BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021668
(309 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KRA|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRA|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRC|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRC|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRF|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRF|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRO|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRO|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRP|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3KRP|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3OAB|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAB|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
Length = 295
Score = 201 bits (512), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 117/296 (39%), Positives = 168/296 (56%), Gaps = 53/296 (17%)
Query: 61 IQIDEYMTLKAKKINKALFEGAAVPL--------ILQYPTLPNHEGERVHGTLCIASCEL 112
D YM KAK +NKAL AAV + ++Y L G+RV LCIA+CEL
Sbjct: 2 FDFDGYMLRKAKSVNKAL--EAAVQMKEPLKIHESMRYSLLAG--GKRVRPMLCIAACEL 57
Query: 113 VGGNESSVMPLACAAEMLVTLAL--------------------------------NRALL 140
VGG+ES+ MP ACA EM+ T++L ALL
Sbjct: 58 VGGDESTAMPAACAVEMIHTMSLMHDDLPCMDNDDLRRGKPTNHMAFGESVAVLAGDALL 117
Query: 141 CYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKG-KDVSLSELDFIK 199
+A EH+A TK P+R+VR +GE++ ++G+ G++AG+++++ S+G +V L L+FI
Sbjct: 118 SFAFEHVAAATKGAPPERIVRVLGELAVSIGSEGLVAGQVVDVCSEGMAEVGLDHLEFIH 177
Query: 200 RLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGD-- 257
+ L++ SVV G ++GGG EE++ KLRK+ C+GL +QV DDILD K KE G
Sbjct: 178 HHKTAALLQGSVVLGAILGGGKEEEVAKLRKFANCIGLLFQVVDDILDVTKSSKELGKTA 237
Query: 258 ------DEATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHLADFLVSR 307
D+ TYPKL+GV +K +A L EA ++L +F P RAAPL LA+++ R
Sbjct: 238 GKDLVADKTTYPKLIGVEKSKEFADRLNREAQEQLLHFHPHRAAPLIALANYIAYR 293
>pdb|2J1O|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba
Length = 268
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 114/265 (43%), Positives = 164/265 (61%), Gaps = 37/265 (13%)
Query: 66 YMTLKAKKINKALFEGAAVPL--------ILQYPTLPNHEGERVHGTLCIASCELVGGNE 117
Y+ KA +NKAL +AVPL ++Y L G+RV LCIA+CELVGG E
Sbjct: 16 YIIRKADSVNKAL--DSAVPLREPLKIHEAMRYSLLAG--GKRVRPVLCIAACELVGGEE 71
Query: 118 SSVMPLACAAEMLVTLAL--------------NRALLCYAVEHMATKTKN-VSPDRLVRA 162
S MP ACA EM+ T++L ALL +A EH+A+ T + VSP R+VRA
Sbjct: 72 SLAMPAACAVEMIHTMSLIHDDVYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRA 131
Query: 163 IGEISSAVGTRGVLAGRIMEINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSE 222
+GE++ A+GT G++AG++++I+ +V L L FI + L+EAS V G +IGGGS+
Sbjct: 132 VGELAKAIGTEGLVAGQVVDIS----NVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSD 187
Query: 223 EDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGDDEATYPKLMGVAGAKRYAKELVAEA 282
E+IE+LRK+ +C+GL +QV DDILD D+ TYPKLMG+ ++ +A++L EA
Sbjct: 188 EEIERLRKFARCIGLLFQVVDDILDVTIA------DKLTYPKLMGLEKSREFAEKLNTEA 241
Query: 283 NQELAYFDPTRAAPLYHLADFLVSR 307
+L FD + APL LA+++ +R
Sbjct: 242 RDQLLGFDSDKVAPLLALANYIANR 266
>pdb|2J1P|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In
Complex With Ggpp
pdb|2J1P|B Chain B, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In
Complex With Ggpp
Length = 293
Score = 186 bits (472), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 115/287 (40%), Positives = 162/287 (56%), Gaps = 54/287 (18%)
Query: 66 YMTLKAKKINKALFEGAAVPL--------ILQYPTLPNHEGERVHGTLCIASCELVGGNE 117
Y+ KA +NKAL +AVPL +Y L G+RV LCIA+CELVGG E
Sbjct: 16 YIIRKADSVNKAL--DSAVPLREPLKIHEAXRYSLLAG--GKRVRPVLCIAACELVGGEE 71
Query: 118 SSVMPLACAAEMLVTLAL--------------------------------NRALLCYAVE 145
S P ACA E + T +L ALL +A E
Sbjct: 72 SLAXPAACAVEXIHTXSLIHDDLPCXDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFE 131
Query: 146 HMATKTKN-VSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKGKD---VSLSELDFIKRL 201
H+A+ T + VSP R+VRA+GE++ A+GT G++AG++++I+S+G D V L L FI
Sbjct: 132 HLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLH 191
Query: 202 RCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGDDEAT 261
+ L+EAS V G +IGGGS+E+IE+LRK+ +C+GL +QV DDILD K K T
Sbjct: 192 KTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSSK------LT 245
Query: 262 YPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHLADFLVSRH 308
YPKL G+ ++ +A++L EA +L FD + APL LA+++ +R
Sbjct: 246 YPKLXGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYIANRQ 292
>pdb|4F62|A Chain A, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
pdb|4F62|B Chain B, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
Length = 317
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 104/180 (57%), Gaps = 11/180 (6%)
Query: 138 ALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKGKDVSLSELDF 197
AL +A E ++ T + P+ ++ I E+ A G G++ G++++++S+ K++SL+EL+
Sbjct: 117 ALQTFAFELLSNPT-SAQPELAIKLIQELVVASGRNGMITGQMIDLSSENKNISLAELEQ 175
Query: 198 IKRLRCGKLIEASVVCGVLIGGGSE-EDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG 256
+ + G LI+ASV G L G + E + KL Y +GLA+QV DDI+D + G
Sbjct: 176 MHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLG 235
Query: 257 D--------DEATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHLADFLVSRH 308
++ATYPKL+G+ GAK L +A +++ F ++ PL LA++++ R+
Sbjct: 236 KTQFSDAEANKATYPKLLGLDGAKALVVRLHEQAIAQISEFGD-KSQPLTDLANYIIDRN 294
>pdb|1RQI|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
pdb|1RQI|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
Length = 300
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 92/167 (55%), Gaps = 11/167 (6%)
Query: 154 VSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKGKDVSLSELDFIKRLRCGKLIEASVVC 213
VS + I E++SA G G+ G+ ++++++GK V L L+ I R + G LI A+V
Sbjct: 134 VSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRL 193
Query: 214 GVLIGGG-SEEDIEKLRKYGKCVGLAYQVWDDILDNMKK-----KKEAGDDE---ATYPK 264
G L G + L KY + +GLA+QV DDILD + K++ D + +TYP
Sbjct: 194 GALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPA 253
Query: 265 LMGVAGAKRYAKELVAEANQELAYF--DPTRAAPLYHLADFLVSRHK 309
L+G+ A++ A++L+ +A Q L + L LAD+++ R+K
Sbjct: 254 LLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYIIQRNK 300
>pdb|2FOR|A Chain A, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
pdb|2FOR|B Chain B, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
Length = 323
Score = 87.4 bits (215), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 92/167 (55%), Gaps = 11/167 (6%)
Query: 154 VSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKGKDVSLSELDFIKRLRCGKLIEASVVC 213
VS + I E++SA G G+ G+ ++++++GK V L L+ I R + G LI A+V
Sbjct: 157 VSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRL 216
Query: 214 GVLIGGG-SEEDIEKLRKYGKCVGLAYQVWDDILDNMKK-----KKEAGDDE---ATYPK 264
G L G + L KY + +GLA+QV DDILD + K++ D + +TYP
Sbjct: 217 GALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPA 276
Query: 265 LMGVAGAKRYAKELVAEANQELAYF--DPTRAAPLYHLADFLVSRHK 309
L+G+ A++ A++L+ +A Q L + L LAD+++ R+K
Sbjct: 277 LLGLEQARKKARDLIDDARQALKQLAEQSLDTSALEALADYIIQRNK 323
>pdb|1RQJ|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
pdb|1RQJ|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
Length = 299
Score = 87.4 bits (215), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 92/167 (55%), Gaps = 11/167 (6%)
Query: 154 VSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKGKDVSLSELDFIKRLRCGKLIEASVVC 213
VS + I E++SA G G+ G+ ++++++GK V L L+ I R + G LI A+V
Sbjct: 133 VSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRL 192
Query: 214 GVLIGGG-SEEDIEKLRKYGKCVGLAYQVWDDILDNMKK-----KKEAGDDE---ATYPK 264
G L G + L KY + +GLA+QV DDILD + K++ D + +TYP
Sbjct: 193 GALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPA 252
Query: 265 LMGVAGAKRYAKELVAEANQELAYF--DPTRAAPLYHLADFLVSRHK 309
L+G+ A++ A++L+ +A Q L + L LAD+++ R+K
Sbjct: 253 LLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYIIQRNK 299
>pdb|3P41|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Pseudomonas Fluorescens Pf-5 Complexed With Magnesium
And Isoprenyl Pyrophosphate
Length = 303
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 118/252 (46%), Gaps = 43/252 (17%)
Query: 98 GERVHGTLCIASCELVGGNESSVMPLACAAEMLVTL------------------------ 133
G+RV L A+CE +GG ACA E++
Sbjct: 51 GKRVRPLLAYAACEALGGKPEQANGAACAVELIHAYSLVHDDLPAXDDDDLRRGQPTTHK 110
Query: 134 ALNRALLCYAVEHMAT---------KTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEIN 184
A + A A + + + + S + +R + ++ A G G + G+ +++
Sbjct: 111 AFDEAXAILAGDGLQSLAFSALLDPALSDASAEIRLRXVTTLAQAAGPAGXVGGQAIDLG 170
Query: 185 SKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEE-DIEKLRKYGKCVGLAYQVWD 243
S G + L++ R + G LIEASV+ G L G +E+ +++ L+ Y + +GLA+QV D
Sbjct: 171 SVGLKLDQQALEYXHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQD 230
Query: 244 DILD------NMKKKKEA--GDDEATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAA 295
DILD + K++ A D+ TYP L+G+A AK YA EL +A L FD A
Sbjct: 231 DILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRDQALHALRPFDAA-AE 289
Query: 296 PLYHLADFLVSR 307
PL LA ++V R
Sbjct: 290 PLRELARYIVER 301
>pdb|3LJI|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From
Pseudomonas Fluorescens Pf-5
pdb|3LSN|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From
Pseudomonas Fluorescens Pf-5 Complexed With Magnesium
Length = 304
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 118/252 (46%), Gaps = 43/252 (17%)
Query: 98 GERVHGTLCIASCELVGGNESSVMPLACAAEMLVTL------------------------ 133
G+RV L A+CE +GG ACA E++
Sbjct: 44 GKRVRPLLAYAACEALGGKPEQANGAACAVELIHAYSLVHDDLPAXDDDDLRRGQPTTHK 103
Query: 134 ALNRALLCYAVEHMAT---------KTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEIN 184
A + A A + + + + S + +R + ++ A G G + G+ +++
Sbjct: 104 AFDEACAILAGDGLQSLAFSALLDPALSDASAEIRLRXVTTLAQAAGPAGXVGGQAIDLG 163
Query: 185 SKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEE-DIEKLRKYGKCVGLAYQVWD 243
S G + L++ R + G LIEASV+ G L G +E+ +++ L+ Y + +GLA+QV D
Sbjct: 164 SVGLKLDQQALEYXHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQD 223
Query: 244 DILD------NMKKKKEA--GDDEATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAA 295
DILD + K++ A D+ TYP L+G+A AK YA EL +A L FD A
Sbjct: 224 DILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRDQALHALRPFDAA-AE 282
Query: 296 PLYHLADFLVSR 307
PL LA ++V R
Sbjct: 283 PLRELARYIVER 294
>pdb|3TS7|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase (Target
Efi-501951) From Methylococcus Capsulatus
pdb|3TS7|B Chain B, Crystal Structure Of Farnesyl Diphosphate Synthase (Target
Efi-501951) From Methylococcus Capsulatus
Length = 324
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 82/155 (52%), Gaps = 10/155 (6%)
Query: 163 IGEISSAVGTRGVLAGRIMEINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIGGG-S 221
I ++ A G G++ G+ +++ S GK + L L+ + + G LI ASV L G
Sbjct: 148 IETLAKASGPAGMVGGQAIDLASVGKKLDLPGLENMHIRKTGALIRASVRLACLARPGLP 207
Query: 222 EEDIEKLRKYGKCVGLAYQVWDDILD--------NMKKKKEAGDDEATYPKLMGVAGAKR 273
E ++L Y KC+GLA+Q+ DDILD + K+ ++ YP L+G++GAK
Sbjct: 208 AEQFDRLDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKE 267
Query: 274 YAKELVAEANQELAYFDPTRAAPLYHLADFLVSRH 308
A+E+ A + LA F P A L LA F++ R
Sbjct: 268 KAEEMHEAALESLAGFGP-EADLLRELARFIIQRQ 301
>pdb|3UCA|A Chain A, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
pdb|3UCA|B Chain B, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
Length = 324
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 66/98 (67%), Gaps = 1/98 (1%)
Query: 160 VRAIGEISSAVGTRGVLAGRIMEI-NSKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIG 218
++A I+ A G+ G++ G+I++I N +++SL ELD++ + G+LI+AS++ G ++
Sbjct: 167 LKATKIIADAAGSDGMIGGQIVDIINEDKEEISLKELDYMHLKKTGELIKASIMSGAVLA 226
Query: 219 GGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG 256
SE DI+KL +G +GLA+Q+ DDILD + K+ G
Sbjct: 227 EASEGDIKKLEGFGYKLGLAFQIKDDILDVVGNAKDLG 264
>pdb|3P8L|A Chain A, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
pdb|3P8L|B Chain B, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
Length = 302
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 73/127 (57%), Gaps = 8/127 (6%)
Query: 165 EISSAVGTRGVLAGRIMEINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEED 224
+++ A G +G+++G++ +I + ++L EL + + G LIE +++ G ++ +EE
Sbjct: 148 QLAKAAGNQGMVSGQMGDIEGEKVSLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEV 207
Query: 225 IEKLRKYGKCVGLAYQVWDDILDNMKKK----KEAGDDEA----TYPKLMGVAGAKRYAK 276
I L ++ GLA+Q+ DD+LD + K+ G DEA TYP L+G+AGAK
Sbjct: 208 IGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALT 267
Query: 277 ELVAEAN 283
+AE +
Sbjct: 268 HQLAEGS 274
>pdb|3OAB|B Chain B, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAB|C Chain C, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|B Chain B, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|C Chain C, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
Length = 264
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 24/153 (15%)
Query: 104 TLCIASCELVGGNESS----------VMPLACAAEML-----------VTLALNRALLCY 142
TLC+A+CELVGG+ S V A E L V L ++ +
Sbjct: 46 TLCLAACELVGGDRSQAMAAAAAIHLVHAAAYVHEHLPPAIQHKYGPNVELLTGDGIVPF 105
Query: 143 AVEHMATKT---KNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKGKDVSLSELDFIK 199
E +A + PDR++R I EIS A G G+++G E + SL ++++
Sbjct: 106 GFELLAGSVDPARTDDPDRILRVIIEISRAGGPEGMISGLHREEEIVDGNTSLDFIEYVC 165
Query: 200 RLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYG 232
+ + G++ CG ++GG +EE+I+KLR +G
Sbjct: 166 KKKYGEMHACGAACGAILGGAAEEEIQKLRNFG 198
>pdb|3Q1O|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|B Chain B, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|C Chain C, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|D Chain D, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
Length = 310
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 81/146 (55%), Gaps = 9/146 (6%)
Query: 159 LVRAIGEISSAVGTRGVLAGRIMEINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIG 218
+V I +S+ G +G++ G+ ++ + ++L +L F+ + KLI AS++ G++
Sbjct: 152 IVELIKILSANGGIKGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVAS 211
Query: 219 GGSEEDIEK-LRKYGKCVGLAYQVWDDILDNMKKKKEAGD----DEA--TYPKLMGVAGA 271
G +E++ K L+ +G +GL +QV DDI+D + ++E+G D A ++ L+G+ A
Sbjct: 212 GIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERA 271
Query: 272 KRYAKELVAEANQELAYFDPTRAAPL 297
YA+ L E +L P A PL
Sbjct: 272 NNYAQTLKTEVLNDLDALKP--AYPL 295
>pdb|3LLW|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|B Chain B, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|C Chain C, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|D Chain D, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
Length = 311
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 81/146 (55%), Gaps = 9/146 (6%)
Query: 159 LVRAIGEISSAVGTRGVLAGRIMEINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIG 218
+V I +S+ G +G++ G+ ++ + ++L +L F+ + KLI AS++ G++
Sbjct: 145 IVELIKILSANGGIKGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVAS 204
Query: 219 GGSEEDIEK-LRKYGKCVGLAYQVWDDILDNMKKKKEAGD----DEA--TYPKLMGVAGA 271
G +E++ K L+ +G +GL +QV DDI+D + ++E+G D A ++ L+G+ A
Sbjct: 205 GIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERA 264
Query: 272 KRYAKELVAEANQELAYFDPTRAAPL 297
YA+ L E +L P A PL
Sbjct: 265 NNYAQTLKTEVLNDLDALKP--AYPL 288
>pdb|3M9U|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|C Chain C, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|D Chain D, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3PDE|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|C Chain C, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|D Chain D, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
Length = 309
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 79/153 (51%), Gaps = 13/153 (8%)
Query: 130 LVTLALNRALLCYAVEHM-ATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKGK 188
+ TLA LL A + + AT LV+A+ ++A G G++AG+ +I S+
Sbjct: 115 MATLA-GDGLLTLAFQWLTATDLPATMQAALVQAL---ATAAGPSGMVAGQAKDIQSEHV 170
Query: 189 DVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILD- 247
++ LS+L + + + G L+ +V G+++G E ++ GLA+Q++DDILD
Sbjct: 171 NLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDV 230
Query: 248 -----NMKKKKEAGDDEA--TYPKLMGVAGAKR 273
M K + DEA TYP +G+ GA +
Sbjct: 231 VSSPAEMGKATQKDADEAKNTYPGKLGLIGANQ 263
>pdb|3P8R|A Chain A, Crystal Structure Of Polyprenyl Synthase From Vibrio
Cholerae
Length = 302
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 67/119 (56%), Gaps = 9/119 (7%)
Query: 166 ISSAVGTRGVLAGRIMEINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIGG-GSEED 224
++ A G +G+ G+ +++ ++ + +SL EL+ I R + G L+ ++ G L G
Sbjct: 151 LAEASGAQGMCLGQALDLAAENRLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAM 210
Query: 225 IEKLRKYGKCVGLAYQVWDDILDNMKK-----KKEAGDDE---ATYPKLMGVAGAKRYA 275
+ L +Y + VGLA+QV DDILD + K + D E +TYP L+G+ GA++ A
Sbjct: 211 LPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKA 269
>pdb|3KRA|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRA|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRC|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRC|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRF|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRF|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRO|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRO|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRP|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3KRP|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
Length = 274
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 34/163 (20%)
Query: 104 TLCIASCELVGGNESSV-------------------MPLACAAEML------------VT 132
TLC+A+CELVGG+ S +PL + + V
Sbjct: 46 TLCLAACELVGGDRSQAMAAAAAIHLVHAAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVE 105
Query: 133 LALNRALLCYAVEHMATKT---KNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKGKD 189
L ++ + E +A + PDR++R I EIS A G G+++G E +
Sbjct: 106 LLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPEGMISGLHREEEIVDGN 165
Query: 190 VSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYG 232
SL ++++ + + G++ CG ++GG +EE+I+KLR +G
Sbjct: 166 TSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFG 208
>pdb|3QKC|B Chain B, Crystal Structure Of Geranyl Diphosphate Synthase Small
Subunit From Antirrhinum Majus
pdb|3QKC|A Chain A, Crystal Structure Of Geranyl Diphosphate Synthase Small
Subunit From Antirrhinum Majus
Length = 273
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 36/165 (21%)
Query: 105 LCIASCELVGGNESSVMPLACAAEML-----------------------------VTLAL 135
LC+A+CELVGG+ S M A A ++ + L
Sbjct: 52 LCVAACELVGGDRSDAMAAAAAVHLMHVAAYTHENLPLTDGPMSKSEIQHKFDPNIELLT 111
Query: 136 NRALLCYAVEHMATK---TKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEIN-SKGKDVS 191
++ + +E MA T+N +PDR++RAI E++ +G+ G++ G+ E+ ++ D+
Sbjct: 112 GDGIIPFGLELMARSMDPTRN-NPDRILRAIIELTRVMGSEGIVEGQYHELGLNQLNDLE 170
Query: 192 LSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVG 236
L ++++ + + G L CG ++GG E+ IEKLR++G VG
Sbjct: 171 L--IEYVCKKKEGTLHACGAACGAILGGCDEDKIEKLRRFGLYVG 213
>pdb|1RTR|A Chain A, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
pdb|1RTR|B Chain B, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
Length = 301
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 21/187 (11%)
Query: 138 ALLCYAVEHMATKTKNVSPDRL-----VRAIGEISSAVGTRGVLAGRIMEINSKGKDVSL 192
ALL A E ++ S DRL ++ + +S A G G++ G+++++ S+G+ + L
Sbjct: 114 ALLTKAFELIS------SDDRLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQSEGQPIDL 167
Query: 193 SELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDIL----DN 248
L+ I + + G L+ +V+ I + E L Y +G+ +Q+ DD+L D
Sbjct: 168 ETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDE 227
Query: 249 MKKKKEAGDD----EATYPKLMGVAGAKRYAKELVAEANQELAYFDPT-RAAPLYHLADF 303
K K+ G D ++TY L+G GA+ A EL D L + D
Sbjct: 228 AKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTYHRDAAVDELTQIDEQFNTKHLLEIVDL 287
Query: 304 LVSR-HK 309
SR HK
Sbjct: 288 FYSRDHK 294
>pdb|1WY0|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate
Synthetase From Pyrococcus Horikoshii Ot3
Length = 342
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 93/219 (42%), Gaps = 33/219 (15%)
Query: 70 KAKKINKALFE--GAAVPLILQYPT--LPNHEGERVHGTLCIASCELVGGNESSVMPLAC 125
KAK I++ +FE P +L P G+RV + + S E VGG+ + A
Sbjct: 14 KAKLIDEKIFELIPEKDPRVLYEAARHYPLAGGKRVRPFVVLTSTEAVGGDPLRAIYPAV 73
Query: 126 AAEML----------------------------VTLALNRALLCYAVEHMATKTKNVSPD 157
A E++ V +A+ L ++ A + P+
Sbjct: 74 AIELIHNYSLVHDDIMDMDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVARAEIPPE 133
Query: 158 RLVRAIGEISSAVGTRGVLAGRIMEINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVLI 217
+ R + I A R +E K V++ E + + G L EAS G +I
Sbjct: 134 KKARVLEVIVKASNELCEGQARDLEFEKKST-VTIEEYMEMISGKTGALFEASAKVGGII 192
Query: 218 GGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG 256
G +EE I+ L +G+ VG+A+Q+WDD+LD + +K+ G
Sbjct: 193 GTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKLG 231
>pdb|3NPK|A Chain A, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
pdb|3NPK|B Chain B, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
Length = 291
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 89/179 (49%), Gaps = 14/179 (7%)
Query: 129 MLVTLALN-RALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKG 187
+LV ALN A L + H+ + K ++ I ++ G G + G+ ++ +
Sbjct: 107 ILVGDALNTEAFLVLSHAHLKDEIK-------IKLIKTLAFNAGLNGXVIGQAIDCFFED 159
Query: 188 KDVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILD 247
K +SL+EL+F+ + +LI A++ G I + E+ ++ K G +GL +Q+ DDI+D
Sbjct: 160 KRLSLNELEFLHTHKTARLIAAALKXGCEICELNNEESNQIYKLGLKLGLIFQINDDIID 219
Query: 248 NMKKKKEAGD------DEATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHL 300
++++G + ++ L+G+ A + + L+ E Q+L + A + +L
Sbjct: 220 VTTSQEQSGKPTNNDIHKNSFVNLLGLEQAIKTKENLLNECEQDLEKLNEKLAQXIQNL 278
>pdb|3LVS|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
pdb|3LVS|B Chain B, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
Length = 298
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 63/118 (53%), Gaps = 15/118 (12%)
Query: 171 GTRGVLAGRIMEINSKGKDVSLSELDFIKRLRCGK---LIEASVVCGVLIGGGSEEDIEK 227
G G++ G+ ++I ++ V L+ LD I RL+ GK LI + G ++ G D
Sbjct: 146 GAEGMVYGQALDIAAETAAVPLT-LDEIIRLQAGKTGALISFAAQAGAILAGA---DRGP 201
Query: 228 LRKYGKCVGLAYQVWDDILDNMKKKKEAG-----DDEA---TYPKLMGVAGAKRYAKE 277
L Y +GLA+Q+ DDILD ++ AG D EA T+ L+G+AGAK A +
Sbjct: 202 LTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAAD 259
>pdb|2H8O|A Chain A, The 1.6a Crystal Structure Of The Geranyltransferase From
Agrobacterium Tumefaciens
Length = 335
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 9/118 (7%)
Query: 198 IKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILD------NMKK 251
++ ++ G L+ + G +I G ++ + ++LR +G+ +GL++Q+ DD+LD M K
Sbjct: 217 LQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADAATMGK 276
Query: 252 K--KEAGDDEATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHLADFLVSR 307
K+A + T L G A A+ +E VAEA++ LA + +AA L A F+ R
Sbjct: 277 ATGKDAARGKGTLVALRGEAWAREKLQEQVAEASELLAPYGE-KAAILIAAARFIAER 333
>pdb|3M0G|A Chain A, Crystal Structure Of Putative Farnesyl Diphosphate
Synthase From Rhodobacter Capsulatus
pdb|3M0G|B Chain B, Crystal Structure Of Putative Farnesyl Diphosphate
Synthase From Rhodobacter Capsulatus
Length = 297
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 62/118 (52%), Gaps = 15/118 (12%)
Query: 171 GTRGVLAGRIMEINSKGKDVSLSELDFIKRLRCGK---LIEASVVCGVLIGGGSEEDIEK 227
G G + G+ ++I ++ V L+ LD I RL+ GK LI + G ++ G D
Sbjct: 145 GAEGXVYGQALDIAAETAAVPLT-LDEIIRLQAGKTGALISFAAQAGAILAGA---DRGP 200
Query: 228 LRKYGKCVGLAYQVWDDILDNMKKKKEAG-----DDEA---TYPKLMGVAGAKRYAKE 277
L Y +GLA+Q+ DDILD ++ AG D EA T+ L+G+AGAK A +
Sbjct: 201 LTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAAD 258
>pdb|3MZV|A Chain A, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
pdb|3MZV|B Chain B, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
Length = 341
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 15/122 (12%)
Query: 178 GRIMEINSKGKDVSLSELDFIKRLR--CGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCV 235
G ++++ + ++++ +E +++ +R L A+ G +IGG E+ ++ L YG +
Sbjct: 154 GEVLQLTA-AQNLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDAL 212
Query: 236 GLAYQVWDDILDNMKKKKE----AGDD----EATYPKLMGVAGA----KRYAKELVAEAN 283
G+A+Q+ DD+LD K E GDD + T P + VA A + + K ++ + +
Sbjct: 213 GIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKLTMPVIKAVALADEAERAFWKRVIEKGD 272
Query: 284 QE 285
Q+
Sbjct: 273 QQ 274
>pdb|3AQB|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQB|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQC|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
pdb|3AQC|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
Length = 325
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 197 FIKRL--RCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKK-- 252
+++R+ + LIEAS G L E+ ++++G C+G++YQ+ DDILD +
Sbjct: 163 YLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEAT 222
Query: 253 --KEAGDD----EATYPKLMGVAGAK 272
K G D TYP + +A K
Sbjct: 223 LGKPVGSDIRNGHITYPLMAAIANLK 248
>pdb|3LOM|A Chain A, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
pdb|3LOM|B Chain B, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
Length = 313
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 9/111 (8%)
Query: 143 AVEHMATKTKNVSPDRLVRAIGEI-SSAVGTRGVLAGRIMEINSKGKD-VSLSELDFIKR 200
A+E + + + P V AI ++ +A G G+++G+ ++++ K V+ +L I
Sbjct: 127 AIEVLLMRLSPLLPAAQVVAITQVLVNASGISGMVSGQSLDLSELAKSSVTEEQLREIHL 186
Query: 201 LRCGKLIEASVVCGVLIGGGSEEDIEK----LRKYGKCVGLAYQVWDDILD 247
L+ GKLI A C ++ E E+ LR YGK +GL +Q+ DD LD
Sbjct: 187 LKTGKLILA---CFEMVLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLD 234
>pdb|3LMD|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Atcc 13032
pdb|3Q2Q|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Calcium
And Isoprenyl Diphosphate
Length = 360
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 198 IKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG 256
+ R + G LI ++ G + G + E I+ L+ +G VG+ +Q+ DDI+D + E+G
Sbjct: 195 VIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSETHESG 253
>pdb|3IPI|A Chain A, Crystal Structure Of A Geranyltranstransferase From The
Methanosarcina Mazei
Length = 295
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 17/142 (11%)
Query: 178 GRIMEINSKGKDVSLSELDFIKRL--RCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCV 235
G ++++ K +D S E D+ K + + L S G GG EE E+ +G +
Sbjct: 142 GEVLDL--KLEDESFGENDYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNAL 199
Query: 236 GLAYQVWDDILDNMK--KKKEAGDDEATYPKLMGVAGAKRYA--------KELVAEANQE 285
G AYQ+ DDIL+ ++ + KE+ T P + + +K A K VA A +
Sbjct: 200 GTAYQIVDDILEFLEVVEGKESKFTSETLPHIYXKSTSKEEALKKSIDCVKLHVAAAKET 259
Query: 286 LAYFD--PTRAAPLYHLADFLV 305
L F P R L+ + D++
Sbjct: 260 LETFRECPAR-DKLFQITDYIT 280
>pdb|3NF2|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Streptomyces Coelicolor A3(2)
Length = 352
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 70/176 (39%), Gaps = 29/176 (16%)
Query: 98 GERVHGTLCIASCELVGGNESSVMPLACAAEMLVTLALNRALLCYAVE---HMATKTKNV 154
G+ V L + S E+ G +P A A E++ +L L E H T K
Sbjct: 54 GKAVRPALAVLSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDLMDGDEQRRHRDTVWKVH 113
Query: 155 SP-------DRLVRAIGEISSAVGTRGVLAGRIME---------INSKGKDVSLSELDFI 198
P D L E+ +GT V AGR I+ + +D+S D +
Sbjct: 114 GPAQAILVGDALFALANEVLLELGT--VEAGRATRRLTKASRSLIDGQAQDISYEHRDRV 171
Query: 199 KRLRC--------GKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDIL 246
C G L+ + G ++GG E + L KYG +GLA+Q DD+L
Sbjct: 172 SVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLL 227
>pdb|3OYR|A Chain A, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
pdb|3OYR|B Chain B, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
Length = 345
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 86/223 (38%), Gaps = 54/223 (24%)
Query: 91 PTLPNH----EGERVHGTLCIASCELVGGNESSVMPLACAAEMLVTLAL----------- 135
P L H G+R+ + +A+ L G + LA A E + T L
Sbjct: 54 PALAEHLIAAGGKRLRPLMTVAAARLAGADNDHFQKLAAAVEFIHTATLLHDDVVDGSQL 113
Query: 136 -------------------NRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVL 176
L A E M + + L RA +R +
Sbjct: 114 RRGKVAAHLIWGGAQSVLVGDFLFARAFELMVETNSMKALEILARA---------SRVIA 164
Query: 177 AGRIMEINSKGKDVSLSELDFIK--RLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKC 234
G ++++ + D++LS+ +++ + + +L A+ G + G E LR YG
Sbjct: 165 EGEVLQL-MRSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLN 223
Query: 235 VGLAYQVWDDILD----NMKKKKEAGDD----EATYPKLMGVA 269
+GLA+Q+ DD LD K AGDD +AT P L+ +A
Sbjct: 224 LGLAFQLADDALDYGGATETLGKNAGDDFREGKATLPLLLAIA 266
>pdb|3LK5|A Chain A, Crystal Structure Of Putative Geranylgeranyl Pyrophosphate
Synthase From Corynebacterium Glutamicum
pdb|3QQV|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Isoprenyl
Diphosphate And Magnesium
Length = 380
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 175 VLAGRIMEINSKGKDVSLSEL-DFIKRLRCGKL-IEASVVCGVLIGGGSEEDIEKLRKYG 232
V+ G++++I + EL D + R + I + G I GGS + I+ L YG
Sbjct: 187 VIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYG 246
Query: 233 KCVGLAYQVWDDIL----DNMKKKKEAGDD 258
+G+A+Q+ DD+L D K AGDD
Sbjct: 247 HDIGIAFQLRDDLLGVFGDPAITGKPAGDD 276
>pdb|4DHD|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis
pdb|4GP1|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp
pdb|4GP2|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
pdb|4GP2|B Chain B, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
Length = 358
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 80/198 (40%), Gaps = 43/198 (21%)
Query: 98 GERVHGTLCIASCELVGGNESSVMPLACAAEMLVTLAL---------------------- 135
G+R+ L +A+ E V G +P A E++ +L
Sbjct: 45 GKRLRPLLTLAAAEAVSGQWRPALPAAAIVELIHNYSLIYDDIIDRGDVRRGLPTVRKAF 104
Query: 136 --NRALLC-----YAVEHMATKTKNVSPDRLVRAIGEISSAV--GTR-GVL---AGRI-- 180
N A+L A+E T P + + E+ A+ G R +L AGR
Sbjct: 105 GDNAAILVGIWYREAIEEAVLDTPK--PTLFAKEVAEVIKAIDEGERLDILFEAAGRSDP 162
Query: 181 MEINSKGKDVSLSELDFIK--RLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLA 238
+ ++ ++V+L D+IK L+ G LI A+ GVL E +G G+A
Sbjct: 163 YFVQARWREVTLD--DYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVA 220
Query: 239 YQVWDDILDNMKKKKEAG 256
+Q+ DD+LD K+ G
Sbjct: 221 FQIIDDVLDIYGDPKKFG 238
>pdb|3PKO|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Citrate
pdb|3PKO|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Citrate
Length = 334
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 175 VLAGRI--MEINSKGKDVSLSELDFIKRL--RCGKLIEASVVCGVLIGGGSEEDIEKLRK 230
+L G + M++N + +D++L ++ + + +L S G + G + I++ R
Sbjct: 155 ILQGELHQMDLNYR-EDITLDA--YLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRD 211
Query: 231 YGKCVGLAYQVWDDILD 247
G +G AYQ+ DDILD
Sbjct: 212 IGIAIGCAYQMLDDILD 228
>pdb|3N3D|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3N3D|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
Length = 335
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 175 VLAGRI--MEINSKGKDVSLSELDFIKRL--RCGKLIEASVVCGVLIGGGSEEDIEKLRK 230
+L G + M++N + +D++L ++ + + +L S G + G + I++ R
Sbjct: 148 ILQGELHQMDLNYR-EDITLDA--YLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRD 204
Query: 231 YGKCVGLAYQVWDDILD 247
G +G AYQ+ DDILD
Sbjct: 205 IGIAIGCAYQMLDDILD 221
>pdb|3APZ|A Chain A, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
pdb|3APZ|B Chain B, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
Length = 348
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 58/150 (38%), Gaps = 39/150 (26%)
Query: 107 IASCELVGGNESSVM------PLACAAEMLVTLALNRALLCYAVEHMATKTKNVSPDRLV 160
+ S +V GN+ SV+ AC A + ALL AVEH+ T
Sbjct: 119 VGSLNVVMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVT----------- 167
Query: 161 RAIGEISSAVGTRGVLAGRIMEINSKGKDVSLSELDFIKR---LRCGKLIEASVVCGVLI 217
G MEI S + +D+ + + LI S ++
Sbjct: 168 -----------------GETMEITSSTE--QRYSMDYYMQKTYYKTASLISNSCKAVAVL 208
Query: 218 GGGSEEDIEKLRKYGKCVGLAYQVWDDILD 247
G + E +YG+ +GLA+Q+ DDILD
Sbjct: 209 TGQTAEVAVLAFEYGRNLGLAFQLIDDILD 238
>pdb|3AQ0|A Chain A, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|B Chain B, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|C Chain C, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|D Chain D, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|E Chain E, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|F Chain F, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|G Chain G, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|H Chain H, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
Length = 348
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 58/150 (38%), Gaps = 39/150 (26%)
Query: 107 IASCELVGGNESSVM------PLACAAEMLVTLALNRALLCYAVEHMATKTKNVSPDRLV 160
+ S +V GN+ SV+ AC A + ALL AVEH+ T
Sbjct: 119 VGSLNVVMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVT----------- 167
Query: 161 RAIGEISSAVGTRGVLAGRIMEINSKGKDVSLSELDFIKR---LRCGKLIEASVVCGVLI 217
G MEI S + +D+ + + LI S ++
Sbjct: 168 -----------------GETMEITSS--TAARYSMDYYMQKTYYKTASLISNSCKAVAVL 208
Query: 218 GGGSEEDIEKLRKYGKCVGLAYQVWDDILD 247
G + E +YG+ +GLA+Q+ DDILD
Sbjct: 209 TGQTAEVAVLAFEYGRNLGLAFQLIDDILD 238
>pdb|2AZJ|A Chain A, Crystal Structure For The Mutant D81c Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
pdb|2AZJ|B Chain B, Crystal Structure For The Mutant D81c Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
Length = 289
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 80/194 (41%), Gaps = 46/194 (23%)
Query: 97 EGERVHGTLCIASCELVGGNESSVMPLACAAEMLVTLALNRALLCYAVEHMATKTKNVSP 156
+G+R GTL + +GG+ A A E+L + +L LC V+ AT+
Sbjct: 48 DGKRFRGTLNMFFTVALGGDIKDSYGGALAIEILHSASLA---LCDIVDLDATRR----- 99
Query: 157 DRLVRAIGEISSAV--GTRGVL---------AGRIME-------INSK---GKDVSLSEL 195
G+ ++ V G R V+ A RI++ +N+ KD S+ L
Sbjct: 100 -------GDKAAWVVYGNRKVIFITNYLIPTALRIIQTSYGDDALNTSIELWKDTSVGAL 152
Query: 196 -------DFIK--RLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDIL 246
D+I+ L+ G L + S V +++ GK +G+ YQV DD +
Sbjct: 153 RDMYDNSDYIRTIELKTGSLFKLSTVLSAY-ASKHYNTKQQMLDVGKYLGIIYQVIDDFV 211
Query: 247 DNMKKKKEAGDDEA 260
D KK E D A
Sbjct: 212 DYKTKKVEEIDGSA 225
>pdb|2AZK|A Chain A, Crystal Structure For The Mutant W136e Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
pdb|2AZK|B Chain B, Crystal Structure For The Mutant W136e Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
Length = 289
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 74/188 (39%), Gaps = 34/188 (18%)
Query: 97 EGERVHGTLCIASCELVGGNESSVMPLACAAEML--VTLALNR-------------ALLC 141
+G+R GTL + +GG+ A A E+L +LAL+ A +
Sbjct: 48 DGKRFRGTLNMFFTVALGGDIKDSYGGALAIEILHSASLALDDIVDLDATRRGDKAAWVV 107
Query: 142 YAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKGKDVSLSEL------ 195
Y + T + P A+ I ++ G + +E KD S+ L
Sbjct: 108 YGNRKVIFITNYLIP----TALRIIQTSYGDDALNTSIELE-----KDTSVGALRDMYDN 158
Query: 196 -DFIK--RLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKK 252
D+I+ L+ G L + S V +++ GK +G+ YQV DD +D KK
Sbjct: 159 SDYIRTIELKTGSLFKLSTVLSAY-ASKHYNTKQQMLDVGKYLGIIYQVIDDFVDYKTKK 217
Query: 253 KEAGDDEA 260
E D A
Sbjct: 218 VEEIDGSA 225
>pdb|3RMG|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
pdb|3RMG|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
Length = 334
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 222 EEDIEKLRKYGKCVGLAYQVWDDILDNMKKKK 253
EE++ R G+ +G+ +Q+ DDI D KK
Sbjct: 193 EEEVAFARLLGEYIGICFQIKDDIFDYFDSKK 224
>pdb|4FP4|A Chain A, Crystal Structure Of Isoprenoid Synthase A3mx09 (Target
Efi-501993) From Pyrobaculum Calidifontis
pdb|4FP4|B Chain B, Crystal Structure Of Isoprenoid Synthase A3mx09 (Target
Efi-501993) From Pyrobaculum Calidifontis
Length = 285
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 194 ELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKK 253
E D + LIEA++V ++I G E IE +K G +G+ YQ DD D ++
Sbjct: 156 ERDKAAEFKTAPLIEAALVMPLVILG-RRELIETAKKLGTKLGILYQYSDDYSDENVERP 214
Query: 254 E 254
E
Sbjct: 215 E 215
>pdb|2AZL|A Chain A, Crystal Structure For The Mutant F117e Of Thermotoga
Maritima Octaprenyl Pyrophosphate Synthase
Length = 299
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 13/110 (11%)
Query: 139 LLCYAVEHMATKTKNVSPDR-LVRAIGEISSAVGTRGVLAGRIMEINSKGKDVSLSELDF 197
L+ + EH + N R + IG++S A ++E S+ K ++ E
Sbjct: 111 LVLVSAEHTVEEIGNNKLRRAFLNVIGKMSEA---------ELIEQLSRYKPITKEEYLR 161
Query: 198 IKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILD 247
I + G L ++ L+ G ED+ L G +G YQ++DDI+D
Sbjct: 162 IVEGKSGALFGLALQLPALLEGELGEDLYNL---GVTIGTIYQMFDDIMD 208
>pdb|2J9R|A Chain A, Thymidine Kinase From B. Anthracis In Complex With Dt
Length = 214
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 11/87 (12%)
Query: 211 VVCGVLIGGGSEEDIEKLRKYGKCVGLAYQ---VWDDILDNMKKKKEAGDDEATYPKLMG 267
V+CG + G SEE I ++R+ A Q V+ +DN +++ K +
Sbjct: 32 VICGSMFSGKSEELIRRVRR----TQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVP 87
Query: 268 VAGAKRYAKELVAE----ANQELAYFD 290
V+ +K K + E A E+ +FD
Sbjct: 88 VSASKDIFKHITEEMDVIAIDEVQFFD 114
>pdb|3P38|A Chain A, Crystal Structure Of The Ns1 Effector Domain W182a Mutant
From Influenza AVIETNAM12032004 (H5N1) VIRUS
pdb|3P38|B Chain B, Crystal Structure Of The Ns1 Effector Domain W182a Mutant
From Influenza AVIETNAM12032004 (H5N1) VIRUS
pdb|3P38|C Chain C, Crystal Structure Of The Ns1 Effector Domain W182a Mutant
From Influenza AVIETNAM12032004 (H5N1) VIRUS
pdb|3P39|A Chain A, Crystal Structure Of The Ns1 Effector Domain W182a Mutant
From Influenza AVIETNAM12032004 (H5N1) VIRUS
pdb|3P39|B Chain B, Crystal Structure Of The Ns1 Effector Domain W182a Mutant
From Influenza AVIETNAM12032004 (H5N1) VIRUS
pdb|3P39|C Chain C, Crystal Structure Of The Ns1 Effector Domain W182a Mutant
From Influenza AVIETNAM12032004 (H5N1) VIRUS
pdb|3P39|D Chain D, Crystal Structure Of The Ns1 Effector Domain W182a Mutant
From Influenza AVIETNAM12032004 (H5N1) VIRUS
pdb|3P39|E Chain E, Crystal Structure Of The Ns1 Effector Domain W182a Mutant
From Influenza AVIETNAM12032004 (H5N1) VIRUS
pdb|3P39|F Chain F, Crystal Structure Of The Ns1 Effector Domain W182a Mutant
From Influenza AVIETNAM12032004 (H5N1) VIRUS
Length = 147
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 80 EGAAVPLILQYPTLPNHEGERVHGTLCIASCELVGGNESS 119
EGA V I P+LP H GE V + + L+GG E++
Sbjct: 80 EGAIVGEISPLPSLPGHTGEDVKNAIGV----LIGGLEAN 115
>pdb|3RRK|A Chain A, Crystal Structure Of The Cytoplasmic N-Terminal Domain Of
Subunit I, Homolog Of Subunit A, Of V-Atpase
Length = 357
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 257 DDEATYPKLMGVAGAKRYAKELVAEANQE-LAYFDPTR 293
DD+ KL+ VAG KR A+EL+AE + + + DP R
Sbjct: 9 DDDDKMEKLI-VAGPKRLARELLAELQKAGVVHIDPLR 45
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,948,233
Number of Sequences: 62578
Number of extensions: 354462
Number of successful extensions: 1082
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1001
Number of HSP's gapped (non-prelim): 77
length of query: 309
length of database: 14,973,337
effective HSP length: 99
effective length of query: 210
effective length of database: 8,778,115
effective search space: 1843404150
effective search space used: 1843404150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)