Query 021673
Match_columns 309
No_of_seqs 275 out of 1734
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 07:36:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021673.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021673hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 3.4E-18 1.2E-22 131.8 7.2 77 224-308 12-88 (91)
2 1x4j_A Ring finger protein 38; 99.7 4.7E-18 1.6E-22 126.0 3.5 68 232-308 4-71 (75)
3 2ep4_A Ring finger protein 24; 99.6 6.7E-16 2.3E-20 113.9 6.0 53 256-308 11-63 (74)
4 2kiz_A E3 ubiquitin-protein li 99.6 8.2E-16 2.8E-20 111.9 6.1 53 256-308 10-62 (69)
5 1iym_A EL5; ring-H2 finger, ub 99.6 4.4E-16 1.5E-20 108.2 4.1 51 258-308 3-54 (55)
6 2ect_A Ring finger protein 126 99.6 1.1E-15 3.9E-20 113.8 5.2 54 255-308 10-63 (78)
7 2ecl_A Ring-box protein 2; RNF 99.5 3.9E-15 1.3E-19 112.2 4.8 50 259-308 14-75 (81)
8 2ecm_A Ring finger and CHY zin 99.5 9.6E-15 3.3E-19 101.3 4.7 51 258-308 3-54 (55)
9 2ea6_A Ring finger protein 4; 99.5 1.3E-14 4.5E-19 105.0 5.1 54 256-309 11-68 (69)
10 3ng2_A RNF4, snurf, ring finge 99.5 1.7E-14 5.7E-19 105.2 4.0 52 257-308 7-62 (71)
11 3dpl_R Ring-box protein 1; ubi 99.5 3E-14 1E-18 113.0 5.0 50 258-307 35-99 (106)
12 1v87_A Deltex protein 2; ring- 99.5 4E-14 1.4E-18 112.9 5.1 50 259-308 24-93 (114)
13 2d8s_A Cellular modulator of i 99.5 4E-14 1.4E-18 106.6 4.7 51 257-308 12-69 (80)
14 2xeu_A Ring finger protein 4; 99.4 3.4E-14 1.1E-18 101.3 3.8 50 259-308 2-55 (64)
15 2d8t_A Dactylidin, ring finger 99.4 5.6E-14 1.9E-18 102.8 4.3 50 256-308 11-60 (71)
16 2djb_A Polycomb group ring fin 99.4 2.3E-13 7.8E-18 99.8 5.9 50 256-308 11-61 (72)
17 2ecn_A Ring finger protein 141 99.4 9.2E-14 3.1E-18 101.2 3.3 48 257-308 12-59 (70)
18 1chc_A Equine herpes virus-1 r 99.4 1.7E-13 5.7E-18 99.2 4.5 49 258-308 3-51 (68)
19 2csy_A Zinc finger protein 183 99.4 3.9E-13 1.3E-17 100.8 5.4 50 256-308 11-60 (81)
20 2ct2_A Tripartite motif protei 99.4 5.6E-13 1.9E-17 101.0 6.1 53 256-308 11-67 (88)
21 2yur_A Retinoblastoma-binding 99.3 7.8E-13 2.7E-17 97.6 5.3 49 256-307 11-62 (74)
22 2ecy_A TNF receptor-associated 99.3 6.6E-13 2.3E-17 95.6 4.7 49 257-308 12-61 (66)
23 4a0k_B E3 ubiquitin-protein li 99.3 1.1E-13 3.9E-18 111.3 0.5 49 259-307 47-110 (117)
24 2ysl_A Tripartite motif-contai 99.3 9.3E-13 3.2E-17 96.4 5.2 49 257-308 17-68 (73)
25 4ayc_A E3 ubiquitin-protein li 99.3 7.5E-13 2.6E-17 109.4 3.0 47 259-308 52-98 (138)
26 1t1h_A Gspef-atpub14, armadill 99.3 2.9E-12 9.9E-17 95.1 5.0 49 257-308 5-54 (78)
27 2ecw_A Tripartite motif-contai 99.3 4.1E-12 1.4E-16 95.2 5.9 49 257-308 16-70 (85)
28 2ysj_A Tripartite motif-contai 99.3 5.7E-12 2E-16 89.7 5.8 44 257-303 17-63 (63)
29 4ap4_A E3 ubiquitin ligase RNF 99.3 2.2E-12 7.5E-17 104.6 4.0 51 258-308 5-59 (133)
30 2egp_A Tripartite motif-contai 99.3 9.9E-13 3.4E-17 97.7 1.6 49 257-308 9-64 (79)
31 2ecv_A Tripartite motif-contai 99.3 4.6E-12 1.6E-16 95.0 5.2 49 257-308 16-70 (85)
32 2ct0_A Non-SMC element 1 homol 99.2 5.6E-12 1.9E-16 93.3 4.8 52 255-308 10-63 (74)
33 3lrq_A E3 ubiquitin-protein li 99.2 2.7E-12 9.4E-17 100.2 2.8 48 258-308 20-69 (100)
34 2ecj_A Tripartite motif-contai 99.2 5.5E-12 1.9E-16 88.0 3.9 44 257-303 12-58 (58)
35 2y43_A E3 ubiquitin-protein li 99.2 4.7E-12 1.6E-16 98.4 3.1 48 258-308 20-68 (99)
36 1g25_A CDK-activating kinase a 99.2 8.7E-12 3E-16 89.4 4.2 50 259-308 2-54 (65)
37 3ztg_A E3 ubiquitin-protein li 99.2 1.4E-11 4.9E-16 94.2 5.2 49 256-307 9-60 (92)
38 2ckl_A Polycomb group ring fin 99.2 9.7E-12 3.3E-16 98.2 3.9 48 258-308 13-61 (108)
39 4ap4_A E3 ubiquitin ligase RNF 99.2 1.2E-11 4E-16 100.2 4.2 51 258-308 70-124 (133)
40 3fl2_A E3 ubiquitin-protein li 99.2 1.2E-11 4E-16 100.1 3.4 48 258-308 50-98 (124)
41 2ckl_B Ubiquitin ligase protei 99.1 3E-11 1E-15 102.5 5.1 78 226-307 22-100 (165)
42 1jm7_A BRCA1, breast cancer ty 99.1 2.3E-11 7.9E-16 96.2 2.5 47 259-308 20-69 (112)
43 3hct_A TNF receptor-associated 99.1 4.9E-11 1.7E-15 95.7 3.3 49 257-308 15-64 (118)
44 3l11_A E3 ubiquitin-protein li 99.1 1.5E-11 5.3E-16 98.1 0.3 48 257-307 12-60 (115)
45 1z6u_A NP95-like ring finger p 99.0 6.6E-11 2.3E-15 99.2 3.4 47 259-308 77-124 (150)
46 1rmd_A RAG1; V(D)J recombinati 99.0 6.7E-11 2.3E-15 94.4 2.9 48 258-308 21-69 (116)
47 2vje_A E3 ubiquitin-protein li 99.0 6.9E-11 2.3E-15 84.9 2.7 48 258-308 6-56 (64)
48 2kr4_A Ubiquitin conjugation f 99.0 2.4E-10 8.3E-15 86.6 5.4 49 257-308 11-59 (85)
49 1e4u_A Transcriptional repress 99.0 2.4E-10 8.1E-15 85.4 4.2 51 257-308 8-61 (78)
50 1bor_A Transcription factor PM 99.0 8.1E-11 2.8E-15 82.1 1.1 45 258-308 4-48 (56)
51 2vje_B MDM4 protein; proto-onc 99.0 1.7E-10 5.7E-15 82.6 2.5 48 258-308 5-55 (63)
52 2kre_A Ubiquitin conjugation f 99.0 4.2E-10 1.4E-14 88.0 4.9 49 257-308 26-74 (100)
53 1wgm_A Ubiquitin conjugation f 99.0 5.3E-10 1.8E-14 87.1 5.4 49 257-308 19-68 (98)
54 2y1n_A E3 ubiquitin-protein li 98.9 5.1E-10 1.8E-14 106.9 5.1 46 260-308 332-378 (389)
55 3knv_A TNF receptor-associated 98.9 2.8E-10 9.5E-15 94.4 2.1 47 258-307 29-76 (141)
56 1vyx_A ORF K3, K3RING; zinc-bi 98.9 7.6E-10 2.6E-14 78.5 3.9 48 258-308 4-58 (60)
57 4ic3_A E3 ubiquitin-protein li 98.9 2.8E-10 9.7E-15 83.9 0.9 43 259-308 23-66 (74)
58 1jm7_B BARD1, BRCA1-associated 98.9 3.2E-10 1.1E-14 90.8 0.7 46 258-308 20-66 (117)
59 3k1l_B Fancl; UBC, ring, RWD, 98.8 9.3E-10 3.2E-14 102.8 2.6 52 257-308 305-372 (381)
60 2ea5_A Cell growth regulator w 98.8 3.5E-09 1.2E-13 76.8 4.9 48 255-309 10-58 (68)
61 3hcs_A TNF receptor-associated 98.8 3.2E-09 1.1E-13 90.2 3.3 49 257-308 15-64 (170)
62 2yu4_A E3 SUMO-protein ligase 98.7 5E-09 1.7E-13 80.8 3.3 46 258-306 5-59 (94)
63 2c2l_A CHIP, carboxy terminus 98.7 8E-09 2.8E-13 93.6 5.1 50 256-308 204-254 (281)
64 2ecg_A Baculoviral IAP repeat- 98.7 2.8E-09 9.4E-14 78.6 1.1 44 259-309 24-68 (75)
65 1wim_A KIAA0161 protein; ring 98.6 1.4E-08 4.9E-13 77.9 3.5 49 258-306 3-61 (94)
66 2yho_A E3 ubiquitin-protein li 98.6 9.8E-09 3.3E-13 76.7 0.8 43 259-308 17-60 (79)
67 2f42_A STIP1 homology and U-bo 98.5 4.4E-08 1.5E-12 84.2 4.5 50 256-308 102-152 (179)
68 2bay_A PRE-mRNA splicing facto 98.4 1.1E-07 3.7E-12 67.5 2.6 46 260-308 3-49 (61)
69 3t6p_A Baculoviral IAP repeat- 98.4 5.5E-08 1.9E-12 91.9 1.1 44 258-308 293-337 (345)
70 3htk_C E3 SUMO-protein ligase 98.2 5.2E-07 1.8E-11 81.6 4.1 50 257-308 178-231 (267)
71 3vk6_A E3 ubiquitin-protein li 98.1 1.7E-06 6E-11 66.6 3.6 45 262-308 3-48 (101)
72 3nw0_A Non-structural maintena 97.7 2.1E-05 7E-10 70.5 4.6 47 259-308 179-228 (238)
73 2ko5_A Ring finger protein Z; 95.0 0.013 4.5E-07 44.4 2.7 46 258-308 26-72 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 94.6 0.016 5.5E-07 44.1 2.6 35 259-293 2-36 (101)
75 2lri_C Autoimmune regulator; Z 94.1 0.033 1.1E-06 39.6 3.0 46 258-306 10-59 (66)
76 1wil_A KIAA1045 protein; ring 91.9 0.15 5.1E-06 37.8 3.7 33 257-293 12-47 (89)
77 2l5u_A Chromodomain-helicase-D 88.9 0.23 7.8E-06 34.4 2.4 47 257-306 8-58 (61)
78 1f62_A Transcription factor WS 87.2 0.22 7.5E-06 33.0 1.4 45 261-305 1-49 (51)
79 1we9_A PHD finger family prote 87.1 0.18 6.2E-06 35.1 1.0 49 258-306 4-58 (64)
80 2yql_A PHD finger protein 21A; 86.4 0.1 3.5E-06 35.5 -0.6 46 257-305 6-55 (56)
81 2k16_A Transcription initiatio 84.9 0.19 6.4E-06 36.2 0.1 50 258-308 16-70 (75)
82 1mm2_A MI2-beta; PHD, zinc fin 84.4 0.23 7.7E-06 34.5 0.4 47 258-307 7-57 (61)
83 1xwh_A Autoimmune regulator; P 81.6 0.23 7.9E-06 34.9 -0.5 46 258-306 6-55 (66)
84 3m62_A Ubiquitin conjugation f 81.5 1.1 3.8E-05 47.1 4.4 51 255-308 886-937 (968)
85 2ysm_A Myeloid/lymphoid or mix 81.1 0.42 1.4E-05 37.0 0.8 47 258-304 5-55 (111)
86 2e6r_A Jumonji/ARID domain-con 79.9 0.28 9.4E-06 37.0 -0.6 50 256-305 12-65 (92)
87 1fp0_A KAP-1 corepressor; PHD 78.3 0.76 2.6E-05 34.4 1.4 47 256-305 21-71 (88)
88 1wep_A PHF8; structural genomi 77.8 2 6.9E-05 31.0 3.6 49 258-306 9-63 (79)
89 1wem_A Death associated transc 77.2 1.2 4.2E-05 31.9 2.2 47 260-306 15-70 (76)
90 2l43_A N-teminal domain from h 76.9 3.4 0.00012 30.6 4.7 51 256-306 21-75 (88)
91 1weu_A Inhibitor of growth fam 76.9 1.6 5.6E-05 32.7 2.9 42 260-307 35-86 (91)
92 2vpb_A Hpygo1, pygopus homolog 76.5 1.9 6.5E-05 30.2 3.0 49 257-305 5-65 (65)
93 2puy_A PHD finger protein 21A; 75.8 0.4 1.4E-05 33.0 -0.8 46 258-306 3-52 (60)
94 2dj7_A Actin-binding LIM prote 75.0 3.3 0.00011 29.7 4.1 41 258-308 13-53 (80)
95 2kgg_A Histone demethylase jar 74.4 1 3.5E-05 30.0 1.0 43 262-304 4-52 (52)
96 3v43_A Histone acetyltransfera 72.2 0.98 3.4E-05 35.0 0.6 46 260-305 61-111 (112)
97 1weo_A Cellulose synthase, cat 71.6 7.4 0.00025 29.0 5.2 51 258-308 14-69 (93)
98 1wen_A Inhibitor of growth fam 71.3 2.6 8.7E-05 30.0 2.6 42 259-307 15-66 (71)
99 2yt5_A Metal-response element- 69.8 2.5 8.5E-05 29.2 2.3 49 258-306 4-61 (66)
100 3v43_A Histone acetyltransfera 68.9 5.3 0.00018 30.8 4.2 33 259-291 4-42 (112)
101 2cu8_A Cysteine-rich protein 2 67.2 5.1 0.00017 28.1 3.5 40 259-308 8-47 (76)
102 4gne_A Histone-lysine N-methyl 66.5 4.2 0.00014 31.4 3.1 43 258-306 13-62 (107)
103 1wev_A Riken cDNA 1110020M19; 65.8 0.41 1.4E-05 35.7 -2.7 49 258-306 14-72 (88)
104 2lbm_A Transcriptional regulat 65.7 6.2 0.00021 32.0 4.2 46 257-305 60-116 (142)
105 2co8_A NEDD9 interacting prote 65.7 6.7 0.00023 28.1 4.0 41 257-307 12-52 (82)
106 2lv9_A Histone-lysine N-methyl 65.6 2.2 7.6E-05 32.2 1.4 44 261-305 29-75 (98)
107 1iml_A CRIP, cysteine rich int 62.1 3.8 0.00013 28.8 2.0 44 258-305 25-69 (76)
108 3shb_A E3 ubiquitin-protein li 61.4 1.1 3.8E-05 32.6 -1.0 42 262-306 28-77 (77)
109 1x62_A C-terminal LIM domain p 61.1 8 0.00027 27.3 3.7 39 258-307 13-51 (79)
110 1wee_A PHD finger family prote 60.3 1.6 5.5E-05 31.0 -0.3 48 258-306 14-66 (72)
111 2ku3_A Bromodomain-containing 58.5 11 0.00038 26.6 3.9 50 257-306 13-66 (71)
112 2e6s_A E3 ubiquitin-protein li 57.2 2.2 7.4E-05 30.9 -0.0 45 260-305 26-76 (77)
113 2cs3_A Protein C14ORF4, MY039 56.4 23 0.00077 25.9 5.2 38 258-296 13-52 (93)
114 2xb1_A Pygopus homolog 2, B-ce 56.3 6.3 0.00021 30.1 2.5 47 260-306 3-61 (105)
115 2d8y_A Eplin protein; LIM doma 54.3 15 0.00052 26.5 4.3 39 259-307 14-52 (91)
116 3ql9_A Transcriptional regulat 53.9 12 0.00041 29.8 3.8 45 257-305 54-110 (129)
117 1z60_A TFIIH basal transcripti 53.8 5.4 0.00019 27.4 1.5 42 261-303 16-58 (59)
118 3c6w_A P28ING5, inhibitor of g 53.5 2.6 8.8E-05 28.8 -0.2 40 260-305 8-57 (59)
119 2vnf_A ING 4, P29ING4, inhibit 53.1 2.5 8.6E-05 28.9 -0.3 41 259-305 8-58 (60)
120 3o70_A PHD finger protein 13; 53.0 2.7 9.2E-05 29.6 -0.1 47 258-305 17-66 (68)
121 3asl_A E3 ubiquitin-protein li 51.0 2.7 9.4E-05 29.7 -0.4 44 262-306 20-69 (70)
122 1x4l_A Skeletal muscle LIM-pro 48.8 14 0.00047 25.3 3.1 39 260-307 5-45 (72)
123 1wew_A DNA-binding family prot 47.9 7.7 0.00026 27.8 1.7 47 259-306 15-72 (78)
124 3ask_A E3 ubiquitin-protein li 46.8 4.5 0.00015 35.4 0.3 47 260-306 174-225 (226)
125 3i2d_A E3 SUMO-protein ligase 46.1 16 0.00055 34.2 4.0 46 260-307 249-298 (371)
126 2ysm_A Myeloid/lymphoid or mix 46.0 2.9 9.9E-05 32.0 -1.0 44 262-305 56-103 (111)
127 1x64_A Alpha-actinin-2 associa 45.9 23 0.00078 25.4 4.1 40 258-308 23-62 (89)
128 1x61_A Thyroid receptor intera 45.7 19 0.00063 24.6 3.4 37 258-296 31-67 (72)
129 2rsd_A E3 SUMO-protein ligase 44.8 2.6 8.9E-05 29.5 -1.3 47 259-305 8-64 (68)
130 2kwj_A Zinc finger protein DPF 44.6 13 0.00044 28.6 2.6 33 261-293 2-41 (114)
131 3kqi_A GRC5, PHD finger protei 44.3 7.8 0.00027 27.5 1.2 49 258-306 7-61 (75)
132 2dar_A PDZ and LIM domain prot 44.2 16 0.00055 26.3 3.0 39 259-308 24-62 (90)
133 1g47_A Pinch protein; LIM doma 44.1 21 0.00071 24.6 3.5 40 259-307 10-49 (77)
134 2d8z_A Four and A half LIM dom 43.7 21 0.00073 24.1 3.4 26 261-289 6-31 (70)
135 2gmg_A Hypothetical protein PF 43.6 5.2 0.00018 30.8 0.2 21 281-306 73-93 (105)
136 4fo9_A E3 SUMO-protein ligase 43.0 19 0.00066 33.6 3.9 46 260-307 215-264 (360)
137 1x68_A FHL5 protein; four-and- 42.5 17 0.00057 25.3 2.7 39 260-307 5-45 (76)
138 1wyh_A SLIM 2, skeletal muscle 42.1 21 0.00072 24.3 3.2 28 261-289 6-33 (72)
139 2cor_A Pinch protein; LIM doma 42.1 22 0.00075 25.0 3.4 37 260-307 15-51 (79)
140 1x4k_A Skeletal muscle LIM-pro 42.1 18 0.00063 24.6 2.9 38 261-307 6-43 (72)
141 2d8x_A Protein pinch; LIM doma 41.1 17 0.00057 24.7 2.5 26 261-289 6-31 (70)
142 2g6q_A Inhibitor of growth pro 40.8 5.4 0.00019 27.5 -0.1 41 260-306 10-60 (62)
143 1x63_A Skeletal muscle LIM-pro 40.2 23 0.00077 24.8 3.2 40 260-308 15-54 (82)
144 2kwj_A Zinc finger protein DPF 39.5 1.7 5.9E-05 33.7 -3.2 46 261-306 59-108 (114)
145 1zbd_B Rabphilin-3A; G protein 39.4 12 0.00041 29.9 1.7 34 258-291 53-88 (134)
146 3mjh_B Early endosome antigen 37.7 3.6 0.00012 25.1 -1.3 17 259-275 4-20 (34)
147 1a7i_A QCRP2 (LIM1); LIM domai 37.6 10 0.00036 26.7 1.0 28 260-289 7-34 (81)
148 2cur_A Skeletal muscle LIM-pro 37.5 19 0.00064 24.4 2.3 11 261-271 6-16 (69)
149 1wfk_A Zinc finger, FYVE domai 36.2 32 0.0011 25.2 3.5 36 258-293 7-43 (88)
150 2l4z_A DNA endonuclease RBBP8, 35.9 31 0.0011 26.7 3.6 39 259-307 60-98 (123)
151 1nyp_A Pinch protein; LIM doma 35.8 22 0.00076 23.7 2.5 37 260-307 5-41 (66)
152 2o35_A Hypothetical protein DU 35.2 15 0.00051 27.9 1.5 13 284-296 42-54 (105)
153 3fyb_A Protein of unknown func 35.0 15 0.00052 27.8 1.5 12 284-295 41-52 (104)
154 3a1b_A DNA (cytosine-5)-methyl 34.9 33 0.0011 28.2 3.7 36 257-296 76-114 (159)
155 2d8v_A Zinc finger FYVE domain 33.6 30 0.001 24.2 2.7 33 257-293 5-38 (67)
156 3f6q_B LIM and senescent cell 33.5 29 0.001 23.3 2.8 40 259-307 10-49 (72)
157 6rxn_A Rubredoxin; electron tr 30.0 11 0.00036 24.5 -0.1 12 261-272 5-16 (46)
158 1vfy_A Phosphatidylinositol-3- 29.6 36 0.0012 23.8 2.7 34 260-293 11-45 (73)
159 1zfo_A LAsp-1; LIM domain, zin 29.5 16 0.00054 21.3 0.7 27 261-289 4-30 (31)
160 3o7a_A PHD finger protein 13 v 29.4 9.7 0.00033 25.0 -0.4 45 261-305 4-51 (52)
161 2l3k_A Rhombotin-2, linker, LI 29.0 23 0.00078 27.2 1.7 39 256-295 32-70 (123)
162 1x4i_A Inhibitor of growth pro 28.7 21 0.00071 25.1 1.3 45 259-306 4-55 (70)
163 1wig_A KIAA1808 protein; LIM d 28.6 36 0.0012 23.4 2.6 36 257-293 28-63 (73)
164 2jvx_A NF-kappa-B essential mo 28.2 12 0.00041 21.7 -0.0 11 297-307 3-13 (28)
165 1x6a_A LIMK-2, LIM domain kina 27.8 29 0.001 24.2 2.0 37 258-294 39-75 (81)
166 2cuq_A Four and A half LIM dom 27.7 36 0.0012 23.6 2.5 36 261-307 16-51 (80)
167 2zet_C Melanophilin; complex, 27.5 30 0.001 28.2 2.2 33 258-290 66-100 (153)
168 2yw8_A RUN and FYVE domain-con 27.3 42 0.0015 24.0 2.8 36 258-293 17-53 (82)
169 2jne_A Hypothetical protein YF 27.2 17 0.00059 27.5 0.7 41 260-308 32-72 (101)
170 1z2q_A LM5-1; membrane protein 27.2 48 0.0016 23.8 3.1 36 258-293 19-55 (84)
171 1y02_A CARP2, FYVE-ring finger 27.1 11 0.00036 29.7 -0.6 46 259-304 18-64 (120)
172 2dlo_A Thyroid receptor-intera 26.7 30 0.001 24.2 1.9 37 260-307 15-51 (81)
173 1v6g_A Actin binding LIM prote 26.6 32 0.0011 24.1 2.0 36 261-307 16-51 (81)
174 3t7l_A Zinc finger FYVE domain 26.2 37 0.0013 24.8 2.4 36 259-294 19-55 (90)
175 2egq_A FHL1 protein; LIM domai 25.8 44 0.0015 22.9 2.6 40 260-308 15-57 (77)
176 1dvp_A HRS, hepatocyte growth 25.5 32 0.0011 29.4 2.2 35 259-293 160-195 (220)
177 2cup_A Skeletal muscle LIM-pro 25.3 58 0.002 23.5 3.4 47 258-308 31-77 (101)
178 1x3h_A Leupaxin; paxillin fami 24.5 36 0.0012 23.6 2.0 36 261-307 16-51 (80)
179 3kv5_D JMJC domain-containing 23.8 20 0.00069 34.8 0.6 48 258-305 34-87 (488)
180 2kpi_A Uncharacterized protein 23.8 6.8 0.00023 26.5 -2.0 17 291-307 4-20 (56)
181 1joc_A EEA1, early endosomal a 23.6 46 0.0016 26.0 2.6 35 259-293 68-103 (125)
182 2xqn_T Testin, TESS; metal-bin 23.4 51 0.0018 25.0 2.9 48 257-308 27-74 (126)
183 3zyq_A Hepatocyte growth facto 23.4 38 0.0013 29.2 2.2 35 259-293 163-198 (226)
184 1b8t_A Protein (CRP1); LIM dom 23.3 44 0.0015 27.6 2.6 27 261-289 116-142 (192)
185 1x4u_A Zinc finger, FYVE domai 23.2 57 0.002 23.4 2.9 36 258-293 12-48 (84)
186 2pv0_B DNA (cytosine-5)-methyl 22.1 55 0.0019 30.8 3.2 34 258-294 91-126 (386)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.73 E-value=3.4e-18 Score=131.84 Aligned_cols=77 Identities=30% Similarity=0.659 Sum_probs=67.5
Q ss_pred CCCCCCCHHHHhcCCCceeeccccccccCCCCCCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCccc
Q 021673 224 AADKGASDDQISRLPSWRYKRVDSNLEAGNSAPANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLC 303 (309)
Q Consensus 224 ~~~~g~s~~~i~~Lp~~~~~~~~~~~~~~~~~~~~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~tCPlC 303 (309)
...+|++++.+++||..++..... ...++.+|+||+++|.+++.++.+||+|.||..||++|++.+.+||+|
T Consensus 12 ~~~~~~s~~~i~~lp~~~~~~~~~--------~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~C 83 (91)
T 2l0b_A 12 VANPPASKESIDALPEILVTEDHG--------AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVC 83 (91)
T ss_dssp SCCCCCCHHHHHTSCEEECCTTCS--------SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTT
T ss_pred cCCCCCCHHHHHhCCCeeeccccc--------ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCc
Confidence 456899999999999888765431 235678999999999999999999999999999999999999999999
Q ss_pred ccccC
Q 021673 304 KQELE 308 (309)
Q Consensus 304 R~~i~ 308 (309)
|.++.
T Consensus 84 r~~~~ 88 (91)
T 2l0b_A 84 RCMFP 88 (91)
T ss_dssp CCBSS
T ss_pred CccCC
Confidence 99875
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=4.7e-18 Score=126.05 Aligned_cols=68 Identities=34% Similarity=0.923 Sum_probs=59.1
Q ss_pred HHHhcCCCceeeccccccccCCCCCCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCcccccccC
Q 021673 232 DQISRLPSWRYKRVDSNLEAGNSAPANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 232 ~~i~~Lp~~~~~~~~~~~~~~~~~~~~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
+.+++||.+++.... ...++.+|+||+++|.+++.++.+||+|.||.+||++|++.+.+||+||+++.
T Consensus 4 ~~i~~lp~~~~~~~~---------~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 4 GSSGQLPSYRFNPNN---------HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp CCCSSCCCEEBCSSS---------CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred hhHhhCCcEEecCcc---------ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 346788888886543 23567899999999999999999999999999999999999999999999875
No 3
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=6.7e-16 Score=113.89 Aligned_cols=53 Identities=36% Similarity=0.902 Sum_probs=49.0
Q ss_pred CCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCcccccccC
Q 021673 256 PANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 256 ~~~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
...++.+|+||+++|.+++.++.+||+|.||.+||++|++.+.+||+||+++.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 63 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccc
Confidence 34568899999999999999999999999999999999999999999999875
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=8.2e-16 Score=111.89 Aligned_cols=53 Identities=45% Similarity=1.074 Sum_probs=48.8
Q ss_pred CCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCcccccccC
Q 021673 256 PANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 256 ~~~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
...++.+|+||++.|.+++.++.+||+|.||.+||.+|++.+.+||+||.++.
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCcccc
Confidence 34677899999999999999999999999999999999999999999999875
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.60 E-value=4.4e-16 Score=108.18 Aligned_cols=51 Identities=47% Similarity=1.050 Sum_probs=47.6
Q ss_pred CCCCcccccccccccCCceEEeC-CCCcccHHHHHHHHhcCCCCcccccccC
Q 021673 258 NEDPECCICLAKYKEKEEVRKLP-CSHMFHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~Lp-C~H~FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
+++.+|+||++++.+++....+| |+|.||.+||++|++.+.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 46789999999999999999998 9999999999999999999999999874
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.58 E-value=1.1e-15 Score=113.77 Aligned_cols=54 Identities=37% Similarity=0.918 Sum_probs=49.4
Q ss_pred CCCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCcccccccC
Q 021673 255 APANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 255 ~~~~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
....++.+|+||+++|.+++.++.+||+|.||.+||.+|++.+.+||+||+++.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 63 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT 63 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccC
Confidence 344678899999999999999999999999999999999999999999999875
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=3.9e-15 Score=112.23 Aligned_cols=50 Identities=32% Similarity=0.751 Sum_probs=41.6
Q ss_pred CCCccccccccccc-----------CCceEEeC-CCCcccHHHHHHHHhcCCCCcccccccC
Q 021673 259 EDPECCICLAKYKE-----------KEEVRKLP-CSHMFHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 259 ~~~~C~ICL~~~~~-----------~~~v~~Lp-C~H~FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
++++|+||++++++ ++.++.++ |+|.||.+||++||+.+.+||+||+++.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 56667777777754 45566776 9999999999999999999999999874
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.51 E-value=9.6e-15 Score=101.27 Aligned_cols=51 Identities=29% Similarity=0.670 Sum_probs=45.3
Q ss_pred CCCCcccccccccccC-CceEEeCCCCcccHHHHHHHHhcCCCCcccccccC
Q 021673 258 NEDPECCICLAKYKEK-EEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~-~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
.++.+|+||++++.++ +..+.+||+|.||.+||++|++.+.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4678999999999664 45788999999999999999999999999999875
No 9
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.3e-14 Score=104.96 Aligned_cols=54 Identities=24% Similarity=0.660 Sum_probs=47.1
Q ss_pred CCCCCCcccccccccccC----CceEEeCCCCcccHHHHHHHHhcCCCCcccccccCC
Q 021673 256 PANEDPECCICLAKYKEK----EEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELER 309 (309)
Q Consensus 256 ~~~~~~~C~ICL~~~~~~----~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i~~ 309 (309)
...++.+|+||++.|.++ +.+..++|+|.||.+||++|++.+.+||+||.++.+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 346788999999999875 445789999999999999999999999999999863
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.48 E-value=1.7e-14 Score=105.20 Aligned_cols=52 Identities=25% Similarity=0.687 Sum_probs=46.4
Q ss_pred CCCCCcccccccccccC----CceEEeCCCCcccHHHHHHHHhcCCCCcccccccC
Q 021673 257 ANEDPECCICLAKYKEK----EEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 257 ~~~~~~C~ICL~~~~~~----~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
..++.+|+||++.+.++ +....++|+|.||.+||++|++.+.+||+||.++.
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 62 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccC
Confidence 35788999999999774 56688999999999999999999999999999875
No 11
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.47 E-value=3e-14 Score=112.96 Aligned_cols=50 Identities=30% Similarity=0.667 Sum_probs=43.9
Q ss_pred CCCCcccccccccccCC---------------ceEEeCCCCcccHHHHHHHHhcCCCCccccccc
Q 021673 258 NEDPECCICLAKYKEKE---------------EVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 307 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~---------------~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i 307 (309)
.+++.|+||+++|+++. .++.++|+|.||.+||++||+.+.+||+||+++
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 35788999999998652 367889999999999999999999999999975
No 12
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.46 E-value=4e-14 Score=112.90 Aligned_cols=50 Identities=32% Similarity=0.588 Sum_probs=42.3
Q ss_pred CCCcccccccccccCC---------------ceEEeCCCCcccHHHHHHHH-----hcCCCCcccccccC
Q 021673 259 EDPECCICLAKYKEKE---------------EVRKLPCSHMFHLKCVDQWL-----RILSCCPLCKQELE 308 (309)
Q Consensus 259 ~~~~C~ICL~~~~~~~---------------~v~~LpC~H~FH~~CI~~WL-----~~~~tCPlCR~~i~ 308 (309)
.+.+|+||+++|.+++ .++.+||+|.||.+||++|+ +.+.+||+||..+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 4679999999997754 45588999999999999999 45779999999764
No 13
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=4e-14 Score=106.62 Aligned_cols=51 Identities=31% Similarity=0.833 Sum_probs=44.3
Q ss_pred CCCCCcccccccccccCCceEEeCCC-----CcccHHHHHHHHhcC--CCCcccccccC
Q 021673 257 ANEDPECCICLAKYKEKEEVRKLPCS-----HMFHLKCVDQWLRIL--SCCPLCKQELE 308 (309)
Q Consensus 257 ~~~~~~C~ICL~~~~~~~~v~~LpC~-----H~FH~~CI~~WL~~~--~tCPlCR~~i~ 308 (309)
..++.+|.||+++|++++.+ ++||+ |.||.+||++||+.+ .+||+||+++.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 45678999999999988776 69996 999999999999875 58999999863
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.45 E-value=3.4e-14 Score=101.26 Aligned_cols=50 Identities=26% Similarity=0.692 Sum_probs=44.9
Q ss_pred CCCcccccccccccC----CceEEeCCCCcccHHHHHHHHhcCCCCcccccccC
Q 021673 259 EDPECCICLAKYKEK----EEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 259 ~~~~C~ICL~~~~~~----~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
++.+|+||++.+.++ +....++|+|.||.+||++|++.+.+||+||.++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCC
Confidence 577999999999864 45678999999999999999999999999999875
No 15
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=5.6e-14 Score=102.84 Aligned_cols=50 Identities=38% Similarity=0.782 Sum_probs=44.8
Q ss_pred CCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCcccccccC
Q 021673 256 PANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 256 ~~~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
...++.+|+||++.+.+. ..+||+|.||.+||++|++.+.+||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSSSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred cCCCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 345778999999998776 77899999999999999999999999999875
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=2.3e-13 Score=99.83 Aligned_cols=50 Identities=20% Similarity=0.471 Sum_probs=44.1
Q ss_pred CCCCCCcccccccccccCCceEEe-CCCCcccHHHHHHHHhcCCCCcccccccC
Q 021673 256 PANEDPECCICLAKYKEKEEVRKL-PCSHMFHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 256 ~~~~~~~C~ICL~~~~~~~~v~~L-pC~H~FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
...++..|+||++.+.++ ..+ +|+|.||.+||++|++.+.+||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVH 61 (72)
T ss_dssp CCCGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCC
T ss_pred hcCCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccC
Confidence 346788999999999876 455 99999999999999999999999999875
No 17
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=9.2e-14 Score=101.20 Aligned_cols=48 Identities=35% Similarity=1.007 Sum_probs=43.6
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCcccccccC
Q 021673 257 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 257 ~~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
..++.+|+||++.+.+ ..+||+|.||.+||++|++.+.+||+||.++.
T Consensus 12 ~~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59 (70)
T ss_dssp CCCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTT
T ss_pred CCCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCccc
Confidence 3567899999999877 77999999999999999999999999999875
No 18
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.40 E-value=1.7e-13 Score=99.16 Aligned_cols=49 Identities=37% Similarity=0.840 Sum_probs=43.7
Q ss_pred CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCcccccccC
Q 021673 258 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
+++.+|+||++.+.++ ...+||+|.||.+|+++|++.+.+||+||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 4678999999998753 478999999999999999999999999999875
No 19
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=3.9e-13 Score=100.78 Aligned_cols=50 Identities=22% Similarity=0.487 Sum_probs=44.3
Q ss_pred CCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCcccccccC
Q 021673 256 PANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 256 ~~~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
...++..|+||++.+.++ ..+||+|.||..||.+|++.+.+||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 345678999999999876 57899999999999999999999999999864
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=5.6e-13 Score=100.96 Aligned_cols=53 Identities=26% Similarity=0.622 Sum_probs=46.1
Q ss_pred CCCCCCcccccccccccCCc-eEEeCCCCcccHHHHHHHHhcC---CCCcccccccC
Q 021673 256 PANEDPECCICLAKYKEKEE-VRKLPCSHMFHLKCVDQWLRIL---SCCPLCKQELE 308 (309)
Q Consensus 256 ~~~~~~~C~ICL~~~~~~~~-v~~LpC~H~FH~~CI~~WL~~~---~tCPlCR~~i~ 308 (309)
...++.+|+||++.|.+++. .+.+||+|.||.+||++|++.+ .+||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 44678899999999998664 6788999999999999999876 78999999764
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.34 E-value=7.8e-13 Score=97.61 Aligned_cols=49 Identities=24% Similarity=0.581 Sum_probs=43.4
Q ss_pred CCCCCCcccccccccccCCceEEeC-CCCcccHHHHHHHHhcC--CCCccccccc
Q 021673 256 PANEDPECCICLAKYKEKEEVRKLP-CSHMFHLKCVDQWLRIL--SCCPLCKQEL 307 (309)
Q Consensus 256 ~~~~~~~C~ICL~~~~~~~~v~~Lp-C~H~FH~~CI~~WL~~~--~tCPlCR~~i 307 (309)
...++..|+||++.+.++ ..+| |+|.||..||++|++.+ .+||+||+++
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 62 (74)
T ss_dssp CSCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred cCCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence 346788999999999987 6799 99999999999999876 6899999975
No 22
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=6.6e-13 Score=95.62 Aligned_cols=49 Identities=18% Similarity=0.473 Sum_probs=42.8
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHh-cCCCCcccccccC
Q 021673 257 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLR-ILSCCPLCKQELE 308 (309)
Q Consensus 257 ~~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~-~~~tCPlCR~~i~ 308 (309)
..++..|+||++.+.++ ..++|+|.||.+||++|++ .+.+||+||.++.
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIV 61 (66)
T ss_dssp CCCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred CCcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence 35678999999999887 4479999999999999994 5789999999875
No 23
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.34 E-value=1.1e-13 Score=111.34 Aligned_cols=49 Identities=33% Similarity=0.744 Sum_probs=1.2
Q ss_pred CCCcccccccccccC-------------C--ceEEeCCCCcccHHHHHHHHhcCCCCccccccc
Q 021673 259 EDPECCICLAKYKEK-------------E--EVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 307 (309)
Q Consensus 259 ~~~~C~ICL~~~~~~-------------~--~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i 307 (309)
+++.|+||+++|+++ + .+..++|+|.||.+||++||+.+.+||+||+++
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp CC--------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 567999999999863 2 233458999999999999999999999999974
No 24
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=9.3e-13 Score=96.42 Aligned_cols=49 Identities=35% Similarity=0.689 Sum_probs=43.0
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHh---cCCCCcccccccC
Q 021673 257 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLR---ILSCCPLCKQELE 308 (309)
Q Consensus 257 ~~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~---~~~tCPlCR~~i~ 308 (309)
..++.+|+||++.+.++ ..+||+|.||.+||.+|++ .+..||+||.++.
T Consensus 17 ~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 17 LQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred CccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 45788999999999876 6779999999999999997 4678999999875
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.29 E-value=7.5e-13 Score=109.37 Aligned_cols=47 Identities=28% Similarity=0.879 Sum_probs=43.0
Q ss_pred CCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCcccccccC
Q 021673 259 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 259 ~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
++..|+||++.|.++ ..+||+|.||..||.+|++.+.+||+||.++.
T Consensus 52 ~~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 52 NELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp HHSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred ccCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 456899999999876 77899999999999999999999999999874
No 26
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.27 E-value=2.9e-12 Score=95.13 Aligned_cols=49 Identities=20% Similarity=0.392 Sum_probs=44.2
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhc-CCCCcccccccC
Q 021673 257 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI-LSCCPLCKQELE 308 (309)
Q Consensus 257 ~~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~-~~tCPlCR~~i~ 308 (309)
..++..|+||++.+.++ ..+||+|.||..||.+|++. +.+||+||.++.
T Consensus 5 ~~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp CSSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred CcccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 46789999999999887 67899999999999999987 789999999874
No 27
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.27 E-value=4.1e-12 Score=95.18 Aligned_cols=49 Identities=29% Similarity=0.611 Sum_probs=43.7
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhc------CCCCcccccccC
Q 021673 257 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI------LSCCPLCKQELE 308 (309)
Q Consensus 257 ~~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~------~~tCPlCR~~i~ 308 (309)
..++.+|+||++.+.++ ..+||+|.||.+||.+|++. +..||.||.++.
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CCTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred CccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 35688999999999887 57899999999999999987 678999999875
No 28
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=5.7e-12 Score=89.72 Aligned_cols=44 Identities=36% Similarity=0.725 Sum_probs=39.2
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHh---cCCCCccc
Q 021673 257 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLR---ILSCCPLC 303 (309)
Q Consensus 257 ~~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~---~~~tCPlC 303 (309)
..++.+|+||++.+.++ ..+||+|.||.+||.+|++ .+.+||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 46788999999999987 6789999999999999998 46789998
No 29
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.26 E-value=2.2e-12 Score=104.57 Aligned_cols=51 Identities=25% Similarity=0.699 Sum_probs=45.9
Q ss_pred CCCCcccccccccccC----CceEEeCCCCcccHHHHHHHHhcCCCCcccccccC
Q 021673 258 NEDPECCICLAKYKEK----EEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~----~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
.++.+|+||++.|.++ +....++|+|.||.+||++|++.+.+||+||+++.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 59 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCc
Confidence 5678999999999875 56688999999999999999999999999999875
No 30
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.26 E-value=9.9e-13 Score=97.67 Aligned_cols=49 Identities=29% Similarity=0.590 Sum_probs=43.2
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhc-------CCCCcccccccC
Q 021673 257 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI-------LSCCPLCKQELE 308 (309)
Q Consensus 257 ~~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~-------~~tCPlCR~~i~ 308 (309)
..++.+|+||++.+.++ ..+||+|.||.+||.+|++. +..||+||.++.
T Consensus 9 ~~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 9 VQEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred cccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 45788999999999887 56899999999999999987 678999999874
No 31
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=4.6e-12 Score=94.95 Aligned_cols=49 Identities=29% Similarity=0.657 Sum_probs=43.5
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhc------CCCCcccccccC
Q 021673 257 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI------LSCCPLCKQELE 308 (309)
Q Consensus 257 ~~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~------~~tCPlCR~~i~ 308 (309)
..++.+|+||++.+.++ ..+||+|.||.+|+.+|++. +..||.||..+.
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred ccCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 45788999999999886 56799999999999999987 789999999875
No 32
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=5.6e-12 Score=93.28 Aligned_cols=52 Identities=21% Similarity=0.511 Sum_probs=43.8
Q ss_pred CCCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC--CCCcccccccC
Q 021673 255 APANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL--SCCPLCKQELE 308 (309)
Q Consensus 255 ~~~~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~--~tCPlCR~~i~ 308 (309)
...+...+|+||.+.+..++... .|+|.||..||++||+.+ .+||+||++.+
T Consensus 10 ~y~~~i~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 10 TYPDAVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp CCSSSSCBCSSSCCBCSSSEECS--SSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred hccCCCCcCcchhhHcccCCccC--CCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 34456789999999999875433 799999999999999987 89999998763
No 33
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.23 E-value=2.7e-12 Score=100.23 Aligned_cols=48 Identities=31% Similarity=0.799 Sum_probs=42.6
Q ss_pred CCCCcccccccccccCCceEE-eCCCCcccHHHHHHHHhcC-CCCcccccccC
Q 021673 258 NEDPECCICLAKYKEKEEVRK-LPCSHMFHLKCVDQWLRIL-SCCPLCKQELE 308 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~-LpC~H~FH~~CI~~WL~~~-~tCPlCR~~i~ 308 (309)
.++..|+||++.+.++ .. ++|+|.||..||.+|++.+ .+||+||.++.
T Consensus 20 ~~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 3678999999999876 56 8999999999999999987 79999999874
No 34
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=5.5e-12 Score=88.02 Aligned_cols=44 Identities=30% Similarity=0.775 Sum_probs=38.3
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHH---hcCCCCccc
Q 021673 257 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWL---RILSCCPLC 303 (309)
Q Consensus 257 ~~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL---~~~~tCPlC 303 (309)
..++..|+||++.+.++ ..+||+|.||.+||++|+ +.+.+||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 45678999999999887 568999999999999995 456889998
No 35
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.21 E-value=4.7e-12 Score=98.40 Aligned_cols=48 Identities=23% Similarity=0.616 Sum_probs=42.5
Q ss_pred CCCCcccccccccccCCceEEe-CCCCcccHHHHHHHHhcCCCCcccccccC
Q 021673 258 NEDPECCICLAKYKEKEEVRKL-PCSHMFHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~L-pC~H~FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
.++..|+||++.+.++ ..+ +|+|.||..||.+|++.+.+||+||.++.
T Consensus 20 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 20 DDLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68 (99)
T ss_dssp HHHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCC
Confidence 3567999999999876 555 89999999999999999999999999874
No 36
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.20 E-value=8.7e-12 Score=89.42 Aligned_cols=50 Identities=28% Similarity=0.548 Sum_probs=41.4
Q ss_pred CCCccccccc-ccccCCce-EEeCCCCcccHHHHHHHHhc-CCCCcccccccC
Q 021673 259 EDPECCICLA-KYKEKEEV-RKLPCSHMFHLKCVDQWLRI-LSCCPLCKQELE 308 (309)
Q Consensus 259 ~~~~C~ICL~-~~~~~~~v-~~LpC~H~FH~~CI~~WL~~-~~tCPlCR~~i~ 308 (309)
++..|+||++ .+.++... ..++|+|.||.+||++|+.. +..||+||+++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 4678999999 77776543 45799999999999999765 578999999875
No 37
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.19 E-value=1.4e-11 Score=94.21 Aligned_cols=49 Identities=24% Similarity=0.581 Sum_probs=43.3
Q ss_pred CCCCCCcccccccccccCCceEEeC-CCCcccHHHHHHHHhcC--CCCccccccc
Q 021673 256 PANEDPECCICLAKYKEKEEVRKLP-CSHMFHLKCVDQWLRIL--SCCPLCKQEL 307 (309)
Q Consensus 256 ~~~~~~~C~ICL~~~~~~~~v~~Lp-C~H~FH~~CI~~WL~~~--~tCPlCR~~i 307 (309)
...++..|+||++.+.++ ..+| |+|.||..||.+|++.+ .+||+||.++
T Consensus 9 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 446789999999999987 7899 99999999999999754 6899999986
No 38
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.18 E-value=9.7e-12 Score=98.22 Aligned_cols=48 Identities=23% Similarity=0.690 Sum_probs=42.8
Q ss_pred CCCCcccccccccccCCceEEe-CCCCcccHHHHHHHHhcCCCCcccccccC
Q 021673 258 NEDPECCICLAKYKEKEEVRKL-PCSHMFHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~L-pC~H~FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
.++..|+||++.+.++ ..+ +|+|.||..||.+|++.+.+||+||.++.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLETSKYCPICDVQVH 61 (108)
T ss_dssp GGGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSC
T ss_pred CCcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccc
Confidence 4678999999999875 555 99999999999999999999999999874
No 39
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.17 E-value=1.2e-11 Score=100.21 Aligned_cols=51 Identities=25% Similarity=0.699 Sum_probs=45.3
Q ss_pred CCCCcccccccccccC----CceEEeCCCCcccHHHHHHHHhcCCCCcccccccC
Q 021673 258 NEDPECCICLAKYKEK----EEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~----~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
+++.+|+||++.++++ .....++|+|.||..||++|++.+.+||+||.++.
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 124 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCC
Confidence 5678999999999874 44578899999999999999999999999999885
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.16 E-value=1.2e-11 Score=100.11 Aligned_cols=48 Identities=25% Similarity=0.531 Sum_probs=42.1
Q ss_pred CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC-CCCcccccccC
Q 021673 258 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL-SCCPLCKQELE 308 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~-~tCPlCR~~i~ 308 (309)
.++..|+||++.+.++ ..+||+|.||..||.+|++.+ .+||+||.++.
T Consensus 50 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 50 EETFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLG 98 (124)
T ss_dssp HHHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred ccCCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCC
Confidence 3567899999999987 678999999999999999865 49999999874
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.14 E-value=3e-11 Score=102.48 Aligned_cols=78 Identities=23% Similarity=0.350 Sum_probs=52.3
Q ss_pred CCCCCHHHHhcCCCceeeccccccccCCCCCCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhc-CCCCcccc
Q 021673 226 DKGASDDQISRLPSWRYKRVDSNLEAGNSAPANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI-LSCCPLCK 304 (309)
Q Consensus 226 ~~g~s~~~i~~Lp~~~~~~~~~~~~~~~~~~~~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~-~~tCPlCR 304 (309)
..+.+...+.+.+......... .........++..|+||++.+.++ +..+||+|.||..||++|++. +.+||+||
T Consensus 22 ~~~l~~~~~~r~~~~~~~~~~~--~~~~~~~~~~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr 97 (165)
T 2ckl_B 22 TWELSLYELQRTPQEAITDGLE--IVVSPRSLHSELMCPICLDMLKNT--MTTKECLHRFCADCIITALRSGNKECPTCR 97 (165)
T ss_dssp CCCCCHHHHHCCCCCCCCSCCE--EC----CCHHHHBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHHTTCCBCTTTC
T ss_pred cccCCHHHHhcCchhhhccccc--cccchhhCCCCCCCcccChHhhCc--CEeCCCCChhHHHHHHHHHHhCcCCCCCCC
Confidence 3455666666655432222111 111112234677999999999875 333499999999999999997 78999999
Q ss_pred ccc
Q 021673 305 QEL 307 (309)
Q Consensus 305 ~~i 307 (309)
.++
T Consensus 98 ~~~ 100 (165)
T 2ckl_B 98 KKL 100 (165)
T ss_dssp CBC
T ss_pred CcC
Confidence 987
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.10 E-value=2.3e-11 Score=96.17 Aligned_cols=47 Identities=36% Similarity=0.701 Sum_probs=41.1
Q ss_pred CCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCC---CCcccccccC
Q 021673 259 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILS---CCPLCKQELE 308 (309)
Q Consensus 259 ~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~---tCPlCR~~i~ 308 (309)
++.+|+||++.+.++ ..+||+|.||..||.+|++.+. +||+||.++.
T Consensus 20 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 20 KILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HHTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 467899999999877 5589999999999999998754 8999999874
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.07 E-value=4.9e-11 Score=95.72 Aligned_cols=49 Identities=31% Similarity=0.590 Sum_probs=43.2
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCC-CCcccccccC
Q 021673 257 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILS-CCPLCKQELE 308 (309)
Q Consensus 257 ~~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~-tCPlCR~~i~ 308 (309)
..++..|+||++.+.++ ..++|+|.||..||.+|++.+. +||+||.++.
T Consensus 15 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (118)
T 3hct_A 15 LESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (118)
T ss_dssp CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcC
Confidence 35678999999999887 6789999999999999998765 9999999874
No 44
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.07 E-value=1.5e-11 Score=98.05 Aligned_cols=48 Identities=27% Similarity=0.748 Sum_probs=42.7
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhc-CCCCccccccc
Q 021673 257 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI-LSCCPLCKQEL 307 (309)
Q Consensus 257 ~~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~-~~tCPlCR~~i 307 (309)
..++..|+||++.+.++ ..+||+|.||..||.+|++. +.+||+||.++
T Consensus 12 ~~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (115)
T 3l11_A 12 SLSECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRV 60 (115)
T ss_dssp CHHHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBC
T ss_pred CCCCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCccc
Confidence 35678999999999887 77899999999999999976 67899999976
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.05 E-value=6.6e-11 Score=99.21 Aligned_cols=47 Identities=19% Similarity=0.508 Sum_probs=41.8
Q ss_pred CCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCC-CCcccccccC
Q 021673 259 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILS-CCPLCKQELE 308 (309)
Q Consensus 259 ~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~-tCPlCR~~i~ 308 (309)
++..|+||++.+.++ ..+||+|.||..||.+|++.+. +||+||.++.
T Consensus 77 ~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 124 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLG 124 (150)
T ss_dssp HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred cCCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCC
Confidence 567999999999887 6689999999999999998764 8999999875
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.04 E-value=6.7e-11 Score=94.44 Aligned_cols=48 Identities=25% Similarity=0.553 Sum_probs=42.5
Q ss_pred CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhc-CCCCcccccccC
Q 021673 258 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI-LSCCPLCKQELE 308 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~-~~tCPlCR~~i~ 308 (309)
.++..|+||++.+.++ ..++|+|.||..||.+|++. +.+||+||.++.
T Consensus 21 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (116)
T 1rmd_A 21 VKSISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69 (116)
T ss_dssp HHHTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred cCCCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCC
Confidence 3577999999999876 66899999999999999987 789999999874
No 47
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.04 E-value=6.9e-11 Score=84.89 Aligned_cols=48 Identities=23% Similarity=0.546 Sum_probs=41.7
Q ss_pred CCCCcccccccccccCCceEEe--CCCCc-ccHHHHHHHHhcCCCCcccccccC
Q 021673 258 NEDPECCICLAKYKEKEEVRKL--PCSHM-FHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~L--pC~H~-FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
+++.+|.||++...+. ..+ ||+|. |+.+|+++|.+.+..||+||++++
T Consensus 6 ~~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 4677999999986665 444 99999 899999999999999999999885
No 48
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.02 E-value=2.4e-10 Score=86.63 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=45.2
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCcccccccC
Q 021673 257 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 257 ~~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
..++..|+||++-+.++ ..+||||.|++.||.+|++.+.+||.||.++.
T Consensus 11 ~p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp CCTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CchheECcccCchhcCC---eECCCCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 46789999999999999 78999999999999999999999999999874
No 49
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.00 E-value=2.4e-10 Score=85.43 Aligned_cols=51 Identities=18% Similarity=0.459 Sum_probs=40.9
Q ss_pred CCCCCcccccccccccCCceEEeC--CCCcccHHHHHHHHh-cCCCCcccccccC
Q 021673 257 ANEDPECCICLAKYKEKEEVRKLP--CSHMFHLKCVDQWLR-ILSCCPLCKQELE 308 (309)
Q Consensus 257 ~~~~~~C~ICL~~~~~~~~v~~Lp--C~H~FH~~CI~~WL~-~~~tCPlCR~~i~ 308 (309)
..++.+|+||++.+..++. ..+| |||.||..|+.++.+ .+..||.||+++.
T Consensus 8 ~~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 61 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCS
T ss_pred cccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccC
Confidence 4678899999999864332 3444 999999999999985 4678999999875
No 50
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.98 E-value=8.1e-11 Score=82.14 Aligned_cols=45 Identities=27% Similarity=0.546 Sum_probs=39.8
Q ss_pred CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCcccccccC
Q 021673 258 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
.++..|+||++.|.++ +.|||+|.||..||.+ .+..||+||+++.
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~---~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEA---SGMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSS---SSSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCe---EEcCCCCcccHHHHcc---CCCCCCcCCcEee
Confidence 5678899999999987 7799999999999988 3678999999874
No 51
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.97 E-value=1.7e-10 Score=82.60 Aligned_cols=48 Identities=21% Similarity=0.593 Sum_probs=41.4
Q ss_pred CCCCcccccccccccCCceEEe--CCCCc-ccHHHHHHHHhcCCCCcccccccC
Q 021673 258 NEDPECCICLAKYKEKEEVRKL--PCSHM-FHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~L--pC~H~-FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
+.+.+|.||++...+. ..+ ||+|. |+.+|+.+|.+.+..||+||+++.
T Consensus 5 ~~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 4577999999986654 445 99998 999999999998899999999885
No 52
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.97 E-value=4.2e-10 Score=87.98 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=45.4
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCcccccccC
Q 021673 257 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 257 ~~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
..++..|+||++-+.++ ..+||||.|++.||.+|+..+.+||.||.++.
T Consensus 26 ~p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 74 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLT 74 (100)
T ss_dssp CSTTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCC
T ss_pred CcHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCCCCCCCCCCCC
Confidence 46789999999999999 88999999999999999998999999999874
No 53
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.97 E-value=5.3e-10 Score=87.10 Aligned_cols=49 Identities=16% Similarity=0.052 Sum_probs=45.2
Q ss_pred CCCCCcccccccccccCCceEEeCCC-CcccHHHHHHHHhcCCCCcccccccC
Q 021673 257 ANEDPECCICLAKYKEKEEVRKLPCS-HMFHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 257 ~~~~~~C~ICL~~~~~~~~v~~LpC~-H~FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
..++..|+||++-+.++ ..+||+ |.|++.||.+|+..+.+||+||.++.
T Consensus 19 ~p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp CCTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred CcHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence 36789999999999999 789999 99999999999998999999999874
No 54
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.93 E-value=5.1e-10 Score=106.85 Aligned_cols=46 Identities=28% Similarity=0.732 Sum_probs=41.5
Q ss_pred CCcccccccccccCCceEEeCCCCcccHHHHHHHHh-cCCCCcccccccC
Q 021673 260 DPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLR-ILSCCPLCKQELE 308 (309)
Q Consensus 260 ~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~-~~~tCPlCR~~i~ 308 (309)
..+|+||++.+.+. ..+||+|.||..|+.+|++ .+.+||+||.++.
T Consensus 332 ~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~ 378 (389)
T 2y1n_A 332 FQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378 (389)
T ss_dssp SSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccC
Confidence 47999999998765 7899999999999999998 7899999999874
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.91 E-value=2.8e-10 Score=94.44 Aligned_cols=47 Identities=19% Similarity=0.397 Sum_probs=42.0
Q ss_pred CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC-CCCccccccc
Q 021673 258 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL-SCCPLCKQEL 307 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~-~tCPlCR~~i 307 (309)
+++..|+||++.+.++ ..++|+|.||..||.+|++.+ .+||+||.++
T Consensus 29 ~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 5788999999999888 668999999999999999866 4899999864
No 56
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.91 E-value=7.6e-10 Score=78.51 Aligned_cols=48 Identities=27% Similarity=0.666 Sum_probs=38.7
Q ss_pred CCCCcccccccccccCCceEEeCCC--C---cccHHHHHHHHhc--CCCCcccccccC
Q 021673 258 NEDPECCICLAKYKEKEEVRKLPCS--H---MFHLKCVDQWLRI--LSCCPLCKQELE 308 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~LpC~--H---~FH~~CI~~WL~~--~~tCPlCR~~i~ 308 (309)
+++..|.||+++. ++++ .+||+ | .||.+|+++|++. +.+||+||.++.
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 5678999999983 3444 68964 4 9999999999975 688999998764
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.88 E-value=2.8e-10 Score=83.89 Aligned_cols=43 Identities=26% Similarity=0.688 Sum_probs=38.5
Q ss_pred CCCcccccccccccCCceEEeCCCCc-ccHHHHHHHHhcCCCCcccccccC
Q 021673 259 EDPECCICLAKYKEKEEVRKLPCSHM-FHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 259 ~~~~C~ICL~~~~~~~~v~~LpC~H~-FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
++..|.||++.+.+. ..+||+|. ||..|+.+| ..||+||.++.
T Consensus 23 ~~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 23 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp HHTBCTTTSSSBCCE---EEETTCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred cCCCCCCCCCCCCCE---EEcCCCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 567899999987765 77899999 999999999 89999999875
No 58
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.86 E-value=3.2e-10 Score=90.81 Aligned_cols=46 Identities=26% Similarity=0.595 Sum_probs=40.9
Q ss_pred CCCCcccccccccccCCceEEe-CCCCcccHHHHHHHHhcCCCCcccccccC
Q 021673 258 NEDPECCICLAKYKEKEEVRKL-PCSHMFHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~L-pC~H~FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
.++..|+||++.|.++ ..+ ||+|.||..||.+|++ ..||+||.++.
T Consensus 20 ~~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 20 EKLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HHTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hhCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 3578999999999887 666 8999999999999998 88999999874
No 59
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.83 E-value=9.3e-10 Score=102.78 Aligned_cols=52 Identities=35% Similarity=0.807 Sum_probs=41.4
Q ss_pred CCCCCcccccccccccCCceE-----EeCCCCcccHHHHHHHHhcC-----------CCCcccccccC
Q 021673 257 ANEDPECCICLAKYKEKEEVR-----KLPCSHMFHLKCVDQWLRIL-----------SCCPLCKQELE 308 (309)
Q Consensus 257 ~~~~~~C~ICL~~~~~~~~v~-----~LpC~H~FH~~CI~~WL~~~-----------~tCPlCR~~i~ 308 (309)
.++..+|+||++.+.++.++- -.+|+|.||..|+.+||+.. .+||+||++|.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 357889999999998844332 23599999999999999752 46999999873
No 60
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=3.5e-09 Score=76.84 Aligned_cols=48 Identities=25% Similarity=0.654 Sum_probs=40.0
Q ss_pred CCCCCCCcccccccccccCCceEEeCCCCc-ccHHHHHHHHhcCCCCcccccccCC
Q 021673 255 APANEDPECCICLAKYKEKEEVRKLPCSHM-FHLKCVDQWLRILSCCPLCKQELER 309 (309)
Q Consensus 255 ~~~~~~~~C~ICL~~~~~~~~v~~LpC~H~-FH~~CI~~WL~~~~tCPlCR~~i~~ 309 (309)
....++.+|.||++...+. ..+||+|. |+.+|+.. ...||+||.++.+
T Consensus 10 ~~~~~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 10 PSEENSKDCVVCQNGTVNW---VLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSCCCSSCCSSSSSSCCCC---EETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred ccCCCCCCCCCcCcCCCCE---EEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 3446788999999986654 88999999 99999984 5899999998853
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.75 E-value=3.2e-09 Score=90.24 Aligned_cols=49 Identities=31% Similarity=0.585 Sum_probs=43.1
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC-CCCcccccccC
Q 021673 257 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL-SCCPLCKQELE 308 (309)
Q Consensus 257 ~~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~-~tCPlCR~~i~ 308 (309)
..++..|+||++.+.++ ..++|+|.||..||.+|++.+ .+||+||.++.
T Consensus 15 ~~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (170)
T 3hcs_A 15 LESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (170)
T ss_dssp CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcc
Confidence 35788999999999887 668999999999999999864 59999999874
No 62
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.72 E-value=5e-09 Score=80.76 Aligned_cols=46 Identities=20% Similarity=0.444 Sum_probs=40.4
Q ss_pred CCCCcccccccccccCCceEEeC-CCCcccHHHHHHHHhcC------CCCcc--cccc
Q 021673 258 NEDPECCICLAKYKEKEEVRKLP-CSHMFHLKCVDQWLRIL------SCCPL--CKQE 306 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~Lp-C~H~FH~~CI~~WL~~~------~tCPl--CR~~ 306 (309)
.++..|+||++.|.++ ..+| |+|.|++.||.+|+..+ .+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 5788999999999988 7786 99999999999999764 58999 9855
No 63
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.72 E-value=8e-09 Score=93.57 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=44.2
Q ss_pred CCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC-CCCcccccccC
Q 021673 256 PANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL-SCCPLCKQELE 308 (309)
Q Consensus 256 ~~~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~-~tCPlCR~~i~ 308 (309)
...++..|+||++-+.++ ..+||||.|++.||.+|+..+ .+||+||.++.
T Consensus 204 ~~~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CCCSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CCCcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 446788999999999999 789999999999999999864 55999999874
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=2.8e-09 Score=78.64 Aligned_cols=44 Identities=25% Similarity=0.681 Sum_probs=37.3
Q ss_pred CCCcccccccccccCCceEEeCCCCc-ccHHHHHHHHhcCCCCcccccccCC
Q 021673 259 EDPECCICLAKYKEKEEVRKLPCSHM-FHLKCVDQWLRILSCCPLCKQELER 309 (309)
Q Consensus 259 ~~~~C~ICL~~~~~~~~v~~LpC~H~-FH~~CI~~WL~~~~tCPlCR~~i~~ 309 (309)
++.+|+||++.+.+. ..+||+|. ||.+|+.+ ...||+||.++.+
T Consensus 24 ~~~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCCE---EEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 466899999998776 67899999 99999964 4899999998853
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.63 E-value=1.4e-08 Score=77.90 Aligned_cols=49 Identities=22% Similarity=0.670 Sum_probs=41.3
Q ss_pred CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhc--------CCCCcc--cccc
Q 021673 258 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI--------LSCCPL--CKQE 306 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~--------~~tCPl--CR~~ 306 (309)
.+..+|+||++++.+++.+...+|+|.||.+|+.++++. ...||. ||..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 457789999999988776666689999999999999864 237999 9987
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.57 E-value=9.8e-09 Score=76.66 Aligned_cols=43 Identities=28% Similarity=0.690 Sum_probs=37.1
Q ss_pred CCCcccccccccccCCceEEeCCCCc-ccHHHHHHHHhcCCCCcccccccC
Q 021673 259 EDPECCICLAKYKEKEEVRKLPCSHM-FHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 259 ~~~~C~ICL~~~~~~~~v~~LpC~H~-FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
++..|.||++.+.+. ..+||+|. |+.+|+.+| ..||+||.++.
T Consensus 17 ~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 60 (79)
T 2yho_A 17 EAMLCMVCCEEEINS---TFCPCGHTVCCESCAAQL----QSCPVCRSRVE 60 (79)
T ss_dssp HHTBCTTTSSSBCCE---EEETTCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred CCCEeEEeCcccCcE---EEECCCCHHHHHHHHHhc----CcCCCCCchhh
Confidence 467899999987665 78999999 999999987 49999999875
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.55 E-value=4.4e-08 Score=84.24 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=44.2
Q ss_pred CCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC-CCCcccccccC
Q 021673 256 PANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL-SCCPLCKQELE 308 (309)
Q Consensus 256 ~~~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~-~tCPlCR~~i~ 308 (309)
...++..|+||++-+.++ ..+||||.|+..||.+|+..+ .+||.||.++.
T Consensus 102 ~ip~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 102 EIPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCcHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 346889999999999998 788999999999999999864 57999999874
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.40 E-value=1.1e-07 Score=67.47 Aligned_cols=46 Identities=13% Similarity=0.187 Sum_probs=41.0
Q ss_pred CCcccccccccccCCceEEe-CCCCcccHHHHHHHHhcCCCCcccccccC
Q 021673 260 DPECCICLAKYKEKEEVRKL-PCSHMFHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 260 ~~~C~ICL~~~~~~~~v~~L-pC~H~FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
...|+||++.++++ ..+ +|||.|.++||.+|++.+.+||+++.++.
T Consensus 3 ~~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 3 HMLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp -CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred eEEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence 46799999999987 667 79999999999999998899999999874
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.39 E-value=5.5e-08 Score=91.89 Aligned_cols=44 Identities=25% Similarity=0.736 Sum_probs=39.1
Q ss_pred CCCCcccccccccccCCceEEeCCCCc-ccHHHHHHHHhcCCCCcccccccC
Q 021673 258 NEDPECCICLAKYKEKEEVRKLPCSHM-FHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~LpC~H~-FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
.++..|+||++.+.+. ..+||+|. ||..|+.+| ..||+||.++.
T Consensus 293 ~~~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp HTTCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred cCCCCCCccCCcCCce---EEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 3578999999998776 77899999 999999988 79999999885
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.25 E-value=5.2e-07 Score=81.58 Aligned_cols=50 Identities=22% Similarity=0.503 Sum_probs=41.6
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC--CCCcc--cccccC
Q 021673 257 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL--SCCPL--CKQELE 308 (309)
Q Consensus 257 ~~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~--~tCPl--CR~~i~ 308 (309)
...+..|+||++-|.++ ++.+.|||.|++.||.+|++.+ .+||. ||+.+.
T Consensus 178 ~~~el~CPIcl~~f~DP--Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 178 GKIELTCPITCKPYEAP--LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp SBCCSBCTTTSSBCSSE--EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred CceeeECcCccCcccCC--eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 35678999999999887 3445899999999999999864 57999 998763
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.10 E-value=1.7e-06 Score=66.64 Aligned_cols=45 Identities=27% Similarity=0.518 Sum_probs=36.8
Q ss_pred cccccccccccCCceEEeCCCCcccHHHHHHHHhc-CCCCcccccccC
Q 021673 262 ECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI-LSCCPLCKQELE 308 (309)
Q Consensus 262 ~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~-~~tCPlCR~~i~ 308 (309)
-|.+|--.+. ...|.+||+|+|+.+|+..|.++ .++||.|+.+|.
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 3677765544 34699999999999999999865 689999999885
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.74 E-value=2.1e-05 Score=70.53 Aligned_cols=47 Identities=23% Similarity=0.550 Sum_probs=39.5
Q ss_pred CCCcccccccccccCCceEEeC-CCCcccHHHHHHHHhcCC--CCcccccccC
Q 021673 259 EDPECCICLAKYKEKEEVRKLP-CSHMFHLKCVDQWLRILS--CCPLCKQELE 308 (309)
Q Consensus 259 ~~~~C~ICL~~~~~~~~v~~Lp-C~H~FH~~CI~~WL~~~~--tCPlCR~~i~ 308 (309)
...+|.||.+-...| ..-+ |+|.||..|+++|++.+. .||.|+.+.+
T Consensus 179 ~i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 179 AVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp TCCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 478999999999887 3344 999999999999998754 8999998753
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.97 E-value=0.013 Score=44.39 Aligned_cols=46 Identities=28% Similarity=0.615 Sum_probs=38.0
Q ss_pred CCCCcccccccccccCCceEEeCC-CCcccHHHHHHHHhcCCCCcccccccC
Q 021673 258 NEDPECCICLAKYKEKEEVRKLPC-SHMFHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~LpC-~H~FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
....-|..|+-+.. -...| .|..|..|+..-|.+...||+|+.++.
T Consensus 26 ~G~~nCKsCWf~~k-----~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLP 72 (99)
T 2ko5_A 26 LGPQFCKSCWFENK-----GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLP 72 (99)
T ss_dssp SCCCCCCSSCSCCS-----SEEECSSCEEEHHHHHHTCSSSSEETTTTEECC
T ss_pred cCcccChhhccccC-----CeeeecchhhHHHHHHHHHhhccCCcccCCcCC
Confidence 45678999996633 23457 699999999999999999999999875
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.64 E-value=0.016 Score=44.08 Aligned_cols=35 Identities=14% Similarity=0.295 Sum_probs=27.8
Q ss_pred CCCcccccccccccCCceEEeCCCCcccHHHHHHH
Q 021673 259 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQW 293 (309)
Q Consensus 259 ~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~W 293 (309)
++..|.||++++..+....-++|+|.|+..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 56889999987654444444889999999999983
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.11 E-value=0.033 Score=39.60 Aligned_cols=46 Identities=20% Similarity=0.430 Sum_probs=32.7
Q ss_pred CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCC----CCcccccc
Q 021673 258 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILS----CCPLCKQE 306 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~----tCPlCR~~ 306 (309)
..+..|.||.+. ++.+.=-.|...||..|++..|.... .||.|+..
T Consensus 10 ~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 467789999742 43222222789999999999886543 59999764
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=91.86 E-value=0.15 Score=37.84 Aligned_cols=33 Identities=24% Similarity=0.694 Sum_probs=24.7
Q ss_pred CCCCCcccccccccccCCceEEeC---CCCcccHHHHHHH
Q 021673 257 ANEDPECCICLAKYKEKEEVRKLP---CSHMFHLKCVDQW 293 (309)
Q Consensus 257 ~~~~~~C~ICL~~~~~~~~v~~Lp---C~H~FH~~CI~~W 293 (309)
...|..|.||- .+..+ ..+| |+-+||..|+.+-
T Consensus 12 ~~~D~~C~VC~-~~t~~---~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCE-VWTAE---SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTC-CCCSS---CCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCccc-ccccc---ceeccccccccccHhhcccc
Confidence 35789999994 33334 3456 6899999999996
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=88.89 E-value=0.23 Score=34.44 Aligned_cols=47 Identities=23% Similarity=0.584 Sum_probs=32.0
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhc----CCCCcccccc
Q 021673 257 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI----LSCCPLCKQE 306 (309)
Q Consensus 257 ~~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~----~~tCPlCR~~ 306 (309)
..++..|.+|... ++-+.--.|...||..|++.=+.. .=.||.|+..
T Consensus 8 ~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3567899999863 332222227889999999986543 2359999763
No 78
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=87.20 E-value=0.22 Score=33.00 Aligned_cols=45 Identities=27% Similarity=0.582 Sum_probs=29.1
Q ss_pred CcccccccccccCCceEEeCCCCcccHHHHHHHHhcC----CCCccccc
Q 021673 261 PECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL----SCCPLCKQ 305 (309)
Q Consensus 261 ~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~----~tCPlCR~ 305 (309)
+.|.||...-..++-+.=-.|...||..|++.=+... =.||.|+.
T Consensus 1 a~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 1 ARCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 3688998764333323222378999999998644432 24999975
No 79
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=87.12 E-value=0.18 Score=35.10 Aligned_cols=49 Identities=27% Similarity=0.433 Sum_probs=34.3
Q ss_pred CCCCcccccccccccCCceEEe-CCCCcccHHHHHHHHh-----cCCCCcccccc
Q 021673 258 NEDPECCICLAKYKEKEEVRKL-PCSHMFHLKCVDQWLR-----ILSCCPLCKQE 306 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~L-pC~H~FH~~CI~~WL~-----~~~tCPlCR~~ 306 (309)
+++..|++|...+.++.....- .|..-||..|+.---. .+-.||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 5677899999998655433322 3789999999865322 24569999754
No 80
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.45 E-value=0.1 Score=35.54 Aligned_cols=46 Identities=26% Similarity=0.685 Sum_probs=31.5
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC----CCCccccc
Q 021673 257 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL----SCCPLCKQ 305 (309)
Q Consensus 257 ~~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~----~tCPlCR~ 305 (309)
..++..|.+|... ++-+.--.|...||..|++.=+... =.||.|+.
T Consensus 6 ~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4578889999864 4333222378999999999755432 24999864
No 81
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=84.93 E-value=0.19 Score=36.20 Aligned_cols=50 Identities=20% Similarity=0.367 Sum_probs=33.4
Q ss_pred CCCCcccccccccccCCceEEe-CCCCcccHHHHHHHHhc----CCCCcccccccC
Q 021673 258 NEDPECCICLAKYKEKEEVRKL-PCSHMFHLKCVDQWLRI----LSCCPLCKQELE 308 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~L-pC~H~FH~~CI~~WL~~----~~tCPlCR~~i~ 308 (309)
.++..|.+|..... ++....- .|..-||..|+..-... .-.||.|+..+.
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 45667999987753 3222222 27899999999865432 345999987654
No 82
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=84.40 E-value=0.23 Score=34.47 Aligned_cols=47 Identities=21% Similarity=0.463 Sum_probs=31.5
Q ss_pred CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC----CCCccccccc
Q 021673 258 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL----SCCPLCKQEL 307 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~----~tCPlCR~~i 307 (309)
.++..|.+|... ++-+.--.|...||..|++.=+... =.||.|+...
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 567889999752 3322222278899999998655432 2499998754
No 83
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=81.55 E-value=0.23 Score=34.95 Aligned_cols=46 Identities=30% Similarity=0.614 Sum_probs=31.3
Q ss_pred CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC----CCCcccccc
Q 021673 258 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL----SCCPLCKQE 306 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~----~tCPlCR~~ 306 (309)
.++..|.||... ++-+.-=.|...||..|+..=+... =.||.|+..
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 578899999853 4322222378899999998655432 249999753
No 84
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=81.50 E-value=1.1 Score=47.11 Aligned_cols=51 Identities=16% Similarity=0.092 Sum_probs=44.9
Q ss_pred CCCCCCCcccccccccccCCceEEeCCC-CcccHHHHHHHHhcCCCCcccccccC
Q 021673 255 APANEDPECCICLAKYKEKEEVRKLPCS-HMFHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 255 ~~~~~~~~C~ICL~~~~~~~~v~~LpC~-H~FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
...+++..|+|-++-+.|+ ..+|-| |.|-+.+|.+||..+.+||.=|.++.
T Consensus 886 ~~iP~~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~ 937 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLK 937 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred cCCcHHhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCC
Confidence 3447889999999999999 889987 68999999999999999999888764
No 85
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=81.14 E-value=0.42 Score=36.95 Aligned_cols=47 Identities=21% Similarity=0.454 Sum_probs=30.9
Q ss_pred CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhc----CCCCcccc
Q 021673 258 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI----LSCCPLCK 304 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~----~~tCPlCR 304 (309)
.+++.|.||.+.=+..+-+.=-.|...||..|++..+.. .-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 578899999876322222333348899999999987642 22366553
No 86
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.88 E-value=0.28 Score=37.01 Aligned_cols=50 Identities=18% Similarity=0.332 Sum_probs=32.4
Q ss_pred CCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC----CCCccccc
Q 021673 256 PANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL----SCCPLCKQ 305 (309)
Q Consensus 256 ~~~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~----~tCPlCR~ 305 (309)
...++..|.||...-.+++-+.-=-|...||..|++.=|... =.||.|+.
T Consensus 12 ~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred hccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 345677899998774333222222278999999998544332 23999975
No 87
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=78.35 E-value=0.76 Score=34.39 Aligned_cols=47 Identities=26% Similarity=0.493 Sum_probs=32.1
Q ss_pred CCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC----CCCccccc
Q 021673 256 PANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL----SCCPLCKQ 305 (309)
Q Consensus 256 ~~~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~----~tCPlCR~ 305 (309)
...++..|.+|... ++-+.--.|.-.||..|+++=|... =.||.|+.
T Consensus 21 ~d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 21 LDDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp SSSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred cCCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccC
Confidence 34578899999854 4322222277899999998866542 24999975
No 88
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=77.78 E-value=2 Score=31.02 Aligned_cols=49 Identities=24% Similarity=0.479 Sum_probs=31.1
Q ss_pred CCCCcccccccccccCCceEEe-CCCCcccHHHHHHHHh-----cCCCCcccccc
Q 021673 258 NEDPECCICLAKYKEKEEVRKL-PCSHMFHLKCVDQWLR-----ILSCCPLCKQE 306 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~L-pC~H~FH~~CI~~WL~-----~~~tCPlCR~~ 306 (309)
+.+..-+||...+.++.....- .|..-||..|+.-=-. ..-.||.|+..
T Consensus 9 ~~~~~~C~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 9 ALVPVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCCCCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred cCCccEEEcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 3444455999988644333222 2789999999953221 24569999864
No 89
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=77.21 E-value=1.2 Score=31.90 Aligned_cols=47 Identities=23% Similarity=0.371 Sum_probs=30.2
Q ss_pred CCcccccccccccCCceEEeCCCCcccHHHHHHHH---------hcCCCCcccccc
Q 021673 260 DPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWL---------RILSCCPLCKQE 306 (309)
Q Consensus 260 ~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL---------~~~~tCPlCR~~ 306 (309)
+..-+||...+..+.-+.--.|..-||..|+.--- ..+-.||.|+..
T Consensus 15 ~~~~C~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 15 NALYCICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp TCCCSTTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCEEECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 34545999887644333322378999999985221 246789999753
No 90
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=76.89 E-value=3.4 Score=30.62 Aligned_cols=51 Identities=22% Similarity=0.356 Sum_probs=31.9
Q ss_pred CCCCCCcccccccccc-cCCceEEeC-CCCcccHHHHHHHHh--cCCCCcccccc
Q 021673 256 PANEDPECCICLAKYK-EKEEVRKLP-CSHMFHLKCVDQWLR--ILSCCPLCKQE 306 (309)
Q Consensus 256 ~~~~~~~C~ICL~~~~-~~~~v~~Lp-C~H~FH~~CI~~WL~--~~~tCPlCR~~ 306 (309)
..+++..|.||...-. +++.+..-. |.-.||..|+..=+. ..=.||.|+..
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCc
Confidence 3467889999987632 222222222 778999999985331 12349999754
No 91
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=76.86 E-value=1.6 Score=32.72 Aligned_cols=42 Identities=38% Similarity=0.812 Sum_probs=26.6
Q ss_pred CCcccccccccccCCceEEeCC-----C-CcccHHHHHHHHhc----CCCCccccccc
Q 021673 260 DPECCICLAKYKEKEEVRKLPC-----S-HMFHLKCVDQWLRI----LSCCPLCKQEL 307 (309)
Q Consensus 260 ~~~C~ICL~~~~~~~~v~~LpC-----~-H~FH~~CI~~WL~~----~~tCPlCR~~i 307 (309)
+...+||-.... ++ .+-| . .-||..|+. |.. +-.||.|+..-
T Consensus 35 e~~yCiC~~~~~-g~---MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYCLCHQVSY-GE---MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCSTTCCBCC-SC---CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEEECCCCCC-CC---EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 334449987643 42 3334 3 579999998 443 34599998754
No 92
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=76.54 E-value=1.9 Score=30.18 Aligned_cols=49 Identities=18% Similarity=0.422 Sum_probs=32.0
Q ss_pred CCCCCcccccccccccCCceEEe--CCCCcccHHHHHHHH------h----cCCCCccccc
Q 021673 257 ANEDPECCICLAKYKEKEEVRKL--PCSHMFHLKCVDQWL------R----ILSCCPLCKQ 305 (309)
Q Consensus 257 ~~~~~~C~ICL~~~~~~~~v~~L--pC~H~FH~~CI~~WL------~----~~~tCPlCR~ 305 (309)
.+....|.+|...|.+++....- .|.--||.+|+.-=- . .+-.||.|++
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~~ 65 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMA 65 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHHC
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCccC
Confidence 35678899999999877655544 488999999985321 1 1345888853
No 93
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=75.79 E-value=0.4 Score=32.97 Aligned_cols=46 Identities=26% Similarity=0.666 Sum_probs=31.3
Q ss_pred CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC----CCCcccccc
Q 021673 258 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL----SCCPLCKQE 306 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~----~tCPlCR~~ 306 (309)
.++..|.+|... ++-+.--.|...||..|++.=+... =.||.|+..
T Consensus 3 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 3 IHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 467889999864 4333222378999999999755432 349999754
No 94
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=75.02 E-value=3.3 Score=29.68 Aligned_cols=41 Identities=20% Similarity=0.472 Sum_probs=30.3
Q ss_pred CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCcccccccC
Q 021673 258 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
.....|.-|-..+.+++.+.. -+..||.+| .+|-.|+.+|.
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a--~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLA--LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEE--TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCCcCcCCeeCCCeEEEE--CCccccccc--------CCcCcCCCCcC
Confidence 456789999988887765544 478888887 66777877663
No 95
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=74.41 E-value=1 Score=29.97 Aligned_cols=43 Identities=23% Similarity=0.341 Sum_probs=29.4
Q ss_pred cccccccccccCCceEEe--CCCCcccHHHHHHHH----hcCCCCcccc
Q 021673 262 ECCICLAKYKEKEEVRKL--PCSHMFHLKCVDQWL----RILSCCPLCK 304 (309)
Q Consensus 262 ~C~ICL~~~~~~~~v~~L--pC~H~FH~~CI~~WL----~~~~tCPlCR 304 (309)
.|.+|...+.+++....- .|..-||..|+.--- ..+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 588999988765544332 377899999976321 3567799985
No 96
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=72.18 E-value=0.98 Score=35.02 Aligned_cols=46 Identities=24% Similarity=0.570 Sum_probs=29.9
Q ss_pred CCcccccccccccCCceEEeC-CCCcccHHHHHHHHhcC----CCCccccc
Q 021673 260 DPECCICLAKYKEKEEVRKLP-CSHMFHLKCVDQWLRIL----SCCPLCKQ 305 (309)
Q Consensus 260 ~~~C~ICL~~~~~~~~v~~Lp-C~H~FH~~CI~~WL~~~----~tCPlCR~ 305 (309)
-..|.+|...-.+++++..-. |...||..|+++=|... =.||.||.
T Consensus 61 C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 61 CKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CCccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 447888986522333332222 78999999998766542 35999975
No 97
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=71.57 E-value=7.4 Score=29.01 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=35.9
Q ss_pred CCCCcccccccccccCC--ceEEe--CCCCcccHHHHHHHHh-cCCCCcccccccC
Q 021673 258 NEDPECCICLAKYKEKE--EVRKL--PCSHMFHLKCVDQWLR-ILSCCPLCKQELE 308 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~--~v~~L--pC~H~FH~~CI~~WL~-~~~tCPlCR~~i~ 308 (309)
.....|.||-++..... ++.+. -|+--.|+.|.+-=.+ .++.||.|+...+
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred cCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 45689999998864332 12221 2677889999987654 5799999998764
No 98
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=71.28 E-value=2.6 Score=30.03 Aligned_cols=42 Identities=38% Similarity=0.738 Sum_probs=27.0
Q ss_pred CCCcccccccccccCCceEEeCC-----C-CcccHHHHHHHHhc----CCCCccccccc
Q 021673 259 EDPECCICLAKYKEKEEVRKLPC-----S-HMFHLKCVDQWLRI----LSCCPLCKQEL 307 (309)
Q Consensus 259 ~~~~C~ICL~~~~~~~~v~~LpC-----~-H~FH~~CI~~WL~~----~~tCPlCR~~i 307 (309)
++.-| ||-.... ++ .+-| . .-||..|+. |.. +-.||.|+..-
T Consensus 15 ~~~~C-~C~~~~~-g~---MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GE---MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SS---EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CC---EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 44455 8987642 42 3444 3 589999998 443 23599998754
No 99
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=69.77 E-value=2.5 Score=29.23 Aligned_cols=49 Identities=22% Similarity=0.470 Sum_probs=32.7
Q ss_pred CCCCccccccccccc-CCceEEeC-CCCcccHHHHHHHHh-------cCCCCcccccc
Q 021673 258 NEDPECCICLAKYKE-KEEVRKLP-CSHMFHLKCVDQWLR-------ILSCCPLCKQE 306 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~-~~~v~~Lp-C~H~FH~~CI~~WL~-------~~~tCPlCR~~ 306 (309)
.++..|.+|.....+ +..+..-. |...||..|+..=+. ..=.||.|+..
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 578899999987543 22222222 789999999986442 12359999764
No 100
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=68.88 E-value=5.3 Score=30.76 Aligned_cols=33 Identities=27% Similarity=0.578 Sum_probs=22.3
Q ss_pred CCCcccccccccc-----cCCce-EEeCCCCcccHHHHH
Q 021673 259 EDPECCICLAKYK-----EKEEV-RKLPCSHMFHLKCVD 291 (309)
Q Consensus 259 ~~~~C~ICL~~~~-----~~~~v-~~LpC~H~FH~~CI~ 291 (309)
....|.+|+..-. +++++ .=-.|+..||..|++
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 5678999997631 22223 333389999999996
No 101
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.21 E-value=5.1 Score=28.05 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=27.9
Q ss_pred CCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCcccccccC
Q 021673 259 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 259 ~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
....|.-|-+.+.+++.+. .-+..||.+| .+|-.|+.+|.
T Consensus 8 ~~~~C~~C~~~I~~~~~v~--a~~~~~H~~C--------F~C~~C~~~L~ 47 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVS--SLGKDWHKFC--------LKCERCSKTLT 47 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEE--ETTEEEETTT--------CBCSSSCCBCC
T ss_pred CCCCCcCCCCEeECCeEEE--ECCeEeeCCC--------CCCCCCCCccC
Confidence 4567888888887666543 3477888877 56777776653
No 102
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=66.55 E-value=4.2 Score=31.40 Aligned_cols=43 Identities=23% Similarity=0.493 Sum_probs=28.3
Q ss_pred CCCCcccccccccccCCceEEe---CCCCcccHHHHHHHHhcC----CCCcccccc
Q 021673 258 NEDPECCICLAKYKEKEEVRKL---PCSHMFHLKCVDQWLRIL----SCCPLCKQE 306 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~L---pC~H~FH~~CI~~WL~~~----~tCPlCR~~ 306 (309)
.++..|.+|.+ .| ++..- .|...||..|+. |... =.||.|+-.
T Consensus 13 ~~~~~C~~C~~---~G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~ 62 (107)
T 4gne_A 13 MHEDYCFQCGD---GG-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCD 62 (107)
T ss_dssp SSCSSCTTTCC---CS-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCT
T ss_pred CCCCCCCcCCC---CC-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCC
Confidence 57788999973 23 33333 266899999998 5442 248877643
No 103
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=65.84 E-value=0.41 Score=35.72 Aligned_cols=49 Identities=14% Similarity=0.477 Sum_probs=32.2
Q ss_pred CCCCcccccccccccC-CceEEeC-CCCcccHHHHHHHHhc--------CCCCcccccc
Q 021673 258 NEDPECCICLAKYKEK-EEVRKLP-CSHMFHLKCVDQWLRI--------LSCCPLCKQE 306 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~-~~v~~Lp-C~H~FH~~CI~~WL~~--------~~tCPlCR~~ 306 (309)
+++..|.+|...-.++ +.+..-- |...||..|++.=|.. .=.||.|+..
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ 72 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccch
Confidence 3577899999764332 2222222 7899999999876541 2359999764
No 104
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=65.74 E-value=6.2 Score=32.00 Aligned_cols=46 Identities=22% Similarity=0.385 Sum_probs=31.3
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHh-----------cCCCCccccc
Q 021673 257 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLR-----------ILSCCPLCKQ 305 (309)
Q Consensus 257 ~~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~-----------~~~tCPlCR~ 305 (309)
...+..|.+|.+. |+-+--=.|-..||..||++=+. ..=.||.|+.
T Consensus 60 Dg~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 3567899999753 43222223789999999997663 1235999975
No 105
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.73 E-value=6.7 Score=28.06 Aligned_cols=41 Identities=27% Similarity=0.543 Sum_probs=28.5
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCccccccc
Q 021673 257 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 307 (309)
Q Consensus 257 ~~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i 307 (309)
......|.-|-..+.+.+.+. .-+..||.+| .+|-.|+.+|
T Consensus 12 ~~~~~~C~~C~~~I~~~e~v~--a~~~~wH~~C--------F~C~~C~~~L 52 (82)
T 2co8_A 12 AGAGDLCALCGEHLYVLERLC--VNGHFFHRSC--------FRCHTCEATL 52 (82)
T ss_dssp CCSSCBCSSSCCBCCTTTBCC--BTTBCCBTTT--------CBCSSSCCBC
T ss_pred CCCCCCCcccCCCcccceEEE--ECCCeeCCCc--------CEEcCCCCCc
Confidence 345678999988887666554 3477888888 5566666655
No 106
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=65.56 E-value=2.2 Score=32.24 Aligned_cols=44 Identities=20% Similarity=0.358 Sum_probs=28.7
Q ss_pred CcccccccccccCCceEEeCCCCcccHHHHHHHHhc---CCCCccccc
Q 021673 261 PECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI---LSCCPLCKQ 305 (309)
Q Consensus 261 ~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~---~~tCPlCR~ 305 (309)
..| ||-....++.-+.-=.|.--||..|+..=+.. .-.||.|+.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 345 99887666643332237899999998753322 236999974
No 107
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=62.07 E-value=3.8 Score=28.76 Aligned_cols=44 Identities=7% Similarity=-0.110 Sum_probs=22.0
Q ss_pred CCCCcccccccccccCCceEEeCCCCcccH-HHHHHHHhcCCCCccccc
Q 021673 258 NEDPECCICLAKYKEKEEVRKLPCSHMFHL-KCVDQWLRILSCCPLCKQ 305 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~-~CI~~WL~~~~tCPlCR~ 305 (309)
.+-..|..|-..+..+. .. ..=+..|+. .|..+ .....|--|..
T Consensus 25 ~~CF~C~~C~~~L~~~~-~~-~~~g~~yC~~~cy~~--~f~~~C~~C~~ 69 (76)
T 1iml_A 25 RPCLKCEKCGKTLTSGG-HA-EHEGKPYCNHPCYSA--MFGPKGFGRGG 69 (76)
T ss_dssp TTTCBCTTTCCBCCTTT-EE-EETTEEEETTTHHHH--HSSCCCSSCCC
T ss_pred CCCCCccccCccCCCCc-eE-CcCCeEeeCHHHHHH--HhCccCCCcCC
Confidence 45567777776665542 11 122455555 35544 22344655543
No 108
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=61.36 E-value=1.1 Score=32.57 Aligned_cols=42 Identities=29% Similarity=0.780 Sum_probs=26.7
Q ss_pred cccccccccccCCceEEeC---CCCcccHHHHHHHHhcC-----CCCcccccc
Q 021673 262 ECCICLAKYKEKEEVRKLP---CSHMFHLKCVDQWLRIL-----SCCPLCKQE 306 (309)
Q Consensus 262 ~C~ICL~~~~~~~~v~~Lp---C~H~FH~~CI~~WL~~~-----~tCPlCR~~ 306 (309)
.|.+|...-.++ ..|- |...||..|++.=|... =.||.|+.+
T Consensus 28 ~C~vC~~~~d~~---~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 28 ACHLCGGRQDPD---KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp SBTTTCCCSCGG---GEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred cCCccCCCCCCc---ceeEeCCCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 567776553222 2333 78999999999766542 359999863
No 109
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.12 E-value=8 Score=27.29 Aligned_cols=39 Identities=21% Similarity=0.291 Sum_probs=26.8
Q ss_pred CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCccccccc
Q 021673 258 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 307 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i 307 (309)
.....|.-|-..+.+. .+..-+..||.+| .+|-.|+.+|
T Consensus 13 ~~~~~C~~C~~~I~~~---~~~a~~~~~H~~C--------F~C~~C~~~L 51 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGV---FVKLRDRHRHPEC--------YVCTDCGTNL 51 (79)
T ss_dssp CCCCCCSSSCCCCCSS---CEECSSCEECTTT--------TSCSSSCCCH
T ss_pred CCCCccccCCCCccCc---EEEECcceeCcCc--------CeeCCCCCCC
Confidence 4567899998887753 2334578889888 4576776654
No 110
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=60.31 E-value=1.6 Score=30.98 Aligned_cols=48 Identities=21% Similarity=0.314 Sum_probs=30.6
Q ss_pred CCCCcccccccccccCCceEE-eCCCCcccHHHHHHHH----hcCCCCcccccc
Q 021673 258 NEDPECCICLAKYKEKEEVRK-LPCSHMFHLKCVDQWL----RILSCCPLCKQE 306 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~-LpC~H~FH~~CI~~WL----~~~~tCPlCR~~ 306 (309)
.+...| ||...+.+++.... -.|..-||..|+.--- ..+-.||.|+..
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 344567 79888766643332 2378899999986431 224569999753
No 111
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=58.46 E-value=11 Score=26.65 Aligned_cols=50 Identities=22% Similarity=0.400 Sum_probs=31.8
Q ss_pred CCCCCccccccccc-ccCCceEEeC-CCCcccHHHHHHHHhc--CCCCcccccc
Q 021673 257 ANEDPECCICLAKY-KEKEEVRKLP-CSHMFHLKCVDQWLRI--LSCCPLCKQE 306 (309)
Q Consensus 257 ~~~~~~C~ICL~~~-~~~~~v~~Lp-C~H~FH~~CI~~WL~~--~~tCPlCR~~ 306 (309)
..++..|.||...- .+++++..-. |.-.||..|+..=..- .=.||.|+..
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 46788999998764 2223332222 7889999999753211 2349988753
No 112
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.23 E-value=2.2 Score=30.93 Aligned_cols=45 Identities=24% Similarity=0.531 Sum_probs=28.8
Q ss_pred CCcccccccccccCCceEEe-CCCCcccHHHHHHHHhc-----CCCCccccc
Q 021673 260 DPECCICLAKYKEKEEVRKL-PCSHMFHLKCVDQWLRI-----LSCCPLCKQ 305 (309)
Q Consensus 260 ~~~C~ICL~~~~~~~~v~~L-pC~H~FH~~CI~~WL~~-----~~tCPlCR~ 305 (309)
+..|.||...=..+ ++..- .|...||..|+++=|.. .=.||.|+.
T Consensus 26 ~c~C~vC~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 26 SCSCRVCGGKHEPN-MQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCSSSCCCCCST-TEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCCcCcCCcCCCC-CEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 34889998653233 22222 27899999999865543 225999975
No 113
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=56.39 E-value=23 Score=25.93 Aligned_cols=38 Identities=24% Similarity=0.501 Sum_probs=29.7
Q ss_pred CCCCcccccccccccCCceEEeC--CCCcccHHHHHHHHhc
Q 021673 258 NEDPECCICLAKYKEKEEVRKLP--CSHMFHLKCVDQWLRI 296 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~Lp--C~H~FH~~CI~~WL~~ 296 (309)
.....|.+|.+.+++..-+ +-| =.|.||-.|-+.-++.
T Consensus 13 ~a~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCcee-eCCCccCCeeeccccHHHHHh
Confidence 4567899999999887443 333 1799999999999875
No 114
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=56.31 E-value=6.3 Score=30.13 Aligned_cols=47 Identities=19% Similarity=0.460 Sum_probs=33.4
Q ss_pred CCcccccccccccCCceEEe--CCCCcccHHHHHHHH----h------cCCCCcccccc
Q 021673 260 DPECCICLAKYKEKEEVRKL--PCSHMFHLKCVDQWL----R------ILSCCPLCKQE 306 (309)
Q Consensus 260 ~~~C~ICL~~~~~~~~v~~L--pC~H~FH~~CI~~WL----~------~~~tCPlCR~~ 306 (309)
...|.||...|.++.....- .|..-||.+|+.-=- . .+-.||.|+..
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 45799999999776555444 378999999985321 0 34569999764
No 115
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.26 E-value=15 Score=26.54 Aligned_cols=39 Identities=26% Similarity=0.651 Sum_probs=22.7
Q ss_pred CCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCccccccc
Q 021673 259 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 307 (309)
Q Consensus 259 ~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i 307 (309)
....|.-|-..+.+.+.+ ..-+..||.+| ..|-.|+.+|
T Consensus 14 ~~~~C~~C~~~I~~~~~v--~a~~~~~H~~C--------F~C~~C~~~L 52 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERL--LANQQVFHISC--------FRCSYCNNKL 52 (91)
T ss_dssp SSCBCTTTCCBCCTTSEE--ECSSSEEETTT--------CBCTTTCCBC
T ss_pred CCCcCccCCCccCCceeE--EECCCEECCCC--------CeeCCCCCCC
Confidence 345677777776655433 34566777766 3455555544
No 116
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=53.88 E-value=12 Score=29.80 Aligned_cols=45 Identities=24% Similarity=0.478 Sum_probs=29.6
Q ss_pred CCCCCcccccccccccCCceEEe-CCCCcccHHHHHHHH------hc-----CCCCccccc
Q 021673 257 ANEDPECCICLAKYKEKEEVRKL-PCSHMFHLKCVDQWL------RI-----LSCCPLCKQ 305 (309)
Q Consensus 257 ~~~~~~C~ICL~~~~~~~~v~~L-pC~H~FH~~CI~~WL------~~-----~~tCPlCR~ 305 (309)
...+..|.+|-+. | ++.-= .|-..||.+||++=+ +. .=.|++|+.
T Consensus 54 Dg~~~~C~vC~dG---G-~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEG---G-NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCC---S-EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCC---C-eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 3567789999743 3 22211 267999999999752 22 135999965
No 117
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=53.82 E-value=5.4 Score=27.40 Aligned_cols=42 Identities=26% Similarity=0.649 Sum_probs=28.7
Q ss_pred CcccccccccccCCceEEeCCCCcccHHHHHHHHh-cCCCCccc
Q 021673 261 PECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLR-ILSCCPLC 303 (309)
Q Consensus 261 ~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~-~~~tCPlC 303 (309)
..|--|...+.+....+--.|+++|+.+| |.... .-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccch-hHHHHhhccCCcCC
Confidence 45999999986542222223899999999 55543 33679988
No 118
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=53.45 E-value=2.6 Score=28.85 Aligned_cols=40 Identities=38% Similarity=0.844 Sum_probs=25.6
Q ss_pred CCcccccccccccCCceEEeC-----CC-CcccHHHHHHHHhc----CCCCccccc
Q 021673 260 DPECCICLAKYKEKEEVRKLP-----CS-HMFHLKCVDQWLRI----LSCCPLCKQ 305 (309)
Q Consensus 260 ~~~C~ICL~~~~~~~~v~~Lp-----C~-H~FH~~CI~~WL~~----~~tCPlCR~ 305 (309)
+...+||-... .++ .+- |. .-||.+|+. |.. +-.||.|+.
T Consensus 8 e~~yC~C~~~~-~g~---mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYCLCHQVS-YGE---MIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEETTTTEEC-CSE---EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEEECCCCC-CCC---eeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 44444998764 342 333 43 589999998 443 235999975
No 119
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=53.06 E-value=2.5 Score=28.94 Aligned_cols=41 Identities=34% Similarity=0.796 Sum_probs=25.4
Q ss_pred CCCcccccccccccCCceEEeCC-----C-CcccHHHHHHHHhcC----CCCccccc
Q 021673 259 EDPECCICLAKYKEKEEVRKLPC-----S-HMFHLKCVDQWLRIL----SCCPLCKQ 305 (309)
Q Consensus 259 ~~~~C~ICL~~~~~~~~v~~LpC-----~-H~FH~~CI~~WL~~~----~tCPlCR~ 305 (309)
++...+||.... .+ ..+-| . .-||..|+. |... -.||.|+.
T Consensus 8 ~e~~~C~C~~~~-~g---~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 8 NEPTYCLCHQVS-YG---EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp -CCEETTTTEEC-CS---EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCEEECCCcC-CC---CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 344455998764 24 23344 3 579999998 5432 35999975
No 120
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=53.05 E-value=2.7 Score=29.62 Aligned_cols=47 Identities=17% Similarity=0.491 Sum_probs=29.3
Q ss_pred CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHh---cCCCCccccc
Q 021673 258 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLR---ILSCCPLCKQ 305 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~---~~~tCPlCR~ 305 (309)
.+...| ||-..+..+.-+.--.|..-||..|+.---. .+-.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 345556 9988765332222223789999999864221 2356999975
No 121
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=50.96 E-value=2.7 Score=29.74 Aligned_cols=44 Identities=25% Similarity=0.620 Sum_probs=27.2
Q ss_pred cccccccccccCCceEEeC-CCCcccHHHHHHHHhc-----CCCCcccccc
Q 021673 262 ECCICLAKYKEKEEVRKLP-CSHMFHLKCVDQWLRI-----LSCCPLCKQE 306 (309)
Q Consensus 262 ~C~ICL~~~~~~~~v~~Lp-C~H~FH~~CI~~WL~~-----~~tCPlCR~~ 306 (309)
.|.+|...-..+ ++..-- |...||..|++.=|.. .=.||.|+.+
T Consensus 20 ~C~~C~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCC-CEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 567777542222 222222 7899999999865543 2259999753
No 122
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.76 E-value=14 Score=25.32 Aligned_cols=39 Identities=18% Similarity=0.345 Sum_probs=21.9
Q ss_pred CCccccccccccc--CCceEEeCCCCcccHHHHHHHHhcCCCCccccccc
Q 021673 260 DPECCICLAKYKE--KEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 307 (309)
Q Consensus 260 ~~~C~ICL~~~~~--~~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i 307 (309)
...|.-|-..+.+ ++++ +..-+..||.+| .+|-.|+.+|
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-~~a~~~~wH~~C--------F~C~~C~~~L 45 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKY-ISFEERQWHNDC--------FNCKKCSLSL 45 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSC-EECSSCEECTTT--------CBCSSSCCBC
T ss_pred CCCCcCCCccccCCCCcce-EEECCcccCccc--------CEeccCCCcC
Confidence 4567777776664 2222 223466777766 4566666554
No 123
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=47.87 E-value=7.7 Score=27.81 Aligned_cols=47 Identities=17% Similarity=0.353 Sum_probs=29.6
Q ss_pred CCCcccccccccccCCceEEe--CCCCcccHHHHHHHHh---------cCCCCcccccc
Q 021673 259 EDPECCICLAKYKEKEEVRKL--PCSHMFHLKCVDQWLR---------ILSCCPLCKQE 306 (309)
Q Consensus 259 ~~~~C~ICL~~~~~~~~v~~L--pC~H~FH~~CI~~WL~---------~~~tCPlCR~~ 306 (309)
+...| ||-.....+.-+.-= .|..-||..|+.-=-+ .+-.||.|+..
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 34455 898875444333222 4888999999853211 24569999864
No 124
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=46.84 E-value=4.5 Score=35.42 Aligned_cols=47 Identities=23% Similarity=0.583 Sum_probs=25.6
Q ss_pred CCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC-----CCCcccccc
Q 021673 260 DPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL-----SCCPLCKQE 306 (309)
Q Consensus 260 ~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~-----~tCPlCR~~ 306 (309)
+..|.+|...=..++-+.-=.|...||..|+++=|... =.||.|+.+
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 34688997652223222111278999999999655431 249999753
No 125
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=46.13 E-value=16 Score=34.23 Aligned_cols=46 Identities=20% Similarity=0.446 Sum_probs=29.8
Q ss_pred CCcccccccccccCCceEEeCCCCc--ccHHHHHHHHhc--CCCCccccccc
Q 021673 260 DPECCICLAKYKEKEEVRKLPCSHM--FHLKCVDQWLRI--LSCCPLCKQEL 307 (309)
Q Consensus 260 ~~~C~ICL~~~~~~~~v~~LpC~H~--FH~~CI~~WL~~--~~tCPlCR~~i 307 (309)
...|++-...+..+ +|-..|.|. |=.+=+-+.... .-.||+|.+.+
T Consensus 249 SL~CPlS~~ri~~P--vRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 249 SLQCPISYTRMKYP--SKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDI 298 (371)
T ss_dssp ESBCTTTSSBCSSE--EEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBC
T ss_pred eecCCCcccccccc--CcCCcCCCcceECHHHHHHHhhcCCceeCCCCCccc
Confidence 46789888776554 677889998 443322222222 35699998875
No 126
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=46.00 E-value=2.9 Score=32.05 Aligned_cols=44 Identities=16% Similarity=0.353 Sum_probs=27.1
Q ss_pred cccccccccccCCceEEeCCCCcccHHHHHHHHhc----CCCCccccc
Q 021673 262 ECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI----LSCCPLCKQ 305 (309)
Q Consensus 262 ~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~----~~tCPlCR~ 305 (309)
.|.+|...-.+...+.--.|...||..|+++=+.. .-.||.|+.
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 57777765333222222227899999999865543 234888865
No 127
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=45.93 E-value=23 Score=25.43 Aligned_cols=40 Identities=20% Similarity=0.345 Sum_probs=27.0
Q ss_pred CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCcccccccC
Q 021673 258 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
.....|.-|-+.+.+ +. +..-+..||.+| ..|-.|+.+|.
T Consensus 23 ~~~~~C~~C~~~I~~-~~--~~a~~~~~H~~C--------F~C~~C~~~L~ 62 (89)
T 1x64_A 23 QRMPLCDKCGSGIVG-AV--VKARDKYRHPEC--------FVCADCNLNLK 62 (89)
T ss_dssp CSCCBCTTTCCBCCS-CC--EESSSCEECTTT--------CCCSSSCCCTT
T ss_pred CcCCCcccCCCEecc-cE--EEECCceECccC--------CEecCCCCCCC
Confidence 445678888888775 22 334678888887 56777776653
No 128
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.69 E-value=19 Score=24.59 Aligned_cols=37 Identities=14% Similarity=0.131 Sum_probs=18.0
Q ss_pred CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhc
Q 021673 258 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI 296 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~ 296 (309)
.+-..|..|-..+.. +.. ...=+..|+..|-.+-+..
T Consensus 31 ~~CF~C~~C~~~L~~-~~~-~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 31 VGCFVCSTCRAQLRG-QHF-YAVERRAYCEGCYVATLES 67 (72)
T ss_dssp TTTCBCSSSCCBCTT-SCE-EESSSCEEEHHHHHHHHHT
T ss_pred ccCCcccccCCcCCc-CcC-EeeCCeEECHHHHHHHHcc
Confidence 344566666655532 111 1223456666666555543
No 129
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=44.80 E-value=2.6 Score=29.54 Aligned_cols=47 Identities=26% Similarity=0.433 Sum_probs=27.5
Q ss_pred CCCcccccccccccCCceEEe--CCCCcccHHHHHHH---Hh-----cCCCCccccc
Q 021673 259 EDPECCICLAKYKEKEEVRKL--PCSHMFHLKCVDQW---LR-----ILSCCPLCKQ 305 (309)
Q Consensus 259 ~~~~C~ICL~~~~~~~~v~~L--pC~H~FH~~CI~~W---L~-----~~~tCPlCR~ 305 (309)
++..-+||-....++.-+.-= .|..-||..|+.-- .+ .+-.||.||.
T Consensus 8 e~~v~C~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 8 EAKVRCICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp SCEECCTTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCCEEeECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 333445897766665422211 27779999998321 01 1356999984
No 130
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=44.58 E-value=13 Score=28.63 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=21.6
Q ss_pred Cccccccccccc------CCc-eEEeCCCCcccHHHHHHH
Q 021673 261 PECCICLAKYKE------KEE-VRKLPCSHMFHLKCVDQW 293 (309)
Q Consensus 261 ~~C~ICL~~~~~------~~~-v~~LpC~H~FH~~CI~~W 293 (309)
..|.+|+..-.. +++ +.=-.|...||..|++..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 468999876421 122 222338899999999865
No 131
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=44.34 E-value=7.8 Score=27.52 Aligned_cols=49 Identities=24% Similarity=0.536 Sum_probs=31.4
Q ss_pred CCCCcccccccccccCCceEEe-CCCCcccHHHHHHHHh-----cCCCCcccccc
Q 021673 258 NEDPECCICLAKYKEKEEVRKL-PCSHMFHLKCVDQWLR-----ILSCCPLCKQE 306 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~L-pC~H~FH~~CI~~WL~-----~~~tCPlCR~~ 306 (309)
+.+..-+||-..+.++.....- .|.--||..|+.---. ..-.||.|+..
T Consensus 7 ~~~~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 7 ATVPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CCCCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred CCCeeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 4556677999877544333222 2789999999954321 23569999753
No 132
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.18 E-value=16 Score=26.34 Aligned_cols=39 Identities=18% Similarity=0.427 Sum_probs=25.1
Q ss_pred CCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCcccccccC
Q 021673 259 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 259 ~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
....|.-|-..+. ++.+ ..-+..||.+| ..|-.|+.+|.
T Consensus 24 ~~~~C~~C~~~I~-~~~v--~a~~~~~H~~C--------F~C~~C~~~L~ 62 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFL--VALGKSWHPEE--------FNCAHCKNTMA 62 (90)
T ss_dssp CCCBBSSSCCBCC-SCEE--EETTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCccCCCEec-ceEE--EECCccccccC--------CccCCCCCCCC
Confidence 4567888888774 3322 33577888877 56777776653
No 133
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.06 E-value=21 Score=24.65 Aligned_cols=40 Identities=20% Similarity=0.597 Sum_probs=24.3
Q ss_pred CCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCccccccc
Q 021673 259 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 307 (309)
Q Consensus 259 ~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i 307 (309)
....|+-|-..+..++.+.. .-+..||.+| .+|-.|+.++
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~-a~~~~~H~~C--------F~C~~C~~~L 49 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVN-SNGELYHEQC--------FVCAQCFQQF 49 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEE-ETTEEECTTT--------CCCTTTCCCC
T ss_pred CCCCchhcCCccCCCceEEE-eCccEecccc--------CeECCCCCCC
Confidence 45678888777765443321 2466777776 4566666554
No 134
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.67 E-value=21 Score=24.13 Aligned_cols=26 Identities=15% Similarity=0.333 Sum_probs=11.8
Q ss_pred CcccccccccccCCceEEeCCCCcccHHH
Q 021673 261 PECCICLAKYKEKEEVRKLPCSHMFHLKC 289 (309)
Q Consensus 261 ~~C~ICL~~~~~~~~v~~LpC~H~FH~~C 289 (309)
..|.-|-..+.+. . +..-+..||.+|
T Consensus 6 ~~C~~C~~~I~~~-~--~~a~~~~~H~~C 31 (70)
T 2d8z_A 6 SGCVQCKKPITTG-G--VTYREQPWHKEC 31 (70)
T ss_dssp CBCSSSCCBCCSS-E--EESSSSEEETTT
T ss_pred CCCcccCCeeccc-e--EEECccccCCCC
Confidence 3455555555432 1 222345555554
No 135
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=43.62 E-value=5.2 Score=30.76 Aligned_cols=21 Identities=43% Similarity=0.901 Sum_probs=13.4
Q ss_pred CCCcccHHHHHHHHhcCCCCcccccc
Q 021673 281 CSHMFHLKCVDQWLRILSCCPLCKQE 306 (309)
Q Consensus 281 C~H~FH~~CI~~WL~~~~tCPlCR~~ 306 (309)
||+.|. +=+.....||.||+.
T Consensus 73 CG~~F~-----~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 73 CGFVFK-----AEINIPSRCPKCKSE 93 (105)
T ss_dssp TCCBCC-----CCSSCCSSCSSSCCC
T ss_pred CcCeec-----ccCCCCCCCcCCCCC
Confidence 677771 112345789999974
No 136
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=42.99 E-value=19 Score=33.57 Aligned_cols=46 Identities=20% Similarity=0.400 Sum_probs=30.2
Q ss_pred CCcccccccccccCCceEEeCCCCc--ccHHHHHHHHhc--CCCCccccccc
Q 021673 260 DPECCICLAKYKEKEEVRKLPCSHM--FHLKCVDQWLRI--LSCCPLCKQEL 307 (309)
Q Consensus 260 ~~~C~ICL~~~~~~~~v~~LpC~H~--FH~~CI~~WL~~--~~tCPlCR~~i 307 (309)
...|++-...++.+ +|-..|.|. |=.+=.-+.... .-.||+|.+.+
T Consensus 215 SL~CPlS~~ri~~P--~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~ 264 (360)
T 4fo9_A 215 SLMCPLGKMRLTIP--CRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKA 264 (360)
T ss_dssp ESBCTTTCSBCSSE--EEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBC
T ss_pred eeeCCCccceeccC--CcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCccc
Confidence 45799888776554 677889998 544333332222 35699999875
No 137
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.45 E-value=17 Score=25.28 Aligned_cols=39 Identities=18% Similarity=0.388 Sum_probs=24.3
Q ss_pred CCccccccccccc--CCceEEeCCCCcccHHHHHHHHhcCCCCccccccc
Q 021673 260 DPECCICLAKYKE--KEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 307 (309)
Q Consensus 260 ~~~C~ICL~~~~~--~~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i 307 (309)
...|+-|-..+.+ +++. +..-+..||.+| .+|-.|+.+|
T Consensus 5 ~~~C~~C~~~I~~~g~~~~-~~a~~~~wH~~C--------F~C~~C~~~L 45 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKF-ICFQDSQWHSEC--------FNCGKCSVSL 45 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCE-EEETTEEEEGGG--------CBCTTTCCBC
T ss_pred CCCCccCCCcccCCCCcee-EEECCcccCccc--------CChhhCCCcC
Confidence 4568888877775 2222 233567888877 4566666655
No 138
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.15 E-value=21 Score=24.26 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=14.1
Q ss_pred CcccccccccccCCceEEeCCCCcccHHH
Q 021673 261 PECCICLAKYKEKEEVRKLPCSHMFHLKC 289 (309)
Q Consensus 261 ~~C~ICL~~~~~~~~v~~LpC~H~FH~~C 289 (309)
..|.-|-..+.+++++ +..-+..||.+|
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~C 33 (72)
T 1wyh_A 6 SGCSACGETVMPGSRK-LEYGGQTWHEHC 33 (72)
T ss_dssp CBCSSSCCBCCSSSCE-ECSTTCCEETTT
T ss_pred CCCccCCCccccCccE-EEECccccCccc
Confidence 4566666665543222 122455666655
No 139
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.13 E-value=22 Score=25.01 Aligned_cols=37 Identities=22% Similarity=0.383 Sum_probs=19.1
Q ss_pred CCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCccccccc
Q 021673 260 DPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 307 (309)
Q Consensus 260 ~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i 307 (309)
...|.-|-..+. ++.+ ..-+..||.+| .+|-.|+.+|
T Consensus 15 ~~~C~~C~~~I~-~~~v--~a~~~~~H~~C--------F~C~~C~~~L 51 (79)
T 2cor_A 15 KYICQKCHAIID-EQPL--IFKNDPYHPDH--------FNCANCGKEL 51 (79)
T ss_dssp CCBCTTTCCBCC-SCCC--CCSSSCCCTTT--------SBCSSSCCBC
T ss_pred CCCCccCCCEec-ceEE--EECcceeCCCC--------CEeCCCCCcc
Confidence 445666666655 2222 22355666655 4555555554
No 140
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.08 E-value=18 Score=24.57 Aligned_cols=38 Identities=18% Similarity=0.379 Sum_probs=19.6
Q ss_pred CcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCccccccc
Q 021673 261 PECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 307 (309)
Q Consensus 261 ~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i 307 (309)
..|.-|-..+.+++.+.. .-+..||.+| .+|-.|+.++
T Consensus 6 ~~C~~C~~~I~~~~~~~~-a~~~~~H~~C--------F~C~~C~~~L 43 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKME-YKGSSWHETC--------FICHRCQQPI 43 (72)
T ss_dssp CCBSSSCCCCCSSSCEEE-ETTEEEETTT--------TCCSSSCCCC
T ss_pred CCCccCCCcccCCceEEE-ECcCeecccC--------CcccccCCcc
Confidence 456666666665432221 2355666665 3455555544
No 141
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.13 E-value=17 Score=24.72 Aligned_cols=26 Identities=15% Similarity=0.356 Sum_probs=11.6
Q ss_pred CcccccccccccCCceEEeCCCCcccHHH
Q 021673 261 PECCICLAKYKEKEEVRKLPCSHMFHLKC 289 (309)
Q Consensus 261 ~~C~ICL~~~~~~~~v~~LpC~H~FH~~C 289 (309)
..|.-|-+.+.+ +.+ ..-+..||.+|
T Consensus 6 ~~C~~C~~~I~~-~~~--~a~~~~~H~~C 31 (70)
T 2d8x_A 6 SGCHQCGEFIIG-RVI--KAMNNSWHPEC 31 (70)
T ss_dssp SBCSSSCCBCCS-CCE--EETTEEECTTT
T ss_pred CcCccCCCEecc-eEE--EECcccccccC
Confidence 445555555442 222 12345555555
No 142
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=40.81 E-value=5.4 Score=27.48 Aligned_cols=41 Identities=32% Similarity=0.814 Sum_probs=25.8
Q ss_pred CCcccccccccccCCceEEeC-----CC-CcccHHHHHHHHhc----CCCCcccccc
Q 021673 260 DPECCICLAKYKEKEEVRKLP-----CS-HMFHLKCVDQWLRI----LSCCPLCKQE 306 (309)
Q Consensus 260 ~~~C~ICL~~~~~~~~v~~Lp-----C~-H~FH~~CI~~WL~~----~~tCPlCR~~ 306 (309)
+...++|-... .++ .+- |. .-||.+|+. |.. +-.||.|+..
T Consensus 10 e~~yC~C~~~~-~g~---MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 10 EPTYCLCNQVS-YGE---MIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp CCEETTTTEEC-CSE---EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHTC
T ss_pred CCcEEECCCCC-CCC---eeeeeCCCCCcccEecccCC--cCcCCCCCEECcCcccC
Confidence 34444998763 342 333 33 789999998 433 3459999764
No 143
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.20 E-value=23 Score=24.82 Aligned_cols=40 Identities=23% Similarity=0.488 Sum_probs=25.5
Q ss_pred CCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCcccccccC
Q 021673 260 DPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 260 ~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
...|.-|-..+.+++.+. ..=+..||.+| .+|-.|+.+|.
T Consensus 15 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~C--------F~C~~C~~~L~ 54 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNV-EYKGTVWHKDC--------FTCSNCKQVIG 54 (82)
T ss_dssp SCBCSSSCCBCCSSSCEE-ECSSCEEETTT--------CCCSSSCCCCT
T ss_pred CCcCccCCcccccCceEE-EECcccccccc--------CchhhCCCccC
Confidence 357888888777655432 23467788777 45666766653
No 144
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=39.50 E-value=1.7 Score=33.72 Aligned_cols=46 Identities=17% Similarity=0.417 Sum_probs=29.2
Q ss_pred CcccccccccccCCceEEeCCCCcccHHHHHHHHhcC----CCCcccccc
Q 021673 261 PECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL----SCCPLCKQE 306 (309)
Q Consensus 261 ~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~----~tCPlCR~~ 306 (309)
..|.||...-.+++-+.=-.|...||..|+++=|... =.||.|+..
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWEL 108 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHH
T ss_pred CccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccch
Confidence 3688887764344322222278999999998644432 239998754
No 145
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=39.41 E-value=12 Score=29.94 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=24.3
Q ss_pred CCCCcccccccccc--cCCceEEeCCCCcccHHHHH
Q 021673 258 NEDPECCICLAKYK--EKEEVRKLPCSHMFHLKCVD 291 (309)
Q Consensus 258 ~~~~~C~ICL~~~~--~~~~v~~LpC~H~FH~~CI~ 291 (309)
.++..|.+|...|. .+....-..|+|.+|..|=.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 56889999999993 23233333489999999844
No 146
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=37.71 E-value=3.6 Score=25.08 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=12.7
Q ss_pred CCCcccccccccccCCc
Q 021673 259 EDPECCICLAKYKEKEE 275 (309)
Q Consensus 259 ~~~~C~ICL~~~~~~~~ 275 (309)
+...|+||+.++...+.
T Consensus 4 EGFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADE 20 (34)
T ss_dssp EEEECTTTCCEESSHHH
T ss_pred cccCCcHHHHHcCCHHH
Confidence 45789999988876543
No 147
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=37.61 E-value=10 Score=26.72 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=15.3
Q ss_pred CCcccccccccccCCceEEeCCCCcccHHH
Q 021673 260 DPECCICLAKYKEKEEVRKLPCSHMFHLKC 289 (309)
Q Consensus 260 ~~~C~ICL~~~~~~~~v~~LpC~H~FH~~C 289 (309)
...|..|-..+.+++.+. .-+..||.+|
T Consensus 7 ~~~C~~C~~~I~~~~~~~--a~~~~~H~~C 34 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQ--CDGRSFHRCC 34 (81)
T ss_dssp -CBCSSSCCBCSSTTEEE--ETTEEEESSS
T ss_pred CCcCcCcCccccCceeEE--eCCccccccc
Confidence 445666766665554332 2456666665
No 148
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.49 E-value=19 Score=24.38 Aligned_cols=11 Identities=18% Similarity=0.489 Sum_probs=5.4
Q ss_pred Ccccccccccc
Q 021673 261 PECCICLAKYK 271 (309)
Q Consensus 261 ~~C~ICL~~~~ 271 (309)
..|.-|-..+.
T Consensus 6 ~~C~~C~~~I~ 16 (69)
T 2cur_A 6 SGCVKCNKAIT 16 (69)
T ss_dssp CCCSSSCCCCC
T ss_pred CCCcccCCEeC
Confidence 34555555443
No 149
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=36.19 E-value=32 Score=25.18 Aligned_cols=36 Identities=17% Similarity=0.344 Sum_probs=24.8
Q ss_pred CCCCcccccccccccCCceEE-eCCCCcccHHHHHHH
Q 021673 258 NEDPECCICLAKYKEKEEVRK-LPCSHMFHLKCVDQW 293 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~-LpC~H~FH~~CI~~W 293 (309)
.+...|.+|-..|..-..-.- -.|+++|+.+|....
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 566789999999875421111 128999999997653
No 150
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=35.88 E-value=31 Score=26.68 Aligned_cols=39 Identities=21% Similarity=0.474 Sum_probs=29.4
Q ss_pred CCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCccccccc
Q 021673 259 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 307 (309)
Q Consensus 259 ~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i 307 (309)
....|.-|-..+.+...+. .-+..||.+| .+|-.|+.+|
T Consensus 60 ~~~~C~~C~~~I~~~~~v~--a~~~~wH~~C--------F~C~~C~~~L 98 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRFLLY--AMDSYWHSRC--------LKCSSCQAQL 98 (123)
T ss_dssp SCSBBSSSSSBCCSSSEEE--ETTEEEETTT--------SBCTTTCCBG
T ss_pred cCCcCcCCCCCcCCcEEEE--eCCcEEcccc--------cCcCcCCCcc
Confidence 4568999999888654333 3588999998 6788888776
No 151
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=35.84 E-value=22 Score=23.73 Aligned_cols=37 Identities=16% Similarity=0.408 Sum_probs=21.5
Q ss_pred CCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCccccccc
Q 021673 260 DPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 307 (309)
Q Consensus 260 ~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i 307 (309)
...|+-|-..+. ++ .+..-+..||.+| .+|-.|+.++
T Consensus 5 ~~~C~~C~~~I~-~~--~~~a~~~~~H~~C--------F~C~~C~~~L 41 (66)
T 1nyp_A 5 VPICGACRRPIE-GR--VVNAMGKQWHVEH--------FVCAKCEKPF 41 (66)
T ss_dssp CCEETTTTEECC-SC--EECCTTSBEETTT--------CBCTTTCCBC
T ss_pred CCCCcccCCEec-ce--EEEECccccccCc--------CEECCCCCCC
Confidence 346777777666 32 2233466777766 4566666554
No 152
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=35.19 E-value=15 Score=27.90 Aligned_cols=13 Identities=31% Similarity=0.807 Sum_probs=10.8
Q ss_pred cccHHHHHHHHhc
Q 021673 284 MFHLKCVDQWLRI 296 (309)
Q Consensus 284 ~FH~~CI~~WL~~ 296 (309)
-||+.|+.+|++.
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3899999999853
No 153
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=35.00 E-value=15 Score=27.83 Aligned_cols=12 Identities=33% Similarity=0.897 Sum_probs=10.5
Q ss_pred cccHHHHHHHHh
Q 021673 284 MFHLKCVDQWLR 295 (309)
Q Consensus 284 ~FH~~CI~~WL~ 295 (309)
-||+.|+.+|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 389999999986
No 154
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=34.94 E-value=33 Score=28.23 Aligned_cols=36 Identities=28% Similarity=0.525 Sum_probs=25.8
Q ss_pred CCCCCcccccccccccCCceEEeC---CCCcccHHHHHHHHhc
Q 021673 257 ANEDPECCICLAKYKEKEEVRKLP---CSHMFHLKCVDQWLRI 296 (309)
Q Consensus 257 ~~~~~~C~ICL~~~~~~~~v~~Lp---C~H~FH~~CI~~WL~~ 296 (309)
...+..|.||-+ |.++..-. |...|+.+||+..+..
T Consensus 76 DG~~~yC~wC~~----Gg~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 76 DGYQSYCTICCG----GREVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp TSSBSSCTTTSC----CSEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CCCcceeeEecC----CCeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 356778999974 33443333 7899999999998744
No 155
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=33.56 E-value=30 Score=24.23 Aligned_cols=33 Identities=24% Similarity=0.674 Sum_probs=26.0
Q ss_pred CCCCCcccccccccccCCceEEeCC-CCcccHHHHHHH
Q 021673 257 ANEDPECCICLAKYKEKEEVRKLPC-SHMFHLKCVDQW 293 (309)
Q Consensus 257 ~~~~~~C~ICL~~~~~~~~v~~LpC-~H~FH~~CI~~W 293 (309)
.++..-|.||.++ ..++-+.| +-.|+..|..+-
T Consensus 5 ~ee~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 5 SSGLPWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCCSSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred CcCCCeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence 4678899999765 55788888 789999997664
No 156
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=33.51 E-value=29 Score=23.27 Aligned_cols=40 Identities=20% Similarity=0.621 Sum_probs=27.1
Q ss_pred CCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCccccccc
Q 021673 259 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 307 (309)
Q Consensus 259 ~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i 307 (309)
....|.-|-..+..++.+.. .=+..||.+|. .|-.|+.++
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF--------~C~~C~~~L 49 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQF 49 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEE-ETTEEEETTTS--------SCTTTCCCC
T ss_pred CCccchhcCccccCCceEEE-eCcCeeCcCCC--------cccCCCCCC
Confidence 45678889888877654432 34677888884 566676655
No 157
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=30.00 E-value=11 Score=24.55 Aligned_cols=12 Identities=25% Similarity=0.603 Sum_probs=7.7
Q ss_pred Cccccccccccc
Q 021673 261 PECCICLAKYKE 272 (309)
Q Consensus 261 ~~C~ICL~~~~~ 272 (309)
.+|.+|-..|.+
T Consensus 5 y~C~vCGyvyd~ 16 (46)
T 6rxn_A 5 YVCNVCGYEYDP 16 (46)
T ss_dssp EEETTTCCEECG
T ss_pred EECCCCCeEEeC
Confidence 367777766654
No 158
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=29.57 E-value=36 Score=23.83 Aligned_cols=34 Identities=18% Similarity=0.389 Sum_probs=23.2
Q ss_pred CCcccccccccccCCceEEe-CCCCcccHHHHHHH
Q 021673 260 DPECCICLAKYKEKEEVRKL-PCSHMFHLKCVDQW 293 (309)
Q Consensus 260 ~~~C~ICL~~~~~~~~v~~L-pC~H~FH~~CI~~W 293 (309)
+..|.+|...|.--..-.-- .||++|+.+|-...
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 45899999998754211111 28999999997643
No 159
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=29.54 E-value=16 Score=21.30 Aligned_cols=27 Identities=26% Similarity=0.547 Sum_probs=20.1
Q ss_pred CcccccccccccCCceEEeCCCCcccHHH
Q 021673 261 PECCICLAKYKEKEEVRKLPCSHMFHLKC 289 (309)
Q Consensus 261 ~~C~ICL~~~~~~~~v~~LpC~H~FH~~C 289 (309)
..|+.|-...-..+.+. .=+..||+.|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--CLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--SSSSCCCGGG
T ss_pred CcCCccCCEEecceeEE--ECCeEecccC
Confidence 47999988877665443 3478999988
No 160
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=29.40 E-value=9.7 Score=24.97 Aligned_cols=45 Identities=18% Similarity=0.522 Sum_probs=27.4
Q ss_pred CcccccccccccCCceEEeCCCCcccHHHHHHHHh---cCCCCccccc
Q 021673 261 PECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLR---ILSCCPLCKQ 305 (309)
Q Consensus 261 ~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~---~~~tCPlCR~ 305 (309)
..=+||...+..+.-+.--.|+.-||..|+.-=-. .+-.||.|+.
T Consensus 4 ~~~C~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 4 LVTCFCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp CBCSTTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred CeEEEeCCcCCCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 34457877655333222223789999999863321 2456999975
No 161
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=29.00 E-value=23 Score=27.20 Aligned_cols=39 Identities=13% Similarity=0.259 Sum_probs=23.1
Q ss_pred CCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHh
Q 021673 256 PANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLR 295 (309)
Q Consensus 256 ~~~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~ 295 (309)
-..+-..|..|-..+..++..... =+..||..|..+.+.
T Consensus 32 ~H~~CF~C~~C~~~L~~g~~f~~~-~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 32 YHLECFKCAACQKHFSVGDRYLLI-NSDIVCEQDIYEWTK 70 (123)
T ss_dssp CCTTTCBCTTTCCBCCTTCEEEEC-SSSEEEGGGHHHHHH
T ss_pred cccccCccccCCCCCCCCCcEEee-CCEEEcHHHhHHHhc
Confidence 344566777777777555433322 356677777666554
No 162
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.71 E-value=21 Score=25.06 Aligned_cols=45 Identities=29% Similarity=0.460 Sum_probs=25.5
Q ss_pred CCCcccccccccccCCceEEeCCC---CcccHHHHHHHHhc----CCCCcccccc
Q 021673 259 EDPECCICLAKYKEKEEVRKLPCS---HMFHLKCVDQWLRI----LSCCPLCKQE 306 (309)
Q Consensus 259 ~~~~C~ICL~~~~~~~~v~~LpC~---H~FH~~CI~~WL~~----~~tCPlCR~~ 306 (309)
++..-+||-.. ..++-+.--.|. .-||.+|+. |.. +-.||.|+..
T Consensus 4 ~~~~yC~C~~~-~~g~MI~CD~cdC~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 4 GSSGYCICNQV-SYGEMVGCDNQDCPIEWFHYGCVG--LTEAPKGKWYCPQCTAA 55 (70)
T ss_dssp SCCCCSTTSCC-CCSSEECCSCTTCSCCCEEHHHHT--CSSCCSSCCCCHHHHHH
T ss_pred CCCeEEEcCCC-CCCCEeEeCCCCCCccCCcccccc--cCcCCCCCEECCCCCcc
Confidence 34444578776 234222211132 689999997 332 2359999754
No 163
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.60 E-value=36 Score=23.40 Aligned_cols=36 Identities=22% Similarity=0.328 Sum_probs=18.1
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHH
Q 021673 257 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQW 293 (309)
Q Consensus 257 ~~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~W 293 (309)
..+-..|..|-..+.+++.... .=+..||..|-.+-
T Consensus 28 H~~CF~C~~C~~~L~~~~~f~~-~~~~~yC~~C~~~~ 63 (73)
T 1wig_A 28 HPSCALCVRCGQMFAEGEEMYL-QGSSIWHPACRQAA 63 (73)
T ss_dssp CTTTSCCSSSCCCCCSSCCCEE-ETTEEECTTHHHHT
T ss_pred CCCcCEeCCCCCCCCCCCeeEe-eCCEEEChHHChHh
Confidence 3455666666666654332221 12445566665543
No 164
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=28.19 E-value=12 Score=21.70 Aligned_cols=11 Identities=36% Similarity=1.014 Sum_probs=7.3
Q ss_pred CCCCccccccc
Q 021673 297 LSCCPLCKQEL 307 (309)
Q Consensus 297 ~~tCPlCR~~i 307 (309)
+.+||+||...
T Consensus 3 k~~CpvCk~q~ 13 (28)
T 2jvx_A 3 DFCCPKCQYQA 13 (28)
T ss_dssp CEECTTSSCEE
T ss_pred cccCccccccC
Confidence 34688887654
No 165
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.76 E-value=29 Score=24.20 Aligned_cols=37 Identities=14% Similarity=0.290 Sum_probs=16.5
Q ss_pred CCCCcccccccccccCCceEEeCCCCcccHHHHHHHH
Q 021673 258 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWL 294 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL 294 (309)
.+-..|..|-..+.+++......=+..||..|-.+-+
T Consensus 39 ~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~ 75 (81)
T 1x6a_A 39 PECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVV 75 (81)
T ss_dssp TTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHH
T ss_pred cccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHh
Confidence 3445555555555443332211233455555554433
No 166
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.68 E-value=36 Score=23.56 Aligned_cols=36 Identities=22% Similarity=0.548 Sum_probs=18.3
Q ss_pred CcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCccccccc
Q 021673 261 PECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 307 (309)
Q Consensus 261 ~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i 307 (309)
..|.-|-..+.+. .+..=+..||.+| .+|-.|+.+|
T Consensus 16 ~~C~~C~~~I~~~---~v~a~~~~~H~~C--------F~C~~C~~~L 51 (80)
T 2cuq_A 16 PRCARCSKTLTQG---GVTYRDQPWHREC--------LVCTGCQTPL 51 (80)
T ss_dssp CCCTTTCCCCCSC---CEESSSSEECTTT--------CBCSSSCCBC
T ss_pred CcCCCCCCEecCc---EEEECCchhhhhh--------CCcccCCCcC
Confidence 4566666655432 1223456666655 3455555544
No 167
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=27.55 E-value=30 Score=28.22 Aligned_cols=33 Identities=24% Similarity=0.560 Sum_probs=24.6
Q ss_pred CCCCcccccccccc--cCCceEEeCCCCcccHHHH
Q 021673 258 NEDPECCICLAKYK--EKEEVRKLPCSHMFHLKCV 290 (309)
Q Consensus 258 ~~~~~C~ICL~~~~--~~~~v~~LpC~H~FH~~CI 290 (309)
.++..|.+|...|. .+....-..|+|.+|..|=
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 46899999999763 3433444449999999996
No 168
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=27.27 E-value=42 Score=24.00 Aligned_cols=36 Identities=19% Similarity=0.501 Sum_probs=24.7
Q ss_pred CCCCcccccccccccCCceEEe-CCCCcccHHHHHHH
Q 021673 258 NEDPECCICLAKYKEKEEVRKL-PCSHMFHLKCVDQW 293 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~L-pC~H~FH~~CI~~W 293 (309)
.+...|.+|...|.--..-.-- .||++|+.+|....
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 3456899999998754211111 28999999997654
No 169
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=27.21 E-value=17 Score=27.46 Aligned_cols=41 Identities=22% Similarity=0.562 Sum_probs=25.9
Q ss_pred CCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCcccccccC
Q 021673 260 DPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 260 ~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
+..|+.|-.+++.... +.++..|=. =++....||-|.++++
T Consensus 32 ~~~CP~Cq~eL~~~g~-------~~hC~~C~~-~f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQDNG-------HARCRSCGE-FIEMKALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEEETT-------EEEETTTCC-EEEEEEECTTTCSBCE
T ss_pred cccCccCCCcceecCC-------EEECccccc-hhhccccCcchhhHHH
Confidence 3799999888764322 222333421 1455678999999886
No 170
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=27.18 E-value=48 Score=23.83 Aligned_cols=36 Identities=14% Similarity=0.375 Sum_probs=25.2
Q ss_pred CCCCcccccccccccCCceEEe-CCCCcccHHHHHHH
Q 021673 258 NEDPECCICLAKYKEKEEVRKL-PCSHMFHLKCVDQW 293 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~L-pC~H~FH~~CI~~W 293 (309)
.+...|.+|-..|.--..-.-- .|+++|+.+|....
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 3566899999998754211111 28999999997764
No 171
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=27.12 E-value=11 Score=29.71 Aligned_cols=46 Identities=26% Similarity=0.561 Sum_probs=28.0
Q ss_pred CCCcccccccccccCCceEE-eCCCCcccHHHHHHHHhcCCCCcccc
Q 021673 259 EDPECCICLAKYKEKEEVRK-LPCSHMFHLKCVDQWLRILSCCPLCK 304 (309)
Q Consensus 259 ~~~~C~ICL~~~~~~~~v~~-LpC~H~FH~~CI~~WL~~~~tCPlCR 304 (309)
+...|..|-..|..-..-.. -.||.+|+..|..........|-.|-
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~ 64 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQ 64 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHH
Confidence 44689999999865321111 23899999999777655566676663
No 172
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.70 E-value=30 Score=24.21 Aligned_cols=37 Identities=19% Similarity=0.521 Sum_probs=19.8
Q ss_pred CCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCccccccc
Q 021673 260 DPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 307 (309)
Q Consensus 260 ~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i 307 (309)
...|+-|-..+.+ ..+ ..-+..||.+| .+|..|+.+|
T Consensus 15 ~~~C~~C~~~I~~-~~~--~a~~~~~H~~C--------F~C~~C~~~L 51 (81)
T 2dlo_A 15 LEKCATCSQPILD-RIL--RAMGKAYHPGC--------FTCVVCHRGL 51 (81)
T ss_dssp CCBCTTTCCBCCS-CCE--EETTEEECTTT--------CBCSSSCCBC
T ss_pred CCccccCCCeecc-eeE--EECCccccHHh--------cCcccCCCcc
Confidence 4466666666652 222 22456666665 4455665554
No 173
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.63 E-value=32 Score=24.05 Aligned_cols=36 Identities=22% Similarity=0.580 Sum_probs=21.4
Q ss_pred CcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCccccccc
Q 021673 261 PECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 307 (309)
Q Consensus 261 ~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i 307 (309)
..|+-|-..+. ++.+. .-+..||.+| .+|-.|+.+|
T Consensus 16 ~~C~~C~~~I~-~~~v~--a~~~~wH~~C--------F~C~~C~~~L 51 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVS--ALGKTYHPDC--------FVCAVCRLPF 51 (81)
T ss_dssp CBCTTTCCBCC-SCCEE--ETTEEECTTT--------SSCSSSCCCC
T ss_pred CcCccccCEec-cceEE--ECCceeCccC--------CccccCCCCC
Confidence 46777777766 33222 3467777776 4455565554
No 174
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=26.16 E-value=37 Score=24.83 Aligned_cols=36 Identities=22% Similarity=0.528 Sum_probs=25.2
Q ss_pred CCCcccccccccccCCceEE-eCCCCcccHHHHHHHH
Q 021673 259 EDPECCICLAKYKEKEEVRK-LPCSHMFHLKCVDQWL 294 (309)
Q Consensus 259 ~~~~C~ICL~~~~~~~~v~~-LpC~H~FH~~CI~~WL 294 (309)
+...|.+|...|..-..-.. -.||++|+..|.....
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 45679999999875422122 2389999999987654
No 175
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=25.82 E-value=44 Score=22.92 Aligned_cols=40 Identities=20% Similarity=0.364 Sum_probs=26.5
Q ss_pred CCccccccccccc---CCceEEeCCCCcccHHHHHHHHhcCCCCcccccccC
Q 021673 260 DPECCICLAKYKE---KEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 260 ~~~C~ICL~~~~~---~~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
...|+-|-..+.+ +++. +..=+..||.+| .+|-.|+.++.
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~-~~a~~~~~H~~C--------F~C~~C~~~L~ 57 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSV-VAYEGQSWHDYC--------FHCKKCSVNLA 57 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCE-EEETTEEEETTT--------CBCSSSCCBCT
T ss_pred CccCcccCCcccCCCCCcee-EEECcceeCccc--------CEehhcCCCCC
Confidence 4578899888875 2222 223478889887 56777777653
No 176
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=25.47 E-value=32 Score=29.39 Aligned_cols=35 Identities=14% Similarity=0.436 Sum_probs=24.4
Q ss_pred CCCcccccccccccCCceEEe-CCCCcccHHHHHHH
Q 021673 259 EDPECCICLAKYKEKEEVRKL-PCSHMFHLKCVDQW 293 (309)
Q Consensus 259 ~~~~C~ICL~~~~~~~~v~~L-pC~H~FH~~CI~~W 293 (309)
++..|.+|...|.--..-..- .||++||..|-...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 457999999998743211111 28999999997654
No 177
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=25.29 E-value=58 Score=23.54 Aligned_cols=47 Identities=15% Similarity=0.294 Sum_probs=27.7
Q ss_pred CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCcccccccC
Q 021673 258 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
.+-..|..|-..+..+. .. ..=+..|+..|-.+ .....|..|..+|.
T Consensus 31 ~~CF~C~~C~~~L~~~~-~~-~~~g~~yC~~cy~~--~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 31 DTCFRCAKCLHPLANET-FV-AKDNKILCNKCTTR--EDSPKCKGCFKAIV 77 (101)
T ss_dssp TTTCCCSSSCCCTTSSC-CE-EETTEEECHHHHTT--CCCCBCSSSCCBCC
T ss_pred hcCCcccccCCCCCcCe-eE-CcCCEEEChhHhhh--hcCCccccCCCccc
Confidence 45577888877774332 11 12355666666432 23467888888774
No 178
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.49 E-value=36 Score=23.55 Aligned_cols=36 Identities=22% Similarity=0.502 Sum_probs=19.6
Q ss_pred CcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCccccccc
Q 021673 261 PECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 307 (309)
Q Consensus 261 ~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i 307 (309)
..|+-|-..+.+ +.+ ..-+..||.+| .+|-.|+.++
T Consensus 16 ~~C~~C~~~I~~-~~v--~a~~~~~H~~C--------F~C~~C~~~L 51 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NYL--SAMDTVWHPEC--------FVCGDCFTSF 51 (80)
T ss_dssp CBCTTTCCBCCS-SCE--EETTEEECTTT--------CBCSSSCCBS
T ss_pred CccccCCCeecc-eeE--EECCCeEecCc--------CChhhCCCCC
Confidence 456667666654 222 22356666666 4455555554
No 179
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=23.83 E-value=20 Score=34.80 Aligned_cols=48 Identities=27% Similarity=0.526 Sum_probs=30.7
Q ss_pred CCCCcccccccccccCCceEEe-CCCCcccHHHHHHHHh-----cCCCCccccc
Q 021673 258 NEDPECCICLAKYKEKEEVRKL-PCSHMFHLKCVDQWLR-----ILSCCPLCKQ 305 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~L-pC~H~FH~~CI~~WL~-----~~~tCPlCR~ 305 (309)
..+..-|||...+.++.....- -|.--||..|+.-=-. .+-.||.|+.
T Consensus 34 ~~~~~yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 34 PPPPVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAV 87 (488)
T ss_dssp CCCCEETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHH
T ss_pred CCCCeEEeCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcC
Confidence 4455666999887544333332 2889999999953221 1346999974
No 180
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=23.78 E-value=6.8 Score=26.51 Aligned_cols=17 Identities=29% Similarity=0.630 Sum_probs=11.4
Q ss_pred HHHHhcCCCCccccccc
Q 021673 291 DQWLRILSCCPLCKQEL 307 (309)
Q Consensus 291 ~~WL~~~~tCPlCR~~i 307 (309)
++||..--.||.||.++
T Consensus 4 d~~lL~iL~CP~c~~~L 20 (56)
T 2kpi_A 4 EAGLLEILACPACHAPL 20 (56)
T ss_dssp CCSCTTSCCCSSSCSCE
T ss_pred CHHHHhheeCCCCCCcc
Confidence 34455556799998875
No 181
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=23.64 E-value=46 Score=25.98 Aligned_cols=35 Identities=17% Similarity=0.435 Sum_probs=24.3
Q ss_pred CCCcccccccccccCCceEEe-CCCCcccHHHHHHH
Q 021673 259 EDPECCICLAKYKEKEEVRKL-PCSHMFHLKCVDQW 293 (309)
Q Consensus 259 ~~~~C~ICL~~~~~~~~v~~L-pC~H~FH~~CI~~W 293 (309)
+...|.+|-..|.--..-..- .||++||..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 456899999998754211111 28999999997654
No 182
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=23.39 E-value=51 Score=24.98 Aligned_cols=48 Identities=10% Similarity=0.157 Sum_probs=32.5
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCcccccccC
Q 021673 257 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 308 (309)
Q Consensus 257 ~~~~~~C~ICL~~~~~~~~v~~LpC~H~FH~~CI~~WL~~~~tCPlCR~~i~ 308 (309)
..+-..|..|-..+... . ....=+..|+..|-.+ .....|+.|..+|.
T Consensus 27 H~~CF~C~~C~~~L~~~-~-f~~~~g~~yC~~cy~~--~~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 27 HLKHFCCFDCDSILAGE-I-YVMVNDKPVCKPCYVK--NHAVVCQGCHNAID 74 (126)
T ss_dssp CGGGSBCTTTCCBCTTS-E-EEEETTEEEEHHHHHH--HSCCBCTTTCSBCC
T ss_pred cCCCCCcCCCCCCCCcC-E-EEeECCEEechHHhCc--CcCccCcccCCcCC
Confidence 34567899998877643 2 2223467788888655 34578999999875
No 183
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=23.37 E-value=38 Score=29.16 Aligned_cols=35 Identities=20% Similarity=0.574 Sum_probs=24.8
Q ss_pred CCCcccccccccccCCceEEe-CCCCcccHHHHHHH
Q 021673 259 EDPECCICLAKYKEKEEVRKL-PCSHMFHLKCVDQW 293 (309)
Q Consensus 259 ~~~~C~ICL~~~~~~~~v~~L-pC~H~FH~~CI~~W 293 (309)
++..|.+|...|.--..-..- .||++||..|-...
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 456999999998754211111 28999999997765
No 184
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=23.32 E-value=44 Score=27.62 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=13.7
Q ss_pred CcccccccccccCCceEEeCCCCcccHHH
Q 021673 261 PECCICLAKYKEKEEVRKLPCSHMFHLKC 289 (309)
Q Consensus 261 ~~C~ICL~~~~~~~~v~~LpC~H~FH~~C 289 (309)
..|.-|-..+.+++.+.. =+..||.+|
T Consensus 116 ~~C~~C~~~I~~~~~v~a--~~~~~H~~C 142 (192)
T 1b8t_A 116 DGCPRCGQAVYAAEKVIG--AGKSWHKSC 142 (192)
T ss_dssp EECTTTSCEECSSSCEEE--TTEEECTTT
T ss_pred CcCCCCCCEecCcEEEec--CCCccchhc
Confidence 346666665555443332 345555555
No 185
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.17 E-value=57 Score=23.36 Aligned_cols=36 Identities=22% Similarity=0.420 Sum_probs=24.1
Q ss_pred CCCCcccccccccccCCceEE-eCCCCcccHHHHHHH
Q 021673 258 NEDPECCICLAKYKEKEEVRK-LPCSHMFHLKCVDQW 293 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~-LpC~H~FH~~CI~~W 293 (309)
.+...|.+|...|..-..-.- -.|+++|+..|...-
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 345689999999864321111 128999999997653
No 186
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=22.15 E-value=55 Score=30.80 Aligned_cols=34 Identities=21% Similarity=0.513 Sum_probs=24.5
Q ss_pred CCCCcccccccccccCCceEEe--CCCCcccHHHHHHHH
Q 021673 258 NEDPECCICLAKYKEKEEVRKL--PCSHMFHLKCVDQWL 294 (309)
Q Consensus 258 ~~~~~C~ICL~~~~~~~~v~~L--pC~H~FH~~CI~~WL 294 (309)
..+..|.+|-+. ++-+.-= .|...||.+||+..+
T Consensus 91 G~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~ 126 (386)
T 2pv0_B 91 GYQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLV 126 (386)
T ss_dssp SSBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHT
T ss_pred CCcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhc
Confidence 467789999753 3222222 488999999999998
Done!