Query 021668
Match_columns 309
No_of_seqs 192 out of 1553
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 07:31:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021668.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021668hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f62_A Geranyltranstransferase 100.0 2.5E-52 8.6E-57 394.8 27.2 243 61-309 3-295 (317)
2 3ts7_A Geranyltranstransferase 100.0 3.3E-52 1.1E-56 395.1 27.3 246 59-309 5-302 (324)
3 3lsn_A Geranyltranstransferase 100.0 8.4E-52 2.9E-56 389.6 28.0 244 61-309 1-296 (304)
4 3lom_A Geranyltranstransferase 100.0 4.7E-51 1.6E-55 385.8 24.3 240 63-308 9-302 (313)
5 2h8o_A Geranyltranstransferase 100.0 2E-50 6.9E-55 384.7 24.9 244 61-309 37-335 (335)
6 3m0g_A Farnesyl diphosphate sy 100.0 7.3E-51 2.5E-55 382.1 21.2 239 61-309 1-289 (297)
7 3p8r_A Geranyltranstransferase 100.0 9.2E-51 3.1E-55 382.3 21.4 240 67-309 13-302 (302)
8 3llw_A Geranyltranstransferase 100.0 3E-50 1E-54 380.0 24.9 244 58-308 3-304 (311)
9 3p8l_A Geranyltranstransferase 100.0 2.8E-50 9.4E-55 378.9 24.0 235 67-307 14-302 (302)
10 1rtr_A Geranyltranstransferase 100.0 9.1E-50 3.1E-54 375.5 27.2 235 70-309 9-293 (301)
11 3uca_A Geranyltranstransferase 100.0 2.1E-50 7.2E-55 382.7 22.7 237 66-309 36-324 (324)
12 1rqj_A Geranyltranstransferase 100.0 6.1E-50 2.1E-54 376.3 23.7 245 61-309 1-299 (299)
13 3pde_A Farnesyl-diphosphate sy 100.0 1.3E-50 4.5E-55 381.9 18.3 241 62-309 7-300 (309)
14 2j1p_A Geranylgeranyl pyrophos 100.0 5.7E-49 1.9E-53 368.8 24.6 240 62-309 12-293 (293)
15 3npk_A Geranyltranstransferase 100.0 1.4E-47 4.8E-52 358.7 23.4 230 71-306 6-284 (291)
16 3oyr_A Trans-isoprenyl diphosp 100.0 1.7E-47 5.8E-52 365.9 23.9 236 60-308 24-344 (345)
17 3ipi_A Geranyltranstransferase 100.0 1.3E-47 4.5E-52 359.6 19.6 209 88-308 34-283 (295)
18 3mzv_A Decaprenyl diphosphate 100.0 1.5E-46 5E-51 359.1 25.4 239 60-309 11-333 (341)
19 1wy0_A Geranylgeranyl pyrophos 100.0 1.6E-46 5.6E-51 358.9 23.9 241 63-309 7-342 (342)
20 3lmd_A Geranylgeranyl pyrophos 100.0 1.8E-46 6E-51 360.5 24.2 239 57-309 30-352 (360)
21 4dhd_A Polyprenyl synthetase; 100.0 5.5E-46 1.9E-50 357.2 25.3 234 62-309 5-336 (358)
22 3nf2_A Putative polyprenyl syn 100.0 6.4E-46 2.2E-50 356.0 25.3 238 62-309 4-344 (352)
23 3rmg_A Octaprenyl-diphosphate 100.0 7.8E-46 2.7E-50 353.2 25.7 234 62-309 8-326 (334)
24 2ftz_A Geranyltranstransferase 100.0 6.1E-46 2.1E-50 346.7 19.6 205 88-307 38-284 (284)
25 3pko_A Geranylgeranyl pyrophos 100.0 1.8E-45 6.2E-50 350.7 22.3 237 62-309 16-334 (334)
26 3aqb_B Component B of hexapren 100.0 5.7E-45 2E-49 346.1 24.0 235 62-309 5-325 (325)
27 3apz_A Geranyl diphosphate syn 100.0 6.9E-45 2.4E-49 348.5 20.4 232 67-309 14-348 (348)
28 3lk5_A Geranylgeranyl pyrophos 100.0 2.2E-43 7.7E-48 341.4 23.2 215 88-308 54-372 (380)
29 1wmw_A Geranylgeranyl diphosph 100.0 1.5E-43 5E-48 337.1 21.3 212 88-309 31-330 (330)
30 2azj_A Geranylgeranyl pyrophos 100.0 2E-43 6.7E-48 330.5 21.0 228 59-308 7-280 (289)
31 2qis_A Farnesyl pyrophosphate 100.0 4.4E-42 1.5E-46 331.9 24.4 240 61-309 33-374 (374)
32 3tc1_A Octaprenyl pyrophosphat 100.0 7.4E-43 2.5E-47 330.2 18.5 203 88-305 27-307 (315)
33 1yhl_A Farnesyl pyrophosphate 100.0 3.5E-42 1.2E-46 331.3 20.8 239 62-309 3-362 (362)
34 1v4e_A Octoprenyl-diphosphate 100.0 9.1E-42 3.1E-46 320.7 22.0 188 88-290 32-286 (299)
35 1uby_A FPS, farnesyl diphospha 100.0 2.6E-41 8.8E-46 325.8 23.9 239 62-309 27-367 (367)
36 2e8v_A Geranylgeranyl pyrophos 100.0 8.7E-42 3E-46 326.1 19.5 212 88-306 32-339 (340)
37 3kra_B Geranyl diphosphate syn 100.0 7E-42 2.4E-46 317.8 17.8 215 64-301 2-258 (274)
38 2ihi_A Pyrophosphate synthase; 100.0 2.1E-41 7.3E-46 328.9 19.6 240 61-308 34-395 (395)
39 3dyh_A Farnesyl pyrophosphate 100.0 3.8E-41 1.3E-45 326.8 20.5 215 88-309 62-390 (390)
40 2q80_A Geranylgeranyl pyrophos 100.0 3.6E-41 1.2E-45 316.9 18.3 205 88-309 17-297 (301)
41 3mav_A Farnesyl pyrophosphate 100.0 1.4E-40 4.6E-45 323.6 22.7 240 57-307 30-390 (395)
42 3qkc_B Geranyl diphosphate syn 100.0 2E-40 6.9E-45 307.9 22.9 218 62-304 5-259 (273)
43 2q58_A Fragment, farnesyl pyro 100.0 8E-40 2.7E-44 315.5 12.8 241 62-308 27-359 (368)
44 2her_A Fragment, farnesyl pyro 100.0 3.3E-39 1.1E-43 310.6 13.6 211 88-307 64-354 (368)
45 4fp4_A Polyprenyl synthetase; 100.0 9.3E-38 3.2E-42 291.0 13.1 206 63-308 6-252 (285)
46 3vj8_A Squalene synthase; farn 91.9 1.9 6.4E-05 40.5 12.4 113 173-291 121-255 (343)
47 3acx_A Dehydrosqualene synthas 90.2 2.4 8.2E-05 38.5 11.1 112 173-294 111-244 (293)
48 4hd1_A Squalene synthase HPNC; 90.1 2.4 8.3E-05 38.6 11.1 108 173-291 107-236 (294)
49 3kb9_A EPI-isozizaene synthase 77.2 41 0.0014 31.3 13.5 112 173-288 187-310 (382)
50 1ps1_A Pentalenene synthase; a 75.7 34 0.0012 30.9 12.2 112 173-288 144-268 (337)
51 1di1_A Aristolochene synthase; 71.5 53 0.0018 28.9 14.1 98 189-287 151-261 (300)
52 3bny_A Aristolochene synthase; 65.6 45 0.0015 29.8 10.5 96 189-285 165-273 (320)
53 3v1v_A 2-MIB synthase, 2-methy 62.3 14 0.00049 35.5 6.8 109 173-284 265-384 (433)
54 3g4d_A (+)-delta-cadinene synt 56.5 66 0.0022 32.0 10.5 109 173-287 376-499 (554)
55 3n0f_A Isoprene synthase; terp 52.6 87 0.003 31.1 10.7 109 174-287 375-497 (555)
56 4fp4_A Polyprenyl synthetase; 48.5 86 0.0029 28.3 9.2 66 221-290 66-131 (285)
57 3mzv_A Decaprenyl diphosphate 45.6 1.2E+02 0.004 28.0 9.9 76 211-290 61-136 (341)
58 3m00_A Aristolochene synthase; 41.7 1.2E+02 0.004 30.2 9.6 108 174-287 373-494 (550)
59 3rmg_A Octaprenyl-diphosphate 41.2 1.6E+02 0.0054 27.0 10.0 73 214-290 58-130 (334)
60 2ong_A 4S-limonene synthase; m 40.5 1.6E+02 0.0055 28.9 10.5 110 174-288 366-489 (543)
61 2ftz_A Geranyltranstransferase 39.7 1.9E+02 0.0065 25.9 10.1 69 218-290 61-131 (284)
62 3nf2_A Putative polyprenyl syn 38.1 1.1E+02 0.0038 28.3 8.4 77 211-291 62-138 (352)
63 3aqb_B Component B of hexapren 37.2 2E+02 0.0068 26.1 9.9 75 212-290 53-127 (325)
64 3pko_A Geranylgeranyl pyrophos 35.2 2.2E+02 0.0075 26.0 9.9 72 214-289 66-138 (334)
65 2q80_A Geranylgeranyl pyrophos 32.7 2.7E+02 0.0093 24.9 10.5 68 219-290 41-108 (301)
66 3kra_B Geranyl diphosphate syn 32.3 1.6E+02 0.0054 26.2 8.2 75 213-290 50-124 (274)
67 3lmd_A Geranylgeranyl pyrophos 29.2 1.3E+02 0.0046 27.9 7.4 74 213-290 84-158 (360)
68 3oyr_A Trans-isoprenyl diphosp 28.3 1.9E+02 0.0064 26.7 8.2 76 211-290 73-148 (345)
69 1n1b_A (+)-bornyl diphosphate 27.8 1.4E+02 0.0048 29.4 7.6 112 174-288 372-496 (549)
70 1v4e_A Octoprenyl-diphosphate 27.3 3E+02 0.01 24.7 9.2 65 221-289 59-123 (299)
71 2azj_A Geranylgeranyl pyrophos 26.7 2.1E+02 0.0072 25.6 8.1 84 203-290 48-133 (289)
72 3ipi_A Geranyltranstransferase 26.6 1.1E+02 0.0036 27.8 6.0 65 221-289 60-124 (295)
73 3qkc_B Geranyl diphosphate syn 26.4 2.3E+02 0.0078 25.1 8.2 74 211-289 53-126 (273)
74 4dhd_A Polyprenyl synthetase; 26.2 1.7E+02 0.0059 27.0 7.6 64 221-288 63-126 (358)
75 3lsn_A Geranyltranstransferase 23.9 4E+02 0.014 24.0 9.6 74 213-290 54-129 (304)
76 1wy0_A Geranylgeranyl pyrophos 23.7 2.4E+02 0.0083 25.6 8.1 72 214-289 57-128 (342)
77 3m0g_A Farnesyl diphosphate sy 23.5 4E+02 0.014 23.8 10.7 73 213-289 51-125 (297)
78 2e8v_A Geranylgeranyl pyrophos 22.4 4.4E+02 0.015 23.9 11.1 69 219-291 56-124 (340)
79 3p5p_A Taxadiene synthase; cla 22.0 2.5E+02 0.0087 28.9 8.4 109 174-288 577-701 (764)
80 3pde_A Farnesyl-diphosphate sy 21.2 4.6E+02 0.016 23.7 9.7 68 218-289 63-134 (309)
81 3ts7_A Geranyltranstransferase 20.9 4E+02 0.014 24.2 8.9 71 216-290 63-135 (324)
82 3p8l_A Geranyltranstransferase 20.2 4.7E+02 0.016 23.4 9.6 62 224-289 72-135 (302)
83 4f62_A Geranyltranstransferase 20.2 4.9E+02 0.017 23.6 10.3 67 219-289 61-129 (317)
84 1wmw_A Geranylgeranyl diphosph 20.0 4.8E+02 0.017 23.5 11.1 74 212-289 48-121 (330)
No 1
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=100.00 E-value=2.5e-52 Score=394.84 Aligned_cols=243 Identities=30% Similarity=0.533 Sum_probs=215.9
Q ss_pred hhHHHHHHHHHHHHHHHHhccCCccc-----c----cccccCCCCCCcchHHHHHHHHHHHhCCCchhhhhHHHHHHHHH
Q 021668 61 IQIDEYMTLKAKKINKALFEGAAVPL-----I----LQYPTLPNHEGERVHGTLCIASCELVGGNESSVMPLACAAEMLV 131 (309)
Q Consensus 61 ~~~~~~l~~~~~~i~~~l~~~~~~~~-----~----~~y~l~~~~gGKrlRP~L~ll~~~~~g~~~~~~~~~AaaiEliH 131 (309)
|++.+++++....||+.|++ .++. . ++|.+.. ||||+||.|++++++++|++.+.++++|++|||||
T Consensus 3 m~~~~~l~~~~~~ve~~L~~--~l~~~~~~~~l~~a~~y~~~~--gGKrlRp~Lvl~~~~~~g~~~~~~~~~A~avEliH 78 (317)
T 4f62_A 3 MNLKQFSTYTQSRVDQYLEQ--QLSDYAPANQLHNAMRYSLFN--GGKRIRPMLTYASAQLVGDISSLTDASAAALESIH 78 (317)
T ss_dssp CCHHHHHHHHHHHHHHHHHH--HSCCCGGGHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH--HhcccCCcHHHHHHHHHHHhC--CCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 56889999999999999998 4431 1 8999988 99999999999999999999999999999999999
Q ss_pred HhhH--------------------------------HHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHhccccchhhh
Q 021668 132 TLAL--------------------------------NRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGR 179 (309)
Q Consensus 132 ~aSL--------------------------------GD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~la~~~G~~~~~~GQ 179 (309)
+||| ||+|++.||+++++. .+.++...++++..+++++|..+||.||
T Consensus 79 ~aSLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~-~~~~~~~~~~~i~~la~a~g~~~m~~GQ 157 (317)
T 4f62_A 79 AYSLIHDDLPAMDNDELRRGKPTCHIQFDEATAILAGDALQTFAFELLSNP-TSAQPELAIKLIQELVVASGRNGMITGQ 157 (317)
T ss_dssp HHHHHHHHSTTSCC-------CCHHHHSCHHHHHHHHHHHHHHHHHHHTCT-TCCCHHHHHHHHHHHHHHHSTTTHHHHH
T ss_pred HHHHHHCCcccccCCCCcCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHhhhhHHHhH
Confidence 9999 999999999999986 3456667788999999999888999999
Q ss_pred HHHhhhCCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcC--
Q 021668 180 IMEINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIGG-GSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG-- 256 (309)
Q Consensus 180 ~~Dl~~~~~~~s~~~~~~i~~~KTg~Lf~~a~~~Gailag-~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G-- 256 (309)
.+|+.+.++.+++++|.+|+++|||+||++||++|++++| ++++.++.+++||+++|+||||+||++|++++++.+|
T Consensus 158 ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~ 237 (317)
T 4f62_A 158 MIDLSSENKNISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKT 237 (317)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred HHHHhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHhhCCC
Confidence 9999998778899999999999999999999999999999 8999999999999999999999999999999998887
Q ss_pred ------CCCchhhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhccC
Q 021668 257 ------DDEATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHLADFLVSRHK 309 (309)
Q Consensus 257 ------~gK~T~p~l~gle~A~~~a~~~~~~A~~~L~~l~~~~~~~L~~l~~~l~~R~~ 309 (309)
+||.|||+++|+++|++.+++|.++|++.|+.||. .++.|.+|++|+++|++
T Consensus 238 ~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~-~~~~L~~l~~~~~~R~~ 295 (317)
T 4f62_A 238 QFSDAEANKATYPKLLGLDGAKALVVRLHEQAIAQISEFGD-KSQPLTDLANYIIDRNH 295 (317)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGGG-GGHHHHHHHHHHHC---
T ss_pred cchHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhcc
Confidence 79999999999999999999999999999999975 67899999999999974
No 2
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=100.00 E-value=3.3e-52 Score=395.07 Aligned_cols=246 Identities=30% Similarity=0.517 Sum_probs=221.2
Q ss_pred chhhHHHHHHHHHHHHHHHHhccCCccc------c----cccccCCCCCCcchHHHHHHHHHHHhCCCchhhhhHHHHHH
Q 021668 59 PEIQIDEYMTLKAKKINKALFEGAAVPL------I----LQYPTLPNHEGERVHGTLCIASCELVGGNESSVMPLACAAE 128 (309)
Q Consensus 59 ~~~~~~~~l~~~~~~i~~~l~~~~~~~~------~----~~y~l~~~~gGKrlRP~L~ll~~~~~g~~~~~~~~~AaaiE 128 (309)
+.+++..++++....||+.|.+ .++. . ++|.+.. ||||+||.|++++++++|++.+.++++|++||
T Consensus 5 ~~~~~~~~l~~~~~~ve~~L~~--~l~~~~~~~~~l~~a~~y~~~~--gGKrlRP~L~l~~~~~~g~~~~~~~~~A~avE 80 (324)
T 3ts7_A 5 PERSLSDFMRSSQERVERALDA--RLPAADRMPERLHQAMRYSVLG--GGKRMRPLLTYATGQTIGVAADLLDGPACAVE 80 (324)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHH--TSCCTTSSSHHHHHHHHHHHHS--CCCCHHHHHHHHHHHHHTCCGGGTHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH--HhhhccCCcHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4457899999999999999999 5532 1 8999988 99999999999999999999999999999999
Q ss_pred HHHHhhH--------------------------------HHHHHHHHHHHHHhcc-CCCChHHHHHHHHHHHHHhccccc
Q 021668 129 MLVTLAL--------------------------------NRALLCYAVEHMATKT-KNVSPDRLVRAIGEISSAVGTRGV 175 (309)
Q Consensus 129 liH~aSL--------------------------------GD~Ll~~Af~~l~~~~-~~~~~~~~~~~~~~la~~~G~~~~ 175 (309)
|||+||| ||+|++.||+++++.. .+.+++..++++..+++++|..+|
T Consensus 81 liH~aSLIHDDip~mD~~~~RRG~pt~h~~~G~~~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m 160 (324)
T 3ts7_A 81 FIHVYSLIHDDLPAMDDDDLRRGKPTCHKAYDEATAILAGDGLQALAFHVLAQDPSIAVPAENRIAMIETLAKASGPAGM 160 (324)
T ss_dssp HHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHHSTTTH
T ss_pred HHHHHHHhhcCcccccCCCccCCCCchhhhcChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhhhHH
Confidence 9999999 9999999999999863 245566778899999999888999
Q ss_pred hhhhHHHhhhCCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchh
Q 021668 176 LAGRIMEINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIGG-GSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKE 254 (309)
Q Consensus 176 ~~GQ~~Dl~~~~~~~s~~~~~~i~~~KTg~Lf~~a~~~Gailag-~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~ 254 (309)
|.||.+|+.+.++++++++|.+|+++|||+||++||++|++++| ++++.++.+++||+++|+||||+||++|++++++.
T Consensus 161 ~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~~d~~~ 240 (324)
T 3ts7_A 161 VGGQAIDLASVGKKLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESDTQT 240 (324)
T ss_dssp HHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred HHhHHHHHHccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHH
Confidence 99999999998778899999999999999999999999999999 99999999999999999999999999999999988
Q ss_pred cC--------CCCchhhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhccC
Q 021668 255 AG--------DDEATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHLADFLVSRHK 309 (309)
Q Consensus 255 ~G--------~gK~T~p~l~gle~A~~~a~~~~~~A~~~L~~l~~~~~~~L~~l~~~l~~R~~ 309 (309)
+| +||.|||+++|+++|++.+++++++|++.|+.||. .++.|.+|++|+++|++
T Consensus 241 ~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~-~~~~L~~la~~~~~R~~ 302 (324)
T 3ts7_A 241 LGKTRGKDRDHNKPNYPALLGLSGAKEKAEEMHEAALESLAGFGP-EADLLRELARFIIQRQS 302 (324)
T ss_dssp ------------CCCHHHHHCHHHHHHHHHHHHHHHHHTTTTCCG-GGHHHHHHHHHHHHTSS
T ss_pred hCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHhccC
Confidence 87 79999999999999999999999999999999976 47899999999999974
No 3
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=100.00 E-value=8.4e-52 Score=389.59 Aligned_cols=244 Identities=31% Similarity=0.566 Sum_probs=219.6
Q ss_pred hhHHHHHHHHHHHHHHHHhccCCcc------cc----cccccCCCCCCcchHHHHHHHHHHHhCCCchhhhhHHHHHHHH
Q 021668 61 IQIDEYMTLKAKKINKALFEGAAVP------LI----LQYPTLPNHEGERVHGTLCIASCELVGGNESSVMPLACAAEML 130 (309)
Q Consensus 61 ~~~~~~l~~~~~~i~~~l~~~~~~~------~~----~~y~l~~~~gGKrlRP~L~ll~~~~~g~~~~~~~~~AaaiEli 130 (309)
|+|+.|++.+...||+.|.+ .++ .. ++|.+.. ||||+||.|++++++++|++.+.++++|++||||
T Consensus 1 m~~~~~~~~~~~~ve~~l~~--~~~~~~~~~~~l~~~~~y~~~~--gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEli 76 (304)
T 3lsn_A 1 MSLTAYQASSQARVDAAMHT--LFTAPSPELARLYEAMRYSVMN--GGKRVRPLLAYAACEALGGKPEQANGAACAVELI 76 (304)
T ss_dssp -CHHHHHHHHHHHHHHHHHG--GGCCSSGGGHHHHHHHHHHHTT--TCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH--HhhhccCCcHHHHHHHHHHHhC--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 56889999999999999999 543 11 8999988 9999999999999999999999999999999999
Q ss_pred HHhhH--------------------------------HHHHHHHHHHHHHhcc-CCCChHHHHHHHHHHHHHhccccchh
Q 021668 131 VTLAL--------------------------------NRALLCYAVEHMATKT-KNVSPDRLVRAIGEISSAVGTRGVLA 177 (309)
Q Consensus 131 H~aSL--------------------------------GD~Ll~~Af~~l~~~~-~~~~~~~~~~~~~~la~~~G~~~~~~ 177 (309)
|+||| ||+|++.||+++++.. .++++...++++..+++++|..+||.
T Consensus 77 H~asLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~ 156 (304)
T 3lsn_A 77 HAYSLVHDDLPAMDDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSALLDPALSDASAEIRLRMVTTLAQAAGPAGMVG 156 (304)
T ss_dssp HHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHSTTTHHH
T ss_pred HHHHHHHCCcccccCCCccCCCCchHhhcCHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHchhhHhH
Confidence 99999 9999999999999863 24456678889999999998778999
Q ss_pred hhHHHhhhCCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcC
Q 021668 178 GRIMEINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIGGG-SEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG 256 (309)
Q Consensus 178 GQ~~Dl~~~~~~~s~~~~~~i~~~KTg~Lf~~a~~~Gailag~-~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G 256 (309)
||.+|+.+.++.+++++|.+|+++|||+||++||++|++++|+ +++.++.+++||+++|+||||+||++|++++++.+|
T Consensus 157 GQ~lDl~~~~~~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~~~G 236 (304)
T 3lsn_A 157 GQAIDLGSVGLKLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLG 236 (304)
T ss_dssp HHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhC
Confidence 9999999987788999999999999999999999999999999 888999999999999999999999999999998887
Q ss_pred --------CCCchhhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhccC
Q 021668 257 --------DDEATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHLADFLVSRHK 309 (309)
Q Consensus 257 --------~gK~T~p~l~gle~A~~~a~~~~~~A~~~L~~l~~~~~~~L~~l~~~l~~R~~ 309 (309)
+||.|||+++|+++|++.+++++++|++.|+.||. .++.|.+|++|+++|.+
T Consensus 237 K~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~-~~~~L~~l~~~~~~R~~ 296 (304)
T 3lsn_A 237 KRQGADIARDKPTYPALLGLAAAKEYALELRDQALHALRPFDA-AAEPLRELARYIVERRS 296 (304)
T ss_dssp -----------CCHHHHHCHHHHHHHHHHHHHHHHHHTTTSCG-GGHHHHHHHHHHHC---
T ss_pred CCcccHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhcc
Confidence 79999999999999999999999999999999976 68899999999999974
No 4
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=100.00 E-value=4.7e-51 Score=385.81 Aligned_cols=240 Identities=24% Similarity=0.326 Sum_probs=216.3
Q ss_pred HHHHHHHHHHHHHHHHhccCCccc------c----cccccCCCCCCcchHHHHHHHHHHHhCCCchhhhhHHHHHHHHHH
Q 021668 63 IDEYMTLKAKKINKALFEGAAVPL------I----LQYPTLPNHEGERVHGTLCIASCELVGGNESSVMPLACAAEMLVT 132 (309)
Q Consensus 63 ~~~~l~~~~~~i~~~l~~~~~~~~------~----~~y~l~~~~gGKrlRP~L~ll~~~~~g~~~~~~~~~AaaiEliH~ 132 (309)
+..|++++...||+.|.+ .++. . ++|.+.. ||||+||.||+++++++|++.+.++++|++|||||+
T Consensus 9 ~~~~l~~~~~~ve~~L~~--~l~~~~~~~~~l~~~~~y~~~~--gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~ 84 (313)
T 3lom_A 9 NKQVIDKYTQRHELYLEQ--LLNEIIIPAPQIRSALHYALFS--GGKRIRPILVYLAGDLIDVDQGVLDIIAAALELTHC 84 (313)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHTTSCCCCHHHHHHHHHHHCC--SSCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HhhhcCCCcHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 788999999999999998 4431 1 8999988 999999999999999999999999999999999999
Q ss_pred hhH--------------------------------HHHHHHHHHHHHHhccCCCCh-HHHHHHHHHHHHHhccccchhhh
Q 021668 133 LAL--------------------------------NRALLCYAVEHMATKTKNVSP-DRLVRAIGEISSAVGTRGVLAGR 179 (309)
Q Consensus 133 aSL--------------------------------GD~Ll~~Af~~l~~~~~~~~~-~~~~~~~~~la~~~G~~~~~~GQ 179 (309)
||| ||+|++.||+++++...+.++ +..++++..+++++|..+||.||
T Consensus 85 aSLIHDDip~mD~~~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ 164 (313)
T 3lom_A 85 YSLIHDDLPAMDNDDLRRGKPSCHKAFDEATAILVGDGMQALAIEVLLMRLSPLLPAAQVVAITQVLVNASGISGMVSGQ 164 (313)
T ss_dssp HHHHHHHSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSTTTHHHHH
T ss_pred HHHHhCCcccccCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHhHhHHHHhH
Confidence 999 999999999999986434444 56788999999999888999999
Q ss_pred HHHhhhCCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcC
Q 021668 180 IMEINSKGK-DVSLSELDFIKRLRCGKLIEASVVCGVLIGG--GSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG 256 (309)
Q Consensus 180 ~~Dl~~~~~-~~s~~~~~~i~~~KTg~Lf~~a~~~Gailag--~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G 256 (309)
.+|+.+.++ ++++++|.+|+++|||+||++||++ |+++| ++++.++.+++||+++|+||||+||++|++++++.+|
T Consensus 165 ~lDl~~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~a~~~~~~~l~~~g~~lGlaFQI~DDilD~~gd~~~~G 243 (313)
T 3lom_A 165 SLDLSELAKSSVTEEQLREIHLLKTGKLILACFEM-VLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYAPTQILG 243 (313)
T ss_dssp HHHHHTTTSSCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHccCCCCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHhhC
Confidence 999999877 7999999999999999999999999 99999 8999999999999999999999999999999998887
Q ss_pred --------CCCchhhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhcc
Q 021668 257 --------DDEATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHLADFLVSRH 308 (309)
Q Consensus 257 --------~gK~T~p~l~gle~A~~~a~~~~~~A~~~L~~l~~~~~~~L~~l~~~l~~R~ 308 (309)
+||.|||+++|+++|++.+++++++|++.|+.|+. .++.|.+|++|+++|.
T Consensus 244 K~~g~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~-~~~~L~~la~~~~~R~ 302 (313)
T 3lom_A 244 KGRSSDQANQKTTFATLFNKQQLEEEIAVHYQIAMDSLRLFGS-KAAALIELTKQLQNRS 302 (313)
T ss_dssp ----------CCCHHHHSCHHHHHHHHHHHHHHHHHTTTTTGG-GGHHHHHHHHHHHHHH
T ss_pred CCCcchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHhcc
Confidence 79999999999999999999999999999999975 4789999999999996
No 5
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=100.00 E-value=2e-50 Score=384.70 Aligned_cols=244 Identities=25% Similarity=0.379 Sum_probs=213.6
Q ss_pred hhHHHHHHHHHHHHHHHHhccCCccc-----------c----cccccCCCCCCcchHHHHHHHHHHHhCCCchhhhhHHH
Q 021668 61 IQIDEYMTLKAKKINKALFEGAAVPL-----------I----LQYPTLPNHEGERVHGTLCIASCELVGGNESSVMPLAC 125 (309)
Q Consensus 61 ~~~~~~l~~~~~~i~~~l~~~~~~~~-----------~----~~y~l~~~~gGKrlRP~L~ll~~~~~g~~~~~~~~~Aa 125 (309)
.++.+++++....||+.|.+ .++. . ++|.+.. ||||+||.|++++++++|++.+.++++|+
T Consensus 37 ~~~~~~l~~~~~~ve~~L~~--~l~~~~~~~~~~~~~~l~~~~~y~~~~--gGKrlRP~L~l~~~~~~g~~~~~~~~~A~ 112 (335)
T 2h8o_A 37 TNFETRLRENAAKTEALLGH--LLSGEARADEITRPQNLLEAMRHGVLN--GGKRLRPFLVIESVALLGGDAEAGLHVGA 112 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HTCSSCCTTCCCCCHHHHHHHHHHHHT--SCSCHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHhhhccccccCCcHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 46778888888899999988 3321 1 8899888 99999999999999999998888999999
Q ss_pred HHHHHHHhhH--------------------------------HHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHhccc
Q 021668 126 AAEMLVTLAL--------------------------------NRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTR 173 (309)
Q Consensus 126 aiEliH~aSL--------------------------------GD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~la~~~G~~ 173 (309)
+|||||+||| ||+|++.||+++++...+++++...+++..+++++|..
T Consensus 113 aiEliH~asLIHDDiPamD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~ls~a~g~~ 192 (335)
T 2h8o_A 113 ALECLHCYSLVHDDLPAMDDDDLRRGQPTVHRKFDEATAILAGDSLLTLAFDIIASDDNPLAAERKAALVISLARAAGIG 192 (335)
T ss_dssp HHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHSTTSCSCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHCCchhccCCCcCCCCCcHhhhcChHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHhhhh
Confidence 9999999999 99999999999998632456667788999999999989
Q ss_pred cchhhhHHHhhhCCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccch
Q 021668 174 GVLAGRIMEINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKK 253 (309)
Q Consensus 174 ~~~~GQ~~Dl~~~~~~~s~~~~~~i~~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~ 253 (309)
+|++||++|+.+.++++++++|.+|+++|||+||++||++|++++|++++.++.+++||+++|+||||+||++|+++|++
T Consensus 193 ~~~~GQ~lDl~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~ 272 (335)
T 2h8o_A 193 GMAGGQALDLAAEKKAPDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADAA 272 (335)
T ss_dssp SHHHHHHHHHHHHHSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 99999999999876678999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcC--------CCCchhhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhccC
Q 021668 254 EAG--------DDEATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHLADFLVSRHK 309 (309)
Q Consensus 254 ~~G--------~gK~T~p~l~gle~A~~~a~~~~~~A~~~L~~l~~~~~~~L~~l~~~l~~R~~ 309 (309)
.+| +||.|||+++|++++++.+++|.++|++.|+.++. .++.|.+|++|+++|.+
T Consensus 273 ~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~~~~~~A~~~L~~l~~-~~~~L~~l~~~i~~R~~ 335 (335)
T 2h8o_A 273 TMGKATGKDAARGKGTLVALRGEAWAREKLQEQVAEASELLAPYGE-KAAILIAAARFIAERKS 335 (335)
T ss_dssp -------------CCCHHHHHCHHHHHHHHHHHHHHHHHHTGGGGG-GGHHHHHHHHHHHC---
T ss_pred HhCCCcchHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhccC
Confidence 877 79999999999999999999999999999999975 67899999999999974
No 6
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=100.00 E-value=7.3e-51 Score=382.07 Aligned_cols=239 Identities=29% Similarity=0.441 Sum_probs=204.3
Q ss_pred hhHHHHHHHHHHHHHHHHhccCCcc----cc----cccccCCCCCCcchHHHHHHHHHHHhCCCchhhhhHHHHHHHHHH
Q 021668 61 IQIDEYMTLKAKKINKALFEGAAVP----LI----LQYPTLPNHEGERVHGTLCIASCELVGGNESSVMPLACAAEMLVT 132 (309)
Q Consensus 61 ~~~~~~l~~~~~~i~~~l~~~~~~~----~~----~~y~l~~~~gGKrlRP~L~ll~~~~~g~~~~~~~~~AaaiEliH~ 132 (309)
|+|.+|++++...||+.|.+ .++ .. ++|. .. ||||+||.|++++++++|++.+.+.++|++|||||+
T Consensus 1 m~~~~~~~~~~~~ve~~l~~--~~~~~~~~~l~~~~~y~-~~--gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~ 75 (297)
T 3m0g_A 1 MSLSERLKEVQDAVETAMAA--AIGRLPAGDLRDAMAYA-AQ--GGKRLRAFLAIESAAIHGISMAQAMPAALAVEALHA 75 (297)
T ss_dssp -CHHHHHHHHHHHHHHHHHH--HHHTSCCSHHHHHHHHH-HS--CSCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH--HhcccCcHHHHHHHHHH-cC--CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 56889999999999999998 543 11 8999 78 999999999999999999999999999999999999
Q ss_pred hhH--------------------------------HHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHhccccchhhhH
Q 021668 133 LAL--------------------------------NRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRI 180 (309)
Q Consensus 133 aSL--------------------------------GD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~la~~~G~~~~~~GQ~ 180 (309)
||| ||+|++.||+++++.... +++..++++..+++++|..+||.||.
T Consensus 76 asLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~-~~~~~~~~~~~l~~~~g~~~~~~GQ~ 154 (297)
T 3m0g_A 76 YSLVHDDMPCMDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTDPVLG-SAENRVALVAALAQASGAEGMVYGQA 154 (297)
T ss_dssp HHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHTTCGGGC-CHHHHHHHHHHHHHHHSTTTHHHHHH
T ss_pred HHHHhcCccccCCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhHhHHHHhHH
Confidence 999 999999999999986322 45667889999999999899999999
Q ss_pred HHhhhC--CCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcC--
Q 021668 181 MEINSK--GKDVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG-- 256 (309)
Q Consensus 181 ~Dl~~~--~~~~s~~~~~~i~~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G-- 256 (309)
+|+.+. +.++++++|.+|+++|||+||++||++|++++|++++ .+++||.++|+||||+||++|++++++.+|
T Consensus 155 lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~ 231 (297)
T 3m0g_A 155 LDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADRG---PLTAYATALGLAFQIADDILDVEGNEEAAGKR 231 (297)
T ss_dssp HHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHTTCC------------
T ss_pred HHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcCCCHH---HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCC
Confidence 999998 5578999999999999999999999999999998876 899999999999999999999999998877
Q ss_pred ------CCCchhhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhccC
Q 021668 257 ------DDEATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHLADFLVSRHK 309 (309)
Q Consensus 257 ------~gK~T~p~l~gle~A~~~a~~~~~~A~~~L~~l~~~~~~~L~~l~~~l~~R~~ 309 (309)
+||.|||+++|+++|++.+++++++|++.|+.|+. ..+.|.+|++|+++|++
T Consensus 232 ~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~~~-~~~~L~~l~~~~~~R~~ 289 (297)
T 3m0g_A 232 LGKDAEAHKATFVSLLGLAGAKSRAADLVAEAEAALAPYGE-AASTLRACARYVIERDK 289 (297)
T ss_dssp ---------CCHHHHHCSSHHHHHHHHHHHHHHHHTGGGGG-GGHHHHHHHHHHTC---
T ss_pred ccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcc
Confidence 79999999999999999999999999999999975 34899999999999974
No 7
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=100.00 E-value=9.2e-51 Score=382.28 Aligned_cols=240 Identities=27% Similarity=0.411 Sum_probs=206.8
Q ss_pred HHHHHHHHHHHHhccC--C--cccc----cccccCCCCCCcchHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHhhH---
Q 021668 67 MTLKAKKINKALFEGA--A--VPLI----LQYPTLPNHEGERVHGTLCIASCELVGGNESSVMPLACAAEMLVTLAL--- 135 (309)
Q Consensus 67 l~~~~~~i~~~l~~~~--~--~~~~----~~y~l~~~~gGKrlRP~L~ll~~~~~g~~~~~~~~~AaaiEliH~aSL--- 135 (309)
+......||+.|.+.+ . .+.. ++|.+.. ||||+||.|++++++++|++.+.++++|++|||||++||
T Consensus 13 ~~~~~~~ve~~l~~~l~~~~~~~~~l~~~~~y~~~~--gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~asLIHD 90 (302)
T 3p8r_A 13 LSSYQQRNNQQLDQWLNRIPFQTLPLIEAMRYGLLL--GGKRARPYLVYITGQMLGCELSDLDTPASAVECIHAYSLIHD 90 (302)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCTTSSHHHHHHHHHHS--CCSCHHHHHHHHHHHTTTCCGGGTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 4555666666666521 1 1111 8999988 999999999999999999999999999999999999999
Q ss_pred -----------------------------HHHHHHHHHHHHHhcc-CCCChHHHHHHHHHHHHHhccccchhhhHHHhhh
Q 021668 136 -----------------------------NRALLCYAVEHMATKT-KNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINS 185 (309)
Q Consensus 136 -----------------------------GD~Ll~~Af~~l~~~~-~~~~~~~~~~~~~~la~~~G~~~~~~GQ~~Dl~~ 185 (309)
||+|++.||+++++.. .+.+++..++++..+++++|..+||.||.+|+.+
T Consensus 91 DIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~ 170 (302)
T 3p8r_A 91 DLPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQALAEASGAQGMCLGQALDLAA 170 (302)
T ss_dssp TCHHHHCCC--------------HHHHHHHHHHHHHHHHHHHHSCCCHHHHTTHHHHHHHHHHHHSTTTHHHHHHHHHHT
T ss_pred CcccccCCCcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhHhHHHHhHHHHHHc
Confidence 9999999999999863 1222334678889999998888999999999999
Q ss_pred CCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcC--------
Q 021668 186 KGKDVSLSELDFIKRLRCGKLIEASVVCGVLIGG-GSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG-------- 256 (309)
Q Consensus 186 ~~~~~s~~~~~~i~~~KTg~Lf~~a~~~Gailag-~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G-------- 256 (309)
.+.++++++|.+|+++|||+||++||++|++++| ++++.++.+++||+++|+||||+||++|++++++.+|
T Consensus 171 ~~~~~s~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~ 250 (302)
T 3p8r_A 171 ENRLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQE 250 (302)
T ss_dssp TTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC-------------
T ss_pred cCCCCCHHHHHHHhccCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHHh
Confidence 8768899999999999999999999999999999 8888899999999999999999999999999998877
Q ss_pred CCCchhhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhccC
Q 021668 257 DDEATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHLADFLVSRHK 309 (309)
Q Consensus 257 ~gK~T~p~l~gle~A~~~a~~~~~~A~~~L~~l~~~~~~~L~~l~~~l~~R~~ 309 (309)
+||.|||+++|+++|++.+++|+++|++.|+.||. .++.|.+|++|+++|++
T Consensus 251 egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~-~~~~L~~l~~~~~~R~~ 302 (302)
T 3p8r_A 251 LNKSTYPALLGLEGAQQKAHTLLQEALLALEAIPY-NTEHLEEFARYVVERKN 302 (302)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS-CTHHHHHHHHHHHHCCC
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHhccC
Confidence 79999999999999999999999999999999976 47899999999999975
No 8
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=100.00 E-value=3e-50 Score=380.02 Aligned_cols=244 Identities=24% Similarity=0.381 Sum_probs=215.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHhccCCccc------c----cccccCCCCCCcchHHHHHHHHHHHhCCCc------hhhh
Q 021668 58 FPEIQIDEYMTLKAKKINKALFEGAAVPL------I----LQYPTLPNHEGERVHGTLCIASCELVGGNE------SSVM 121 (309)
Q Consensus 58 ~~~~~~~~~l~~~~~~i~~~l~~~~~~~~------~----~~y~l~~~~gGKrlRP~L~ll~~~~~g~~~------~~~~ 121 (309)
...|+++.|++++.. ||+.|++ .++. . ++|.+.. ||||+||.|++++++++|++. +.++
T Consensus 3 ~~~~~~~~~~~~~~~-ve~~l~~--~~~~~~~~~~~l~~a~~y~~~~--gGKrlRp~Lvl~~~~~~g~~~~~~~~~~~~~ 77 (311)
T 3llw_A 3 LSSPNLSFYYNECER-FESFLKN--HHLHLESFHPYLEKAFFEMVLN--GGKRFRPKLFLAVLCALVGQKDYSNQQTEYF 77 (311)
T ss_dssp CCCHHHHHHHHHHHH-HHHHHHT--CCCCCCSSCSSHHHHHHHHHHS--CCCCHHHHHHHHHHHHHSCHHHHHHSHHHHH
T ss_pred CccccHHHHHHHHHH-HHHHHHH--HhhhccCCcHHHHHHHHHHhhC--CCCchHHHHHHHHHHHhCCCcccccchHHHH
Confidence 345789999999998 9999999 5531 1 8999988 999999999999999999988 8899
Q ss_pred hHHHHHHHHHHhhH--------------------------------HHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Q 021668 122 PLACAAEMLVTLAL--------------------------------NRALLCYAVEHMATKTKNVSPDRLVRAIGEISSA 169 (309)
Q Consensus 122 ~~AaaiEliH~aSL--------------------------------GD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~la~~ 169 (309)
++|++|||||+||| ||+|++.||+++++. .++++..++++..++++
T Consensus 78 ~~A~aiEliH~aSLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~--~~~~~~~~~~i~~la~a 155 (311)
T 3llw_A 78 KIALSIECLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNA--LLESHIIVELIKILSAN 155 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHHS--CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCccccCCCcccCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHH
Confidence 99999999999999 999999999999983 34566778899999999
Q ss_pred hccccchhhhHHHhhhCCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHhchhhh
Q 021668 170 VGTRGVLAGRIMEINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDI-EKLRKYGKCVGLAYQVWDDILDN 248 (309)
Q Consensus 170 ~G~~~~~~GQ~~Dl~~~~~~~s~~~~~~i~~~KTg~Lf~~a~~~Gailag~~~~~~-~~l~~~G~~lGlAFQI~DDiLD~ 248 (309)
+|..+||.||.+|+.+.+..+++++|.+|+++|||+||++||++|++++|++++.+ +.+++||.++|+||||+||++|+
T Consensus 156 ~g~~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~lga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~ 235 (311)
T 3llw_A 156 GGIKGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDV 235 (311)
T ss_dssp HSTTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHhcCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88899999999999998668899999999999999999999999999999999888 99999999999999999999999
Q ss_pred cccchhcC------CCCchhhhhhhHHHHHHHHHHHHHHHHHHhccCCC--CC-HHHHHHHHHHHHhcc
Q 021668 249 MKKKKEAG------DDEATYPKLMGVAGAKRYAKELVAEANQELAYFDP--TR-AAPLYHLADFLVSRH 308 (309)
Q Consensus 249 ~~~~~~~G------~gK~T~p~l~gle~A~~~a~~~~~~A~~~L~~l~~--~~-~~~L~~l~~~l~~R~ 308 (309)
++|++.+| +||.|||+++|++.|++.+++++++|.+.|+.|+. .. .+.|.+|++|+++|.
T Consensus 236 ~gd~~~~GK~~g~~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~l~~~~~~r~ 304 (311)
T 3llw_A 236 TQDEEESGKTTHLDSAKNSFVNLLGLERANNYAQTLKTEVLNDLDALKPAYPLLQENLNALLNTLFKGE 304 (311)
T ss_dssp HC-------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTTCHHHHHHHHHHHHHHHC--
T ss_pred cCChHHHCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccHHHHHHHHHHHHHhcc
Confidence 99998888 79999999999999999999999999999999532 23 679999999999996
No 9
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=100.00 E-value=2.8e-50 Score=378.86 Aligned_cols=235 Identities=24% Similarity=0.384 Sum_probs=205.1
Q ss_pred HHHHHHHHHHHHhccCCcc-----c----ccccccCCCCCCcchHHHHHHHHHHHhCCCch-hhhhHHHHHHHHHHhhH-
Q 021668 67 MTLKAKKINKALFEGAAVP-----L----ILQYPTLPNHEGERVHGTLCIASCELVGGNES-SVMPLACAAEMLVTLAL- 135 (309)
Q Consensus 67 l~~~~~~i~~~l~~~~~~~-----~----~~~y~l~~~~gGKrlRP~L~ll~~~~~g~~~~-~~~~~AaaiEliH~aSL- 135 (309)
-+.+...||+.|.+ .++ . .++|.+.. ||||+||.|++++++++|++.+ .++++|++|||||+|||
T Consensus 14 ~~~~~~~ve~~l~~--~l~~~~~~~~l~~~~~y~~~~--gGKrlRp~L~l~~~~~~g~~~~~~~~~~A~avEliH~asLI 89 (302)
T 3p8l_A 14 SQQHLPLVEKVMVD--FIAEYTENERLKEAMLYSIHA--GGKRLRPLLVLTTVAAFQKEMETQDYQVAASLEMIHTYSLI 89 (302)
T ss_dssp HHHHHHHHHHHHHH--HHHHSCCCHHHHHHHHHHHHT--CCCCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH--HhhccCCcHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHH
Confidence 34455566666655 332 1 18999988 9999999999999999999988 89999999999999999
Q ss_pred -------------------------------HHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHhccccchhhhHHHhh
Q 021668 136 -------------------------------NRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEIN 184 (309)
Q Consensus 136 -------------------------------GD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~la~~~G~~~~~~GQ~~Dl~ 184 (309)
||+|++.||+++++. +.+++..++++..+++++|..+||.||.+|+.
T Consensus 90 HDDIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~--~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~ 167 (302)
T 3p8l_A 90 HDDLPAMDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQLLSLS--QLGLSEKVLLMQQLAKAAGNQGMVSGQMGDIE 167 (302)
T ss_dssp HHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTS--SCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHH
T ss_pred HCCchhccCCCccCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 999999999999984 34666778899999999988899999999999
Q ss_pred hCCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcC--------
Q 021668 185 SKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG-------- 256 (309)
Q Consensus 185 ~~~~~~s~~~~~~i~~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G-------- 256 (309)
+.+.++++++|.+|+++|||+||++||++|++++|++++.++.+++||+++|+||||+||++|++++++.+|
T Consensus 168 ~~~~~~t~~~y~~i~~~KTg~L~~~~~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~ 247 (302)
T 3p8l_A 168 GEKVSLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEA 247 (302)
T ss_dssp TTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--------------
T ss_pred ccCCCCCHHHHHHHHHcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHh
Confidence 987788999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred CCCchhhhhhhHHHHHHHHHHHHHHHHHHhccCC----CCCHHHHHHHHHHHHhc
Q 021668 257 DDEATYPKLMGVAGAKRYAKELVAEANQELAYFD----PTRAAPLYHLADFLVSR 307 (309)
Q Consensus 257 ~gK~T~p~l~gle~A~~~a~~~~~~A~~~L~~l~----~~~~~~L~~l~~~l~~R 307 (309)
+||.|||+++|+++|++.++++.++|++.|+.|| ++.++.|.+|++|+++|
T Consensus 248 egK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~~~~~~~~~~~~L~~l~~~~~~R 302 (302)
T 3p8l_A 248 LNKSTYPALLGIAGAKDALTHQLAEGSAVLEKIKANVPNFSEEHLANLLTQLQLR 302 (302)
T ss_dssp ---CCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHTSCC
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCChhHHHHHHHHHHHhhC
Confidence 7999999999999999999999999999999994 56889999999999987
No 10
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=100.00 E-value=9.1e-50 Score=375.46 Aligned_cols=235 Identities=24% Similarity=0.396 Sum_probs=210.3
Q ss_pred HHHHHHHHHhccCCccc-----c----cccccCCCCCCcchHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHhhH-----
Q 021668 70 KAKKINKALFEGAAVPL-----I----LQYPTLPNHEGERVHGTLCIASCELVGGNESSVMPLACAAEMLVTLAL----- 135 (309)
Q Consensus 70 ~~~~i~~~l~~~~~~~~-----~----~~y~l~~~~gGKrlRP~L~ll~~~~~g~~~~~~~~~AaaiEliH~aSL----- 135 (309)
+...||+.|.+ .++. . ++|.+.. ||||+||.|++++++++|++.+.++++|++|||||+|||
T Consensus 9 ~~~~v~~~l~~--~l~~~~~~~~l~~~~~y~~~~--gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLiHDDi 84 (301)
T 1rtr_A 9 LIDEVNNELSV--AINKSVMDTQLEESMLYSLNA--GGKRIRPVLLLLTLDSLNTEYELGMKSAIALEMIHTYSLIHDDL 84 (301)
T ss_dssp HHHHHHHHHHT--SSCCCSSCCSHHHHHHHHHTS--CCCCHHHHHHHHHHHHTTSCGGGGHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHH--HhhccCCcHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 66778888888 4421 1 8999988 999999999999999999988888999999999999999
Q ss_pred ---------------------------HHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHhccccchhhhHHHhhhCCC
Q 021668 136 ---------------------------NRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKGK 188 (309)
Q Consensus 136 ---------------------------GD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~la~~~G~~~~~~GQ~~Dl~~~~~ 188 (309)
||+|++.||+++++.. +++++...+++..+++++|..+|++||.+|+.+.++
T Consensus 85 P~~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~-~~~~~~~~~~~~~ls~~~g~~~~~~GQ~~Dl~~~~~ 163 (301)
T 1rtr_A 85 PAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDD-RLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQSEGQ 163 (301)
T ss_dssp TTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTCT-TSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTS
T ss_pred hhccCCCccCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHHHHHhHhHHHHHHHHHHHccCC
Confidence 9999999999999852 345667788999999999989999999999998876
Q ss_pred CCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcC--------CCCc
Q 021668 189 DVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG--------DDEA 260 (309)
Q Consensus 189 ~~s~~~~~~i~~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G--------~gK~ 260 (309)
++++++|.+|+++|||+||++||++|++++|++++.++.+++||.++|+||||+||++|++++++.+| +||.
T Consensus 164 ~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~ 243 (301)
T 1rtr_A 164 PIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKS 243 (301)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------C
T ss_pred CCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999988877 7999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHHHHhccC
Q 021668 261 TYPKLMGVAGAKRYAKELVAEANQELAYFD-PTRAAPLYHLADFLVSRHK 309 (309)
Q Consensus 261 T~p~l~gle~A~~~a~~~~~~A~~~L~~l~-~~~~~~L~~l~~~l~~R~~ 309 (309)
|||+++++++|++.+++|.++|++.|+.|| ++.++.|.+|++|+++|.+
T Consensus 244 T~p~l~al~~a~~~a~~~~~~A~~~L~~l~~~~~~~~L~~l~~~i~~R~~ 293 (301)
T 1rtr_A 244 TYVSLLGKDGAEDKLTYHRDAAVDELTQIDEQFNTKHLLEIVDLFYSRDH 293 (301)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTSCCHHHHHHHHHHHCC--
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999996 4567899999999999974
No 11
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=2.1e-50 Score=382.72 Aligned_cols=237 Identities=27% Similarity=0.445 Sum_probs=205.3
Q ss_pred HHHHHHHHHHHHHhccCCcc------cc----cccccCCCCCCcchHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHhhH
Q 021668 66 YMTLKAKKINKALFEGAAVP------LI----LQYPTLPNHEGERVHGTLCIASCELVGGNESSVMPLACAAEMLVTLAL 135 (309)
Q Consensus 66 ~l~~~~~~i~~~l~~~~~~~------~~----~~y~l~~~~gGKrlRP~L~ll~~~~~g~~~~~~~~~AaaiEliH~aSL 135 (309)
.+++....||+.|.+ .++ .. ++|.+.. ||||+||.|++++++++|++.+.++++|++|||||+|||
T Consensus 36 ~l~~~~~~ve~~l~~--~l~~~~~~~~~l~~~~~y~~~~--gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSL 111 (324)
T 3uca_A 36 NINSLKEEVDQSLKA--YFNKDREYNKVLYDSMAYSINV--GGKRIRPILMLLSYYIYKSDYKKILTPAMAIEMIHTYSL 111 (324)
T ss_dssp CHHHHHHHHHHHHHH--HHCCCCSSCHHHHHHHHHHHHH--CCCCHHHHHHHHHHHTTCSCGGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHhhccCCcHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666 332 11 8999988 999999999999999999999999999999999999999
Q ss_pred --------------------------------HHHHHHHHHHHHHhccCCCChHHH-HHHHHHHHHHhccccchhhhHHH
Q 021668 136 --------------------------------NRALLCYAVEHMATKTKNVSPDRL-VRAIGEISSAVGTRGVLAGRIME 182 (309)
Q Consensus 136 --------------------------------GD~Ll~~Af~~l~~~~~~~~~~~~-~~~~~~la~~~G~~~~~~GQ~~D 182 (309)
||+|++.||+++++.. .+++.. ++++..+++++|..+||.||.+|
T Consensus 112 IHDDIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~--~~~~~~~~~~i~~la~a~g~~~m~~GQ~lD 189 (324)
T 3uca_A 112 IHDDLPCMDNDDLRRGKPTNHKVFGEAIAVLAGDALLNEAMKILVDYS--LEEGKSALKATKIIADAAGSDGMIGGQIVD 189 (324)
T ss_dssp HHHTSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHSTTTHHHHHHHH
T ss_pred HHCCchhccCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHHHHhHhHHHHhHHHH
Confidence 9999999999999852 223344 78888999998888999999999
Q ss_pred hhhCCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcC-----
Q 021668 183 INSKGK-DVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG----- 256 (309)
Q Consensus 183 l~~~~~-~~s~~~~~~i~~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G----- 256 (309)
+.+.++ ++++++|.+|+++|||+||++||++|++++|++++.++.+++||+++|+||||+||++|++++++.+|
T Consensus 190 l~~~~~~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~ 269 (324)
T 3uca_A 190 IINEDKEEISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHK 269 (324)
T ss_dssp HHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------
T ss_pred HHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcch
Confidence 999877 78999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred ---CCCchhhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhccC
Q 021668 257 ---DDEATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHLADFLVSRHK 309 (309)
Q Consensus 257 ---~gK~T~p~l~gle~A~~~a~~~~~~A~~~L~~l~~~~~~~L~~l~~~l~~R~~ 309 (309)
+||.|||+++|+++|++.+++|.++|++.|+.||. .++.|.+|++|+++|++
T Consensus 270 Dl~egK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~~-~~~~L~~la~~i~~R~~ 324 (324)
T 3uca_A 270 DQESNKNNYITIFGLEECKKKCVNITEECIEILSSIKG-NTEPLKVLTMKLLERKF 324 (324)
T ss_dssp -------CHHHHHCHHHHHHHHHHHHHHHHHHHHTSSS-CCHHHHHHHHHHHHCCC
T ss_pred HhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccC
Confidence 79999999999999999999999999999999975 45899999999999975
No 12
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=100.00 E-value=6.1e-50 Score=376.34 Aligned_cols=245 Identities=30% Similarity=0.479 Sum_probs=222.2
Q ss_pred hhHHHHHHHHHHHHHHHHhccCCcc------cc----cccccCCCCCCcchHHHHHHHHHHHhCCCchhhhhHHHHHHHH
Q 021668 61 IQIDEYMTLKAKKINKALFEGAAVP------LI----LQYPTLPNHEGERVHGTLCIASCELVGGNESSVMPLACAAEML 130 (309)
Q Consensus 61 ~~~~~~l~~~~~~i~~~l~~~~~~~------~~----~~y~l~~~~gGKrlRP~L~ll~~~~~g~~~~~~~~~AaaiEli 130 (309)
|+|..++++....|++.|.+ .++ .. ++|.+.. ||||+||.|++++++++|++.+.++++|++||||
T Consensus 1 m~~~~~l~~~~~~v~~~l~~--~l~~~~~~~~~l~~~~~y~~~~--gGKrlRp~l~l~~~~~~g~~~~~~~~~A~avEli 76 (299)
T 1rqj_A 1 MDFPQQLEACVKQANQALSR--FIAPLPFQNTPVVETMQYGALL--GGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECI 76 (299)
T ss_dssp CCHHHHHHHHHHHHHHHHHH--HHTTSSSTTSHHHHHHHHHHHS--SCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHH--HhhhccCCcHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 35777888888888888887 331 11 8999888 9999999999999999999988899999999999
Q ss_pred HHhhH--------------------------------HHHHHHHHHHHHHhcc-CCCChHHHHHHHHHHHHHhccccchh
Q 021668 131 VTLAL--------------------------------NRALLCYAVEHMATKT-KNVSPDRLVRAIGEISSAVGTRGVLA 177 (309)
Q Consensus 131 H~aSL--------------------------------GD~Ll~~Af~~l~~~~-~~~~~~~~~~~~~~la~~~G~~~~~~ 177 (309)
|+||| ||+|++.||+++++.. .+++++...+++..+++++|..+|+.
T Consensus 77 H~asLiHDDiP~~D~s~~RRG~pt~h~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~ 156 (299)
T 1rqj_A 77 HAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCG 156 (299)
T ss_dssp HHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHSTTTHHH
T ss_pred HHhHHHhCCChhhcCCCCCCCCCChhhhcChHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHhhhhHHHH
Confidence 99999 9999999999999841 24566778889999999998889999
Q ss_pred hhHHHhhhCCCCCCHHHHHHHHHhchHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcC
Q 021668 178 GRIMEINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVLI-GGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG 256 (309)
Q Consensus 178 GQ~~Dl~~~~~~~s~~~~~~i~~~KTg~Lf~~a~~~Gail-ag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G 256 (309)
||.+|+.+.++++++++|.+|+++|||+||++||++|+++ +|++++.++.+++||.++|+||||+||++|++++++.+|
T Consensus 157 GQ~~dl~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~~~~~~G 236 (299)
T 1rqj_A 157 GQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLG 236 (299)
T ss_dssp HHHHHHHTTTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHS
T ss_pred hHHHHHhccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhC
Confidence 9999999887678999999999999999999999999999 999889999999999999999999999999999998877
Q ss_pred --------CCCchhhhhhhHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHHHHhccC
Q 021668 257 --------DDEATYPKLMGVAGAKRYAKELVAEANQELAYFDP--TRAAPLYHLADFLVSRHK 309 (309)
Q Consensus 257 --------~gK~T~p~l~gle~A~~~a~~~~~~A~~~L~~l~~--~~~~~L~~l~~~l~~R~~ 309 (309)
+||.|||++++++++++.+++|.++|++.|+.++. +.++.|.+|++|+++|.+
T Consensus 237 K~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~l~~~~~~~~~L~~l~~~~~~R~~ 299 (299)
T 1rqj_A 237 KRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYIIQRNK 299 (299)
T ss_dssp SCTTHHHHHTCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHCCC
T ss_pred CChhhHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhccC
Confidence 79999999999999999999999999999999943 368899999999999974
No 13
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=100.00 E-value=1.3e-50 Score=381.87 Aligned_cols=241 Identities=22% Similarity=0.397 Sum_probs=215.6
Q ss_pred hHHHHHHHHHHHHHHHHhccCCccc-----c----cccccCCCCCCcchHHHHHHHHHHHhCCCchhh--hhHHHHHHHH
Q 021668 62 QIDEYMTLKAKKINKALFEGAAVPL-----I----LQYPTLPNHEGERVHGTLCIASCELVGGNESSV--MPLACAAEML 130 (309)
Q Consensus 62 ~~~~~l~~~~~~i~~~l~~~~~~~~-----~----~~y~l~~~~gGKrlRP~L~ll~~~~~g~~~~~~--~~~AaaiEli 130 (309)
+|.++++++...||+.|.+ .++. . ++|.+.. ||||+||.|++++++++|++.+.+ +++|++||||
T Consensus 7 ~~~~~~~~~~~~ve~~l~~--~l~~~~~~~~l~~~~~y~~~~--gGKrlRp~L~l~~~~~~g~~~~~~~~~~~A~aiEli 82 (309)
T 3pde_A 7 RLIAFEDQWVPALNAPLKQ--AILADSQDAQLAAAMTYSVLA--GGKRLRPLLTVATMQSLGVTFVPERHWRPVMALELL 82 (309)
T ss_dssp HHHHHHHHHHHHHHTTHHH--HHHHTCSCHHHHHHHHHHHHT--CCCCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--HhcccCCcHHHHHHHHHHHhC--CCCchHHHHHHHHHHHhCCCHHHHhHhHHHHHHHHH
Confidence 6888999999999999988 4421 1 8999988 999999999999999999998888 9999999999
Q ss_pred HHhhH--------------------------------HHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHhccccchhh
Q 021668 131 VTLAL--------------------------------NRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAG 178 (309)
Q Consensus 131 H~aSL--------------------------------GD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~la~~~G~~~~~~G 178 (309)
|+||| ||+|++.||+++++. +.+++..++++..+++++|..+||.|
T Consensus 83 H~aSLIHDDiP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~--~~~~~~~~~~~~~l~~a~g~~~m~~G 160 (309)
T 3pde_A 83 HTYSLIHDDLPAMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTAT--DLPATMQAALVQALATAAGPSGMVAG 160 (309)
T ss_dssp HHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHTSS--SCCHHHHHHHHHHHHHHHSTTTHHHH
T ss_pred HHHHHHHCCchhccCCCCCCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHhhHhHHHHh
Confidence 99999 999999999999985 34566778899999999988899999
Q ss_pred hHHHhhhCCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcC--
Q 021668 179 RIMEINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG-- 256 (309)
Q Consensus 179 Q~~Dl~~~~~~~s~~~~~~i~~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G-- 256 (309)
|.+|+.+.+.++++++|.+|+++|||+||++||++|++++|++++.++.+++||.++|+||||+||++|++++++.+|
T Consensus 161 Q~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~ 240 (309)
T 3pde_A 161 QAKDIQSEHVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEMGKA 240 (309)
T ss_dssp HHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCC
Confidence 999999987788999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred ------CCCchhhhhhhHHHHHHHHHHHHHHHHHHhccCCCC--CHHHHHHHHHHHHhccC
Q 021668 257 ------DDEATYPKLMGVAGAKRYAKELVAEANQELAYFDPT--RAAPLYHLADFLVSRHK 309 (309)
Q Consensus 257 ------~gK~T~p~l~gle~A~~~a~~~~~~A~~~L~~l~~~--~~~~L~~l~~~l~~R~~ 309 (309)
+||.|||+++|++.|++.+++++++|.+.|+.++.. ... |.+|++|+++|++
T Consensus 241 ~g~Dl~egK~T~p~l~al~~a~~~~~~~~~~a~~~l~~~~~~~~~~~-L~~l~~~~~~r~~ 300 (309)
T 3pde_A 241 TQKDADEAKNTYPGKLGLIGANQALIDTIHSGQAALQGLPTSTQRDD-LAAFFSYFDTERV 300 (309)
T ss_dssp ----CTTTSSSHHHHHCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH-HHGGGGGSCTTTT
T ss_pred ccchhhcCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccCHHH-HHHHHHHHHHhhc
Confidence 899999999999999999999999999999995321 123 9999999999974
No 14
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=100.00 E-value=5.7e-49 Score=368.80 Aligned_cols=240 Identities=48% Similarity=0.821 Sum_probs=211.8
Q ss_pred hHHHHHHHHHHHHHHHHhccCC--cccc----cccccCCCCCCcchHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHhhH
Q 021668 62 QIDEYMTLKAKKINKALFEGAA--VPLI----LQYPTLPNHEGERVHGTLCIASCELVGGNESSVMPLACAAEMLVTLAL 135 (309)
Q Consensus 62 ~~~~~l~~~~~~i~~~l~~~~~--~~~~----~~y~l~~~~gGKrlRP~L~ll~~~~~g~~~~~~~~~AaaiEliH~aSL 135 (309)
+|+.++.+....|++.|.+.+. .|.. ++|.+.. ||||+||.||+++++++|++.+.++++|++|||||+|||
T Consensus 12 ~~~~~~~~~~~~v~~~l~~~l~~~~~~~l~~~~~y~~~~--gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asL 89 (293)
T 2j1p_A 12 DPISYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLA--GGKRVRPVLCIAACELVGGEESLAMPAACAVEMIHTMSL 89 (293)
T ss_dssp -CHHHHHHHHHHHHHHHHHHSCSCSSHHHHHHHHHHHTS--CCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 6778888888899999988321 1221 8999988 999999999999999999988889999999999999999
Q ss_pred --------------------------------HHHHHHHHHHHHHhccCC-CChHHHHHHHHHHHHHhccccchhhhHHH
Q 021668 136 --------------------------------NRALLCYAVEHMATKTKN-VSPDRLVRAIGEISSAVGTRGVLAGRIME 182 (309)
Q Consensus 136 --------------------------------GD~Ll~~Af~~l~~~~~~-~~~~~~~~~~~~la~~~G~~~~~~GQ~~D 182 (309)
||+|++.||+++++.... .++..+++++.++++++|..+||.||.+|
T Consensus 90 iHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~D 169 (293)
T 2j1p_A 90 IHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVD 169 (293)
T ss_dssp HHHTSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHT
T ss_pred HHCCchhccCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 999999999999986322 45677889999999998888999999999
Q ss_pred hhhCCC---CCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcCCCC
Q 021668 183 INSKGK---DVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGDDE 259 (309)
Q Consensus 183 l~~~~~---~~s~~~~~~i~~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G~gK 259 (309)
+.+.+. ++++++|.+|+++|||+||++||++|++++|++++.++.+++||.++|+||||+||++|+++++ |
T Consensus 170 l~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~~~------K 243 (293)
T 2j1p_A 170 ISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSS------K 243 (293)
T ss_dssp TC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------C
T ss_pred HHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc------c
Confidence 988763 4678899999999999999999999999999999999999999999999999999999999875 8
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhccC
Q 021668 260 ATYPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHLADFLVSRHK 309 (309)
Q Consensus 260 ~T~p~l~gle~A~~~a~~~~~~A~~~L~~l~~~~~~~L~~l~~~l~~R~~ 309 (309)
.|+|+++|+++|++.+++|.++|++.|+.++++.++.|.+|++|+++|.+
T Consensus 244 ~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R~~ 293 (293)
T 2j1p_A 244 LTYPKLMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYIANRQN 293 (293)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTTTSCTTTTHHHHHHHHHHHHCCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999976578899999999999974
No 15
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=100.00 E-value=1.4e-47 Score=358.75 Aligned_cols=230 Identities=21% Similarity=0.313 Sum_probs=197.8
Q ss_pred HHHHHHHHhccCCcc------cc----cccccCCCCCCcchHHHHHHHHHHHhCCC-chhhhhHHHHHHHHHHhhH----
Q 021668 71 AKKINKALFEGAAVP------LI----LQYPTLPNHEGERVHGTLCIASCELVGGN-ESSVMPLACAAEMLVTLAL---- 135 (309)
Q Consensus 71 ~~~i~~~l~~~~~~~------~~----~~y~l~~~~gGKrlRP~L~ll~~~~~g~~-~~~~~~~AaaiEliH~aSL---- 135 (309)
...||+.|++ .++ .. ++|.+.. ||||+||.|++++++++|++ .+.++++|++|||||+|||
T Consensus 6 ~~~i~~~l~~--~~~~~~~~~~~l~~~~~y~~~~--gGKrlRp~L~l~~~~~~~~~~~~~~~~~A~aiEliH~aSLIHDD 81 (291)
T 3npk_A 6 KELFIHHLEK--NLPKVESFHPFFNEALALMLKA--GGKHFRAQLLLSVVQSNKPELLNQALDVALALEFIHTYSLIHDD 81 (291)
T ss_dssp HHHHHHHHHT--CCCCCCSSCSSHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH--HhhhccCCcHHHHHHHHHHHhC--CCcchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHCC
Confidence 3456677766 332 11 8999988 99999999999999999987 5789999999999999999
Q ss_pred ----------------------------HHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHhccccchhhhHHHhhhCC
Q 021668 136 ----------------------------NRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKG 187 (309)
Q Consensus 136 ----------------------------GD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~la~~~G~~~~~~GQ~~Dl~~~~ 187 (309)
||+|++.||+++++. ++++...++++..++++.|..+||.||.+|+.+.+
T Consensus 82 Ip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~--~~~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~~~~ 159 (291)
T 3npk_A 82 LPAMDNADFRRGIPTLHKSYDETTAILVGDALNTEAFLVLSHA--HLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFED 159 (291)
T ss_dssp STTTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHTS--SSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTT
T ss_pred cccccCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHhHHHHHHHHHHHHhccC
Confidence 999999999999874 34566778889999999777999999999999987
Q ss_pred CCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcC------CCCch
Q 021668 188 KDVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG------DDEAT 261 (309)
Q Consensus 188 ~~~s~~~~~~i~~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G------~gK~T 261 (309)
..++.++|.+|+++|||+||++||++||+++|++++.++.+++||+++|+||||+||++|++++++.+| +||.|
T Consensus 160 ~~~~~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~~~d~gK~T 239 (291)
T 3npk_A 160 KRLSLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNNDIHKNS 239 (291)
T ss_dssp SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------CC
T ss_pred CCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCCccchhcCcch
Confidence 678999999999999999999999999999999999999999999999999999999999999998888 79999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHh
Q 021668 262 YPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHLADFLVS 306 (309)
Q Consensus 262 ~p~l~gle~A~~~a~~~~~~A~~~L~~l~~~~~~~L~~l~~~l~~ 306 (309)
||+++|++.|++.+++++++|.+.|+.|+....+.|.+|++|..+
T Consensus 240 ~p~l~~l~~a~~~~~~~~~~a~~~l~~~~~~~~~~l~~la~~~~~ 284 (291)
T 3npk_A 240 FVNLLGLEQAIKTKENLLNECEQDLEKLNEKLAQMIQNLIIQYLE 284 (291)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999975337799999999765
No 16
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=100.00 E-value=1.7e-47 Score=365.95 Aligned_cols=236 Identities=25% Similarity=0.355 Sum_probs=202.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhccCCcc----cc---cccccCCCCCCcchHHHHHHHHHHHhCCCchhhhhHHHHHHHHHH
Q 021668 60 EIQIDEYMTLKAKKINKALFEGAAVP----LI---LQYPTLPNHEGERVHGTLCIASCELVGGNESSVMPLACAAEMLVT 132 (309)
Q Consensus 60 ~~~~~~~l~~~~~~i~~~l~~~~~~~----~~---~~y~l~~~~gGKrlRP~L~ll~~~~~g~~~~~~~~~AaaiEliH~ 132 (309)
-.++..+++.....|++.|.+ .++ .. ++|.+.. ||||+||.||+++++++|++.+.++++|+++||||+
T Consensus 24 ~~~l~~~l~~~l~~v~~~l~~--~l~~~~~~l~~~~~y~~~~--gGKrlRp~l~ll~~~~~g~~~~~~~~~A~aiEliH~ 99 (345)
T 3oyr_A 24 VDRLVRLAEADMAGVNRLITD--RMQSDVAIIPALAEHLIAA--GGKRLRPLMTVAAARLAGADNDHFQKLAAAVEFIHT 99 (345)
T ss_dssp SHHHHHHTHHHHHHHHHHHHH--HTCCSSTHHHHHHHHHHTT--TCCCHHHHHHHHHHHHTTCCSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HhccCChhHHHHHHHHHhC--CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 347788899999999999988 442 11 7999988 999999999999999999999999999999999999
Q ss_pred hhH------------------------------HHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHhccccchhhhHHH
Q 021668 133 LAL------------------------------NRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIME 182 (309)
Q Consensus 133 aSL------------------------------GD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~la~~~G~~~~~~GQ~~D 182 (309)
+|| ||+|++.||+++++.. . .+++..+++++ .+||+||++|
T Consensus 100 asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~----~---~~~~~~~~~~~--~~~~~GQ~~d 170 (345)
T 3oyr_A 100 ATLLHDDVVDGSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFELMVETN----S---MKALEILARAS--RVIAEGEVLQ 170 (345)
T ss_dssp HHHHTTTTC---------CCCSCCTTHHHHHHHHHHHHHHHHHHHHTTT----C---HHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHCcccCCCCCCCCCccHHHhhCHHHHHHHHHHHHHHHHHHHHhCC----c---HHHHHHHHHHH--HHHHHHHHHH
Confidence 999 9999999999999852 1 34555667777 6899999999
Q ss_pred hhhCCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcC-----
Q 021668 183 INSKGK-DVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG----- 256 (309)
Q Consensus 183 l~~~~~-~~s~~~~~~i~~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G----- 256 (309)
+.+.++ ++++++|..|+.+|||+||++||++|++++|++++.++.+++||+++|+||||+||++|++++++.+|
T Consensus 171 l~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~~g~ 250 (345)
T 3oyr_A 171 LMRSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETLGKNAGD 250 (345)
T ss_dssp HHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-------------
T ss_pred HHcCCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCccc
Confidence 999866 68999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred ---CCCchhhhhhh--------------------------------------HHHHHHHHHHHHHHHHHHhccCCC-CCH
Q 021668 257 ---DDEATYPKLMG--------------------------------------VAGAKRYAKELVAEANQELAYFDP-TRA 294 (309)
Q Consensus 257 ---~gK~T~p~l~g--------------------------------------le~A~~~a~~~~~~A~~~L~~l~~-~~~ 294 (309)
+||.|||++++ ++++++.+++|.++|++.|+.||. +.+
T Consensus 251 Dl~egK~TlP~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~v~~~i~~~gale~a~~~a~~~~~~A~~~L~~lp~~~~~ 330 (345)
T 3oyr_A 251 DFREGKATLPLLLAIARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATLDLAADYADKAKAALAMFPANDWR 330 (345)
T ss_dssp ------CCHHHHHHHHHSCSHHHHHHHHHCC----CCSSHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTSCSSHHH
T ss_pred hhhcCchHHHHHHHHHhCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCcHHH
Confidence 79999999874 478999999999999999999964 567
Q ss_pred HHHHHHHHHHHhcc
Q 021668 295 APLYHLADFLVSRH 308 (309)
Q Consensus 295 ~~L~~l~~~l~~R~ 308 (309)
+.|.+|++|+++|+
T Consensus 331 ~~L~~la~~~~~R~ 344 (345)
T 3oyr_A 331 EALEELADFAVSRR 344 (345)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcc
Confidence 89999999999996
No 17
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=100.00 E-value=1.3e-47 Score=359.62 Aligned_cols=209 Identities=20% Similarity=0.329 Sum_probs=181.8
Q ss_pred cccccCCCCCCcchHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHhhH------------------------------HH
Q 021668 88 LQYPTLPNHEGERVHGTLCIASCELVGGNESSVMPLACAAEMLVTLAL------------------------------NR 137 (309)
Q Consensus 88 ~~y~l~~~~gGKrlRP~L~ll~~~~~g~~~~~~~~~AaaiEliH~aSL------------------------------GD 137 (309)
++|.+.. ||||+||.|++++++++|++++.++++|+++||||+||| ||
T Consensus 34 ~~y~~~~--gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLIHDDi~D~s~~RRG~pt~h~~~G~~~AIlaGD 111 (295)
T 3ipi_A 34 VEHVCHS--GGKRIRPIILLLVSEICSGSYSRSLNAALAVEMMHSASLIHDDLLDQGLVRRNLPSAPEKFGPSGALLCGD 111 (295)
T ss_dssp HHHHHTT--CCCCHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHTSCTTSCCCCCSSCHHHHHHHHH
T ss_pred HHHHHhC--CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCcCcCCCCCCCCCccHHHhcCccHHHHHHH
Confidence 8999988 999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHhccccchhhhHHHhhhCCCCCCHHHHHHHHHhchHHHHHHHHHHHHHh
Q 021668 138 ALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVLI 217 (309)
Q Consensus 138 ~Ll~~Af~~l~~~~~~~~~~~~~~~~~~la~~~G~~~~~~GQ~~Dl~~~~~~~s~~~~~~i~~~KTg~Lf~~a~~~Gail 217 (309)
+|++.||+++++.. . +++..+++++ .+||.||.+|+.+.++.+++++|..|+++|||+||++||++|+++
T Consensus 112 ~Ll~~a~~ll~~~~-----~---~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~t~~~y~~~i~~KTg~L~~~a~~~ga~l 181 (295)
T 3ipi_A 112 YLIAKSIAFISPYG-----E---KVIQDFGKAG--MDMAEGEVLDLKLEDESFGENDYFKCIYKKTASLFAISASIGAYT 181 (295)
T ss_dssp HHHHHHHHHHGGGC-----H---HHHHHHHHHH--HHHHHHHHHHHC-------CHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHch-----H---HHHHHHHHHH--HHHHccchHHHHccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 99999999998752 2 3455567777 689999999999886678889999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccch--hcCCCCchhhhhhh--------HHHHHHHHHHHHHHHHHHhc
Q 021668 218 GGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKK--EAGDDEATYPKLMG--------VAGAKRYAKELVAEANQELA 287 (309)
Q Consensus 218 ag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~--~~G~gK~T~p~l~g--------le~A~~~a~~~~~~A~~~L~ 287 (309)
+|++++.++.+++||+++|+||||+||++|++++++ ...+||.|||++++ +++|++.+++|.++|++.|+
T Consensus 182 ag~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~gkd~~~gk~Tlp~l~al~~~~~~~le~a~~~a~~~~~~A~~~L~ 261 (295)
T 3ipi_A 182 GGAEEELAERFSHFGNALGTAYQIVDDILEFLEVVEGKESKFTSETLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETLE 261 (295)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCcccCcccHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999764 12289999999998 99999999999999999999
Q ss_pred cCCC-CCHHHHHHHHHHHHhcc
Q 021668 288 YFDP-TRAAPLYHLADFLVSRH 308 (309)
Q Consensus 288 ~l~~-~~~~~L~~l~~~l~~R~ 308 (309)
.||. +.++.|.+|++|++.|.
T Consensus 262 ~lp~~~~~~~L~~l~~~~~~~~ 283 (295)
T 3ipi_A 262 TFRECPARDKLFQITDYITVDM 283 (295)
T ss_dssp TSCCSHHHHHHHHHHHHTTGGG
T ss_pred hCCCchHHHHHHHHHHHHHHhC
Confidence 9964 46789999999999885
No 18
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=100.00 E-value=1.5e-46 Score=359.08 Aligned_cols=239 Identities=23% Similarity=0.328 Sum_probs=205.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhccCC---cccc---cccccCCCCCCcchHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHh
Q 021668 60 EIQIDEYMTLKAKKINKALFEGAA---VPLI---LQYPTLPNHEGERVHGTLCIASCELVGGNESSVMPLACAAEMLVTL 133 (309)
Q Consensus 60 ~~~~~~~l~~~~~~i~~~l~~~~~---~~~~---~~y~l~~~~gGKrlRP~L~ll~~~~~g~~~~~~~~~AaaiEliH~a 133 (309)
-.++..+++.....|++.|.+.+. .+.. ++|.+.. ||||+||.|++++++++|++.+.++++|++|||||++
T Consensus 11 ~~~l~~~l~~~l~~v~~~l~~~~~~~~~~~l~~~~~y~~~~--gGKrlRp~l~l~~~~~~g~~~~~~~~~A~aiEliH~a 88 (341)
T 3mzv_A 11 HDRLAQALAEDMAAVNALIRERMSSEHAPRIPEVTAHLIEA--GGKRLRPMLTLAAARLVGYGGPFHVHLAATVEFIHTA 88 (341)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHSCCSSCTHHHHHHHHHHHS--CCCCHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHhC--CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 346778888899999999988331 1111 8899988 9999999999999999999999999999999999999
Q ss_pred hH------------------------------HHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHhccccchhhhHHHh
Q 021668 134 AL------------------------------NRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEI 183 (309)
Q Consensus 134 SL------------------------------GD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~la~~~G~~~~~~GQ~~Dl 183 (309)
|| ||+|++.||+++++.. . .+++..+++++ .+||.||.+|+
T Consensus 89 sLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~----~---~~~~~~~~~~~--~~~~~GQ~~dl 159 (341)
T 3mzv_A 89 TLLHDDVVDESRQRRGRPTANLLWDNKSSVLVGDYLFARSFQLMTDTG----N---MRVMEILANAS--AVIAEGEVLQL 159 (341)
T ss_dssp HHHHHHC------CTTSCCHHHHSCHHHHHHHHHHHHHHHHHHHGGGC----C---HHHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHcCccCCCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCC----c---HHHHHHHHHHH--HHHHHHHHHHH
Confidence 99 9999999999999852 1 34455567777 78999999999
Q ss_pred hhCCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcC------
Q 021668 184 NSKGK-DVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG------ 256 (309)
Q Consensus 184 ~~~~~-~~s~~~~~~i~~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G------ 256 (309)
.+..+ ++++++|..|+.+|||+||++||++|++++|++++.++.+++||+++|+||||+||++|++++++.+|
T Consensus 160 ~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~D 239 (341)
T 3mzv_A 160 TAAQNLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAEIGKNTGDD 239 (341)
T ss_dssp HHTTCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCHH
T ss_pred HhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCcc
Confidence 99866 68999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred --CCCchhhhhh--------------------------------------hHHHHHHHHHHHHHHHHHHhccCCC-CCHH
Q 021668 257 --DDEATYPKLM--------------------------------------GVAGAKRYAKELVAEANQELAYFDP-TRAA 295 (309)
Q Consensus 257 --~gK~T~p~l~--------------------------------------gle~A~~~a~~~~~~A~~~L~~l~~-~~~~ 295 (309)
+||.|||+++ +++++++.+++|.++|++.|+.||. +.++
T Consensus 240 l~egK~Tlp~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~l~~~ga~~~a~~~a~~~~~~A~~~L~~lp~~~~~~ 319 (341)
T 3mzv_A 240 FRERKLTMPVIKAVALADEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEATRLAAIGWTDTARKALAKLPDHPLRQ 319 (341)
T ss_dssp HHTTCCCHHHHHHHHTCCHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred cccCchhHHHHHHHHhCCHhHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 8999999976 3688999999999999999999964 5678
Q ss_pred HHHHHHHHHHhccC
Q 021668 296 PLYHLADFLVSRHK 309 (309)
Q Consensus 296 ~L~~l~~~l~~R~~ 309 (309)
.|.+|++|+++|.+
T Consensus 320 ~L~~la~~~~~r~~ 333 (341)
T 3mzv_A 320 MLDDLADYVVERVR 333 (341)
T ss_dssp HHHHHHHHHTGGGC
T ss_pred HHHHHHHHHHhccc
Confidence 99999999999974
No 19
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.6e-46 Score=358.95 Aligned_cols=241 Identities=29% Similarity=0.408 Sum_probs=213.2
Q ss_pred HHHHHHHHHHHHHHHHhccCCc--ccc----cccccCCCCCCcchHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHhhH-
Q 021668 63 IDEYMTLKAKKINKALFEGAAV--PLI----LQYPTLPNHEGERVHGTLCIASCELVGGNESSVMPLACAAEMLVTLAL- 135 (309)
Q Consensus 63 ~~~~l~~~~~~i~~~l~~~~~~--~~~----~~y~l~~~~gGKrlRP~L~ll~~~~~g~~~~~~~~~AaaiEliH~aSL- 135 (309)
+...+++....|++.|.+.+.. +.. ++|.+.. ||||+||.|++++++++|++.+.++++|+++||||+|||
T Consensus 7 ~~~~~~~~~~~v~~~l~~~~~~~~~~~l~~~~~~~~~~--gGKrlRp~l~l~~~~~~g~~~~~~~~~A~avEliH~asLi 84 (342)
T 1wy0_A 7 LFARIKEKAKLIDEKIFELIPEKDPRVLYEAARHYPLA--GGKRVRPFVVLTSTEAVGGDPLRAIYPAVAIELIHNYSLV 84 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSCSSHHHHHHHHHTGGG--TCCCHHHHHHHHHTTTTTSCGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhC--CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777888888873211 111 8899888 999999999999999999988889999999999999999
Q ss_pred -----------------------------HHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHhccccchhhhHHHhhhC
Q 021668 136 -----------------------------NRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINSK 186 (309)
Q Consensus 136 -----------------------------GD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~la~~~G~~~~~~GQ~~Dl~~~ 186 (309)
||+|++.||+++++. ..+++...+++..+++++ .+||.||.+|+.+.
T Consensus 85 HDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~--~~~~~~~~~~~~~~~~~~--~~~~~GQ~~dl~~~ 160 (342)
T 1wy0_A 85 HDDIMDMDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVARA--EIPPEKKARVLEVIVKAS--NELCEGQARDLEFE 160 (342)
T ss_dssp HHHHHHTCCCSTTSCCHHHHHCHHHHHHHHHHHHHHHHHHHHTC--CSCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHT
T ss_pred HCCcccCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHHc--ccCcccHHHHHHHHHHHH--HHHHHHHHHHHHcc
Confidence 999999999999986 245556677888889988 89999999999998
Q ss_pred CC-CCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcC--------C
Q 021668 187 GK-DVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG--------D 257 (309)
Q Consensus 187 ~~-~~s~~~~~~i~~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G--------~ 257 (309)
.+ ++++++|..|+.+|||+||++||++|++++|++++.++.+++||.++|+||||+||++|++++++.+| +
T Consensus 161 ~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~e 240 (342)
T 1wy0_A 161 KKSTVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKLGKPVGSDIRK 240 (342)
T ss_dssp TCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTSCSCHHHHH
T ss_pred cCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhHHhC
Confidence 76 68999999999999999999999999999999999999999999999999999999999999998877 7
Q ss_pred CCchhhhhhhHH-------------------------------------------------HHHHHHHHHHHHHHHHhcc
Q 021668 258 DEATYPKLMGVA-------------------------------------------------GAKRYAKELVAEANQELAY 288 (309)
Q Consensus 258 gK~T~p~l~gle-------------------------------------------------~A~~~a~~~~~~A~~~L~~ 288 (309)
||.|||++++++ ++++.+++|.++|++.|+.
T Consensus 241 gK~Tlp~i~al~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~ 320 (342)
T 1wy0_A 241 GKKTLIVAHFFENADEKDKQRFLKIFGKYAGDVKGRGIIEEDIKSDVMEAIDLLKKYGSIDYAAEIAKDMIKKANEALRI 320 (342)
T ss_dssp TCCCHHHHHHHHHCCHHHHHHHHHTSCC-------------CHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTGGG
T ss_pred CCCcHHHHHHHHhCCHhHHHHHHHHHcccccccccccccccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 999999988764 6789999999999999999
Q ss_pred CCC-CCHHHHHHHHHHHHhccC
Q 021668 289 FDP-TRAAPLYHLADFLVSRHK 309 (309)
Q Consensus 289 l~~-~~~~~L~~l~~~l~~R~~ 309 (309)
++. +.++.|.++++|+.+|.+
T Consensus 321 l~~~~~~~~L~~l~~~~~~R~~ 342 (342)
T 1wy0_A 321 LPKSKARMDLELLAKFIVEREY 342 (342)
T ss_dssp SCCCHHHHHHHHHHHHTTTCC-
T ss_pred CCCcHHHHHHHHHHHHHHhccC
Confidence 964 367899999999999974
No 20
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=100.00 E-value=1.8e-46 Score=360.52 Aligned_cols=239 Identities=22% Similarity=0.306 Sum_probs=209.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhccCCccc-------ccccccCCCCCCcchHHHHHHHHHHHhC-CCchhhhhHHHHHH
Q 021668 57 PFPEIQIDEYMTLKAKKINKALFEGAAVPL-------ILQYPTLPNHEGERVHGTLCIASCELVG-GNESSVMPLACAAE 128 (309)
Q Consensus 57 ~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~-------~~~y~l~~~~gGKrlRP~L~ll~~~~~g-~~~~~~~~~AaaiE 128 (309)
.....++..+++.....|++.|.+ .++. .++|.+.. ||||+||.|++++++++| .+.+.++++|++||
T Consensus 30 ~~~~~~~~~~l~~~l~~ve~~l~~--~~~~~~~~l~~~~~y~~~~--gGKrlRp~L~ll~~~~~~~~~~~~~~~~A~avE 105 (360)
T 3lmd_A 30 EFGDPELTARINDAMVQVEELLHT--ELSSGEDFLVDIVMHLTRA--GGKRFRPMFALLASEFGEKPLSENVIKAAVVVE 105 (360)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHH--HHTCSCHHHHHHHHHHCCC--CSCCHHHHHHHHHHTTSSSTTCHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHH--HhccCcHHHHHHHHHHHHC--CCCcHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 345568889999999999999988 4431 18999988 999999999999999998 78889999999999
Q ss_pred HHHHhhH------------------------------HHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHhccccchhh
Q 021668 129 MLVTLAL------------------------------NRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAG 178 (309)
Q Consensus 129 liH~aSL------------------------------GD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~la~~~G~~~~~~G 178 (309)
|||+||| ||+|++.||+++++.. + +++..+++++ .+||.|
T Consensus 106 liH~asLIHDDImD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~----~----~~~~~~~~~~--~~~~~G 175 (360)
T 3lmd_A 106 ITHLATLYHDDVMDEASMRRGVPSANARWDNSVAILAGDILLAHASGLMSQLG----T----DTVAHFAETF--GELVTG 175 (360)
T ss_dssp HHHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHC----H----HHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHhCCCcCCCCCCCCCCcHHhhcChHHHHHHHHHHHHHHHHHHHHCC----H----HHHHHHHHHH--HHHHHH
Confidence 9999999 9999999999999862 2 4556667777 789999
Q ss_pred hHHHhhhCCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcC--
Q 021668 179 RIMEINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG-- 256 (309)
Q Consensus 179 Q~~Dl~~~~~~~s~~~~~~i~~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G-- 256 (309)
|++|+.+..+.+++++|..|+++|||+||++||++|++++|++++.++.+++||+++|+||||+||++|++++++.+|
T Consensus 176 Q~ldl~~~~~~~t~~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~ 255 (360)
T 3lmd_A 176 QMRETVGPRDTDPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSETHESGKT 255 (360)
T ss_dssp HHHHHHCCTTSCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHhccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhhCCC
Confidence 999999986667899999999999999999999999999999999999999999999999999999999999998877
Q ss_pred ------CCCchhhhhh-------------------------------------hHHHHHHHHHHHHHHHHHHhccCCC-C
Q 021668 257 ------DDEATYPKLM-------------------------------------GVAGAKRYAKELVAEANQELAYFDP-T 292 (309)
Q Consensus 257 ------~gK~T~p~l~-------------------------------------gle~A~~~a~~~~~~A~~~L~~l~~-~ 292 (309)
+||.|||+++ +++++++.+++|.++|++.|+.||. +
T Consensus 256 ~g~Dl~egK~Tlp~l~al~~~~~~~~~L~~~l~~~~~~~~~~~~~~~ll~~~gal~~a~~~a~~~~~~A~~~L~~lp~~~ 335 (360)
T 3lmd_A 256 PGTDLREGVFTLPVLYALREDTPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALDEVYRYMDIANAELDRLPDST 335 (360)
T ss_dssp CCHHHHHTCCCHHHHHHHHCCSHHHHHHHHHCSSCCCSHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHTTSCCSH
T ss_pred chhHHhcCCchHHHHHHHHcCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhCCCcH
Confidence 7999999986 4788999999999999999999964 4
Q ss_pred CHHHHHHHHHHHHhccC
Q 021668 293 RAAPLYHLADFLVSRHK 309 (309)
Q Consensus 293 ~~~~L~~l~~~l~~R~~ 309 (309)
.++.|.+|++|+++|.+
T Consensus 336 ~~~~L~~La~~~~~R~~ 352 (360)
T 3lmd_A 336 VKEALRNLATFTVKRVG 352 (360)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 67899999999999973
No 21
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=100.00 E-value=5.5e-46 Score=357.22 Aligned_cols=234 Identities=23% Similarity=0.303 Sum_probs=202.3
Q ss_pred hHHHHHHHHHHHHHHHHhccCCcc----cc----cccccCCCCCCcchHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHh
Q 021668 62 QIDEYMTLKAKKINKALFEGAAVP----LI----LQYPTLPNHEGERVHGTLCIASCELVGGNESSVMPLACAAEMLVTL 133 (309)
Q Consensus 62 ~~~~~l~~~~~~i~~~l~~~~~~~----~~----~~y~l~~~~gGKrlRP~L~ll~~~~~g~~~~~~~~~AaaiEliH~a 133 (309)
.++.+++.+...|++.|.+ .++ .. ++|.+.. ||||+||.||+++++++|++.+.++++|++|||||++
T Consensus 5 ~~~~~~~~~~~~v~~~l~~--~~~~~~~~~l~~~~~y~~~~--gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~a 80 (358)
T 4dhd_A 5 VVSRLHQKYGAEVEKALVR--YLSIGLAEDFREAVLYQVKT--GGKRLRPLLTLAAAEAVSGQWRPALPAAAIVELIHNY 80 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHTTCCHHHHHHHHGGGSS--CCCCHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--HhcccCCHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 4678888888899998887 432 11 8999988 9999999999999999999999999999999999999
Q ss_pred hH------------------------------HHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHhccccchhhhHHHh
Q 021668 134 AL------------------------------NRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEI 183 (309)
Q Consensus 134 SL------------------------------GD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~la~~~G~~~~~~GQ~~Dl 183 (309)
|| ||+|++.||+++.... ...+++..+++++ .+||.||.+|+
T Consensus 81 sLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~------~~~~~~~~~~~~~--~~~~~GQ~ldl 152 (358)
T 4dhd_A 81 SLIYDDIIDRGDVRRGLPTVRKAFGDNAAILVGIWYREAIEEAVLDTP------KPTLFAKEVAEVI--KAIDEGERLDI 152 (358)
T ss_dssp HHHHHHHHTTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTSS------SHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHCccccCCCCcCCCccHHHhcCHHHHHHHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 99 9999999999996531 2345666778888 78999999999
Q ss_pred hhC-----------CC--CCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcc
Q 021668 184 NSK-----------GK--DVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMK 250 (309)
Q Consensus 184 ~~~-----------~~--~~s~~~~~~i~~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~ 250 (309)
.+. ++ ++++++|..|+.+|||+||++||++|++++|++++.++.+++||.++|+||||+||++|+++
T Consensus 153 ~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~g 232 (358)
T 4dhd_A 153 LFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVLDIYG 232 (358)
T ss_dssp HTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 987 33 67899999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhcC--------CCCc-hhhhhhhH--------------------------------------HHHHHHHHHHHHHHH
Q 021668 251 KKKEAG--------DDEA-TYPKLMGV--------------------------------------AGAKRYAKELVAEAN 283 (309)
Q Consensus 251 ~~~~~G--------~gK~-T~p~l~gl--------------------------------------e~A~~~a~~~~~~A~ 283 (309)
|++.+| +||. |||+++++ +++++.+++|.++|+
T Consensus 233 d~~~~GK~~g~Dl~egK~~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~i~~li~~~gai~~a~~~a~~~~~~A~ 312 (358)
T 4dhd_A 233 DPKKFGKEIGKDIKEHKRGNAVVAVALSHLGEGERRRLLEILAREVVEEADVREAVALLDSVGAREEALRLAARYREEAE 312 (358)
T ss_dssp -------CTTHHHHTTBSCSHHHHHHHHHSCHHHHHHHHHHHHCSSCCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred ChhhcCCCchhhHhcCChhhHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence 998877 8999 99998754 448899999999999
Q ss_pred HHhccCCCCCHHHHHHHHHHHHhccC
Q 021668 284 QELAYFDPTRAAPLYHLADFLVSRHK 309 (309)
Q Consensus 284 ~~L~~l~~~~~~~L~~l~~~l~~R~~ 309 (309)
+.|+.+|+.. .|.+|++|+++|++
T Consensus 313 ~~L~~lp~~~--~L~~la~~~~~R~~ 336 (358)
T 4dhd_A 313 RHLAKIPNNG--TLKELLDFIVAREY 336 (358)
T ss_dssp HHHTTSSSCH--HHHHHHHHHTTTTT
T ss_pred HHHHcCCCCH--HHHHHHHHHHhccc
Confidence 9999997422 89999999999974
No 22
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=100.00 E-value=6.4e-46 Score=355.98 Aligned_cols=238 Identities=24% Similarity=0.322 Sum_probs=207.7
Q ss_pred hHHHHHHHHHHHHHHHHhccCCccc---c----ccccc-----------CCCCCCcchHHHHHHHHHHHhCCCchhhhhH
Q 021668 62 QIDEYMTLKAKKINKALFEGAAVPL---I----LQYPT-----------LPNHEGERVHGTLCIASCELVGGNESSVMPL 123 (309)
Q Consensus 62 ~~~~~l~~~~~~i~~~l~~~~~~~~---~----~~y~l-----------~~~~gGKrlRP~L~ll~~~~~g~~~~~~~~~ 123 (309)
++.+++++.+..|+..|++ .++. . +.|.+ .. ||||+||+||+++++++|++.+.++++
T Consensus 4 ~~~~~l~~~~~~v~~~l~~--~v~~~~~~l~~~~~y~~~~~~~~~~~~~~~--gGKrlRp~l~ll~~~~~g~~~~~~~~~ 79 (352)
T 3nf2_A 4 DVTALLERGRTLATPVLRA--AVDRLAPPMDTVAAYHFGWIDAQGNPADGD--GGKAVRPALAVLSAEVTGAAPEVGVPG 79 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHH--HHHTSCTTHHHHHHHHTTSBCTTSCBCCCC--CCCCHHHHHHHHHHHTTTCCGGGGHHH
T ss_pred hHHHHHHHHHHHHHHHHHH--HHcccChHHHHHHHHHhcccccccccCcCC--CcccHHHHHHHHHHHHcCCCHHHHHHH
Confidence 4567889999999999988 4421 1 45555 45 999999999999999999999999999
Q ss_pred HHHHHHHHHhhH------------------------------HHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHhccc
Q 021668 124 ACAAEMLVTLAL------------------------------NRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTR 173 (309)
Q Consensus 124 AaaiEliH~aSL------------------------------GD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~la~~~G~~ 173 (309)
|+++||||++|| ||+|++.||+++++.. .....+++..+++++ .
T Consensus 80 A~avEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~----~~~~~~~~~~~~~~~--~ 153 (352)
T 3nf2_A 80 AVAVELVHNFSLLHDDLMDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELG----TVEAGRATRRLTKAS--R 153 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTC----SHHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCC----CchHHHHHHHHHHHH--H
Confidence 999999999999 9999999999999863 122346677778888 8
Q ss_pred cchhhhHHHhhhCCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccc
Q 021668 174 GVLAGRIMEINSKGK-DVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKK 252 (309)
Q Consensus 174 ~~~~GQ~~Dl~~~~~-~~s~~~~~~i~~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~ 252 (309)
+||.||++|+.+..+ ++++++|..|+.+|||+||++||++|++++|++++.++.+++||+++|+||||+||++|+++|+
T Consensus 154 ~l~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~gd~ 233 (352)
T 3nf2_A 154 SLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDP 233 (352)
T ss_dssp HHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHcccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh
Confidence 999999999999876 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcC--------CCCchhhhhh--------------------------------------------hHHHHHHHHHHHHH
Q 021668 253 KEAG--------DDEATYPKLM--------------------------------------------GVAGAKRYAKELVA 280 (309)
Q Consensus 253 ~~~G--------~gK~T~p~l~--------------------------------------------gle~A~~~a~~~~~ 280 (309)
+.+| +||.|||+++ +++++++.+++|.+
T Consensus 234 ~~~GK~~g~Dl~egK~Tlpvi~al~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~li~~~g~~~~a~~~a~~~~~ 313 (352)
T 3nf2_A 234 DATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQHT 313 (352)
T ss_dssp HHHSSCTTHHHHTTCCCHHHHHHHHHCSHHHHHHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred hhhCCCcCcccccCCccHHHHHHHHhCChHHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHH
Confidence 8877 7999999764 34667899999999
Q ss_pred HHHHHhccCCC--CCHHHHHHHHHHHHhccC
Q 021668 281 EANQELAYFDP--TRAAPLYHLADFLVSRHK 309 (309)
Q Consensus 281 ~A~~~L~~l~~--~~~~~L~~l~~~l~~R~~ 309 (309)
+|++.|+.+|. +.++.|..|++|+++|.+
T Consensus 314 ~A~~~L~~lp~~~~~r~~L~~la~~~~~R~~ 344 (352)
T 3nf2_A 314 IAIEALDAVDMPDRVRDRFTALADFVVVRKR 344 (352)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHhccc
Confidence 99999999964 467899999999999973
No 23
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=7.8e-46 Score=353.23 Aligned_cols=234 Identities=21% Similarity=0.263 Sum_probs=197.1
Q ss_pred hHHHHHHHHHHHHHHHHhccCCccc-------ccccccCCCCCCcchHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHhh
Q 021668 62 QIDEYMTLKAKKINKALFEGAAVPL-------ILQYPTLPNHEGERVHGTLCIASCELVGGNESSVMPLACAAEMLVTLA 134 (309)
Q Consensus 62 ~~~~~l~~~~~~i~~~l~~~~~~~~-------~~~y~l~~~~gGKrlRP~L~ll~~~~~g~~~~~~~~~AaaiEliH~aS 134 (309)
++...++..+..|++.|.+ .++. .++|.+.. ||||+||.|++++++++|++.+.++++|+++||||++|
T Consensus 8 ~~~~~i~~~l~~v~~~l~~--~~~~~~~~l~~~~~y~~~~--gGKrlRp~l~l~~~~~~g~~~~~~~~~A~aiEliH~as 83 (334)
T 3rmg_A 8 LIKTPIEAELEDFKALFDT--PLSDSNALLDSVITHIRKR--NGKMMRPILVLLVARLYGAVTPATLHAAVSLELLHTAS 83 (334)
T ss_dssp HHHGGGHHHHHHHHHHTC------CCCHHHHHHHHHTCC------CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--HhccCcHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 4555677778888888888 4431 18999988 99999999999999999999999999999999999999
Q ss_pred H------------------------------HHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHhccccchhhhHHHhh
Q 021668 135 L------------------------------NRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEIN 184 (309)
Q Consensus 135 L------------------------------GD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~la~~~G~~~~~~GQ~~Dl~ 184 (309)
| ||+|++.||+++++.. .. +++..+++++ .+||.||.+|+.
T Consensus 84 LiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~----~~---~~~~~~~~~~--~~~~~GQ~ldl~ 154 (334)
T 3rmg_A 84 LVHDDVVDESTERRGQLSVNAIFNNKVSVLAGDYLLATSLVHAEQTN----NY---EIIRLVSSLG--QKLAEGELLQLS 154 (334)
T ss_dssp HHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----CH---HHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHcCccCCCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCC----cH---HHHHHHHHHH--HHHHHHHHHHHH
Confidence 9 9999999999999852 22 3445567777 789999999999
Q ss_pred hCCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcC-------
Q 021668 185 SKGK-DVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG------- 256 (309)
Q Consensus 185 ~~~~-~~s~~~~~~i~~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G------- 256 (309)
+..+ ++++++|..|+.+|||+||++||++|++++|++++.++.+++||+++|+||||+||++|++ +++.+|
T Consensus 155 ~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~-~~~~~GK~~g~Dl 233 (334)
T 3rmg_A 155 NVSNHSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYF-DSKKIGKPTGNDM 233 (334)
T ss_dssp CCCC--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTS-CC------CCHHH
T ss_pred hCCCCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCC-ChhhcCCCchhhh
Confidence 9866 6899999999999999999999999999999999999999999999999999999999999 566666
Q ss_pred -CCCchhhhhh--------------------------------------hHHHHHHHHHHHHHHHHHHhccCCC-CCHHH
Q 021668 257 -DDEATYPKLM--------------------------------------GVAGAKRYAKELVAEANQELAYFDP-TRAAP 296 (309)
Q Consensus 257 -~gK~T~p~l~--------------------------------------gle~A~~~a~~~~~~A~~~L~~l~~-~~~~~ 296 (309)
+||.|||+++ +++++++.+++|.++|++.|+.+|. +.++.
T Consensus 234 ~egK~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~v~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~lp~~~~~~~ 313 (334)
T 3rmg_A 234 LEGKLTLPALYALNTTKDAWAEQIAFKVKEGTATPDEIVRLIEFTKDNGGIEYACRTIEQYKKKAFDLLAALPDSNICLA 313 (334)
T ss_dssp HTTCCCHHHHHHHHHHCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred hcCchHHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 8999999875 5788899999999999999999964 46789
Q ss_pred HHHHHHHHHhccC
Q 021668 297 LYHLADFLVSRHK 309 (309)
Q Consensus 297 L~~l~~~l~~R~~ 309 (309)
|.+|++|+++|.+
T Consensus 314 L~~l~~~~~~R~~ 326 (334)
T 3rmg_A 314 LRTYLDYVVAREK 326 (334)
T ss_dssp HHHHHHHHHHCC-
T ss_pred HHHHHHHHHhccc
Confidence 9999999999974
No 24
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=6.1e-46 Score=346.66 Aligned_cols=205 Identities=20% Similarity=0.321 Sum_probs=185.4
Q ss_pred cccccCCCCCCcchHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHhhH--------------------------------
Q 021668 88 LQYPTLPNHEGERVHGTLCIASCELVGGNESSVMPLACAAEMLVTLAL-------------------------------- 135 (309)
Q Consensus 88 ~~y~l~~~~gGKrlRP~L~ll~~~~~g~~~~~~~~~AaaiEliH~aSL-------------------------------- 135 (309)
++|.+.. ||||+||.|++++++++|++.+.++++|+++||||+|||
T Consensus 38 ~~y~~~~--gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLIHDDIP~~D~s~~RRG~pt~h~~~G~~~AIl~ 115 (284)
T 2ftz_A 38 MLYSATV--GGXRIRPLLVLTLGEDLGVEEEXLLDVAVAVELFHTASLIHDDLPPIDNADFRRGXPSCHRTYGEDIALLA 115 (284)
T ss_dssp HHHHHHS--CCCCHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHH
T ss_pred HHHHHhC--CCCcHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhCCchhcCCCCCCCCCccHHhhcCHHHHHHH
Confidence 8899888 999999999999999999998889999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHhccccchhhhHHHhhhCCC--CCCHHHHHHHHHhchHHHHHHHHHH
Q 021668 136 NRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKGK--DVSLSELDFIKRLRCGKLIEASVVC 213 (309)
Q Consensus 136 GD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~la~~~G~~~~~~GQ~~Dl~~~~~--~~s~~~~~~i~~~KTg~Lf~~a~~~ 213 (309)
||+|++.||+++++.. +. +++..+++++ .+|+.||.+|+.+.++ ++++++|..|+++|||+||++||++
T Consensus 116 GD~Ll~~a~~~l~~~~----~~---~~~~~l~~~~--~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ 186 (284)
T 2ftz_A 116 GDGLFFLAFSQISXIG----NS---XIFEEFSETA--YXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSA 186 (284)
T ss_dssp HHHHHHHHHHHHHTTC----CH---HHHHHHHHHH--HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC----hH---HHHHHHHHHH--HHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHH
Confidence 9999999999999862 22 4566677777 8999999999998765 6899999999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcC-------CCCchhhhhhhHHHHHHHHHHHHHHHHHHh
Q 021668 214 GVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG-------DDEATYPKLMGVAGAKRYAKELVAEANQEL 286 (309)
Q Consensus 214 Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G-------~gK~T~p~l~gle~A~~~a~~~~~~A~~~L 286 (309)
|++++|++++ .+++||.++|+||||+||++|++++++.+| . |.|||++++++++++.+++|.++|++.|
T Consensus 187 ga~lag~~~~---~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~-K~T~p~l~~l~~a~~~a~~~~~~A~~~L 262 (284)
T 2ftz_A 187 PFILXGXDHT---XMXLLGEXFGVAFQIYDDLXDILGSFEKVGKDLGKDTE-XVTLVXXVGIQXAREMADXYYEEVLXGI 262 (284)
T ss_dssp HHHHHTCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCC------------CHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCChh---HHHHHHHHHHHHHHHHHhhhhhcCCHHhhCCCcchhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998876 899999999999999999999999998877 4 9999999999999999999999999999
Q ss_pred ccCCCCCHHH-HHHHHHHHHhc
Q 021668 287 AYFDPTRAAP-LYHLADFLVSR 307 (309)
Q Consensus 287 ~~l~~~~~~~-L~~l~~~l~~R 307 (309)
+.++.+.++. |.+|++|+++|
T Consensus 263 ~~l~~~~~~~~L~~l~~~~~~R 284 (284)
T 2ftz_A 263 ESEGLFRTLFLLXELXQMVEER 284 (284)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTC
T ss_pred HhCCchhHHHHHHHHHHHHHcC
Confidence 9996445677 99999999987
No 25
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=100.00 E-value=1.8e-45 Score=350.69 Aligned_cols=237 Identities=18% Similarity=0.230 Sum_probs=203.1
Q ss_pred hHHHHHHHHHHHHHHHHhccC--Ccccc---cccccCCCCCCcchHHHHHHHHHHHhCC--CchhhhhHHHHHHHHHHhh
Q 021668 62 QIDEYMTLKAKKINKALFEGA--AVPLI---LQYPTLPNHEGERVHGTLCIASCELVGG--NESSVMPLACAAEMLVTLA 134 (309)
Q Consensus 62 ~~~~~l~~~~~~i~~~l~~~~--~~~~~---~~y~l~~~~gGKrlRP~L~ll~~~~~g~--~~~~~~~~AaaiEliH~aS 134 (309)
+..+.+++.+..|++.|.+.+ ..|.. ++|.+.. ||||+||.|++++++ +|+ +.+.++++|+++||||+||
T Consensus 16 ~~~~~i~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~--gGKrlRp~l~l~~~~-~g~~~~~~~~~~~A~aiEliH~as 92 (334)
T 3pko_A 16 RQFPQVEPQLTALQDYLLRTVQLDNQPIHHKILALLKS--GGKLLRPGYFYLFST-FGNAATPAQLQAGAAAIEILHVGT 92 (334)
T ss_dssp GGCTTTHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHH--CCCCHHHHHHHHHHT-TCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhC--CCCcHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHH
Confidence 333445666777777777722 11211 8899988 999999999999999 665 7788999999999999999
Q ss_pred H------------------------------HHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHhccccchhhhHHHhh
Q 021668 135 L------------------------------NRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEIN 184 (309)
Q Consensus 135 L------------------------------GD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~la~~~G~~~~~~GQ~~Dl~ 184 (309)
| ||+|++.||+++++... + .. ++..+++++ .+||.||.+|+.
T Consensus 93 LiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~--~-~~---~~~~~~~~~--~~~~~Gq~~dl~ 164 (334)
T 3pko_A 93 LIHDDVIDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTT--D-RS---LIQNHIDAM--HRILQGELHQMD 164 (334)
T ss_dssp HHHHHHHHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC--C-HH---HHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHhCccCCCCCCcCCCccHHHHcCchHHHHHHHHHHHHHHHHHHhcCC--C-HH---HHHHHHHHH--HHHHHHHHHHHH
Confidence 9 99999999999998632 1 23 345566777 789999999999
Q ss_pred hCCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcC-------
Q 021668 185 SKGK-DVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG------- 256 (309)
Q Consensus 185 ~~~~-~~s~~~~~~i~~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G------- 256 (309)
+..+ ++++++|..|+.+|||+||++||++|++++|++++.++.+++||+++|+||||+||++|++++++.+|
T Consensus 165 ~~~~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl 244 (334)
T 3pko_A 165 LNYREDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDL 244 (334)
T ss_dssp TTTCTTCCHHHHHHHHHHTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTSCCHHHHHHH
T ss_pred hccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCCcc
Confidence 8765 78999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred -CCCchhhhhhhH-----------------------------------HHHHHHHHHHHHHHHHHhccCCC-CCHHHHHH
Q 021668 257 -DDEATYPKLMGV-----------------------------------AGAKRYAKELVAEANQELAYFDP-TRAAPLYH 299 (309)
Q Consensus 257 -~gK~T~p~l~gl-----------------------------------e~A~~~a~~~~~~A~~~L~~l~~-~~~~~L~~ 299 (309)
+||.|||+++++ +++++.+++|.++|++.|+.+|. +.++.|.+
T Consensus 245 ~egK~Tlp~i~al~~~~~~l~~~l~~~~~~~~~~~~~i~~li~~~ga~~~a~~~~~~~~~~A~~~L~~lp~~~~~~~L~~ 324 (334)
T 3pko_A 245 RSGVYSLPLLLSLSHAPRDFHKLLKKKQAMTLEDIKHVQALVAQYDGVGAAKQLAQDYTDRALTLIQQLPVGSAQQSLEQ 324 (334)
T ss_dssp HTTCCCHHHHHHGGGSHHHHHHHHTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCSSHHHHHHHH
T ss_pred ccCchhHHHHHHHHhCcHHHHHHHhcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 899999998754 57899999999999999999965 46789999
Q ss_pred HHHHHHhccC
Q 021668 300 LADFLVSRHK 309 (309)
Q Consensus 300 l~~~l~~R~~ 309 (309)
|++|+.+|++
T Consensus 325 l~~~~~~R~~ 334 (334)
T 3pko_A 325 LTRLLLRRDH 334 (334)
T ss_dssp HHHHHTTCC-
T ss_pred HHHHHHhccC
Confidence 9999999975
No 26
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=100.00 E-value=5.7e-45 Score=346.12 Aligned_cols=235 Identities=21% Similarity=0.299 Sum_probs=204.5
Q ss_pred hHHHHHHHHHHHHHHHHhccCCcc----cc---cccccCCCCCCcchHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHhh
Q 021668 62 QIDEYMTLKAKKINKALFEGAAVP----LI---LQYPTLPNHEGERVHGTLCIASCELVGGNESSVMPLACAAEMLVTLA 134 (309)
Q Consensus 62 ~~~~~l~~~~~~i~~~l~~~~~~~----~~---~~y~l~~~~gGKrlRP~L~ll~~~~~g~~~~~~~~~AaaiEliH~aS 134 (309)
.+...+++....|++.|.+ .++ .. ++|.+.. ||||+||.|++++++++|++.+.++++|+++||||+||
T Consensus 5 ~~~~~~~~~~~~v~~~l~~--~~~~~~~~l~~~~~~~~~~--gGKr~Rp~l~l~~~~~~g~~~~~~~~~A~avEliH~as 80 (325)
T 3aqb_B 5 SYKAFLNPYIIEVEKRLYE--CIQSDSETINKAAHHILSS--GGKRVRPMFVLLSGFLNDTQKDDLIRTAVSLELVHMAS 80 (325)
T ss_dssp CHHHHHHHHHHHHHHHHHH--HHCCSSHHHHHHHHHHHHS--CCCCHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH--HhcccchHHHHHHHHHHhC--CCCcHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 3445666677778888777 332 11 8898888 99999999999999999988888999999999999999
Q ss_pred H------------------------------HHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHhccccchhhhHHHhh
Q 021668 135 L------------------------------NRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEIN 184 (309)
Q Consensus 135 L------------------------------GD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~la~~~G~~~~~~GQ~~Dl~ 184 (309)
| ||+|++.||+++++.. . .+++..+++++ .+||.||.+|+.
T Consensus 81 LiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~----~---~~~~~~~~~~~--~~~~~GQ~~dl~ 151 (325)
T 3aqb_B 81 LVHDDYIDNSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIATIN----N---SKFHQIFSKTI--LEVCFGEFDQMA 151 (325)
T ss_dssp HHHHHHHHTCCEETTEECHHHHTCHHHHHHHHHHHHHHHHHHTTTCC----C---HHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHhCccccCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhCC----h---HHHHHHHHHHH--HHHHHHHHHHHH
Confidence 9 9999999999999852 2 34455667777 789999999999
Q ss_pred hCCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcC-------
Q 021668 185 SKGK-DVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG------- 256 (309)
Q Consensus 185 ~~~~-~~s~~~~~~i~~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G------- 256 (309)
+.++ ++++++|..|+.+|||+||++||++|++++|++++.++.+++||.++|+||||+||++|++++++.+|
T Consensus 152 ~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~g~Dl 231 (325)
T 3aqb_B 152 DRFNYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDI 231 (325)
T ss_dssp TTTCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHH
T ss_pred cccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCccchHh
Confidence 8876 68999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred -CCCchhhhhhhHH---------------------------------------HHHHHHHHHHHHHHHHhccCCC-CCHH
Q 021668 257 -DDEATYPKLMGVA---------------------------------------GAKRYAKELVAEANQELAYFDP-TRAA 295 (309)
Q Consensus 257 -~gK~T~p~l~gle---------------------------------------~A~~~a~~~~~~A~~~L~~l~~-~~~~ 295 (309)
+||.|||++++++ ++++.+++|.++|++.|+.+|. +.++
T Consensus 232 ~~gk~T~p~i~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~ 311 (325)
T 3aqb_B 232 RNGHITYPLMAAIANLKEQDDDKLEAVVKHLTSTSDDEVYQYIVSQVKQYGIEPAELLSRKYGDKAKYHLSQLQDSNIKD 311 (325)
T ss_dssp HTTCCCHHHHHHHHHHHHTTCCHHHHHHHTCCTTCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTSCCCHHHH
T ss_pred hCCCccHHHHHHHHhCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence 8999999987654 3367788999999999999964 4577
Q ss_pred HHHHHHHHHHhccC
Q 021668 296 PLYHLADFLVSRHK 309 (309)
Q Consensus 296 ~L~~l~~~l~~R~~ 309 (309)
.|..+++++.+|.+
T Consensus 312 ~L~~l~~~~~~R~~ 325 (325)
T 3aqb_B 312 YLEEIHEKMLKRVY 325 (325)
T ss_dssp HHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHhCcC
Confidence 99999999999975
No 27
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=100.00 E-value=6.9e-45 Score=348.45 Aligned_cols=232 Identities=23% Similarity=0.273 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHHhccC--Ccccc---cccccCCCCC--CcchHHHHHHHHHHHhCCCc-----------------hhhhh
Q 021668 67 MTLKAKKINKALFEGA--AVPLI---LQYPTLPNHE--GERVHGTLCIASCELVGGNE-----------------SSVMP 122 (309)
Q Consensus 67 l~~~~~~i~~~l~~~~--~~~~~---~~y~l~~~~g--GKrlRP~L~ll~~~~~g~~~-----------------~~~~~ 122 (309)
++.....|++.|.+.+ ..|.. ++|.+.. | |||+||.|++++++++|++. +.+++
T Consensus 14 i~~~l~~v~~~l~~~~~~~~~~l~~~~~y~~~~--g~~GKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (348)
T 3apz_A 14 VADELSLLSNKLREMVLAEVPKLASAAEYFFKR--GVQGKQFRSTILLLMATALDVRVPEALIGESTDIVTSELRVRQRG 91 (348)
T ss_dssp THHHHHHHHHGGGGCCCCCCC--------------CCHHHHHHHHHHHHHHTTSCC--------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCChhHHHHHHHHHhC--CCCCccHHHHHHHHHHHHcCCCCccccccccccccccchhHHHHH
Confidence 4455667888888732 11211 8898876 6 99999999999999998642 24688
Q ss_pred HHHHHHHHHHhhH------------------------------HHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHhcc
Q 021668 123 LACAAEMLVTLAL------------------------------NRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGT 172 (309)
Q Consensus 123 ~AaaiEliH~aSL------------------------------GD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~la~~~G~ 172 (309)
+|+++||||+||| ||+|++.||+++++.. .. +++..+++++
T Consensus 92 ~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~----~~---~~~~~~~~~~-- 162 (348)
T 3apz_A 92 IAEITEMIHVASLLHDDVLDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALK----NT---EVVALLATAV-- 162 (348)
T ss_dssp HHHHHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHHHHHHHHHHHTT----CH---HHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhccccCCCCCCCCCCcHHHHhCchHHHHHHHHHHHHHHHHHHhCC----CH---HHHHHHHHHH--
Confidence 9999999999999 9999999999999852 22 3455567777
Q ss_pred ccchhhhHHHhhhCCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhccc
Q 021668 173 RGVLAGRIMEINSKGK-DVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKK 251 (309)
Q Consensus 173 ~~~~~GQ~~Dl~~~~~-~~s~~~~~~i~~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~ 251 (309)
.+||.||++|+.+..+ ++++++|..|+.+|||+||++||++|++++|++++.++.+++||.++|+||||+||++|++++
T Consensus 163 ~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~gd 242 (348)
T 3apz_A 163 EHLVTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGT 242 (348)
T ss_dssp HHHHHHHHHHHTCCHHHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 8899999999988754 588999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhcC--------CCCchhhhhh---------------------------------hHHHHHHHHHHHHHHHHHHhccCC
Q 021668 252 KKEAG--------DDEATYPKLM---------------------------------GVAGAKRYAKELVAEANQELAYFD 290 (309)
Q Consensus 252 ~~~~G--------~gK~T~p~l~---------------------------------gle~A~~~a~~~~~~A~~~L~~l~ 290 (309)
++.+| +||.|+|+++ |++++++.+++|.++|++.|+.+|
T Consensus 243 ~~~~GK~~g~Dl~egK~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~g~l~~a~~~~~~~~~~A~~~L~~l~ 322 (348)
T 3apz_A 243 SASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARELAMEHANLAAAAIGSLP 322 (348)
T ss_dssp TTCTTCSCCHHHHTTCCCHHHHHHHHHCTTHHHHHHTTTTCTHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hhhcCCcchhhHhCCChhHHHHHHHHcCHHHHHHHHhccCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCC
Confidence 98877 8999999987 789999999999999999999996
Q ss_pred CC-------CHHHHHHHHHHHHhccC
Q 021668 291 PT-------RAAPLYHLADFLVSRHK 309 (309)
Q Consensus 291 ~~-------~~~~L~~l~~~l~~R~~ 309 (309)
.. .++.|.+|++++++|.+
T Consensus 323 ~~~~~~~~~~~~~L~~l~~~~~~R~~ 348 (348)
T 3apz_A 323 ETDNEDVKRSRRALIDLTHRVITRNK 348 (348)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCcccccHHHHHHHHHHHHHHHhCcC
Confidence 53 47899999999999975
No 28
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=100.00 E-value=2.2e-43 Score=341.35 Aligned_cols=215 Identities=23% Similarity=0.303 Sum_probs=191.7
Q ss_pred cccccCCCCCCcchHHHHHHHHHHHhCCC------chhhhhHHHHHHHHHHhhH--------------------------
Q 021668 88 LQYPTLPNHEGERVHGTLCIASCELVGGN------ESSVMPLACAAEMLVTLAL-------------------------- 135 (309)
Q Consensus 88 ~~y~l~~~~gGKrlRP~L~ll~~~~~g~~------~~~~~~~AaaiEliH~aSL-------------------------- 135 (309)
++|++.. ||||+||+||+++++++|++ .+.++++|++|||||++||
T Consensus 54 ~~~~~~~--gGKrlRp~l~l~~~~~~g~~~~~~~~~~~~~~~AaaiEliH~asLIHDDImD~s~~RRG~pt~h~~f~~~~ 131 (380)
T 3lk5_A 54 LRSFVLN--GGKRIRPLYAWAGFLAAQGHKNSSEKLESVLDAAASLEFIQACALIHDDIIDSSDTRRGAPTVHRAVEADH 131 (380)
T ss_dssp HHHHHHS--CCCCHHHHHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHTC------------------
T ss_pred HHHHHhC--CCcchhHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHHHHCCCcCCCCCCCCCcchhHHHHHhh
Confidence 7777778 99999999999999999874 6788999999999999999
Q ss_pred --------------------HHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHhccccchhhhHHHhhhCCC-CCCHHH
Q 021668 136 --------------------NRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKGK-DVSLSE 194 (309)
Q Consensus 136 --------------------GD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~la~~~G~~~~~~GQ~~Dl~~~~~-~~s~~~ 194 (309)
||+|+++||+++++. +.+++...+++..++.+. .+||.||++|+.+..+ +.++++
T Consensus 132 ~~~~~~~~~~~~G~~~AIL~GD~Ll~~A~~~l~~~--~~~~~~~~~~~~~~~~~~--~~~~~GQ~lDl~~~~~~~~s~~~ 207 (380)
T 3lk5_A 132 RANNFEGDPEHFGVSVSILAGDMALVWAEDMLQDS--GLSAEALARTRDAWRGMR--TEVIGGQLLDIYLESHANESVEL 207 (380)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTTCCCHHH
T ss_pred hhcccccchhhcCHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHhccCCCCCHHH
Confidence 999999999999985 345566667777777766 7899999999998755 678999
Q ss_pred HHHHHHhchHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcC--------CCCchhhhh
Q 021668 195 LDFIKRLRCGKL-IEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG--------DDEATYPKL 265 (309)
Q Consensus 195 ~~~i~~~KTg~L-f~~a~~~Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G--------~gK~T~p~l 265 (309)
|..|+++|||+| |++||++|++++|++++.++.+++||+++|+||||+||+||+++|++.+| +||.|+|++
T Consensus 208 y~~ii~~KTa~L~~~~~~~~Ga~laga~~~~~~~l~~~G~~lG~AFQI~DDiLd~~gd~~~~GK~~g~Dl~egK~T~p~i 287 (380)
T 3lk5_A 208 ADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAFQLRDDLLGVFGDPAITGKPAGDDIREGKRTVLLA 287 (380)
T ss_dssp HHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHH
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHH
Confidence 999999999999 89999999999999999999999999999999999999999999998887 899999986
Q ss_pred h----------------------------------------hHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHH
Q 021668 266 M----------------------------------------GVAGAKRYAKELVAEANQELAYFDP--TRAAPLYHLADF 303 (309)
Q Consensus 266 ~----------------------------------------gle~A~~~a~~~~~~A~~~L~~l~~--~~~~~L~~l~~~ 303 (309)
+ +++++++.+++|.++|++.|+.+|. +.++.|.+|+++
T Consensus 288 ~al~~~~~~~~~~~~~L~~~l~~~~~~~~~~~v~~li~~~Ga~~~~~~~~~~~~~~A~~~L~~lp~~~~~r~~L~~La~~ 367 (380)
T 3lk5_A 288 LALQRADKQSPEAATAIRAGVGKVTSPEDIAVITEHIRATGAEEEVEQRISQLTESGLAHLDDVDIPDEVRAQLRALAIR 367 (380)
T ss_dssp HHHHHHHHHCHHHHHHHHHHTTTCCSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHGGGSCCCHHHHHHHHHHHHH
T ss_pred HHHHhCccCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 5 4677889999999999999999973 478899999999
Q ss_pred HHhcc
Q 021668 304 LVSRH 308 (309)
Q Consensus 304 l~~R~ 308 (309)
+..|.
T Consensus 368 ~~~~~ 372 (380)
T 3lk5_A 368 STERR 372 (380)
T ss_dssp HHC--
T ss_pred HHHhh
Confidence 99885
No 29
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=100.00 E-value=1.5e-43 Score=337.10 Aligned_cols=212 Identities=23% Similarity=0.199 Sum_probs=186.0
Q ss_pred cccccCCCCCCcchHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHhhH------------------------------HH
Q 021668 88 LQYPTLPNHEGERVHGTLCIASCELVGGNESSVMPLACAAEMLVTLAL------------------------------NR 137 (309)
Q Consensus 88 ~~y~l~~~~gGKrlRP~L~ll~~~~~g~~~~~~~~~AaaiEliH~aSL------------------------------GD 137 (309)
++|.+.. ||||+||.|++++++++|++.+.++++|+++||||++|| ||
T Consensus 31 ~~~~~~~--gGKrlRp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLihDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD 108 (330)
T 1wmw_A 31 LQDYPRR--GGKMLRGLLTVYSALAHGAPLEAGLEAATALELFQNWVLVHDDIEDGSEERRGRPALHRLHPMPLALNAGD 108 (330)
T ss_dssp HHHHHHT--CCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECHHHHSCHHHHHHHHH
T ss_pred HHHHHhC--CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCCCCccccccCchHHHHHHH
Confidence 8898878 999999999999999999988889999999999999999 99
Q ss_pred HHHHHHHHHHHhcc-CCCChHHHHHHHHHHHHHhccccchhhhHHHhhh-CCC--CCCHHHHHHHHHhchHHH-HHHHHH
Q 021668 138 ALLCYAVEHMATKT-KNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINS-KGK--DVSLSELDFIKRLRCGKL-IEASVV 212 (309)
Q Consensus 138 ~Ll~~Af~~l~~~~-~~~~~~~~~~~~~~la~~~G~~~~~~GQ~~Dl~~-~~~--~~s~~~~~~i~~~KTg~L-f~~a~~ 212 (309)
+|++.||+++++.. .+.++. +++..+++++ .+||.||.+|+.+ .++ ++++++|..|+.+|||+| |++||+
T Consensus 109 ~L~~~a~~~l~~~~~~~~~~~---~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~ 183 (330)
T 1wmw_A 109 AMHAEMWGLLAEGLARGLFPP---EVLLEFHEVV--RRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLR 183 (330)
T ss_dssp HHHHHHHHHHHHHHHTTSSCH---HHHHHHHHHH--HHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccHH---HHHHHHHHHH--HHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHH
Confidence 99999999999853 122223 4555667777 8899999999998 654 689999999999999999 999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcC--------CCCchhhhhhhH----------------
Q 021668 213 CGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG--------DDEATYPKLMGV---------------- 268 (309)
Q Consensus 213 ~Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G--------~gK~T~p~l~gl---------------- 268 (309)
+|++++|++++.+ +++||.++|+||||+||++|++++++ +| +||.|||+++++
T Consensus 184 ~ga~lag~~~~~~--l~~~g~~lG~aFQi~DD~ld~~~d~~-~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~l~~~~~ 260 (330)
T 1wmw_A 184 LGALLAGKTPPAA--YEEGGLRLGTAFQIVDDVLNLEGGEA-YGKERAGDLYEGKRTLILLRFLEEAPPEERARALALLA 260 (330)
T ss_dssp HHHHHTTCCCCHH--HHHHHHHHHHHHHHHHHHHHHSCSCC-CSSSTTHHHHHTCCCHHHHHHHHHSCHHHHHHHHHHHT
T ss_pred HHHHHcCCCHHHH--HHHHHHHHHHHHHHHHccCcccCCcc-cCCCcCchhhCCCCCHHHHHHHHhCCHHHHHHHHHHHc
Confidence 9999999987766 99999999999999999999999988 87 799999987643
Q ss_pred ------------------------HHHHHHHHHHHHHHHHHhc----cCCC-CCHHHHHHHHHHHHhccC
Q 021668 269 ------------------------AGAKRYAKELVAEANQELA----YFDP-TRAAPLYHLADFLVSRHK 309 (309)
Q Consensus 269 ------------------------e~A~~~a~~~~~~A~~~L~----~l~~-~~~~~L~~l~~~l~~R~~ 309 (309)
+++++.+++|.++|++.|+ .+|. +.++.|..|++++.+|.+
T Consensus 261 ~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~~i~~lp~~~~~~~L~~l~~~~~~R~~ 330 (330)
T 1wmw_A 261 LPREAKPEAEVGWLLERLLASRALAWAKAEAKRLQAEGLALLEAAFQDLPGKEALDHLRGLLAALVERRA 330 (330)
T ss_dssp SCGGGSCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTGGGGCSCHHHHHHHHHHHHHHHHC--
T ss_pred CcccCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccC
Confidence 4567889999999999999 8864 467899999999999974
No 30
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=100.00 E-value=2e-43 Score=330.53 Aligned_cols=228 Identities=19% Similarity=0.213 Sum_probs=199.6
Q ss_pred chhhHHHHHHHHHHHHHHHHhccCCccc-----c---cccccCCCCCCcchHHHHHHHHHHHhCCCchhhhhHHHHHHHH
Q 021668 59 PEIQIDEYMTLKAKKINKALFEGAAVPL-----I---LQYPTLPNHEGERVHGTLCIASCELVGGNESSVMPLACAAEML 130 (309)
Q Consensus 59 ~~~~~~~~l~~~~~~i~~~l~~~~~~~~-----~---~~y~l~~~~gGKrlRP~L~ll~~~~~g~~~~~~~~~AaaiEli 130 (309)
.-|.+..++++....|++.|.+ .++. . ++|.+ . ||||+||.|++++++++|++++.++++|+++|||
T Consensus 7 ~~~~~~~~~~~~~~~v~~~l~~--~l~~~~~~~l~~~~~y~~-~--gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEli 81 (289)
T 2azj_A 7 HHMSIIEFWLEAKATIDRLIEQ--FLNSNRDWDLVDISSYIL-K--DGKRFRGTLNMFFTVALGGDIKDSYGGALAIEIL 81 (289)
T ss_dssp --CHHHHHHHHHHHHHHHHHHH--HHHHCSCTTHHHHHHHHH-S--CCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHHHH--HhcccChHHHHHHHHHHh-c--CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3477889999999999999988 4421 1 88876 3 8999999999999999999888899999999999
Q ss_pred HHhhH------------------------------HHHHHHHHHHHH-HhccCCCChHHHHHHHHHHHHHhccccchhhh
Q 021668 131 VTLAL------------------------------NRALLCYAVEHM-ATKTKNVSPDRLVRAIGEISSAVGTRGVLAGR 179 (309)
Q Consensus 131 H~aSL------------------------------GD~Ll~~Af~~l-~~~~~~~~~~~~~~~~~~la~~~G~~~~~~GQ 179 (309)
|++|| ||+|++.||+++ ++.. + +++..+++++ .+||+||
T Consensus 82 H~asLIHDDi~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~----~----~~~~~~~~~~--~~~~~GQ 151 (289)
T 2azj_A 82 HSASLALCDIVDLDATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQTSYG----D----DALNTSIELW--KDTSVGA 151 (289)
T ss_dssp HHHHHHHHHHHTTCCBSSSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----H----HHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHhCCCCCCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcCc----H----HHHHHHHHHH--HHHHHHH
Confidence 99999 999999999999 8852 2 3456667777 8899999
Q ss_pred HHHhhhCCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcC-CC
Q 021668 180 IMEINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG-DD 258 (309)
Q Consensus 180 ~~Dl~~~~~~~s~~~~~~i~~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G-~g 258 (309)
.+|+.+ +++|.+|+++|||+||++||++|++++ ++++.++.+++||.++|+||||+||++|++++.+... +|
T Consensus 152 ~~dl~~------~~~y~~~i~~KTa~L~~~a~~~ga~la-~~~~~~~~l~~~g~~lG~aFQi~DDilD~~~~~K~dl~~g 224 (289)
T 2azj_A 152 LRDMYD------NSDYIRTIELKTGSLFKLSTVLSAYAS-KHYNTKQQMLDVGKYLGIIYQVIDDFVDYKTKKVEEIDGS 224 (289)
T ss_dssp HHTTTT------TSCHHHHHHHHTHHHHHHHHHHHHHHT-TCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTCCTT
T ss_pred HHHHhh------HHHHHHHHHcchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCChhhhcC
Confidence 999975 467888999999999999999999999 9999999999999999999999999999999754322 78
Q ss_pred Cchhhhhh---hHHHH-HHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHHHHhcc
Q 021668 259 EATYPKLM---GVAGA-KRYAKELVAEANQELAYFDP--TRAAPLYHLADFLVSRH 308 (309)
Q Consensus 259 K~T~p~l~---gle~A-~~~a~~~~~~A~~~L~~l~~--~~~~~L~~l~~~l~~R~ 308 (309)
|.|+|.++ +.+.+ +..+++|.++|++.|+.+|. +.++.|.++++|+++|.
T Consensus 225 k~Tlp~l~~~~g~~~a~~~~a~~~~~~A~~~L~~lp~~~~~~~~L~~l~~~~~~R~ 280 (289)
T 2azj_A 225 AKQLFKYYREGKLEEYVRSVYLEYKQKYDELISNIPFQSKYLSEIRSLPEFLANGL 280 (289)
T ss_dssp GGGGHHHHTTTCHHHHHHHHHHHHHHHHHHHHHTSCCCGGGHHHHHTHHHHHHHHH
T ss_pred cccHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcc
Confidence 99999999 88888 88999999999999999964 46889999999999985
No 31
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=100.00 E-value=4.4e-42 Score=331.90 Aligned_cols=240 Identities=12% Similarity=0.148 Sum_probs=199.2
Q ss_pred hhHHHHHHHHHHHHHHHHhccCCccc--------c----cccccCCCCCCcchHHHHHHHHHHHhCCCc----h---hhh
Q 021668 61 IQIDEYMTLKAKKINKALFEGAAVPL--------I----LQYPTLPNHEGERVHGTLCIASCELVGGNE----S---SVM 121 (309)
Q Consensus 61 ~~~~~~l~~~~~~i~~~l~~~~~~~~--------~----~~y~l~~~~gGKrlRP~L~ll~~~~~g~~~----~---~~~ 121 (309)
..++.|++.+...|++.++. .++. . ++|.+ . ||||+||+||+++++++|++. + .+.
T Consensus 33 ~~~~~~~~~~~~~v~~~l~~--~~~~~~~~~~~~~l~~~~~y~~-~--gGKrlRp~l~l~~~~~~~~~~~~~~~~~~~a~ 107 (374)
T 2qis_A 33 QEKQDFVQHFSQIVRVLTED--EMGHPEIGDAIARLKEVLEYNA-I--GGKYNRGLTVVVAFRELVEPRKQDADSLQRAW 107 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--C--CGGGHHHHHHHHHHHHHHS-S--SSCCHHHHHHHHHHHHHSCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--hhccccccchHHHHHHHHHhhc-C--CCcchHHHHHHHHHHHhCCCCccchHHHHHHH
Confidence 45778999999999999988 4321 1 78876 6 999999999999999998752 2 467
Q ss_pred hHHHHHHHHHHhhH-------------------------------HHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHh
Q 021668 122 PLACAAEMLVTLAL-------------------------------NRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAV 170 (309)
Q Consensus 122 ~~AaaiEliH~aSL-------------------------------GD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~la~~~ 170 (309)
++|++|||||+||| ||++++.+|+++++...+. ....+++..+++++
T Consensus 108 ~~A~avEliH~asLIHDDImD~s~~RRG~pt~h~~~G~~~~Ai~~g~~l~~~a~~~l~~~~~~~--~~~~~~~~~~~~~~ 185 (374)
T 2qis_A 108 TVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQ--PYYLNLIELFLQSS 185 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEETTEECGGGSTTTGGGHHHHHHHHHHHHHHHHHHHHTTS--TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccccCCCCCCCCCccHHHhcCchHHHHHHHHHHHHHHHHHHHHhhccc--ccHHHHHHHHHHHH
Confidence 89999999999999 8999999999999853221 12334555566676
Q ss_pred ccccchhhhHHHhhhCCC------CCCHHHHHHHHHhchHHH-HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHH
Q 021668 171 GTRGVLAGRIMEINSKGK------DVSLSELDFIKRLRCGKL-IEASVVCGVLIGG-GSEEDIEKLRKYGKCVGLAYQVW 242 (309)
Q Consensus 171 G~~~~~~GQ~~Dl~~~~~------~~s~~~~~~i~~~KTg~L-f~~a~~~Gailag-~~~~~~~~l~~~G~~lGlAFQI~ 242 (309)
..+|.||++|+.+... ++++++|..|+.+|||+| |++||++|++++| ++++.++.+++||.++|+||||+
T Consensus 186 --~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a~~~~~~~l~~~g~~lG~aFQI~ 263 (374)
T 2qis_A 186 --YQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQ 263 (374)
T ss_dssp --HHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999998753 278999999999999999 9999999999999 99999999999999999999999
Q ss_pred hchhhhcccchhcC-------CCCchhhhhhhHH------------------------------------HHHHHHHHHH
Q 021668 243 DDILDNMKKKKEAG-------DDEATYPKLMGVA------------------------------------GAKRYAKELV 279 (309)
Q Consensus 243 DDiLD~~~~~~~~G-------~gK~T~p~l~gle------------------------------------~A~~~a~~~~ 279 (309)
||+||+++|++.+| +||.|||++++++ ++++.+++|.
T Consensus 264 DDiLD~~gd~~~~GK~g~Dl~~gK~T~p~l~al~~a~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~ 343 (374)
T 2qis_A 264 DDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSY 343 (374)
T ss_dssp HHHHHHHSCHHHHCSCCCTTTTTCCCHHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHccCChhhcCCchhHHHcCCccHHHHHHHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHH
Confidence 99999999988776 7999999987432 2356688899
Q ss_pred HHHHHHhccCCC-CCHHHHHHHHHHHHhccC
Q 021668 280 AEANQELAYFDP-TRAAPLYHLADFLVSRHK 309 (309)
Q Consensus 280 ~~A~~~L~~l~~-~~~~~L~~l~~~l~~R~~ 309 (309)
++|++.|+.+|. +.++.|..|++++.+|+|
T Consensus 344 ~~a~~~L~~lp~~~~k~~L~~l~~~i~~R~k 374 (374)
T 2qis_A 344 SHIMALIEQYAAPLPPAVFLGLARKIYKRRK 374 (374)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHHC----
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHHcCcC
Confidence 999999999954 578999999999999975
No 32
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=100.00 E-value=7.4e-43 Score=330.22 Aligned_cols=203 Identities=16% Similarity=0.160 Sum_probs=177.7
Q ss_pred cccccCCCCCCcchHHHHHHHHHHHhCCCc--hhhhhHHHHHHHHHHhhH------------------------------
Q 021668 88 LQYPTLPNHEGERVHGTLCIASCELVGGNE--SSVMPLACAAEMLVTLAL------------------------------ 135 (309)
Q Consensus 88 ~~y~l~~~~gGKrlRP~L~ll~~~~~g~~~--~~~~~~AaaiEliH~aSL------------------------------ 135 (309)
..|.+.+ ||||+||.||+++++..+... +.++++|+++||||+|||
T Consensus 27 ~~y~~~~--gGKrlRp~l~l~~~~~~~~~~~~~~~~~~A~aiEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~ 104 (315)
T 3tc1_A 27 ELFSKIG--PSKMLRSKLMLALLNEKTDAILLDKALNLCTIVEMIQTASLLHDDVIDKATMRRKLPSINALFGNFNAVML 104 (315)
T ss_dssp HHHTTCC--CCCCHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC----------------CCSHHHHH
T ss_pred HHHHhcC--CcccHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHcCCCCCCCCcCCCccHHHHhCchHHHHH
Confidence 4688878 999999999999998433322 567799999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHhccccchhhhHHHhhhCCC-CCCHHHHHHHHHhchHHHHHHHHHHH
Q 021668 136 NRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKGK-DVSLSELDFIKRLRCGKLIEASVVCG 214 (309)
Q Consensus 136 GD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~la~~~G~~~~~~GQ~~Dl~~~~~-~~s~~~~~~i~~~KTg~Lf~~a~~~G 214 (309)
||+|++.||+++++.. .+++..+++++ .+||.||.+|+.+..+ ++++++|..|+++|||+||++||++|
T Consensus 105 GD~L~~~a~~~l~~~~--------~~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~g 174 (315)
T 3tc1_A 105 GDVFYSKAFFELSKMG--------ELIAQALSNAV--LRLSRGEIEDVFVGECFNSDKQKYWRILEDKTAHFIEASLKSM 174 (315)
T ss_dssp HHHHHHHHHHHHTTSC--------HHHHHHHHHHH--HHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCc--------HHHHHHHHHHH--HHHHHHHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHH
Confidence 9999999999999852 24455567777 8899999999999866 78999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcC--------CCCchhhhhh--------------------
Q 021668 215 VLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG--------DDEATYPKLM-------------------- 266 (309)
Q Consensus 215 ailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G--------~gK~T~p~l~-------------------- 266 (309)
++++|++ .+.+++||+++|+||||+||++|++++++.+| +||.|||+++
T Consensus 175 a~lag~~---~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~L~~~l~~~ 251 (315)
T 3tc1_A 175 AILLNKD---AKIYADFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKEGKTTLPYLLLYEKLNQHDQGLLISYFKQD 251 (315)
T ss_dssp HHHTTSC---HHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCTGGGTCCCHHHHHHHTTSCHHHHHHHHHTTTCC
T ss_pred HHHcCCC---HHHHHHHHHHHHHHHHHHHHHhcccCCHHHhCCChhhHHHcCChhHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence 9999998 67899999999999999999999999998877 7999999875
Q ss_pred ----------------hHHHHHHHHHHHHHHHHHHhccCCC-CCHHHHHHHHHHHH
Q 021668 267 ----------------GVAGAKRYAKELVAEANQELAYFDP-TRAAPLYHLADFLV 305 (309)
Q Consensus 267 ----------------gle~A~~~a~~~~~~A~~~L~~l~~-~~~~~L~~l~~~l~ 305 (309)
+++++++.+++|.++|++.|+.+|. +.++.|.+|++|+.
T Consensus 252 ~~~~~~~i~~li~~~ga~~~~~~~~~~~~~~A~~~L~~lp~s~~r~~L~~l~~~~~ 307 (315)
T 3tc1_A 252 SHEIIEWTKEKFKQYGIIEETLKTAQVYSKKALEAIKGENNLILEKLAQDVISRTF 307 (315)
T ss_dssp CHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 5788999999999999999999964 57789999998764
No 33
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=100.00 E-value=3.5e-42 Score=331.27 Aligned_cols=239 Identities=13% Similarity=0.162 Sum_probs=198.0
Q ss_pred hHHHHHHHHHHHHHHHHhccCCc------cc-------ccccccCCCCCCcchHHHHHHHHHHHhCCC----chh---hh
Q 021668 62 QIDEYMTLKAKKINKALFEGAAV------PL-------ILQYPTLPNHEGERVHGTLCIASCELVGGN----ESS---VM 121 (309)
Q Consensus 62 ~~~~~l~~~~~~i~~~l~~~~~~------~~-------~~~y~l~~~~gGKrlRP~L~ll~~~~~g~~----~~~---~~ 121 (309)
++++|+..+...++..++. .. +. .++|.+ . ||||+||.|++++++++|++ .+. ++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~y~~-~--gGKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~ 77 (362)
T 1yhl_A 3 SMERFLSVYDEVQAFLLDQ--LQSKYEIDPNRARYLRIMMDTTC-L--GGKYFRGMTVVNVAEGFLAVTQHDEATKERIL 77 (362)
T ss_dssp THHHHHHHHHHHHHHHHHH--HHHHHCCCHHHHHHHHHHHHHHH-S--SSCCHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--hhcccccchhHHHHHHHHHHhhc-C--CcccHHHHHHHHHHHHhCCCcCCChhhhHHHH
Confidence 4566677666666666655 22 11 177776 6 99999999999999999875 222 35
Q ss_pred h----HHHHHHHHHHhhH--------------------------------HHHHHHHHHHHHHhccCCCChHHHHHHHHH
Q 021668 122 P----LACAAEMLVTLAL--------------------------------NRALLCYAVEHMATKTKNVSPDRLVRAIGE 165 (309)
Q Consensus 122 ~----~AaaiEliH~aSL--------------------------------GD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~ 165 (309)
+ +|++|||||++|| ||+|++.||+++++...+ +....+++..
T Consensus 78 ~~a~~~a~avEliH~asLiHDDI~D~s~~RRG~pt~h~~~g~~~~~Ail~Gd~L~~~a~~~l~~~~~~--~~~~~~~~~~ 155 (362)
T 1yhl_A 78 HDACVGGWMIEFLQAHYLVEDDIMDGSVMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAWHYFAD--RPFLKDLLCL 155 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHSTT--CTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccHHhccCccHhHHHHHHHHHHHHHHHHHHHhccc--chhHHHHHHH
Confidence 5 7789999999999 999999999999986321 2234456666
Q ss_pred HHHHhccccchhhhHHHhhhC-----------C--C----CCCHHHHHHHHHhchHHH-HHHHHHHHHHhcC-CCHHHHH
Q 021668 166 ISSAVGTRGVLAGRIMEINSK-----------G--K----DVSLSELDFIKRLRCGKL-IEASVVCGVLIGG-GSEEDIE 226 (309)
Q Consensus 166 la~~~G~~~~~~GQ~~Dl~~~-----------~--~----~~s~~~~~~i~~~KTg~L-f~~a~~~Gailag-~~~~~~~ 226 (309)
+++++ ..||.||++|+.+. . + ++++++|..|+.+|||+| |++||++|++++| ++++.++
T Consensus 156 ~~~~~--~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~ 233 (362)
T 1yhl_A 156 FQKVD--YATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMN 233 (362)
T ss_dssp HHHHH--HHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHH
T ss_pred HHHHH--HHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 77777 88999999999887 3 2 478999999999999999 9999999999999 8888899
Q ss_pred HHHHHHHHHHHHHHHHhchhhhcccchhcC-------CCCchhhhhh---------------------------------
Q 021668 227 KLRKYGKCVGLAYQVWDDILDNMKKKKEAG-------DDEATYPKLM--------------------------------- 266 (309)
Q Consensus 227 ~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G-------~gK~T~p~l~--------------------------------- 266 (309)
.+++||.++|+||||+||++|++++++.+| +||.|||+++
T Consensus 234 ~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~g~Dl~egK~T~p~l~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~ 313 (362)
T 1yhl_A 234 LVERVAHLIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGDKDPAKVAVVKRLYS 313 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTCCCHHHHHHHTTCCHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCChHHhCCChhhHhcCCchHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999999999999999999988776 7999999875
Q ss_pred ---hHHHHHHHHHHHHHHHHHHhccCCC-CCH--HHHHHHHHHHHhccC
Q 021668 267 ---GVAGAKRYAKELVAEANQELAYFDP-TRA--APLYHLADFLVSRHK 309 (309)
Q Consensus 267 ---gle~A~~~a~~~~~~A~~~L~~l~~-~~~--~~L~~l~~~l~~R~~ 309 (309)
+++++++.+++|.++|++.|+.+|. +.+ +.|..|++++.+|+|
T Consensus 314 ~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~~~L~~l~~~i~~R~~ 362 (362)
T 1yhl_A 314 EANLQADFAAYEAEVVREVESLIEQLKVKSPTFAESVAVVWEKTHKRKK 362 (362)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTCCC
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHhccC
Confidence 3456778899999999999999964 457 899999999999986
No 34
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=100.00 E-value=9.1e-42 Score=320.72 Aligned_cols=188 Identities=19% Similarity=0.215 Sum_probs=165.4
Q ss_pred cccccCCCCCCcchHHHHHHHHHHHhCC-CchhhhhHHHHHHHHHHhhH------------------------------H
Q 021668 88 LQYPTLPNHEGERVHGTLCIASCELVGG-NESSVMPLACAAEMLVTLAL------------------------------N 136 (309)
Q Consensus 88 ~~y~l~~~~gGKrlRP~L~ll~~~~~g~-~~~~~~~~AaaiEliH~aSL------------------------------G 136 (309)
++|.+.. ||||+||.|++++++++|+ +.+.++++|+++||||+||| |
T Consensus 32 ~~y~~~~--gGKrlRp~l~l~~~~~~g~~~~~~~~~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~G 109 (299)
T 1v4e_A 32 IMKDLPL--YGKMLRVRLSILSFKNRGVEIGEDAISSLAALELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAG 109 (299)
T ss_dssp HHTTSCC--CCCCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSEETTEECHHHHHCHHHHHHHH
T ss_pred HHHHHhC--CCCcHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCCchhhhcCHHHHHHHH
Confidence 8899988 9999999999999999998 77888999999999999999 9
Q ss_pred HHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHhccccchhhhHHHhhhCCCCCCHHHHHHHHHhchHHHHHHHHHHHHH
Q 021668 137 RALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVL 216 (309)
Q Consensus 137 D~Ll~~Af~~l~~~~~~~~~~~~~~~~~~la~~~G~~~~~~GQ~~Dl~~~~~~~s~~~~~~i~~~KTg~Lf~~a~~~Gai 216 (309)
|+|++.||+++++.. . .+++..+++++ .+||.||.+|+.+..+.+++++|..|+.+|||+||++||++|++
T Consensus 110 D~L~~~a~~~l~~~~----~---~~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~ 180 (299)
T 1v4e_A 110 DLVLVSAFHTVEEIG----N---NKLRRAFLNVI--GKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPAL 180 (299)
T ss_dssp HHHHHHHHHHHHHHC----C---HHHHHHHHHHH--HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC----h---HHHHHHHHHHH--HHHhhhHHHHHHccCCCCCHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999862 2 34555667777 88999999999988655899999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcC--------CCCchhhhhhhH--------------------
Q 021668 217 IGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG--------DDEATYPKLMGV-------------------- 268 (309)
Q Consensus 217 lag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G--------~gK~T~p~l~gl-------------------- 268 (309)
++|+++ +.+++||.++|+||||+||++|+++| +.+| +||.|||+++++
T Consensus 181 lag~~~---~~l~~~g~~lG~aFQi~DD~lD~~~d-~~~GK~~g~Dl~egK~T~p~l~al~~~~~l~~~l~~~~~~~~~~ 256 (299)
T 1v4e_A 181 LEGELG---EDLYNLGVTIGTIYQMFDDIMDFAGM-EKIGKDGFLDLKNGVASFPLVTAMEKFPEARQMFENRDWSGLMS 256 (299)
T ss_dssp HHTCCC---HHHHHHHHHHHHHHHHHHHHHHHTTC-CSCCTTSSCCCTTTTCCHHHHHHHHHCHHHHHHHHTTCHHHHHH
T ss_pred HcCCCH---HHHHHHHHHHHHHHHHHHHHHHccCc-cccCCCcchHhhCCCchHHHHHHHHhChHHHHHHhHHHHHHHHH
Confidence 999876 89999999999999999999999999 8777 799999998754
Q ss_pred --------HHHHHHHHHHHHHHHHHhccCC
Q 021668 269 --------AGAKRYAKELVAEANQELAYFD 290 (309)
Q Consensus 269 --------e~A~~~a~~~~~~A~~~L~~l~ 290 (309)
+++++.+++|.++|++.|+.++
T Consensus 257 ~l~~~g~~~~~~~~~~~~~~~A~~~L~~l~ 286 (299)
T 1v4e_A 257 FMREKGILKECEETLKVLVKNVIIENSWLR 286 (299)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHCGGGC
T ss_pred HHHHCCcHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4556666777777777777664
No 35
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=100.00 E-value=2.6e-41 Score=325.79 Aligned_cols=239 Identities=14% Similarity=0.194 Sum_probs=199.5
Q ss_pred hHHHHHHHHHHHHHHHHhccCCcc--------cc----cccccCCCCCCcchHHHHHHHHHHHhCCC----ch---hhhh
Q 021668 62 QIDEYMTLKAKKINKALFEGAAVP--------LI----LQYPTLPNHEGERVHGTLCIASCELVGGN----ES---SVMP 122 (309)
Q Consensus 62 ~~~~~l~~~~~~i~~~l~~~~~~~--------~~----~~y~l~~~~gGKrlRP~L~ll~~~~~g~~----~~---~~~~ 122 (309)
+.++|+..+...++..++. .++ .. ++|.+ . ||||+||+||+++++++|++ .+ .+++
T Consensus 27 ~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~l~~~~~y~~-~--gGKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~ 101 (367)
T 1uby_A 27 EREEFVGFFPQIVRDLTED--GIGHPEVGDAVARLKEVLQYNA-P--GGKCNRGLTVVAAYRELSGPGQKDAESLRCALA 101 (367)
T ss_dssp HHHHHHHTHHHHHHHHHTT--TSSCTTTHHHHHHHHHHHHHHS-S--SSCCHHHHHHHHHHHHHCCGGGCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh--hhcccCchhhHHHHHHHHhhhc-C--CCcchhHHHHHHHHHHhCCCccCChhhHHHHHH
Confidence 4667888888888888887 332 11 88887 6 99999999999999999873 22 4789
Q ss_pred HHHHHHHHHHhhH-------------------------------HHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHhc
Q 021668 123 LACAAEMLVTLAL-------------------------------NRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVG 171 (309)
Q Consensus 123 ~AaaiEliH~aSL-------------------------------GD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~la~~~G 171 (309)
+|++|||||+||| ||++++.||+++++...+. ....+++..+++++
T Consensus 102 ~A~aiEliH~asLiHDDImD~s~~RRG~pt~h~~~g~~~~ai~dg~~l~~~a~~~l~~~~~~~--~~~~~~~~~~~~~~- 178 (367)
T 1uby_A 102 VGWCIELFQAASLVADDIMDQSLTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQR--PYYVHLLELFLQTA- 178 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCEETTEECGGGSTTTTTHHHHHHHHHHHHHHHHHHHHHTTS--TTHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhCcccCCCCCCCCCCChhhccCcHHHHHHHHHHHHHHHHHHHHHhcccc--ccHHHHHHHHHHHH-
Confidence 9999999999999 5666688999999853221 12234555566666
Q ss_pred cccchhhhHHHhhhCCC------CCCHHHHHHHHHhchHHH-HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHh
Q 021668 172 TRGVLAGRIMEINSKGK------DVSLSELDFIKRLRCGKL-IEASVVCGVLIGG-GSEEDIEKLRKYGKCVGLAYQVWD 243 (309)
Q Consensus 172 ~~~~~~GQ~~Dl~~~~~------~~s~~~~~~i~~~KTg~L-f~~a~~~Gailag-~~~~~~~~l~~~G~~lGlAFQI~D 243 (309)
..+|.||++|+.+... ++++++|..|+.+|||+| |++||++|++++| ++++.++.+++||.++|+||||+|
T Consensus 179 -~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~D 257 (367)
T 1uby_A 179 -YQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQD 257 (367)
T ss_dssp -HHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999998642 478999999999999999 9999999999999 899999999999999999999999
Q ss_pred chhhhcccchhcC-------CCCchhhhhhhHHH------------------------------------HHHHHHHHHH
Q 021668 244 DILDNMKKKKEAG-------DDEATYPKLMGVAG------------------------------------AKRYAKELVA 280 (309)
Q Consensus 244 DiLD~~~~~~~~G-------~gK~T~p~l~gle~------------------------------------A~~~a~~~~~ 280 (309)
|+||+++|++.+| +||.|||++++++. +++.+++|.+
T Consensus 258 D~LD~~gd~~~~GK~g~Dl~egK~T~p~l~al~~~~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~ 337 (367)
T 1uby_A 258 DYLDCFGDPALTGAVGTDIQDNKCSWLVVQCLQRVTPEQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYR 337 (367)
T ss_dssp HHHHHHCCTTCSSCCCCCSSSCCCCHHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHhcCChhhcCCchhhHHcCCchHHHHHHHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 9999999988777 79999999875542 2356889999
Q ss_pred HHHHHhccCCC-CCHHHHHHHHHHHHhccC
Q 021668 281 EANQELAYFDP-TRAAPLYHLADFLVSRHK 309 (309)
Q Consensus 281 ~A~~~L~~l~~-~~~~~L~~l~~~l~~R~~ 309 (309)
+|++.|+.+|. +.++.|..|++++.+|++
T Consensus 338 ~A~~~L~~lp~~~~k~~L~~l~~~i~~R~~ 367 (367)
T 1uby_A 338 RLQELIEKHSNRLPKEIFLGLAQKIYKRQK 367 (367)
T ss_dssp HHHHHHHHHCSSSCTHHHHHHHHHHCCCCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHhCcC
Confidence 99999999964 578999999999999985
No 36
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=100.00 E-value=8.7e-42 Score=326.08 Aligned_cols=212 Identities=14% Similarity=0.144 Sum_probs=158.8
Q ss_pred cccccCCCCCCcchHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHhhH------------------------------HH
Q 021668 88 LQYPTLPNHEGERVHGTLCIASCELVGGNESSVMPLACAAEMLVTLAL------------------------------NR 137 (309)
Q Consensus 88 ~~y~l~~~~gGKrlRP~L~ll~~~~~g~~~~~~~~~AaaiEliH~aSL------------------------------GD 137 (309)
++|.+.. ||||+||.|++++++++|++.+.++++|+++||||+||| ||
T Consensus 32 ~~y~~~~--gGKrlRp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD 109 (340)
T 2e8v_A 32 YNHILLK--PGKNFRLNLIVQINRVMNLPKDQLAIVSQIVELLHNSSLLIDDIEDNAPLRRGQTTSHLIFGVPSTINTAN 109 (340)
T ss_dssp HHHHHTS--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEETTEECHHHHTCHHHHHHHHH
T ss_pred HHHHHhC--CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhCccccCCCCCCCCcchhhccCchHHHHHHH
Confidence 8898888 999999999999999999988889999999999999999 99
Q ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHhccccchhhhHHHhhhCCC----CCCHHHHHHHHHhchHHHHHHHHHH
Q 021668 138 ALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKGK----DVSLSELDFIKRLRCGKLIEASVVC 213 (309)
Q Consensus 138 ~Ll~~Af~~l~~~~~~~~~~~~~~~~~~la~~~G~~~~~~GQ~~Dl~~~~~----~~s~~~~~~i~~~KTg~Lf~~a~~~ 213 (309)
+|++.||+++++.. .+.....+++..+++++ .+||.||++|+.+..+ .+++++|..|+++|||+||++||++
T Consensus 110 ~L~~~a~~~l~~~~--~~~~~~~~~~~~~~~~~--~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ 185 (340)
T 2e8v_A 110 YMYFRAMQLVSQLT--TKEPLYHNLITIFNEEL--INLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRL 185 (340)
T ss_dssp HHHHHHHHHGGGGC--CCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CchhhHHHHHHHHHHHH--HHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999863 23445566777788887 8999999999987642 4689999999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcC--------CCCchhhhhhh------------------
Q 021668 214 GVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG--------DDEATYPKLMG------------------ 267 (309)
Q Consensus 214 Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G--------~gK~T~p~l~g------------------ 267 (309)
|++++|+++ .++.+++||+++|+||||+||++|++++++.+| +||.|+|++++
T Consensus 186 ga~lag~~~-~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tlp~i~al~~~~~~~~~~~~~~l~~ 264 (340)
T 2e8v_A 186 MEALSPSSH-HGHSLVPFINLLGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKLSFPIVHALNFTKTKGQTEQHNEILR 264 (340)
T ss_dssp HHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHC-----CCCTTHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCCcH-HHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhCcccccchhHHHHHH
Confidence 999999987 688999999999999999999999999988777 79999998653
Q ss_pred -------------------------HHHHHHHHHHHHHHHHHH-----hccCC-CC-----CHHHHHHHHHHHHh
Q 021668 268 -------------------------VAGAKRYAKELVAEANQE-----LAYFD-PT-----RAAPLYHLADFLVS 306 (309)
Q Consensus 268 -------------------------le~A~~~a~~~~~~A~~~-----L~~l~-~~-----~~~~L~~l~~~l~~ 306 (309)
++++++.+++|.++|++. |+.+| ++ .++.|..|++++.+
T Consensus 265 ~l~~~~~~~~~~~~~~~~l~~~~ga~~~~~~~~~~~~~~A~~~~~~~~L~~lp~~~~~~~~~~~~L~~l~~~l~~ 339 (340)
T 2e8v_A 265 ILLLRTSDKDIKLKLIQILEFDTNSLAYTKNFINQLVNMIKNDNENKYLPDLASHSDTATNLHDELLYIIDHLSE 339 (340)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTC--------------------------------
T ss_pred HHhCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCcccHhhCCCCccccHHHHHHHHHHHHHHHh
Confidence 345567777777778777 77774 33 56778888887764
No 37
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=100.00 E-value=7e-42 Score=317.85 Aligned_cols=215 Identities=26% Similarity=0.413 Sum_probs=189.3
Q ss_pred HHHHHHHHHHHHHHHhccCCcc----c-c---cccccCCCCCCcchHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHhhH
Q 021668 64 DEYMTLKAKKINKALFEGAAVP----L-I---LQYPTLPNHEGERVHGTLCIASCELVGGNESSVMPLACAAEMLVTLAL 135 (309)
Q Consensus 64 ~~~l~~~~~~i~~~l~~~~~~~----~-~---~~y~l~~~~gGKrlRP~L~ll~~~~~g~~~~~~~~~AaaiEliH~aSL 135 (309)
.+|+++....||+.|.+ .++ . . ++|.+.. ||||+||.||+++++++|++.+.++++|++|||||+|||
T Consensus 2 ~~~~~~~~~~ie~~L~~--~l~~~~p~~l~~~~~y~~~~--gGKrlRP~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSL 77 (274)
T 3kra_B 2 QPYWAAIEADIERYLKK--SITIRPPETVFGPMHHLTFA--APATAASTLCLAACELVGGDRSQAMAAAAAIHLVHAAAY 77 (274)
T ss_dssp CHHHHHHHHHHHHHHHH--HCCCCSSHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH--HcccCCcHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 36888889999999998 443 2 1 8999988 999999999999999999999999999999999999999
Q ss_pred -------------------------------HHHHHHHHHHHHHhccCC---CChHHHHHHHHHHHHHhccccchhhhHH
Q 021668 136 -------------------------------NRALLCYAVEHMATKTKN---VSPDRLVRAIGEISSAVGTRGVLAGRIM 181 (309)
Q Consensus 136 -------------------------------GD~Ll~~Af~~l~~~~~~---~~~~~~~~~~~~la~~~G~~~~~~GQ~~ 181 (309)
||+|++.||+++++.... .++.++++++.++++++|..+|+.||.+
T Consensus 78 IHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~~l~~a~G~~~~~~GQ~l 157 (274)
T 3kra_B 78 VHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPEGMISGLHR 157 (274)
T ss_dssp HHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCTTHHHHHHHHHHHHHHHTSTTTHHHHHHH
T ss_pred HHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHhHHHHHHhHHH
Confidence 999999999999996421 2245778899999999999999999999
Q ss_pred HhhhCCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcCCCCch
Q 021668 182 EINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGDDEAT 261 (309)
Q Consensus 182 Dl~~~~~~~s~~~~~~i~~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G~gK~T 261 (309)
|+.+.++.++.++|.+|+++|||+||++||++||+++|++++.++.+++||+++|++|||+||.+-
T Consensus 158 Dl~~~~~~~t~~~y~~~i~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lG~aFQI~DD~~~-------------- 223 (274)
T 3kra_B 158 EEEIVDGNTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMKNS-------------- 223 (274)
T ss_dssp HTTCCTTSSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHTTT--------------
T ss_pred HHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhhcc--------------
Confidence 999987678999999999999999999999999999999999999999999999999999999811
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHH
Q 021668 262 YPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHLA 301 (309)
Q Consensus 262 ~p~l~gle~A~~~a~~~~~~A~~~L~~l~~~~~~~L~~l~ 301 (309)
+.+++++.+++|.++|++.|+.|+.+...+|.+|+
T Consensus 224 -----~~~~~~~~~~~~~~~A~~~L~~~~~~~~~pl~~~~ 258 (274)
T 3kra_B 224 -----HQLIDENIIGKLKELALEELGGFHGKNAELMSSLV 258 (274)
T ss_dssp -----SCCCCHHHHHHHHHHHHHHHTTSCSSHHHHTGGGG
T ss_pred -----ccHHHHHHHHHHHHHHHHHHHcCCchhhhhHHHHH
Confidence 22456788999999999999999876666776654
No 38
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=2.1e-41 Score=328.87 Aligned_cols=240 Identities=18% Similarity=0.186 Sum_probs=189.3
Q ss_pred hhHHHHHHHHHHHHHHHHhccCCcc--------c----ccccccCCCCCCcchHHHHHHHHHHHhCCC------chhhhh
Q 021668 61 IQIDEYMTLKAKKINKALFEGAAVP--------L----ILQYPTLPNHEGERVHGTLCIASCELVGGN------ESSVMP 122 (309)
Q Consensus 61 ~~~~~~l~~~~~~i~~~l~~~~~~~--------~----~~~y~l~~~~gGKrlRP~L~ll~~~~~g~~------~~~~~~ 122 (309)
-+|..++.+....+.+.+... .+| . .++|.+ . ||||+||+||+++++++|++ .+.+.+
T Consensus 34 ~~f~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~Y~~-~--GGKrlRp~Lvl~~~~~~g~~~~~~~~~~~a~~ 109 (395)
T 2ihi_A 34 AFFRNMYDKYRDAFLSHLNEY-SLEEEIKEHISKYYKLLFDYNC-L--GGKNNRGILVILIYEYVKNRDINSSEWEKAAC 109 (395)
T ss_dssp -CTTTTHHHHHHHHHHHHHTS-SCCHHHHHHHHHHHHHHHHHHH-S--SSCCHHHHHHHHHHHHHC---CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhC-CCChhhhhhHHHHHHHHHHhhc-c--CcccHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence 345566666666666666651 122 1 188887 7 99999999999999999875 256789
Q ss_pred HHHHHHHHHHhhH--------------------------------HHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHh
Q 021668 123 LACAAEMLVTLAL--------------------------------NRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAV 170 (309)
Q Consensus 123 ~AaaiEliH~aSL--------------------------------GD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~la~~~ 170 (309)
+|++|||||+||| ||+|++.+|+++++...+ .....+++..+++++
T Consensus 110 lA~aiEliH~asLIHDDImD~s~~RRG~pt~h~~~g~~~~~AI~~gd~L~~~a~~ll~~~~~~--~~~~~~~~~~~~~~~ 187 (395)
T 2ihi_A 110 LAWCIEILQAAFLVADDIMDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRN--ESCYVDVIATFRDAT 187 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTT--STTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCCCCCCCCccccCCccHHHHHHHHHHHHHHHHHHHHHhccC--chhHHHHHHHHHHHH
Confidence 9999999999999 899999999999985221 123345566667777
Q ss_pred ccccchhhhHHHh-hh--------------------CCC----CCCHHHHHHHHHhchHHH-HHHHHHHHHHhcCCCHHH
Q 021668 171 GTRGVLAGRIMEI-NS--------------------KGK----DVSLSELDFIKRLRCGKL-IEASVVCGVLIGGGSEED 224 (309)
Q Consensus 171 G~~~~~~GQ~~Dl-~~--------------------~~~----~~s~~~~~~i~~~KTg~L-f~~a~~~Gailag~~~~~ 224 (309)
.++|.||.+|+ .| ++. ++++++|..|+.+|||+| |.+||++|++++|++++.
T Consensus 188 --~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~~e~~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~lag~~~~~ 265 (395)
T 2ihi_A 188 --LKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDN 265 (395)
T ss_dssp --HHHHHHHHHHHHTTSHHHHCSSSCCCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCTTC
T ss_pred --HHHHHhHHHHHHhhhhcccccccccccccccccccccccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhh
Confidence 78999999999 22 222 478999999999999999 999999999999999887
Q ss_pred --HHHHHHHHHHHHHHHHHHhchhhhcccchhcC-------CCCchhhhhh-----------------------------
Q 021668 225 --IEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG-------DDEATYPKLM----------------------------- 266 (309)
Q Consensus 225 --~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G-------~gK~T~p~l~----------------------------- 266 (309)
++.+++||.++|+||||+||+||++++++.+| +||.|||+++
T Consensus 266 ~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK~g~Dl~egK~T~p~l~al~~~~~~~~~~L~~~~~~~~~~~~~~v~ 345 (395)
T 2ihi_A 266 LIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVID 345 (395)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHSCC---------CTTTTTCCCHHHHHHHHHCCHHHHHHHHHHCC-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHhCCCcchhhcCCchHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHH
Confidence 89999999999999999999999999987766 8999999875
Q ss_pred -------hHHHHHHHHHHHHHHHHHHhccCCC-CCHHHHHHHHHHHHhcc
Q 021668 267 -------GVAGAKRYAKELVAEANQELAYFDP-TRAAPLYHLADFLVSRH 308 (309)
Q Consensus 267 -------gle~A~~~a~~~~~~A~~~L~~l~~-~~~~~L~~l~~~l~~R~ 308 (309)
+++++++.++++.++|++.|+.+|. +.++.|..|++++.+|.
T Consensus 346 ~l~~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~r~~L~~l~~~i~~R~ 395 (395)
T 2ihi_A 346 SLYEQYKIRKHYESYEKAQKAKILSAINELHHEGIEYVLKYLLEILFTGV 395 (395)
T ss_dssp HC----CHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHC-----
T ss_pred HHHHHCChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhccC
Confidence 4678889999999999999999965 67889999999999883
No 39
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=100.00 E-value=3.8e-41 Score=326.83 Aligned_cols=215 Identities=16% Similarity=0.193 Sum_probs=181.7
Q ss_pred cccccCCCCCCcchHHHHHHHHHHHhCC-------------CchhhhhHHH----HHHHHHHhhH---------------
Q 021668 88 LQYPTLPNHEGERVHGTLCIASCELVGG-------------NESSVMPLAC----AAEMLVTLAL--------------- 135 (309)
Q Consensus 88 ~~y~l~~~~gGKrlRP~L~ll~~~~~g~-------------~~~~~~~~Aa----aiEliH~aSL--------------- 135 (309)
|+|.+ . ||||+||+||+++++++|+ +.+.++++|+ ||||||+|||
T Consensus 62 m~Y~~-~--GGKr~Rp~l~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~g~avEliH~asLIHDDImD~s~~RRG~ 138 (390)
T 3dyh_A 62 MDTTC-L--GGKYNRGLTVIDVAESLLSLSPNNNGEEDDGARRKRVLHDACVCGWMIEFLQAHYLVEDDIMDNSVTRRGK 138 (390)
T ss_dssp HHHHH-S--SSCCHHHHHHHHHHHHTSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEETTE
T ss_pred HHhhc-C--CccchhHHHHHHHHHHhCCccccccccccccCCHHHHHHHHHhhhhHHHHHHHHHHHHcCCcCCCCCcCCC
Confidence 89998 7 9999999999999999886 2456778887 7999999999
Q ss_pred ---------------HHHHHH--HHHHHHHhccCCCChHHHHHHHHHHHHHhccccchhhhHHHhhhC----------C-
Q 021668 136 ---------------NRALLC--YAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINSK----------G- 187 (309)
Q Consensus 136 ---------------GD~Ll~--~Af~~l~~~~~~~~~~~~~~~~~~la~~~G~~~~~~GQ~~Dl~~~----------~- 187 (309)
||+++. .+|+++++...+.+ ...+++..+++++ ..++.||++|+.+. +
T Consensus 139 Pt~h~~~G~~~ail~gD~ll~~a~a~~ll~~~~~~~~--~~~~~~~~~~~~~--~~~~~GQ~lDl~~~~e~~~~d~~~~~ 214 (390)
T 3dyh_A 139 PCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADRP--FLQDLLCRFNRVD--YTTAVGQLYDVTSMFDSNKLDPDVSQ 214 (390)
T ss_dssp ECGGGSTTCCHHHHHHHHHHHHHHHHHHHHHHSTTCT--THHHHHHHHHHHH--HHHHHHHHHHHTTTSCGGGCCTTSCC
T ss_pred ccccccCChHHHHHHHHHHHHHHHHHHHHHHhccCch--hHHHHHHHHHHHH--HHHHHHHHHHHhhccccccccccccc
Confidence 899886 55788887422211 2234455556666 78999999999872 1
Q ss_pred ------CCCCHHHHHHHHHhchHHH-HHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHhchhhhcccchhcC---
Q 021668 188 ------KDVSLSELDFIKRLRCGKL-IEASVVCGVLIGGGSEED-IEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG--- 256 (309)
Q Consensus 188 ------~~~s~~~~~~i~~~KTg~L-f~~a~~~Gailag~~~~~-~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G--- 256 (309)
.++++++|..|+++|||+| |++||++|++++|++++. ++.+++||.++|+||||+||+||+++|++.+|
T Consensus 215 ~~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~g 294 (390)
T 3dyh_A 215 PTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMDCFTPPERLGKVG 294 (390)
T ss_dssp CCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCC
T ss_pred ccccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHhCCCc
Confidence 2478999999999999999 999999999999998775 78999999999999999999999999988776
Q ss_pred ----CCCchhhhhh------------------------------------hHHHHHHHHHHHHHHHHHHhccCCCCC---
Q 021668 257 ----DDEATYPKLM------------------------------------GVAGAKRYAKELVAEANQELAYFDPTR--- 293 (309)
Q Consensus 257 ----~gK~T~p~l~------------------------------------gle~A~~~a~~~~~~A~~~L~~l~~~~--- 293 (309)
+||.|||+++ +++++++.++++.++|++.|+.+|...
T Consensus 295 ~Dl~egK~T~pvi~al~~~~~~~r~~L~~~~~~~~~~~v~~v~~l~~~~g~~~~~~~~~~~~~~~a~~~i~~l~~~~~~~ 374 (390)
T 3dyh_A 295 TDIQDAKCSWLAVTFLAKASSAQVAEFKANYGSGDSEKVATVRRLYEEADLQGDYVAYEAAVAEQVKELIEKLRLCSPGF 374 (390)
T ss_dssp CTTTTTCCCHHHHHHHHHCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred chhhcCCccHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHcCCCCchHH
Confidence 8999999875 567888999999999999999995433
Q ss_pred HHHHHHHHHHHHhccC
Q 021668 294 AAPLYHLADFLVSRHK 309 (309)
Q Consensus 294 ~~~L~~l~~~l~~R~~ 309 (309)
++.|..|++++.+|+|
T Consensus 375 ~~~l~~l~~~i~~R~k 390 (390)
T 3dyh_A 375 AASVETLWGKTYKRQK 390 (390)
T ss_dssp HHHHHHHHHTTTTCCC
T ss_pred HHHHHHHHHHHHcCCC
Confidence 6899999999999986
No 40
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=100.00 E-value=3.6e-41 Score=316.89 Aligned_cols=205 Identities=19% Similarity=0.196 Sum_probs=175.5
Q ss_pred cccccCCCCCCcchHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHhhH------------------------------HH
Q 021668 88 LQYPTLPNHEGERVHGTLCIASCELVGGNESSVMPLACAAEMLVTLAL------------------------------NR 137 (309)
Q Consensus 88 ~~y~l~~~~gGKrlRP~L~ll~~~~~g~~~~~~~~~AaaiEliH~aSL------------------------------GD 137 (309)
++|.+.. ||||+||.|++++++++|++.+.++++|+++||||++|| ||
T Consensus 17 ~~y~~~~--gGKr~Rp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD 94 (301)
T 2q80_A 17 YKYLLQL--PGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSAN 94 (301)
T ss_dssp HHHHTTS--SCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEETTEECHHHHHCHHHHHHHHH
T ss_pred HHHHHhC--CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCCcchhhccCcHHHHHHHH
Confidence 7788877 999999999999999999988889999999999999999 99
Q ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHhccccchhhhHHHhhhCCC--CCCHHHHHHHHHhchHHHHHHHHHHHH
Q 021668 138 ALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKGK--DVSLSELDFIKRLRCGKLIEASVVCGV 215 (309)
Q Consensus 138 ~Ll~~Af~~l~~~~~~~~~~~~~~~~~~la~~~G~~~~~~GQ~~Dl~~~~~--~~s~~~~~~i~~~KTg~Lf~~a~~~Ga 215 (309)
+|++.||+++++.. + ...++ .+++++ ..||.||.+|+.+..+ ++++++|..|+++|||+||++||++|+
T Consensus 95 ~l~~~a~~~l~~~~-~---~~~~~---~~~~~~--~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga 165 (301)
T 2q80_A 95 YVYFLGLEKVLTLD-H---PDAVK---LFTRQL--LELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQ 165 (301)
T ss_dssp HHHHHHHHHHHTTC-C---TTHHH---HHHHHH--HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC-C---HHHHH---HHHHHH--HHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHH
Confidence 99999999999863 1 12333 345666 7899999999988543 578999999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcC--------CCCchhhhhhh--------------------
Q 021668 216 LIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG--------DDEATYPKLMG-------------------- 267 (309)
Q Consensus 216 ilag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G--------~gK~T~p~l~g-------------------- 267 (309)
+++|.++ .+.+||.++|+||||+||++|++++++.+| +||.|||++++
T Consensus 166 ~~a~~~~----~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~l~~~l~~~~~~ 241 (301)
T 2q80_A 166 LFSDYKE----DLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTEN 241 (301)
T ss_dssp HTCCCCS----CCHHHHHHHHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHHHHHHHHSTTCCHHHHHHHHTCCC
T ss_pred HHCCChH----HHHHHHHHHHHHHHHHHHHhhhcCChhhhCCCccchhhcCCcHHHHHHHHHcCccchHHHHHHhcCCCC
Confidence 9999873 589999999999999999999999988777 79999999763
Q ss_pred ----------------HHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhccC
Q 021668 268 ----------------VAGAKRYAKELVAEANQELAYFDPTRAAPLYHLADFLVSRHK 309 (309)
Q Consensus 268 ----------------le~A~~~a~~~~~~A~~~L~~l~~~~~~~L~~l~~~l~~R~~ 309 (309)
++++++.+++|.++|++.|+.+|.. ..|..+++++..|.+
T Consensus 242 ~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~A~~~L~~l~~~--~~L~~l~~~l~~~~~ 297 (301)
T 2q80_A 242 IDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGN--PELVALVKHLSKMFK 297 (301)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhc
Confidence 4578899999999999999999642 349999999988753
No 41
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=1.4e-40 Score=323.64 Aligned_cols=240 Identities=18% Similarity=0.193 Sum_probs=185.6
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhccCCccc--------c----cccccCCCCCCcchHHHHHHHHHHHhCCC------ch
Q 021668 57 PFPEIQIDEYMTLKAKKINKALFEGAAVPL--------I----LQYPTLPNHEGERVHGTLCIASCELVGGN------ES 118 (309)
Q Consensus 57 ~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~--------~----~~y~l~~~~gGKrlRP~L~ll~~~~~g~~------~~ 118 (309)
.....+|+..+.+++..+.+.|.+. .++. + ++|.+ . ||||+||+||+++++++|+. .+
T Consensus 30 ~~~~~~f~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~Y~~-~--GGKRlRP~l~l~~~~~~~~~~~~~~~~~ 105 (395)
T 3mav_A 30 DSGLAFFRNMYDKYRDAFLSHLNEY-SLEEEIKEHISKYYKLLFDYNC-L--GGKNNRGILVILIYEYVKNRDINSSEWE 105 (395)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHTS-SCCHHHHHHHHHHHHHHHHHHH-S--SSCCHHHHHHHHHHHHHHC-CCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHhcCC-C--CchhhhHHHHHHHHHHhCCCCCCcccHH
Confidence 4455578888999999999998872 1211 1 56776 5 99999999999999999763 25
Q ss_pred hhhhHHHHHHHHHHhhH------------------------------HHHHH--HHHHHHHHhccCCCChHHHHHHHHHH
Q 021668 119 SVMPLACAAEMLVTLAL------------------------------NRALL--CYAVEHMATKTKNVSPDRLVRAIGEI 166 (309)
Q Consensus 119 ~~~~~AaaiEliH~aSL------------------------------GD~Ll--~~Af~~l~~~~~~~~~~~~~~~~~~l 166 (309)
.++++|+||||||+||| ||+|+ +.+|.++..... +.....+++..+
T Consensus 106 ~~~~~A~aiEliH~asLiHDDImD~s~~RRG~pt~h~~~g~~~Ail~GD~ll~~~~~~~ll~~~~~--~~~~~~~~~~~~ 183 (395)
T 3mav_A 106 KAACLAWCIEILQAAFLVADDIMDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLR--NESCYVDVIATF 183 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHT--TSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhcCCCCCCCchhhhhccchHHHHHhhhHHHHHHHHHHHHHHhcc--ChhHHHHHHHHH
Confidence 68899999999999999 99876 567888876532 223445667777
Q ss_pred HHHhccccchhhhHHHhhhCCC-------------------------CCCHHHHHHHHHhchHHH-HHHHHHHHHHhcCC
Q 021668 167 SSAVGTRGVLAGRIMEINSKGK-------------------------DVSLSELDFIKRLRCGKL-IEASVVCGVLIGGG 220 (309)
Q Consensus 167 a~~~G~~~~~~GQ~~Dl~~~~~-------------------------~~s~~~~~~i~~~KTg~L-f~~a~~~Gailag~ 220 (309)
++++ ..||+||.+|+.+... .+++++|..|+.+|||+| |.+||.+|++++|+
T Consensus 184 ~~~~--~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ag~ 261 (395)
T 3mav_A 184 RDAT--LKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGI 261 (395)
T ss_dssp HHHH--HHHHHHHHHHHHTTSHHHHCC-CCCCSSCSSSCCCCCCCGGGCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTC
T ss_pred HHHH--HHHHHHHHHHHHHHhccchhHHHHhhhcccccchhcccccccCCHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC
Confidence 8887 8899999999976431 257899999999999999 99999999999987
Q ss_pred C--HHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcC-------CCCchhhhhhh------------------------
Q 021668 221 S--EEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG-------DDEATYPKLMG------------------------ 267 (309)
Q Consensus 221 ~--~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G-------~gK~T~p~l~g------------------------ 267 (309)
+ +..++.+++||.++|+||||+||+||+++|++.+| +||.|||++++
T Consensus 262 ~~d~~~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK~g~Dl~egK~T~p~i~al~~~~~~~r~~L~~~~~~~d~~~~ 341 (395)
T 3mav_A 262 AVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACV 341 (395)
T ss_dssp CTTCTHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCTTTTTCCCHHHHHHHHHSCHHHHHHHHHHTTCSCHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHhhhcccccHHhcCCchHHHHHHHHhCCHHHHHHHHHHhCCCCHHHH
Confidence 5 44678999999999999999999999999998877 89999999763
Q ss_pred ------------HHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhc
Q 021668 268 ------------VAGAKRYAKELVAEANQELAYFDPTRAAPLYHLADFLVSR 307 (309)
Q Consensus 268 ------------le~A~~~a~~~~~~A~~~L~~l~~~~~~~L~~l~~~l~~R 307 (309)
.+++++.++++.++|.+.|+.++. +.++.+.+++++|
T Consensus 342 ~~v~~l~~~~g~~~~~~~~~~~~~~~a~~~l~~l~~---~~l~~ll~~lle~ 390 (395)
T 3mav_A 342 KVIDSLYEQYKIRKHYESYEKAQKAKILSAINELHH---EGIEYVLKYLLEI 390 (395)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSCC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHH
Confidence 456778899999999999999864 4455666666654
No 42
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=100.00 E-value=2e-40 Score=307.88 Aligned_cols=218 Identities=26% Similarity=0.442 Sum_probs=190.0
Q ss_pred hHHHHHHHHHHHHHHHHhccCC--cccc----cccccCCCCCCcchHHHHHHHHHHHhCCCchhhhhHHHHHHHHHHhhH
Q 021668 62 QIDEYMTLKAKKINKALFEGAA--VPLI----LQYPTLPNHEGERVHGTLCIASCELVGGNESSVMPLACAAEMLVTLAL 135 (309)
Q Consensus 62 ~~~~~l~~~~~~i~~~l~~~~~--~~~~----~~y~l~~~~gGKrlRP~L~ll~~~~~g~~~~~~~~~AaaiEliH~aSL 135 (309)
.+.+|++.....||+.|.+.+. .|.. ++|.+.. ||||+||.||+++++++|++.+.++++|++|||||+|||
T Consensus 5 ~~~~~~~~~~~~i~~~L~~~~~~~~p~~l~~~~~y~~~~--gGKrlRP~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSL 82 (273)
T 3qkc_B 5 RTQTYRATIESDIESYLKKAIPIRAPESVFEPMHHLTFA--APRTSASALCVAACELVGGDRSDAMAAAAAVHLMHVAAY 82 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCCSSTTHHHHHHHHHH--SCCCHHHHHHHHHHHHTTCCGGGTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999998321 1221 8999988 999999999999999999999999999999999999999
Q ss_pred -----------------------------HHHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHHhccccchhhhHHHhh
Q 021668 136 -----------------------------NRALLCYAVEHMATKTK--NVSPDRLVRAIGEISSAVGTRGVLAGRIMEIN 184 (309)
Q Consensus 136 -----------------------------GD~Ll~~Af~~l~~~~~--~~~~~~~~~~~~~la~~~G~~~~~~GQ~~Dl~ 184 (309)
||+|++.||+++++... ..++.++++++.++++++|..+|+.||.+|+.
T Consensus 83 IHDDI~D~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~ 162 (273)
T 3qkc_B 83 THENLPLTDGPMSKSEIQHKFDPNIELLTGDGIIPFGLELMARSMDPTRNNPDRILRAIIELTRVMGSEGIVEGQYHELG 162 (273)
T ss_dssp HHHSCCBTTBCSSSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHHHHHTTTTHHHHHHHHTT
T ss_pred HHcCcccCccCCCCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHhchhHHHHHHHHHHh
Confidence 99999999999998642 12356788999999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcCCCCchhhh
Q 021668 185 SKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGDDEATYPK 264 (309)
Q Consensus 185 ~~~~~~s~~~~~~i~~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G~gK~T~p~ 264 (309)
+. ...+.+++..|+++|||+||++||++||+++|++++.++.+++||+++|++|||+||+++- +
T Consensus 163 ~~-~~~~~eyl~~I~~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lGlaFQI~DD~~~~----------~----- 226 (273)
T 3qkc_B 163 LN-QLNDLELIEYVCKKKEGTLHACGAACGAILGGCDEDKIEKLRRFGLYVGTVQGLLGKNRSG----------F----- 226 (273)
T ss_dssp CC-SSCCHHHHHHHHHHTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTTCCST----------T-----
T ss_pred cC-CCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhc----------h-----
Confidence 84 3567777778889999999999999999999999999999999999999999999999741 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH
Q 021668 265 LMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHLADFL 304 (309)
Q Consensus 265 l~gle~A~~~a~~~~~~A~~~L~~l~~~~~~~L~~l~~~l 304 (309)
.+.++++.++|++.|+.|+.+....|.++++|-
T Consensus 227 -------~~~~~~~~~~a~~~l~~~~~~~~~~l~~~~~~~ 259 (273)
T 3qkc_B 227 -------EGRIKELKELAVKELESFGGEKIELIRGVFELE 259 (273)
T ss_dssp -------HHHHHHHHHHHHHHHTTCCSSHHHHHHHHTTC-
T ss_pred -------HHHHHHHHHHHHHHHHccCchhhhHHHHHHHHH
Confidence 277899999999999999776778898888764
No 43
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=100.00 E-value=8e-40 Score=315.51 Aligned_cols=241 Identities=11% Similarity=0.131 Sum_probs=188.0
Q ss_pred hHHHHHHHHHHHHHHHHhccC---Cccc--------ccccccCCCCCCcchHHHHHHHHHHHhCCC----chhhhhHHHH
Q 021668 62 QIDEYMTLKAKKINKALFEGA---AVPL--------ILQYPTLPNHEGERVHGTLCIASCELVGGN----ESSVMPLACA 126 (309)
Q Consensus 62 ~~~~~l~~~~~~i~~~l~~~~---~~~~--------~~~y~l~~~~gGKrlRP~L~ll~~~~~g~~----~~~~~~~Aaa 126 (309)
+|..|+.+....|++.+++.. .++. .++|.+ . ||||+||+|++++++++|+. .+.++++|+|
T Consensus 27 df~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~Y~~-~--GGKrlRp~l~~~~~~~~~~~~~~~~e~~~~la~a 103 (368)
T 2q58_A 27 DFINYYDKFKVIVYNVLKKLPLNDEIRKPVIEYYLNCIDYNV-K--KGKHIRGKILVLISSLSSAYSNIKRDSIYLLGWV 103 (368)
T ss_dssp TGGGTHHHHHHHHHTTCCCCCSSCSTTCCHHHHHHHHHHHHT-T--CSTTTTTC-CHHHHTTTTCCCSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHhcCC-C--CccchhHHHHHHHHHHhCCCccCCHHHHHHHHHH
Confidence 455566666666666665521 0110 178887 6 99999999999999999863 4678899999
Q ss_pred HHHHHHhhH------------------------------HHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHhccccch
Q 021668 127 AEMLVTLAL------------------------------NRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVL 176 (309)
Q Consensus 127 iEliH~aSL------------------------------GD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~la~~~G~~~~~ 176 (309)
|||||+||| ||+|++.||+++.+.....+.+...+++..+++++ ..++
T Consensus 104 iEliH~asLiHDDimD~s~~RRG~pt~h~~~G~~~AIl~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 181 (368)
T 2q58_A 104 VEAIQALILIADDIMDSGKFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESI--FFTV 181 (368)
T ss_dssp HHHHHHHHHHHHHHHTTCCEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHHHHHhhcccCCCCCCCCCccccCcchhhHHHHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHH--HHhh
Confidence 999999999 99999999999987543334456677888888888 7899
Q ss_pred hhhHHHhhhCCC---CCCHHHHHHHHHhchHHH-HHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHhchhhhcc
Q 021668 177 AGRIMEINSKGK---DVSLSELDFIKRLRCGKL-IEASVVCGVLIGG--GSEEDIEKLRKYGKCVGLAYQVWDDILDNMK 250 (309)
Q Consensus 177 ~GQ~~Dl~~~~~---~~s~~~~~~i~~~KTg~L-f~~a~~~Gailag--~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~ 250 (309)
.||.+|+.+... +.+.++|..|+.+|||.| |.+||.+|++++| ++++.++.+++||.++|+||||+||+||+++
T Consensus 182 ~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~ 261 (368)
T 2q58_A 182 LGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYLF 261 (368)
T ss_dssp HHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHhhhcccCCchHHHHHHHHHHHhccccchHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999987643 467889999999999998 7999999999998 5667788999999999999999999999987
Q ss_pred cchhcC----CCCchhhhhhhH--------------------------------HHHHHHHHHHHHHHHHHhccCCCC-C
Q 021668 251 KKKEAG----DDEATYPKLMGV--------------------------------AGAKRYAKELVAEANQELAYFDPT-R 293 (309)
Q Consensus 251 ~~~~~G----~gK~T~p~l~gl--------------------------------e~A~~~a~~~~~~A~~~L~~l~~~-~ 293 (309)
+. ..| +||.|||+++++ +.+.+.++++++++.+.++.++.. .
T Consensus 262 gK-~~g~Dl~egK~T~p~i~al~~~~~~~r~~L~~~~~~~~~~vk~l~~~l~~~~~~~ey~~~~~~~~~~~i~~l~~~~~ 340 (368)
T 2q58_A 262 ND-SNADDICRFKLTWPLQKSFEIADEEMKLKISENYGKNSSLVKDCYNLLKINEHYLEYQRNALDYLIKLVKDITDDSL 340 (368)
T ss_dssp CC-CSSCTTTSCCCCHHHHSSTTTCCHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred CC-CCCchHhcCCcHHHHHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccchhH
Confidence 54 345 899999998632 234566777888888888888542 2
Q ss_pred ----HHHHHHHHHHHHhcc
Q 021668 294 ----AAPLYHLADFLVSRH 308 (309)
Q Consensus 294 ----~~~L~~l~~~l~~R~ 308 (309)
...|.+|++|+..|+
T Consensus 341 k~~l~~ll~kI~~~~~~rk 359 (368)
T 2q58_A 341 QKVFIHLIHQISELITNSR 359 (368)
T ss_dssp HHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 246777888887775
No 44
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=100.00 E-value=3.3e-39 Score=310.58 Aligned_cols=211 Identities=12% Similarity=0.128 Sum_probs=180.5
Q ss_pred cccccCCCCCCcchHHHHHHHHHHHhCCC----chhhhhHHHHHHHHHHhhH----------------------------
Q 021668 88 LQYPTLPNHEGERVHGTLCIASCELVGGN----ESSVMPLACAAEMLVTLAL---------------------------- 135 (309)
Q Consensus 88 ~~y~l~~~~gGKrlRP~L~ll~~~~~g~~----~~~~~~~AaaiEliH~aSL---------------------------- 135 (309)
++|.+ . ||||+||+||+++++++|+. .+.++++|++|||||++||
T Consensus 64 ~~y~~-~--GGKrlRp~l~l~~~~~~g~~~~~~~~~~~~~A~avEllH~asLIHDDImD~s~~RRG~pt~h~~~G~~~AI 140 (368)
T 2her_A 64 IDYNV-K--KGKHIRGKILVLISSLSSAYSNIKRDSIYLLGWVVEAIQALILIADDIMDSGKFRRGAPCWYIVHGQSNAI 140 (368)
T ss_dssp HHHHT-T--SSTTTTTC-CHHHHTTTTCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEETTEECHHHHTHHHHHH
T ss_pred HHHhh-C--CCCccchHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCCCccHHhcCChHHHH
Confidence 66776 7 99999999999999999863 4678999999999999999
Q ss_pred --HHHHH---HHHHHHHHhccCCCChHHHHHHHHHHHHHhccccchhhhHHHhhhCCC--CCCH-HHHHHHHHhchHHH-
Q 021668 136 --NRALL---CYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIMEINSKGK--DVSL-SELDFIKRLRCGKL- 206 (309)
Q Consensus 136 --GD~Ll---~~Af~~l~~~~~~~~~~~~~~~~~~la~~~G~~~~~~GQ~~Dl~~~~~--~~s~-~~~~~i~~~KTg~L- 206 (309)
||+|+ +.+|+++++.. ......+++..+++++ .+||.||.+|+.+... ..+. ++|..|+++|||+|
T Consensus 141 l~GD~L~~~a~~a~~ll~~~~---~~~~~~~~~~~~~~~~--~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Ls 215 (368)
T 2her_A 141 NDIFFLKMLSLSLIFELSSVF---GNDIVMKIQKIYNESI--FFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYT 215 (368)
T ss_dssp HHHHHHHHHHHHHHTTTHHHH---CHHHHHHHHHHHHHHH--HHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc---CcChHHHHHHHHHHHH--HHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHH
Confidence 99999 89999998742 1112556777788888 8999999999988752 3444 89999999999999
Q ss_pred HHHHHHHHHHhcCCCHHH--HHHHHHHHHHHHHHHHHHhchhhhcccchhcC----CCCchhhhhh--------------
Q 021668 207 IEASVVCGVLIGGGSEED--IEKLRKYGKCVGLAYQVWDDILDNMKKKKEAG----DDEATYPKLM-------------- 266 (309)
Q Consensus 207 f~~a~~~Gailag~~~~~--~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G----~gK~T~p~l~-------------- 266 (309)
|++||++|++++|++++. ++.+++||.++|+||||+||+||++ ...+.| +||.|||+++
T Consensus 216 f~~~~~lGa~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~-~~GK~g~Dl~egK~T~pvi~al~~a~~~~r~~L~ 294 (368)
T 2her_A 216 FYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYL-FNDSNADDICRFKLTWPLQKSFEIADEEMKLKIS 294 (368)
T ss_dssp THHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHH-SCCSSSCTTTTTCCCHHHHSSTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCChHhCCcccHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999887 8999999999999999999999998 222255 8999999874
Q ss_pred ------------------hHHHHHHHHHHHHHHHHHHhccCCC-CCHHHHHHHHHHHHhc
Q 021668 267 ------------------GVAGAKRYAKELVAEANQELAYFDP-TRAAPLYHLADFLVSR 307 (309)
Q Consensus 267 ------------------gle~A~~~a~~~~~~A~~~L~~l~~-~~~~~L~~l~~~l~~R 307 (309)
+++++++.+++|.++|++.|+.+|. +.++.|..|++++.+|
T Consensus 295 ~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~~l~~~i~~~ 354 (368)
T 2her_A 295 ENYGKNSSLVKDCYNLLKINEHYLEYQRNALDYLIKLVKDITDDSLQKVFIHLIHQISEL 354 (368)
T ss_dssp HHTTTCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999965 5778999999999876
No 45
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=100.00 E-value=9.3e-38 Score=290.96 Aligned_cols=206 Identities=17% Similarity=0.240 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHHHHHhccCCcc----cc----cccccCCCCCCcchHHHHHHHHHHHhCC---CchhhhhHHHHHHHHH
Q 021668 63 IDEYMTLKAKKINKALFEGAAVP----LI----LQYPTLPNHEGERVHGTLCIASCELVGG---NESSVMPLACAAEMLV 131 (309)
Q Consensus 63 ~~~~l~~~~~~i~~~l~~~~~~~----~~----~~y~l~~~~gGKrlRP~L~ll~~~~~g~---~~~~~~~~AaaiEliH 131 (309)
+...++.....|++.|.+ .++ .. ++|.+.. ||||+||.|++++++++|+ +.+.++++|+++||||
T Consensus 6 l~~~i~~~l~~ve~~L~~--~l~~~~~~~l~~~~~y~~~~--gGKrlRp~Lvll~~~~~g~~~~~~~~~~~~A~aiEliH 81 (285)
T 4fp4_A 6 LPPEVLAALERVKARLNK--VGEELEPISLRKAVRHYIET--PGKLLRPLLLLTFTYSIDRRSIMDPRILEAAAIVELLH 81 (285)
T ss_dssp CCHHHHHHHHHHHHHHHT--TTTTCSSHHHHHHHHHHHHS--CCCCHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HhhhcCcHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHH
Confidence 345677788889999888 442 11 8899888 9999999999999999998 7888999999999999
Q ss_pred HhhH------------------------------HHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHhccccchhhhHH
Q 021668 132 TLAL------------------------------NRALLCYAVEHMATKTKNVSPDRLVRAIGEISSAVGTRGVLAGRIM 181 (309)
Q Consensus 132 ~aSL------------------------------GD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~la~~~G~~~~~~GQ~~ 181 (309)
+||| ||+|++.||+++++.. + +++..+++++ .+||.||.+
T Consensus 82 ~aSLIHDDImD~s~~RRG~Pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~----~----~~~~~ls~~~--~~~~~GQ~l 151 (285)
T 4fp4_A 82 VVSLLQDDVMDQHDQRRGIKTPRAMYGDGRAIVASDWLIAESIKMAVNLG----A----DVVTYLADVA--QRLSVGQAL 151 (285)
T ss_dssp HHHHHHHHHHTTCSBSSSSBCHHHHHCHHHHHHHHHHHHHHHHHHHHTTC----H----HHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCCCCcHHHhcChHHHHHHHHHHHHHHHHHHHHhh----H----HHHHHHHHHH--HHHHHhHHH
Confidence 9999 9999999999999852 2 4566677787 789999999
Q ss_pred HhhhCCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcCCCCch
Q 021668 182 EINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGDDEAT 261 (309)
Q Consensus 182 Dl~~~~~~~s~~~~~~i~~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G~gK~T 261 (309)
|+.+..+ . |+++|||+||++||++|++++|++ +.++.+++||+++|+||||+||++|++++++..|
T Consensus 152 Dl~~~~~-----~---~i~~KTg~Lf~~a~~lGa~lag~~-~~~~~l~~~G~~lGlAFQI~DDiLD~~~d~~~~k----- 217 (285)
T 4fp4_A 152 DLEGERD-----K---AAEFKTAPLIEAALVMPLVILGRR-ELIETAKKLGTKLGILYQYSDDYSDENVERPETK----- 217 (285)
T ss_dssp HHTTCHH-----H---HHHHHTHHHHHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHTTCC---------CHHHH-----
T ss_pred HHhcccc-----c---hhhcCcHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCccccC-----
Confidence 9988741 1 889999999999999999999999 8889999999999999999999999999765322
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhcc
Q 021668 262 YPKLMGVAGAKRYAKELVAEANQELAYFDPTRAAPLYHLADFLVSRH 308 (309)
Q Consensus 262 ~p~l~gle~A~~~a~~~~~~A~~~L~~l~~~~~~~L~~l~~~l~~R~ 308 (309)
....++.+ .+..+..+..+...+++.+++|+++|.
T Consensus 218 -----------~~g~DI~e-~l~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (285)
T 4fp4_A 218 -----------SIANEIGR-YLLKIKEHVGDAIAPFERLIKYLIGKA 252 (285)
T ss_dssp -----------HHHHHHHH-HHHHHHHHHGGGGHHHHHHHHHHHHHH
T ss_pred -----------ccHHHHHH-HHHHHHHHhcchhhhHHHHHHHHHHHH
Confidence 22333222 255554443346789999999999873
No 46
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=91.90 E-value=1.9 Score=40.47 Aligned_cols=113 Identities=13% Similarity=0.025 Sum_probs=73.1
Q ss_pred ccchhhhHHHhhhCCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccc
Q 021668 173 RGVLAGRIMEINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKK 252 (309)
Q Consensus 173 ~~~~~GQ~~Dl~~~~~~~s~~~~~~i~~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~ 252 (309)
..|..|-.+|+.. .-.|.++++.-+.+=-|....+++.+-..-...++ ........+.++|.|||+.+=+.|+-.|.
T Consensus 121 ~~m~~gm~~dl~~--~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~~~-~~~~~~~~A~~lG~AlQltNilRDv~eD~ 197 (343)
T 3vj8_A 121 RRMGIGMAEFLDK--HVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDP-LVGEDTERANSMGLFLQKTNIIRDYLEDQ 197 (343)
T ss_dssp HHHHHHHHHGGGC--CCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSCH-HHHHCHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHhccC--CCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCCccc-hhhhHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3466777778752 23477777665555556666666665443322222 23456789999999999999888887776
Q ss_pred hhcCCCCchhhh----------------------hhhHHHHHHHHHHHHHHHHHHhccCCC
Q 021668 253 KEAGDDEATYPK----------------------LMGVAGAKRYAKELVAEANQELAYFDP 291 (309)
Q Consensus 253 ~~~G~gK~T~p~----------------------l~gle~A~~~a~~~~~~A~~~L~~l~~ 291 (309)
.. | ..=+|. ...+..-...+..+..+|...+..++.
T Consensus 198 ~~-g--R~YlP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~l~~~A~~~~~~a~~~~~~L~~ 255 (343)
T 3vj8_A 198 QG-G--REFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRN 255 (343)
T ss_dssp HT-T--CCCSCHHHHTTTCSSGGGGGSGGGHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCC
T ss_pred hC-C--CeeCCHHHHHHcCCCHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 53 3 333332 123455567778888888888888865
No 47
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=90.15 E-value=2.4 Score=38.50 Aligned_cols=112 Identities=9% Similarity=-0.045 Sum_probs=73.1
Q ss_pred ccchhhhHHHhhhCCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccc
Q 021668 173 RGVLAGRIMEINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKK 252 (309)
Q Consensus 173 ~~~~~GQ~~Dl~~~~~~~s~~~~~~i~~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~ 252 (309)
..|+.|..+|+.... -.|.++++.-+.+=-|.+..+++.+ ++..+. +.....+.++|.|+|+.+=+.|+-.|.
T Consensus 111 ~~li~g~~~Dl~~~~-~~t~~dL~~Yc~~vAg~VG~l~~~l---~g~~~~---~~~~~~A~~lG~AlQltNilRDv~eD~ 183 (293)
T 3acx_A 111 YNLIDTVYKDQHFTM-FETDAELFGYCYGVAGTVGEVLTPI---LSDHET---HQTYDVARRLGESLQLINILRDVGEDF 183 (293)
T ss_dssp HHHHHHHHHHTTCCC-CSSHHHHHHHHHHHTHHHHHHHHHH---HCSSCC---HHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHcCCCC-CCCHHHHHHHHHHhhHHHHHHHHHH---hCCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888876432 2467777665545455555555543 233331 246679999999999999888887765
Q ss_pred hhcCCCCchhhhh----------------------hhHHHHHHHHHHHHHHHHHHhccCCCCCH
Q 021668 253 KEAGDDEATYPKL----------------------MGVAGAKRYAKELVAEANQELAYFDPTRA 294 (309)
Q Consensus 253 ~~~G~gK~T~p~l----------------------~gle~A~~~a~~~~~~A~~~L~~l~~~~~ 294 (309)
+ .|++-+|.- ..+..-...++.+..+|...+..+|...+
T Consensus 184 ~---~gR~YLP~d~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~a~~~~~~lp~~~r 244 (293)
T 3acx_A 184 E---NERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKVFSIEAQ 244 (293)
T ss_dssp H---TTCCCSCHHHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTGGGSCTTHH
T ss_pred h---CCcEEeCHHHHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHHHH
Confidence 5 366666641 12344456788888899998888876433
No 48
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=90.11 E-value=2.4 Score=38.61 Aligned_cols=108 Identities=13% Similarity=0.067 Sum_probs=68.5
Q ss_pred ccchhhhHHHhhhCCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccc
Q 021668 173 RGVLAGRIMEINSKGKDVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKK 252 (309)
Q Consensus 173 ~~~~~GQ~~Dl~~~~~~~s~~~~~~i~~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~ 252 (309)
..++.|..+|+.... -.|.+++..-+.+=.|....+++. +++..+++ ...++.++|+|||+.+=+.|+..|-
T Consensus 107 ~~li~g~~~Dl~~~~-~~t~~dL~~Y~~~vAg~VG~m~~~---i~g~~~~~----~~~~A~~lG~AlQltNilRDv~eD~ 178 (294)
T 4hd1_A 107 LRLIEANRRDQRKHT-YDTWEDLRDYCRYSADPVGRLVLG---IFGCLDDE----RARLSDATCTALQVANHMQDIDRDL 178 (294)
T ss_dssp HHHHHHHHHHHHCSB-CCSHHHHHHHHHHHTHHHHHHHHH---HTTCCSHH----HHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHhccccCC-CCCHHHHHHHHHhccchHHHHHHH---HhCCCCHH----HHHHHHHHHHHHHHHHHHHhchhhh
Confidence 356788889986543 346666655443333444444433 34444443 4567899999999999888888775
Q ss_pred hhcCCCCchhhh----------------------hhhHHHHHHHHHHHHHHHHHHhccCCC
Q 021668 253 KEAGDDEATYPK----------------------LMGVAGAKRYAKELVAEANQELAYFDP 291 (309)
Q Consensus 253 ~~~G~gK~T~p~----------------------l~gle~A~~~a~~~~~~A~~~L~~l~~ 291 (309)
+ . |.+-+|. ...++.-...++.+.++|...+..+|.
T Consensus 179 ~-~--gR~YlP~~~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~ 236 (294)
T 4hd1_A 179 A-L--GRIYVPRADLEQFGATLDDIRARRATDGVRRCIALEVDRAQALFDEGRRLESLVPP 236 (294)
T ss_dssp H-T--TCBCSCHHHHHTTTCCHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSSCH
T ss_pred c-c--CceeCCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 4 2 4444443 113444456678888888888888865
No 49
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=77.19 E-value=41 Score=31.34 Aligned_cols=112 Identities=12% Similarity=-0.036 Sum_probs=68.0
Q ss_pred ccchhhhHHHhhhC--CCCCCHHHHHHHHHhchHHH-HHHH-HHHHHHhcCCCHHHHH--HHHHHHHHHHHHHHHHhchh
Q 021668 173 RGVLAGRIMEINSK--GKDVSLSELDFIKRLRCGKL-IEAS-VVCGVLIGGGSEEDIE--KLRKYGKCVGLAYQVWDDIL 246 (309)
Q Consensus 173 ~~~~~GQ~~Dl~~~--~~~~s~~~~~~i~~~KTg~L-f~~a-~~~Gailag~~~~~~~--~l~~~G~~lGlAFQI~DDiL 246 (309)
..++.+-..+..|. +.-+|.++|..+ +..|+.. +-.+ +.++. --..+++..+ .+.++-+..+...-+.|||.
T Consensus 187 ~~~~~a~l~Ea~w~~~g~vPs~eEYl~~-r~~s~g~~~~~~l~~~~~-g~~l~~~~~~~p~~~~l~~~~~~i~rL~NDi~ 264 (382)
T 3kb9_A 187 HTVIEAYDREFHNRTRGIVPGVEEYLEL-RRLTFAHWIWTDLLEPSS-GCELPDAVRKHPAYRRAALLSQEFAAWYNDLC 264 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCHHHHHHH-HHHHTTHHHHHHHHHHHH-TCCCCHHHHTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHH-HhhhcCHHHHHHHHHHHc-CCCCCHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 55778888877664 335789998887 4555443 2222 22221 1123444432 46677888899999999999
Q ss_pred hhcccchhcCCCCchhhhhh------hHHHHHHHHHHHHHHHHHHhcc
Q 021668 247 DNMKKKKEAGDDEATYPKLM------GVAGAKRYAKELVAEANQELAY 288 (309)
Q Consensus 247 D~~~~~~~~G~gK~T~p~l~------gle~A~~~a~~~~~~A~~~L~~ 288 (309)
.+..+.+ -| ...+...++ ..+.|.+.+.+.++++++.+..
T Consensus 265 S~~kE~~-~G-~~~N~V~~~m~~~g~s~eeA~~~v~~~i~~~~k~~~~ 310 (382)
T 3kb9_A 265 SLPKEIA-GD-EVHNLGISLITHHSLTLEEAIGEVRRRVEECITEFLA 310 (382)
T ss_dssp HHHHHHH-TT-CCCSHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-cC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9987554 24 223444332 5677777777777666665543
No 50
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=75.73 E-value=34 Score=30.87 Aligned_cols=112 Identities=10% Similarity=-0.008 Sum_probs=66.7
Q ss_pred ccchhhhHHHhhhCCC--CC-CHHHHHHHHHhchHHH-HHHH-HHHHHHhcCCCHHHHH--HHHHHHHHHHHHHHHHhch
Q 021668 173 RGVLAGRIMEINSKGK--DV-SLSELDFIKRLRCGKL-IEAS-VVCGVLIGGGSEEDIE--KLRKYGKCVGLAYQVWDDI 245 (309)
Q Consensus 173 ~~~~~GQ~~Dl~~~~~--~~-s~~~~~~i~~~KTg~L-f~~a-~~~Gailag~~~~~~~--~l~~~G~~lGlAFQI~DDi 245 (309)
..++.+-..+..|... -+ |.++|..+ +..|+.. +..+ +.++. --..+++..+ .+.++-+..+...-+.|||
T Consensus 144 ~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~-r~~s~g~~~~~~~~~~~~-g~~l~~~~~~~p~~~~l~~~~~~i~rL~NDl 221 (337)
T 1ps1_A 144 RNYFDGYVDEAESRFWNAPCDSAAQYLAM-RRHTIGVQPTVDLAERAG-RFEVPHRVFDSAVMSAMLQIAVDVNLLLNDI 221 (337)
T ss_dssp HHHHHHHHHHHTTC-------CHHHHHHH-HHHHTCHHHHHHHHHHHH-TCCCCHHHHTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHH-cccccchhhHHHHHHHHc-CCCCCHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 5567888887776543 47 89998887 4555543 2222 22221 1122444332 4567888889999999999
Q ss_pred hhhcccchhcCCCCchhhhhh------hHHHHHHHHHHHHHHHHHHhcc
Q 021668 246 LDNMKKKKEAGDDEATYPKLM------GVAGAKRYAKELVAEANQELAY 288 (309)
Q Consensus 246 LD~~~~~~~~G~gK~T~p~l~------gle~A~~~a~~~~~~A~~~L~~ 288 (309)
..+..+.+ -| ...+....+ ..+.|.+.+.+.++++++.+..
T Consensus 222 ~S~~kE~~-~G-~~~n~V~~~m~~~g~s~eeA~~~v~~~i~~~~~~~~~ 268 (337)
T 1ps1_A 222 ASLEKEEA-RG-EQNNMVMILRREHGWSKSRSVSHMQNEVRARLEQYLL 268 (337)
T ss_dssp HTHHHHHH-TT-CCCSHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHh-cC-CcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99987653 24 233444332 5677777777777777766543
No 51
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=71.48 E-value=53 Score=28.89 Aligned_cols=98 Identities=13% Similarity=0.101 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcCC-C------Cch
Q 021668 189 DVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGD-D------EAT 261 (309)
Q Consensus 189 ~~s~~~~~~i~~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G~-g------K~T 261 (309)
-+|.++|..+.+.-.|..+..++..-+.--..+++..+.+.++-+..+...-+.|||..+..+.+. |. + ..+
T Consensus 151 ~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~l~~~~~~~~~l~NDl~S~~kE~~~-g~~~h~~~~~~~n 229 (300)
T 1di1_A 151 IHELGHYLEYREKDVGKALLSALMRFSMGLRLSADELQDMKALEANCAKQLSVVNDIYSYDKEEEA-SRTGHKEGAFLCS 229 (300)
T ss_dssp CCSHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTCCC-----------CCC
T ss_pred CCCHHHHHHHHhhhccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-hccccccccccch
Confidence 478999988744444433332222212212346777778888999999999999999999875442 21 0 223
Q ss_pred hhhhh------hHHHHHHHHHHHHHHHHHHhc
Q 021668 262 YPKLM------GVAGAKRYAKELVAEANQELA 287 (309)
Q Consensus 262 ~p~l~------gle~A~~~a~~~~~~A~~~L~ 287 (309)
...++ ..+.|.+.+.++++++.+.+.
T Consensus 230 ~V~~~m~~~g~s~eeA~~~~~~~i~~~~~~~~ 261 (300)
T 1di1_A 230 AVKVLAEESKLGIPATKRVLWSMTREWETVHD 261 (300)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33322 466777777666666655443
No 52
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=65.62 E-value=45 Score=29.79 Aligned_cols=96 Identities=16% Similarity=0.068 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcCC-------CCch
Q 021668 189 DVSLSELDFIKRLRCGKLIEASVVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGD-------DEAT 261 (309)
Q Consensus 189 ~~s~~~~~~i~~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G~-------gK~T 261 (309)
-+|.++|..+.+.-.|..+..+...-+.--..+++..+.+.++-+..+...-+.|||..+..+.+. |. ...+
T Consensus 165 ~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~l~~~~~~~~~L~NDl~S~~kE~~~-g~~~~~~~~~~~N 243 (320)
T 3bny_A 165 PMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYEKELYT-SKTAHSEGGILCT 243 (320)
T ss_dssp CCCHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCC------------CCS
T ss_pred CCCHHHHHHHhhhcccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHh-hcccccccccccc
Confidence 478999988754444433332222211112346777777888999999999999999999765432 20 0234
Q ss_pred hhhhh------hHHHHHHHHHHHHHHHHHH
Q 021668 262 YPKLM------GVAGAKRYAKELVAEANQE 285 (309)
Q Consensus 262 ~p~l~------gle~A~~~a~~~~~~A~~~ 285 (309)
...++ ..+.|.+.+.+.+++..+.
T Consensus 244 ~V~~~m~~~g~s~eeA~~~~~~~i~~~~~~ 273 (320)
T 3bny_A 244 SVQILAQEADVTAEAAKRVLFVMCREWELR 273 (320)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 43332 3566666666655555443
No 53
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=62.30 E-value=14 Score=35.50 Aligned_cols=109 Identities=15% Similarity=0.063 Sum_probs=60.8
Q ss_pred ccchhhhHHHhhhC--CCCCCHHHHHHHHHhchHHHHHHHHHHHHHhc-CCCHHHHH--HHHHHHHHHHHHHHHHhchhh
Q 021668 173 RGVLAGRIMEINSK--GKDVSLSELDFIKRLRCGKLIEASVVCGVLIG-GGSEEDIE--KLRKYGKCVGLAYQVWDDILD 247 (309)
Q Consensus 173 ~~~~~GQ~~Dl~~~--~~~~s~~~~~~i~~~KTg~Lf~~a~~~Gaila-g~~~~~~~--~l~~~G~~lGlAFQI~DDiLD 247 (309)
..++.+-..+..|. +.-+|.++|..+ +..||...-.++ +....+ ...++..+ .+.++-+..+...-+.|||..
T Consensus 265 ~~~~~a~l~EA~W~~~g~vPsleEYl~~-R~~sg~~p~~~l-~e~~~g~~lp~~v~~~p~~~~L~~~~~~i~rL~NDI~S 342 (433)
T 3v1v_A 265 ARLHLGYLAEGAWAQTGHVPEVWEYLAM-RQFNNFRPCPTI-TDTVGGYELPADLHARPDMQRVIALAGNATTIVNDLYS 342 (433)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCHHHHHHH-HHHSSSTTTGGG-HHHHHTCCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHH-HHHHhHHHHHHH-HHHHcCCCCCHHHHhCchHHHHHHHHHHHHHHhchHHH
Confidence 34466666666664 235789998886 566654321111 111122 22444433 566778888899999999999
Q ss_pred hcccchhcCCCCchhhhhh------hHHHHHHHHHHHHHHHHH
Q 021668 248 NMKKKKEAGDDEATYPKLM------GVAGAKRYAKELVAEANQ 284 (309)
Q Consensus 248 ~~~~~~~~G~gK~T~p~l~------gle~A~~~a~~~~~~A~~ 284 (309)
|..+.+.-| ...+...++ ..+.|.+.+.+.+++..+
T Consensus 343 y~kE~~~gg-~~~N~V~~~mke~g~S~eeA~~~v~~~i~~~~~ 384 (433)
T 3v1v_A 343 YTKELNSPG-RHLNLPVVIAEREQLCERDAYLKAVEVHNELQH 384 (433)
T ss_dssp HHHHTTSSS-CCCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-CCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 987654312 122443332 355555554444444443
No 54
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=56.55 E-value=66 Score=32.01 Aligned_cols=109 Identities=14% Similarity=0.116 Sum_probs=66.8
Q ss_pred ccchhhhHHHhhhC--CCCCCHHHHHHHHHhchHHH-H-HHHHHHHHHhcC-CCHHHHHHH---HHHHHHHHHHHHHHhc
Q 021668 173 RGVLAGRIMEINSK--GKDVSLSELDFIKRLRCGKL-I-EASVVCGVLIGG-GSEEDIEKL---RKYGKCVGLAYQVWDD 244 (309)
Q Consensus 173 ~~~~~GQ~~Dl~~~--~~~~s~~~~~~i~~~KTg~L-f-~~a~~~Gailag-~~~~~~~~l---~~~G~~lGlAFQI~DD 244 (309)
..++.|-..+..|. +.-+|.++|.... .-|..+ . ...+.+|. +. .+++..+.+ .++-+..+...-+.||
T Consensus 376 ~~l~~ayl~EAkW~~~gyvPT~EEYl~na-~vSsg~~~l~~~~~~~m--g~~lt~e~~e~~~~~p~i~~~~~~I~RL~ND 452 (554)
T 3g4d_A 376 IRLAQSYLVEAKWTLQNYKPSFEEFKANA-LPTCGYAMLAITSFVGM--GDIVTPETFKWAASDPKIIQASTIICRFMDD 452 (554)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHH-GGGSCHHHHHHHHHHTS--CTTSCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHhcc-ceeehHHHHHHHHHHhc--CCCCCHHHHHhccccHHHHHHHHHHHHHhcc
Confidence 34566666666664 3357899888874 444433 2 22222221 21 356666654 4678889999999999
Q ss_pred hhhhcccchhcCCCCc-hhhhh----h--hHHHHHHHHHHHHHHHHHHhc
Q 021668 245 ILDNMKKKKEAGDDEA-TYPKL----M--GVAGAKRYAKELVAEANQELA 287 (309)
Q Consensus 245 iLD~~~~~~~~G~gK~-T~p~l----~--gle~A~~~a~~~~~~A~~~L~ 287 (309)
|..+....+. | .. +.... + ..+.|.+.+.+.++.+++.+.
T Consensus 453 I~S~k~E~~r-G--~van~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN 499 (554)
T 3g4d_A 453 VAEHKFKHRR-E--DDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLN 499 (554)
T ss_dssp HHHHCC---------CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhcc-C--CccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9998765432 3 22 33322 1 578899999999999988775
No 55
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=52.62 E-value=87 Score=31.11 Aligned_cols=109 Identities=11% Similarity=0.020 Sum_probs=67.6
Q ss_pred cchhhhHHHhhhC--CCCCCHHHHHHHHHhchHHH-HHHHHHHHHHhcC-CCHHHHHHH---HHHHHHHHHHHHHHhchh
Q 021668 174 GVLAGRIMEINSK--GKDVSLSELDFIKRLRCGKL-IEASVVCGVLIGG-GSEEDIEKL---RKYGKCVGLAYQVWDDIL 246 (309)
Q Consensus 174 ~~~~GQ~~Dl~~~--~~~~s~~~~~~i~~~KTg~L-f~~a~~~Gailag-~~~~~~~~l---~~~G~~lGlAFQI~DDiL 246 (309)
.++.+-..+..|. +.-+|.++|.....--+|.- +...+.+|+ +. .+++..+.+ -++-+..+...-+.|||.
T Consensus 375 ~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~m--g~~lt~e~~e~~~~~p~i~~~~~~i~RL~NDi~ 452 (555)
T 3n0f_A 375 DLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAV--VQNIKKEEIENLQKYHDIISRPSHIFRLCNDLA 452 (555)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHHHHH--CSSCCHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHHHhc--CCCCCHHHHHhcccchHHHHHHHHHHHHhccch
Confidence 4556666666664 33588998888743333322 222222222 32 456665544 467788899999999999
Q ss_pred hhcccchhcCCCCc-hhhhh------hhHHHHHHHHHHHHHHHHHHhc
Q 021668 247 DNMKKKKEAGDDEA-TYPKL------MGVAGAKRYAKELVAEANQELA 287 (309)
Q Consensus 247 D~~~~~~~~G~gK~-T~p~l------~gle~A~~~a~~~~~~A~~~L~ 287 (309)
.+....+. | .. +.... ...+.|.+.+.+.++.+++.+.
T Consensus 453 S~~~E~~r-G--~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN 497 (555)
T 3n0f_A 453 SASAEIAR-G--ETANSVSCYMRTKGISEELATESVMNLIDETWKKMN 497 (555)
T ss_dssp HHHHHHTT-T--CCCSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhc-C--CcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 98765432 3 32 33322 1578899999999999988775
No 56
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=48.52 E-value=86 Score=28.35 Aligned_cols=66 Identities=15% Similarity=0.106 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHhccCC
Q 021668 221 SEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGDDEATYPKLMGVAGAKRYAKELVAEANQELAYFD 290 (309)
Q Consensus 221 ~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G~gK~T~p~l~gle~A~~~a~~~~~~A~~~L~~l~ 290 (309)
+.+.+..+...-+-|=.+.-|-|||.|-- ... .|++|.-..+|...|-...+-+..+|.+.+..++
T Consensus 66 ~~~~~~~~A~aiEliH~aSLIHDDImD~s--~~R--RG~Pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~ 131 (285)
T 4fp4_A 66 MDPRILEAAAIVELLHVVSLLQDDVMDQH--DQR--RGIKTPRAMYGDGRAIVASDWLIAESIKMAVNLG 131 (285)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHTTC--SBS--SSSBCHHHHHCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHHHHHHHHCCCCCCC--CCC--CCCCcHHHhcChHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455566667777888999999997632 111 4899999999999888888888899999988774
No 57
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=45.64 E-value=1.2e+02 Score=28.02 Aligned_cols=76 Identities=14% Similarity=0.041 Sum_probs=52.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHhccCC
Q 021668 211 VVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGDDEATYPKLMGVAGAKRYAKELVAEANQELAYFD 290 (309)
Q Consensus 211 ~~~Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G~gK~T~p~l~gle~A~~~a~~~~~~A~~~L~~l~ 290 (309)
|.+++.+.|.+.+.+..+...-+.|=.+.-|-|||.|--. +-.|++|.-..+|...|-...+-+..+|.+.+...+
T Consensus 61 ~l~~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D~s~----~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~ 136 (341)
T 3mzv_A 61 TLAAARLVGYGGPFHVHLAATVEFIHTATLLHDDVVDESR----QRRGRPTANLLWDNKSSVLVGDYLFARSFQLMTDTG 136 (341)
T ss_dssp HHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHHC----------CTTSCCHHHHSCHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCccCCCC----CcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCC
Confidence 3334444455555555667777788888999999976422 115899998889988888888888888888888764
No 58
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=41.70 E-value=1.2e+02 Score=30.16 Aligned_cols=108 Identities=18% Similarity=0.123 Sum_probs=68.2
Q ss_pred cchhhhHHHhhhC--CCCCCHHHHHHHHHhchHHHHHHHHHHHHHhc-C-CCHHHHHHH---HHHHHHHHHHHHHHhchh
Q 021668 174 GVLAGRIMEINSK--GKDVSLSELDFIKRLRCGKLIEASVVCGVLIG-G-GSEEDIEKL---RKYGKCVGLAYQVWDDIL 246 (309)
Q Consensus 174 ~~~~GQ~~Dl~~~--~~~~s~~~~~~i~~~KTg~Lf~~a~~~Gaila-g-~~~~~~~~l---~~~G~~lGlAFQI~DDiL 246 (309)
.++.|-..+..|. +.-+|.++|.... .-|+...-+++.. .++ . .+++..+.+ -++-+..+...-+.|||.
T Consensus 373 ~l~~ayl~EAkW~~~gyvPT~EEYl~na-~vSsg~~~l~~~~--f~g~~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~ 449 (550)
T 3m00_A 373 EIVRNYNVESTWFIEGYTPPVSEYLSNA-LATTTYYLLATTS--YLGMKSATEQDFEWLSKNPKILEASVIICRVIDDTA 449 (550)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHHHHH-TGGGSHHHHHHHH--HHTCTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHhc-cccchHHHHHHHH--HHcCCCCcHHHHHhhcccHHHHHHHhhhheeeccch
Confidence 4566666666664 3357999888874 4444332111111 232 2 456655543 467788899999999999
Q ss_pred hhcccchhcCCCCc-hhhhh------hhHHHHHHHHHHHHHHHHHHhc
Q 021668 247 DNMKKKKEAGDDEA-TYPKL------MGVAGAKRYAKELVAEANQELA 287 (309)
Q Consensus 247 D~~~~~~~~G~gK~-T~p~l------~gle~A~~~a~~~~~~A~~~L~ 287 (309)
.+....+. | .. +.... ...+.|.+.+.+.++.+++.+.
T Consensus 450 S~k~E~~r-G--~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN 494 (550)
T 3m00_A 450 TYEVEKSR-G--QIATGIECCMRDYGISTKEAMAKFQNMAETAWKDIN 494 (550)
T ss_dssp SHHHHHHT-T--CTTSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhc-C--CcccHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 98765432 3 32 33322 1578899999999999988775
No 59
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=41.17 E-value=1.6e+02 Score=27.02 Aligned_cols=73 Identities=11% Similarity=0.004 Sum_probs=47.5
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHhccCC
Q 021668 214 GVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGDDEATYPKLMGVAGAKRYAKELVAEANQELAYFD 290 (309)
Q Consensus 214 Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G~gK~T~p~l~gle~A~~~a~~~~~~A~~~L~~l~ 290 (309)
++.+.|.+.+....+...-+-|=.++=|-|||.|--. .. .|++|.-..+|...|-...+-+..+|.+.+...+
T Consensus 58 ~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D~s~--~R--RG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~ 130 (334)
T 3rmg_A 58 VARLYGAVTPATLHAAVSLELLHTASLVHDDVVDEST--ER--RGQLSVNAIFNNKVSVLAGDYLLATSLVHAEQTN 130 (334)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHC-------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHHHHHcCccCCCC--Cc--CCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCC
Confidence 3333344555555666677888889999999977422 11 4899998889988887777778888888777653
No 60
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=40.49 E-value=1.6e+02 Score=28.91 Aligned_cols=110 Identities=16% Similarity=0.136 Sum_probs=65.8
Q ss_pred cchhhhHHHhhhC--CCCCCHHHHHHHHHhchHHH--HHHHHHHHHHhcC-CCHHHHHHH---HHHHHHHHHHHHHHhch
Q 021668 174 GVLAGRIMEINSK--GKDVSLSELDFIKRLRCGKL--IEASVVCGVLIGG-GSEEDIEKL---RKYGKCVGLAYQVWDDI 245 (309)
Q Consensus 174 ~~~~GQ~~Dl~~~--~~~~s~~~~~~i~~~KTg~L--f~~a~~~Gailag-~~~~~~~~l---~~~G~~lGlAFQI~DDi 245 (309)
.++.+-..+..|. +.-+|.++|.... .-|+.. +......|. ++ .+++..+.+ -++-+..++..-+.|||
T Consensus 366 ~l~~ayl~EAkW~~~g~vPt~eEYl~~~-~vS~g~~~l~~~~~~~~--g~~~t~e~~e~~~~~p~i~~~~~~i~RL~NDi 442 (543)
T 2ong_A 366 DLADKYMVEARWFYGGHKPSLEEYLENS-WQSISGPCMLTHIFFRV--TDSFTKETVDSLYKYHDLVRWSSFVLRLADDL 442 (543)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHH-HHHTCHHHHHHHHHHHH--SSCCCHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHhcc-cccchHHHHHHHHHHHc--CCCCCHHHHHHhcccHHHHHHHHHHHHHhccc
Confidence 3455555555554 2357899888864 444332 222222222 32 455555543 45777778888899999
Q ss_pred hhhcccchhcCCCCchhhhhh------hHHHHHHHHHHHHHHHHHHhcc
Q 021668 246 LDNMKKKKEAGDDEATYPKLM------GVAGAKRYAKELVAEANQELAY 288 (309)
Q Consensus 246 LD~~~~~~~~G~gK~T~p~l~------gle~A~~~a~~~~~~A~~~L~~ 288 (309)
..+..+.+ -| .-.+....+ ..+.|.+.+.+.++++++.+.+
T Consensus 443 ~S~~~E~~-rG-~~~n~V~cyMke~g~s~eeA~~~i~~~ie~~wk~ln~ 489 (543)
T 2ong_A 443 GTSVEEVS-RG-DVPKSLQCYMSDYNASEAEARKHVKWLIAEVWKKMNA 489 (543)
T ss_dssp HSSHHHHH-TS-CCCCHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhccc-cC-CccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88876543 23 122333221 4778888888889999888876
No 61
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=39.74 E-value=1.9e+02 Score=25.88 Aligned_cols=69 Identities=17% Similarity=0.113 Sum_probs=51.9
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhch--hhhcccchhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHhccCC
Q 021668 218 GGGSEEDIEKLRKYGKCVGLAYQVWDDI--LDNMKKKKEAGDDEATYPKLMGVAGAKRYAKELVAEANQELAYFD 290 (309)
Q Consensus 218 ag~~~~~~~~l~~~G~~lGlAFQI~DDi--LD~~~~~~~~G~gK~T~p~l~gle~A~~~a~~~~~~A~~~L~~l~ 290 (309)
.|.+.+.+..+...-+.|=.+.=|-||| .|=-.. . .|++|.-..+|...|....+-+...|.+.|...+
T Consensus 61 ~g~~~~~~~~~A~avEliH~asLIHDDIP~~D~s~~--R--RG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~ 131 (284)
T 2ftz_A 61 LGVEEEXLLDVAVAVELFHTASLIHDDLPPIDNADF--R--RGXPSCHRTYGEDIALLAGDGLFFLAFSQISXIG 131 (284)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCSE--E--TTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hCcCHHHHHHHHHHHHHHHHHHHHhCCchhcCCCCC--C--CCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3445555555666667777788899999 874321 1 4899999999999888888888889999998874
No 62
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=38.11 E-value=1.1e+02 Score=28.34 Aligned_cols=77 Identities=22% Similarity=0.105 Sum_probs=56.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHhccCC
Q 021668 211 VVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGDDEATYPKLMGVAGAKRYAKELVAEANQELAYFD 290 (309)
Q Consensus 211 ~~~Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G~gK~T~p~l~gle~A~~~a~~~~~~A~~~L~~l~ 290 (309)
|.+++.+.|.+.+.+..+...-+-|=.++=|-|||.|--.. . .|++|.-..+|...|....+-+...|.+.|..++
T Consensus 62 ~ll~~~~~g~~~~~~~~~A~avEliH~asLiHDDI~D~s~~-R---RG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~ 137 (352)
T 3nf2_A 62 AVLSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDLMDGDEQ-R---RHRDTVWKVHGPAQAILVGDALFALANEVLLELG 137 (352)
T ss_dssp HHHHHHTTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHTCCE-E---TTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-C---CCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCC
Confidence 33445555656555556666777788888999999874221 1 4889998889998888888888889999888875
Q ss_pred C
Q 021668 291 P 291 (309)
Q Consensus 291 ~ 291 (309)
.
T Consensus 138 ~ 138 (352)
T 3nf2_A 138 T 138 (352)
T ss_dssp S
T ss_pred C
Confidence 4
No 63
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=37.17 E-value=2e+02 Score=26.10 Aligned_cols=75 Identities=20% Similarity=0.187 Sum_probs=53.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHhccCC
Q 021668 212 VCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGDDEATYPKLMGVAGAKRYAKELVAEANQELAYFD 290 (309)
Q Consensus 212 ~~Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G~gK~T~p~l~gle~A~~~a~~~~~~A~~~L~~l~ 290 (309)
.+++.+.|.+.+.+..+...-+-+=.+.-|-||+.|=- ... .|++|.-..+|...|....+-+...|.+.+...+
T Consensus 53 l~~~~~~g~~~~~~~~~A~avEliH~asLiHDDi~D~s--~~R--RG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~ 127 (325)
T 3aqb_B 53 LLSGFLNDTQKDDLIRTAVSLELVHMASLVHDDYIDNS--DMR--RGNTSVHIAFDKDTAIRTGHFLLARALQNIATIN 127 (325)
T ss_dssp HHHHTTSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC--CEE--TTEECHHHHTCHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHHHhCccccCC--CCC--CCCCCcccccChHHHHHHHHHHHHHHHHHHHhCC
Confidence 33444445444444556666667777888999997732 111 4789988889999888888888999999988763
No 64
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=35.22 E-value=2.2e+02 Score=26.02 Aligned_cols=72 Identities=10% Similarity=0.031 Sum_probs=52.9
Q ss_pred HHHhcC-CCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHhccC
Q 021668 214 GVLIGG-GSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGDDEATYPKLMGVAGAKRYAKELVAEANQELAYF 289 (309)
Q Consensus 214 Gailag-~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G~gK~T~p~l~gle~A~~~a~~~~~~A~~~L~~l 289 (309)
++.+++ .+.+.+..+...-+.|=.++=|-|||.|--. .. .|++|.-..+|...|.....-+...|.+.+...
T Consensus 66 ~~~~g~~~~~~~~~~~A~aiEliH~asLiHDDi~D~s~--~R--RG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~ 138 (334)
T 3pko_A 66 FSTFGNAATPAQLQAGAAAIEILHVGTLIHDDVIDDSP--TR--RGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKS 138 (334)
T ss_dssp HHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCS--EE--TTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHhCccCCCCC--Cc--CCCccHHHHcCchHHHHHHHHHHHHHHHHHHhc
Confidence 333444 4666666677777888888999999977322 11 488998888888888888888888888888765
No 65
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=32.68 E-value=2.7e+02 Score=24.92 Aligned_cols=68 Identities=16% Similarity=0.123 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHhccCC
Q 021668 219 GGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGDDEATYPKLMGVAGAKRYAKELVAEANQELAYFD 290 (309)
Q Consensus 219 g~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G~gK~T~p~l~gle~A~~~a~~~~~~A~~~L~~l~ 290 (309)
|.+.+.+..+...-+.|=.+.=|-|||.|=-.. . .|++|.-..+|...|....+-+...|.+.+...+
T Consensus 41 ~~~~~~~~~~A~avEliH~asLiHDDi~D~s~~--R--RG~pt~h~~~G~~~AIl~GD~l~~~a~~~l~~~~ 108 (301)
T 2q80_A 41 KVPEDKLQIIIEVTEMLHNASLLIDDIEDNSKL--R--RGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLD 108 (301)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSE--E--TTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHccccCCCCC--C--CCCcchhhccCcHHHHHHHHHHHHHHHHHHHHCC
Confidence 445555556666777777888899999764221 1 4888988888988888888888888888888774
No 66
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=32.32 E-value=1.6e+02 Score=26.21 Aligned_cols=75 Identities=12% Similarity=-0.051 Sum_probs=55.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHhccCC
Q 021668 213 CGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGDDEATYPKLMGVAGAKRYAKELVAEANQELAYFD 290 (309)
Q Consensus 213 ~Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G~gK~T~p~l~gle~A~~~a~~~~~~A~~~L~~l~ 290 (309)
+++.+.|.+.+.+..+...=+.|=.+.-|-|||..-.+|.. .|++|.-..+|...|....+-+...|.+.|...+
T Consensus 50 ~~~~~~g~~~~~~~~~A~aiEliH~aSLIHDDI~~dD~d~R---RG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~ 124 (274)
T 3kra_B 50 AACELVGGDRSQAMAAAAAIHLVHAAAYVHEHLPLTDGSRP---VSKPAIQHKYGPNVELLTGDGIVPFGFELLAGSV 124 (274)
T ss_dssp HHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHTCCCSSSSSC---CCSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCccC---CCCCCchhhcChHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444455666566667777788889999999983223332 4899998889998888888888899999988764
No 67
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=29.25 E-value=1.3e+02 Score=27.95 Aligned_cols=74 Identities=16% Similarity=0.067 Sum_probs=44.5
Q ss_pred HHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHhccCC
Q 021668 213 CGVLIGG-GSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGDDEATYPKLMGVAGAKRYAKELVAEANQELAYFD 290 (309)
Q Consensus 213 ~Gailag-~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G~gK~T~p~l~gle~A~~~a~~~~~~A~~~L~~l~ 290 (309)
+++.+.| .+.+.+..+...-+.|=.+.=|-|||.|-- .-. .|++|.-..+|...|....+-+...|.+.+..++
T Consensus 84 l~~~~~~~~~~~~~~~~A~avEliH~asLIHDDImD~s--~~R--RG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~ 158 (360)
T 3lmd_A 84 LASEFGEKPLSENVIKAAVVVEITHLATLYHDDVMDEA--SMR--RGVPSANARWDNSVAILAGDILLAHASGLMSQLG 158 (360)
T ss_dssp HHHTTSSSTTCHHHHHHHHHHHHHHHHHHHHHHHHC---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHHHHHhCCCcCCC--CCC--CCCCcHHhhcChHHHHHHHHHHHHHHHHHHHHCC
Confidence 3444445 454555556666777778899999997732 211 4788888888887777777777777777776654
No 68
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=28.35 E-value=1.9e+02 Score=26.71 Aligned_cols=76 Identities=17% Similarity=0.179 Sum_probs=48.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHhccCC
Q 021668 211 VVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGDDEATYPKLMGVAGAKRYAKELVAEANQELAYFD 290 (309)
Q Consensus 211 ~~~Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G~gK~T~p~l~gle~A~~~a~~~~~~A~~~L~~l~ 290 (309)
|.+++.+.|.+.+....+...-+.|=.+.=|-|||.|--. .. .|++|.-..+|...|....+-+..+|.+.+...+
T Consensus 73 ~ll~~~~~g~~~~~~~~~A~aiEliH~asLiHDDi~D~s~--~R--RG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~ 148 (345)
T 3oyr_A 73 TVAAARLAGADNDHFQKLAAAVEFIHTATLLHDDVVDGSQ--LR--RGKVAAHLIWGGAQSVLVGDFLFARAFELMVETN 148 (345)
T ss_dssp HHHHHHHTTCCSSTHHHHHHHHHHHHHHHHHTTTTC-------------CCCSCCTTHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCcccCCCC--CC--CCCccHHHhhCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3344444455555555666677778888999999977322 11 4788888888888887777778888888887664
No 69
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=27.84 E-value=1.4e+02 Score=29.44 Aligned_cols=112 Identities=15% Similarity=0.047 Sum_probs=59.2
Q ss_pred cchhhhHHHhhhC--CCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcC-CCHHH-HHH---HHHHHHHHHHHHHHHhchh
Q 021668 174 GVLAGRIMEINSK--GKDVSLSELDFIKRLRCGKLIEASVVCGVLIGG-GSEED-IEK---LRKYGKCVGLAYQVWDDIL 246 (309)
Q Consensus 174 ~~~~GQ~~Dl~~~--~~~~s~~~~~~i~~~KTg~Lf~~a~~~Gailag-~~~~~-~~~---l~~~G~~lGlAFQI~DDiL 246 (309)
.++.+-..+..|. +.-+|.++|.... .-|+..-.+.+..-..++. .+++. .+. ..++-+..++..-+.|||.
T Consensus 372 ~l~~ayl~EAkW~~~g~vPt~eEYl~~~-~vS~g~~~l~~~~~~~~g~~lt~e~~~e~~~~~p~i~~~~~~i~RL~NDi~ 450 (549)
T 1n1b_A 372 DLVEAYFHEAKWYHSGYTPSLDEYLNIA-KISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLG 450 (549)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHHHHH-HHHTCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHhc-ccchhHHHHHHHHHHHcCCCCcHHHHHhhhcccHHHHHHHHHHHHHhcccc
Confidence 3445555555553 2357899888864 4443321111111111122 23444 443 3467778889999999998
Q ss_pred hhcccchhcCCCCchhhhhh------hHHHHHHHHHHHHHHHHHHhcc
Q 021668 247 DNMKKKKEAGDDEATYPKLM------GVAGAKRYAKELVAEANQELAY 288 (309)
Q Consensus 247 D~~~~~~~~G~gK~T~p~l~------gle~A~~~a~~~~~~A~~~L~~ 288 (309)
.+..+.+. | .-.+....+ ..+.|.+.+.+.++++++.+.+
T Consensus 451 S~~~E~~r-G-~v~n~V~cyMke~g~s~eeA~~~i~~~i~~~wk~ln~ 496 (549)
T 1n1b_A 451 TSYFELAR-G-DVPKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNT 496 (549)
T ss_dssp -----------CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcc-C-CccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88765432 3 112433322 4788888899999999886653
No 70
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=27.34 E-value=3e+02 Score=24.69 Aligned_cols=65 Identities=18% Similarity=0.113 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHhccC
Q 021668 221 SEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGDDEATYPKLMGVAGAKRYAKELVAEANQELAYF 289 (309)
Q Consensus 221 ~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G~gK~T~p~l~gle~A~~~a~~~~~~A~~~L~~l 289 (309)
+.+....+...-+.|=.+.=|-|||.|=- ... .|++|.-..+|...|....+-+...|.+.+...
T Consensus 59 ~~~~~~~~A~avEliH~asLiHDDi~D~s--~~R--RG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~ 123 (299)
T 1v4e_A 59 IGEDAISSLAALELVHLASLLHDDVIDGA--RFR--RGKETINFMYGDKAAVAAGDLVLVSAFHTVEEI 123 (299)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTC--SEE--TTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHhhCCCCCCC--CCC--CCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhC
Confidence 33344445556666667788999997732 111 478888888888887777777777888777765
No 71
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=26.71 E-value=2.1e+02 Score=25.60 Aligned_cols=84 Identities=14% Similarity=0.004 Sum_probs=54.2
Q ss_pred hHHHHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcCCCCchhhhhhhHHHHHHHHHHHHHH
Q 021668 203 CGKLIEAS-VVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGDDEATYPKLMGVAGAKRYAKELVAE 281 (309)
Q Consensus 203 Tg~Lf~~a-~~~Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G~gK~T~p~l~gle~A~~~a~~~~~~ 281 (309)
-|.-++-. |.+++.+.|.+.+.+..+...-+.|=.+.=|-||+.|=- . +-.|++|.-..+|...|....+-+...
T Consensus 48 gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLIHDDi~D~s--~--~RRG~pt~h~~~G~~~AIlaGD~Ll~~ 123 (289)
T 2azj_A 48 DGKRFRGTLNMFFTVALGGDIKDSYGGALAIEILHSASLALCDIVDLD--A--TRRGDKAAWVVYGNRKVIFITNYLIPT 123 (289)
T ss_dssp CCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHTTC--C--BSSSSBCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCC--C--CCCCCccHHHhcChHHHHHHHHHHHHH
Confidence 44444422 333344445454444455666666777788999996632 1 114899998888888888888888888
Q ss_pred HHHHh-ccCC
Q 021668 282 ANQEL-AYFD 290 (309)
Q Consensus 282 A~~~L-~~l~ 290 (309)
|.+.+ ...+
T Consensus 124 a~~~l~~~~~ 133 (289)
T 2azj_A 124 ALRIIQTSYG 133 (289)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHhcCc
Confidence 88888 6653
No 72
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=26.63 E-value=1.1e+02 Score=27.76 Aligned_cols=65 Identities=18% Similarity=0.139 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHhccC
Q 021668 221 SEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGDDEATYPKLMGVAGAKRYAKELVAEANQELAYF 289 (309)
Q Consensus 221 ~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G~gK~T~p~l~gle~A~~~a~~~~~~A~~~L~~l 289 (309)
+.+.+..+...-+-|=.+.=|-||+.|-- .-. .|++|.-..+|...|-...+-+..+|.+.+...
T Consensus 60 ~~~~~~~~A~avEliH~asLIHDDi~D~s--~~R--RG~pt~h~~~G~~~AIlaGD~Ll~~a~~ll~~~ 124 (295)
T 3ipi_A 60 SYSRSLNAALAVEMMHSASLIHDDLLDQG--LVR--RNLPSAPEKFGPSGALLCGDYLIAKSIAFISPY 124 (295)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHHHHHHH--TSC--TTSCCCCCSSCHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCcCcCCC--CCC--CCCccHHHhcCccHHHHHHHHHHHHHHHHHHHc
Confidence 33444556666777788899999997632 111 478888777777777766666777777777654
No 73
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=26.43 E-value=2.3e+02 Score=25.10 Aligned_cols=74 Identities=8% Similarity=-0.038 Sum_probs=53.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHhccC
Q 021668 211 VVCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGDDEATYPKLMGVAGAKRYAKELVAEANQELAYF 289 (309)
Q Consensus 211 ~~~Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G~gK~T~p~l~gle~A~~~a~~~~~~A~~~L~~l 289 (309)
|.+++.+.|.+.+.+..+...-+.|=.+.-|-|||.|-.. . .|++|.-..+|...|....+-+...|.+.|...
T Consensus 53 ~l~~~~~~g~~~~~~~~~A~aiEliH~aSLIHDDI~D~d~--R---RG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~ 126 (273)
T 3qkc_B 53 CVAACELVGGDRSDAMAAAAAVHLMHVAAYTHENLPLTDG--P---MSKSEIQHKFDPNIELLTGDGIIPFGLELMARS 126 (273)
T ss_dssp HHHHHHHTTCCGGGTHHHHHHHHHHHHHHHHHHSCCBTTB--C---SSSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCcccCcc--C---CCCCCchhhcCHHHHHHHHHHHHHHHHHHHHHc
Confidence 3334444455666666677777888889999999987532 2 368888777888888777777888888887765
No 74
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=26.22 E-value=1.7e+02 Score=27.04 Aligned_cols=64 Identities=13% Similarity=-0.006 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHhcc
Q 021668 221 SEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGDDEATYPKLMGVAGAKRYAKELVAEANQELAY 288 (309)
Q Consensus 221 ~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G~gK~T~p~l~gle~A~~~a~~~~~~A~~~L~~ 288 (309)
+.+.+..+...-+-|=.++-|-|||.|--.. . .|++|.-..+|...|....+-+...|.+.|..
T Consensus 63 ~~~~~~~~A~aiEliH~asLiHDDI~D~s~~-R---RG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~ 126 (358)
T 4dhd_A 63 QWRPALPAAAIVELIHNYSLIYDDIIDRGDV-R---RGLPTVRKAFGDNAAILVGIWYREAIEEAVLD 126 (358)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHHHHTTCCE-E---TTEECHHHHHCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCccccCCCC-c---CCCccHHHhcCHHHHHHHHHHHHHHHHHHHhC
Confidence 4444455666667778889999999774221 1 48999999999998888888888889888843
No 75
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=23.94 E-value=4e+02 Score=23.96 Aligned_cols=74 Identities=19% Similarity=0.062 Sum_probs=54.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhch--hhhcccchhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHhccCC
Q 021668 213 CGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDI--LDNMKKKKEAGDDEATYPKLMGVAGAKRYAKELVAEANQELAYFD 290 (309)
Q Consensus 213 ~Gailag~~~~~~~~l~~~G~~lGlAFQI~DDi--LD~~~~~~~~G~gK~T~p~l~gle~A~~~a~~~~~~A~~~L~~l~ 290 (309)
+.+.+.|.+.+.+..+...-+.|=.+.=|-||| .|- +.-. .|++|.-..+|...|....+-+...|.+.|...+
T Consensus 54 ~~~~~~g~~~~~~~~~A~aiEliH~asLIHDDip~mD~--s~~R--RG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~ 129 (304)
T 3lsn_A 54 AACEALGGKPEQANGAACAVELIHAYSLVHDDLPAMDD--DDLR--RGQPTTHKAFDEACAILAGDGLQSLAFSALLDPA 129 (304)
T ss_dssp HHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHTSTTTTC--CSEE--TTEECHHHHSCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCcccccC--CCcc--CCCCchHhhcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444556555556666677778888999999 663 2222 4899999999998888888888899999998763
No 76
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=23.67 E-value=2.4e+02 Score=25.65 Aligned_cols=72 Identities=19% Similarity=0.080 Sum_probs=51.9
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHhccC
Q 021668 214 GVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGDDEATYPKLMGVAGAKRYAKELVAEANQELAYF 289 (309)
Q Consensus 214 Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G~gK~T~p~l~gle~A~~~a~~~~~~A~~~L~~l 289 (309)
++.+.|.+.+....+...-+.|=.++-|-|||.|= +... .|++|.-..+|...|....+-+...|.+.|...
T Consensus 57 ~~~~~g~~~~~~~~~A~avEliH~asLiHDDi~D~--s~~R--RG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~ 128 (342)
T 1wy0_A 57 STEAVGGDPLRAIYPAVAIELIHNYSLVHDDIMDM--DETR--RGKPTVHRIWGVNMAILAGDLLFSKAFEAVARA 128 (342)
T ss_dssp HTTTTTSCGGGGHHHHHHHHHHHHHHHHHHHHHHT--CCCS--TTSCCHHHHHCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHCCcccC--CCCC--CCCCccccccChhHHHHHHHHHHHHHHHHHHHc
Confidence 33334545444445666667777788899999773 2211 589999999999988888888889999988876
No 77
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=23.53 E-value=4e+02 Score=23.85 Aligned_cols=73 Identities=19% Similarity=-0.024 Sum_probs=55.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhch--hhhcccchhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHhccC
Q 021668 213 CGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDI--LDNMKKKKEAGDDEATYPKLMGVAGAKRYAKELVAEANQELAYF 289 (309)
Q Consensus 213 ~Gailag~~~~~~~~l~~~G~~lGlAFQI~DDi--LD~~~~~~~~G~gK~T~p~l~gle~A~~~a~~~~~~A~~~L~~l 289 (309)
+.+.+.|.+.+.+..+...-+.|=.+.=|-||| .|= +.-. .|++|.-..+|...|....+-+...|.+.|...
T Consensus 51 ~~~~~~g~~~~~~~~~A~avEliH~asLIHDDip~mD~--s~~R--RG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~ 125 (297)
T 3m0g_A 51 ESAAIHGISMAQAMPAALAVEALHAYSLVHDDMPCMDN--DDLR--RGLPTVHKKWDDATAVLAGDALQTLAFELCTDP 125 (297)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTTC--CSEE--TTEECHHHHSCHHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhcCccccCC--CCcc--CCCCCchhhcChHHHHHHHHHHHHHHHHHHHHh
Confidence 344445667766666777777888889999999 553 2222 489999999999988888888899999999876
No 78
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=22.42 E-value=4.4e+02 Score=23.93 Aligned_cols=69 Identities=16% Similarity=0.133 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHhccCCC
Q 021668 219 GGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGDDEATYPKLMGVAGAKRYAKELVAEANQELAYFDP 291 (309)
Q Consensus 219 g~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G~gK~T~p~l~gle~A~~~a~~~~~~A~~~L~~l~~ 291 (309)
|.+.+.+..+...-+-|=.+.=|-|||.|=-. .. .|++|.-..+|...|....+-+...|.+.+..++.
T Consensus 56 ~~~~~~~~~~A~avEliH~asLiHDDI~D~s~--~R--RG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~ 124 (340)
T 2e8v_A 56 NLPKDQLAIVSQIVELLHNSSLLIDDIEDNAP--LR--RGQTTSHLIFGVPSTINTANYMYFRAMQLVSQLTT 124 (340)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCS--EE--TTEECHHHHTCHHHHHHHHHHHHHHHHHHGGGGCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCccccCCC--CC--CCCcchhhccCchHHHHHHHHHHHHHHHHHHHcCC
Confidence 44555555566666667778889999976322 11 48899988899999988888899999999988743
No 79
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=21.95 E-value=2.5e+02 Score=28.90 Aligned_cols=109 Identities=15% Similarity=0.062 Sum_probs=66.3
Q ss_pred cchhhhHHHhhhC--CCCCCHHHHHHHHHhchHHH--HHHHHHHHHHhcC-CCHHHHHHH---HHHHHHHHHHHHHHhch
Q 021668 174 GVLAGRIMEINSK--GKDVSLSELDFIKRLRCGKL--IEASVVCGVLIGG-GSEEDIEKL---RKYGKCVGLAYQVWDDI 245 (309)
Q Consensus 174 ~~~~GQ~~Dl~~~--~~~~s~~~~~~i~~~KTg~L--f~~a~~~Gailag-~~~~~~~~l---~~~G~~lGlAFQI~DDi 245 (309)
.++.+-..+..|. +.-+|.++|.... ..|..+ +...+..+ ++. .+++..+.. .++-+..+...-+.|||
T Consensus 577 ~l~~ayl~EAkW~~~gyvPT~eEYl~na-~vSsg~~~l~~~~~~~--~G~~lt~e~~e~~~~~~~l~~~~~~I~RL~NDi 653 (764)
T 3p5p_A 577 LYFNCYVQEREWLEAGYIPTFEEYLKTY-AISVGLGPCTLQPILL--MGELVKDDVVEKVHYPSNMFELVSLSWRLTNDT 653 (764)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHH-HHHTCHHHHHHHHHHT--SSSCCCGGGHHHHSTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHhc-chhchHHHHHHHHHHH--cCCCCcHHHHhhhhhhHHHHHHHHHHHHhhhcc
Confidence 4455555665553 3357899888864 344333 22222222 232 345555555 46788889999999999
Q ss_pred hhhcccchhcCCCCc-hhhhh-------hhHHHHHHHHHHHHHHHHHHhcc
Q 021668 246 LDNMKKKKEAGDDEA-TYPKL-------MGVAGAKRYAKELVAEANQELAY 288 (309)
Q Consensus 246 LD~~~~~~~~G~gK~-T~p~l-------~gle~A~~~a~~~~~~A~~~L~~ 288 (309)
..+..+.+. | .. +.... ...+.|.+.+.+.++.+++.|.+
T Consensus 654 ~S~k~E~~r-G--~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~ 701 (764)
T 3p5p_A 654 KTYQAEKAR-G--QQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASF 701 (764)
T ss_dssp HHHHHHHTT-T--CCCSHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHhc-C--CcchHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 998765432 3 22 33221 24788888888888888887753
No 80
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=21.22 E-value=4.6e+02 Score=23.67 Aligned_cols=68 Identities=19% Similarity=-0.016 Sum_probs=50.4
Q ss_pred cCCCHHHH--HHHHHHHHHHHHHHHHHhch--hhhcccchhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHhccC
Q 021668 218 GGGSEEDI--EKLRKYGKCVGLAYQVWDDI--LDNMKKKKEAGDDEATYPKLMGVAGAKRYAKELVAEANQELAYF 289 (309)
Q Consensus 218 ag~~~~~~--~~l~~~G~~lGlAFQI~DDi--LD~~~~~~~~G~gK~T~p~l~gle~A~~~a~~~~~~A~~~L~~l 289 (309)
.|.+.+.. ..+...-+.|=.+.=|-||| .|=. .-. .|++|.-..+|...|....+-+...|.+.|...
T Consensus 63 ~g~~~~~~~~~~~A~aiEliH~aSLIHDDiP~mD~s--~~R--RG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~ 134 (309)
T 3pde_A 63 LGVTFVPERHWRPVMALELLHTYSLIHDDLPAMDND--ALR--RGEPTNHVKFGAGMATLAGDGLLTLAFQWLTAT 134 (309)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHHHHHHHSTTTTCC--SEE--TTEECHHHHHCHHHHHHHHHHHHHHHHHHHTSS
T ss_pred hCCCHHHHhHhHHHHHHHHHHHHHHHHCCchhccCC--CCC--CCCcchhhhcChHHHHHHHHHHHHHHHHHHHhc
Confidence 34444344 45566667777788899999 7742 211 489999999999999888888899999999875
No 81
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=20.94 E-value=4e+02 Score=24.22 Aligned_cols=71 Identities=18% Similarity=0.055 Sum_probs=52.3
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHhch--hhhcccchhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHhccCC
Q 021668 216 LIGGGSEEDIEKLRKYGKCVGLAYQVWDDI--LDNMKKKKEAGDDEATYPKLMGVAGAKRYAKELVAEANQELAYFD 290 (309)
Q Consensus 216 ilag~~~~~~~~l~~~G~~lGlAFQI~DDi--LD~~~~~~~~G~gK~T~p~l~gle~A~~~a~~~~~~A~~~L~~l~ 290 (309)
.+.|.+.+.+..+...-+.|=.+.=|-||| .|= +.-. .|++|.-..+|...|....+-+...|.+.|...+
T Consensus 63 ~~~g~~~~~~~~~A~avEliH~aSLIHDDip~mD~--~~~R--RG~pt~h~~~G~~~AIlaGD~L~~~Af~~l~~~~ 135 (324)
T 3ts7_A 63 QTIGVAADLLDGPACAVEFIHVYSLIHDDLPAMDD--DDLR--RGKPTCHKAYDEATAILAGDGLQALAFHVLAQDP 135 (324)
T ss_dssp HHHTCCGGGTHHHHHHHHHHHHHHHHHHTSTTTTC--CSEE--TTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHhhcCcccccC--CCcc--CCCCchhhhcChHHHHHHHHHHHHHHHHHHHhcc
Confidence 333445555556666777778888999999 663 2222 4899999999998888888888899999888763
No 82
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=20.22 E-value=4.7e+02 Score=23.44 Aligned_cols=62 Identities=19% Similarity=0.123 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhch--hhhcccchhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHhccC
Q 021668 224 DIEKLRKYGKCVGLAYQVWDDI--LDNMKKKKEAGDDEATYPKLMGVAGAKRYAKELVAEANQELAYF 289 (309)
Q Consensus 224 ~~~~l~~~G~~lGlAFQI~DDi--LD~~~~~~~~G~gK~T~p~l~gle~A~~~a~~~~~~A~~~L~~l 289 (309)
.+..+...-+.|=.++-|-||| .|-- .-. .|++|.-..+|...|....+-+...|.+.|...
T Consensus 72 ~~~~~A~avEliH~asLIHDDIP~mD~s--~~R--RG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~ 135 (302)
T 3p8l_A 72 QDYQVAASLEMIHTYSLIHDDLPAMDDD--DLR--RGKPTNHKVFGEATAILAGDGLLTGAFQLLSLS 135 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTTTCC--SEE--TTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHCCchhccCC--Ccc--CCCcchhhhcChHHHHHHHHHHHHHHHHHHHhc
Confidence 4555666677788889999999 7742 222 489999999999888888888888898888765
No 83
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=20.17 E-value=4.9e+02 Score=23.58 Aligned_cols=67 Identities=16% Similarity=0.047 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhch--hhhcccchhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHhccC
Q 021668 219 GGSEEDIEKLRKYGKCVGLAYQVWDDI--LDNMKKKKEAGDDEATYPKLMGVAGAKRYAKELVAEANQELAYF 289 (309)
Q Consensus 219 g~~~~~~~~l~~~G~~lGlAFQI~DDi--LD~~~~~~~~G~gK~T~p~l~gle~A~~~a~~~~~~A~~~L~~l 289 (309)
|.+.+.+..+...-+.|=.+.=|-||| .|- +.-. .|++|.-..+|...|....+-+...|.+.|...
T Consensus 61 g~~~~~~~~~A~avEliH~aSLIHDDip~mD~--s~~R--RG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~ 129 (317)
T 4f62_A 61 GDISSLTDASAAALESIHAYSLIHDDLPAMDN--DELR--RGKPTCHIQFDEATAILAGDALQTFAFELLSNP 129 (317)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHSTTSCC-----------CCHHHHSCHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCcccccC--CCCc--CCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555556666777778888999999 553 2222 489999999999988888888889999999876
No 84
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=20.01 E-value=4.8e+02 Score=23.47 Aligned_cols=74 Identities=20% Similarity=0.029 Sum_probs=51.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhchhhhcccchhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHhccC
Q 021668 212 VCGVLIGGGSEEDIEKLRKYGKCVGLAYQVWDDILDNMKKKKEAGDDEATYPKLMGVAGAKRYAKELVAEANQELAYF 289 (309)
Q Consensus 212 ~~Gailag~~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~~~~~~G~gK~T~p~l~gle~A~~~a~~~~~~A~~~L~~l 289 (309)
.+++.+.|.+.+....+...-+-|=.++=|-|||.|=-. .. .|++|.-..+|...|....+-+...|.+.+..+
T Consensus 48 l~~~~~~~~~~~~~~~~A~avEliH~asLihDDi~D~s~--~R--RG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~ 121 (330)
T 1wmw_A 48 VYSALAHGAPLEAGLEAATALELFQNWVLVHDDIEDGSE--ER--RGRPALHRLHPMPLALNAGDAMHAEMWGLLAEG 121 (330)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--EE--TTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcccccCCC--CC--CCCCccccccCchHHHHHHHHHHHHHHHHHHhc
Confidence 334444455665555666677777788899999977321 11 478888888888888777777777887777654
Done!