Query 021674
Match_columns 309
No_of_seqs 115 out of 1575
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 07:37:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021674.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021674hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 3.5E-28 1.2E-32 224.5 20.7 292 1-301 129-433 (451)
2 3o7q_A L-fucose-proton symport 99.9 3.6E-26 1.2E-30 210.3 19.9 280 1-305 127-435 (438)
3 2gfp_A EMRD, multidrug resista 99.9 2.4E-25 8.2E-30 201.1 3.4 263 1-288 98-363 (375)
4 4aps_A DI-OR tripeptide H+ sym 99.9 6.2E-22 2.1E-26 185.0 18.2 295 1-301 118-471 (491)
5 2cfq_A Lactose permease; trans 99.9 4.2E-22 1.4E-26 183.0 14.9 286 3-307 112-405 (417)
6 4gc0_A D-xylose-proton symport 99.8 1.1E-19 3.9E-24 169.5 15.3 300 1-308 136-471 (491)
7 2xut_A Proton/peptide symporte 99.7 3.3E-17 1.1E-21 154.2 13.4 73 1-73 119-194 (524)
8 4aps_A DI-OR tripeptide H+ sym 99.5 2E-12 6.9E-17 120.3 19.5 174 118-301 13-196 (491)
9 2xut_A Proton/peptide symporte 99.4 4.6E-12 1.6E-16 118.9 15.8 172 118-299 12-196 (524)
10 1pw4_A Glycerol-3-phosphate tr 99.3 4.9E-11 1.7E-15 109.4 15.1 170 120-301 30-206 (451)
11 3o7q_A L-fucose-proton symport 99.3 2.4E-10 8.4E-15 104.4 19.4 168 123-301 31-229 (438)
12 2cfq_A Lactose permease; trans 99.2 2.1E-12 7.2E-17 118.2 -0.8 172 114-294 3-180 (417)
13 2gfp_A EMRD, multidrug resista 99.1 1.3E-10 4.4E-15 104.2 9.3 163 123-296 5-169 (375)
14 4gc0_A D-xylose-proton symport 98.1 6.1E-05 2.1E-09 69.5 15.5 113 154-276 55-187 (491)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.96 E-value=3.5e-28 Score=224.47 Aligned_cols=292 Identities=16% Similarity=0.196 Sum_probs=202.3
Q ss_pred CCcccccchhhHHHHHhccCCCcchhHHHHHHHhhhhhHHHHhhhhHHHHhhhcC-CcchhHhhhhHHHHHHHHHHhhcc
Q 021674 1 MGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVFYSFGSLGTVWFTVWLSKAH 79 (309)
Q Consensus 1 ~Gig~g~~~p~~~~~i~~~~p~~~rg~~~g~~~~~~~~g~~lg~~l~~~l~~~~g-Wr~~F~i~~~~~~v~~~~~~~~~~ 79 (309)
+|++.|...|...++++|++|+|||++++++.+.+.++|.++++.+++++.+++| ||+.|++.+++.++..++.+...+
T Consensus 129 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~ 208 (451)
T 1pw4_A 129 CGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMR 208 (451)
T ss_dssp HHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4788899999999999999999999999999999999999999999999999999 999999988877665444444556
Q ss_pred cCCCCCCCCCHHHH----HHHHhccCC-CCCCCCCChhHhhcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCcc
Q 021674 80 SSPAEDPQLRPAEK----KLIVSSCAS-KEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLT 154 (309)
Q Consensus 80 ~~p~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~ 154 (309)
|+|++..+.++++. +...+++.+ +...++..+++++|+|.+|...+..++.....+++.+|+|.|+++.+|++..
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 288 (451)
T 1pw4_A 209 DTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALD 288 (451)
T ss_dssp CSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHH
T ss_pred CCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 65543211111100 000000000 0010111146778999999988888888888899999999999988999999
Q ss_pred chhhHhhhhHHHHHHHHHHHHHHHHHH--HHcCCChhhHHHHHHHHhhHHHHHHHHHhhcc--CchHHHH-HHHHHHHhh
Q 021674 155 ESGLFCVLPWLTMAFSANLGGWIADTL--VSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHV--DSPAMAV-LCMACSQGT 229 (309)
Q Consensus 155 ~~g~~~~~~~~~~~ig~~~~G~l~dr~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~ 229 (309)
+.+.+..+..++..++.++.|+++||+ ++|+ .+.....+............ ++..... .....+.+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 360 (451)
T 1pw4_A 289 KSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG--------ATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLI 360 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH--------HHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch--------hHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998 6542 12111111111222222222 1332222 222222222
Q ss_pred hhhhhcchhhhhhc-cCCCchHHHHHHHhHhHhh-hhhHHHhHHHhhcccCCchHHHHHHHHHHHHHHHHHHhh
Q 021674 230 DAFSQSGLYSNHQD-IAPRYSGVLLGLSNTAGVL-AGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF 301 (309)
Q Consensus 230 ~~~~~~~~~~~~~~-~~~~~~g~a~~~~~~~~~l-gg~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (309)
... .........+ .+++.++.+.++.+...++ |+.++|.+.|.+.|+.++...|.+.+++.+++.+.....
T Consensus 361 ~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 361 YGP-VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp THH-HHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hch-HHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 211 1222222333 4556799999999999999 999999999999999889999988877777766554443
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.94 E-value=3.6e-26 Score=210.28 Aligned_cols=280 Identities=10% Similarity=0.075 Sum_probs=191.5
Q ss_pred CCcccccchhhHHHHHhccCCCcchhHHHHHHHhhhhhHHHHhhhhHHHHh-hhcC------------------------
Q 021674 1 MGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI-HRFG------------------------ 55 (309)
Q Consensus 1 ~Gig~g~~~p~~~~~i~~~~p~~~rg~~~g~~~~~~~~g~~lg~~l~~~l~-~~~g------------------------ 55 (309)
+|+|.|...|...++++|++|+|||++++++.+...++|.++++.+++++. +..+
T Consensus 127 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (438)
T 3o7q_A 127 IAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVL 206 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhh
Confidence 478899999999999999999999999999999999999999999999998 5555
Q ss_pred -CcchhHhhhhHHHHHHHHHHh-hcccCCCCCCCCCHHHHHHHHhccCCCCCCCCCChhHhhcchHHHHHHHHHHHHHHH
Q 021674 56 -WPSVFYSFGSLGTVWFTVWLS-KAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWG 133 (309)
Q Consensus 56 -Wr~~F~i~~~~~~v~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 133 (309)
||+.|++.+.+.++..++++. ..||++++++ ++ ++++..+.++++++|+|++|...+..++....
T Consensus 207 ~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (438)
T 3o7q_A 207 SVQTPYMIIVAIVLLVALLIMLTKFPALQSDNH---SD----------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGA 273 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCC---CC----------SSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCccccccc---cc----------ccccchhhhHHHHHhChHHHHHHHHHHHHHHH
Confidence 999998777666554333332 2232221110 00 01111123467889999999988888888888
Q ss_pred HHHHHHhHHHH-HHHHhCCCccchhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhhHHHHHHHHHhhc
Q 021674 134 TFILLTWMPTY-YNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSH 212 (309)
Q Consensus 134 ~~~~~~wlp~~-l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~G~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (309)
.+...+|+|.| +++.+|++..+++.+.....++..++.++.|+++||+++|+ .+. ...............
T Consensus 274 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~--------~~~-~~~~~~~~~~~~~~~ 344 (438)
T 3o7q_A 274 QTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK--------VLA-AYALIAMALCLISAF 344 (438)
T ss_dssp HHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH--------HHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH--------HHH-HHHHHHHHHHHHHHH
Confidence 88999999999 88888999999999999999999999999999999998763 111 111111122111222
Q ss_pred cCchHHHHHHHHHHHhhhhhhhcchhhhhhccCCCchHHHHHHHhHhHhhhhhHHHhHHHhhcccCC-chHHHHHHHHHH
Q 021674 213 VDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS-WDDVFKVSVGLY 291 (309)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~~~~~~~lgg~i~~~~~g~l~~~~~-~~~~~~~~~~~~ 291 (309)
.++....+.....+++.+. ..+..++...+..|++++.+.++.+ .+++++.++|.+.|.+.|..+ +...|.+.+++.
T Consensus 345 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~ 422 (438)
T 3o7q_A 345 AGGHVGLIALTLCSAFMSI-QYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCF 422 (438)
T ss_dssp CCHHHHHHHHHHHHHHHTT-HHHHHHHHHHSSCGGGHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHH-HHHHHHHHHHhhccccccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 2233222222222322221 1222333323344445888888766 678999999999999999855 888888766555
Q ss_pred HHHHHHHHhhcCCc
Q 021674 292 LVGTAVWNLFSTGE 305 (309)
Q Consensus 292 ~~~~~~~~~~~~~~ 305 (309)
++..+ +.++.+|+
T Consensus 423 ~~~~~-~~~~~~~~ 435 (438)
T 3o7q_A 423 AVIFI-FARFRSQT 435 (438)
T ss_dssp HHHHH-HHTTCCCC
T ss_pred HHHHH-HHHHHHhc
Confidence 54443 33444333
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.90 E-value=2.4e-25 Score=201.11 Aligned_cols=263 Identities=11% Similarity=0.061 Sum_probs=185.8
Q ss_pred CCcccccchhhHHHHHhccCCCcchhHHHHHHHhhhhhHHHHhhhhHHHHhhhcCCcchhHhhhhHHHHHHHHHHhhccc
Q 021674 1 MGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHS 80 (309)
Q Consensus 1 ~Gig~g~~~p~~~~~i~~~~p~~~rg~~~g~~~~~~~~g~~lg~~l~~~l~~~~gWr~~F~i~~~~~~v~~~~~~~~~~~ 80 (309)
+|++.+...|...+++.|++|+|||++++++.+.+.++|.++++++++++.+++|||+.|++.+++.++..+......||
T Consensus 98 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (375)
T 2gfp_A 98 QGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPE 177 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCC
T ss_pred HHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 47788889999999999999999999999999999999999999999999999999999998777776543322333344
Q ss_pred CCCCCCCCCHHHHHHHHhccCCCCCCCCCChhHhhcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCccchhhHh
Q 021674 81 SPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFC 160 (309)
Q Consensus 81 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~g~~~ 160 (309)
+++++++ +++ +..++++++|+|+++...+..++.....+...+|+|.|+++.+|+++.+.+.+.
T Consensus 178 ~~~~~~~--------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 241 (375)
T 2gfp_A 178 TRPVDAP--------------RTR--LLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILF 241 (375)
T ss_dssp CSTTTCC--------------CCC--TTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHH
T ss_pred cCCCCcc--------------ccc--HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3322110 011 123456789999999888888888888899999999999998999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHh-h-HHHHHHHHHhhccCchHHH-HHHHHHHHhhhhhhhcch
Q 021674 161 VLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIG-F-LGPAFFLTQLSHVDSPAMA-VLCMACSQGTDAFSQSGL 237 (309)
Q Consensus 161 ~~~~~~~~ig~~~~G~l~dr~~~r~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 237 (309)
....++..++.++.+++.||.+++ . ...... . .............++.+.. ......+++.+. ..+..
T Consensus 242 ~~~~~~~~~~~~~~~~l~~r~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~ 312 (375)
T 2gfp_A 242 ILPIPAAFFGAWFAGRPNKRFSTL--M------WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGM-LFPLA 312 (375)
T ss_dssp HTHHHHHHHHHHHHHTTTTHHHHH--H------HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHH-TSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--H------HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHH-hhHHH
Confidence 999999999999999999998752 0 010010 0 0000001100001122221 112222222221 12223
Q ss_pred hhhhhccCCCchHHHHHHHhHhHhhhhhHHHhHHHhhcccCCchHHHHHHH
Q 021674 238 YSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSV 288 (309)
Q Consensus 238 ~~~~~~~~~~~~g~a~~~~~~~~~lgg~i~~~~~g~l~~~~~~~~~~~~~~ 288 (309)
.....|..|++++.+.++.+..+++|+.++|.+.|.+.++.++...+.+.+
T Consensus 313 ~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 313 TSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 333344445789999999999999999999999999988777777766543
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.88 E-value=6.2e-22 Score=184.96 Aligned_cols=295 Identities=12% Similarity=0.046 Sum_probs=174.8
Q ss_pred CCcccccchhhHHHHHhccCCCcc--hhHHHHHHHhhhhhHHHHhhhhHHHHhhhcCCcchhHhhhhHHHHHHHHHHhhc
Q 021674 1 MGIGEGVAMPAMNNILSKWVPVAE--RSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKA 78 (309)
Q Consensus 1 ~Gig~g~~~p~~~~~i~~~~p~~~--rg~~~g~~~~~~~~g~~lg~~l~~~l~~~~gWr~~F~i~~~~~~v~~~~~~~~~ 78 (309)
+|+|.|...|...++++|++|+++ |+++.++++.+.++|..+++++++++.++.|||+.|++.++..++..+..+...
T Consensus 118 ~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 197 (491)
T 4aps_A 118 IIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGG 197 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 478899999999999999999998 788899899999999999999999999999999999987665544332222211
Q ss_pred cc-CCC--CCCC--CCHHHHHHHHhc-----------------cCCCC------------------------CCCCCChh
Q 021674 79 HS-SPA--EDPQ--LRPAEKKLIVSS-----------------CASKE------------------------PVKTIPWG 112 (309)
Q Consensus 79 ~~-~p~--~~~~--~~~~~~~~~~~~-----------------~~~~~------------------------~~~~~~~~ 112 (309)
++ .++ ++++ .++++++...+. ....+ ..+..+..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (491)
T 4aps_A 198 KKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTST 277 (491)
T ss_dssp HTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred cccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHH
Confidence 11 111 1111 112221110000 00000 00000001
Q ss_pred HhhcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCccchhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCChhhHH
Q 021674 113 LILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVR 192 (309)
Q Consensus 113 ~l~~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~G~l~dr~~~r~~~~~~~~ 192 (309)
+..+....+......++....+....+++|.|+++..+.+..+.+.+.....++..++.++.|+++||++||+.... +
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~--~ 355 (491)
T 4aps_A 278 EHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSP--T 355 (491)
T ss_dssp ----CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CH--H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCch--H
Confidence 11122223444444444444556667889999999889988889999999999999999999999999988754321 1
Q ss_pred HHHHHHhhHHHHHHHH--Hh-h-----c-cCchHHH-HHHHHHHHhhhhhhhcchhhhhhc-cCCCchHHHHHHHhHhHh
Q 021674 193 KIMQSIGFLGPAFFLT--QL-S-----H-VDSPAMA-VLCMACSQGTDAFSQSGLYSNHQD-IAPRYSGVLLGLSNTAGV 261 (309)
Q Consensus 193 ~~~~~~~~~~~~~~~~--~~-~-----~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~a~~~~~~~~~ 261 (309)
.. ..+......... .. . . ..+..+. ......+.+.+. ..+..+....+ .+++.++.+.++.+...+
T Consensus 356 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 432 (491)
T 4aps_A 356 KF--AVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEML-ISPVGLSVTTKLAPKAFNSQMMSMWFLSSS 432 (491)
T ss_dssp HH--HHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHT-TTTHHHHHHHHHTTTTCSSSSTHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHH-HhHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 11 111111111111 01 0 0 0122222 222222222221 11222333333 455679999999999999
Q ss_pred hhhhHHHhHHHhhcccCCchHHHHHHHHHHHHHHHHHHhh
Q 021674 262 LAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF 301 (309)
Q Consensus 262 lgg~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (309)
+|+.++|.+.+.+.|. ++...|.+.+++.+++.+....+
T Consensus 433 ~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 471 (491)
T 4aps_A 433 VGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFL 471 (491)
T ss_dssp HHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988776 45566766666665555444444
No 5
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.88 E-value=4.2e-22 Score=182.95 Aligned_cols=286 Identities=11% Similarity=0.037 Sum_probs=172.7
Q ss_pred cccccchhhHHHHHhccCCC--cchhHHHHHHHhhhhhHHHHhhhhHHHHhhhcCCcchhHhhhhHHHHHHHHHHhhccc
Q 021674 3 IGEGVAMPAMNNILSKWVPV--AERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHS 80 (309)
Q Consensus 3 ig~g~~~p~~~~~i~~~~p~--~~rg~~~g~~~~~~~~g~~lg~~l~~~l~~~~gWr~~F~i~~~~~~v~~~~~~~~~~~ 80 (309)
++.|..+++....+.++.++ ++|++..+......++|..+++.+++++.+ .+||+.|++.+++.++..+..+ ..++
T Consensus 112 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~-~~~~ 189 (417)
T 2cfq_A 112 IYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLF-FAKT 189 (417)
T ss_dssp SSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSC-SSCC
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHH-HcCc
Confidence 33444455555666666654 466888889988899999999999999987 5899999986666544333322 2222
Q ss_pred CCCCCCCCCHHHHHHHHhccCCCCCCCCCChhHhhcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCC---Cccchh
Q 021674 81 SPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHF---NLTESG 157 (309)
Q Consensus 81 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~---s~~~~g 157 (309)
+|+++++ ++|+ + +.++++.+..++++++|+|++|...+..++....++.+.+|+|.|+++.++. +..+.+
T Consensus 190 ~~~~~~~--~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 262 (417)
T 2cfq_A 190 DAPSSAT--VANA----V-GANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFG 262 (417)
T ss_dssp CCSCSSC--SSSS----S-SSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHH
T ss_pred ccccccc--cccc----c-ccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHH
Confidence 2211110 0000 0 0001110111345688999988766665555555666778999999775542 344557
Q ss_pred hHhhhhHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhhHHHHHHHHHhhccCchHHHHHHH-HHHHhhhhhhhcc
Q 021674 158 LFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCM-ACSQGTDAFSQSG 236 (309)
Q Consensus 158 ~~~~~~~~~~~ig~~~~G~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 236 (309)
....+..++..++.++.|+++||+++|+ .+. .+....++........++....+... ..+.+.... ...
T Consensus 263 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~--------~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~ 332 (417)
T 2cfq_A 263 YVTTMGELLNASIMFFAPLIINRIGGKN--------ALL-LAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFL-LVG 332 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHH--------HHH-HHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcHHH--------HHH-HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH-HHH
Confidence 7777777888899999999999998763 111 12222222222222233333222211 111111111 111
Q ss_pred hhhhhhc-cCCCchHHHHHH-HhHhHhhhhhHHHhHHHhhcccCCchHHHHHHHHHHHHHHHHHHhhcCCccc
Q 021674 237 LYSNHQD-IAPRYSGVLLGL-SNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKV 307 (309)
Q Consensus 237 ~~~~~~~-~~~~~~g~a~~~-~~~~~~lgg~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (309)
.+....| .+++.+|++.++ .|..+++|+.++|.+.|.+.|+.++...|.+.+++.+++.+....+.+++++
T Consensus 333 ~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 333 CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 2222333 355679999998 4888899999999999999998778888888888877777665555444444
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.82 E-value=1.1e-19 Score=169.49 Aligned_cols=300 Identities=16% Similarity=0.096 Sum_probs=174.3
Q ss_pred CCcccccchhhHHHHHhccCCCcchhHHHHHHHhhhhhHHHHhhhhHHHHhhh--------cCCcchhHhhhhHHHHHHH
Q 021674 1 MGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR--------FGWPSVFYSFGSLGTVWFT 72 (309)
Q Consensus 1 ~Gig~g~~~p~~~~~i~~~~p~~~rg~~~g~~~~~~~~g~~lg~~l~~~l~~~--------~gWr~~F~i~~~~~~v~~~ 72 (309)
||+|.|+..+.+..+++|+.|+++|++..++...+..+|.+++..++..+.+. .+||..+.+..+..++. .
T Consensus 136 ~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 214 (491)
T 4gc0_A 136 GGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF-L 214 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh-h
Confidence 58999999999999999999999999999999999999999999888776543 35777777655555543 3
Q ss_pred HHHhhcccCCCCCC-CCCHHHH-HHHHh---c----------cC-CCCCCCCCChhHhhcchHHHHHHHH-HHHHHHHHH
Q 021674 73 VWLSKAHSSPAEDP-QLRPAEK-KLIVS---S----------CA-SKEPVKTIPWGLILSKPPVWALIVS-HFCHNWGTF 135 (309)
Q Consensus 73 ~~~~~~~~~p~~~~-~~~~~~~-~~~~~---~----------~~-~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~ 135 (309)
+.....||+|+... +.+.+|. +..++ + +. .++..+.......++.++....... .+....+.+
T Consensus 215 ~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (491)
T 4gc0_A 215 MLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGIN 294 (491)
T ss_dssp HHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHH
T ss_pred hhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhh
Confidence 44445677775210 1111111 10000 0 00 0000001112223344444333333 333334456
Q ss_pred HHHHhHHHHHHHHhCCCccchhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhhHHHHHHHHH-hhccC
Q 021674 136 ILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQ-LSHVD 214 (309)
Q Consensus 136 ~~~~wlp~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~G~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 214 (309)
.+..|.|.+.+ ..+.+..+.........+...++.++++++.||+|||+.... .........+.+.. .....
T Consensus 295 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~------~~~~~~~~~~~l~~~~~~~~ 367 (491)
T 4gc0_A 295 VVLYYAPEVFK-TLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQII------GALGMAIGMFSLGTAFYTQA 367 (491)
T ss_dssp HHHHHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHH------HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhcchHHHH-hcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhcc------chHHHHHHHHHHHHHHhccc
Confidence 66666666665 467877777777778888999999999999999998742111 01111111111111 11222
Q ss_pred chHHHHHHHHHHHhhhhhhhcc-hhhhhhccCC-CchHHHHHHHhHhHhhhhhHHHhHHHhhccc------CCchHHHHH
Q 021674 215 SPAMAVLCMACSQGTDAFSQSG-LYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQH------GSWDDVFKV 286 (309)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~g~a~~~~~~~~~lgg~i~~~~~g~l~~~------~~~~~~~~~ 286 (309)
.....+...............+ .+....|..| +.|+++.++.+..+++++++++.+.+.+.+. .++...|++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i 447 (491)
T 4gc0_A 368 PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWI 447 (491)
T ss_dssp CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 2222222211111111111111 2233345544 6899999999999999999999988877653 234456666
Q ss_pred HHHHHHHHHHHHHh--hcCCcccc
Q 021674 287 SVGLYLVGTAVWNL--FSTGEKVV 308 (309)
Q Consensus 287 ~~~~~~~~~~~~~~--~~~~~~~~ 308 (309)
.+++.+++.+...+ ..||++++
T Consensus 448 ~~~~~~~~~i~~~~~~PETkg~tL 471 (491)
T 4gc0_A 448 YGCMGVLAALFMWKFVPETKGKTL 471 (491)
T ss_dssp HHHHHHHHHHHHHHHCCCCTTCCH
T ss_pred HHHHHHHHHHHHHheecCCCCCCH
Confidence 66666666544333 36777654
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.72 E-value=3.3e-17 Score=154.16 Aligned_cols=73 Identities=21% Similarity=0.269 Sum_probs=64.0
Q ss_pred CCcccccchhhHHHHHhccCCCcchhHHHHH---HHhhhhhHHHHhhhhHHHHhhhcCCcchhHhhhhHHHHHHHH
Q 021674 1 MGIGEGVAMPAMNNILSKWVPVAERSRSLAL---VYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTV 73 (309)
Q Consensus 1 ~Gig~g~~~p~~~~~i~~~~p~~~rg~~~g~---~~~~~~~g~~lg~~l~~~l~~~~gWr~~F~i~~~~~~v~~~~ 73 (309)
+|++.|...|...++++|++|+++|+++.+. .+...++|.++++.+++++.++.|||+.|++.+++.++..+.
T Consensus 119 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 194 (524)
T 2xut_A 119 IALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVF 194 (524)
T ss_dssp HHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 4788899999999999999999999887777 999999999999999999999999999999877776554333
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.48 E-value=2e-12 Score=120.32 Aligned_cols=174 Identities=10% Similarity=0.072 Sum_probs=120.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----hCCCccchhhHhhhhHHHHHHHHHHHHHHHHH-HHHcCCChhhH
Q 021674 118 PPVWALIVSHFCHNWGTFILLTWMPTYYNQV-----LHFNLTESGLFCVLPWLTMAFSANLGGWIADT-LVSKGLSVTTV 191 (309)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~-----~g~s~~~~g~~~~~~~~~~~ig~~~~G~l~dr-~~~r~~~~~~~ 191 (309)
+..|.+....++...++|+...++|.|+++. +|+|..+.+++.+...++..++.++.|+++|| +|||+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~------ 86 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARP------ 86 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchH------
Confidence 3566777777888888999999999999998 99999999999999999999999999999999 89763
Q ss_pred HHHHHHHhhHHHHHHHHHhhccCchHHHH-HHHHHHHhhhhhhhcchhhhhhc-cCCCc--hHHHHHHHhHhHhhhhhHH
Q 021674 192 RKIMQSIGFLGPAFFLTQLSHVDSPAMAV-LCMACSQGTDAFSQSGLYSNHQD-IAPRY--SGVLLGLSNTAGVLAGVFG 267 (309)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~g~a~~~~~~~~~lgg~i~ 267 (309)
.+. .+.....+........++..... .....+.+.+.. .+.......| .++++ ++.+.++.+...++|..++
T Consensus 87 --~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~ 162 (491)
T 4aps_A 87 --AVF-WGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFL-KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIA 162 (491)
T ss_dssp --HHH-HHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHH-HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc-cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHH
Confidence 111 22222222222222333333322 222233332221 1222222223 34455 8889998999999999999
Q ss_pred HhHHHhhcccCCchHHHHHHHHHHHHHHHHHHhh
Q 021674 268 TAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF 301 (309)
Q Consensus 268 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (309)
|.+.+.+.++.+|+..|.+.+++.+++.+.+.+.
T Consensus 163 ~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 163 PLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998889999988777766666554443
No 9
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.40 E-value=4.6e-12 Score=118.94 Aligned_cols=172 Identities=14% Similarity=0.073 Sum_probs=116.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhC------CCccchhhHhhhhHHHHHHHHHHHHHHHHHH-HHcCCChhh
Q 021674 118 PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLH------FNLTESGLFCVLPWLTMAFSANLGGWIADTL-VSKGLSVTT 190 (309)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g------~s~~~~g~~~~~~~~~~~ig~~~~G~l~dr~-~~r~~~~~~ 190 (309)
+.+|.+....++...++|+...++|.|+++++| +|..+.+.+.+...++..++.+++|+++||+ |||+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~----- 86 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN----- 86 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH-----
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-----
Confidence 455667777888888899999999999999999 9999999999999999999999999999999 8763
Q ss_pred HHHHHHHHhhHHHHHHHHHhhccC-chHHHHH-HHHHHHhhhhhhhcchhhhhhc-cCCCchHHHHHH---HhHhHhhhh
Q 021674 191 VRKIMQSIGFLGPAFFLTQLSHVD-SPAMAVL-CMACSQGTDAFSQSGLYSNHQD-IAPRYSGVLLGL---SNTAGVLAG 264 (309)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~a~~~---~~~~~~lgg 264 (309)
.+. .+.....+........+ +...... ....+.+.+.. .+...+...| .++++++.+.+. .+...++|+
T Consensus 87 ---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~ 161 (524)
T 2xut_A 87 ---TIL-WLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGI-KPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGS 161 (524)
T ss_dssp ---HHH-HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHH
T ss_pred ---HHH-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcccc-chhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHH
Confidence 111 11211111111122223 3333222 22223322211 1222222233 355667655555 888899999
Q ss_pred hHHHhHHHhhcccCCchHHHHHHHHHHHHHHHHHH
Q 021674 265 VFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWN 299 (309)
Q Consensus 265 ~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (309)
.++|.+.+.+.++.+|+..|.+.+++.+++.+.+.
T Consensus 162 ~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 162 FFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888899999887777766655543
No 10
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.29 E-value=4.9e-11 Score=109.36 Aligned_cols=170 Identities=12% Similarity=0.029 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCccchhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHh
Q 021674 120 VWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIG 199 (309)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~G~l~dr~~~r~~~~~~~~~~~~~~~ 199 (309)
++......++.....+.+...+|.+.++ + .|..+.+++.+...++..++.++.|+++||+|||+. +. .+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~--------l~-~~ 98 (451)
T 1pw4_A 30 FLGIFFGYAAYYLVRKNFALAMPYLVEQ-G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVF--------LP-AG 98 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHTTSS-T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH--------HH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHH--------HH-HH
Confidence 3444445555555555566777777655 5 999999999999999999999999999999998731 11 11
Q ss_pred hHHHHHHHHHhhc----cCchHHH-HHHHHHHHhhhhhhhcchhhhhhcc-CCCchHHHHHHHhHhHhhhhhHHHhHHHh
Q 021674 200 FLGPAFFLTQLSH----VDSPAMA-VLCMACSQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGY 273 (309)
Q Consensus 200 ~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~a~~~~~~~~~lgg~i~~~~~g~ 273 (309)
....++....... .++.... +.....+.+.+.. .+...+...|. ++++|+.+.++.+....+|..++|.+.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 177 (451)
T 1pw4_A 99 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMG-WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL 177 (451)
T ss_dssp HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHT-HHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhc-cchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111111 2233222 2222233322211 12222333343 45789999999999999999999999999
Q ss_pred hcccCC-chHHHHHHHHHHHHHHHHHHhh
Q 021674 274 ILQHGS-WDDVFKVSVGLYLVGTAVWNLF 301 (309)
Q Consensus 274 l~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 301 (309)
+.+..+ |+..|.+.+++.++..+...++
T Consensus 178 l~~~~g~w~~~f~~~~~~~~~~~~~~~~~ 206 (451)
T 1pw4_A 178 GMAWFNDWHAALYMPAFCAILVALFAFAM 206 (451)
T ss_dssp HHHHTCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHhh
Confidence 888877 9999988777776665544444
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.28 E-value=2.4e-10 Score=104.35 Aligned_cols=168 Identities=11% Similarity=0.088 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhCCCccchhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhhHH
Q 021674 123 LIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLG 202 (309)
Q Consensus 123 ~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~G~l~dr~~~r~~~~~~~~~~~~~~~~~~ 202 (309)
....+++...........+|. +++++|+|..+.+++.+...++..++.++.|+++||+|||+. +. .+...
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~--------l~-~~~~~ 100 (438)
T 3o7q_A 31 LCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAG--------II-TGLFL 100 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHH--------HH-HHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHH--------HH-HHHHH
Confidence 344444444445555566766 556789999999999999999999999999999999998731 11 11111
Q ss_pred HHHHHHHh---hccCchHHHHHH-HHHHHhhhhhhhcchhhhhhc-cCCCchHHHHHHHhHhHhhhhhHHHhHHHhhc-c
Q 021674 203 PAFFLTQL---SHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQD-IAPRYSGVLLGLSNTAGVLAGVFGTAATGYIL-Q 276 (309)
Q Consensus 203 ~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~a~~~~~~~~~lgg~i~~~~~g~l~-~ 276 (309)
.++..... ...++....+.. ...+.+.+.. .+...+...| .++++|+.+.++.+....+|..++|.+.+.+. +
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 179 (438)
T 3o7q_A 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCL-ETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILS 179 (438)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHT
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHh-hhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11111111 233344333222 2233332221 2222233333 45678999999999999999999999999998 5
Q ss_pred cCC-------------------------chHHHHHHHHHHHHHHHHHHhh
Q 021674 277 HGS-------------------------WDDVFKVSVGLYLVGTAVWNLF 301 (309)
Q Consensus 277 ~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~ 301 (309)
..+ |+..|.+.+++.++..+.+.+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 229 (438)
T 3o7q_A 180 NVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT 229 (438)
T ss_dssp SSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 543 8888877666655555444443
No 12
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.16 E-value=2.1e-12 Score=118.16 Aligned_cols=172 Identities=14% Similarity=0.186 Sum_probs=105.6
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCccchhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCChhhHHH
Q 021674 114 ILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRK 193 (309)
Q Consensus 114 l~~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~G~l~dr~~~r~~~~~~~~~ 193 (309)
++|||++|......++....+.....++|.|+++++|+|+.+.|++.+...++..++.++.|+++||+|||+.....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~--- 79 (417)
T 2cfq_A 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWI--- 79 (417)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHH---
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH---
Confidence 68999999888777777667777789999999988999999999999999999999999999999999987522110
Q ss_pred HHHHHhhHHHHHHHHHhh---ccCchHHHHHHHHHHHhhhhhhhcchhhhhhcc---CCCchHHHHHHHhHhHhhhhhHH
Q 021674 194 IMQSIGFLGPAFFLTQLS---HVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDI---APRYSGVLLGLSNTAGVLAGVFG 267 (309)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~a~~~~~~~~~lgg~i~ 267 (309)
................. ..... .. ....+...+ ...+.......+. .++.++.+.+..+..+.+|..++
T Consensus 80 -~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~ 154 (417)
T 2cfq_A 80 -ITGMLVMFAPFFIFIFGPLLQYNIL-VG--SIVGGIYLG-FCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALG 154 (417)
T ss_dssp -HHHTTSCHHHHHHHTHHHHHHTTCC-HH--HHGGGSSTT-HHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHH-HHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHH
Confidence 00000000011100000 00010 00 000000000 0000011111111 12345767788888889999999
Q ss_pred HhHHHhhcccCCchHHHHHHHHHHHHH
Q 021674 268 TAATGYILQHGSWDDVFKVSVGLYLVG 294 (309)
Q Consensus 268 ~~~~g~l~~~~~~~~~~~~~~~~~~~~ 294 (309)
|.+.+++.+. +|+..|++.+++.++.
T Consensus 155 ~~l~~~l~~~-~~~~~f~~~~~~~~~~ 180 (417)
T 2cfq_A 155 ASIVGIMFTI-NNQFVFWLGSGCALIL 180 (417)
T ss_dssp HHHHHHHHHH-CSHHHHTTTTTTTTTH
T ss_pred HHHHHHHHHh-chhHHHHHHHHHHHHH
Confidence 9999999875 5888887655544333
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.13 E-value=1.3e-10 Score=104.24 Aligned_cols=163 Identities=12% Similarity=0.015 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhCCCccchhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhhHH
Q 021674 123 LIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLG 202 (309)
Q Consensus 123 ~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~G~l~dr~~~r~~~~~~~~~~~~~~~~~~ 202 (309)
+....++...........+|.+. +++|.|..+.++..+...++..++.+..|+++||+|||+..... .....+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~--~~~~~~---- 77 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADMA-RDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVG--MSIFML---- 77 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-TTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHH--HHHHHH----
T ss_pred HHHHHHHHHHHHHHHhhhhHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH--HHHHHH----
Confidence 34445555555555666677654 56899999999999999999999999999999999987644321 011111
Q ss_pred HHHHHHHhhccCchHHHHH-HHHHHHhhhhhhhcchhhhhhc-cCCCchHHHHHHHhHhHhhhhhHHHhHHHhhcccCCc
Q 021674 203 PAFFLTQLSHVDSPAMAVL-CMACSQGTDAFSQSGLYSNHQD-IAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSW 280 (309)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~a~~~~~~~~~lgg~i~~~~~g~l~~~~~~ 280 (309)
..+... ..++...... ....+.+.+.. .+...+...| .++++++.+.+..+....+|..++|.+.+.+.++.+|
T Consensus 78 ~~~~~~---~~~~~~~l~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 153 (375)
T 2gfp_A 78 ATLVAV---TTSSLTVLIAASAMQGMGTGVG-GVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNW 153 (375)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHH---HhccHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccH
Confidence 111111 1112222222 22222222211 1112222223 3457889999999999999999999999999988789
Q ss_pred hHHHHHHHHHHHHHHH
Q 021674 281 DDVFKVSVGLYLVGTA 296 (309)
Q Consensus 281 ~~~~~~~~~~~~~~~~ 296 (309)
+..|.+.+++.++..+
T Consensus 154 ~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 154 RACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999887777766654
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.13 E-value=6.1e-05 Score=69.45 Aligned_cols=113 Identities=10% Similarity=0.071 Sum_probs=62.4
Q ss_pred cchhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhhHHHHHHHHHhh------------------ccCc
Q 021674 154 TESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS------------------HVDS 215 (309)
Q Consensus 154 ~~~g~~~~~~~~~~~ig~~~~G~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~ 215 (309)
.+.|++.+...++..+|+++.|+++||+|||+. +. ++.+...+...... ..++
T Consensus 55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~--------l~-~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~ 125 (491)
T 4gc0_A 55 SLLGFCVASALIGCIIGGALGGYCSNRFGRRDS--------LK-IAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGY 125 (491)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH--------HH-HHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH--------HH-HHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhh
Confidence 345777788889999999999999999998731 11 11111111111001 1122
Q ss_pred hHHHHHH-HHHHHhhhhhhhcchhhhhhcc-CCCchHHHHHHHhHhHhhhhhHHHhHHHhhcc
Q 021674 216 PAMAVLC-MACSQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYILQ 276 (309)
Q Consensus 216 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~a~~~~~~~~~lgg~i~~~~~g~l~~ 276 (309)
....++. +..+++.+.. .+.......|. +++.|+...+..+....+|..+++.+...+.+
T Consensus 126 ~~~l~~~R~l~G~g~G~~-~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~ 187 (491)
T 4gc0_A 126 VPEFVIYRIIGGIGVGLA-SMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIAR 187 (491)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcc
Confidence 2222222 2223333221 11112223344 55789999999888887777777766655544
Done!