RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 021671
(309 letters)
>gnl|CDD|178006 PLN02380, PLN02380, 1-acyl-sn-glycerol-3-phosphate acyltransferase.
Length = 376
Score = 529 bits (1365), Expect = 0.0
Identities = 217/289 (75%), Positives = 246/289 (85%)
Query: 1 MGKEHALVICNHRSDIDWLVGWVVAQRKGCLGSTLAIIKKEAKHLPFIGWSMWFSEYVFL 60
MGKEHALVI NHRSDIDWLVGW++AQR GCLGS LA++KK +K LP IGWSMWFSEYVFL
Sbjct: 81 MGKEHALVISNHRSDIDWLVGWILAQRSGCLGSALAVMKKSSKFLPVIGWSMWFSEYVFL 140
Query: 61 ERRWNKDEQTLKSGFKRLVDFPMPFWLALYVEGTRFTEAKLLAAQEYALSRGLPIPRNVL 120
ER W KDE TLKSGF+RL DFP PFWLAL+VEGTRFT+AKLLAAQEYA SRGLP+PRNVL
Sbjct: 141 ERSWAKDENTLKSGFQRLKDFPRPFWLALFVEGTRFTQAKLLAAQEYAASRGLPVPRNVL 200
Query: 121 IPRTKGFVSAVNNMRSFVPAIYDCTVAVPKSQPPPTMVRMFRGQPSVVNVEIRRHSMEEL 180
IPRTKGFVSAV+NMRSFVPAIYD TVAVPK QP PTM+R+FRGQ SVV+V I+RHSM+EL
Sbjct: 201 IPRTKGFVSAVSNMRSFVPAIYDVTVAVPKGQPAPTMLRIFRGQSSVVHVHIKRHSMKEL 260
Query: 181 PKTADGIAQWCKDVFVTKDALLEKYLSRDTFGLQERQDIGRPKKSLFVVVSWSCLLIFIL 240
P+T DGIAQWCKDVFV KDALL+K+ + DTFG QE QDIGRPKKSL VV+SW+CLLI
Sbjct: 261 PETDDGIAQWCKDVFVAKDALLDKHFAEDTFGDQEYQDIGRPKKSLIVVISWACLLILGA 320
Query: 241 VKLFQWTSILASWAAIAFSAFFLLLVVGVMQILIQSSESEHSTPLKITP 289
+K QW S+L+SW IA A L++V +MQILI+SS+SE STP K
Sbjct: 321 IKFLQWLSLLSSWKGIASLAAGLVIVTILMQILIESSQSERSTPAKAAN 369
>gnl|CDD|153252 cd07990, LPLAT_LCLAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LCLAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
Lysocardiolipin acyltransferase 1 (LCLAT1) or
1-acyl-sn-glycerol-3-phosphate acyltransferase and
similar proteins.
Length = 193
Score = 226 bits (579), Expect = 1e-74
Identities = 81/173 (46%), Positives = 113/173 (65%)
Query: 1 MGKEHALVICNHRSDIDWLVGWVVAQRKGCLGSTLAIIKKEAKHLPFIGWSMWFSEYVFL 60
+ KE AL+I NHRS++DWLV W++A R G LG ++K K+ P GW E++FL
Sbjct: 21 LPKERALIISNHRSEVDWLVLWMLADRFGRLGRLKIVLKDSLKYPPLGGWGWQLGEFIFL 80
Query: 61 ERRWNKDEQTLKSGFKRLVDFPMPFWLALYVEGTRFTEAKLLAAQEYALSRGLPIPRNVL 120
+R+W KDE+T+K KRL D P PFWL ++ EGTRFTE K +QE+A GLP ++VL
Sbjct: 81 KRKWEKDEKTIKRQLKRLKDSPEPFWLLIFPEGTRFTEEKKERSQEFAEKNGLPPLKHVL 140
Query: 121 IPRTKGFVSAVNNMRSFVPAIYDCTVAVPKSQPPPTMVRMFRGQPSVVNVEIR 173
+PRTKGFV+ + +R V A+YD T+A P +PP + G+P V+V +R
Sbjct: 141 LPRTKGFVAILETLRDAVDAVYDVTIAYPDGKPPSEQRLLLGGKPREVHVHVR 193
>gnl|CDD|178126 PLN02510, PLN02510, probable 1-acyl-sn-glycerol-3-phosphate
acyltransferase.
Length = 374
Score = 182 bits (464), Expect = 6e-55
Identities = 87/266 (32%), Positives = 142/266 (53%), Gaps = 6/266 (2%)
Query: 2 GKEHALVICNHRSDIDWLVGWVVAQRKGCLGSTLAIIKKEAKHLPFIGWSMWFSEYVFLE 61
+E L+I NHR+++DW+ W +A RKGCLG ++K LP GW+ E++ +E
Sbjct: 90 PEERVLLIANHRTEVDWMYLWDLALRKGCLGYIKYVLKSSLMKLPVFGWAFHIFEFIPVE 149
Query: 62 RRWNKDEQTLKSGFKRLVDFPMPFWLALYVEGTRFTEAKLLAAQEYALSRGLPIPRNVLI 121
R+W DE ++ D P WLAL+ EGT +TEAK +Q++A GLPI NVL+
Sbjct: 150 RKWEVDEPNIRQMLSSFKDPRDPLWLALFPEGTDYTEAKCQRSQKFAAEHGLPILNNVLL 209
Query: 122 PRTKGFVSAVNNMRSFVPAIYDCTVAVPKSQPPPTMVRMFRGQPSVVNVEIRRHSMEELP 181
P+TKGFVS + +R + A+YD T+ K + P + +F PS V++ IRR ++++P
Sbjct: 210 PKTKGFVSCLQELRCSLDAVYDVTIGY-KHRCPSFLDNVFGIDPSEVHIHIRRIPLKQIP 268
Query: 182 KTADGIAQWCKDVFVTKDALLEKYLSRDTFGLQERQDIGRPKKSL---FVVVSWSCLLIF 238
+ D ++ W D F KD LL + ++ F + + K L V++ + + +
Sbjct: 269 TSEDEVSAWLMDRFQLKDQLLSDFYAQGHFPNEGTEGELSTLKCLANFLAVIALTTVFTY 328
Query: 239 ILVKLFQWTSILASWAA--IAFSAFF 262
+ + W I S + + + F
Sbjct: 329 LTLFSSVWFKIYVSLSCAYLTSATHF 354
>gnl|CDD|214724 smart00563, PlsC, Phosphate acyltransferases. Function in
phospholipid biosynthesis and have either
glycerolphosphate, 1-acylglycerolphosphate, or
2-acylglycerolphosphoethanolamine acyltransferase
activities. Tafazzin, the product of the gene mutated in
patients with Barth syndrome, is a member of this
family.
Length = 118
Score = 82.8 bits (205), Expect = 7e-20
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 7/123 (5%)
Query: 6 ALVICNHRSDIDWLVGWVVAQRKGCLGSTLAIIKKEAKHLPFIGWSMWFSEYVFLERRWN 65
ALV+ NH+S +D LV + RK +A KKE ++P +GW + +F++R
Sbjct: 1 ALVVANHQSFLDPLVLSALLPRKLGRVRFVA--KKELFYVPLLGWLLRLLGAIFIDRSNG 58
Query: 66 -KDEQTLKSGFKRLVDFPMPFWLALYVEGTRFTEAKLLAAQEYALSRGLPIPRNVLIPRT 124
K L+ + L + WL ++ EGTR KLL ++ A L ++P
Sbjct: 59 RKARAALREAVELLKE---GEWLLIFPEGTRSRPGKLLPFKKGAARLALE-AGVPIVPVA 114
Query: 125 KGF 127
Sbjct: 115 IRG 117
>gnl|CDD|223282 COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase
[Lipid metabolism].
Length = 255
Score = 64.9 bits (158), Expect = 3e-12
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 6 ALVICNHRSDIDWLVGWVVAQRKGCLGSTLAIIKKEAKHLPFIGWSMWFSEYVFLERRWN 65
ALV+ NH+S +D L+ + R+G + KKE +P +GW + + ++R N
Sbjct: 66 ALVVANHQSFLDPLLLSLALPRRG---PVRFVAKKELFKVPLLGWLLRLLGAIPVDRE-N 121
Query: 66 KDEQTLKSGFKRLVDFPMPFWLALYVEGTRFTEAKLLAAQE-----YALSRGLPI 115
D++TL++ RL L ++ EGTR + L + AL G+PI
Sbjct: 122 PDDETLRAAVARLKAGGR--SLVIFPEGTRSRGGEELLPFKRGAARLALEAGVPI 174
>gnl|CDD|237584 PRK14014, PRK14014, putative acyltransferase; Provisional.
Length = 301
Score = 63.7 bits (156), Expect = 1e-11
Identities = 61/231 (26%), Positives = 96/231 (41%), Gaps = 53/231 (22%)
Query: 7 LVICNHRSDIDWLVGWVVAQRKGCLGSTLAI------IKKEAKHLPFIGWSMWFSEYVFL 60
LVI NH+S +D LV V R+ I +K+E +PF+G + W ++ F+
Sbjct: 90 LVISNHQSWVDILVLQYVFNRR--------IPMLKFFLKQELIWVPFLGLAWWALDFPFM 141
Query: 61 ER-----------RWNKD-EQTLKS--GFKRLVDFPMPFWLALYVEGTRFTEAKLLAAQ- 105
+R KD E T ++ FKR MP + +VEGTRFT K Q
Sbjct: 142 KRYSKAYLAKNPELKGKDLETTRRACEKFKR-----MPTTIVNFVEGTRFTPEKHQQQQS 196
Query: 106 EYALSRGLPIPRNVLIPRTKGFVSAVNNMRSFVPAIYDCTVAVPKSQPPPTMVRMFRGQP 165
Y +++L P+ G A+N M + D T+ P P+ + G+
Sbjct: 197 PY---------QHLLKPKAGGIAFALNAMGEQFDGLLDVTIVYP--DGRPSFWDLLSGRV 245
Query: 166 SVVNVEIRRHSMEELPKT---AD-----GIAQWCKDVFVTKDALLEKYLSR 208
+ V +R + E D QW ++ KD L+E+ L++
Sbjct: 246 KKIVVHVRLLPIPEELIGDYFNDKEFRRRFQQWLNQLWQEKDQLIEQLLAQ 296
>gnl|CDD|216567 pfam01553, Acyltransferase, Acyltransferase. This family contains
acyltransferases involved in phospholipid biosynthesis
and other proteins of unknown function. This family also
includes tafazzin, the Barth syndrome gene.
Length = 131
Score = 60.4 bits (147), Expect = 2e-11
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 6 ALVICNHRSDIDWLVGWVVAQRKGCLGSTLAIIKKEAKHLPFIGWSMWFSEYVFLERRWN 65
A+V+ NH+S +D L+ ++ ++G +A K E +LP +GW M +F++R+
Sbjct: 16 AIVVANHQSYLDPLLLSLLLPKRGRPLVFVA--KDELLNLPLLGWLMRLLGCIFIDRKNA 73
Query: 66 KDEQTLKSGFKRLVDFPMPFWLALYVEGTRFTEAKLL 102
KD L+ + EGTR +LL
Sbjct: 74 KDAANTLEYLVELLREGELVLIFP--EGTRSRGGELL 108
>gnl|CDD|153251 cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
AGPAT-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), Tafazzin (product of Barth syndrome gene), and
similar proteins.
Length = 184
Score = 50.7 bits (122), Expect = 1e-07
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Query: 3 KEHALVICNHRSDIDWLVGWVVAQRKGCLGSTLAIIKKEAKHLPFIGWSMWFSEYVFLER 62
K +++ NH+S +D LV R + KKE +PF+GW + + ++R
Sbjct: 23 KGPVIIVANHQSYLDPLVLGAALPRPIR-----FVAKKELFKIPFLGWLLRLLGAIPIDR 77
Query: 63 -RWNKDEQTLKSGFKRLVDFPMPFWLALYVEGTRFTEAKLL 102
+ L+ + L + + ++ EGTR + +LL
Sbjct: 78 GNGRSAREALREAIEALKE---GESVVIFPEGTRSRDGELL 115
>gnl|CDD|129621 TIGR00530, AGP_acyltrn, 1-acyl-sn-glycerol-3-phosphate
acyltransferases. This model describes the core
homologous region of a collection of related proteins,
several of which are known to act as
1-acyl-sn-glycerol-3-phosphate acyltransferases (EC
2.3.1.51). Proteins scoring above the trusted cutoff are
likely to have the same general activity. However, there
is variation among characterized members as to whether
the acyl group can be donated by acyl carrier protein or
coenzyme A, and in the length and saturation of the
donated acyl group. 1-acyl-sn-glycerol-3-phosphate
acyltransferase is also called 1-AGP acyltransferase,
lysophosphatidic acid acyltransferase, and LPA
acyltransferase [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 130
Score = 42.3 bits (100), Expect = 3e-05
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 11/117 (9%)
Query: 3 KEHALVICNHRSDIDWLVGWVVAQRKGCLGSTLAIIKKEAKHLPFIGWSMWFSEYVFLER 62
K LV+ NH+S++D L I KKE K +PF G +W + +F++R
Sbjct: 15 KSPVLVVANHQSNLDPLTLSAAFPPPIVF-----IAKKELKWIPFFGIMLWLTGAIFIDR 69
Query: 63 RWNKDEQTLKSGFKRLVDFPMPFWLALYVEGTRFTEAKLL----AAQEYALSRGLPI 115
+ T ++ ++ EGTR +L A A+ G+PI
Sbjct: 70 ENIRAIATALKAAIEVLKQGRSIG--VFPEGTRSRGRDILPFKKGAFHIAIKAGVPI 124
>gnl|CDD|153244 cd06551, LPLAT, Lysophospholipid acyltransferases (LPLATs) of
glycerophospholipid biosynthesis. Lysophospholipid
acyltransferase (LPLAT) superfamily members are
acyltransferases of de novo and remodeling pathways of
glycerophospholipid biosynthesis. These proteins
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
superfamily are LPLATs such as glycerol-3-phosphate
1-acyltransferase (GPAT, PlsB),
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), lysophosphatidylcholine acyltransferase 1
(LPCAT-1), lysophosphatidylethanolamine acyltransferase
(LPEAT, also known as, MBOAT2, membrane-bound
O-acyltransferase domain-containing protein 2), lipid A
biosynthesis lauroyl/myristoyl acyltransferase,
2-acylglycerol O-acyltransferase (MGAT),
dihydroxyacetone phosphate acyltransferase (DHAPAT, also
known as 1 glycerol-3-phosphate O-acyltransferase 1) and
Tafazzin (the protein product of the Barth syndrome
(TAZ) gene).
Length = 187
Score = 35.1 bits (81), Expect = 0.020
Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 11/92 (11%)
Query: 7 LVICNHRSDIDWLVGWVVAQRKGCLGSTLAIIKKEA--KHLPFIGWSMWFSEYVFLERRW 64
L + NH S D L+ +++ +R L + + E + PF ++R
Sbjct: 29 LFVSNHSSWWDGLILFLLLERG--LRRDVYGLMDEELLERYPFFTR----LGAFSVDRDS 82
Query: 65 NK-DEQTLKSGFKRLVDFPMPFWLALYVEGTR 95
+ ++LK + L W+ EGTR
Sbjct: 83 PRSAAKSLKYVARLLSKPGSVVWIFP--EGTR 112
>gnl|CDD|212095 cd00451, GH38N_AMII_euk, N-terminal catalytic domain of
eukaryotic class II alpha-mannosidases; glycoside
hydrolase family 38 (GH38). The family corresponds to
a group of eukaryotic class II alpha-mannosidases
(AlphaMII), which contain Golgi alpha-mannosidases II
(GMII), the major broad specificity lysosomal
alpha-mannosidases (LAM, MAN2B1), the noval
core-specific lysosomal alpha 1,6-mannosidases (Epman,
MAN2B2), and similar proteins. GMII catalyzes the
hydrolysis of the terminal both alpha-1,3-linked and
alpha-1,6-linked mannoses from the high-mannose
oligosaccharide GlcNAc(Man)5(GlcNAc)2 to yield
GlcNAc(Man)3(GlcNAc)2 (GlcNAc, N-acetylglucosmine),
which is the committed step of complex N-glycan
synthesis. LAM is a broad specificity exoglycosidase
hydrolyzing all known alpha 1,2-, alpha 1,3-, and alpha
1,6-mannosidic linkages from numerous high mannose type
oligosaccharides. Different from LAM, Epman can
efficiently cleave only the alpha 1,6-linked mannose
residue from (Man)3GlcNAc, but not (Man)3(GlcNAc)2 or
other larger high mannose oligosaccharides, in the core
of N-linked glycans. Members in this family are
retaining glycosyl hydrolases of family GH38 that
employs a two-step mechanism involving the formation of
a covalent glycosyl enzyme complex. Two carboxylic
acids positioned within the active site act in concert:
one as a catalytic nucleophile and the other as a
general acid/base catalyst.
Length = 258
Score = 31.4 bits (72), Expect = 0.46
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 54 FSEYVFLERRWNKDEQTLKSGFKRLVD 80
++E FLER W K FK+LV
Sbjct: 48 WAEIGFLERWWEDQGNDTKQQFKKLVK 74
>gnl|CDD|218853 pfam06011, TRP, Transient receptor potential (TRP) ion channel.
This family of proteins are transient receptor potential
(TRP) ion channels. They are essential for cellular
viability and are involved in cell growth and cell wall
synthesis. The genes for these proteins are homologous
to polycystic kidney disease related ion channel genes.
Length = 531
Score = 31.0 bits (71), Expect = 0.73
Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 234 CLLIFILVKLFQWTSILASWAAIAFSAFFLLLVVGVM 270
+++ L+Q+T S AA+ + FL L++G++
Sbjct: 310 FFPPIVVLSLWQFT-QADSAAAVVLAVVFLALLLGLL 345
>gnl|CDD|215333 PLN02618, PLN02618, tryptophan synthase, beta chain.
Length = 410
Score = 30.1 bits (68), Expect = 1.5
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 145 TVAVPKSQPPPTMVRMFRGQPSVVNVEIRRHSME 178
+VA P P P MVR F SV+ E RR +ME
Sbjct: 206 SVAGP--HPYPMMVRDFH---SVIGKETRRQAME 234
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic
compound extrusion (MATE)-like proteins similar to
Streptococcus aureus MepA. The integral membrane
proteins from the MATE family are involved in exporting
metabolites across the cell membrane and are responsible
for multidrug resistance (MDR) in many bacteria and
animals. This subfamily includes Streptococcus aureus
MepA and Vibrio vulnificus VmrA and functions most
likely as a multidrug efflux pump.
Length = 426
Score = 29.8 bits (68), Expect = 2.0
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 217 QDIGRPKKSLFVVVSWSCL----LIFILVKLFQWTSILASWAAIAFSAFFLLLVVGVM 270
Q IG+ K++ + + L L+ IL +LF I W A + LL+ ++
Sbjct: 370 QAIGKAKRAALLSLLRQGLFLIPLLLILPRLFGLDGI---WLAFPLAEILTLLLALIL 424
>gnl|CDD|153253 cd07991, LPLAT_LPCAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LPCAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins
(acylACPs) into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
lysophosphatidylcholine acyltransferase 1 (LPCAT-1),
glycerol-3-phosphate acyltransferase 3 (GPAT3), and
similar sequences.
Length = 211
Score = 29.1 bits (66), Expect = 2.4
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 7 LVICNHRSDIDWLVGWVVAQRKGCLGSTLAII-KKEAKHLPFIGWSMWFSEYVFLERRWN 65
+++ NH S ID L+ + +I+ KKE LPFIG + +F++R
Sbjct: 27 IIVANHTSFIDPLI---LFSDLFP-----SIVAKKELGKLPFIGTILRALGCIFVDRSEP 78
Query: 66 KDEQ 69
KD +
Sbjct: 79 KDRK 82
>gnl|CDD|215079 PLN00151, PLN00151, potassium transporter; Provisional.
Length = 852
Score = 29.7 bits (67), Expect = 2.6
Identities = 11/46 (23%), Positives = 28/46 (60%), Gaps = 7/46 (15%)
Query: 225 SLFVVVSWSCLLIFILVKLFQWTSILA-----SWAAIAFSAFFLLL 265
++F+V+ + ++F+ V+L ++S+L+ W + F++ FL +
Sbjct: 525 NIFLVLCF--PVVFLSVELVFFSSVLSSVGDGGWIPLVFASVFLCI 568
>gnl|CDD|215488 PLN02901, PLN02901, 1-acyl-sn-glycerol-3-phosphate acyltransferase.
Length = 214
Score = 28.9 bits (65), Expect = 2.8
Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 35/126 (27%)
Query: 2 GKEH-------ALVICNHRS--DIDWLVGWVVAQRKGCLGSTLAIIKKEAKHL-PFIGWS 51
G E+ A+ + NH+S DI L LG I K + L P IGW+
Sbjct: 41 GLENLPSPDEPAVYVSNHQSFLDIYTLFH---------LGRPFKFISKTSIFLIPIIGWA 91
Query: 52 MWFSEYVFLERRWNKDE-QTLKSGFKRLVD------FPMPFWLALYVEGTRFTEAKLLAA 104
M+ + ++ L+R + + + LK + L FP EGTR + KL A
Sbjct: 92 MYMTGHIPLKRMDRRSQLECLKRCMELLKKGASVFFFP---------EGTRSKDGKLAAF 142
Query: 105 QEYALS 110
++ A S
Sbjct: 143 KKGAFS 148
>gnl|CDD|184979 PRK15018, PRK15018, 1-acyl-sn-glycerol-3-phosphate acyltransferase;
Provisional.
Length = 245
Score = 28.8 bits (64), Expect = 3.2
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 12/116 (10%)
Query: 5 HALVICNHRSDIDWLVGWVVAQRKGCLGSTLAIIKKEAKHLPFIGWSMWFSEYVFLER-R 63
+A+ I NH+++ D + + Q T+ + KK +PF G W + + ++R
Sbjct: 66 NAIYIANHQNNYDMVTASNIVQP-----PTVTVGKKSLLWIPFFGQLYWLTGNLLIDRNN 120
Query: 64 WNKDEQTLKSGFKRLVDFPMPFWLALYVEGTRFTEAKLL----AAQEYALSRGLPI 115
K T+ + W ++ EGTR LL A A++ G+PI
Sbjct: 121 RTKAHGTIAEVVNHFKKRRISIW--MFPEGTRSRGRGLLPFKTGAFHAAIAAGVPI 174
>gnl|CDD|182188 PRK09997, PRK09997, hydroxypyruvate isomerase; Provisional.
Length = 258
Score = 28.8 bits (64), Expect = 3.6
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 51 SMWFSEYVFLERRWNKDEQTLKSGFKRLVDFPMPF 85
SM F EY FL R E+ + GF R V+F P+
Sbjct: 9 SMLFGEYDFLARF----EKAAQCGF-RGVEFMFPY 38
>gnl|CDD|235767 PRK06277, PRK06277, hydrogenase subunit F; Validated.
Length = 478
Score = 28.8 bits (65), Expect = 3.9
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 225 SLFVVVSWSCLLIFILVKLFQWTSILAS--WAAIAFSAFFLLLVVGVMQILIQS 276
S FV+V+ L+ ++ KLF S S IA S L +V GV+ L+Q+
Sbjct: 241 SKFVLVA----LMLVIFKLFGGLSYFPSAQGVLIALS--VLAMVFGVVMALLQT 288
>gnl|CDD|183851 PRK13028, PRK13028, tryptophan synthase subunit beta; Provisional.
Length = 402
Score = 28.7 bits (65), Expect = 4.0
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
Query: 153 PPPTMVRMFRGQPSVVNVEIRRHSME---ELP 181
P P MVR F+ SV+ E R +E LP
Sbjct: 203 PFPMMVRDFQ---SVIGEEAREQFLEMTGRLP 231
>gnl|CDD|217633 pfam03600, CitMHS, Citrate transporter.
Length = 377
Score = 28.8 bits (65), Expect = 4.2
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 186 GIAQWCKDVFVTKDALLEKYLSRDTFGLQERQDIGRPKKSLFVVVSWSCL-LIFILVKLF 244
A + + E L RDT E + R + L WS L L+ +L+ +
Sbjct: 187 LGAYYLGKKERKRLGEGELELERDTLEELEAEYEIRKRPLLS----WSNLALVLVLMLVL 242
Query: 245 QWTSILASWAAIAFSAFFLLLVV 267
+ W A+ L L++
Sbjct: 243 LLLGLWPGWVAL-LIGILLALLI 264
>gnl|CDD|171438 PRK12363, PRK12363, phosphoglycerol transferase I; Provisional.
Length = 703
Score = 28.7 bits (64), Expect = 4.3
Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 222 PKKSLFVVVSWSCLLIFILVKLFQWTSILASWAAIAFSAFFLLLVVGVMQ 271
++F+ + L ++ ++ A F+ F +LVV + Q
Sbjct: 73 GYIAVFIGMILLSLSPLFAFRVRRFRRPRGGGA--LFAGFVFMLVVTIAQ 120
>gnl|CDD|216251 pfam01027, Bax1-I, Inhibitor of apoptosis-promoting Bax1.
Programmed cell-death involves a set of Bcl-2 family
proteins, some of which inhibit apoptosis (Bcl-2 and
Bcl-XL) and some of which promote it (Bax and Bak).
Human Bax inhibitor, BI-1, is an evolutionarily
conserved integral membrane protein containing multiple
membrane-spanning segments predominantly localised to
intracellular membranes. It has 6-7 membrane-spanning
domains. The C termini of the mammalian BI-1 proteins
are comprised of basic amino acids resembling some
nuclear targeting sequences, but otherwise the predicted
proteins lack motifs that suggest a function. As plant
BI-1 appears to localise predominantly to the ER, we
hypothesized that plant BI-1 could also regulate cell
death triggered by ER stress. BI-1 appears to exert its
effect through an interaction with calmodulin.
Length = 205
Score = 27.9 bits (63), Expect = 4.8
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 232 WSCLLIFILVKLFQWTSI--LASWAAIAFSAFFLLLVVGVMQILIQSS 277
IF + L+ T+ L+ F+ L+V ++ I + SS
Sbjct: 101 LGTAAIFGGLSLYALTTKRDLSFLGGFLFAGLIGLIVASLVNIFLPSS 148
>gnl|CDD|237448 PRK13614, PRK13614, lipoprotein LpqB; Provisional.
Length = 573
Score = 28.7 bits (64), Expect = 4.9
Identities = 18/62 (29%), Positives = 21/62 (33%), Gaps = 12/62 (19%)
Query: 124 TKGFVSAVNNMRSFVP-----AIYDCTVAVPKSQPPPTMVRM-------FRGQPSVVNVE 171
F S + R VP A D + RM R QP VVNVE
Sbjct: 226 ASAFPSGIKLARESVPVVSGTATVDLSAKELDEASAEDRQRMQQQLQLTLRAQPDVVNVE 285
Query: 172 IR 173
+R
Sbjct: 286 LR 287
>gnl|CDD|233183 TIGR00916, 2A0604s01, protein-export membrane protein, SecD/SecF
family. The SecA,SecB,SecD,SecE,SecF,SecG and SecY
proteins form the protein translocation appartus in
prokaryotes. This family is specific for the SecD and
SecF proteins [Protein fate, Protein and peptide
secretion and trafficking].
Length = 192
Score = 28.0 bits (63), Expect = 5.4
Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 223 KKSLFVVVSWSCLLIFILVKL-FQWTSILASWAAIAFSAFFLLLVVGVMQI 272
K + ++ +L+ + + L ++W +A+ AA+ +L V+ +
Sbjct: 47 KAGIIALL-IGLVLVLLYMLLRYEWRGAIAAIAALVHDVILILGVLSLFGA 96
>gnl|CDD|178320 PLN02718, PLN02718, Probable galacturonosyltransferase.
Length = 603
Score = 28.3 bits (63), Expect = 6.2
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 41 EAKHLPFIGWSMWFSEYVFLERRWNKDEQTLKSGFKR 77
+A LP IGW ++++ V L++RW+ +SG
Sbjct: 520 KAGSLP-IGWLTFYNQTVALDKRWHVLGLGHESGVGA 555
>gnl|CDD|214805 smart00756, VKc, Family of likely enzymes that includes the
catalytic subunit of vitamin K epoxide reductase.
Bacterial homologues are fused to members of the
thioredoxin family of oxidoreductases.
Length = 142
Score = 27.3 bits (61), Expect = 6.6
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 227 FVVVSWSCLLIFILVKLFQWTSILASW---AAIAFSAFFLLLVVGVMQIL 273
++VV +L + V L +WT L A FS + + L+V V++ L
Sbjct: 71 YLVVLALAVLGLLGVTLPRWTWRLLFLGSLAGAVFSVYLIYLLVFVIKAL 120
>gnl|CDD|177110 MTH00035, ATP6, ATP synthase F0 subunit 6; Validated.
Length = 229
Score = 27.6 bits (62), Expect = 6.9
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 230 VSWSCLLIFILVKLFQWTSI-LASWAAIAFSAFFLLLVVGVMQIL 273
W IL +FQ T+ A WA + + F L+L + V+ +
Sbjct: 48 SIWLTFRQEILKLIFQNTNPNTAPWAGLLTTVFILILSINVLGLF 92
>gnl|CDD|238227 cd00386, Heme_Cu_Oxidase_III_like, Heme-copper oxidase subunit III.
Heme-copper oxidases are transmembrane protein
complexes in the respiratory chains of prokaryotes and
mitochondria which couple the reduction of molecular
oxygen to water to, proton pumping across the membrane.
The heme-copper oxidase superfamily is diverse in terms
of electron donors, subunit composition, and heme types.
This superfamily includes cytochrome c and ubiquinol
oxidases. Bacterial oxidases typically contain 3 or 4
subunits in contrast to the 13 subunit bovine cytochrome
c oxidase (CcO). Subunits I, II, and III of mammalian
CcO are encoded within the mitochondrial genome and the
remaining 10 subunits are encoded within the nuclear
genome. Subunits I, II and III of ubiquinol oxidase are
homologous to the corresponding subunits in CcO. This
group additionally contains proteins which are fusions
between subunits I and III, such as Sulfolobus
acidocaldarius SoxM, a subunit of the SoxM terminal
oxidase complex. It also includes NorE which has been
speculated to be a subunit of nitric oxide reductase.
Some archaebacterial cytochrome oxidases lack subunit
III. Although not required for catalytic activity,
subunit III is believed to play a role in assembly of
the multimer complex. Rhodobacter CcO subunit III
stabilizes the integrity of the binuclear center in
subunit I. It has been proposed that archaea acquired
heme-copper oxidases through gene transfer from
gram-positive bacteria.
Length = 183
Score = 27.6 bits (62), Expect = 6.9
Identities = 7/30 (23%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 236 LIFILVKLFQWTSILASWAA-IAFSAFFLL 264
L F+ ++ ++++ ++ + + + S FFLL
Sbjct: 95 LAFLGLQAYEYSHLIFTISDSVFGSTFFLL 124
>gnl|CDD|235449 PRK05415, PRK05415, hypothetical protein; Provisional.
Length = 341
Score = 27.9 bits (63), Expect = 7.3
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 11/60 (18%)
Query: 221 RPKKSLFVVVSWSCLLIFI----------LVKLFQWTSILASWAAIAFSAFFLLLVVGVM 270
RPK+SL+ + W L + L FQ + L A A +L +G++
Sbjct: 60 RPKRSLWRKLLWGGLGLLGSLVVGQAVQWLRDAFQRSDWLG-LGAAVVGALIVLAGLGIV 118
>gnl|CDD|220281 pfam09531, Ndc1_Nup, Nucleoporin protein Ndc1-Nup. Ndc1 is a
nucleoporin protein that is a component of the Nuclear
Pore Complex, and, in fungi, also of the Spindle Pole
Body. It consists of six transmembrane segments, three
lumenal loops, both concentrated at the N-terminus and
cytoplasmic domains largely at the C-terminus, all of
which are well conserved.
Length = 557
Score = 28.1 bits (63), Expect = 7.5
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 226 LFVVVSWSCLLIFILVKLFQWTSILASWAAIA---FSAFFLLLVVGVMQIL 273
L +++S+ LL+F+L+ W+S S + L L + ++ IL
Sbjct: 14 LLLLLSYLLLLVFLLLSNISWSSGSWSLFPSGYTGIRSLLLFLALLLIGIL 64
>gnl|CDD|212120 cd10809, GH38N_AMII_GMII_SfManIII_like, N-terminal catalytic
domain of Golgi alpha-mannosidase II, Spodoptera
frugiperda Sf9 alpha-mannosidase III, and similar
proteins; glycoside hydrolase family 38 (GH38). This
subfamily is represented by Golgi alpha-mannosidase II
(GMII, also known as mannosyl-oligosaccharide 1,3-
1,6-alpha mannosidase, EC 3.2.1.114, Man2A1), a
monomeric, membrane-anchored class II alpha-mannosidase
existing in the Golgi apparatus of eukaryotes. GMII
plays a key role in the N-glycosylation pathway. It
catalyzes the hydrolysis of the terminal both
alpha-1,3-linked and alpha-1,6-linked mannoses from the
high-mannose oligosaccharide GlcNAc(Man)5(GlcNAc)2 to
yield GlcNAc(Man)3(GlcNAc)2(GlcNAc,
N-acetylglucosmine), which is the committed step of
complex N-glycan synthesis. GMII is activated by zinc
or cobalt ions and is strongly inhibited by
swainsonine. Inhibition of GMII provides a route to
block cancer-induced changes in cell surface
oligosaccharide structures. GMII has a pH optimum of
5.5-6.0, which is intermediate between those of acidic
(lysosomal alpha-mannosidase) and neutral (ER/cytosolic
alpha-mannosidase) enzymes. GMII is a retaining
glycosyl hydrolase of family GH38 that employs a
two-step mechanism involving the formation of a
covalent glycosyl enzyme complex; two carboxylic acids
positioned within the active site act in concert: one
as a catalytic nucleophile and the other as a general
acid/base catalyst. This subfamily also includes human
alpha-mannosidase 2x (MX, also known as
mannosyl-oligosaccharide 1,3- 1,6-alpha mannosidase, EC
3.2.1.114, Man2A2). MX is enzymatically and
functionally very similar to GMII, and is thought to
also function in the N-glycosylation pathway. Also
found in this subfamily is class II alpha-mannosidase
encoded by Spodoptera frugiperda Sf9 cell. This
alpha-mannosidase is an integral membrane glycoprotein
localized in the Golgi apparatus. It shows high
sequence homology with mammalian Golgi
alpha-mannosidase II(GMII). It can hydrolyze
p-nitrophenyl alpha-D-mannopyranoside (pNP-alpha-Man),
and it is inhibited by swainsonine. However, the Sf9
enzyme is stimulated by cobalt and can hydrolyze
(Man)5(GlcNAc)2 to (Man)3(GlcNAc)2, but it cannot
hydrolyze GlcNAc(Man)5(GlcNAc)2, which is distinct from
that of GMII. Thus, this enzyme has been designated as
Sf9 alpha-mannosidase III (SfManIII). It probably
functions in an alternate N-glycan processing pathway
in Sf9 cells.
Length = 340
Score = 28.0 bits (63), Expect = 7.5
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 52 MWFSEYVFLERRWNKDEQTLKSGFKRLVD 80
+W +E FLER W+ K K+LV
Sbjct: 48 IW-AEISFLERWWDDASPDKKEAVKKLVK 75
>gnl|CDD|217193 pfam02705, K_trans, K+ potassium transporter. This is a family of
K+ potassium transporters that are conserved across
phyla, having both bacterial (KUP), yeast (HAK), and
plant (AtKT) sequences as members.
Length = 534
Score = 27.8 bits (63), Expect = 8.3
Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 233 SCLLIFILVKLFQWTSILASWAAIAFSAFFLLL 265
+ LL + ++++W A+ F FFL++
Sbjct: 369 TILLFLVARRVWRW----PLILALLFLLFFLVI 397
>gnl|CDD|237224 PRK12842, PRK12842, putative succinate dehydrogenase; Reviewed.
Length = 574
Score = 27.7 bits (62), Expect = 8.4
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 87 LALYVEGTRFTEAKLLAAQ--EYALSRGLPI 115
LALY GT+ T LAA+ + AL G+PI
Sbjct: 201 LALYRRGTQVTSGNALAARLAKSALDLGIPI 231
>gnl|CDD|233430 TIGR01477, RIFIN, variant surface antigen, rifin family. This
model represents the rifin branch of the rifin/stevor
family (pfam02009) of predicted variant surface antigens
as found in Plasmodium falciparum. This model is based
on a set of rifin sequences kindly provided by Matt
Berriman from the Sanger Center. This is a global model
and assesses a penalty for incomplete sequence.
Additional fragmentary sequences may be found with the
fragment model and a cutoff of 20 bits.
Length = 353
Score = 27.4 bits (61), Expect = 9.4
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 7/40 (17%)
Query: 261 FFLLLVVGVMQILIQSSESEHSTPLKITPHQDPT-TERLL 299
F L L IL+ S + +TP T + PT T R L
Sbjct: 11 FSLPL-----NILVNSQRNHKNTP-HHTSNTTPTKTSRSL 44
>gnl|CDD|236168 PRK08156, PRK08156, type III secretion system protein SpaS;
Validated.
Length = 361
Score = 27.7 bits (62), Expect = 9.7
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
Query: 82 PMPFWLALYVEGTRFTEAKLLAAQEYALSRGLPIPRNVLIPR 123
P+PF +++ R T + LA + YA G+P+ R++ + R
Sbjct: 273 PIPF-ISV-----RETNQRALAVRAYAEKVGVPVVRDIKLAR 308
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.137 0.428
Gapped
Lambda K H
0.267 0.0718 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,100,990
Number of extensions: 1568346
Number of successful extensions: 2355
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2330
Number of HSP's successfully gapped: 97
Length of query: 309
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 212
Effective length of database: 6,635,264
Effective search space: 1406675968
Effective search space used: 1406675968
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.5 bits)