BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021668
(309 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94ID7|GGPPS_HEVBR Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea
brasiliensis GN=GGPS PE=1 SV=1
Length = 370
Score = 221 bits (563), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 125/318 (39%), Positives = 184/318 (57%), Gaps = 53/318 (16%)
Query: 40 SSLDQAENLTIKSNNNNPFPEIQIDEYMTLKAKKINKALFEGAAVPL--------ILQYP 91
S++ E T++ NNP P YM K IN+AL AA+PL ++Y
Sbjct: 56 SAIITKEEETLQEEQNNPPPSFDFKSYMLQKGNSINQAL--EAAIPLQEPAKIHESMRYS 113
Query: 92 TLPNHEGERVHGTLCIASCELVGGNESSVMPLACAAEMLVTLAL---------------- 135
L G+RV LC+A+CELVGGN+S MP ACA EM+ T++L
Sbjct: 114 LLAG--GKRVRPALCLAACELVGGNDSMAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRG 171
Query: 136 ----------------NRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGR 179
ALL +A EH+A T NVS R+VRA+GE++ A+G G++AG+
Sbjct: 172 KPTNHIVFGEDVAVLAGDALLAFAFEHIAVSTLNVSSARIVRAVGELAKAIGAEGLVAGQ 231
Query: 180 IMEINSKGK-DVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLA 238
+++INS+G +V L +L+FI + KL+E +VV G ++GGG++E++EKLRKY + +GL
Sbjct: 232 VVDINSEGSSEVDLEKLEFIHIHKTAKLLEGAVVLGAILGGGTDEEVEKLRKYARDIGLL 291
Query: 239 YQVWDDILDNMKKKKEAGD--------DEATYPKLMGVAGAKRYAKELVAEANQELAYFD 290
+QV DDILD K +E G D+ TYPKL+G+ ++ +A++L EA ++LA FD
Sbjct: 292 FQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEKSREFAEKLNKEAQEQLAGFD 351
Query: 291 PTRAAPLYHLADFLVSRH 308
P +AAPL LA+++ R
Sbjct: 352 PEKAAPLIALANYIAHRQ 369
>sp|Q43133|GGPPS_SINAL Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic
OS=Sinapis alba GN=GGPS1 PE=1 SV=1
Length = 366
Score = 205 bits (521), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 138/369 (37%), Positives = 197/369 (53%), Gaps = 65/369 (17%)
Query: 1 MASALMTSSMNTPLHHHSKTPLGKPKVAPNPK------ASHVPKSS-SLDQAENLTIKSN 53
MAS++ LHHH T L + + P S PK + S + +L K +
Sbjct: 1 MASSVTPLGSWVLLHHHPSTILTQSRSRSPPSLITLKPISLTPKRTVSSSSSSSLITKED 60
Query: 54 NNNPFPEIQID--EYMTLKAKKINKALFEGAAVPL--------ILQYPTLPNHEGERVHG 103
NN D Y+ KA +NKAL +AVPL ++Y L G+RV
Sbjct: 61 NNLKSSSSSFDFMSYIIRKADSVNKAL--DSAVPLREPLKIHEAMRYSLLAG--GKRVRP 116
Query: 104 TLCIASCELVGGNESSVMPLACAAEMLVTLAL---------------------------- 135
LCIA+CELVGG ES MP CA EM+ T++L
Sbjct: 117 VLCIAACELVGGEESLAMPARCAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDV 176
Query: 136 ----NRALLCYAVEHMATKTKN-VSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKGKD- 189
ALL +A EH+A+ T + VSP R+VRA+GE++ A+GT G++AG++++I+S+G D
Sbjct: 177 AVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDL 236
Query: 190 --VSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILD 247
V L L FI + L+EAS V G +IGGGS+E+IE+LRK+ +C+GL +QV DDILD
Sbjct: 237 NNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILD 296
Query: 248 NMKKKKEAGD--------DEATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYH 299
K +E G D+ TYPKLMG+ ++ +A++L EA +L FD + APL
Sbjct: 297 VTKSSQELGKTAGKDLIADKLTYPKLMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLA 356
Query: 300 LADFLVSRH 308
LA+++ +R
Sbjct: 357 LANYIANRQ 365
>sp|P34802|GGPP1_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit
1, chloroplastic OS=Arabidopsis thaliana GN=GGPPS1 PE=1
SV=2
Length = 371
Score = 201 bits (512), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 173/296 (58%), Gaps = 57/296 (19%)
Query: 66 YMTLKAKKINKALFEGAAVPL--------ILQYPTLPNHEGERVHGTLCIASCELVGGNE 117
Y+ KA+ +NKAL +AVPL ++Y L G+RV LCIA+CELVGG E
Sbjct: 79 YIITKAELVNKAL--DSAVPLREPLKIHEAMRYSLLAG--GKRVRPVLCIAACELVGGEE 134
Query: 118 SSVMPLACAAEMLVTLAL--------------------------------NRALLCYAVE 145
S+ MP ACA EM+ T++L ALL +A E
Sbjct: 135 STAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLSFAFE 194
Query: 146 HMATKTKN--VSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKG---KDVSLSELDFIKR 200
H+A+ T + VSP R+VRA+GE++ A+GT G++AG++++I+S+G DV L L+FI
Sbjct: 195 HLASATSSDVVSPVRVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHL 254
Query: 201 LRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGD--- 257
+ L+EAS V G ++GGGS+++IE+LRK+ +C+GL +QV DDILD K KE G
Sbjct: 255 HKTAALLEASAVLGAIVGGGSDDEIERLRKFARCIGLLFQVVDDILDVTKSSKELGKTAG 314
Query: 258 -----DEATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHLADFLVSRH 308
D+ TYPK+MG+ ++ +A++L EA +L FD + APL LA+++ R
Sbjct: 315 KDLIADKLTYPKIMGLEKSREFAEKLNREARDQLLGFDSDKVAPLLALANYIAYRQ 370
>sp|Q42698|GGPPS_CATRO Geranylgeranyl pyrophosphate synthase, chloroplastic
OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1
Length = 357
Score = 200 bits (509), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 167/289 (57%), Gaps = 49/289 (16%)
Query: 66 YMTLKAKKINKALFEGAAV--PL----ILQYPTLPNHEGERVHGTLCIASCELVGGNESS 119
YM KA +NKAL + V PL ++Y L G+RV LCIA+CEL GG ES
Sbjct: 69 YMIGKANSVNKALEDAVLVREPLKIHESMRYSLLAG--GKRVRPMLCIAACELFGGTESV 126
Query: 120 VMPLACAAEMLVTLAL--------------------------------NRALLCYAVEHM 147
MP ACA EM+ T++L ALL +A EH+
Sbjct: 127 AMPSACAVEMIHTMSLMHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLAFAFEHI 186
Query: 148 ATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKG-KDVSLSELDFIKRLRCGKL 206
AT TK VS +R+VR +GE++ +G+ G++AG+++++ S+G DV L L+FI + L
Sbjct: 187 ATATKGVSSERIVRVVGELAKCIGSEGLVAGQVVDVCSEGIADVGLEHLEFIHIHKTAAL 246
Query: 207 IEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGD--------D 258
+E SVV G ++GG ++E I KLRK+ +C+GL +QV DDILD K +E G D
Sbjct: 247 LEGSVVLGAIVGGANDEQISKLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLVAD 306
Query: 259 EATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHLADFLVSR 307
+ TYPKL+G+ ++ +A++L EA ++LA FDP +AAPL LA+++ R
Sbjct: 307 KVTYPKLLGIDKSREFAEKLNREAQEQLAEFDPEKAAPLIALANYIAYR 355
>sp|Q9ZU77|GGPP7_ARATH Geranylgeranyl pyrophosphate synthase 7, chloroplastic
OS=Arabidopsis thaliana GN=At2g18620 PE=2 SV=1
Length = 347
Score = 195 bits (495), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 114/294 (38%), Positives = 171/294 (58%), Gaps = 56/294 (19%)
Query: 66 YMTLKAKKINKALFEGAAVPL--------ILQYPTLPNHEGERVHGTLCIASCELVGGNE 117
YM KA +N+AL +AV L ++Y L G+RV LCIA+CELVGG E
Sbjct: 58 YMIGKANAVNEAL--DSAVSLREPIKIHEAIRYSLLAR--GKRVRPVLCIAACELVGGEE 113
Query: 118 SSVMPLACAAEMLVTLAL--------------------------------NRALLCYAVE 145
S +P ACA EM+ T++L AL+ +A E
Sbjct: 114 SVALPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALISFAFE 173
Query: 146 HMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKG---KDVSLSELDFIKRLR 202
H+AT T VSP R+VRAIGE++ A+G++G++AG+++++ S G DV L L+FI +
Sbjct: 174 HLATSTA-VSPARVVRAIGELAKAIGSKGLVAGQVVDLTSGGMDQNDVGLEVLEFIHVHK 232
Query: 203 CGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGD----- 257
L+EA+ V G ++GGGS+E++EKLR++ +C+GL +QV DDILD K +E G
Sbjct: 233 TAVLLEAATVLGAIVGGGSDEEVEKLRRFARCIGLLFQVVDDILDVTKSSEELGKTAGKD 292
Query: 258 ---DEATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHLADFLVSRH 308
D+ TYPKLMG+ +K +A +L+++A+++L FD +R PL LA+++ R
Sbjct: 293 LIADKLTYPKLMGLEKSKDFADKLLSDAHEQLHGFDSSRVKPLLALANYIAKRQ 346
>sp|O04046|GGPP2_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 2
OS=Arabidopsis thaliana GN=GGPPS2 PE=1 SV=2
Length = 376
Score = 192 bits (488), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 121/309 (39%), Positives = 171/309 (55%), Gaps = 56/309 (18%)
Query: 50 IKSNNNNPFPEIQIDEYMTLKAKKINKALFEGAAV--PL----ILQYPTLPNHEGERVHG 103
I SN N F + D YM KA+ +NKAL E V PL ++Y L G+RV
Sbjct: 75 IVSNANFTF---EFDPYMMSKAESVNKALEEAIPVGEPLKIHEAMRYAILAA--GKRVRP 129
Query: 104 TLCIASCELVGGNESSVMPLACAAEMLVTLALNR-------------------------- 137
LC+ASCELVGG E++ MP ACA EM+ T++L +
Sbjct: 130 ILCLASCELVGGQENAAMPAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVYGEGV 189
Query: 138 ------ALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKGKD-- 189
ALL A EHM T +S +R+V A+ E++ ++GTRG++AG+ M+I+S+G D
Sbjct: 190 AILSGGALLSLAFEHMTTA--EISSERMVWAVRELARSIGTRGLVAGQAMDISSEGLDLN 247
Query: 190 -VSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDN 248
V L L+FI + L+E + V G +IGGGS+E+IE +RK+ +C+GL +QV DDILD
Sbjct: 248 EVGLEHLEFIHVHKTAVLLETAAVLGAIIGGGSDEEIESVRKFARCIGLLFQVVDDILDE 307
Query: 249 MKKKKE----AGDDE----ATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHL 300
K +E AG D+ TYPKL+G+ +K + K L +A Q L F + APL L
Sbjct: 308 TKSSEELGKTAGKDQLAGKLTYPKLIGLEKSKEFVKRLTKDARQHLQGFSSEKVAPLVAL 367
Query: 301 ADFLVSRHK 309
F+ +R+K
Sbjct: 368 TTFIANRNK 376
>sp|P80042|GGPPS_CAPAN Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Capsicum
annuum GN=GGPS1 PE=3 SV=1
Length = 369
Score = 190 bits (482), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 124/343 (36%), Positives = 179/343 (52%), Gaps = 61/343 (17%)
Query: 19 KTPLGKPKVAPNPKASHVPKSSSLDQAENLTIKSN-------NNNPFPEIQIDEYMTLKA 71
K PL K+ NPK + S L + T K + PF Y+T KA
Sbjct: 32 KIPLKNSKI--NPKLNKKRPFSPLTVSAIATTKEDERIEAAQTEEPF---NFKIYVTEKA 86
Query: 72 KKINKALFEGAAV--PLI----LQYPTLPNHEGERVHGTLCIASCELVGGNESSVMPLAC 125
+NKAL E V P + ++Y L G+RV LC+A+CELVGGN+ + M AC
Sbjct: 87 ISVNKALDEAIIVKEPHVIHEAMRYSLLAG--GKRVRPMLCLAACELVGGNQENAMAAAC 144
Query: 126 AAEMLVTLAL--------------------------------NRALLCYAVEHMATKTKN 153
A EM+ T++L +LL +A EH+ T
Sbjct: 145 AVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKIYGEDVAVLAGDSLLAFAFEHIVNSTAG 204
Query: 154 VSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKGK-DVSLSELDFIKRLRCGKLIEASVV 212
V+P R+V A+ E++ ++GT G++AG++ +I G VSL L+FI + L+E+SVV
Sbjct: 205 VTPSRIVGAVAELAKSIGTEGLVAGQVADIKCTGNASVSLETLEFIHVHKTAALLESSVV 264
Query: 213 CGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGD--------DEATYPK 264
G ++GGG+ ++EKLR++ +C+GL +QV DDILD K +E G D+ TYPK
Sbjct: 265 LGAILGGGTNVEVEKLRRFARCIGLLFQVVDDILDVTKSSEELGKTAGKDLVVDKTTYPK 324
Query: 265 LMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHLADFLVSR 307
L+G+ AK +A EL EA Q+L FD +AAPL LAD++ R
Sbjct: 325 LLGLEKAKEFAAELNREAKQQLEGFDSRKAAPLIALADYIAYR 367
>sp|Q9SLG2|GGPP4_ARATH Geranylgeranyl pyrophosphate synthase 4 OS=Arabidopsis thaliana
GN=GGPP4 PE=2 SV=1
Length = 372
Score = 174 bits (441), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 107/294 (36%), Positives = 166/294 (56%), Gaps = 57/294 (19%)
Query: 66 YMTLKAKKINKALFEGAAVPLI--------LQYPTLPNHEGERVHGTLCIASCELVGGNE 117
YM KA+ IN+AL E A+PLI ++Y L G+RV LC+A+CELVGG E
Sbjct: 84 YMISKAETINRALDE--AIPLIEPLNIHKAMRYAILAG--GKRVRPILCLAACELVGGEE 139
Query: 118 SSVMPLACAAEMLVTLALNR--------------------------------ALLCYAVE 145
+ ACA EM+ T++L + ALL A E
Sbjct: 140 RLAIQAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVFGESVAILSGGALLALAFE 199
Query: 146 HMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKG---KDVSLSELDFIKRLR 202
H+ +VS ++VRA+ E++ ++GT+G++AG+ +++S+G DV L +L++I +
Sbjct: 200 HLTEA--DVSSKKMVRAVKELAKSIGTKGLVAGQAKDLSSEGLEQNDVGLEDLEYIHVHK 257
Query: 203 CGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKE----AGDD 258
G L+EAS V G +IGGG+E++IEK+R + +C+GL +QV DDILD K +E AG D
Sbjct: 258 TGSLLEASAVIGAVIGGGTEKEIEKVRNFARCIGLLFQVVDDILDETKSSEELGKTAGKD 317
Query: 259 EA----TYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHLADFLVSRH 308
+ TYPK++GV +K + ++L +A + L FD + PL L +F+ +R+
Sbjct: 318 KVAGKLTYPKVIGVEKSKEFVEKLKRDAREHLQGFDSDKVKPLIALTNFIANRN 371
>sp|Q9LUE1|GGPP9_ARATH Geranylgeranyl pyrophosphate synthase 9, chloroplastic
OS=Arabidopsis thaliana GN=GGPPS9 PE=1 SV=1
Length = 360
Score = 172 bits (436), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 180/310 (58%), Gaps = 58/310 (18%)
Query: 51 KSNNNNPFPEIQIDEYMTLKAKKINKALFEGAAVPLI--------LQYPTLPNHEGERVH 102
KSN+NN + ++ YM KA+ +N AL +VPL+ ++Y L G+RV
Sbjct: 56 KSNDNNSAFDFKL--YMIRKAESVNAAL--DVSVPLLKPLTIQEAVRYSLLAG--GKRVR 109
Query: 103 GTLCIASCELVGGNESSVMPLACAAEMLVTLAL-NRALLCY------------------- 142
LCIA+CELVGG+E++ M ACA EM+ T +L + L C
Sbjct: 110 PLLCIAACELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKVYGED 169
Query: 143 ------------AVEHMATKTKN-VSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKGKD 189
A EHM + V+P++++RA+ E++ A+GT G++AG+++++ S+ +
Sbjct: 170 MAVLAGDALLALAFEHMTVVSSGLVAPEKMIRAVVELARAIGTTGLVAGQMIDLASERLN 229
Query: 190 ---VSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDIL 246
V L L+FI + L+EA+ V GV++GGG+E++IEKLRKY +C+GL +QV DDIL
Sbjct: 230 PDKVGLEHLEFIHLHKTAALLEAAAVLGVIMGGGTEQEIEKLRKYARCIGLLFQVVDDIL 289
Query: 247 DNMKKKKE----AGDD----EATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLY 298
D K +E AG D + TYP+L+G+ G++ A++L EA ++L FDP++AAPL
Sbjct: 290 DVTKSTEELGKTAGKDVMAGKLTYPRLIGLEGSREVAEKLRREAEEQLLGFDPSKAAPLV 349
Query: 299 HLADFLVSRH 308
LA ++ RH
Sbjct: 350 ALASYIACRH 359
>sp|Q9LRR0|GGPP8_ARATH Putative geranylgeranyl pyrophosphate synthase 8, chloroplastic
OS=Arabidopsis thaliana GN=At3g14510 PE=5 SV=2
Length = 361
Score = 169 bits (429), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 112/310 (36%), Positives = 176/310 (56%), Gaps = 57/310 (18%)
Query: 51 KSNNNNPFPEIQIDEYMTLKAKKINKALFEGAAVPL--------ILQYPTLPNHEGERVH 102
KSN++N + ++ YM KA+ +N AL + + VPL ++Y L G+RV
Sbjct: 56 KSNDHNSAFDFKL--YMIRKAESVNAAL-DVSIVPLREPLTVQEAVRYSLLAG--GKRVR 110
Query: 103 GTLCIASCELVGGNESSVMPLACAAEMLVTLAL-NRALLCY------------------- 142
LCIA CELVGG+E++ M ACA EM+ T +L + L C
Sbjct: 111 PLLCIAVCELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKVFGED 170
Query: 143 ------------AVEHMATKTKN-VSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKG-- 187
A EHM + V+ +R++RA+ E++ A+GT+G++AG++++++S+
Sbjct: 171 MAVLAGDALLALAFEHMTVVSSGLVASERMIRAVVELARAIGTKGLVAGQVVDLSSERLN 230
Query: 188 -KDVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDIL 246
DV L L+FI + L+EA+ V G ++GGG+EE+IEKLRKY +C+GL +QV DDIL
Sbjct: 231 PHDVGLERLEFIHLHKTAALLEAAAVIGAIMGGGTEEEIEKLRKYARCIGLLFQVVDDIL 290
Query: 247 DNMKKKKE----AGDD----EATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLY 298
D K +E AG D + TYP+L+G+ ++ A++L EA ++L F+ +AAPL
Sbjct: 291 DVTKSTEELGKTAGKDVMAGKLTYPRLIGLERSREVAEKLSREAEEQLLGFESDKAAPLV 350
Query: 299 HLADFLVSRH 308
LA ++ R+
Sbjct: 351 ALASYISCRN 360
>sp|Q9LJY2|GGPPA_ARATH Geranylgeranyl pyrophosphate synthase 10, mitochondrial
OS=Arabidopsis thaliana GN=At3g20160 PE=2 SV=1
Length = 344
Score = 168 bits (426), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 112/298 (37%), Positives = 159/298 (53%), Gaps = 62/298 (20%)
Query: 66 YMTLKAKKINKALFEGAAVPL---------ILQYPTLPNHEGERVHGTLCIASCELVGGN 116
YM KAK +NKAL E AVPL ++Y L + G+RV LC+A+CELVGG
Sbjct: 53 YMVNKAKSVNKALEE--AVPLREPELKIREAMRYTLLSD--GKRVRPMLCLAACELVGGQ 108
Query: 117 ESSVMPLACAAEML--------------------------------VTLALNRALLCYAV 144
ES+ M ACA EML + + ++AL+ AV
Sbjct: 109 ESTAMSAACAIEMLHASSLILDDLPCMDNDSLRRGKPTNHIVFGESIAILASQALIALAV 168
Query: 145 EHMATKT-KNVSPDRLVRAIGEISSAV-----GTRGVLAGRIMEINSKGKDVSLSELDFI 198
+ + T +V P+R+++ + E+ AV G + LAG M +S D L L+FI
Sbjct: 169 QKTTSSTFADVPPERILKTVQEMVKAVEGLVAGQQADLAGEGMRFDS---DTGLEHLEFI 225
Query: 199 KRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKE---- 254
+ L+EA+ V G ++GGGS+E+IE+LR Y +C+GL +QV DD+LD K +E
Sbjct: 226 HIHKTAALLEAAAVMGAIMGGGSDEEIERLRSYARCIGLMFQVVDDVLDVTKSSEELGKT 285
Query: 255 AGDD----EATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHLADFLVSRH 308
AG D + TYP+LMGV +K YA+ L EA + L FD + APL LAD++V+R
Sbjct: 286 AGKDLIAGKLTYPRLMGVEKSKEYAERLNIEAREHLLGFDIDKVAPLVSLADYIVNRQ 343
>sp|Q9LUD9|GGPP3_ARATH Geranylgeranyl pyrophosphate synthase 3, chloroplastic
OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1
Length = 360
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 176/310 (56%), Gaps = 58/310 (18%)
Query: 51 KSNNNNPFPEIQIDEYMTLKAKKINKALFEGAAVPL--------ILQYPTLPNHEGERVH 102
K N++N + ++ YM KA+ +N AL +VPL ++Y L G+RV
Sbjct: 56 KCNDHNSAFDFKL--YMIRKAESVNAAL--DVSVPLREPLTVQEAVRYSLLAG--GKRVR 109
Query: 103 GTLCIASCELVGGNESSVMPLACAAEMLVTLAL-NRALLCY------------------- 142
LCIA CELVGG+E++ M ACA EM+ T +L + L C
Sbjct: 110 PLLCIAVCELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKVYGED 169
Query: 143 ------------AVEHMATKTKN-VSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKGKD 189
A EHM + V+P+R++RA+ E++ A+GT G++AG+++++ S+ +
Sbjct: 170 MAVLAGDALLALAFEHMTVVSSGLVAPERMIRAVVELARAIGTTGLVAGQMIDLASERLN 229
Query: 190 ---VSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDIL 246
V L L+FI + L+EA+ V GV++GGG+EE+IEKLRKY +C+GL +QV DDIL
Sbjct: 230 PDKVGLEHLEFIHLHKTAALLEAAAVLGVIMGGGTEEEIEKLRKYARCIGLLFQVVDDIL 289
Query: 247 DNMKKKKE----AGDD----EATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLY 298
D K +E AG D + TYP+L+G+ +K A++L EA ++L FDP++AAPL
Sbjct: 290 DVTKSTEELGKTAGKDVMAGKLTYPRLIGLERSKEVAEKLRREAEEQLLGFDPSKAAPLV 349
Query: 299 HLADFLVSRH 308
LA ++ RH
Sbjct: 350 ALASYIACRH 359
>sp|P48368|CRTE_CYAPA Geranylgeranyl pyrophosphate synthase homolog OS=Cyanophora
paradoxa GN=crtE PE=3 SV=1
Length = 300
Score = 163 bits (413), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/252 (35%), Positives = 144/252 (57%), Gaps = 42/252 (16%)
Query: 98 GERVHGTLCIASCELVGGNESSVMPLACAAEMLVTLAL---------------------- 135
G+R+ LC+ASCEL GG +P ACA EM+ T++L
Sbjct: 49 GKRIRPILCLASCELAGGTMEMALPTACALEMIHTMSLIHDDLPAMDNDSYRRGKPTNHI 108
Query: 136 ----------NRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINS 185
ALL YA E +AT+TKNV D +V+ I +++ +V T G++ G+I++++S
Sbjct: 109 IYGEDLAILAGDALLAYAFEFIATQTKNVPADLIVKVIAQVAHSVTTSGLVGGQIIDLSS 168
Query: 186 KGK-DVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDD 244
+GK D +L L+FI + G L+EA+V+ G L+ G E+D+ + +Y + +GLA+Q+ DD
Sbjct: 169 EGKSDTTLETLNFIHIHKTGALLEAAVLSGALLAGAKEKDMNRFLRYAQNIGLAFQIIDD 228
Query: 245 ILDNMKKKKEAG--------DDEATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAP 296
+LD + +++ G +ATYP GV + + A+ LV EA +E+ YFD +A P
Sbjct: 229 VLDIISTEEKLGKSIGKDLKTQKATYPSFWGVEESIKQAELLVEEAKEEILYFD-NKAIP 287
Query: 297 LYHLADFLVSRH 308
L +ADF+V+R+
Sbjct: 288 LIAIADFIVNRN 299
>sp|Q9LIA0|GGPPB_ARATH Geranylgeranyl pyrophosphate synthase 11, chloroplastic
OS=Arabidopsis thaliana GN=At3g29430 PE=2 SV=1
Length = 357
Score = 162 bits (409), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 115/310 (37%), Positives = 172/310 (55%), Gaps = 58/310 (18%)
Query: 51 KSNNNNPFPEIQIDEYMTLKAKKINKALFEGAAVPL--------ILQYPTLPNHEGERVH 102
KSN+ N YM KA+ ++ AL +VPL ++Y L G+RV
Sbjct: 53 KSNDRNS--AFDFKSYMIRKAESVSAAL--NVSVPLQEPLTIQEAVRYSLLAG--GKRVR 106
Query: 103 GTLCIASCELVGGNESSVMPLACAAEMLVTLAL-NRALLCY------------------- 142
LCIA+CELVGG+E++ M ACA EM+ T +L + L C
Sbjct: 107 PLLCIAACELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDDADLRRGKPTNHKEFGED 166
Query: 143 ------------AVEHMATKTKN-VSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKG-- 187
A EHM + V+P+R++RA+ E++ A+GT+G++AG++ ++ S+G
Sbjct: 167 MAVLAGDALLALAFEHMTFVSNGLVAPERMIRAVMELAKAIGTKGLVAGQVTDLCSQGLN 226
Query: 188 -KDVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDIL 246
DV L L+FI + L+EA+ V G ++GGG+EE+IEKLRKY +C+GL +QV DDIL
Sbjct: 227 PDDVGLERLEFIHLHKTAALLEAAAVLGAIMGGGTEEEIEKLRKYARCIGLLFQVVDDIL 286
Query: 247 DNMKKKKE----AGDD----EATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLY 298
D + KE AG D + TYP+L+G+ ++ A++L EA ++L FD +AAPL
Sbjct: 287 DVTESTKELGKTAGKDVMAGKLTYPRLIGLERSREVAEKLRREAAEQLLGFDSDKAAPLV 346
Query: 299 HLADFLVSRH 308
LA ++ RH
Sbjct: 347 ALASYIACRH 356
>sp|Q9LHR4|GGPPC_ARATH Geranylgeranyl pyrophosphate synthase 12, chloroplastic
OS=Arabidopsis thaliana GN=At3g32040 PE=2 SV=1
Length = 360
Score = 157 bits (397), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 110/308 (35%), Positives = 171/308 (55%), Gaps = 54/308 (17%)
Query: 51 KSNNNNPFPEIQIDEYMTLKAKKINKAL------FEGAAVPLILQYPTLPNHEGERVHGT 104
KSN+ N YM KA+ ++ AL + A+ ++Y L G+RV
Sbjct: 56 KSNDRNF--AFDFKSYMIRKAESVSMALNVSVPPQDPLAIQEAVRYSLLAG--GKRVRPL 111
Query: 105 LCIASCELVGGNESSVMPLACAAEMLVTLAL-NRALLCY--------------------- 142
LCIA+CELVGG+E++ M ACA EM+ T +L + L C
Sbjct: 112 LCIAACELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDDADLRRGKPTNHKVFGEHMA 171
Query: 143 ----------AVEHMATKTKN-VSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKG---K 188
A EHM + V+P+R++R++ E++ A+GT+G++AG++ ++ S+G
Sbjct: 172 VLAGDALLALAFEHMTVVSSGLVAPERMIRSVTELAKAIGTKGLVAGQVSDLCSQGLNPY 231
Query: 189 DVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDN 248
DV L L+FI + L+EA+ V G +IGGG+EE+I+KLRKYG+C+GL +QV DDI+D
Sbjct: 232 DVGLERLEFIHLHKTAALLEAAAVLGAIIGGGTEEEIQKLRKYGRCIGLLFQVVDDIIDV 291
Query: 249 MKKKKE----AGDD----EATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHL 300
+ +E AG D + TYP+L+G+ ++ A++L EA ++L FD + APL L
Sbjct: 292 TESTEELGKTAGKDVMARKLTYPRLIGLERSREVAEKLRREAAEQLLGFDSNKVAPLVAL 351
Query: 301 ADFLVSRH 308
A ++ RH
Sbjct: 352 ASYIACRH 359
>sp|O22043|GGPP6_ARATH Geranylgeranyl pyrophosphate synthase 6, mitochondrial
OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2
Length = 336
Score = 156 bits (394), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 110/303 (36%), Positives = 161/303 (53%), Gaps = 62/303 (20%)
Query: 66 YMTLKAKKINKALFEGAAVPLI-----LQYPTLPNHE---------GERVHGTLCIASCE 111
YM KAK INKAL ++PL L P L H+ G+RV LC+ +CE
Sbjct: 35 YMKNKAKSINKAL--DNSIPLCNNFVPLWEPVLEVHKAMRYTLLPGGKRVRPMLCLVACE 92
Query: 112 LVGGNESSVMPLACAAEML--------------------------------VTLALNRAL 139
LVGG ES+ MP ACA EM+ ++ + AL
Sbjct: 93 LVGGQESTAMPAACAVEMIHAASLILDDLPCMDDDSLRRGKPTNHKVFGEKTSILASNAL 152
Query: 140 LCYAVEH-MATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEI-----NSKGKDVSLS 193
AV+ +A+ + V+ +R++RA+ E++ AVGT G++AG+ ++ + K +D L
Sbjct: 153 RSLAVKQTLASTSLGVTSERVLRAVQEMARAVGTEGLVAGQAADLAGERMSFKNEDDELR 212
Query: 194 ELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKK 253
L+ + + L+EA+ V G ++GGGS+E+IE+L+ Y +CVGL +QV DD+LD K +
Sbjct: 213 YLELMHVHKTAVLVEAAAVVGAIMGGGSDEEIERLKSYARCVGLMFQVMDDVLDETKSSE 272
Query: 254 E----AGDD----EATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHLADFLV 305
E AG D + TYPK+MGV A+ YAK L EA + L FD + PL LAD++V
Sbjct: 273 ELGKTAGKDLITGKLTYPKVMGVDNAREYAKRLNREAQEHLQGFDSDKVVPLLSLADYIV 332
Query: 306 SRH 308
R
Sbjct: 333 KRQ 335
>sp|Q08291|ISPA_GEOSE Farnesyl diphosphate synthase OS=Geobacillus stearothermophilus
PE=1 SV=1
Length = 297
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 114/242 (47%), Gaps = 41/242 (16%)
Query: 98 GERVHGTLCIASCELVGGNESSVMPLACAAEMLVTLAL---------------------- 135
G+R+ L +++ +G + + +P+ACA EM+ T +L
Sbjct: 46 GKRIRPLLLLSTVRALGKDPAVGLPVACAIEMIHTYSLIHDDLPSMDNDDLRRGKPTNHK 105
Query: 136 ----------NRALLCYAVEHMA-TKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEIN 184
LL YA + + + + P +R I ++ A G G++AG+ ++
Sbjct: 106 VFGEAMAILAGDGLLTYAFQLITEIDDERIPPSVRLRLIERLAKAAGPEGMVAGQAADME 165
Query: 185 SKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDD 244
+GK ++LSEL++I R + GK+++ SV G LIGG +L ++ +GLA+Q+ DD
Sbjct: 166 GEGKTLTLSELEYIHRHKTGKMLQYSVHAGALIGGADARQTRELDEFAAHLGLAFQIRDD 225
Query: 245 ILD----NMKKKKEAGDDE----ATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAP 296
ILD K K G D+ ATYP L+ +AGAK + A + L D AA
Sbjct: 226 ILDIEGAEEKIGKPVGSDQSNNKATYPALLSLAGAKEKLAFHIEAAQRHLRNADVDGAAL 285
Query: 297 LY 298
Y
Sbjct: 286 AY 287
>sp|Q39108|GGR_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase small subunit,
chloroplastic OS=Arabidopsis thaliana GN=GGR PE=1 SV=2
Length = 326
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 113/238 (47%), Gaps = 50/238 (21%)
Query: 61 IQIDEYMTLKAKKINKALFEGAAVPL--------ILQYPTLPNHEGERVHGTLCIASCEL 112
+ Y T +IN+ L E A+P+ ++Y L +R +C+A+CEL
Sbjct: 45 FDLRTYWTTLITEINQKLDE--AIPVKHPAGIYEAMRYSVL-AQGAKRAPPVMCVAACEL 101
Query: 113 VGGNESSVMPLACAAEMLVTLAL--------------------------------NRALL 140
GG+ + P ACA EM+ +L AL
Sbjct: 102 FGGDRLAAFPTACALEMVHAASLIHDDLPCMDDDPVRRGKPSNHTVYGSGMAILAGDALF 161
Query: 141 CYAVEHMATKTKN--VSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKGKDVSLSELDFI 198
A +H+ + T V ++R I EI+ VG+ G+ AG+ +++ +G LS F+
Sbjct: 162 PLAFQHIVSHTPPDLVPRATILRLITEIARTVGSTGMAAGQYVDL--EGGPFPLS---FV 216
Query: 199 KRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG 256
+ + G + E S VCG L+GG +E++++ LR+YG+ VG+ YQV DDI ++ KK + G
Sbjct: 217 QEKKFGAMGECSAVCGGLLGGATEDELQSLRRYGRAVGMLYQVVDDITEDKKKSYDGG 274
>sp|P45204|ISPA_HAEIN Farnesyl diphosphate synthase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ispA PE=3 SV=1
Length = 295
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 107/182 (58%), Gaps = 17/182 (9%)
Query: 138 ALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKGKDVSLSELDF 197
AL +A E + TKT N+S ++ + I ++ G +G+ G+ +++ S+ K +SLSEL+
Sbjct: 117 ALQSFAFE-ILTKTPNISTEQKLALIQILAQGAGVQGMCLGQSLDLISEHKQISLSELEL 175
Query: 198 IKRLRCGKLIEASVVCGVLIG-GGSEEDIEK-LRKYGKCVGLAYQVWDDILDNMKKKKEA 255
I R + G L+ A++ G + +++ +E+ L +Y + +GLA+QV DDILD E
Sbjct: 176 IHRNKTGALLIAALKLGFICSPHFTDKRLEQSLTQYAEAIGLAFQVQDDILDIEGDSAEI 235
Query: 256 GD--------DEATYPKLMGVAGAKRYAKELVAEANQELAY--FDPTRAAPLYHLADFLV 305
G D++TYPKL+G++GAK+ A++L A EL FD T A LA+F++
Sbjct: 236 GKQVGADLDLDKSTYPKLLGLSGAKQKAQDLYQSALSELEKIPFDTTVRA----LAEFII 291
Query: 306 SR 307
+R
Sbjct: 292 TR 293
>sp|P54383|ISPA_BACSU Farnesyl diphosphate synthase OS=Bacillus subtilis (strain 168)
GN=ispA PE=3 SV=2
Length = 296
Score = 91.7 bits (226), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 117/251 (46%), Gaps = 42/251 (16%)
Query: 98 GERVHGTLCIASCELVGGNESSVMPLACAAEMLVTLAL---------------------- 135
G+R+ + +A G +E +P+ CA EM+ T +L
Sbjct: 45 GKRLRPLIVLAVLNAYGKSEKDGIPVGCAVEMIHTYSLIHDDLPCMDDDDLRRGKPTNHK 104
Query: 136 --NRALLCYAVEHMATKT---------KNVSPDRLVRAIGEISSAVGTRGVLAGRIMEIN 184
A A + + T++ VS ++ +R + E+ SA GT G++ G++ ++
Sbjct: 105 VFGEATAVLAGDGLLTESFKLITSHVSDEVSAEKRLRLVNELISAAGTEGMVGGQVADME 164
Query: 185 SKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDD 244
++ + V+L EL+ I + KL+ V+ G ++ EEDIE LR + +G+ +Q+ DD
Sbjct: 165 AENRQVTLEELESIHERKTAKLLGFCVIAGAILADAPEEDIETLRTFSSHIGIGFQIRDD 224
Query: 245 ILDNMKKKKEAG--------DDEATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAP 296
ILD +++ G +D++TYP L+ + GAK + EA + + +
Sbjct: 225 ILDLEGSEEKIGKRVGSDTTNDKSTYPSLLSLEGAKHKLDVHIKEAKRLIGGLSLQKDL- 283
Query: 297 LYHLADFLVSR 307
LY L D + +R
Sbjct: 284 LYELCDLIAAR 294
>sp|P22939|ISPA_ECOLI Farnesyl diphosphate synthase OS=Escherichia coli (strain K12)
GN=ispA PE=1 SV=1
Length = 299
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 92/167 (55%), Gaps = 11/167 (6%)
Query: 154 VSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKGKDVSLSELDFIKRLRCGKLIEASVVC 213
VS + I E++SA G G+ G+ ++++++GK V L L+ I R + G LI A+V
Sbjct: 133 VSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRL 192
Query: 214 GVLIGGG-SEEDIEKLRKYGKCVGLAYQVWDDILDNMKK-----KKEAGDDE---ATYPK 264
G L G + L KY + +GLA+QV DDILD + K++ D + +TYP
Sbjct: 193 GALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPA 252
Query: 265 LMGVAGAKRYAKELVAEANQELAYF--DPTRAAPLYHLADFLVSRHK 309
L+G+ A++ A++L+ +A Q L + L LAD+++ R+K
Sbjct: 253 LLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYIIQRNK 299
>sp|O66126|ISPA_MICLU Farnesyl diphosphate synthase OS=Micrococcus luteus GN=fps PE=3
SV=1
Length = 291
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 115/252 (45%), Gaps = 43/252 (17%)
Query: 98 GERVHGTLCIASCELVGGNESSVMPLACAAEMLVTLAL---------------------- 135
G+R+ L + + + +GGN +P A EM+ T +L
Sbjct: 43 GKRIRPLLVLTTLDSLGGNAHDGLPFGIALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHK 102
Query: 136 ----------NRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINS 185
ALL A + + N + I +S+A G+ G++ G+++++
Sbjct: 103 RFDEATAILAGDALLTDAFQCILNTQLNAEIK--LSLINLLSTASGSNGMVYGQMLDMQG 160
Query: 186 KGKDVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDI 245
+ K ++L+EL+ I + G+LI A++V +I ++ IE+L GK VGL +Q+ DDI
Sbjct: 161 EHKTLTLNELERIHIHKTGELIRAAIVSAGIIMNFNDAQIEQLNIIGKNVGLMFQIKDDI 220
Query: 246 LD------NMKKK--KEAGDDEATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPL 297
LD N+ K + +D++TY L+G+ +K+ + + E L P L
Sbjct: 221 LDVEGSFENIGKTVGSDLNNDKSTYVSLLGLEASKQLLNDKLTETYDALKTLQPIN-DNL 279
Query: 298 YHLADFLVSRHK 309
L ++V R+K
Sbjct: 280 KTLITYIVERNK 291
>sp|P55539|ISPA_RHISN Probable farnesyl diphosphate synthase OS=Rhizobium sp. (strain
NGR234) GN=NGR_a02750 PE=3 SV=1
Length = 332
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 71/149 (47%), Gaps = 16/149 (10%)
Query: 157 DRLVRAIGEISSAVGTRGVLAGRIMEINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVL 216
D + + E++ AV G G+ M+++ GK V L + + R++CG L+ ASV G L
Sbjct: 163 DNRIALVRELAQAVSAEGAAGGQAMDLSLVGKHVELDRIVAMHRMKCGALVRASVRMGAL 222
Query: 217 IGGGSEEDIEK------LRKYGKCVGLAYQVWDDILDNMKKK--------KEAGDDEATY 262
ED L Y C GLA QV DDILD K+A + T
Sbjct: 223 C--AIAEDAADATLYCALDHYSACFGLALQVVDDILDATADTATLGKTPGKDAAAQKPTC 280
Query: 263 PKLMGVAGAKRYAKELVAEANQELAYFDP 291
+MG+ A+++A +L+ EA + +A P
Sbjct: 281 ASIMGLQAARQFALDLLCEAGEAIAPLGP 309
>sp|Q8K9A0|ISPA_BUCAP Farnesyl diphosphate synthase OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=ispA PE=3 SV=1
Length = 294
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 72/128 (56%), Gaps = 5/128 (3%)
Query: 160 VRAIGEISSAVGTRGVLAGRIMEINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIGG 219
++ I E S+A+G G+ G+++++ + K +++SEL+ I + LI S+
Sbjct: 139 LKMIAEFSNAIGYSGMCIGQMLDLEKERKKINISELEKINLYKTAFLIRCSIRLAYFASN 198
Query: 220 G-SEEDIEKLRKYGKCVGLAYQVWDDILD--NMKKKKEAGDDEA--TYPKLMGVAGAKRY 274
S+E + L K+ +GLA+Q+ DDILD N KK E+ ++ TYP L+G+ +K
Sbjct: 199 NFSKEVLFILDKFSVSIGLAFQIQDDILDLKNDIKKLESKRNKTKNTYPLLIGLKKSKIK 258
Query: 275 AKELVAEA 282
KEL EA
Sbjct: 259 IKELYKEA 266
>sp|Q45220|ISPA_BRAJA Probable farnesyl diphosphate synthase OS=Bradyrhizobium japonicum
(strain USDA 110) GN=fppS PE=3 SV=1
Length = 332
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 155 SPDRLVRAIGEISSAVGTRGVLAGRIMEINSKGKDVSLSELDFIKRLRCGKLIEASV--- 211
SP LVR E++ AV G G+ ++++ GK V L + + R++ G L+ ASV
Sbjct: 164 SPIALVR---ELAQAVSAEGAAGGQAIDLSLVGKHVELDRIVAMHRMKSGALVRASVRMG 220
Query: 212 -VCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKK--------KEAGDDEATY 262
+C V + L Y C GLA QV DDILD K+A + T
Sbjct: 221 ALCAVGVNAAHAALYCALDHYSACFGLALQVIDDILDVTADTAALGKTPGKDAAAQKPTC 280
Query: 263 PKLMGVAGAKRYAKELVAEANQELAYFDPT--RAAPLYHLADFLVSRH 308
+MG+ A+++A +L+ +A + +A P R A L A+ + +H
Sbjct: 281 ASIMGLQEARQFALDLLRDAGEAIAPLGPRAERLAQLIQRANAYLFKH 328
>sp|P57537|ISPA_BUCAI Farnesyl diphosphate synthase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=ispA PE=3 SV=1
Length = 282
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 92/176 (52%), Gaps = 19/176 (10%)
Query: 109 SCELVGGNESSVMPLACAAEMLVTLALNRALLCYAVEHMATKTKNVSPDRLVRAIGEISS 168
SC + G +S++ A + L +LA N +L + NVS + ++ I E+S
Sbjct: 100 SCHVKYGESTSLL----AGDALQSLAFN--ILSNSF------MPNVSNLKRIKMISELSY 147
Query: 169 AVGTRGVLAGRIMEINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIGGG-SEEDIEK 227
++G+ G+ G+ +++ ++ KDV+LSEL+ I + L+ ++V S+ +
Sbjct: 148 SIGSSGMCMGQNLDLEAEKKDVNLSELEIINLYKTSFLMRSAVRLVYFSSNNFSKSILSI 207
Query: 228 LRKYGKCVGLAYQVWDDILDNMKKKKEAGDDEA-----TYPKLMGVAGAKRYAKEL 278
L + +GLA+Q+ DDILD KK D++ TYP ++G+ +++ K+L
Sbjct: 208 LDLFSISIGLAFQIQDDILD-FKKDSVKTDNKKIIKKHTYPLIIGLDESRKKIKQL 262
>sp|Q58270|IDSA_METJA Short chain isoprenyl diphosphate synthase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=idsA PE=3 SV=1
Length = 327
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 72/157 (45%), Gaps = 45/157 (28%)
Query: 195 LDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKE 254
LD I++ + G L+EASV G ++ +EE+ E L++Y K +GL +Q+ DD+LD + +K+
Sbjct: 170 LDMIRK-KTGALLEASVGIGAVMADCNEEEREALKEYAKRIGLTFQIQDDVLDLIGDQKK 228
Query: 255 AGD----------------------DEATYPKLMGVAGAK------------------RY 274
G DE +L+ + G K Y
Sbjct: 229 LGKPVGSDIREGKKTIIVIHALKTLDEDKKKRLLEILGNKNVKDEEIKEAIEILKPSIEY 288
Query: 275 AKELV----AEANQELAYFDPTRAAPLYHLADFLVSR 307
AKEL+ EA + L F+ R L LADF++SR
Sbjct: 289 AKELMKQKTEEAKEYLKIFNKDRRKVLEDLADFIMSR 325
>sp|P22873|CRTE_ESCVU Geranylgeranyl pyrophosphate synthase OS=Escherichia vulneris
GN=crtE PE=3 SV=1
Length = 307
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 95/211 (45%), Gaps = 20/211 (9%)
Query: 106 CIASCELVGGNESSVMPLACAAEMLVTLALNRALLCYAVEHMATKTKNVSPDRLVRAIGE 165
C+ + EL G ++ + +L ++ L L A +A T ++ +R +A+ E
Sbjct: 97 CMDNAELRRGQPTTHKKFGESVAILASVGL----LSKAFGLIAA-TGDLPGERRAQAVNE 151
Query: 166 ISSAVGTRGVLAGRIMEINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDI 225
+S+AVG +G++ G+ ++N D + + L+ G L A + + S
Sbjct: 152 LSTAVGVQGLVLGQFRDLNDAALDRTPDAILSTNHLKTGILFSAMLQIVAIASASSPSTR 211
Query: 226 EKLRKYGKCVGLAYQVWDDILDNM-----KKKKEAGDDEATYPKLMGVAGAKRYAKELVA 280
E L + G A+Q+ DD+ D+ + K+AG ++T +G A++ +E +
Sbjct: 212 ETLHAFALDFGQAFQLLDDLRDDHPETGKDRNKDAG--KSTLVNRLGADAARQKLREHID 269
Query: 281 EANQELAYFDPTRAAPL--------YHLADF 303
A++ L + P A +HLAD+
Sbjct: 270 SADKHLTFACPQGGAIRQFMHLWFGHHLADW 300
>sp|Q8PW34|GGPP_METMA Geranylgeranyl diphosphate synthase OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=MM_1767 PE=3 SV=1
Length = 324
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 82/183 (44%), Gaps = 29/183 (15%)
Query: 93 LPNHEGERVHGTLCIASCELVGGNESSVMPLACAAEMLVTLALNRALLCYAVEHM----A 148
L + G+R+ + I + E VG N SV+P A A E++ L + + A
Sbjct: 40 LVDAGGKRLRPAVLILAAEAVGSNLRSVLPAAVAVELVHNFTLIHDDIMDRDDIRRGMPA 99
Query: 149 TKTKN------VSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKG--------------- 187
K ++ D L EI S V V + M++ SK
Sbjct: 100 VHVKWGEAGAILAGDTLYSKAFEILSKVENEPVRVLKCMDVLSKTCTEICEGQWLDMDFE 159
Query: 188 --KDVSLSE-LDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDD 244
K V+ SE L+ +++ + L A+ G L+GG S+E E L +YG+ +G+ +Q++DD
Sbjct: 160 TRKKVTESEYLEMVEK-KTSVLYAAAAKIGALLGGASDEVAEALSEYGRLIGIGFQMYDD 218
Query: 245 ILD 247
+LD
Sbjct: 219 VLD 221
>sp|O26156|IDSA_METTH Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=idsA PE=3 SV=1
Length = 325
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 214 GVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG 256
G ++GGGS ++I L YG+C+GLA+Q+ DD LD + ++ G
Sbjct: 185 GAIMGGGSPQEIAALEDYGRCIGLAFQIHDDYLDVVSDEESLG 227
>sp|P21684|CRTE_PANAN Geranylgeranyl pyrophosphate synthase OS=Pantoea ananas GN=crtE
PE=3 SV=1
Length = 302
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 57/118 (48%)
Query: 161 RAIGEISSAVGTRGVLAGRIMEINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIGGG 220
RA+ E+S+A+G +G++ G+ +++ K S + + L AS+ ++
Sbjct: 148 RAVSELSNAIGMQGLVQGQFKDLSEGDKPRSAEAILMTNHFKTSTLFCASMQMASIVANA 207
Query: 221 SEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGDDEATYPKLMGVAGAKRYAKEL 278
S E + L ++ +G A+Q+ DD+ D M + + +A L+ + G + + L
Sbjct: 208 SSEARDCLHRFSLDLGQAFQLLDDLTDGMTDTGKDSNQDAGKSTLVNLLGPRAVEERL 265
>sp|O66952|ISPA_AQUAE Farnesyl diphosphate synthase OS=Aquifex aeolicus (strain VF5)
GN=ispA PE=3 SV=1
Length = 262
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 72 KKINKALFEGAAVPLILQYPTLPNHEGERVHGTLCIASCELVGGNESSVMPLACAAEML- 130
K++N+ L LI P +G+R+ +A +GGNE + + E++
Sbjct: 13 KRLNEILKPEGPEELIEAMKYYPLQKGKRIRPLFTVAVASALGGNEDDAITVGSGIELIH 72
Query: 131 -------------------------------VTLALNRALLCYAVEHMATKT--KNVSPD 157
+ L ALL Y E ++ + K +S +
Sbjct: 73 NYSLIHDDLPCMDNDVWRRGLPTCHIKFGEAMALLAGDALLTYTFEVLSQRENYKTLSCE 132
Query: 158 RLVRAIGEISSAVGTRGVLAGRIMEINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVLI 217
++ I+ G+ G++ G++++I KG + L E+ K G L EA +CG ++
Sbjct: 133 EILEINKIIAQKAGSNGMVGGQVLDI--KGYE-DLYEVSVKK---TGALFEACFMCGAVV 186
Query: 218 GGGSEEDIEKLRKYGKCVGLAYQVWDDILD 247
E ++++ G+ VGL +Q+ DD LD
Sbjct: 187 AK-RREKLKEMESIGRKVGLLFQMVDDYLD 215
>sp|O66129|HEXB_MICLU Hexaprenyl-diphosphate synthase large subunit
((2E,6E)-farnesyl-diphosphate specific) OS=Micrococcus
luteus GN=hexs-b PE=1 SV=1
Length = 325
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 197 FIKRL--RCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKK-- 252
+++R+ + LIEAS G L E+ ++++G C+G++YQ+ DDILD +
Sbjct: 163 YLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEAT 222
Query: 253 --KEAGDD----EATYPKLMGVAGAK 272
K G D TYP + +A K
Sbjct: 223 LGKPVGSDIRNGHITYPLMAAIANLK 248
>sp|P39464|GGPS_SULAC Geranylgeranyl diphosphate synthase OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=gds PE=1 SV=1
Length = 330
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 13/138 (9%)
Query: 121 MPLAC-AAEMLVTLALNRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGR 179
+PLA A ++L A LL A+ + ++T + D R+I IS R
Sbjct: 103 LPLAILAGDLLHAKAFQ--LLTQALRGLPSETIIKAFDIFTRSIIIISEGQAVDMEFEDR 160
Query: 180 IMEINSKGKDVSLSE-LDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLA 238
I D+ E LD I R + L AS G LI G ++ D+ + +G +G+A
Sbjct: 161 I--------DIKEQEYLDMISR-KTAALFSASSSIGALIAGANDNDVRLMSDFGTNLGIA 211
Query: 239 YQVWDDILDNMKKKKEAG 256
+Q+ DDIL +KE G
Sbjct: 212 FQIVDDILGLTADEKELG 229
>sp|Q53479|IDSA_METTM Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
marburgensis (strain DSM 2133 / 14651 / NBRC 100331 /
OCM 82 / Marburg) GN=idsA PE=1 SV=3
Length = 325
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 214 GVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG 256
G ++GG SE ++E L YGK +GLA+Q+ DD LD + ++ G
Sbjct: 185 GAIMGGASEREVEALEDYGKFIGLAFQIHDDYLDVVSDEESLG 227
>sp|Q7S565|COQ1_NEUCR Probable hexaprenyl pyrophosphate synthase, mitochondrial
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=NCU02305 PE=3 SV=1
Length = 449
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 201 LRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG 256
L+ LI S L+GG ++ YGK +GLA+Q+ DD+LD + +KE G
Sbjct: 299 LKTASLISKSCRASALLGGADAATVDAAYLYGKNLGLAFQLVDDMLDYTRSEKELG 354
>sp|Q8PYS1|GFPS_METMA Geranylfarnesyl diphosphate synthase OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=MM_0789 PE=1 SV=1
Length = 295
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 97/239 (40%), Gaps = 33/239 (13%)
Query: 98 GERVHGTLCIASCELVGGNESSVMPLACAAEM----------LVTLALNRALLCYAVEHM 147
G+R+ + + E+ G+ S + A A EM L+ L R L A E
Sbjct: 50 GKRIRPIILLLVSEICSGSYSRSLNAALAVEMMHSASLIHDDLLDQGLVRRNLPSAPEKF 109
Query: 148 ATKTKNVSPDRLV-RAIGEIS-------SAVGTRGVLAGRIMEINSKGKDVSLSELDFIK 199
+ D L+ ++I IS G G+ ++ K +D S E D+ K
Sbjct: 110 GPSGALLCGDYLIAKSIAFISPYGEKVIQDFGKAGMDMAEGEVLDLKLEDESFGENDYFK 169
Query: 200 RL--RCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMK--KKKEA 255
+ + L S G GG EE E+ +G +G AYQ+ DDIL+ ++ + KE+
Sbjct: 170 CIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEVVEGKES 229
Query: 256 GDDEATYPKLMGVAGAKRYA--------KELVAEANQELAYFD--PTRAAPLYHLADFL 304
T P + + +K A K VA A + L F P R L+ + D++
Sbjct: 230 KFTSETLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETLETFRECPAR-DKLFQITDYI 287
>sp|P17060|CRTE_RHOCB Geranylgeranyl pyrophosphate synthase OS=Rhodobacter capsulatus
(strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=crtE PE=3
SV=1
Length = 289
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 20/164 (12%)
Query: 128 EMLVTLALNRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTR-GVLAGRIMEINSK 186
E L LA +LL E +A V+PDR ++ I ++ G R G+ AG+ E SK
Sbjct: 103 EPLAVLA-GDSLLIRGFEVLA-DVGAVNPDRALKLISKLGQLSGARGGICAGQAWESESK 160
Query: 187 GKDVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDIL 246
+L + + G L A+ G + G + E G +G A+Q+ DD+
Sbjct: 161 ------VDLAAYHQAKTGALFIAATQMGAIAAG---YEAEPWFDLGMRIGSAFQIADDLK 211
Query: 247 DNMKKK----KEAGDDEA----TYPKLMGVAGAKRYAKELVAEA 282
D + K AG D A K MG+ GA+++ ++++A A
Sbjct: 212 DALMSAEAMGKPAGQDIANERPNAVKTMGIEGARKHLQDVLAGA 255
>sp|Q0INZ4|SPS3_ORYSJ Probable solanesyl-diphosphate synthase 3, chloroplastic (Fragment)
OS=Oryza sativa subsp. japonica GN=SPS3 PE=3 SV=1
Length = 372
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%)
Query: 189 DVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDN 248
D++L + + LI AS + G S E++ +YG+ +GL++QV DDILD
Sbjct: 210 DITLDDYLLKSYYKTASLIAASTRSAAIFSGVSTAICEQMYEYGRNLGLSFQVVDDILDF 269
Query: 249 MKKKKEAG 256
+ ++ G
Sbjct: 270 TQSAEQLG 277
>sp|P0AD58|ISPB_SHIFL Octaprenyl-diphosphate synthase OS=Shigella flexneri GN=ispB PE=3
SV=1
Length = 323
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 49/86 (56%), Gaps = 10/86 (11%)
Query: 179 RIMEINSKGKDVSLSELDFIKRL--RCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVG 236
++M +N D ++E ++++ + + +L EA+ C ++ G + E+ + L+ YG+ +G
Sbjct: 149 QLMNVN----DPDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEEEKGLQDYGRYLG 204
Query: 237 LAYQVWDDIL----DNMKKKKEAGDD 258
A+Q+ DD+L D + K GDD
Sbjct: 205 TAFQLIDDLLDYNADGEQLGKNVGDD 230
>sp|P0AD57|ISPB_ECOLI Octaprenyl-diphosphate synthase OS=Escherichia coli (strain K12)
GN=ispB PE=1 SV=1
Length = 323
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 49/86 (56%), Gaps = 10/86 (11%)
Query: 179 RIMEINSKGKDVSLSELDFIKRL--RCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVG 236
++M +N D ++E ++++ + + +L EA+ C ++ G + E+ + L+ YG+ +G
Sbjct: 149 QLMNVN----DPDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEEEKGLQDYGRYLG 204
Query: 237 LAYQVWDDIL----DNMKKKKEAGDD 258
A+Q+ DD+L D + K GDD
Sbjct: 205 TAFQLIDDLLDYNADGEQLGKNVGDD 230
>sp|P44916|ISPB_HAEIN Octaprenyl-diphosphate synthase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ispB PE=1 SV=1
Length = 329
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 10/88 (11%)
Query: 179 RIMEINSKGKDVSLSELDFIKRL--RCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVG 236
++M +N D SE ++++ + + +L E + ++ GG+E + L+ YG+ +G
Sbjct: 155 QLMNVN----DPETSEANYMRVIYSKTARLFEVAGQAAAIVAGGTEAQEKALQDYGRYLG 210
Query: 237 LAYQVWDDILD----NMKKKKEAGDDEA 260
A+Q+ DD+LD K GDD A
Sbjct: 211 TAFQLVDDVLDYSANTQALGKNVGDDLA 238
>sp|P55785|HEPS2_GEOSE Heptaprenyl diphosphate synthase component 2 OS=Geobacillus
stearothermophilus GN=hepT PE=3 SV=1
Length = 320
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 197 FIKRLR--CGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKE 254
+++R+R LI AS G L G E +++L +G VG+++Q+ DDILD +++
Sbjct: 163 YLRRIRRKTALLIAASCQLGALAAGAPEPIVKRLYWFGHYVGMSFQITDDILDFTGTEEQ 222
Query: 255 AG 256
G
Sbjct: 223 LG 224
>sp|P95999|GGPS_SULSO Geranylgeranyl diphosphate synthase OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=gds
PE=3 SV=2
Length = 332
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 29/188 (15%)
Query: 98 GERVHGTLCIASCELVGGNESSVMPLACAAEML--VTL---------ALNRALLCYAV-- 144
G+R+ + ++S +L+GG+ A A E+L TL L R L V
Sbjct: 44 GKRLRPLVLVSSSDLIGGDRERAYKAAAAVEILHNFTLVHDDIMDNDGLRRGLPTVHVKW 103
Query: 145 -EHMATKTKNVSPDRLVRAIGE-ISSAVGTRGVLAGRI----MEINSKGKDVSLS----- 193
E MA + + A+ E + G A I +EI S+G+ + +S
Sbjct: 104 GEPMAILAGDYLHAKAFEALNEALKGLDGNTFYKAFSIFITSIEIISEGQAMDMSFENRL 163
Query: 194 ---ELDFIKRLR--CGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDN 248
E ++I+ ++ L S G +I +++ ++KL +YG +G+++Q+ DDIL
Sbjct: 164 DVTEEEYIQMIKGKTAMLFSCSAALGGIINKANDDVVKKLTEYGLNLGISFQIVDDILGI 223
Query: 249 MKKKKEAG 256
+ +KE G
Sbjct: 224 IGDEKELG 231
>sp|Q54VJ9|DPS1_DICDI Decaprenyl-diphosphate synthase OS=Dictyostelium discoideum GN=coq1
PE=3 SV=1
Length = 456
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 175 VLAGRIMEINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKC 234
++ G M+ S G VS L+ G LI S ++ G I ++GK
Sbjct: 281 LVEGEFMQAKSNGV-VSFDNYLQKTYLKTGSLITNSCRSAAILSGADSNIINISTEFGKN 339
Query: 235 VGLAYQVWDDILDNMKKKKEAGDDEATYPKL-MGVAGA 271
+GLA+Q+ DD+LD +E G +AT L +G+A A
Sbjct: 340 LGLAFQIVDDLLDYTGSAEECG--KATSVDLTLGLATA 375
>sp|Q75HZ9|SPS2_ORYSJ Solanesyl-diphosphate synthase 2, chloroplastic OS=Oryza sativa
subsp. japonica GN=SPS2 PE=1 SV=2
Length = 403
Score = 40.0 bits (92), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%)
Query: 189 DVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDN 248
DV+L + + L+ +S + G S E++ +YG+ +GL++QV DDILD
Sbjct: 241 DVTLDDYLLKSYYKTASLLASSTRSAAIFSGVSTTICEQMYEYGRNLGLSFQVVDDILDF 300
Query: 249 MKKKKEAG 256
+ ++ G
Sbjct: 301 TQSAEQLG 308
>sp|P0A5H8|EFPP_MYCTU (2E,6E)-farnesyl diphosphate synthase OS=Mycobacterium tuberculosis
GN=Rv3398c PE=1 SV=1
Length = 359
Score = 40.0 bits (92), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 18/144 (12%)
Query: 160 VRAIGEISSAVGTRGVLAGRIMEINSKGK-DVSLSELDFIKRLRCGKLIEASVVCGVLIG 218
+RAI E TR ++ G+ + + + DV+L E + + L+ AS G L+
Sbjct: 163 LRAISE-----ATRELIRGQAADTAFESRTDVALDECLKMAEGKTAALMAASAEVGALLA 217
Query: 219 GGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGDD------------EATYPKLM 266
G E L YG+ +GLA+Q+ DD+L + + G T+
Sbjct: 218 GAPRSVREALVAYGRHIGLAFQLVDDLLGIWGRPEITGKPVYSDLRSRKKTLPVTWTVAH 277
Query: 267 GVAGAKRYAKELVAEANQELAYFD 290
G + +R A LV E + A D
Sbjct: 278 GGSAGRRLAAWLVDETGSQTASDD 301
>sp|P0A5H9|EFPP_MYCBO (2E,6E)-farnesyl diphosphate synthase OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=Mb3431c PE=3 SV=1
Length = 359
Score = 40.0 bits (92), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 18/144 (12%)
Query: 160 VRAIGEISSAVGTRGVLAGRIMEINSKGK-DVSLSELDFIKRLRCGKLIEASVVCGVLIG 218
+RAI E TR ++ G+ + + + DV+L E + + L+ AS G L+
Sbjct: 163 LRAISE-----ATRELIRGQAADTAFESRTDVALDECLKMAEGKTAALMAASAEVGALLA 217
Query: 219 GGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGDD------------EATYPKLM 266
G E L YG+ +GLA+Q+ DD+L + + G T+
Sbjct: 218 GAPRSVREALVAYGRHIGLAFQLVDDLLGIWGRPEITGKPVYSDLRSRKKTLPVTWTVAH 277
Query: 267 GVAGAKRYAKELVAEANQELAYFD 290
G + +R A LV E + A D
Sbjct: 278 GGSAGRRLAAWLVDETGSQTASDD 301
>sp|P18900|COQ1_YEAST Hexaprenyl pyrophosphate synthase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=COQ1 PE=1
SV=1
Length = 473
Score = 39.3 bits (90), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 201 LRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGDDEA 260
L+ LI S C ++ G S I++ +G+ +G+ +Q+ DD+LD K+ G
Sbjct: 322 LKTAALISKSCRCAAILSGASPAVIDECYDFGRNLGICFQLVDDMLDFTVSGKDLGKPSG 381
Query: 261 TYPKLMGVAGA 271
KL G+A A
Sbjct: 382 ADLKL-GIATA 391
>sp|Q3IPL1|GFPS_NATPD Geranylfarnesyl diphosphate synthase OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=idsA3 PE=1 SV=1
Length = 341
Score = 39.3 bits (90), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 157 DRLVRAIGEISSAVGTRGVLAGRIMEINSKGK-DVSLSELDFIKRLRCGKLIEASVVCGV 215
+R V A+ E+++ + G+ ++++ + + DV+ E + + L A+
Sbjct: 149 ERSVEALDELATTCTE--ICEGQALDVDFENRSDVTTEEYLEMVEFKTAVLYAAAASIPA 206
Query: 216 LIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG 256
++ G +E +E L YG +G A+Q+ DD+LD E G
Sbjct: 207 ILLGSDDETVEALHGYGLDIGRAFQIQDDLLDLTAPSDELG 247
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,940,917
Number of Sequences: 539616
Number of extensions: 4701404
Number of successful extensions: 14484
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 14337
Number of HSP's gapped (non-prelim): 111
length of query: 309
length of database: 191,569,459
effective HSP length: 117
effective length of query: 192
effective length of database: 128,434,387
effective search space: 24659402304
effective search space used: 24659402304
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)