidence 67777777777654433333334456 7777888877754
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.27 E-value=2.4e-07 Score=72.79 Aligned_cols=115 Identities=17% Similarity=0.029 Sum_probs=61.1
Q ss_pred CCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHh
Q 021667 135 PLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDA 214 (309)
Q Consensus 135 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~ 214 (309)
++|++|+|+++.++.- ......+++|+.|+++++.+... . ...+. .+++|++|+|++|.++.-... .+..
T Consensus 31 ~~l~~L~L~~n~i~~i--p~~~~~l~~L~~L~Ls~N~i~~i--~----~~~f~-~l~~L~~L~Ls~N~l~~i~~~-~f~~ 100 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLV--PKELSNYKHLTLIDLSNNRISTL--S----NQSFS-NMTQLLTLILSYNRLRCIPPR-TFDG 100 (193)
T ss_dssp TTCCEEECCSSCCCSC--CGGGGGCTTCCEEECCSSCCCCC--C----TTTTT-TCTTCCEEECCSSCCCBCCTT-TTTT
T ss_pred CCCCEEECCCCcCchh--HHHhhcccCCCEEECCCCcCCEe--C----HhHcc-CCCCCCEEECCCCccCEeCHH-HhCC
Confidence 4666666666644421 11234466677777665544321 0 01122 566777777777755532211 1235
Q ss_pred CCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCC-Cchhhhh
Q 021667 215 CPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDST-HDYEFGA 260 (309)
Q Consensus 215 ~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~-~d~~~~~ 260 (309)
+++|+.|+|+++....-.......++ +|+.|++++|++ -|..+..
T Consensus 101 l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~~~C~c~l~~ 146 (193)
T 2wfh_A 101 LKSLRLLSLHGNDISVVPEGAFNDLS-ALSHLAIGANPLYCDCNMQW 146 (193)
T ss_dssp CTTCCEEECCSSCCCBCCTTTTTTCT-TCCEEECCSSCEECSGGGHH
T ss_pred CCCCCEEECCCCCCCeeChhhhhcCc-cccEEEeCCCCeecCCcCHH
Confidence 66777777777654433323334456 777777777774 3444433
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.25 E-value=4.4e-07 Score=83.28 Aligned_cols=107 Identities=21% Similarity=0.146 Sum_probs=75.9
Q ss_pred CCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHh
Q 021667 135 PLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDA 214 (309)
Q Consensus 135 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~ 214 (309)
..|+.|+|++|.++. +.. ...+++|+.|+++++.+.. ++ ..+. .+++|+.|+|++|.++. +. -+..
T Consensus 441 ~~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~~--lp-----~~~~-~l~~L~~L~Ls~N~l~~--lp-~l~~ 506 (567)
T 1dce_A 441 ADVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLRA--LP-----PALA-ALRCLEVLQASDNALEN--VD-GVAN 506 (567)
T ss_dssp TTCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCCC--CC-----GGGG-GCTTCCEEECCSSCCCC--CG-GGTT
T ss_pred cCceEEEecCCCCCC--CcC-ccccccCcEeecCcccccc--cc-----hhhh-cCCCCCEEECCCCCCCC--Cc-ccCC
Confidence 468999999996654 223 4557899999998876651 11 1233 78999999999997775 22 3456
Q ss_pred CCCCCeeecCCCCCcCch-hHHHHHhHhccCceecCCCCCCch
Q 021667 215 CPHLESLDLRQCFNVNLV-GKLGKICAERIRDLRHPNDSTHDY 256 (309)
Q Consensus 215 ~~~L~~L~l~~c~~~~~~-~~l~~~~~~~L~~L~l~~~~~~d~ 256 (309)
+++|+.|+|++|...+.. ......++ +|+.|+|++|+++..
T Consensus 507 l~~L~~L~Ls~N~l~~~~~p~~l~~l~-~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 507 LPRLQELLLCNNRLQQSAAIQPLVSCP-RLVLLNLQGNSLCQE 548 (567)
T ss_dssp CSSCCEEECCSSCCCSSSTTGGGGGCT-TCCEEECTTSGGGGS
T ss_pred CCCCcEEECCCCCCCCCCCcHHHhcCC-CCCEEEecCCcCCCC
Confidence 889999999987655432 34445677 899999999987543
No 134
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.22 E-value=3.9e-07 Score=80.87 Aligned_cols=49 Identities=24% Similarity=0.459 Sum_probs=44.7
Q ss_pred CCCCCCCCcHHHHHHHhccCChhhhhhhhhhhcHHHHHhccCCCCCceee
Q 021667 9 ESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNID 58 (309)
Q Consensus 9 ~~~~~~~LP~eiL~~If~~L~~~d~~~~~~~Vcr~W~~~~~~~~l~~~i~ 58 (309)
..+.++.||+|++.+||+||+.+++. ++++|||+|+.++.++.+|+.+-
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~~~~l~-~~~~v~~~~~~~~~~~~~w~~~~ 63 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLEPKDLL-QAAQTCRYWRILAEDNLLWREKC 63 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSCHHHHH-HHTTSCHHHHHHHTCSHHHHHHH
T ss_pred cCChhHHCCHHHHHHHHHhCCHHHHH-HHHHHhHHHHhhcCchhHhhhhe
Confidence 45789999999999999999999995 99999999999999888898654
No 135
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.20 E-value=1.3e-07 Score=83.88 Aligned_cols=48 Identities=31% Similarity=0.623 Sum_probs=43.9
Q ss_pred CCCCCCCCcHH----HHHHHhccCChhhhhhhhhhhcHHHHHhccCCCCCcee
Q 021667 9 ESCDWTQLPAD----VTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNI 57 (309)
Q Consensus 9 ~~~~~~~LP~e----iL~~If~~L~~~d~~~~~~~Vcr~W~~~~~~~~l~~~i 57 (309)
..+.++.||+| ++.+||+||+.+++. ++++|||+|+.++.++.+|+.+
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~-~~~~v~~~w~~~~~~~~~w~~~ 58 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLDAKSLC-AAELVCKEWYRVTSDGMLWKKL 58 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCHHHHH-HHHHHCHHHHHHHHHTTHHHHH
T ss_pred hcChHHHCCcchHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHhcChHHHHHH
Confidence 35778899999 999999999999996 9999999999999988999865
No 136
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.11 E-value=4.7e-06 Score=77.17 Aligned_cols=40 Identities=8% Similarity=-0.102 Sum_probs=17.1
Q ss_pred CCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCch
Q 021667 215 CPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDY 256 (309)
Q Consensus 215 ~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~ 256 (309)
+++|+.|++++|.... +......++ +|+.|+|++|+++..
T Consensus 260 ~~~L~~L~Ls~N~L~~-lp~~l~~l~-~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 260 PSGLLSLSVYRNQLTR-LPESLIHLS-SETTVNLEGNPLSER 299 (622)
T ss_dssp CTTCCEEECCSSCCCS-CCGGGGGSC-TTCEEECCSCCCCHH
T ss_pred cccCcEEeCCCCCCCc-CCHHHhhcc-ccCEEEecCCCCCCc
Confidence 3445555554443322 111123344 555555555555443
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.06 E-value=1e-06 Score=68.04 Aligned_cols=132 Identities=11% Similarity=0.047 Sum_probs=87.8
Q ss_pred CcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhC
Q 021667 136 LLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDAC 215 (309)
Q Consensus 136 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~ 215 (309)
..+.++++++.+..-. ....++|+.|++.++.+... . ......+++|++|++++|.++.-. ...+..+
T Consensus 8 ~~~~l~~~~~~l~~~p----~~~~~~l~~L~l~~n~l~~~--~-----~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l 75 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVP----TGIPSSATRLELESNKLQSL--P-----HGVFDKLTQLTKLSLSQNQIQSLP-DGVFDKL 75 (177)
T ss_dssp ETTEEECCSSCCSSCC----TTCCTTCSEEECCSSCCCCC--C-----TTTTTTCTTCSEEECCSSCCCCCC-TTTTTTC
T ss_pred CCCEEEecCCCCccCC----CCCCCCCcEEEeCCCcccEe--C-----HHHhcCcccccEEECCCCcceEeC-hhHccCC
Confidence 3467777777544311 12246899999998665422 1 111237899999999999776321 1223478
Q ss_pred CCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccCCC
Q 021667 216 PHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSD 285 (309)
Q Consensus 216 ~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~d 285 (309)
++|++|+++++............++ +|+.|++++|.++......+. ..+.+..+++++.....+
T Consensus 76 ~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~-----~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 76 TKLTILYLHENKLQSLPNGVFDKLT-QLKELALDTNQLKSVPDGIFD-----RLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCSCCCTTTTT-----TCTTCCEEECCSSCBCCC
T ss_pred CccCEEECCCCCccccCHHHhhCCc-ccCEEECcCCcceEeCHHHhc-----CCcccCEEEecCCCeecc
Confidence 8999999999876554444445667 999999999998755444343 456777788887765443
No 138
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.04 E-value=1.4e-06 Score=79.80 Aligned_cols=54 Identities=22% Similarity=0.256 Sum_probs=23.7
Q ss_pred CCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCC
Q 021667 108 SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGH 172 (309)
Q Consensus 108 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 172 (309)
+++|+.|+++++ .++. +.. + ..+|++|+|++|.++. +.. .+++|+.|+++++.+
T Consensus 99 l~~L~~L~Ls~N-~l~~--ip~-l--~~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l 152 (571)
T 3cvr_A 99 PASLEYLDACDN-RLST--LPE-L--PASLKHLDVDNNQLTM--LPE---LPALLEYINADNNQL 152 (571)
T ss_dssp CTTCCEEECCSS-CCSC--CCC-C--CTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCC
T ss_pred cCCCCEEEccCC-CCCC--cch-h--hcCCCEEECCCCcCCC--CCC---cCccccEEeCCCCcc
Confidence 556666666644 3322 111 1 1155555555554332 111 345555555554433
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.03 E-value=1.6e-06 Score=81.93 Aligned_cols=110 Identities=19% Similarity=0.163 Sum_probs=50.7
Q ss_pred cCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHH
Q 021667 107 RSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAI 186 (309)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l 186 (309)
.+++|+.|+|+++ .+.. +..-+..+++|++|+|++|.++. +..-...+++|+.|+|+++.+.. +. . .+
T Consensus 222 ~l~~L~~L~Ls~n-~l~~--l~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~Ls~N~l~~--lp--~---~~ 289 (727)
T 4b8c_D 222 DDQLWHALDLSNL-QIFN--ISANIFKYDFLTRLYLNGNSLTE--LPAEIKNLSNLRVLDLSHNRLTS--LP--A---EL 289 (727)
T ss_dssp CCCCCCEEECTTS-CCSC--CCGGGGGCCSCSCCBCTTSCCSC--CCGGGGGGTTCCEEECTTSCCSS--CC--S---SG
T ss_pred cCCCCcEEECCCC-CCCC--CChhhcCCCCCCEEEeeCCcCcc--cChhhhCCCCCCEEeCcCCcCCc--cC--h---hh
Confidence 3556666666644 2221 11111245666666666664431 11112345566666666544431 11 0 12
Q ss_pred HhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCc
Q 021667 187 AENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNL 231 (309)
Q Consensus 187 ~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~ 231 (309)
. .+++|++|+|++|.++. +..-+..+++|+.|+|++|.....
T Consensus 290 ~-~l~~L~~L~L~~N~l~~--lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 290 G-SCFQLKYFYFFDNMVTT--LPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp G-GGTTCSEEECCSSCCCC--CCSSTTSCTTCCCEECTTSCCCSH
T ss_pred c-CCCCCCEEECCCCCCCc--cChhhhcCCCccEEeCCCCccCCC
Confidence 2 55666666666665441 111133455666666666554433
No 140
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.98 E-value=7.3e-06 Score=75.90 Aligned_cols=119 Identities=16% Similarity=0.058 Sum_probs=79.0
Q ss_pred cCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHH
Q 021667 133 GFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAIL 212 (309)
Q Consensus 133 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~ 212 (309)
.+++|+.|++++|.++. +....++|+.|.+.++.+..- . ..+++|+.|++++|.++.-.
T Consensus 179 ~~~~L~~L~Ls~N~l~~-----l~~~~~~L~~L~L~~N~l~~l--~---------~~~~~L~~L~Ls~N~L~~lp----- 237 (622)
T 3g06_A 179 LPSGLQELSVSDNQLAS-----LPTLPSELYKLWAYNNRLTSL--P---------ALPSGLKELIVSGNRLTSLP----- 237 (622)
T ss_dssp CCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCSSC--C---------CCCTTCCEEECCSSCCSCCC-----
T ss_pred cCCCCcEEECCCCCCCC-----CCCccchhhEEECcCCccccc--C---------CCCCCCCEEEccCCccCcCC-----
Confidence 34777777777775542 112346788887776554421 1 13588999999999877521
Q ss_pred HhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccC
Q 021667 213 DACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELV 283 (309)
Q Consensus 213 ~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~ 283 (309)
..+++|+.|++++|.... +.. .++ +|+.|++++|.++... ..+. ..+.+..++++++...
T Consensus 238 ~~l~~L~~L~Ls~N~L~~-lp~---~~~-~L~~L~Ls~N~L~~lp-~~l~-----~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 238 VLPSELKELMVSGNRLTS-LPM---LPS-GLLSLSVYRNQLTRLP-ESLI-----HLSSETTVNLEGNPLS 297 (622)
T ss_dssp CCCTTCCEEECCSSCCSC-CCC---CCT-TCCEEECCSSCCCSCC-GGGG-----GSCTTCEEECCSCCCC
T ss_pred CCCCcCcEEECCCCCCCc-CCc---ccc-cCcEEeCCCCCCCcCC-HHHh-----hccccCEEEecCCCCC
Confidence 467889999999986443 332 456 9999999999987432 1232 4567778888877653
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.96 E-value=5.7e-07 Score=70.88 Aligned_cols=112 Identities=13% Similarity=0.088 Sum_probs=80.0
Q ss_pred HHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHH
Q 021667 130 AIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQ 209 (309)
Q Consensus 130 ~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~ 209 (309)
.+..+++|++|++++|.+.. +. ....+++|+.|+++++.+..- . .....+++|++|++++|.++.- .
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~~l----~----~~~~~~~~L~~L~L~~N~l~~l--~ 109 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIKKI----E----NLDAVADTLEELWISYNQIASL--S 109 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEECSC----S----SHHHHHHHCSEEEEEEEECCCH--H
T ss_pred HHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCcccc----c----chhhcCCcCCEEECcCCcCCcC--C
Confidence 45679999999999995544 22 234578999999998665421 1 1222568899999999988763 3
Q ss_pred HHHHhCCCCCeeecCCCCCcCchh-HHHHHhHhccCceecCCCCCCch
Q 021667 210 AILDACPHLESLDLRQCFNVNLVG-KLGKICAERIRDLRHPNDSTHDY 256 (309)
Q Consensus 210 ~l~~~~~~L~~L~l~~c~~~~~~~-~l~~~~~~~L~~L~l~~~~~~d~ 256 (309)
. +..+++|++|++++|....-.. .....++ +|+.|++++|++++.
T Consensus 110 ~-~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~-~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 110 G-IEKLVNLRVLYMSNNKITNWGEIDKLAALD-KLEDLLLAGNPLYND 155 (198)
T ss_dssp H-HHHHHHSSEEEESEEECCCHHHHHHHTTTT-TCSEEEECSCHHHHH
T ss_pred c-cccCCCCCEEECCCCcCCchhHHHHHhcCC-CCCEEEecCCccccc
Confidence 3 4468899999999876544221 2345677 999999999987543
No 142
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.95 E-value=4.7e-06 Score=76.47 Aligned_cols=156 Identities=17% Similarity=0.124 Sum_probs=95.3
Q ss_pred cCCCccEEEeCCCCCC-----------CHHHHHHHHhcCCCcCEEE-ecCCCCC--------HHHHHHHHhcCCCCcEEE
Q 021667 107 RSRNLRNLRLVSCYNI-----------SDQGFCEAIKGFPLLEELE-LSYCSLS--------QEALEAVGSLCPLLRSFK 166 (309)
Q Consensus 107 ~~~~L~~L~l~~~~~~-----------~~~~~~~~~~~~~~L~~L~-L~~~~~~--------~~~~~~l~~~~~~L~~L~ 166 (309)
.+++|+.|++.++..+ ........+..+++|+.|+ ++.+.+. ...+..+. ...|+.|+
T Consensus 370 ~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~--~~~L~~L~ 447 (567)
T 1dce_A 370 SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKME--YADVRVLH 447 (567)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHH--HTTCSEEE
T ss_pred HHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccC--ccCceEEE
Confidence 4677777776543200 0112233455667777777 4444221 11122221 23688999
Q ss_pred eccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCce
Q 021667 167 LNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDL 246 (309)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L 246 (309)
++++.+... . .+. .+++|+.|+|++|.++ .+..-+..+++|+.|+|++|...+ +. -...++ +|+.|
T Consensus 448 Ls~n~l~~l----p----~~~-~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~-~L~~L 513 (567)
T 1dce_A 448 LAHKDLTVL----C----HLE-QLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALEN-VD-GVANLP-RLQEL 513 (567)
T ss_dssp CTTSCCSSC----C----CGG-GGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCS-SCCEE
T ss_pred ecCCCCCCC----c----Ccc-ccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCC-CCcEE
Confidence 987665421 1 233 7889999999999776 222234578899999998876554 33 344566 89999
Q ss_pred ecCCCCCCchh-hhhhhhhhccCCcCCCCCCCCccccC
Q 021667 247 RHPNDSTHDYE-FGADFQDFCWSSVEDYPSGISDIELV 283 (309)
Q Consensus 247 ~l~~~~~~d~~-~~~~~~~~c~~~~~l~~~~~s~~~~~ 283 (309)
+|++|.++... ...+. ..+.|..+++++..+.
T Consensus 514 ~Ls~N~l~~~~~p~~l~-----~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 514 LLCNNRLQQSAAIQPLV-----SCPRLVLLNLQGNSLC 546 (567)
T ss_dssp ECCSSCCCSSSTTGGGG-----GCTTCCEEECTTSGGG
T ss_pred ECCCCCCCCCCCcHHHh-----cCCCCCEEEecCCcCC
Confidence 99999887664 44443 5567788888876553
No 143
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.90 E-value=1.7e-06 Score=81.73 Aligned_cols=114 Identities=20% Similarity=0.142 Sum_probs=76.3
Q ss_pred HHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHH
Q 021667 129 EAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGL 208 (309)
Q Consensus 129 ~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l 208 (309)
..+..++.|+.|+|++|.+.. +..-...+++|+.|+|+++.+.. +. ..+. .+++|+.|+|++|.++ .+
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~~--lp-----~~~~-~l~~L~~L~Ls~N~l~--~l 285 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLTE--LP-----AEIK-NLSNLRVLDLSHNRLT--SL 285 (727)
T ss_dssp ----CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCCSC--CC-----GGGG-GGTTCCEEECTTSCCS--SC
T ss_pred hhhccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcCcc--cC-----hhhh-CCCCCCEEeCcCCcCC--cc
Confidence 345567899999999985542 11112358899999999876651 11 1233 7899999999999777 22
Q ss_pred HHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCch
Q 021667 209 QAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDY 256 (309)
Q Consensus 209 ~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~ 256 (309)
..-+..+++|++|+|++|... .+..-...++ +|+.|+|++|.++..
T Consensus 286 p~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~-~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFDNMVT-TLPWEFGNLC-NLQFLGVEGNPLEKQ 331 (727)
T ss_dssp CSSGGGGTTCSEEECCSSCCC-CCCSSTTSCT-TCCCEECTTSCCCSH
T ss_pred ChhhcCCCCCCEEECCCCCCC-ccChhhhcCC-CccEEeCCCCccCCC
Confidence 222456889999999988654 3222245567 899999999998754
No 144
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.89 E-value=4e-06 Score=65.77 Aligned_cols=129 Identities=15% Similarity=0.010 Sum_probs=86.1
Q ss_pred CEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCC
Q 021667 138 EELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPH 217 (309)
Q Consensus 138 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~ 217 (309)
+.++++++.++.-. ....++|+.|++.++.+... . ..+. .+++|+.|++++|.++.-... .+..+++
T Consensus 13 ~~l~~~~~~l~~ip----~~~~~~l~~L~L~~n~i~~i----p---~~~~-~l~~L~~L~Ls~N~i~~i~~~-~f~~l~~ 79 (193)
T 2wfh_A 13 TVVRCSNKGLKVLP----KGIPRDVTELYLDGNQFTLV----P---KELS-NYKHLTLIDLSNNRISTLSNQ-SFSNMTQ 79 (193)
T ss_dssp TEEECTTSCCSSCC----SCCCTTCCEEECCSSCCCSC----C---GGGG-GCTTCCEEECCSSCCCCCCTT-TTTTCTT
T ss_pred CEEEcCCCCCCcCC----CCCCCCCCEEECCCCcCchh----H---HHhh-cccCCCEEECCCCcCCEeCHh-HccCCCC
Confidence 56777777544210 01236899999998766421 1 1333 899999999999987743222 2347899
Q ss_pred CCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccCCC
Q 021667 218 LESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSD 285 (309)
Q Consensus 218 L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~d 285 (309)
|++|+++++.............+ +|+.|+|++|.++......+. ..+.+..+++++....-|
T Consensus 80 L~~L~Ls~N~l~~i~~~~f~~l~-~L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 80 LLTLILSYNRLRCIPPRTFDGLK-SLRLLSLHGNDISVVPEGAFN-----DLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTT-----TCTTCCEEECCSSCEECS
T ss_pred CCEEECCCCccCEeCHHHhCCCC-CCCEEECCCCCCCeeChhhhh-----cCccccEEEeCCCCeecC
Confidence 99999999875554333445667 999999999998765554454 455677777776555433
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.83 E-value=3.4e-06 Score=64.68 Aligned_cols=63 Identities=17% Similarity=0.145 Sum_probs=28.7
Q ss_pred cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCC
Q 021667 189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDST 253 (309)
Q Consensus 189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~ 253 (309)
.+++|++|+|++|.++.-. ...+..+++|++|+|+++....-.......++ +|+.|+|++|++
T Consensus 52 ~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~~ 114 (170)
T 3g39_A 52 RLTQLTRLDLDNNQLTVLP-AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLK-SLTHIWLLNNPW 114 (170)
T ss_dssp TCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCB
T ss_pred CcccCCEEECCCCCcCccC-hhhccCCCCCCEEECCCCccCEeCHHHhcCCC-CCCEEEeCCCCC
Confidence 4455555555555444211 11123455555555555443332222233344 566666666554
No 146
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.82 E-value=2.2e-06 Score=67.12 Aligned_cols=131 Identities=11% Similarity=0.060 Sum_probs=83.2
Q ss_pred CEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCC
Q 021667 138 EELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPH 217 (309)
Q Consensus 138 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~ 217 (309)
+.++++++.++.-. . ...++|+.|.+.++.+... . . ......+++|++|++++|.++..... .+..+++
T Consensus 11 ~~l~~s~~~l~~ip--~--~~~~~l~~L~l~~n~i~~~--~-~---~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~ 79 (192)
T 1w8a_A 11 TTVDCTGRGLKEIP--R--DIPLHTTELLLNDNELGRI--S-S---DGLFGRLPHLVKLELKRNQLTGIEPN-AFEGASH 79 (192)
T ss_dssp TEEECTTSCCSSCC--S--CCCTTCSEEECCSCCCCSB--C-C---SCSGGGCTTCCEEECCSSCCCCBCTT-TTTTCTT
T ss_pred CEEEcCCCCcCcCc--c--CCCCCCCEEECCCCcCCcc--C-C---ccccccCCCCCEEECCCCCCCCcCHh-HcCCccc
Confidence 56777776443210 0 1123788888877555321 1 0 01123789999999999977743222 2346899
Q ss_pred CCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccCCC
Q 021667 218 LESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSD 285 (309)
Q Consensus 218 L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~d 285 (309)
|++|+++++.............+ +|+.|++++|.++......+. ..+.+..+++++..+.-|
T Consensus 80 L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 80 IQELQLGENKIKEISNKMFLGLH-QLKTLNLYDNQISCVMPGSFE-----HLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCEEECCSCCCCEECSSSSTTCT-TCCEEECCSSCCCEECTTSST-----TCTTCCEEECTTCCBCCS
T ss_pred CCEEECCCCcCCccCHHHhcCCC-CCCEEECCCCcCCeeCHHHhh-----cCCCCCEEEeCCCCccCc
Confidence 99999999876554333344567 999999999998765444443 455677777777665433
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.82 E-value=3.8e-06 Score=71.62 Aligned_cols=81 Identities=15% Similarity=0.125 Sum_probs=53.4
Q ss_pred CCceEEeccccCChHHHHHHHhcCCCccEEEeCCCCCCC---------HH---------H-HHHHHhc--------CCCc
Q 021667 85 GQLLSINIEYFGTDELLQYIANRSRNLRNLRLVSCYNIS---------DQ---------G-FCEAIKG--------FPLL 137 (309)
Q Consensus 85 ~~l~~l~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~---------~~---------~-~~~~~~~--------~~~L 137 (309)
..+++|.+...+....+..+...+++|+.|+|+++ .+. .. . -...+.. |++|
T Consensus 25 ~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n-~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L 103 (329)
T 3sb4_A 25 NSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNA-EIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTL 103 (329)
T ss_dssp HHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEE-EECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTC
T ss_pred CceeEEEEeccccHHHHHHHHHhhccCeEEecCcc-eeEEecCccccccccccccccccccCHHHhcccccccccccCCC
Confidence 36788888777777777777666899999999854 222 00 0 0123446 8999
Q ss_pred CEEEecCC--CCCHHHHHHHHhcCCCCcEEEeccC
Q 021667 138 EELELSYC--SLSQEALEAVGSLCPLLRSFKLNNR 170 (309)
Q Consensus 138 ~~L~L~~~--~~~~~~~~~l~~~~~~L~~L~l~~~ 170 (309)
++|.|... .+.+.. ...|++|+.|.+..+
T Consensus 104 ~~l~L~~~i~~I~~~a----F~~~~~L~~l~l~~n 134 (329)
T 3sb4_A 104 EKVILSEKIKNIEDAA----FKGCDNLKICQIRKK 134 (329)
T ss_dssp CC-CBCTTCCEECTTT----TTTCTTCCEEEBCCS
T ss_pred cEEECCccccchhHHH----hhcCcccceEEcCCC
Confidence 99999883 333322 356899999999764
No 148
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.78 E-value=8.3e-06 Score=74.68 Aligned_cols=150 Identities=12% Similarity=0.021 Sum_probs=95.9
Q ss_pred CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667 84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL 162 (309)
Q Consensus 84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L 162 (309)
.++|+.|++++ .++. +..+ ..+|+.|+++++ .++. +.. .+++|+.|+|++|.++. +. ..+++|
T Consensus 99 l~~L~~L~Ls~N~l~~--ip~l---~~~L~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N~l~~--lp---~~l~~L 162 (571)
T 3cvr_A 99 PASLEYLDACDNRLST--LPEL---PASLKHLDVDNN-QLTM--LPE---LPALLEYINADNNQLTM--LP---ELPTSL 162 (571)
T ss_dssp CTTCCEEECCSSCCSC--CCCC---CTTCCEEECCSS-CCSC--CCC---CCTTCCEEECCSSCCSC--CC---CCCTTC
T ss_pred cCCCCEEEccCCCCCC--cchh---hcCCCEEECCCC-cCCC--CCC---cCccccEEeCCCCccCc--CC---CcCCCc
Confidence 46777777754 3332 1111 239999999976 4443 222 57999999999997653 11 257899
Q ss_pred cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHH-H-HHHHHhCCCCCeeecCCCCCcCchhHHHHHhH
Q 021667 163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVG-L-QAILDACPHLESLDLRQCFNVNLVGKLGKICA 240 (309)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~-l-~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~ 240 (309)
+.|+++++.+... . . +. ++|+.|+|++|.++.-. + ..+....+.|+.|++++|....-...+.. ++
T Consensus 163 ~~L~Ls~N~L~~l--p--~----l~---~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~-l~ 230 (571)
T 3cvr_A 163 EVLSVRNNQLTFL--P--E----LP---ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILS-LD 230 (571)
T ss_dssp CEEECCSSCCSCC--C--C----CC---TTCCEEECCSSCCSSCCCCC--------CCEEEECCSSCCCCCCGGGGG-SC
T ss_pred CEEECCCCCCCCc--c--h----hh---CCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCCcceecCHHHhc-CC
Confidence 9999998766531 1 1 11 89999999999776211 1 01222233449999999875543333433 77
Q ss_pred hccCceecCCCCCCchhhhhhh
Q 021667 241 ERIRDLRHPNDSTHDYEFGADF 262 (309)
Q Consensus 241 ~~L~~L~l~~~~~~d~~~~~~~ 262 (309)
+|+.|+|++|+++......+.
T Consensus 231 -~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 231 -PTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp -TTEEEECCSSSCCHHHHHHHH
T ss_pred -CCCEEEeeCCcCCCcCHHHHH
Confidence 999999999999876555543
No 149
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.71 E-value=8.3e-06 Score=69.53 Aligned_cols=74 Identities=23% Similarity=0.255 Sum_probs=39.7
Q ss_pred HHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCc-hhHHHHHhHhccC-ceecCCCCCCchhhhhh
Q 021667 184 KAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNL-VGKLGKICAERIR-DLRHPNDSTHDYEFGAD 261 (309)
Q Consensus 184 ~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~-~~~l~~~~~~~L~-~L~l~~~~~~d~~~~~~ 261 (309)
..+...|++|+.|+|.+|.++.-+-. .+.+|++|+.|++.++ ++. .......|+ +|+ .+.+++ .++..+-.+|
T Consensus 219 ~~l~~~~~~L~~l~L~~n~i~~I~~~-aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~-~L~~~l~l~~-~l~~I~~~aF 293 (329)
T 3sb4_A 219 KLIRDYMPNLVSLDISKTNATTIPDF-TFAQKKYLLKIKLPHN--LKTIGQRVFSNCG-RLAGTLELPA-SVTAIEFGAF 293 (329)
T ss_dssp HHHHHHCTTCCEEECTTBCCCEECTT-TTTTCTTCCEEECCTT--CCEECTTTTTTCT-TCCEEEEECT-TCCEECTTTT
T ss_pred HHHHHhcCCCeEEECCCCCcceecHh-hhhCCCCCCEEECCcc--cceehHHHhhCCh-hccEEEEEcc-cceEEchhhh
Confidence 34444567777777776544421111 2235677777777653 333 223344566 676 777766 5555555555
Q ss_pred h
Q 021667 262 F 262 (309)
Q Consensus 262 ~ 262 (309)
.
T Consensus 294 ~ 294 (329)
T 3sb4_A 294 M 294 (329)
T ss_dssp T
T ss_pred h
Confidence 3
No 150
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.71 E-value=7.8e-05 Score=61.23 Aligned_cols=87 Identities=25% Similarity=0.310 Sum_probs=49.6
Q ss_pred HHhcCCCcCEEEecCCCCCHH-HHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccCh---
Q 021667 130 AIKGFPLLEELELSYCSLSQE-ALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTN--- 205 (309)
Q Consensus 130 ~~~~~~~L~~L~L~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~--- 205 (309)
+...+++|++|+|++|.+..- .+..+...+|+|+.|+|+++.+... ..+..+. .+ +|++|.|.+|.++.
T Consensus 165 ~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-----~~l~~l~-~l-~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 165 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-----RELDKIK-GL-KLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-----GGGGGGT-TS-CCSEEECTTSTTGGGCS
T ss_pred HHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-----hhhhhcc-cC-CcceEEccCCcCccccC
Confidence 335677888888888765431 1223334577777777776554321 1222222 23 77777777776653
Q ss_pred ---HHHHHHHHhCCCCCeeec
Q 021667 206 ---VGLQAILDACPHLESLDL 223 (309)
Q Consensus 206 ---~~l~~l~~~~~~L~~L~l 223 (309)
.....++..+|+|+.|+=
T Consensus 238 ~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 238 DQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp SHHHHHHHHHHHCTTCCEESS
T ss_pred cchhHHHHHHHHCcccCeECC
Confidence 223355566777777753
No 151
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.64 E-value=1.9e-05 Score=70.52 Aligned_cols=59 Identities=17% Similarity=0.024 Sum_probs=31.9
Q ss_pred cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCc
Q 021667 189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHD 255 (309)
Q Consensus 189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d 255 (309)
.+++|++|++++|.++. + -...++|++|++++|... .... ...++ +|+.|++++|.++.
T Consensus 193 ~l~~L~~L~l~~N~l~~--l---~~~~~~L~~L~l~~n~l~-~lp~-~~~l~-~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 193 NLPFLTAIYADNNSLKK--L---PDLPLSLESIVAGNNILE-ELPE-LQNLP-FLTTIYADNNLLKT 251 (454)
T ss_dssp TCTTCCEEECCSSCCSS--C---CCCCTTCCEEECCSSCCS-SCCC-CTTCT-TCCEEECCSSCCSS
T ss_pred CCCCCCEEECCCCcCCc--C---CCCcCcccEEECcCCcCC-cccc-cCCCC-CCCEEECCCCcCCc
Confidence 56666666666665542 0 012245666666666433 2222 23455 67777777776653
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.59 E-value=1.4e-05 Score=61.44 Aligned_cols=36 Identities=14% Similarity=0.027 Sum_probs=15.4
Q ss_pred CCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCC
Q 021667 135 PLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRG 171 (309)
Q Consensus 135 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 171 (309)
++|+.|+|++|.+.... ......+++|+.|+++++.
T Consensus 33 ~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~ 68 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLE-PGVFDHLVNLQQLYFNSNK 68 (174)
T ss_dssp TTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred CCCcEEEeCCCCccccC-HHHhcCCcCCCEEECCCCC
Confidence 45555555555433210 0111234455555555433
No 153
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.59 E-value=5.7e-05 Score=67.34 Aligned_cols=57 Identities=16% Similarity=0.173 Sum_probs=34.1
Q ss_pred CCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCc
Q 021667 191 HGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHD 255 (309)
Q Consensus 191 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d 255 (309)
++|++|++++|.++. +.. +..+++|++|++++|.... ... ..+ +|+.|++++|.++.
T Consensus 215 ~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~~-~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 215 LSLESIVAGNNILEE--LPE-LQNLPFLTTIYADNNLLKT-LPD---LPP-SLEALNVRDNYLTD 271 (454)
T ss_dssp TTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCCSS-CCS---CCT-TCCEEECCSSCCSC
T ss_pred CcccEEECcCCcCCc--ccc-cCCCCCCCEEECCCCcCCc-ccc---ccc-ccCEEECCCCcccc
Confidence 477888888776552 222 3367778888887765433 111 124 67777777776554
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.43 E-value=8.4e-05 Score=56.79 Aligned_cols=89 Identities=15% Similarity=0.058 Sum_probs=61.9
Q ss_pred CCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCC
Q 021667 190 MHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSS 269 (309)
Q Consensus 190 ~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~ 269 (309)
.++|++|+|++|.++.-.- ..+..+++|++|+++++.............+ +|+.|+|++|.++......+. ..
T Consensus 29 ~~~l~~L~L~~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~-~L~~L~L~~N~l~~~~~~~~~-----~l 101 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEP-GVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT-QLTQLSLNDNQLKSIPRGAFD-----NL 101 (170)
T ss_dssp CTTCSEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTT-----TC
T ss_pred CCCCcEEEcCCCcCCccCh-hhhcCcccCCEEECCCCCcCccChhhccCCC-CCCEEECCCCccCEeCHHHhc-----CC
Confidence 3789999999997764221 1234688999999999875554444445677 999999999998765544443 45
Q ss_pred cCCCCCCCCccccCCC
Q 021667 270 VEDYPSGISDIELVSD 285 (309)
Q Consensus 270 ~~l~~~~~s~~~~~~d 285 (309)
+.|..+++++-.+.-+
T Consensus 102 ~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 102 KSLTHIWLLNNPWDCA 117 (170)
T ss_dssp TTCCEEECCSSCBCTT
T ss_pred CCCCEEEeCCCCCCCC
Confidence 5677777776655433
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.36 E-value=0.00022 Score=58.49 Aligned_cols=124 Identities=19% Similarity=0.197 Sum_probs=76.5
Q ss_pred hHHHHHHHHHhccCCCceEEeccccCC-------------------hHHHHHHHhcCCCccEEEeCCCCCCCH-HHHHHH
Q 021667 71 DLEKMCRHAVDRSNGQLLSINIEYFGT-------------------DELLQYIANRSRNLRNLRLVSCYNISD-QGFCEA 130 (309)
Q Consensus 71 ~~~~~~~~~~~~~~~~l~~l~l~~~~~-------------------~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~ 130 (309)
.+..+-.....+....-+.|+++.... ...+..+...+++|+.|+|+++ .++. .++..+
T Consensus 113 ~~~~Lk~~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N-~l~~l~~l~~~ 191 (267)
T 3rw6_A 113 QVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNN-RLYRLDDMSSI 191 (267)
T ss_dssp HHHHHHHHHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTS-CCCCCGGGTTH
T ss_pred HHHHHHHHHHhccchhccccCHHHcCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCC-CCCCCccchhH
Confidence 344444444455666666666643111 1223444456899999999976 5543 345556
Q ss_pred HhcCCCcCEEEecCCCCCHH-HHHHHHhcCCCCcEEEeccCCCCCCCcc-cchhHHHHHhcCCCCcEEEe
Q 021667 131 IKGFPLLEELELSYCSLSQE-ALEAVGSLCPLLRSFKLNNRGHRCPKIE-CDDDAKAIAENMHGLRHLQL 198 (309)
Q Consensus 131 ~~~~~~L~~L~L~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~l~~~~~~L~~L~l 198 (309)
+..+++|+.|+|++|.+.+. .+..+ ..+ +|++|.+.++.+... +. .......+...+|+|+.|+=
T Consensus 192 ~~~l~~L~~L~Ls~N~i~~~~~l~~l-~~l-~L~~L~L~~Npl~~~-~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 192 VQKAPNLKILNLSGNELKSERELDKI-KGL-KLEELWLDGNSLCDT-FRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHSTTCCEEECTTSCCCSGGGGGGG-TTS-CCSEEECTTSTTGGG-CSSHHHHHHHHHHHCTTCCEESS
T ss_pred HhhCCCCCEEECCCCccCCchhhhhc-ccC-CcceEEccCCcCccc-cCcchhHHHHHHHHCcccCeECC
Confidence 67899999999999987653 22222 223 899999998665321 11 11233455669999998863
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.28 E-value=6.6e-05 Score=57.65 Aligned_cols=105 Identities=15% Similarity=0.123 Sum_probs=71.9
Q ss_pred cCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCC
Q 021667 137 LEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACP 216 (309)
Q Consensus 137 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~ 216 (309)
-+.++++++.++.-. ..-.++|+.|+++++.+... . ...+ ..+++|+.|+|++|.++.-. ..++..++
T Consensus 14 ~~~l~~~~n~l~~iP----~~~~~~L~~L~Ls~N~l~~~--~----~~~~-~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~ 81 (174)
T 2r9u_A 14 QTLVNCQNIRLASVP----AGIPTDKQRLWLNNNQITKL--E----PGVF-DHLVNLQQLYFNSNKLTAIP-TGVFDKLT 81 (174)
T ss_dssp SSEEECCSSCCSSCC----SCCCTTCSEEECCSSCCCCC--C----TTTT-TTCTTCCEEECCSSCCCCCC-TTTTTTCT
T ss_pred CcEEEeCCCCCCccC----CCcCCCCcEEEeCCCCcccc--C----HHHh-cCCcCCCEEECCCCCCCccC-hhHhCCcc
Confidence 367888887553210 01137899999998766432 1 1122 37899999999999777421 12335689
Q ss_pred CCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCC
Q 021667 217 HLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTH 254 (309)
Q Consensus 217 ~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~ 254 (309)
+|+.|+|+++....-.......++ +|+.|+|++|++.
T Consensus 82 ~L~~L~L~~N~l~~l~~~~~~~l~-~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 82 QLTQLDLNDNHLKSIPRGAFDNLK-SLTHIYLYNNPWD 118 (174)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCBC
T ss_pred hhhEEECCCCccceeCHHHhcccc-CCCEEEeCCCCcc
Confidence 999999999876554434455677 9999999999974
No 157
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.15 E-value=2.9e-06 Score=73.03 Aligned_cols=63 Identities=14% Similarity=0.018 Sum_probs=41.2
Q ss_pred CCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchh-HHHHHhHhccCceecCCCCCCch
Q 021667 191 HGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVG-KLGKICAERIRDLRHPNDSTHDY 256 (309)
Q Consensus 191 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~-~l~~~~~~~L~~L~l~~~~~~d~ 256 (309)
..|+.|++++|.++.-.-. +-...+|+.|.+.+++.++.+. .....++ +|+.|++++|.++..
T Consensus 154 ~~l~~L~L~~N~i~~i~~~--~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~-~L~~LdLs~N~l~~l 217 (350)
T 4ay9_X 154 FESVILWLNKNGIQEIHNS--AFNGTQLDELNLSDNNNLEELPNDVFHGAS-GPVILDISRTRIHSL 217 (350)
T ss_dssp SSCEEEECCSSCCCEECTT--SSTTEEEEEEECTTCTTCCCCCTTTTTTEE-CCSEEECTTSCCCCC
T ss_pred hhhhhhccccccccCCChh--hccccchhHHhhccCCcccCCCHHHhccCc-ccchhhcCCCCcCcc
Confidence 3577888888876631111 1124568888888777666643 3445667 899999999887543
No 158
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.02 E-value=4.3e-06 Score=71.96 Aligned_cols=181 Identities=9% Similarity=-0.017 Sum_probs=89.4
Q ss_pred CCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEE-EecCCCCCHHHHHHHHhcCCCC
Q 021667 85 GQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEEL-ELSYCSLSQEALEAVGSLCPLL 162 (309)
Q Consensus 85 ~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L-~L~~~~~~~~~~~~l~~~~~~L 162 (309)
.++++|++.+ .++. .-.....++++|++|+|+++...+.. -...+..+++|+++ .+.++.+..-. ......+++|
T Consensus 30 ~~l~~L~Ls~N~i~~-i~~~~f~~l~~L~~L~Ls~N~i~~~i-~~~~f~~L~~l~~~l~~~~N~l~~l~-~~~f~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVI-EADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPNL 106 (350)
T ss_dssp TTCSEEEEESCCCSE-ECTTSSTTCTTCCEEEEECCTTCCEE-CTTSBCSCTTCCEEEEEEETTCCEEC-TTSBCCCTTC
T ss_pred CCCCEEEccCCcCCC-cCHHHHcCCCCCCEEECcCCCCCCcc-ChhHhhcchhhhhhhcccCCcccccC-chhhhhcccc
Confidence 4567777743 2221 11112234777888888765322210 01123345666653 44444443210 1122456788
Q ss_pred cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCC-ccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHh
Q 021667 163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGN-ELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAE 241 (309)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~ 241 (309)
+.|++.++.+... ... .. ....++..|.+.++ .++.-....+......++.|+++++.... +..-.....
T Consensus 107 ~~L~l~~n~l~~~--~~~----~~-~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~- 177 (350)
T 4ay9_X 107 QYLLISNTGIKHL--PDV----HK-IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGT- 177 (350)
T ss_dssp CEEEEEEECCSSC--CCC----TT-CCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTE-
T ss_pred ccccccccccccC--Cch----hh-cccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhhcccc-
Confidence 8888876554322 100 00 13445667777654 44321111111122357788887765433 222222335
Q ss_pred ccCceecCCC-CCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667 242 RIRDLRHPND-STHDYEFGADFQDFCWSSVEDYPSGISDIEL 282 (309)
Q Consensus 242 ~L~~L~l~~~-~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~ 282 (309)
+|++|.+.++ .++.....++. ..+.|+.+|+++...
T Consensus 178 ~L~~l~l~~~n~l~~i~~~~f~-----~l~~L~~LdLs~N~l 214 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPNDVFH-----GASGPVILDISRTRI 214 (350)
T ss_dssp EEEEEECTTCTTCCCCCTTTTT-----TEECCSEEECTTSCC
T ss_pred chhHHhhccCCcccCCCHHHhc-----cCcccchhhcCCCCc
Confidence 7888888764 46655555554 455677778876643
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.70 E-value=0.00027 Score=60.48 Aligned_cols=91 Identities=21% Similarity=0.101 Sum_probs=55.4
Q ss_pred HhcCCCcCEEEecC-CCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHH
Q 021667 131 IKGFPLLEELELSY-CSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQ 209 (309)
Q Consensus 131 ~~~~~~L~~L~L~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~ 209 (309)
+..+++|++|+|++ |.+..... .....+++|+.|+|+++.+... . ...+ ..+++|+.|+|++|.++.-. .
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~--~----~~~~-~~l~~L~~L~l~~N~l~~~~-~ 97 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKSGLRFV--A----PDAF-HFTPRLSRLNLSFNALESLS-W 97 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECG-GGSCSCCCCSEEECCSSCCCEE--C----TTGG-GSCSCCCEEECCSSCCSCCC-S
T ss_pred CCCCCCeeEEEccCCCCCCCcCh-hHhccccCCCEEECCCCcccee--C----HHHh-cCCcCCCEEeCCCCccceeC-H
Confidence 55678899999986 76643211 1234578899999987655421 1 1122 27888999999888766311 1
Q ss_pred HHHHhCCCCCeeecCCCCCcCc
Q 021667 210 AILDACPHLESLDLRQCFNVNL 231 (309)
Q Consensus 210 ~l~~~~~~L~~L~l~~c~~~~~ 231 (309)
.++...+ |+.|+|.++...-+
T Consensus 98 ~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 98 KTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp TTTCSCC-CCEEECCSSCCCCC
T ss_pred HHcccCC-ceEEEeeCCCccCC
Confidence 1222233 88888887765543
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.31 E-value=0.00078 Score=57.55 Aligned_cols=111 Identities=16% Similarity=0.121 Sum_probs=71.0
Q ss_pred EEEecCC-CCCHHHHHHHHhcCCCCcEEEecc-CCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCC
Q 021667 139 ELELSYC-SLSQEALEAVGSLCPLLRSFKLNN-RGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACP 216 (309)
Q Consensus 139 ~L~L~~~-~~~~~~~~~l~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~ 216 (309)
.++++++ .++. +.. ...+.+|+.|+|++ +.+... . ...+ ..+++|+.|+|++|.++.-.- ..+..++
T Consensus 12 ~v~~~~~n~l~~--ip~-l~~~~~L~~L~l~~~n~l~~~----~--~~~~-~~l~~L~~L~l~~N~l~~~~~-~~~~~l~ 80 (347)
T 2ifg_A 12 GLRCTRDGALDS--LHH-LPGAENLTELYIENQQHLQHL----E--LRDL-RGLGELRNLTIVKSGLRFVAP-DAFHFTP 80 (347)
T ss_dssp CEECCSSCCCTT--TTT-SCSCSCCSEEECCSCSSCCEE----C--GGGS-CSCCCCSEEECCSSCCCEECT-TGGGSCS
T ss_pred EEEcCCCCCCCc--cCC-CCCCCCeeEEEccCCCCCCCc----C--hhHh-ccccCCCEEECCCCccceeCH-HHhcCCc
Confidence 4566665 5543 222 45577899999985 555321 1 1122 378999999999998774221 2345789
Q ss_pred CCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCC-chhhhhhh
Q 021667 217 HLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTH-DYEFGADF 262 (309)
Q Consensus 217 ~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~-d~~~~~~~ 262 (309)
+|++|+|+++....-....... . .|+.|+|.+|+++ |..+..+.
T Consensus 81 ~L~~L~l~~N~l~~~~~~~~~~-~-~L~~l~l~~N~~~c~c~l~~~~ 125 (347)
T 2ifg_A 81 RLSRLNLSFNALESLSWKTVQG-L-SLQELVLSGNPLHCSCALRWLQ 125 (347)
T ss_dssp CCCEEECCSSCCSCCCSTTTCS-C-CCCEEECCSSCCCCCGGGHHHH
T ss_pred CCCEEeCCCCccceeCHHHccc-C-CceEEEeeCCCccCCCccHHHH
Confidence 9999999998755432222222 2 4999999999974 55544443
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.63 E-value=0.00083 Score=58.76 Aligned_cols=70 Identities=16% Similarity=0.313 Sum_probs=37.7
Q ss_pred cCCCCcEEEecCCccChHH----HHHHHHhCCCCCeeecCCCCCcCch-hHHHHHhHhccCceecCCCCCCchhhhhhh
Q 021667 189 NMHGLRHLQLFGNELTNVG----LQAILDACPHLESLDLRQCFNVNLV-GKLGKICAERIRDLRHPNDSTHDYEFGADF 262 (309)
Q Consensus 189 ~~~~L~~L~l~~~~i~~~~----l~~l~~~~~~L~~L~l~~c~~~~~~-~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~ 262 (309)
.|++|+.+.+.++.+.... -...+.+|++|+.+.+.. .++.+ ......|. +|+.+.|+.+ ++..+..+|.
T Consensus 269 ~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~-~L~~l~lp~~-l~~I~~~aF~ 343 (401)
T 4fdw_A 269 YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNR-KVTQLTIPAN-VTQINFSAFN 343 (401)
T ss_dssp TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCC-SCCEEEECTT-CCEECTTSSS
T ss_pred CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCC-CccEEEECcc-ccEEcHHhCC
Confidence 6777777777765322000 011233677777777763 23332 23344566 7777777543 5544555553
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.48 E-value=0.0017 Score=56.72 Aligned_cols=66 Identities=14% Similarity=0.152 Sum_probs=41.6
Q ss_pred CCCcEEEecCC--ccChHHHHHHHHhCCCCCeeecCCCCCc-----CchhHHHHHhHhccCceecCCCCCCchhhhhhh
Q 021667 191 HGLRHLQLFGN--ELTNVGLQAILDACPHLESLDLRQCFNV-----NLVGKLGKICAERIRDLRHPNDSTHDYEFGADF 262 (309)
Q Consensus 191 ~~L~~L~l~~~--~i~~~~l~~l~~~~~~L~~L~l~~c~~~-----~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~ 262 (309)
.+|+.+.+..+ .|.... +.+|++|+.+.+.++... .-.......|+ +|+.+.++. .++..+..+|.
T Consensus 248 ~~L~~i~lp~~i~~I~~~a----F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~-~L~~l~l~~-~i~~I~~~aF~ 320 (401)
T 4fdw_A 248 SGITTVKLPNGVTNIASRA----FYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP-KLARFEIPE-SIRILGQGLLG 320 (401)
T ss_dssp CCCSEEEEETTCCEECTTT----TTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCT-TCCEECCCT-TCCEECTTTTT
T ss_pred CCccEEEeCCCccEEChhH----hhCCCCCCEEEeCCccccCCcccEECHHHhhCCc-cCCeEEeCC-ceEEEhhhhhc
Confidence 56777777554 333322 347889999988765432 11234456788 899999984 46666666664
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=88.22 E-value=0.12 Score=44.64 Aligned_cols=56 Identities=11% Similarity=0.300 Sum_probs=24.3
Q ss_pred cCCCCcEEEecCC--ccChHHHHHHHHhCCCCCeeecCCCCCcCch-hHHHHHhHhccCceecCCC
Q 021667 189 NMHGLRHLQLFGN--ELTNVGLQAILDACPHLESLDLRQCFNVNLV-GKLGKICAERIRDLRHPND 251 (309)
Q Consensus 189 ~~~~L~~L~l~~~--~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~-~~l~~~~~~~L~~L~l~~~ 251 (309)
.|.+|+.+.|..+ .|.+.. +.+|.+|+.+.|-.. ++.+ ......|. +|+.+.++++
T Consensus 309 ~c~~L~~i~lp~~v~~I~~~a----F~~C~~L~~i~ip~s--v~~I~~~aF~~C~-~L~~i~~~~~ 367 (394)
T 4gt6_A 309 GCISLKSIDIPEGITQILDDA----FAGCEQLERIAIPSS--VTKIPESAFSNCT-ALNNIEYSGS 367 (394)
T ss_dssp TCTTCCEEECCTTCCEECTTT----TTTCTTCCEEEECTT--CCBCCGGGGTTCT-TCCEEEESSC
T ss_pred CCCCcCEEEeCCcccEehHhH----hhCCCCCCEEEECcc--cCEEhHhHhhCCC-CCCEEEECCc
Confidence 4555555555443 233322 224555555555321 2221 12234455 5555555553
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=84.44 E-value=0.12 Score=44.30 Aligned_cols=13 Identities=8% Similarity=0.105 Sum_probs=6.5
Q ss_pred cCCCCcEEEecCC
Q 021667 189 NMHGLRHLQLFGN 201 (309)
Q Consensus 189 ~~~~L~~L~l~~~ 201 (309)
.|++|+.+.+.++
T Consensus 284 ~c~~L~~i~l~~~ 296 (379)
T 4h09_A 284 GCSNLTKVVMDNS 296 (379)
T ss_dssp TCTTCCEEEECCT
T ss_pred ccccccccccccc
Confidence 4455555555443
No 165
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=84.00 E-value=0.39 Score=41.48 Aligned_cols=77 Identities=14% Similarity=0.232 Sum_probs=46.9
Q ss_pred cCCCCcEEEecCC--ccChHHHHHHHHhCCCCCeeecCCCCCcCch-hHHHHHhHhccCceecCCCCCCchhhhhhhhhh
Q 021667 189 NMHGLRHLQLFGN--ELTNVGLQAILDACPHLESLDLRQCFNVNLV-GKLGKICAERIRDLRHPNDSTHDYEFGADFQDF 265 (309)
Q Consensus 189 ~~~~L~~L~l~~~--~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~-~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~ 265 (309)
.+.+|+.+.+..+ .|.+.. +.+|.+|+.+++... ++.+ ......|. +|+.+.++.+ ++..+-.+|.
T Consensus 295 ~~~~L~~i~l~~~i~~I~~~a----F~~c~~L~~i~lp~~--v~~I~~~aF~~c~-~L~~i~lp~~-l~~I~~~aF~--- 363 (394)
T 4fs7_A 295 GCSSLTEVKLLDSVKFIGEEA----FESCTSLVSIDLPYL--VEEIGKRSFRGCT-SLSNINFPLS-LRKIGANAFQ--- 363 (394)
T ss_dssp TCTTCCEEEECTTCCEECTTT----TTTCTTCCEECCCTT--CCEECTTTTTTCT-TCCEECCCTT-CCEECTTTBT---
T ss_pred ccccccccccccccceechhh----hcCCCCCCEEEeCCc--ccEEhHHhccCCC-CCCEEEECcc-ccEehHHHhh---
Confidence 6777888887665 344332 336888888888532 3332 23345677 8888888765 6655666664
Q ss_pred ccCCcCCCCCCCC
Q 021667 266 CWSSVEDYPSGIS 278 (309)
Q Consensus 266 c~~~~~l~~~~~s 278 (309)
++..|..+++.
T Consensus 364 --~C~~L~~i~lp 374 (394)
T 4fs7_A 364 --GCINLKKVELP 374 (394)
T ss_dssp --TCTTCCEEEEE
T ss_pred --CCCCCCEEEEC
Confidence 44455555553
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=82.73 E-value=0.56 Score=40.09 Aligned_cols=79 Identities=11% Similarity=0.180 Sum_probs=49.2
Q ss_pred cCCCCcEEEecCC--ccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhc
Q 021667 189 NMHGLRHLQLFGN--ELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFC 266 (309)
Q Consensus 189 ~~~~L~~L~l~~~--~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c 266 (309)
.+.+|+.+.+... .+... .+.+|.+|+.+.+.++....-.......|. +|+.+.|+.+ ++..+..+|.
T Consensus 261 ~~~~l~~i~l~~~i~~i~~~----aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~-~L~~i~lp~~-l~~I~~~aF~---- 330 (379)
T 4h09_A 261 NCTALKTLNFYAKVKTVPYL----LCSGCSNLTKVVMDNSAIETLEPRVFMDCV-KLSSVTLPTA-LKTIQVYAFK---- 330 (379)
T ss_dssp TCTTCCEEEECCCCSEECTT----TTTTCTTCCEEEECCTTCCEECTTTTTTCT-TCCEEECCTT-CCEECTTTTT----
T ss_pred eeehhccccccccceecccc----ccccccccccccccccccceehhhhhcCCC-CCCEEEcCcc-ccEEHHHHhh----
Confidence 6777888887654 33322 234788999998865432221224456788 8999999753 6666666664
Q ss_pred cCCcCCCCCCCC
Q 021667 267 WSSVEDYPSGIS 278 (309)
Q Consensus 267 ~~~~~l~~~~~s 278 (309)
++..|.++.+.
T Consensus 331 -~C~~L~~i~ip 341 (379)
T 4h09_A 331 -NCKALSTISYP 341 (379)
T ss_dssp -TCTTCCCCCCC
T ss_pred -CCCCCCEEEEC
Confidence 44456666653
No 167
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=82.63 E-value=0.42 Score=41.27 Aligned_cols=78 Identities=15% Similarity=0.207 Sum_probs=50.6
Q ss_pred cCCCCcEEEecCC--ccChHHHHHHHHhCCCCCeeecCCCCCcCch-hHHHHHhHhccCceecCCCCCCchhhhhhhhhh
Q 021667 189 NMHGLRHLQLFGN--ELTNVGLQAILDACPHLESLDLRQCFNVNLV-GKLGKICAERIRDLRHPNDSTHDYEFGADFQDF 265 (309)
Q Consensus 189 ~~~~L~~L~l~~~--~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~-~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~ 265 (309)
.|++|+.+.+... .+.+.. +.+|.+|+.+.|... ++.+ ......|. +|+++.|+.+ ++..|-.+|.
T Consensus 286 ~c~~L~~i~l~~~i~~I~~~a----F~~c~~L~~i~lp~~--v~~I~~~aF~~C~-~L~~i~ip~s-v~~I~~~aF~--- 354 (394)
T 4gt6_A 286 NCPALQDIEFSSRITELPESV----FAGCISLKSIDIPEG--ITQILDDAFAGCE-QLERIAIPSS-VTKIPESAFS--- 354 (394)
T ss_dssp TCTTCCEEECCTTCCEECTTT----TTTCTTCCEEECCTT--CCEECTTTTTTCT-TCCEEEECTT-CCBCCGGGGT---
T ss_pred cccccccccCCCcccccCcee----ecCCCCcCEEEeCCc--ccEehHhHhhCCC-CCCEEEECcc-cCEEhHhHhh---
Confidence 6788888888654 444432 347889999988642 3332 23445678 8999999753 6666677775
Q ss_pred ccCCcCCCCCCCCc
Q 021667 266 CWSSVEDYPSGISD 279 (309)
Q Consensus 266 c~~~~~l~~~~~s~ 279 (309)
++..|..+++.+
T Consensus 355 --~C~~L~~i~~~~ 366 (394)
T 4gt6_A 355 --NCTALNNIEYSG 366 (394)
T ss_dssp --TCTTCCEEEESS
T ss_pred --CCCCCCEEEECC
Confidence 445566555543
No 168
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=78.35 E-value=1.6 Score=31.08 Aligned_cols=36 Identities=33% Similarity=0.345 Sum_probs=18.9
Q ss_pred CCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCC
Q 021667 192 GLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFN 228 (309)
Q Consensus 192 ~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~ 228 (309)
+|++|+|++|.|+.-.- ..+..+++|+.|+|.+++.
T Consensus 32 ~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCe
Confidence 56777777765542111 1223455666666666543
No 169
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=72.60 E-value=0.52 Score=40.67 Aligned_cols=80 Identities=15% Similarity=0.243 Sum_probs=50.9
Q ss_pred hcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCC--ccChHHHHHHHHhCCCCCeeecCCCCCcCch-h
Q 021667 157 SLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGN--ELTNVGLQAILDACPHLESLDLRQCFNVNLV-G 233 (309)
Q Consensus 157 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~--~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~-~ 233 (309)
..|.+|+.+.+... .. .-+-.++. .|.+|+.+.|..+ .|.+.. +.+|.+|+.+.+... ++.+ .
T Consensus 294 ~~~~~L~~i~l~~~-i~------~I~~~aF~-~c~~L~~i~lp~~v~~I~~~a----F~~c~~L~~i~lp~~--l~~I~~ 359 (394)
T 4fs7_A 294 YGCSSLTEVKLLDS-VK------FIGEEAFE-SCTSLVSIDLPYLVEEIGKRS----FRGCTSLSNINFPLS--LRKIGA 359 (394)
T ss_dssp TTCTTCCEEEECTT-CC------EECTTTTT-TCTTCCEECCCTTCCEECTTT----TTTCTTCCEECCCTT--CCEECT
T ss_pred cccccccccccccc-cc------eechhhhc-CCCCCCEEEeCCcccEEhHHh----ccCCCCCCEEEECcc--ccEehH
Confidence 45677888777531 10 11111233 7899999999765 454433 347999999999653 3332 2
Q ss_pred HHHHHhHhccCceecCCC
Q 021667 234 KLGKICAERIRDLRHPND 251 (309)
Q Consensus 234 ~l~~~~~~~L~~L~l~~~ 251 (309)
.....|. +|+++.++.+
T Consensus 360 ~aF~~C~-~L~~i~lp~~ 376 (394)
T 4fs7_A 360 NAFQGCI-NLKKVELPKR 376 (394)
T ss_dssp TTBTTCT-TCCEEEEEGG
T ss_pred HHhhCCC-CCCEEEECCC
Confidence 4456788 9999999764
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=63.44 E-value=2.9 Score=29.69 Aligned_cols=14 Identities=29% Similarity=0.309 Sum_probs=8.5
Q ss_pred cCCCCcEEEecCCc
Q 021667 189 NMHGLRHLQLFGNE 202 (309)
Q Consensus 189 ~~~~L~~L~l~~~~ 202 (309)
.+++|+.|.|.+|.
T Consensus 53 ~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 53 ALPALRTAHLGANP 66 (130)
T ss_dssp GCTTCCEEECCSSC
T ss_pred hccccCEEEecCCC
Confidence 45566666666663
No 171
>3e1k_B Lactose regulatory protein LAC9; transctiption, repressor, trans-activation, carbohydrate metabolism, DNA-binding, galactose metabolism; 3.00A {Kluyveromyces lactis}
Probab=50.23 E-value=1.4 Score=19.85 Aligned_cols=11 Identities=36% Similarity=0.881 Sum_probs=7.6
Q ss_pred CCCCcccccCC
Q 021667 299 YDFDYDYLFND 309 (309)
Q Consensus 299 ~~~~~~~~~~~ 309 (309)
.|+-|.|+|+|
T Consensus 10 mddvynylfd~ 20 (22)
T 3e1k_B 10 MDDVYNYIFDN 20 (26)
T ss_pred HHHHHHHhccC
Confidence 44578888875
No 172
>3bts_E Regulatory protein GAL4; eukaryotic transcription complex, NAD, rossmann fold, acetylation, carbohydrate metabolism, DNA-binding; HET: NAD; 2.70A {Saccharomyces cerevisiae}
Probab=45.64 E-value=1.3 Score=20.87 Aligned_cols=11 Identities=55% Similarity=0.993 Sum_probs=7.3
Q ss_pred CCCCcccccCC
Q 021667 299 YDFDYDYLFND 309 (309)
Q Consensus 299 ~~~~~~~~~~~ 309 (309)
.|+-|.|+|+|
T Consensus 8 MDDvyNylFdd 18 (26)
T 3bts_E 8 MDDVYNYLFDD 18 (26)
T ss_pred HHHHHHHhcCc
Confidence 34567788875
No 173
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=20.12 E-value=38 Score=22.48 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=16.6
Q ss_pred cCCCCcEEEecCC--ccChHHHHHHHHhCCCCCeeecCC
Q 021667 189 NMHGLRHLQLFGN--ELTNVGLQAILDACPHLESLDLRQ 225 (309)
Q Consensus 189 ~~~~L~~L~l~~~--~i~~~~l~~l~~~~~~L~~L~l~~ 225 (309)
.|.+|+.+.|..+ .|.+..+ .+|.+|+.+.+.+
T Consensus 18 ~c~~L~~i~iP~~v~~Ig~~aF----~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 18 GNTVIREITVQPNIGLLYDGMF----SGCTALEKLILTG 52 (100)
T ss_dssp TCTTCCCEEECTTSSCCCTTSS----TTCTTCCCEEECC
T ss_pred CCCCCcEEEcCCchheEcHHHH----hccCCccEEEEcC
Confidence 4555666665544 3443322 2455666555543
Done!