Query 021671
Match_columns 309
No_of_seqs 272 out of 1841
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 07:35:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021671.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021671hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iuq_A Glycerol-3-phosphate ac 99.4 2.1E-13 7.1E-18 129.6 5.3 115 3-120 129-275 (367)
2 2lnd_A De novo designed protei 37.3 89 0.003 23.1 6.0 43 67-113 36-78 (112)
3 1unk_A Colicin E7; immunity pr 31.0 24 0.00082 26.4 2.0 50 68-117 34-85 (87)
4 1fr2_A Colicin E9 immunity pro 28.6 25 0.00087 26.2 1.8 50 68-117 33-84 (86)
5 3u43_A Colicin-E2 immunity pro 24.1 33 0.0011 26.0 1.7 53 68-120 33-87 (94)
6 3hno_A Pyrophosphate-dependent 19.1 1.8E+02 0.0063 27.6 6.3 123 66-198 88-238 (419)
7 1gxg_A Colicin E8 immunity pro 18.5 64 0.0022 23.9 2.3 49 69-117 33-83 (85)
8 3mfq_A TROA, high-affinity zin 15.8 3.3E+02 0.011 23.9 6.9 69 44-116 169-242 (282)
9 1msz_A DNA-binding protein smu 14.2 1.7E+02 0.0057 21.7 3.6 43 68-114 18-60 (86)
10 3arc_X Photosystem II PSBX pro 13.1 2.8E+02 0.0094 17.5 4.2 9 273-281 27-35 (39)
No 1
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=99.38 E-value=2.1e-13 Score=129.63 Aligned_cols=115 Identities=12% Similarity=0.074 Sum_probs=82.7
Q ss_pred CceEEEEeCCCCcchHHHHHHHHhhcC--CCCceEEEEchhhcccchH---HHHHHhcCcEEEecCCc-----------c
Q 021671 3 KEHALVICNHRSDIDWLVGWVVAQRKG--CLGSTLAIIKKEAKHLPFI---GWSMWFSEYVFLERRWN-----------K 66 (309)
Q Consensus 3 ke~~lii~NH~S~~D~lvl~~l~~r~g--~lg~~kfv~K~el~~~Pvi---Gw~~~~~~~ifv~R~~~-----------~ 66 (309)
++++|+++||||+.|.+++..++.+.+ .-.++.||+|+++...|+. +++ +.+++|+..|.-. .
T Consensus 129 ~~~vIfisNHQS~~D~~vi~~~l~~~~~~l~~~~~fVAk~eL~~~Pl~~Pfs~g-~~l~cI~~kk~id~~p~l~r~~~r~ 207 (367)
T 1iuq_A 129 GHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIG-RNLICVYSKKHMFDIPELTETKRKA 207 (367)
T ss_dssp TCEEEEEECCCCTTHHHHHHHHHTTTCHHHHHHCEEEECTHHHHCTTTHHHHHT-SEEEECCCGGGTTSSGGGHHHHHHH
T ss_pred CCcEEEEECCccchhHHHHHHHHhhcccccccceEEEeehhhhcCccccchhhh-hheeeEEecccCCCcchhhhhhhHH
Confidence 579999999999999999998875411 0116899999999977766 544 3355677633322 3
Q ss_pred CHHHHHHHHHHhhcCCCCeEEEEeecccccchhh----------HHHHH----HHHHhcCCC--CCceec
Q 021671 67 DEQTLKSGFKRLVDFPMPFWLALYVEGTRFTEAK----------LLAAQ----EYALSRGLP--IPRNVL 120 (309)
Q Consensus 67 D~~~l~~~l~~l~~~~~~~~llIFPEGTR~t~~k----------~~~s~----~~A~~~glp--~l~~vL 120 (309)
+.++|++..+.|++.+.. ++|||||||..++. ..+|. .+|.+.|.| +++-++
T Consensus 208 n~ksl~~~~~~Lk~GG~s--I~IFPEGTRsR~~~~~g~l~~~~Fk~gs~~~~~~LA~ksg~P~hIvPvaI 275 (367)
T 1iuq_A 208 NTRSLKEMALLLRGGSQL--IWIAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLAL 275 (367)
T ss_dssp HHHHHHHHHHHHHHCCCE--EEECTTCSCCCBCTTTCCBCCCCCCHHHHHHHHHHHHTSSSCEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCeE--EEEeCCCCCCCCCCCCCccccccccchhhhHHHHHHHHcCCCceEEEEEE
Confidence 457788888888875645 88999999998622 23566 888888888 665543
No 2
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=37.26 E-value=89 Score=23.11 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHhhcCCCCeEEEEeecccccchhhHHHHHHHHHhcCC
Q 021671 67 DEQTLKSGFKRLVDFPMPFWLALYVEGTRFTEAKLLAAQEYALSRGL 113 (309)
Q Consensus 67 D~~~l~~~l~~l~~~~~~~~llIFPEGTR~t~~k~~~s~~~A~~~gl 113 (309)
..+.++..++.+++.+.| +++|..|.. ......-+.-|++.|+
T Consensus 36 ssqdirdiiksmkdngkp--lvvfvngas--qndvnefqneakkegv 78 (112)
T 2lnd_A 36 SSQDIRDIIKSMKDNGKP--LVVFVNGAS--QNDVNEFQNEAKKEGV 78 (112)
T ss_dssp SHHHHHHHHHHHTTCCSC--EEEEECSCC--HHHHHHHHHHHHHHTC
T ss_pred chhhHHHHHHHHHhcCCe--EEEEecCcc--cccHHHHHHHHHhcCc
Confidence 456788889999999999 999999984 3333444555666665
No 3
>1unk_A Colicin E7; immunity protein, dimeric structure, RNAse active site; 1.80A {Escherichia coli} SCOP: a.28.2.1 PDB: 1mz8_A 1ayi_A 2jaz_A 2jb0_A 2jbg_A 7cei_A 1znv_A 1cei_A 1ujz_A 2erh_A
Probab=31.01 E-value=24 Score=26.43 Aligned_cols=50 Identities=16% Similarity=0.180 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEeec-ccccchhh-HHHHHHHHHhcCCCCCc
Q 021671 68 EQTLKSGFKRLVDFPMPFWLALYVE-GTRFTEAK-LLAAQEYALSRGLPIPR 117 (309)
Q Consensus 68 ~~~l~~~l~~l~~~~~~~~llIFPE-GTR~t~~k-~~~s~~~A~~~glp~l~ 117 (309)
...+...+.++...|...=|+.||| |..-+++. .+...++-+++|+|-++
T Consensus 34 ~d~lv~hF~~iteHP~gsDLIfYP~~~~edsPEgIv~~iKeWRa~nG~pgFK 85 (87)
T 1unk_A 34 LDVLLEHFVKITEHPDGTDLIYYPSDNRDDSPEGIVKEIKEWRAANGKPGFK 85 (87)
T ss_dssp HHHHHHHHHHHHCCTTTTHHHHSCCSSCCCSHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHhcCCCCCCCeeeeCCCCCCCCHHHHHHHHHHHHHHcCCcccC
Confidence 4556667777778887777899998 45555554 56778899999999776
No 4
>1fr2_A Colicin E9 immunity protein; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: a.28.2.1 PDB: 1e0h_A 1emv_A 1imp_A 1imq_A 2k5x_A 2vln_A 2vlp_A 2vlq_A 2vlo_A 2gzf_A 2gzg_A 2gzi_A 2gyk_A 2gzj_A 2gze_A 1bxi_A 3gkl_C 3gjn_A
Probab=28.61 E-value=25 Score=26.16 Aligned_cols=50 Identities=14% Similarity=0.176 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEeec-ccccchhh-HHHHHHHHHhcCCCCCc
Q 021671 68 EQTLKSGFKRLVDFPMPFWLALYVE-GTRFTEAK-LLAAQEYALSRGLPIPR 117 (309)
Q Consensus 68 ~~~l~~~l~~l~~~~~~~~llIFPE-GTR~t~~k-~~~s~~~A~~~glp~l~ 117 (309)
...+...+.++...|.+.=|+.+|| |-..+++. .....++-+++|+|-++
T Consensus 33 ~d~ll~~f~~~teHP~gSDLIfyP~~~~e~spE~Iv~~ik~wRa~~G~pgFK 84 (86)
T 1fr2_A 33 LVKLVTHFAEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFK 84 (86)
T ss_dssp HHHHHHHHHHHHCCTTTTHHHHSCCTTCCCSHHHHHHHHHHHHHHTTCCCCB
T ss_pred HHHHHHHHHHhcCCCCcCceeecCCCCCCCCHHHHHHHHHHHHHHcCCcccC
Confidence 3455556666666777777888997 45555554 56788899999999776
No 5
>3u43_A Colicin-E2 immunity protein; protein-protein complex, DNAse, high affinity, protein bindi; 1.72A {Escherichia coli} PDB: 2no8_A 2wpt_A
Probab=24.12 E-value=33 Score=26.01 Aligned_cols=53 Identities=19% Similarity=0.211 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEeeccc-ccchhh-HHHHHHHHHhcCCCCCceec
Q 021671 68 EQTLKSGFKRLVDFPMPFWLALYVEGT-RFTEAK-LLAAQEYALSRGLPIPRNVL 120 (309)
Q Consensus 68 ~~~l~~~l~~l~~~~~~~~llIFPEGT-R~t~~k-~~~s~~~A~~~glp~l~~vL 120 (309)
...+...+.++...|.+.=|+.|||.. ..+++. .....++-+++|+|-++.-|
T Consensus 33 ~d~ll~~fe~iteHP~gSDLIfyP~~~~e~SPEgIv~~IKeWRa~nG~pgFK~~~ 87 (94)
T 3u43_A 33 DNKLVREFERLTEHPDGSDLIYYPRDDREDSPEGIVKEIKEWRAANGKSGFKQGL 87 (94)
T ss_dssp HHHHHHHHHHHHCCTTTTHHHHSCCTTSCSSHHHHHHHHHHHHHHTTCCCCBCCS
T ss_pred HHHHHHHHHHhCCCCCccCeeeeCCCCCCCCHHHHHHHHHHHHHHcCCccchhhH
Confidence 344555566666667766688899754 445554 56788999999999887643
No 6
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=19.12 E-value=1.8e+02 Score=27.61 Aligned_cols=123 Identities=10% Similarity=0.156 Sum_probs=62.0
Q ss_pred cCHHHHHHHHHHhhcCCCCeEEEEeecccccchhhHHHHHHHHHhcCCCCCceeccCC-----------CcchhhhHhhc
Q 021671 66 KDEQTLKSGFKRLVDFPMPFWLALYVEGTRFTEAKLLAAQEYALSRGLPIPRNVLIPR-----------TKGFVSAVNNM 134 (309)
Q Consensus 66 ~D~~~l~~~l~~l~~~~~~~~llIFPEGTR~t~~k~~~s~~~A~~~glp~l~~vL~PR-----------tkGf~~~l~~l 134 (309)
++.+..++.++.+++.+-. .++.=|..-+-..-..-.++++++|.+ ++.+=+|+ |=||..+++..
T Consensus 88 ~~~~~~~~~~~~l~~~~Id---~Lv~IGGdgS~~~A~~L~~~~~~~g~~-i~vIGiPkTIDNDl~~tD~t~GFdTA~~~~ 163 (419)
T 3hno_A 88 QNRREYERLIEVFKAHDIG---YFFYNGGGDSADTCLKVSQLSGTLGYP-IQAIHVPKTVDNDLPITDCCPGFGSVAKYI 163 (419)
T ss_dssp -CHHHHHHHHHHHHHTTEE---EEEEEESHHHHHHHHHHHHHHHHTTCC-CEEEEEECCTTCCCSSSSSCTTHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHHHhCCC-ccEEEecccccCCCcCCCCCCCchHHHHHH
Confidence 3567778888888876643 244445533322222223444566643 23333444 45888887764
Q ss_pred cCCCcce-eeeeeecCC-----------CCCCcchhhhcccCc-----eEEEEEEEeeeCCCCCCCHHHHHHHHHHHHHH
Q 021671 135 RSFVPAI-YDCTVAVPK-----------SQPPPTMVRMFRGQP-----SVVNVEIRRHSMEELPKTADGIAQWCKDVFVT 197 (309)
Q Consensus 135 r~~~~aV-yDvTi~y~~-----------~~~~ptl~~~l~g~p-----~~v~v~vrripi~~iP~~~~~~~~WL~~~~~e 197 (309)
...++.+ .|.. .+.+ +. ......+..|-. .-+++.+ +.|+|-+.+++.+.+.+++++
T Consensus 164 ~~~i~~~~~d~~-ss~~sh~rv~iVEvMGR-~aG~lAl~aglA~~~~~~gad~il----IPE~~f~~~~~~~~i~~~~~~ 237 (419)
T 3hno_A 164 AVSTLEASFDVA-SMSATSTKVFVLEVMGR-HAGWIAAAGGLASSPEREIPVVIL----FPEISFDKQKFLAKVDSCVKK 237 (419)
T ss_dssp HHHHHHHHHHHH-HHTTTSCCEEEEEECCS-SCCHHHHGGGGGCCSSSCCCEEEE----CTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hhccCCCcEEEEEcCCc-ChhHHHHHHHHhcccCCCCceEEE----eCCCCCCHHHHHHHHHHHHHh
Confidence 4333222 2321 1111 11 111112212211 3456655 788888888888887777665
Q ss_pred H
Q 021671 198 K 198 (309)
Q Consensus 198 K 198 (309)
|
T Consensus 238 ~ 238 (419)
T 3hno_A 238 F 238 (419)
T ss_dssp H
T ss_pred C
Confidence 4
No 7
>1gxg_A Colicin E8 immunity protein; inhibitor, inhibitor protein of DNAse colicin E8, bacteriocin immunity, plasmid,; NMR {Escherichia coli} SCOP: a.28.2.1 PDB: 1gxh_A
Probab=18.54 E-value=64 Score=23.90 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhcCCCCeEEEEeec-ccccchhh-HHHHHHHHHhcCCCCCc
Q 021671 69 QTLKSGFKRLVDFPMPFWLALYVE-GTRFTEAK-LLAAQEYALSRGLPIPR 117 (309)
Q Consensus 69 ~~l~~~l~~l~~~~~~~~llIFPE-GTR~t~~k-~~~s~~~A~~~glp~l~ 117 (309)
..+...+.++...|.+.=|+.+|| +-..+++. .....++-+++|+|-++
T Consensus 33 d~ll~~f~~~teHP~gSDLIfyP~~~~e~spE~Iv~~ik~wRa~~g~p~Fk 83 (85)
T 1gxg_A 33 DDNLEHFISVTEHPSGSDLIYYPEGNNDGSPEAVIKEIKEWRAANGKSGFK 83 (85)
T ss_dssp HHHHHHHHHTTCCTTTTHHHHSCCTTCCSSHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHhcCCCCcCceeecCCCCCCCCHHHHHHHHHHHHHHcCCcccC
Confidence 344444555555666666888997 44455554 56788899999999776
No 8
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=15.85 E-value=3.3e+02 Score=23.88 Aligned_cols=69 Identities=10% Similarity=0.150 Sum_probs=47.6
Q ss_pred ccchHHHHHHhcCcEEEe-----cCCccCHHHHHHHHHHhhcCCCCeEEEEeecccccchhhHHHHHHHHHhcCCCCC
Q 021671 44 HLPFIGWSMWFSEYVFLE-----RRWNKDEQTLKSGFKRLVDFPMPFWLALYVEGTRFTEAKLLAAQEYALSRGLPIP 116 (309)
Q Consensus 44 ~~PviGw~~~~~~~ifv~-----R~~~~D~~~l~~~l~~l~~~~~~~~llIFPEGTR~t~~k~~~s~~~A~~~glp~l 116 (309)
+-|.+|++....|.-.+. ...+...+.+.+..+.+++.+-+ +||.|-+ ++++..+.-.+.|++.|.|+.
T Consensus 169 ~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~---~if~e~~-~~~~~~~~l~~~a~~~g~~v~ 242 (282)
T 3mfq_A 169 PHDAFNYFAASYDFTLYAPQGVSTDSEVANSDMIETVNLIIDHNIK---AIFTEST-TNPERMKKLQEAVKAKGGQVE 242 (282)
T ss_dssp SSSCCHHHHHHTTCEEECSSCSSSCSCCCHHHHHHHHHHHHHHTCC---EEECBTT-SCTHHHHHHHHHHHTTSCCCE
T ss_pred ECchHHHHHHHCCCeEecccccCCCCCCCHHHHHHHHHHHHHcCCC---EEEEeCC-CChHHHHHHHHHHHhcCCceE
Confidence 457788888888776553 22334578888888888876644 5788865 444444555677899999864
No 9
>1msz_A DNA-binding protein smubp-2; R3H fold; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=14.18 E-value=1.7e+02 Score=21.65 Aligned_cols=43 Identities=9% Similarity=0.078 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEeecccccchhhHHHHHHHHHhcCCC
Q 021671 68 EQTLKSGFKRLVDFPMPFWLALYVEGTRFTEAKLLAAQEYALSRGLP 114 (309)
Q Consensus 68 ~~~l~~~l~~l~~~~~~~~llIFPEGTR~t~~k~~~s~~~A~~~glp 114 (309)
...+...+..+.+.... -+.||- .++........++|++.||.
T Consensus 18 ~~~i~~~l~~F~~~~~~--~l~FP~--sLs~~eR~~IH~lA~~~GL~ 60 (86)
T 1msz_A 18 VDHFRAMIVEFMASKKM--QLEFPP--SLNSHDRLRVHQIAEEHGLR 60 (86)
T ss_dssp CHHHHHHHHHHHHHTCS--EEEECT--TCCSHHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHHhcCCCc--EEEcCC--CCCHHHHHHHHHHHHHcCCC
Confidence 45677888888765554 778994 45666667788899998875
No 10
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=13.12 E-value=2.8e+02 Score=17.47 Aligned_cols=9 Identities=33% Similarity=0.423 Sum_probs=5.8
Q ss_pred HHhhhcccc
Q 021671 273 LIQSSESEH 281 (309)
Q Consensus 273 ~i~~~~~~~ 281 (309)
+|.+||.|+
T Consensus 27 li~VSq~D~ 35 (39)
T 3arc_X 27 LIAISQIDK 35 (39)
T ss_dssp HHHHHHHSC
T ss_pred heeEeccCc
Confidence 666676664
Done!