Query 021675
Match_columns 309
No_of_seqs 221 out of 1588
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 04:48:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021675.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021675hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0138 Glutaryl-CoA dehydroge 100.0 1.4E-57 3E-62 388.0 20.4 287 23-309 23-311 (432)
2 KOG0139 Short-chain acyl-CoA d 100.0 3.3E-56 7.1E-61 386.2 14.7 257 52-309 34-295 (398)
3 KOG0141 Isovaleryl-CoA dehydro 100.0 6.5E-54 1.4E-58 366.6 16.7 257 53-309 39-304 (421)
4 KOG0140 Medium-chain acyl-CoA 100.0 4.6E-53 1E-57 361.1 16.4 257 52-309 25-289 (408)
5 PLN02526 acyl-coenzyme A oxida 100.0 9.8E-49 2.1E-53 367.9 31.8 281 29-309 3-283 (412)
6 PLN02636 acyl-coenzyme A oxida 100.0 1.1E-48 2.4E-53 383.7 26.6 300 2-309 9-355 (686)
7 cd01151 GCD Glutaryl-CoA dehyd 100.0 1.6E-47 3.5E-52 357.1 30.9 258 51-309 9-267 (386)
8 PLN02312 acyl-CoA oxidase 100.0 1E-46 2.2E-51 369.1 25.0 307 1-309 1-360 (680)
9 PLN02519 isovaleryl-CoA dehydr 100.0 4.8E-45 1E-49 342.3 30.2 258 52-309 23-287 (404)
10 cd01156 IVD Isovaleryl-CoA deh 100.0 7.5E-45 1.6E-49 338.1 29.3 255 55-309 2-261 (376)
11 cd01162 IBD Isobutyryl-CoA deh 100.0 8.9E-45 1.9E-49 337.5 29.1 254 55-309 1-258 (375)
12 PRK12341 putative acyl-CoA deh 100.0 1.2E-44 2.5E-49 337.4 29.3 255 51-309 1-263 (381)
13 PTZ00461 isovaleryl-CoA dehydr 100.0 1.8E-44 3.8E-49 339.0 28.8 255 53-309 35-292 (410)
14 cd01157 MCAD Medium chain acyl 100.0 2E-44 4.3E-49 335.5 28.4 254 55-309 1-262 (378)
15 PRK03354 crotonobetainyl-CoA d 100.0 3.1E-44 6.8E-49 334.3 29.3 256 51-309 1-262 (380)
16 cd01160 LCAD Long chain acyl-C 100.0 2.4E-44 5.3E-49 334.2 28.4 251 58-309 2-258 (372)
17 TIGR03207 cyc_hxne_CoA_dh cycl 100.0 4.4E-44 9.6E-49 332.5 28.3 253 55-309 1-259 (372)
18 cd01161 VLCAD Very long chain 100.0 3.6E-44 7.7E-49 337.0 27.9 259 48-309 20-289 (409)
19 TIGR03203 pimD_small pimeloyl- 100.0 9.7E-44 2.1E-48 330.4 27.9 252 53-309 2-261 (378)
20 cd01158 SCAD_SBCAD Short chain 100.0 8E-43 1.7E-47 324.1 27.7 252 58-309 2-258 (373)
21 PRK09463 fadE acyl-CoA dehydro 100.0 1.1E-42 2.3E-47 342.5 28.9 249 55-309 79-355 (777)
22 PRK13026 acyl-CoA dehydrogenas 100.0 7.9E-42 1.7E-46 335.3 28.3 252 55-309 78-354 (774)
23 TIGR03204 pimC_large pimeloyl- 100.0 1.8E-41 4E-46 317.0 28.3 251 53-309 2-263 (395)
24 cd01155 ACAD_FadE2 Acyl-CoA de 100.0 2.9E-41 6.2E-46 315.9 26.4 251 59-309 3-277 (394)
25 COG1960 CaiA Acyl-CoA dehydrog 100.0 1E-40 2.2E-45 312.1 25.6 256 54-309 4-273 (393)
26 cd01153 ACAD_fadE5 Putative ac 100.0 2.5E-40 5.5E-45 310.6 27.4 242 63-309 2-270 (407)
27 cd01163 DszC Dibenzothiophene 100.0 1.1E-39 2.3E-44 303.6 24.3 238 66-309 3-242 (377)
28 cd01152 ACAD_fadE6_17_26 Putat 100.0 8E-40 1.7E-44 304.8 22.0 249 57-308 1-260 (380)
29 KOG0137 Very-long-chain acyl-C 100.0 2E-40 4.4E-45 305.1 16.9 264 46-309 67-343 (634)
30 PLN02876 acyl-CoA dehydrogenas 100.0 5.6E-39 1.2E-43 324.3 27.5 257 53-309 400-701 (822)
31 PTZ00456 acyl-CoA dehydrogenas 100.0 2.7E-38 5.8E-43 307.7 26.9 249 57-309 58-339 (622)
32 KOG0135 Pristanoyl-CoA/acyl-Co 100.0 9.3E-39 2E-43 291.8 13.1 263 44-309 28-332 (661)
33 cd01150 AXO Peroxisomal acyl-C 100.0 2.2E-37 4.7E-42 302.2 19.8 196 114-309 80-310 (610)
34 cd01154 AidB Proteins involved 100.0 2.6E-35 5.7E-40 277.2 24.7 233 67-309 38-295 (418)
35 PTZ00457 acyl-CoA dehydrogenas 100.0 2E-34 4.3E-39 273.5 25.8 200 94-309 58-271 (520)
36 PTZ00460 acyl-CoA dehydrogenas 100.0 1.2E-34 2.6E-39 283.0 18.8 181 129-309 88-298 (646)
37 PLN02443 acyl-coenzyme A oxida 100.0 6.3E-34 1.4E-38 278.4 20.4 175 135-309 98-306 (664)
38 cd00567 ACAD Acyl-CoA dehydrog 100.0 1.5E-32 3.3E-37 250.6 24.4 209 58-309 2-215 (327)
39 cd01159 NcnH Naphthocyclinone 100.0 3E-33 6.6E-38 259.7 18.2 227 66-309 3-243 (370)
40 KOG1469 Predicted acyl-CoA deh 100.0 4.5E-32 9.8E-37 228.8 12.8 211 95-306 36-262 (392)
41 PRK11561 isovaleryl CoA dehydr 100.0 3.4E-30 7.3E-35 246.2 22.4 210 90-309 90-320 (538)
42 KOG0136 Acyl-CoA oxidase [Lipi 99.9 3.3E-25 7.2E-30 207.4 10.6 181 129-309 104-314 (670)
43 PF02771 Acyl-CoA_dh_N: Acyl-C 99.8 2.2E-19 4.8E-24 138.4 9.1 112 56-167 1-113 (113)
44 PF02770 Acyl-CoA_dh_M: Acyl-C 99.7 2.6E-16 5.6E-21 103.7 6.7 52 171-222 1-52 (52)
45 TIGR02309 HpaB-1 4-hydroxyphen 99.7 3.3E-15 7.1E-20 141.9 16.5 148 156-309 129-307 (477)
46 PF11794 HpaB_N: 4-hydroxyphen 98.6 2.4E-07 5.1E-12 81.2 10.0 117 155-271 124-263 (264)
47 TIGR02310 HpaB-2 4-hydroxyphen 98.4 1.8E-05 3.9E-10 75.8 16.5 117 155-271 137-279 (519)
48 COG2368 Aromatic ring hydroxyl 98.2 1.5E-05 3.2E-10 74.3 11.7 122 150-271 125-275 (493)
49 PF14749 Acyl-CoA_ox_N: Acyl-c 96.5 0.015 3.2E-07 45.3 7.9 36 134-169 90-125 (125)
50 PF02084 Bindin: Bindin; Inte 56.0 44 0.00095 28.6 6.3 65 84-167 98-164 (238)
51 PF01726 LexA_DNA_bind: LexA D 55.2 43 0.00094 22.6 5.1 50 54-103 3-58 (65)
52 PF12584 TRAPPC10: Trafficking 39.6 71 0.0015 25.4 5.0 44 192-245 66-114 (147)
53 PF13051 DUF3912: Protein of u 32.5 76 0.0017 20.8 3.2 36 197-232 2-37 (68)
54 PF05428 CRF-BP: Corticotropin 23.3 30 0.00066 30.9 0.3 12 195-206 114-125 (311)
55 TIGR03826 YvyF flagellar opero 20.5 3.8E+02 0.0082 21.2 5.9 46 58-103 27-74 (137)
No 1
>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-57 Score=388.03 Aligned_cols=287 Identities=39% Similarity=0.579 Sum_probs=274.2
Q ss_pred CccccccccCCCCCCCCCCCCCCCCcccCCcCCCHHHHHHHHHHHHHHHhhcCccHHHHHHhCCCCHHHHHHHHhCCccc
Q 021675 23 LPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAG 102 (309)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~ 102 (309)
.+.+.+...+++...++.+|+-..|++.+.+.|+++...+++.+|+++++++.|...++++...|+.++++++..+|+++
T Consensus 23 l~p~e~g~r~~s~~~~s~~P~f~qD~~~l~dqLT~dE~air~~~Reycq~~l~Prvtea~r~e~F~~~i~pemGsmGvlG 102 (432)
T KOG0138|consen 23 LAPTERGGRTQSQLSKSSRPEFWQDPLVLEDQLTEDEIAIRDTFREYCQERLMPRVTEANRNEVFDREIIPEMGSMGVLG 102 (432)
T ss_pred CchhhhccccccccccccCCccccchhhhhhhcCHHHHHHHHHHHHHHHHHhhhHHHHHhhhccCChhhhhhhhcccccc
Confidence 45555555666667778888889999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHccCCcchhHHHHhHHHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEeecCCCCCC
Q 021675 103 GTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSD 182 (309)
Q Consensus 103 ~~~~~~GG~g~~~~~~~~v~e~la~~d~s~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~ 182 (309)
..++.||+.|.|...+..+.+|+.|+|.+....+.+|+++++..|..+|+|+||+||||.+++|+.++||++|||+||||
T Consensus 103 ~tikGYGCaG~S~vaygl~~rEveRVDs~yrs~~sVqsSL~m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLTEPn~GSd 182 (432)
T KOG0138|consen 103 PTIKGYGCAGVSSVAYGLLAREVERVDSGYRSAMSVQSSLVMGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLTEPNHGSD 182 (432)
T ss_pred CcccCcCCCchHHHHHHHHHHHHHHhhhhchhhhhhhhhhhhhhHhhcCCHHHHhhhhhhhhcCceeeEEeccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEeCCE--EEEeeeeeeecCCCCCCEEEEEEEeCCCCCeEEEEEeCCCCCeeEecccCcccccccCceeEEE
Q 021675 183 ASALNTTATKVEGG--WILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILL 260 (309)
Q Consensus 183 ~~~~~t~a~~~~~~--~~lnG~K~~i~~a~~a~~~~V~a~~~~~~~~~~flV~~~~pGv~v~~~~~~~Gl~~~~~~~l~f 260 (309)
+.+++|+|+++..+ |.|||+|.||+|+++||+++||||.+.++.+..|+|+++.+|++.-++.+|+++|++.++.|-+
T Consensus 183 psgmeT~At~~e~~ktyklNGsKtWI~nsp~aDl~vvwAr~~t~n~I~GFi~~k~~~GL~apkI~gK~sLRas~tG~Ilm 262 (432)
T KOG0138|consen 183 PSGMETRATYDESNKTYKLNGSKTWITNSPMADLFVVWARCETDNKIRGFILEKGMRGLSAPKIEGKFSLRASATGMILM 262 (432)
T ss_pred cccccceeEEccCCceEEECCeeeeecCCcccceEEEEEecccCCceeeEEEecCCCCCcCCCcCCeeeeeecccCceee
Confidence 99999999998876 9999999999999999999999999877899999999999999999999999999999999999
Q ss_pred ceeeeCCCCCcCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 021675 261 KKVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRY 309 (309)
Q Consensus 261 ~~v~Vp~~~~l~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~Y 309 (309)
|||+||++++|+...++.....+|+..|.++||.++|+++.+++.|.+|
T Consensus 263 d~V~VPeE~~LPg~~s~qgpf~cLnnaR~giAWg~lGase~c~~~arqY 311 (432)
T KOG0138|consen 263 DGVEVPEENLLPGASSLQGPFGCLNNARYGIAWGALGASEFCLHTARQY 311 (432)
T ss_pred cCCcCChhhcCCCccccCCchhhhhhhhhheeehhchhHHHHHHHHHHH
Confidence 9999999999999889988899999999999999999999999999987
No 2
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=3.3e-56 Score=386.21 Aligned_cols=257 Identities=34% Similarity=0.543 Sum_probs=246.8
Q ss_pred CcCCCHHHHHHHHHHHHHHHhhcCccHHHHHHhCCCCHHHHHHHHhCCcccccc-ccCCCCCCCHHHHHHHHHHHHccCC
Q 021675 52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDA 130 (309)
Q Consensus 52 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~ 130 (309)
...+++.+..+++.+++|+++.+.|.+.+.|+++.+|..+++.+.++|++++.+ ++|||.|.++...+.++||+++.|+
T Consensus 34 l~~l~E~e~~l~~tvrkfa~~~i~Plv~~mD~~~~~~~~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk~d~ 113 (398)
T KOG0139|consen 34 LQILSETEQMLQKTVRKFAQEEIKPLVREMDRESRYPASVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISKVDA 113 (398)
T ss_pred hhhcCcHHHHHHHHHHHHHHHhcchHHHhhhhhccCCHHHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHHhccCc
Confidence 346789999999999999999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred cchhHHHHhHHHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEeecCCCCCCCCCCceEEEEeCCEEEEeeeeeeecCCC
Q 021675 131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST 210 (309)
Q Consensus 131 s~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~lnG~K~~i~~a~ 210 (309)
|++.++.+|+.+...+|..+||++||++|+|.+ .++.+++||++||+.|||+..+.|+|++++|.|+|||.|.||+|+.
T Consensus 114 sv~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~-~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWItN~~ 192 (398)
T KOG0139|consen 114 SVGVIVDVQNTLYLPLIIQFGTEEQKEKYLPKL-TGDLVGSFALSEPGAGSDAFALKTTAKKDGDDYVINGSKMWITNAG 192 (398)
T ss_pred cceeEEEecccccchHHHHhCcHHHHhhhcchh-hccccceeeecCCCCCcchHHhhhhHhhcCCeEEEecceeeecCCc
Confidence 999999999999999999999999999888875 6678999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCC---CCeEEEEEeCCCCCeeEecccCcccccccCceeEEEceeeeCCCCCcCCC-CCHHHHHHhhhH
Q 021675 211 FADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAV 286 (309)
Q Consensus 211 ~a~~~~V~a~~~~~---~~~~~flV~~~~pGv~v~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~~l~~ 286 (309)
.|++++|+|..+.. +++.+|+||++.||+++....+|+|+|++.++.++|+||+||.+++||+. .||++....|+.
T Consensus 193 ~A~~~lVfan~d~~~~~Kgit~fiV~rd~~Gl~~~k~eDKLGmRaSsTcql~fedVrVpks~IlGe~G~GykyAm~~Ln~ 272 (398)
T KOG0139|consen 193 EADWFLVFANADPSKGYKGITCFIVPRDTPGLSLGKKEDKLGMRASSTCQLHFEDVRVPKSSILGEYGKGYKYAIEVLNA 272 (398)
T ss_pred ccceEEEEEecChhhccCceeEEEeeCCCCCcccCCccccccccccceeeEEeccccccchhhcccCCcchHHHHHhcCc
Confidence 99999999998643 68999999999999999999999999999999999999999999999985 899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q 021675 287 SRVMVAWQPIGISMGVYDMCHRY 309 (309)
Q Consensus 287 ~r~~~aa~~~G~a~~al~~a~~Y 309 (309)
+|++++++++|++++|+|.++.|
T Consensus 273 gRIgi~AqmlglaQ~c~d~tI~Y 295 (398)
T KOG0139|consen 273 GRIGIGAQMLGLAQGCFDETIPY 295 (398)
T ss_pred cceeehhhhhhhhHhHHHhhhHH
Confidence 99999999999999999999988
No 3
>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=100.00 E-value=6.5e-54 Score=366.59 Aligned_cols=257 Identities=30% Similarity=0.454 Sum_probs=246.6
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcCccHHHHHHhCCC--CHHHHHHHHhCCcccccc-ccCCCCCCCHHHHHHHHHHHHccC
Q 021675 53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEF--PFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVD 129 (309)
Q Consensus 53 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d 129 (309)
+-+++++..+|+.+++|+++++.|.+.++|+.++| -+++|+++.+.|+++++. ++|||.|++....+.++||+++..
T Consensus 39 ~g~~~e~~~~r~sv~kF~qeelaP~a~eidk~n~~~~~r~~WkklG~~gllGita~~~~GG~G~~y~~h~ivmEE~sra~ 118 (421)
T KOG0141|consen 39 FGLSDEQDQLRESVRKFFQEELAPHASEIDKANEFKDLREFWKKLGKQGLLGITAPEEYGGSGGGYLSHCIVMEEISRAS 118 (421)
T ss_pred cCCCHHHHHHHHHHHHHHHHhhcchhhhhhhcCCcchHHHHHHHhhhcCcccccchhhhCCCchhHHHHHHHHHHHHhhc
Confidence 44899999999999999999999999999999999 467999999999999988 999999999999999999999999
Q ss_pred CcchhHHHHhHHHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEeecCCCCCCCCCCceEEEEeCCEEEEeeeeeeecCC
Q 021675 130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209 (309)
Q Consensus 130 ~s~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~lnG~K~~i~~a 209 (309)
.+++..++.|+.+++.-|.+.|+++||++|||++++|+-+++.|||||+.|||+.++.+.|+++++.|+|||.|.||||+
T Consensus 119 g~v~lsygaHSnlcinqlvrnGseeQkekylPkl~sGe~iGalAMsEp~AGSDvv~mK~~Aek~g~~yiLNGsK~witNG 198 (421)
T KOG0141|consen 119 GGVALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAMSEPGAGSDVVSMKLKAEKKGDDYILNGSKFWITNG 198 (421)
T ss_pred CCcccccccccchHHHHHHhcCCHHHHHhhhhhhhcccccceeeecCCCCCCccceeeeeceecCCcEEecCcEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCC-----CCCeEEEEEeCCCCCeeEecccCcccccccCceeEEEceeeeCCCCCcCCC-CCHHHHHHh
Q 021675 210 TFADVLVIFARNTT-----TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKV 283 (309)
Q Consensus 210 ~~a~~~~V~a~~~~-----~~~~~~flV~~~~pGv~v~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~~ 283 (309)
+.||+++|.|.++. .+|+.+|||++..||++..+..+|+|||+.+++++.|+|++||++++|+.. +|+-+++..
T Consensus 199 ~~advliVyAkTd~~a~~~~hGIt~FiVEkgm~GFs~~~KLdKlGmrgsdTcELvFed~~vpas~ilg~enkGvYvlMsg 278 (421)
T KOG0141|consen 199 PDADVLIVYAKTDHSAVPPSHGITAFIVEKGMPGFSTAQKLDKLGMRGSDTCELVFEDCKVPASNILGEENKGVYVLMSG 278 (421)
T ss_pred CCCcEEEEEEecCCCCCCCcCceEEEEEcCCCcccccchhhHhhcCCCCcchheehhhccCcHHHhcCcCCceEEEEecC
Confidence 99999999999853 379999999999999999999999999999999999999999999999986 688788899
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcC
Q 021675 284 LAVSRVMVAWQPIGISMGVYDMCHRY 309 (309)
Q Consensus 284 l~~~r~~~aa~~~G~a~~al~~a~~Y 309 (309)
|+..|+.+|+..+|+++.++|.+..|
T Consensus 279 Ld~ERLvla~gplglmqa~~d~~~~Y 304 (421)
T KOG0141|consen 279 LDLERLVLAAGPLGLMQAALDETFPY 304 (421)
T ss_pred CChhHhhhccCchHHHHHHHHHhhhH
Confidence 99999999999999999999999887
No 4
>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=4.6e-53 Score=361.10 Aligned_cols=257 Identities=30% Similarity=0.454 Sum_probs=247.8
Q ss_pred CcCCCHHHHHHHHHHHHHHHhhcCccHHHHHHhCCCCHHHHHHHHhCCcccccc-ccCCCCCCCHHHHHHHHHHHHccCC
Q 021675 52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDA 130 (309)
Q Consensus 52 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~ 130 (309)
++.|+++|.++++.+++|.++++-|.+.++|+.++||-+++++-.++||.+..+ +.|||+|++.++.+.+.|+|+..|.
T Consensus 25 sf~L~e~qke~q~~A~kFa~~e~~P~aae~Dk~ge~P~~iirkA~~lG~~~~~ip~~~GG~Gls~l~t~lI~E~LayGCt 104 (408)
T KOG0140|consen 25 SFGLTEDQKEFQEAARKFAKDEMIPNAAEYDKSGEFPWEIIRKAHELGFMNTYIPEDYGGLGLSRLDTCLIFEALAYGCT 104 (408)
T ss_pred ccCcchHHHHHHHHHHHHHHHhhccchhhhcccCCCcHHHHHHHHHcccCcccCccccCCCCchhHHHHHHHHHHHccch
Confidence 578999999999999999999999999999999999999999999999999988 9999999999999999999999999
Q ss_pred cchhHHHHhHHHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEeecCCCCCCCCCCceEEEEeCCEEEEeeeeeeecCCC
Q 021675 131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST 210 (309)
Q Consensus 131 s~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~lnG~K~~i~~a~ 210 (309)
++...+..|+ ++.++|..+|+++||++||++++....++++++|||+.|||+.++.|+|++.+|.|+|||+|.||+|+.
T Consensus 105 g~~~~I~~~~-l~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEPgAGSDvagikTka~KkGDeYiiNGsKawItg~G 183 (408)
T KOG0140|consen 105 GIQTAISIHN-LAAWPIILSGNEEQKKKYLGRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKKGDEYIINGSKAWITGAG 183 (408)
T ss_pred hHHHHHhccc-hhhhhehhcCcHHHHHhhhhhhhcchhhhhhhccCCCCCcchhhhhhhhhhcCCEEEEcCceeeeecCC
Confidence 9998888877 889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCC------CCeEEEEEeCCCCCeeEecccCcccccccCceeEEEceeeeCCCCCcCCC-CCHHHHHHh
Q 021675 211 FADVLVIFARNTTT------NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKV 283 (309)
Q Consensus 211 ~a~~~~V~a~~~~~------~~~~~flV~~~~pGv~v~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~~ 283 (309)
.|+|++|++|++++ ++..+|+|+.++||++.++.+.+||.|..++-.|+|+||+||.+|+|+.+ .||++.+..
T Consensus 184 ~anwyfVlaRtd~~pk~p~~Kaft~fiVe~dTpGlt~GkKE~nmGqr~sdTR~itFEDvrVP~~Nvlg~~G~GFkvAm~~ 263 (408)
T KOG0140|consen 184 HANWYFVLARTDPDPKTPAGKAFTAFIVEGDTPGLTRGKKEKNMGQRCSDTRGITFEDVRVPKENVLGAPGAGFKVAMGG 263 (408)
T ss_pred ccceEEEEEecCCCCCCCCCcceEEEEEeCCCCCcCcChhhhcccccCCCCceeeeeecccchhccccCCCccceehhhh
Confidence 99999999998653 57889999999999999999999999999999999999999999999986 899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcC
Q 021675 284 LAVSRVMVAWQPIGISMGVYDMCHRY 309 (309)
Q Consensus 284 l~~~r~~~aa~~~G~a~~al~~a~~Y 309 (309)
|+.+|..+|+.++|+++++++++++|
T Consensus 264 fd~tRp~vAa~alG~A~r~ld~a~ky 289 (408)
T KOG0140|consen 264 FDKTRPNVAAGALGLAQRCLDEATKY 289 (408)
T ss_pred ccCCCCchhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999987
No 5
>PLN02526 acyl-coenzyme A oxidase
Probab=100.00 E-value=9.8e-49 Score=367.90 Aligned_cols=281 Identities=88% Similarity=1.384 Sum_probs=260.1
Q ss_pred cccCCCCCCCCCCCCCCCCcccCCcCCCHHHHHHHHHHHHHHHhhcCccHHHHHHhCCCCHHHHHHHHhCCccccccccC
Q 021675 29 SVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGY 108 (309)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~~~~ 108 (309)
++.+|+.++++-+||...+.+.|+..+++++.++++.+++|+++++.|...++++...+|.++|++|.++||+++.+++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~v~~~ 82 (412)
T PLN02526 3 SVAFPQATPASIFPPSVSDYYQFDDLLTPEEQALRKRVRECMEKEVAPIMTEYWEKAEFPFHIIPKLGSLGIAGGTIKGY 82 (412)
T ss_pred ccccccCCCCCCCChhhccccccccCCCHHHHHHHHHHHHHHHHhcccchHHHHHhCCCCHHHHHHHHHCCCCcCccccc
Confidence 35678888989999998888889988999999999999999999999888777777889999999999999999877999
Q ss_pred CCCCCCHHHHHHHHHHHHccCCcchhHHHHhHHHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEeecCCCCCCCCCCce
Q 021675 109 GCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNT 188 (309)
Q Consensus 109 GG~g~~~~~~~~v~e~la~~d~s~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t 188 (309)
||.|+++.+.+.+++++++.|++++..+.+|..++...|..+|+++||++||+++.+|+.++++++|||++|||+.++.|
T Consensus 83 GG~G~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t 162 (412)
T PLN02526 83 GCPGLSITASAIATAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNT 162 (412)
T ss_pred CCCCcCHHHHHHHHHHHHhhCchHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCee
Confidence 99999999999999999999998877777777677778999999999999999999999999999999999999999999
Q ss_pred EEEEeCCEEEEeeeeeeecCCCCCCEEEEEEEeCCCCCeEEEEEeCCCCCeeEecccCcccccccCceeEEEceeeeCCC
Q 021675 189 TATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDE 268 (309)
Q Consensus 189 ~a~~~~~~~~lnG~K~~i~~a~~a~~~~V~a~~~~~~~~~~flV~~~~pGv~v~~~~~~~Gl~~~~~~~l~f~~v~Vp~~ 268 (309)
++++++|||+|||+|+||+|+..||+++|++++++++++.+|+||.+.|||++.+.|+++|++++++++|+|+||+||++
T Consensus 163 ~a~~~~gg~~lnG~K~~vs~~~~Ad~~lv~a~~~~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~t~s~~v~f~~v~Vp~~ 242 (412)
T PLN02526 163 TATKVEGGWILNGQKRWIGNSTFADVLVIFARNTTTNQINGFIVKKGAPGLKATKIENKIGLRMVQNGDIVLKDVFVPDE 242 (412)
T ss_pred EEEEECCEEEEEEEEeeecCCCccCEEEEEEEeCCCCCeEEEEEcCCCCCeEcCCCCCccCcCCCCeeEEEEeeEEECHH
Confidence 99999999999999999999999999999999865567889999999999999999999999999999999999999999
Q ss_pred CCcCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 021675 269 DRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRY 309 (309)
Q Consensus 269 ~~l~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~Y 309 (309)
++|+...++......+...|+.+++.++|+++++++.+++|
T Consensus 243 ~~l~~~~~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~ 283 (412)
T PLN02526 243 DRLPGVNSFQDTNKVLAVSRVMVAWQPIGISMGVYDMCHRY 283 (412)
T ss_pred HhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99977667777778899999999999999999999999876
No 6
>PLN02636 acyl-coenzyme A oxidase
Probab=100.00 E-value=1.1e-48 Score=383.67 Aligned_cols=300 Identities=19% Similarity=0.249 Sum_probs=258.2
Q ss_pred CCCCCCCccchHHHhhccCCCCcccccc-ccCCCCCCCCCCCCCCCCcccCCcCCCHHHHHHHHHHHHHHHhhc---Ccc
Q 021675 2 TIHSSKHQDDVDKNARSSYFNLPALDIS-VAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEI---API 77 (309)
Q Consensus 2 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~---~~~ 77 (309)
..|++.....||+..|+.||........ ...+.+|. .....++|+..|...+++++.++++.+++|+.+++ .|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~f~~~~l~~~l~~~~~~~r~~v~~~~~~~~~~~~~~ 86 (686)
T PLN02636 9 RAEDDGEIAARRIQRLSLHLSPVPLPKEEQLSRLVCA--RSIKLSVNTEKLSLYMRGKHRDIQEKIYEFFNSRPDLQTPV 86 (686)
T ss_pred ccccchhHHHHHHHHHHHhcCcCCCCCcccCCccccc--ccccCCCCHHHHHhhcCCcHHHHHHHHHHHHHhCccccCCc
Confidence 3456667778999999999964432221 11222233 22345788889999999989999999999998874 455
Q ss_pred HHHHHHhCCCC-HHHHHHHHhCCcccccc-ccCCCCCCCHHHHHHHHHHHHccCCcchhHHHHhHHHHHHHHHhcCCHHH
Q 021675 78 MAEYWEKAEFP-FHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQ 155 (309)
Q Consensus 78 ~~~~~~~~~~~-~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~s~~~~~~~~~~~~~~~l~~~Gt~~q 155 (309)
...+++.++++ .++++.+.+.|++++.+ ++ ++.+...+.|++++.|++++..+++|+.++..+|..+||++|
T Consensus 87 ~~~~~~~~e~~~~~l~~~~~~~g~~~~~~~~~------~~~~~~~~~e~l~~~d~s~~~~~~vh~~l~~~~I~~~GTeeQ 160 (686)
T PLN02636 87 EISKDEHRELCMRQLTGLVREAGIRPMKYLVE------DPAKYFAITEAVGSVDMSLGIKLGVQYSLWGGSVINLGTKKH 160 (686)
T ss_pred hhhHHHhhhhHHHHHHHHHHhcCccccccccC------CHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHhCCHHH
Confidence 55666677888 88889999999998865 43 778899999999999999888889999889999999999999
Q ss_pred HHHHhHHHhcccceeEEEeecCCCCCCCCCCceEEEEe--CCEEEEe-----eeeeeecCCCC-CCEEEEEEEeC-----
Q 021675 156 KQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIGNSTF-ADVLVIFARNT----- 222 (309)
Q Consensus 156 k~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~--~~~~~ln-----G~K~~i~~a~~-a~~~~V~a~~~----- 222 (309)
|++|||++.+|+.++||++|||+||||+++++|+|+++ +|+|+|| |+|+||+|++. ||+++|+|++.
T Consensus 161 k~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtA~~d~~~defVLntP~~~g~K~wI~na~~~ad~~vV~Arl~~~~~~ 240 (686)
T PLN02636 161 RDKYFDGIDNLDYPGCFAMTELHHGSNVQGLQTTATFDPLTDEFVINTPNDGAIKWWIGNAAVHGKFATVFARLKLPTHD 240 (686)
T ss_pred HHHHHHHHhCCChhhhhhccCCCcccCcccCeeEEEEcCCCCeEEECCCCCCeEEEeecCCcccCCEEEEEEEecCCCCC
Confidence 99999999999999999999999999999999999998 7899999 99999999976 99999999974
Q ss_pred ----CCCCeEEEEEeCC-------CCCeeEecccCcccccccCceeEEEceeeeCCCCCcCC-----------------C
Q 021675 223 ----TTNQINGYLVKKD-------APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-----------------V 274 (309)
Q Consensus 223 ----~~~~~~~flV~~~-------~pGv~v~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~-----------------~ 274 (309)
.+.|+++||||++ .|||++.++++|+|+++++|+.|.||||+||++++|+. +
T Consensus 241 ~~~~~~~Gi~~FlVp~r~~~~~~~~PGV~v~~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~g~v~~~G~y~~~~~~~~ 320 (686)
T PLN02636 241 SKGVSDMGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVGLNGVDNGALRFRSVRIPRDNLLNRFGDVSRDGKYTSSLPTIN 320 (686)
T ss_pred ccCCCCCCeeEEEEecCccccCCCCCCeEeccCCCccCCCCCcceEEEEeeEEECHHHhccccccccCCCcccccCCCcc
Confidence 1358999999998 59999999999999999999999999999999999942 2
Q ss_pred CCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 021675 275 NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRY 309 (309)
Q Consensus 275 ~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~Y 309 (309)
++|......+..+|+.+++.++|++++|+++|++|
T Consensus 321 ~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrY 355 (686)
T PLN02636 321 KRFAATLGELVGGRVGLAYGSVGVLKASNTIAIRY 355 (686)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788889999999999999999999999999988
No 7
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=100.00 E-value=1.6e-47 Score=357.14 Aligned_cols=258 Identities=42% Similarity=0.726 Sum_probs=242.0
Q ss_pred CCcCCCHHHHHHHHHHHHHHHhhcCccHHHHHHhCCCCHHHHHHHHhCCcccccc-ccCCCCCCCHHHHHHHHHHHHccC
Q 021675 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVD 129 (309)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d 129 (309)
|++.+++++.++++.+++|+++++.|...+.++++.+|.++|++|.+.||+++ + ++|||.|+++.+...+++++++.|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~-vP~~~GG~g~~~~~~~~v~e~l~~~~ 87 (386)
T cd01151 9 LDDLLTEEERAIRDTAREFCQEELAPRVLEAYREEKFDRKIIEEMGELGLLGA-TIKGYGCAGLSSVAYGLIAREVERVD 87 (386)
T ss_pred cccCCCHHHHHHHHHHHHHHHHhcCccHHHHHHhCCCCHHHHHHHHHCCCCcc-CccccCCCCCCHHHHHHHHHHHHhhC
Confidence 66778999999999999999999999888888888899999999999999999 8 999999999999999999999999
Q ss_pred CcchhHHHHhHHHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEeecCCCCCCCCCCceEEEEeCCEEEEeeeeeeecCC
Q 021675 130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209 (309)
Q Consensus 130 ~s~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~lnG~K~~i~~a 209 (309)
.+++..+.+|..++...+..+|+++||++|++++.+|+.++|+++|||++|||+.++.|+|++++|||+|||+|+||+|+
T Consensus 88 ~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~~ 167 (386)
T cd01151 88 SGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWITNS 167 (386)
T ss_pred hhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeEEEEEECCEEEEEEEEEeecCC
Confidence 99887777777666677889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCCCCeEEEEEeCCCCCeeEecccCcccccccCceeEEEceeeeCCCCCcCCCCCHHHHHHhhhHHHH
Q 021675 210 TFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVLAVSRV 289 (309)
Q Consensus 210 ~~a~~~~V~a~~~~~~~~~~flV~~~~pGv~v~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~~~~~~~~~~l~~~r~ 289 (309)
..||+++|++++++++++.+|+||++.||+++.+.|+++|+++++++.++|+||+||++++|+...++......+...|+
T Consensus 168 ~~Ad~~lv~ar~~~~~~~~~flVp~~~~gv~i~~~~~~~G~~g~~s~~v~f~~v~Vp~~~~l~~~~g~~~~~~~~~~~r~ 247 (386)
T cd01151 168 PIADVFVVWARNDETGKIRGFILERGMKGLSAPKIQGKFSLRASITGEIVMDNVFVPEENLLPGAEGLRGPFKCLNNARY 247 (386)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEcCCCCCeecCCCCCCcCCCCCceeEEEEccEEeCHHHcCCccccHHHHHHHHHHHHH
Confidence 99999999999876667889999999999999999999999999999999999999999999877778777788999999
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 021675 290 MVAWQPIGISMGVYDMCHRY 309 (309)
Q Consensus 290 ~~aa~~~G~a~~al~~a~~Y 309 (309)
.+++.++|+++++++.+++|
T Consensus 248 ~~aa~~lG~a~~al~~a~~~ 267 (386)
T cd01151 248 GIAWGALGAAEDCYHTARQY 267 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999876
No 8
>PLN02312 acyl-CoA oxidase
Probab=100.00 E-value=1e-46 Score=369.06 Aligned_cols=307 Identities=21% Similarity=0.216 Sum_probs=253.9
Q ss_pred CCCCCCCCccchHHHhhccCCCCccccc-cccCCCCCCCCC----CCCCCCCcccCCcCCCHHHHHHHHHHHHHHHhhcC
Q 021675 1 MTIHSSKHQDDVDKNARSSYFNLPALDI-SVAFPQATPASK----FPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIA 75 (309)
Q Consensus 1 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 75 (309)
|..+.+.+.+.||+.+|+.||..|.+.. ..-.+.+|.... -...++|+..|...+..+..+.++++++++.+...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sf~~~~l~~~l~g~~~~~r~~~~~~~~~~p~ 80 (680)
T PLN02312 1 MMAGMSPSAAARRAHVLANHLAQSPPSPNSSLTPSPCLQYSPPELNESYAFDVKEMRKLLDGHNLEDRDWLFGLMMQSDL 80 (680)
T ss_pred CCCccchhHHHHHHHHHHHhccCCCCCCcccCCchhhhhcCCccccccCCCCHHHHHHHhCCccHHHHHHHHHHHhcCcc
Confidence 5667777888899999999997642222 122223333211 22236777778887877777888889888875421
Q ss_pred c-------------cH-HHHHHhCCCCHHHHHHHHhCCccccccccCCCCCCCHHHHHHHHHHHHccCCcchhHHHHhHH
Q 021675 76 P-------------IM-AEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSS 141 (309)
Q Consensus 76 ~-------------~~-~~~~~~~~~~~~~~~~l~~~Gl~~~~~~~~GG~g~~~~~~~~v~e~la~~d~s~~~~~~~~~~ 141 (309)
. .. ...++..+++.+.++++.+.|++++.+++- |.+ ++...+.++|++++.|++++..+++|..
T Consensus 81 f~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~~g~~~~~~pe~-g~~-~~~~~~~~~Eel~~~d~s~~~~~~vh~~ 158 (680)
T PLN02312 81 FNSKRRGGRVFVSPDYNQTMEQQREITMKRILYLLERGVFRGWLTET-GPE-AELRKLALLEVIGIYDHSLAIKLGVHFF 158 (680)
T ss_pred ccccccccccccCCccCCCHHHHHHhHHHHHHHHHHhhhcCCCCCCC-CCc-cHHHHHHHHHHHHHhcchHHHHHHhhhh
Confidence 1 11 123456788899999999999999877332 333 6788889999999999998888889988
Q ss_pred HHHHHHHhcCCHHHHHHHhHHHhcccceeEEEeecCCCCCCCCCCceEEEEe--CCEEEEe-----eeeeeecCC-CCCC
Q 021675 142 LAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIGNS-TFAD 213 (309)
Q Consensus 142 ~~~~~l~~~Gt~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~--~~~~~ln-----G~K~~i~~a-~~a~ 213 (309)
++..+|..+||++||++|||++.+|+.++||++|||+||||+++++|+|+++ +|+|+|| |+|+||+|+ ..|+
T Consensus 159 l~~~~I~~~GTeeqk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A~ 238 (680)
T PLN02312 159 LWGGAIKFLGTKRHHDKWLKDTEDYVVKGCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHAT 238 (680)
T ss_pred hHHHHHHHhCCHHHHHHHHHHHhCCCeeeEeeecCCCcCcchhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccCC
Confidence 8889999999999999999999999999999999999999999999999998 5789999 799999999 6799
Q ss_pred EEEEEEEeCC---CCCeEEEEEeC---C---CCCeeEecccCcccccccCceeEEEceeeeCCCCCcCC-----------
Q 021675 214 VLVIFARNTT---TNQINGYLVKK---D---APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG----------- 273 (309)
Q Consensus 214 ~~~V~a~~~~---~~~~~~flV~~---~---~pGv~v~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~----------- 273 (309)
+++|+|++.. ++|+++|+||. + .|||+++++++|+|+++++++.|+|+||+||++++|+.
T Consensus 239 ~~vV~Arl~~~~~~~Gv~~FlV~ird~~~~~~PGV~ig~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~~~V~~~G~y~ 318 (680)
T PLN02312 239 HTIVFSQLHINGKNEGVHAFIAQIRDQDGNICPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKYV 318 (680)
T ss_pred EEEEEEEECCCCCCCCeEEEEEeecCCCCCCCCCEEeccCCCcccccCCCceEEEEccEEECHHHhCCccceeCCCCcee
Confidence 9999999852 36899999983 3 79999999999999999999999999999999999973
Q ss_pred ------CCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 021675 274 ------VNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRY 309 (309)
Q Consensus 274 ------~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~Y 309 (309)
.+++...+..+..+|+.+++.++|++++|+++|++|
T Consensus 319 ~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrY 360 (680)
T PLN02312 319 SAIKDPDQRFGAFLAPLTSGRVTIAVSAIYSSKVGLAIAIRY 360 (680)
T ss_pred cCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888889999999999999999999999999988
No 9
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=100.00 E-value=4.8e-45 Score=342.27 Aligned_cols=258 Identities=27% Similarity=0.471 Sum_probs=237.9
Q ss_pred CcCCCHHHHHHHHHHHHHHHhhcCccHHHHHHhCCCCHH--HHHHHHhCCcccccc-ccCCCCCCCHHHHHHHHHHHHcc
Q 021675 52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFH--VIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARV 128 (309)
Q Consensus 52 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~ 128 (309)
++.+++++.++++.+++|+++++.|...++++.+.+|.+ +|++|.+.||+++.+ ++|||.|+++.+.+.+++++++.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~~~l~~~G~~~~~vP~e~GG~g~~~~~~~~v~e~la~~ 102 (404)
T PLN02519 23 SLLFDDTQLQFKESVQQFAQENIAPHAAAIDATNSFPKDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISRA 102 (404)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcchHHHHhcCCCCchHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHhhh
Confidence 456789999999999999999999988888888888876 699999999999988 99999999999999999999999
Q ss_pred CCcchhHHHHhHHHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEeecCCCCCCCCCCceEEEEeCCEEEEeeeeeeecC
Q 021675 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGN 208 (309)
Q Consensus 129 d~s~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~lnG~K~~i~~ 208 (309)
|+++++.+.+|..++...+..+|+++||++|||++.+|+.++|+++|||++|||...+.|++++++|||+|||+|+||+|
T Consensus 103 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~sEp~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~ 182 (404)
T PLN02519 103 SGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCTN 182 (404)
T ss_pred cccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCcCCCcccceEEEEEeCCEEEEEeEEEeecC
Confidence 99999887778766667788899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCC---CCeEEEEEeCCCCCeeEecccCcccccccCceeEEEceeeeCCCCCcCCC-CCHHHHHHhh
Q 021675 209 STFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVL 284 (309)
Q Consensus 209 a~~a~~~~V~a~~~~~---~~~~~flV~~~~pGv~v~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~~l 284 (309)
+..||+++|+++++++ .++.+|+||.+.|||++.+.|+++|+++++++++.|+||+||++++++.. .++......+
T Consensus 183 a~~ad~~~v~a~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~G~rgt~s~~v~f~~v~Vp~~~~lg~~~~G~~~~~~~~ 262 (404)
T PLN02519 183 GPVAQTLVVYAKTDVAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGQEGKGVYVMMSGL 262 (404)
T ss_pred CCcCCEEEEEEEeCCCCCCCeeEEEEEeCCCCCeeccCcccccCCCCCCeeEEEeCeEEecHHHcCCCCCccHHHHHHHH
Confidence 9999999999997532 45789999999999999999999999999999999999999999999875 6777777788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcC
Q 021675 285 AVSRVMVAWQPIGISMGVYDMCHRY 309 (309)
Q Consensus 285 ~~~r~~~aa~~~G~a~~al~~a~~Y 309 (309)
+..|+.+++.++|+++++++.+++|
T Consensus 263 ~~~r~~~aa~~lG~a~~al~~a~~~ 287 (404)
T PLN02519 263 DLERLVLAAGPLGLMQACLDVVLPY 287 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999876
No 10
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=100.00 E-value=7.5e-45 Score=338.09 Aligned_cols=255 Identities=33% Similarity=0.494 Sum_probs=236.7
Q ss_pred CCHHHHHHHHHHHHHHHhhcCccHHHHHHhCCCCHHHHHHHHhCCcccccc-ccCCCCCCCHHHHHHHHHHHHccCCcch
Q 021675 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCS 133 (309)
Q Consensus 55 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~s~~ 133 (309)
++++++++++.+++|+++++.|.+.+.++.+.+|.+.|+.|.+.||+++.+ ++|||.|+++.+...+++++++.|++++
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~~~~ 81 (376)
T cd01156 2 LDDEIEMLRQSVREFAQKEIAPLAAKIDRDNEFPRDLWRKMGKLGLLGITAPEEYGGSGMGYLAHVIIMEEISRASGSVA 81 (376)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHhCCCCcccCCHhhCCCCCCHHHHHHHHHHHhccchhHH
Confidence 578899999999999999999988888778889999999999999999988 9999999999999999999999999998
Q ss_pred hHHHHhHHHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEeecCCCCCCCCCCceEEEEeCCEEEEeeeeeeecCCCCCC
Q 021675 134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD 213 (309)
Q Consensus 134 ~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~lnG~K~~i~~a~~a~ 213 (309)
+.+..|..++...|..+|+++||++|++++.+|++++++++|||++|||..++.|++++++|||+|||+|+||+|+..||
T Consensus 82 ~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~ 161 (376)
T cd01156 82 LSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGPDAD 161 (376)
T ss_pred HHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhCeEEEEEeCCEEEEEEEEEEecCCCcCC
Confidence 87777766666678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCC---CCeEEEEEeCCCCCeeEecccCcccccccCceeEEEceeeeCCCCCcCCC-CCHHHHHHhhhHHHH
Q 021675 214 VLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRV 289 (309)
Q Consensus 214 ~~~V~a~~~~~---~~~~~flV~~~~pGv~v~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~~l~~~r~ 289 (309)
+++|+++++++ .++.+|+||.+.|||++.+.|+++|+++++++++.|+||+||++++|+.. .++......+...|+
T Consensus 162 ~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~ 241 (376)
T cd01156 162 TLVVYAKTDPSAGAHGITAFIVEKGMPGFSRAQKLDKLGMRGSNTCELVFEDCEVPEENILGGENKGVYVLMSGLDYERL 241 (376)
T ss_pred EEEEEEEeCCCCCCCceEEEEEcCCCCCeecCCccccccCCCCCceEEEeCceEecHHHcCCCCCchHHHHHHHHhhHHH
Confidence 99999997533 46789999999999999999999999999999999999999999999875 677777888999999
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 021675 290 MVAWQPIGISMGVYDMCHRY 309 (309)
Q Consensus 290 ~~aa~~~G~a~~al~~a~~Y 309 (309)
.+++.++|+++++++.+++|
T Consensus 242 ~~aa~~lG~a~~al~~~~~~ 261 (376)
T cd01156 242 VLAGGPIGIMQAALDVAIPY 261 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999876
No 11
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=100.00 E-value=8.9e-45 Score=337.51 Aligned_cols=254 Identities=30% Similarity=0.484 Sum_probs=236.0
Q ss_pred CCHHHHHHHHHHHHHHHhhcCccHHHHHHhCCCCHHHHHHHHhCCcccccc-ccCCCCCCCHHHHHHHHHHHHccCCcch
Q 021675 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCS 133 (309)
Q Consensus 55 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~s~~ 133 (309)
+++++.++++.+++|+++++.|...+++..+.+|.++|++|.++||+++.+ ++|||.|.++.+.+.+++++++.|++++
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l~~~~~~~~ 80 (375)
T cd01162 1 LNEEQRAIQEVARAFAAKEMAPHAADWDQKKHFPVDVLRKAAELGFGGIYIRDDVGGSGLSRLDASIIFEALSTGCVSTA 80 (375)
T ss_pred CCHHHHHHHHHHHHHHHHhCCcchhhHHhhCCCCHHHHHHHHHCCCCCcCCCHhhCCCCCCHHHHHHHHHHHHhhchhHH
Confidence 478899999999999999999988888888899999999999999999988 9999999999999999999999999988
Q ss_pred hHHHHhHHHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEeecCCCCCCCCCCceEEEEeCCEEEEeeeeeeecCCCCCC
Q 021675 134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD 213 (309)
Q Consensus 134 ~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~lnG~K~~i~~a~~a~ 213 (309)
+.+.+|. ++..++..+|+++||++|++++.+|+.++++++|||++|||...+.|++++++++|+|||+|+||+|+..||
T Consensus 81 ~~~~~~~-~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad 159 (375)
T cd01162 81 AYISIHN-MCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAGDSD 159 (375)
T ss_pred HHHHHhh-hHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCCCCChhhCEEEEEEeCCEEEEEEEEEEecCCCCCC
Confidence 7777775 556678889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCC--CCeEEEEEeCCCCCeeEecccCcccccccCceeEEEceeeeCCCCCcCCC-CCHHHHHHhhhHHHHH
Q 021675 214 VLVIFARNTTT--NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVM 290 (309)
Q Consensus 214 ~~~V~a~~~~~--~~~~~flV~~~~pGv~v~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~~l~~~r~~ 290 (309)
+++|+++.+++ .++.+|+||++.||+++.+.|+++|+++++++++.|+||+||.+++|+.. ++++.....+...|+.
T Consensus 160 ~~~v~a~~~~~~~~~~~~~lv~~~~~gv~v~~~~~~~g~~~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~ 239 (375)
T cd01162 160 VYVVMARTGGEGPKGISCFVVEKGTPGLSFGANEKKMGWNAQPTRAVIFEDCRVPVENRLGGEGQGFGIAMAGLNGGRLN 239 (375)
T ss_pred EEEEEEEecCCCCCceEEEEEeCCCCCeecCCcccccCCCCCCeeEEEECceEecHHHcCCCCCchHHHHHHHHHHHHHH
Confidence 99999997532 46789999999999999999999999999999999999999999999875 6787777888999999
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 021675 291 VAWQPIGISMGVYDMCHRY 309 (309)
Q Consensus 291 ~aa~~~G~a~~al~~a~~Y 309 (309)
+++.++|+++++++.+++|
T Consensus 240 ~aa~~lG~a~~al~~~~~~ 258 (375)
T cd01162 240 IASCSLGAAQAALDLARAY 258 (375)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876
No 12
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-44 Score=337.37 Aligned_cols=255 Identities=21% Similarity=0.322 Sum_probs=228.2
Q ss_pred CCcCCCHHHHHHHHHHHHHHHhhcC-ccHHHHHHhCCCCHHHHHHHHhCCcccccc-ccCCCCCCCHHHHHHHHHHHHcc
Q 021675 51 FDDLLTSEEQAVRMKVRECMEKEIA-PIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARV 128 (309)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~ 128 (309)
|++.+++++..+++.+++|+++.+. +...++++.+.+|.++|++|+++||+++.+ ++|||.|.++.+.+.+++++++.
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~la~~ 80 (381)
T PRK12341 1 MDFSLTEEQELLLASIRELITRNFPEEYFRTCDENGTYPREFMRALADNGISMLGVPEEFGGTPADYVTQMLVLEEVSKC 80 (381)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHHHhCCCCHHHHHHHHHCCCCCcCCChhhCCCCcCHHHHHHHHHHHhhc
Confidence 4567899999999999999999876 456667778889999999999999999988 99999999999999999999999
Q ss_pred CCcchhHHHHhHHHHHHHHHhcCCHHHHHHHhHHH-hcccceeEEEeecCCCCCCCCCCceEEEEeCCEEEEeeeeeeec
Q 021675 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSL-AQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIG 207 (309)
Q Consensus 129 d~s~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~~-~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~lnG~K~~i~ 207 (309)
|.+. +. .++.++...+..+|+++||++||+++ .+|+.++++++|||++|||+..++|++++++|+|+|||+|+|||
T Consensus 81 ~~~~-~~--~~~~~~~~~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~gg~~lnG~K~~is 157 (381)
T PRK12341 81 GAPA-FL--ITNGQCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYLNGQKTFIT 157 (381)
T ss_pred ChhH-HH--HhhhhhHHHHHHhCCHHHHHHHhHHHhhCCCeEEEEEecCCCCCCchhhCeeEEEEeCCEEEEEeEEEEEc
Confidence 9873 32 23334556678899999999999999 59998899999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCCC----CCeEEEEEeCCCCCeeEecccCcccccccCceeEEEceeeeCCCCCcCCC-CCHHHHHH
Q 021675 208 NSTFADVLVIFARNTTT----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSK 282 (309)
Q Consensus 208 ~a~~a~~~~V~a~~~~~----~~~~~flV~~~~pGv~v~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~ 282 (309)
|+..||+++|+|+++++ .++.+|+||.+.|||++. .|+++|+++++++.++|+||+||++++|+.. +++.....
T Consensus 158 ~~~~Ad~~~v~a~~~~~~~~~~~~~~~lV~~~~~gv~~~-~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~ 236 (381)
T PRK12341 158 GAKEYPYMLVLARDPQPKDPKKAFTLWWVDSSKPGIKIN-PLHKIGWHMLSTCEVYLDNVEVEESDLVGEEGMGFLNVMY 236 (381)
T ss_pred CCccCCEEEEEEEcCCCCCCCCceEEEEEeCCCCceeec-ccccccCCCCCceEEEECcEEecHHHcCCCCChHHHHHHH
Confidence 99999999999997532 357899999999999995 5899999999999999999999999999875 57777777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 021675 283 VLAVSRVMVAWQPIGISMGVYDMCHRY 309 (309)
Q Consensus 283 ~l~~~r~~~aa~~~G~a~~al~~a~~Y 309 (309)
.++..|+.++++++|+++++++.+++|
T Consensus 237 ~~~~~r~~~aa~~lG~a~~al~~~~~~ 263 (381)
T PRK12341 237 NFEMERLINAARSLGFAECAFEDAARY 263 (381)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999876
No 13
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.8e-44 Score=339.05 Aligned_cols=255 Identities=26% Similarity=0.389 Sum_probs=235.4
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcCccHHHHHHhCCCCHHHHHHHHhCCcccccc-ccCCCCCCCHHHHHHHHHHHHccCCc
Q 021675 53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDAS 131 (309)
Q Consensus 53 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~s 131 (309)
+.+++++.++++.+++|+++++.|...+.++.+.+|.++|++|.+.||+++.+ ++|||.|+++.+...+.|++++.|++
T Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s 114 (410)
T PTZ00461 35 YNPTPEHAALRETVAKFSREVVDKHAREDDINMHFNRDLFKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHHELSKYDPG 114 (410)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCccHHHHhhhCCCCHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHHhhCch
Confidence 46889999999999999999999998888878899999999999999999988 99999999999999999999999988
Q ss_pred chhHHHHhHHHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEeecCCCCCCCCCCceEEEEeCC-EEEEeeeeeeecCCC
Q 021675 132 CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEG-GWILEGQKRWIGNST 210 (309)
Q Consensus 132 ~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~-~~~lnG~K~~i~~a~ 210 (309)
++..+..|..++...+..+|+++||++||+++.+|+.++++++|||++|||..++.|+++++++ +|+|||+|+||+|+.
T Consensus 115 ~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~gg~~L~G~K~~vs~a~ 194 (410)
T PTZ00461 115 FCLAYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITNGT 194 (410)
T ss_pred HHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChHHCeEEEEEcCCCeEEEEeEEEeECCCc
Confidence 8776777765556678889999999999999999999999999999999999999999999764 799999999999999
Q ss_pred CCCEEEEEEEeCCCCCeEEEEEeCCCCCeeEecccCcccccccCceeEEEceeeeCCCCCcCCC-CCHHHHHHhhhHHHH
Q 021675 211 FADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRV 289 (309)
Q Consensus 211 ~a~~~~V~a~~~~~~~~~~flV~~~~pGv~v~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~~l~~~r~ 289 (309)
.||+++|+++++ +++.+|+||.+.|||++.+.|+++|+++++++++.|+||+||++++|+.. +++......+...|+
T Consensus 195 ~Ad~~lv~a~~~--~~~~~flVp~~~~Gv~v~~~~~~~G~r~~~~~~l~f~~v~Vp~~~~lg~~g~g~~~~~~~~~~~r~ 272 (410)
T PTZ00461 195 VADVFLIYAKVD--GKITAFVVERGTKGFTQGPKIDKCGMRASHMCQLFFEDVVVPAENLLGEEGKGMVGMMRNLELERV 272 (410)
T ss_pred cCCEEEEEEEeC--CceEEEEEeCCCCCeecCCCCcccCCCCCceEEEEEcceecCHHHhCCCCCccHHHHHHHHHHHHH
Confidence 999999999975 45789999999999999999999999999999999999999999999875 677777788899999
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 021675 290 MVAWQPIGISMGVYDMCHRY 309 (309)
Q Consensus 290 ~~aa~~~G~a~~al~~a~~Y 309 (309)
.+++.++|+++++++.+++|
T Consensus 273 ~~aa~~~G~a~~al~~a~~y 292 (410)
T PTZ00461 273 TLAAMAVGIAERSVELMTSY 292 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999876
No 14
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=100.00 E-value=2e-44 Score=335.54 Aligned_cols=254 Identities=28% Similarity=0.456 Sum_probs=231.5
Q ss_pred CCHHHHHHHHHHHHHHHhhcCccHHHHHHhCCCCHHHHHHHHhCCcccccc-ccCCCCCCCHHHHHHHHHHHHccCCcch
Q 021675 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCS 133 (309)
Q Consensus 55 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~s~~ 133 (309)
+++++.++++.+++|+++.+.|...++++.+.+|.++|++|.++||+++.+ ++|||.|+++.+.+.++|++++.|++++
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~~~~ 80 (378)
T cd01157 1 LTEQQKEFQETARKFAREEIIPVAAEYDKSGEYPWPLIKRAWELGLMNTHIPEDCGGLGLGTFDTCLITEELAYGCTGVQ 80 (378)
T ss_pred CCHHHHHHHHHHHHHHHHhcccchHHHHhhCCCCHHHHHHHHhCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhhhHHH
Confidence 467899999999999999999988888888889999999999999999988 9999999999999999999999998877
Q ss_pred hHHHHhHHHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEeecCCCCCCCCCCceEEEEeCCEEEEeeeeeeecCCCCCC
Q 021675 134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD 213 (309)
Q Consensus 134 ~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~lnG~K~~i~~a~~a~ 213 (309)
+.+..+. ++...+..+|+++||++||+++.+|+.++++++|||+.|||..++.|++++++|+|+|||+|+||+|+..||
T Consensus 81 ~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad 159 (378)
T cd01157 81 TAIEANS-LGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKAN 159 (378)
T ss_pred HHHHhhh-hhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhcCeEEEEEcCCEEEEeeEEEeecCCccCC
Confidence 6554443 445566778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCC------CCeEEEEEeCCCCCeeEecccCcccccccCceeEEEceeeeCCCCCcCCC-CCHHHHHHhhhH
Q 021675 214 VLVIFARNTTT------NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAV 286 (309)
Q Consensus 214 ~~~V~a~~~~~------~~~~~flV~~~~pGv~v~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~~l~~ 286 (309)
+++|+++++++ .++.+|+||.+.||+++.+.|.++|++++++++++|+||+||.+++|+.. +++......+..
T Consensus 160 ~~lv~a~~~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~s~~~~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~ 239 (378)
T cd01157 160 WYFLLARSDPDPKCPASKAFTGFIVEADTPGIQPGRKELNMGQRCSDTRGITFEDVRVPKENVLIGEGAGFKIAMGAFDK 239 (378)
T ss_pred EEEEEEEeCCcccCCCCCceEEEEEcCCCCCeeccCcccccCCCCCCceEEEeccEEECHHHcCCCCCchHHHHHHHHhh
Confidence 99999997532 35789999999999999999999999999999999999999999999865 678778888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q 021675 287 SRVMVAWQPIGISMGVYDMCHRY 309 (309)
Q Consensus 287 ~r~~~aa~~~G~a~~al~~a~~Y 309 (309)
.|+.+++.++|+++++++.+++|
T Consensus 240 ~r~~~aa~~lG~a~~~l~~~~~~ 262 (378)
T cd01157 240 TRPPVAAGAVGLAQRALDEATKY 262 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999876
No 15
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=3.1e-44 Score=334.31 Aligned_cols=256 Identities=25% Similarity=0.332 Sum_probs=228.5
Q ss_pred CCcCCCHHHHHHHHHHHHHHHhhc-CccHHHHHHhCCCCHHHHHHHHhCCcccccc-ccCCCCCCCHHHHHHHHHHHHcc
Q 021675 51 FDDLLTSEEQAVRMKVRECMEKEI-APIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARV 128 (309)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~ 128 (309)
|++.++++++++++.+++|+++++ .+...+.++.+.+|.+.|++|.+.||+++.+ ++|||.|+++.+.+.+++++++.
T Consensus 1 m~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~la~~ 80 (380)
T PRK03354 1 MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRL 80 (380)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhccCChhHHHHHhhCCCCHHHHHHHHHCCCCccCCChhhCCCCCCHHHHHHHHHHHHhc
Confidence 456789999999999999999876 4555667777889999999999999999988 99999999999999999999999
Q ss_pred CCcchhHHHHhHHHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEeecCCCCCCCCCCceEEEEeCCEEEEeeeeeeecC
Q 021675 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGN 208 (309)
Q Consensus 129 d~s~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~lnG~K~~i~~ 208 (309)
|+|+++.+.++. ....+..+|+++||++||+++.+|+.+.++++|||+.|||...+.|++++++|+|+|||+|+||+|
T Consensus 81 ~~s~~~~~~~~~--~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE~~~gs~~~~~~t~a~~~~~g~~lnG~K~fis~ 158 (380)
T PRK03354 81 GAPTYVLYQLPG--GFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFITS 158 (380)
T ss_pred CcchHHHHHhcc--cHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCEEEEEEeCCEEEEeeEEEEEcC
Confidence 988765554442 245678889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCC---CCeEEEEEeCCCCCeeEecccCcccccccCceeEEEceeeeCCCCCcCCC-CCHHHHHHhh
Q 021675 209 STFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVL 284 (309)
Q Consensus 209 a~~a~~~~V~a~~~~~---~~~~~flV~~~~pGv~v~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~~l 284 (309)
+..||+++|+++++.+ .++.+|+||.+.||+++. .|+++|+++++++++.|+||+||.+++++.. +++......+
T Consensus 159 ~~~ad~~~v~a~~~~~~~~~~~~~~lv~~~~~gv~~~-~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~~~~ 237 (380)
T PRK03354 159 SAYTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKVT-KLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEF 237 (380)
T ss_pred CCcCCEEEEEEEcCCCCCCCceeEEEEECCCCceEec-cccccCCCCCCeEEEEEccEEecHHHcCCCCChHHHHHHHHH
Confidence 9999999999997422 346789999999999986 5899999999999999999999999999875 5676666778
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcC
Q 021675 285 AVSRVMVAWQPIGISMGVYDMCHRY 309 (309)
Q Consensus 285 ~~~r~~~aa~~~G~a~~al~~a~~Y 309 (309)
+..|+.+++.++|+++++++.+++|
T Consensus 238 ~~~r~~~aa~~~G~a~~al~~a~~~ 262 (380)
T PRK03354 238 DHERFLVALTNYGTAMCAFEDAARY 262 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999876
No 16
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=100.00 E-value=2.4e-44 Score=334.20 Aligned_cols=251 Identities=29% Similarity=0.428 Sum_probs=230.7
Q ss_pred HHHHHHHHHHHHHHhhcCccHHHHHHhCCCCHHHHHHHHhCCcccccc-ccCCCCCCCHHHHHHHHHHHHccCCcchhHH
Q 021675 58 EEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFI 136 (309)
Q Consensus 58 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~s~~~~~ 136 (309)
++.++++.+++|+++++.|...++++.+.+|.++|++|+++||+++.+ ++|||.|.++.+...+++++++.+.+ ++.+
T Consensus 2 ~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~-~~~~ 80 (372)
T cd01160 2 EHDAFRDVVRRFFAKEVAPFHHEWEKAGEVPREVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELARAGGS-GPGL 80 (372)
T ss_pred hHHHHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHhCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHhcch-HHHH
Confidence 678999999999999998888888888889999999999999999988 99999999999999999999996544 6666
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEeecCCCCCCCCCCceEEEEeCCEEEEeeeeeeecCCCCCCEEE
Q 021675 137 LVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLV 216 (309)
Q Consensus 137 ~~~~~~~~~~l~~~Gt~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~lnG~K~~i~~a~~a~~~~ 216 (309)
.+|..++...+..+|+++||++||+++.+|+.++|+++|||++|||...+.|+++++++||+|||+|+||+|+..||+++
T Consensus 81 ~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~Ad~~~ 160 (372)
T cd01160 81 SLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGMLADVVI 160 (372)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCeEEEEEeCCEEEEeeEEEEecCCCccCEEE
Confidence 66765666788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCC----CCeEEEEEeCCCCCeeEecccCcccccccCceeEEEceeeeCCCCCcCCC-CCHHHHHHhhhHHHHHH
Q 021675 217 IFARNTTT----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMV 291 (309)
Q Consensus 217 V~a~~~~~----~~~~~flV~~~~pGv~v~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~~l~~~r~~~ 291 (309)
|.++++++ +++.+|+||.+.||+++.+.|+++|++++++++++|+||+||++++|+.. .++......+...|+.+
T Consensus 161 v~a~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~~~~~ 240 (372)
T cd01160 161 VVARTGGEARGAGGISLFLVERGTPGFSRGRKLKKMGWKAQDTAELFFDDCRVPAENLLGEENKGFYYLMQNLPQERLLI 240 (372)
T ss_pred EEEEeCCCCCCCCceEEEEEeCCCCCeecCCccccccCCCCCeEEEEecceEccHHHcCCCCCchHHHHHHHHHHHHHHH
Confidence 99997532 46889999999999999999999999999999999999999999999875 57777788889999999
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 021675 292 AWQPIGISMGVYDMCHRY 309 (309)
Q Consensus 292 aa~~~G~a~~al~~a~~Y 309 (309)
++.++|+++++++.+++|
T Consensus 241 aa~~lG~a~~al~~a~~~ 258 (372)
T cd01160 241 AAGALAAAEFMLEETRNY 258 (372)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999876
No 17
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=100.00 E-value=4.4e-44 Score=332.49 Aligned_cols=253 Identities=27% Similarity=0.365 Sum_probs=230.8
Q ss_pred CCHHHHHHHHHHHHHHHhhcCccHHHHHHhCCCCHHHHHHHHhCCcccccc-ccCCCCCCCHHHHHHHHHHHHccCCcch
Q 021675 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCS 133 (309)
Q Consensus 55 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~s~~ 133 (309)
+++++..+++.+++|+++.+.|...+.++.+.+|.++|++|.+.||+++.+ ++|||.|+++.+.+.+.+++++.|++++
T Consensus 1 ~t~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~ 80 (372)
T TIGR03207 1 LNEDLQALADTARRFARERIAPGFKERDKTRVLDRELMRDMGEMGFIGPELPEEHGGLGMGCLAAGVIHEQIARADLSMS 80 (372)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHHCCCCcccCChhHCCCCCCHHHHHHHHHHHHhhCccHH
Confidence 467889999999999999999998888888899999999999999999988 9999999999999999999999999987
Q ss_pred hHHHHhHHHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEeecCCCCCCCCCCceEEEEeCCEEEEeeeeeeecCCCCCC
Q 021675 134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD 213 (309)
Q Consensus 134 ~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~lnG~K~~i~~a~~a~ 213 (309)
+....+ .++...+..+|+++||++||+++.+|+.++++++|||++|||..++.|++++++|+|+|||+|+||+|+..||
T Consensus 81 ~~~~~~-~~~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~k~~vs~~~~ad 159 (372)
T TIGR03207 81 YVNLLA-SLNGQILAQHARPEIAKPWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISAADQAD 159 (372)
T ss_pred HHHHhh-hHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCcChhhCEEEEEEeCCEEEEEEEEEEEcCCCcCC
Confidence 654333 3556678889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCC----CCCeEEEEEeCCCCCeeEecccCcccccccCceeEEEceeeeCCCCCcCCC-CCHHHHHHhhhHHH
Q 021675 214 VLVIFARNTT----TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSR 288 (309)
Q Consensus 214 ~~~V~a~~~~----~~~~~~flV~~~~pGv~v~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~~l~~~r 288 (309)
+++|++++++ ..++.+|+||.+.|||++. .|+++|++++++++++|+||+||++++|+.. +++......++..|
T Consensus 160 ~~lv~a~~~~~~~~~~~~~~~lVp~~~~gv~~~-~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r 238 (372)
T TIGR03207 160 AAVVFARTGSEAEGARGISAFLVPMDLPGITRN-RFDCHGQRAIGRGSIFFENVRVPADHMLGNEGQGFVQVMQGFDFSR 238 (372)
T ss_pred EEEEEEEcCCCCCCCCceEEEEEcCCCCCeecC-cchhccCCCCCeeEEEECceeccHHHcCCCCChhHHHHHHHHHHHH
Confidence 9999999743 1357899999999999975 5899999999999999999999999999875 67877778899999
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 021675 289 VMVAWQPIGISMGVYDMCHRY 309 (309)
Q Consensus 289 ~~~aa~~~G~a~~al~~a~~Y 309 (309)
+.++++++|+++++|+.+++|
T Consensus 239 ~~~a~~~~G~a~~al~~a~~~ 259 (372)
T TIGR03207 239 ALIGLQVLAVARAALDETWRY 259 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887
No 18
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=100.00 E-value=3.6e-44 Score=336.96 Aligned_cols=259 Identities=28% Similarity=0.395 Sum_probs=234.8
Q ss_pred cccCCcCCCHHHHHHHHHHHHHHHhhcCccHHHHHHhCCCCHHHHHHHHhCCcccccc-ccCCCCCCCHHHHHHHHHHHH
Q 021675 48 YYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIA 126 (309)
Q Consensus 48 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la 126 (309)
|.-|+..+++++.++++.+++|+++++.|. ++++.+.+|.++|++|+++||+++.+ ++|||.|+++.+...++|+++
T Consensus 20 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~v~e~l~ 97 (409)
T cd01161 20 PSVLTEEQTEELNMLVGPVEKFFEEVNDPA--KNDQLEKIPRKTLTQLKELGLFGLQVPEEYGGLGLNNTQYARLAEIVG 97 (409)
T ss_pred ccccCccCCHHHHHHHHHHHHHHHHhCCch--hhccccCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHh
Confidence 556778889999999999999999998875 34566789999999999999999988 999999999999999999999
Q ss_pred ccCCcchhHHHHhHHHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEeecCCCCCCCCCCceEEEE--eCCEEEEeeeee
Q 021675 127 RVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATK--VEGGWILEGQKR 204 (309)
Q Consensus 127 ~~d~s~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~--~~~~~~lnG~K~ 204 (309)
+ |+++++.+.+|..++...+..+|+++|+++|++++.+|+.++++++|||++|||...+.|++++ ++++|+|||+|+
T Consensus 98 ~-~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gs~~~~~~t~a~~~~~g~g~~l~G~K~ 176 (409)
T cd01161 98 M-DLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFALTEPSSGSDAASIRTTAVLSEDGKHYVLNGSKI 176 (409)
T ss_pred h-ChHHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHhCCCeeEEEEecCCCCCCChhhCeeEEEEcCCCCEEEEEeEEE
Confidence 9 9998887777766655567889999999999999999999999999999999999999999998 455799999999
Q ss_pred eecCCCCCCEEEEEEEeCC---C----CCeEEEEEeCCCCCeeEecccCcccccccCceeEEEceeeeCCCCCcCCC-CC
Q 021675 205 WIGNSTFADVLVIFARNTT---T----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NS 276 (309)
Q Consensus 205 ~i~~a~~a~~~~V~a~~~~---~----~~~~~flV~~~~pGv~v~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~ 276 (309)
||+|+..||+++|+|++++ + .++.+|+||.+.|||++.+.|+++|++++++++++|+||+||++++|+.. ++
T Consensus 177 ~vs~~~~Ad~~lv~ar~~~~~~~g~~~~~~~~flvp~~~~gv~~~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~g~g 256 (409)
T cd01161 177 WITNGGIADIFTVFAKTEVKDATGSVKDKITAFIVERSFGGVTNGPPEKKMGIKGSNTAEVYFEDVKIPVENVLGEVGDG 256 (409)
T ss_pred eecCCCcCCEEEEEEEcCCCCCCCCCCCceEEEEEeCCCCCcccCCcccccCCCCCCceEEEeccEEECHHHcCCCCChH
Confidence 9999999999999999751 1 45789999999999999999999999999999999999999999999875 57
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 021675 277 FQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRY 309 (309)
Q Consensus 277 ~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~Y 309 (309)
+......++..|+.+++.++|+++++++.+++|
T Consensus 257 ~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~ 289 (409)
T cd01161 257 FKVAMNILNNGRFGMGAALIGTMKRCIEKAVDY 289 (409)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788899999999999999999999999876
No 19
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=9.7e-44 Score=330.40 Aligned_cols=252 Identities=21% Similarity=0.256 Sum_probs=223.2
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcCccHHH--HHHhCCCCHHHHHHHHhCCcccccc-ccCCCCCCCHHHHHHHHHHHHccC
Q 021675 53 DLLTSEEQAVRMKVRECMEKEIAPIMAE--YWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVD 129 (309)
Q Consensus 53 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d 129 (309)
+.++++|.++++.+++|+++++.+...+ .++.+.||.++|++|.++||+++.+ ++|||.|+++.+.+.++|++++.+
T Consensus 2 ~~~~~eq~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~e~G~~~l~vPe~~GG~G~~~~~~~~v~eel~~~~ 81 (378)
T TIGR03203 2 FDLSEEQRLLKESVEGLLKTSYDFDSRKKYQKEKGGWSKAVWGKLAEQGLLGLPFSEADGGFGAGSVETMIVMEALGKAL 81 (378)
T ss_pred CCCCHHHHHHHHHHHHHHHhhCCHHHHHHHHhccCCCCHHHHHHHHHCCCcccccchhcCCCCCCHHHHHHHHHHHhCcc
Confidence 3578999999999999999988776543 3456789999999999999999988 999999999999999999999986
Q ss_pred CcchhHHHHhHHHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEeecCCCCCCCCCCceEEEEeCCEEEEeeeeeeecCC
Q 021675 130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209 (309)
Q Consensus 130 ~s~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~lnG~K~~i~~a 209 (309)
.+.. . ..+..++..++..+|+++||++|||++.+|+.++++++|||++|||..++.|++++++|+|+|||+|.||+|+
T Consensus 82 ~~~~-~-~~~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~~g~~~~l~G~K~~vt~a 159 (378)
T TIGR03203 82 VLEP-Y-LATVVIGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNG 159 (378)
T ss_pred cchH-H-HHHHHHHHHHHHHcCCHHHHHHHHHHHhCCChhheeeecCCCCCCCcccceEEEEEcCCEEEEEeEEEEecCC
Confidence 5432 2 2233345567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCC----CCCeEEEEEeCCCCCeeEecccCcccccccCceeEEEceeeeCCCCCcCCC-CCHHHHHHhh
Q 021675 210 TFADVLVIFARNTT----TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVL 284 (309)
Q Consensus 210 ~~a~~~~V~a~~~~----~~~~~~flV~~~~pGv~v~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~~l 284 (309)
..||+++|++++++ .+++.+|+||.+.||+++.+.+.++|+ ..++++|+||+||.+++|+.. +++......+
T Consensus 160 ~~Ad~~lv~ar~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~g~---~~~~l~fd~v~vp~~~~lg~~~~g~~~~~~~l 236 (378)
T TIGR03203 160 ETADTLIVTARTKGARRDRTGIGVFLVPAGAKGVTIKGYPTQDGL---HAADITFTGVVVGADAAIGDPENALPLIERVV 236 (378)
T ss_pred ccCCEEEEEEecCCCCCCCCceEEEEEECCCCCceeccccccCCC---ceeeEEECCCcccHHhhcCCcchHHHHHHHHH
Confidence 99999999999742 257899999999999999887777776 468999999999999999875 6888889999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcC
Q 021675 285 AVSRVMVAWQPIGISMGVYDMCHRY 309 (309)
Q Consensus 285 ~~~r~~~aa~~~G~a~~al~~a~~Y 309 (309)
+..|+.+++.++|+++++++.+++|
T Consensus 237 ~~~r~~~aa~~~G~a~~al~~a~~y 261 (378)
T TIGR03203 237 DDARAALCAEAVGLMDESLKTTVEY 261 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987
No 20
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=100.00 E-value=8e-43 Score=324.08 Aligned_cols=252 Identities=41% Similarity=0.614 Sum_probs=233.8
Q ss_pred HHHHHHHHHHHHHHhhcCccHHHHHHhCCCCHHHHHHHHhCCcccccc-ccCCCCCCCHHHHHHHHHHHHccCCcchhHH
Q 021675 58 EEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFI 136 (309)
Q Consensus 58 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~s~~~~~ 136 (309)
++.++++.+++|+.+++.+.+.+.++.+.+|.+.|+.|++.||+++.+ ++|||.|.++.+...+++++++.|+|+++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~~~~~s~~~~~ 81 (373)
T cd01158 2 EHQMIRKTVRDFAEKEIAPLAAEMDEKGEFPREVIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAIEELAKVDASVAVIV 81 (373)
T ss_pred hHHHHHHHHHHHHHHhcccchHHHhhcCCCCHHHHHHHHhCCCCcccCCHHHCCCCCCHHHHHHHHHHHHhhCccHHHHH
Confidence 578999999999999888888778778889999999999999999988 9999999999999999999999999999888
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEeecCCCCCCCCCCceEEEEeCCEEEEeeeeeeecCCCCCCEEE
Q 021675 137 LVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLV 216 (309)
Q Consensus 137 ~~~~~~~~~~l~~~Gt~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~lnG~K~~i~~a~~a~~~~ 216 (309)
.+|..++...+..+|+++|+++|++++.+|+.++++++|||++||+...+.+++++++|||+|||+|+|++|+..||+++
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se~~~gs~~~~~~~~a~~~~~g~~l~G~k~~vsg~~~ad~~l 161 (373)
T cd01158 82 SVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEADFYI 161 (373)
T ss_pred HHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCHHHCEeEEEEeCCEEEEeeEEEEEcCCCcCCEEE
Confidence 88876666788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCC---CCeEEEEEeCCCCCeeEecccCcccccccCceeEEEceeeeCCCCCcCCC-CCHHHHHHhhhHHHHHHH
Q 021675 217 IFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVA 292 (309)
Q Consensus 217 V~a~~~~~---~~~~~flV~~~~pGv~v~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~~l~~~r~~~a 292 (309)
|.++.+++ .++.+|+||.+.|||++.+.|+++|+++++++.+.|+||+||++++|+.. .++......+...|+.++
T Consensus 162 v~a~~~~~~~~~~~~~~lvp~~~~gv~i~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~~ 241 (373)
T cd01158 162 VFAVTDPSKGYRGITAFIVERDTPGLSVGKKEDKLGIRGSSTTELIFEDVRVPKENILGEEGEGFKIAMQTLDGGRIGIA 241 (373)
T ss_pred EEEEcCCCCCCCceEEEEEcCCCCCeecCCcccccccCCCCceEEEeCcEEecHHHcCCCCCchHHHHHHHHHHHHHHHH
Confidence 99987533 45789999999999999999999999999999999999999999999875 577777788889999999
Q ss_pred HHHHHHHHHHHHHHhcC
Q 021675 293 WQPIGISMGVYDMCHRY 309 (309)
Q Consensus 293 a~~~G~a~~al~~a~~Y 309 (309)
+.++|+++++++.+++|
T Consensus 242 a~~lG~a~~~l~~~~~~ 258 (373)
T cd01158 242 AQALGIAQAALDAAVDY 258 (373)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999876
No 21
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=1.1e-42 Score=342.46 Aligned_cols=249 Identities=27% Similarity=0.324 Sum_probs=220.6
Q ss_pred CCHHHHHHHHH-HHHHHHhhcCccHHHHHH---hCCCCHHHHHHHHhCCcccccc-ccCCCCCCCHHHHHHHHHHHHccC
Q 021675 55 LTSEEQAVRMK-VRECMEKEIAPIMAEYWE---KAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVD 129 (309)
Q Consensus 55 l~~~~~~l~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d 129 (309)
++++++++++. +++|++. ..++++ .+++|.++|++++++||+++.+ ++|||.|++..+.+.++|++++.|
T Consensus 79 Ls~ee~~~~d~~v~~l~~~-----~~~~~~~~~~~~~P~e~w~~L~e~G~~gl~IPeeyGG~Gls~~~~a~v~eeLg~~~ 153 (777)
T PRK09463 79 LTAEEQAFLDGPVEELCRM-----VNDWQITHELADLPPEVWQFIKEHGFFGMIIPKEYGGLEFSAYAHSRVLQKLASRS 153 (777)
T ss_pred CCHHHHHHHHHHHHHHHHH-----HHHHHHhccccCCCHHHHHHHHHCCCCcCCCchhhCCCCCCHHHHHHHHHHHHhhC
Confidence 78999999886 7777764 233333 4789999999999999999988 999999999999999999999999
Q ss_pred CcchhHHHHhHHHHH-HHHHhcCCHHHHHHHhHHHhcccceeEEEeecCCCCCCCCCCceEE-----EEeCC---EEEEe
Q 021675 130 ASCSTFILVHSSLAM-LTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTA-----TKVEG---GWILE 200 (309)
Q Consensus 130 ~s~~~~~~~~~~~~~-~~l~~~Gt~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a-----~~~~~---~~~ln 200 (309)
++++..+.+|+.++. .+|..+||++||++|||++++|+.++||++|||++|||+.++.|++ +++++ +|+||
T Consensus 154 ~s~a~~~~v~~slg~~~lL~~~GteeQK~~yLp~La~Ge~i~afAlTEP~aGSDaa~i~Tta~~~~a~~dGd~~~g~vLN 233 (777)
T PRK09463 154 GTLAVTVMVPNSLGPGELLLHYGTDEQKDHYLPRLARGEEIPCFALTSPEAGSDAGSIPDTGVVCKGEWQGEEVLGMRLT 233 (777)
T ss_pred cchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCcCCCcccccccceeeeeeecCCcccceEEE
Confidence 888877778876664 4788999999999999999999999999999999999999988654 34555 69999
Q ss_pred eeeeeecCCCCCCEEEEEEEe-CC--------CCCeEEEEEeCCCCCeeEecccCcccccccCceeEEEceeeeCCCCCc
Q 021675 201 GQKRWIGNSTFADVLVIFARN-TT--------TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271 (309)
Q Consensus 201 G~K~~i~~a~~a~~~~V~a~~-~~--------~~~~~~flV~~~~pGv~v~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l 271 (309)
|+|+||||++.||+++|++++ ++ +.++.+||||.+.|||++.+.+.++|++ ..++.++|+||+||.+++|
T Consensus 234 G~K~~IT~a~~Ad~l~V~ar~~dp~~~~g~~~~~Git~fLVp~d~pGV~ig~~~~~lG~r-~~~g~v~fddV~VP~d~lL 312 (777)
T PRK09463 234 WNKRYITLAPIATVLGLAFKLYDPDGLLGDKEDLGITCALIPTDTPGVEIGRRHFPLNVP-FQNGPTRGKDVFIPLDYII 312 (777)
T ss_pred EEEEeeCCCCccCEEEEEEEecCcccccCCCCCCceEEEEEECCCCCeEecccccccCcc-cccceEEeeeeecCHHHhc
Confidence 999999999999999999985 21 2578999999999999999999999998 5699999999999999999
Q ss_pred CC----CCCHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHhcC
Q 021675 272 PG----VNSFQDTSKVLAVSR-VMVAWQPIGISMGVYDMCHRY 309 (309)
Q Consensus 272 ~~----~~~~~~~~~~l~~~r-~~~aa~~~G~a~~al~~a~~Y 309 (309)
|+ ++|++..+..++.+| +.+++.++|+++.|++.+++|
T Consensus 313 G~~~~~G~G~~~l~~~L~~gR~i~laA~avG~ar~al~~Av~Y 355 (777)
T PRK09463 313 GGPKMAGQGWRMLMECLSVGRGISLPSNSTGGAKLAALATGAY 355 (777)
T ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 86 468889999999999 899999999999999999987
No 22
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=7.9e-42 Score=335.29 Aligned_cols=252 Identities=27% Similarity=0.318 Sum_probs=215.7
Q ss_pred CCHHHHHHH-HHHHHHHHhhcCccHHHHHHhCCCCHHHHHHHHhCCcccccc-ccCCCCCCCHHHHHHHHHHHHccCCcc
Q 021675 55 LTSEEQAVR-MKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASC 132 (309)
Q Consensus 55 l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~s~ 132 (309)
++++++.+. +.++++++. + ......++.+++|.++|++|+++||+++.+ ++|||.|++..+...+++++++.+.++
T Consensus 78 l~~eeq~fl~~~v~~l~~~-~-~e~~~~~~~~~~P~evw~~Lae~Gl~gl~IPeeyGGlG~s~~~~a~V~eela~~~~s~ 155 (774)
T PRK13026 78 LTAEEQAFIDNEVETLLTM-L-DDWDIVQNRKDLPPEVWDYLKKEGFFALIIPKEYGGKGFSAYANSTIVSKIATRSVSA 155 (774)
T ss_pred cCHHHHHHHHHHHHHHHhh-h-hhhhhhhhhcCCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhccch
Confidence 565555444 466777653 1 112223457899999999999999999988 999999999999999999999988888
Q ss_pred hhHHHHhHHHH-HHHHHhcCCHHHHHHHhHHHhcccceeEEEeecCCCCCCCCCCceEEE-----EeCC---EEEEeeee
Q 021675 133 STFILVHSSLA-MLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTAT-----KVEG---GWILEGQK 203 (309)
Q Consensus 133 ~~~~~~~~~~~-~~~l~~~Gt~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~-----~~~~---~~~lnG~K 203 (309)
+..+.+|++++ ..+|..+||++||++|||++++|+.++||++|||++|||+.++.|+++ ++++ ||+|||+|
T Consensus 156 a~~~~v~~slg~~~lL~~~GTeEQK~~yLP~LAsGe~i~afAlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvLNG~K 235 (774)
T PRK13026 156 AVTVMVPNSLGPGELLTHYGTQEQKDYWLPRLADGTEIPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLTWDK 235 (774)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHhhhHHHhCCCeEEEEEecCCCCCCchhcccceeeeeeeeecCCccccEEEEEEE
Confidence 77777777665 457889999999999999999999999999999999999999986654 4666 69999999
Q ss_pred eeecCCCCCCEEEEEEEe-CC--------CCCeEEEEEeCCCCCeeEecccCcccccccCceeEEEceeeeCCCCCcCC-
Q 021675 204 RWIGNSTFADVLVIFARN-TT--------TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG- 273 (309)
Q Consensus 204 ~~i~~a~~a~~~~V~a~~-~~--------~~~~~~flV~~~~pGv~v~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~- 273 (309)
+||||++.||+++|.++. ++ ..++.+|+||.+.|||++.+.++++|++.. ++.++|+||+||.+++|++
T Consensus 236 ~~IT~A~~Ad~~~v~ar~~dpd~~~g~~~~~GiT~fLVp~d~pGV~ig~~~~~lG~~~~-~g~v~fdDV~VP~d~lLG~~ 314 (774)
T PRK13026 236 RYITLAPVATVLGLAFKLRDPDGLLGDKKELGITCALIPTDHPGVEIGRRHNPLGMAFM-NGTTRGKDVFIPLDWIIGGP 314 (774)
T ss_pred EeecCccccCEEEEEEEeeCccccccCCCCCceEEEEEECCCCCeEeeccccccccCcc-cceEEEeeeEccHHHhcCCc
Confidence 999999999999887764 21 247899999999999999999999999974 6899999999999999986
Q ss_pred ---CCCHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHhcC
Q 021675 274 ---VNSFQDTSKVLAVSR-VMVAWQPIGISMGVYDMCHRY 309 (309)
Q Consensus 274 ---~~~~~~~~~~l~~~r-~~~aa~~~G~a~~al~~a~~Y 309 (309)
++|++..+..++.+| +.+++.++|+++.|++.+++|
T Consensus 315 ~~~G~G~~~l~~~L~~gR~i~laA~a~G~A~~al~~Av~Y 354 (774)
T PRK13026 315 DYAGRGWRMLVECLSAGRGISLPALGTASGHMATRTTGAY 354 (774)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888999999999 899999999999999999887
No 23
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=1.8e-41 Score=316.97 Aligned_cols=251 Identities=25% Similarity=0.316 Sum_probs=219.0
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcCccHHHHH-HhCCCCH----HHHHHHHhCCcccccc-ccCCCCCCCHHHHHHHHHHHH
Q 021675 53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYW-EKAEFPF----HVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIA 126 (309)
Q Consensus 53 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la 126 (309)
+.++++|.++++.+++|+++++.|...+.+ +...+|. ++|+++.++||+++.+ ++|||.|+++.+.+.++|+++
T Consensus 2 ~~lteeq~~l~~~~r~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~e~G~~gl~vPe~~GG~G~~~~~~~~v~eelg 81 (395)
T TIGR03204 2 LAFSKEEQAFRDEVRSFFKDNVPADTRQKLVEGRHLTKDEMVTWWRILNKKGWGVSHWPKQYGGTGWTSVQHYIFNEELQ 81 (395)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCChhhhhhhhccCCCChHHHHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999888765533 3334563 8999999999999988 999999999999999999999
Q ss_pred ccCCcchhHHHHhHHHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEeecCCCCCCCCCCceEEEEeCCEEEEeeeeeee
Q 021675 127 RVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWI 206 (309)
Q Consensus 127 ~~d~s~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~lnG~K~~i 206 (309)
+.+.+.+..+.++ ++...|..+|+++||++|||++.+|+.++++++|||++|||+..+.|++++++++|+|||+|.||
T Consensus 82 ~~~~~~~~~~~~~--~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~g~~~~LnG~K~~v 159 (395)
T TIGR03204 82 SAPAPQPLAFGVS--MVGPVIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTWT 159 (395)
T ss_pred hcCCCccchhHhH--hhHHHHHHhCCHHHHHHHHHHHhCCchheEeEecCCCCCCChhhceEEEEEcCCEEEEeeEEEee
Confidence 9998776433322 33446788899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCEEEEEEEeCC----CCCeEEEEEeCCCCCeeEecccCcccccccCceeEEEceeeeCCCCCcCCC-CCHHHHH
Q 021675 207 GNSTFADVLVIFARNTT----TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTS 281 (309)
Q Consensus 207 ~~a~~a~~~~V~a~~~~----~~~~~~flV~~~~pGv~v~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~ 281 (309)
+|+..||+++|++++++ ..++.+|+||.+.||+++.+...+.| +.++++|.|+||+||++++|+.. +++....
T Consensus 160 t~a~~Ad~~lv~a~~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~~--~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~ 237 (395)
T TIGR03204 160 TLAQHADWIFCLCRTDPTAKKQMGISFILVDMKSKGITVRPIQTIDG--GVEVNEVFFDDVEVPYENLVGEENKGWDYAK 237 (395)
T ss_pred cCCccCCeEEEEEEeCCCCCCCCCeEEEEEeCCCCCeEecChhhccC--CCceeEEEEcceEEcHHHcCCCCCchHHHHH
Confidence 99999999999999743 24689999999999999987666665 66789999999999999999874 6888888
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 021675 282 KVLAVSRVMVAWQPIGISMGVYDMCHRY 309 (309)
Q Consensus 282 ~~l~~~r~~~aa~~~G~a~~al~~a~~Y 309 (309)
..++..|+++++ +|+++++++.+++|
T Consensus 238 ~~l~~~r~g~aa--~g~a~~~l~~a~~y 263 (395)
T TIGR03204 238 FLLGNERTGIAR--VGVSKERIRRIKDL 263 (395)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 899999999876 89999999999887
No 24
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=2.9e-41 Score=315.86 Aligned_cols=251 Identities=21% Similarity=0.271 Sum_probs=215.4
Q ss_pred HHHHHHHHHHHHHhhcCccHHHHHHh-----------CCCCHHHHHHHHhCCcccccc-ccCCCCCCCHHHHHHHHHHHH
Q 021675 59 EQAVRMKVRECMEKEIAPIMAEYWEK-----------AEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIA 126 (309)
Q Consensus 59 ~~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la 126 (309)
.+++++.+++|+++++.|...++++. .+++.++|+.++++||+++.+ ++|||.|+++.+.+.++|+++
T Consensus 3 ~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~P~~~GG~g~~~~~~~~v~e~l~ 82 (394)
T cd01155 3 AQELRARVKAFMEEHVYPAEQEFLEYYAEGGDRWWTPPPIIEKLKAKAKAEGLWNLFLPEVSGLSGLTNLEYAYLAEETG 82 (394)
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHhhcccccccccCCchhHHHHHHHHHhCCCCCCCCChhhCCCCcCHHHHHHHHHHHh
Confidence 57889999999999999887766642 123358888999999999988 999999999999999999999
Q ss_pred ccCCc-chhHHHHhHHHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEeecCC-CCCCCCCCceEEEEeCCEEEEeeeee
Q 021675 127 RVDAS-CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPA-YGSDASALNTTATKVEGGWILEGQKR 204 (309)
Q Consensus 127 ~~d~s-~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~~~~g~~~~~~a~tE~~-~Gs~~~~~~t~a~~~~~~~~lnG~K~ 204 (309)
+.+.+ .+.....+...+...+..+|+++||++||+++.+|+.++++++|||+ .|||...+.|++++++|||+|||+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE~~~~gsd~~~~~t~a~~~~~g~~LnG~k~ 162 (394)
T cd01155 83 RSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGRKW 162 (394)
T ss_pred hhcccchheeecccccccHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCCCchhhCEEEEEEECCEEEEEEEEE
Confidence 98632 22211122222345788999999999999999999999999999997 57999999999999999999999999
Q ss_pred eecCCCC--CCEEEEEEEeCCC-----CCeEEEEEeCCCCCeeEecccCcccccc--cCceeEEEceeeeCCCCCcCCC-
Q 021675 205 WIGNSTF--ADVLVIFARNTTT-----NQINGYLVKKDAPGLTVTKIENKIGLRI--VQNGDILLKKVFVPDEDRLPGV- 274 (309)
Q Consensus 205 ~i~~a~~--a~~~~V~a~~~~~-----~~~~~flV~~~~pGv~v~~~~~~~Gl~~--~~~~~l~f~~v~Vp~~~~l~~~- 274 (309)
||+|+.. +|+++|+++++++ .++.+|+||.+.||+++.+.|+++|+++ +.+++|.|+||+||++++|+..
T Consensus 163 ~vs~~~~~~a~~~~v~a~~~~~~~~~~~~~~~flVp~~~~Gv~i~~~~~~~G~r~~~t~s~~v~f~dv~Vp~~~~lg~~~ 242 (394)
T cd01155 163 WSSGAGDPRCKIAIVMGRTDPDGAPRHRQQSMILVPMDTPGVTIIRPLSVFGYDDAPHGHAEITFDNVRVPASNLILGEG 242 (394)
T ss_pred EEcCCCCCCCCEEEEEEEeCCCcCCCCCceEEEEEeCCCCCeEeeccccccCCCCCCCCeeEEEEccEEecHHHcCCCCC
Confidence 9999954 7899999987432 3678999999999999999999999997 5688999999999999999865
Q ss_pred CCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 021675 275 NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRY 309 (309)
Q Consensus 275 ~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~Y 309 (309)
+++......+...|+..++.++|+++++++.+++|
T Consensus 243 ~g~~~~~~~~~~~r~~~~a~~lG~a~~al~~~~~~ 277 (394)
T cd01155 243 RGFEIAQGRLGPGRIHHCMRLIGAAERALELMCQR 277 (394)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888889999999999999999999999876
No 25
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=1e-40 Score=312.14 Aligned_cols=256 Identities=37% Similarity=0.535 Sum_probs=228.5
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCccHHHHHH---hCCCCHHHHHHHHhCCcccccc-ccCCCCCCCHHHHHHHHHHHHccC
Q 021675 54 LLTSEEQAVRMKVRECMEKEIAPIMAEYWE---KAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVD 129 (309)
Q Consensus 54 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d 129 (309)
.+++++.++++.+++|+++.+.|...+.+. ...+|.+.++++.+.|++++.+ ++|||.+.+..+...+.+++++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~~p~e~GG~~~~~~~~~~~~e~l~~~~ 83 (393)
T COG1960 4 DLSEEQEALRAEVREFAEEELAPEAAEIDRRIEDERFPRELLRALAEAGLLGLTIPEEYGGLGLSPLEQAAVLEELARAD 83 (393)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCcchhhhhhhcccccCHHHHHHHHHhCCcccCCCChhhCCCCcchhHHHHHHHHHHhhC
Confidence 345788999999999999998877777775 5889999999999999999988 999999999999999999999999
Q ss_pred CcchhHHHHhHHH---HHHHHHhcCCHHHHHHHhHHHhcccceeEEEeecCCCCCCCCCCc-eEEEEeCCEEEEeeeeee
Q 021675 130 ASCSTFILVHSSL---AMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALN-TTATKVEGGWILEGQKRW 205 (309)
Q Consensus 130 ~s~~~~~~~~~~~---~~~~l~~~Gt~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~-t~a~~~~~~~~lnG~K~~ 205 (309)
++.+..+.++... ....+..+|+++||++|||++.+|+.++|+++|||++|||+.++. |++++++++|+|||+|+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~~g~~~lnG~K~~ 163 (393)
T COG1960 84 AGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQKIW 163 (393)
T ss_pred cchhhhHHHhccccccchHHHHHcCCHHHHHHhchhhhCCchhheeeccCCCCCcchhcCceeEEEecCCCEEEEeEEEE
Confidence 8776655555422 223677799999999999999999999999999999999999987 677776666999999999
Q ss_pred ecCCCCCCEEEEEEEeCCC----CCeEEEEEeCC-CCCeeEecccCcccccccCceeEEEceeeeCCCCCcCCC-CCHHH
Q 021675 206 IGNSTFADVLVIFARNTTT----NQINGYLVKKD-APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQD 279 (309)
Q Consensus 206 i~~a~~a~~~~V~a~~~~~----~~~~~flV~~~-~pGv~v~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~ 279 (309)
|||+..||+++|+|+++++ +++++|+||.+ .||+++.+.+++.|+++++++.+.|+||+||.+++|+.. .++..
T Consensus 164 is~~~~ad~~~v~Ar~~~~~~~~~gis~flV~~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~lig~~~~g~~~ 243 (393)
T COG1960 164 ISNAPVADWLLVLARTDPAPGKHKGISLFLVPKDLTPGVSVGPILKKMGLRGSATGEVFFDDVRVPAENLLGEEGDGFKI 243 (393)
T ss_pred EcCCCCCCEEEEEEEcCCcccccCceEEEEEeCCCCCCeeeccccCcCCcCCCCeeEEEECCeeccHHHcCCcCCchHHH
Confidence 9999999999999998643 57899999999 599999998864499999999999999999999999864 78999
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 021675 280 TSKVLAVSRVMVAWQPIGISMGVYDMCHRY 309 (309)
Q Consensus 280 ~~~~l~~~r~~~aa~~~G~a~~al~~a~~Y 309 (309)
....++..|+.+++.++|++++|++.+++|
T Consensus 244 ~~~~l~~~r~~~aa~~~G~a~~al~~~~~y 273 (393)
T COG1960 244 AMETLNVERLGIAAQALGIAEAALEEAVAY 273 (393)
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987
No 26
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=2.5e-40 Score=310.61 Aligned_cols=242 Identities=24% Similarity=0.306 Sum_probs=216.2
Q ss_pred HHHHHHHHHhhcCccHHHHHHhCC--------CC---HHHHHHHHhCCcccccc-ccCCCCCCCHHHHHHHHHHHHccCC
Q 021675 63 RMKVRECMEKEIAPIMAEYWEKAE--------FP---FHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDA 130 (309)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~---~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~ 130 (309)
++.+++|+.+++.|.+.++|++.. || .++|++|.+.||+++.+ ++|||.|.++.+...+.++++++|.
T Consensus 2 ~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~p~~~~e~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~~ 81 (407)
T cd01153 2 LEEVARLAENVLAPLNADGDREGPVFDDGRVVVPPPFKEALDAFAEAGWMALGVPEEYGGQGLPITVYSALAEIFSRGDA 81 (407)
T ss_pred hHHHHHHHHHHhhhhHHhHhccCCcccCCceEcChhHHHHHHHHHHCCCCCCCCccccCCCCCCHHHHHHHHHHHHhhhH
Confidence 678999999999998887776554 88 67899999999999988 9999999999999999999999999
Q ss_pred cchhHHHHhHHHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEeecCCCCCCCCCCceEEEEe-CCEEEEeeeeeeecCC
Q 021675 131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNS 209 (309)
Q Consensus 131 s~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~-~~~~~lnG~K~~i~~a 209 (309)
++++.+.+|. +...+..+|+++||++|++++.+|+.++|+++|||++|||+..+.|+++++ +|+|+|||+|+||+|+
T Consensus 82 s~~~~~~~~~--~~~~l~~~g~~~~~~~~l~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~ggy~l~G~K~~is~~ 159 (407)
T cd01153 82 PLMYASGTQG--AAATLLAHGTEAQREKWIPRLAEGEWTGTMCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFISAG 159 (407)
T ss_pred HHHHHHHHhH--HHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCCcccceEEEEECCCCcEEEeeEEEEEeCC
Confidence 9877666553 345677889999999999999999999999999999999999999999998 5689999999999999
Q ss_pred CCC----CEEEEEEEeCCC----CCeEEEEEeCCC-----CCeeEecccCcccccccCceeEEEceeeeCCCCCcCCC-C
Q 021675 210 TFA----DVLVIFARNTTT----NQINGYLVKKDA-----PGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-N 275 (309)
Q Consensus 210 ~~a----~~~~V~a~~~~~----~~~~~flV~~~~-----pGv~v~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~ 275 (309)
..| ++++|+++++++ .++.+|+||.+. |||++.+.|+++|+++++++++.|+||+|| +|+.. .
T Consensus 160 ~~a~~~~~~~~v~a~~~~~~~~~~~~~~flVp~~~~~~~~~gv~i~~~~~~~G~r~t~s~~v~f~~v~Vp---~lg~~~~ 236 (407)
T cd01153 160 EHDMSENIVHLVLARSEGAPPGVKGLSLFLVPKFLDDGERNGVTVARIEEKMGLHGSPTCELVFDNAKGE---LIGEEGM 236 (407)
T ss_pred CcccccccEEEEEEeCCCCCCCCCceEEEEEeccCcCCCCCCeEeccchhccCCCCCCeEEEEEcCEEEe---eeCCCCc
Confidence 876 578899987431 367899999987 899999999999999999999999999999 67664 6
Q ss_pred CHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 021675 276 SFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRY 309 (309)
Q Consensus 276 ~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~Y 309 (309)
++......+...|+.++++++|+++++++.+++|
T Consensus 237 g~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~ 270 (407)
T cd01153 237 GLAQMFAMMNGARLGVGTQGTGLAEAAYLNALAY 270 (407)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888999999999999999999999999876
No 27
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=100.00 E-value=1.1e-39 Score=303.60 Aligned_cols=238 Identities=21% Similarity=0.290 Sum_probs=208.2
Q ss_pred HHHHHHhhcCccHHHHHHhCCCCHHHHHHHHhCCcccccc-ccCCCCCCCHHHHHHHHHHHHccCCcchhHHHHhHHHHH
Q 021675 66 VRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAM 144 (309)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~s~~~~~~~~~~~~~ 144 (309)
+++++.. +.+.+.++++.+.+|.+.|+.|++.||+++.+ ++|||.|+++.+...+++++++.|+++++.+.+|... .
T Consensus 3 ~~~~~~~-~~~~a~~~d~~~~~p~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~~~-~ 80 (377)
T cd01163 3 ARPLAAR-IAEGAAERDRQRGLPYEEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHFGF-V 80 (377)
T ss_pred HHHHHHH-HhhhhhhhhhcCCCCHHHHHHHHHCCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH-H
Confidence 4555543 66777788888999999999999999999988 9999999999999999999999999998877777643 4
Q ss_pred HHHHhcCCHHHHHHHhHHHhcccceeEEEeecCCCCCCCCCCceEEEEeCCEEEEeeeeeeecCCCCCCEEEEEEEeCCC
Q 021675 145 LTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTT 224 (309)
Q Consensus 145 ~~l~~~Gt~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~lnG~K~~i~~a~~a~~~~V~a~~~~~ 224 (309)
..+..+|+++||++|++++.+|++++ .++|||++|+ ...+.+++++++|+|+|||+|.||+|+..||+++|++++++
T Consensus 81 ~~l~~~g~~~~~~~~l~~~~~g~~~~-~a~tE~~~~~-~~~~~~~~~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~~- 157 (377)
T cd01163 81 EALLLAGPEQFRKRWFGRVLNGWIFG-NAVSERGSVR-PGTFLTATVRDGGGYVLNGKKFYSTGALFSDWVTVSALDEE- 157 (377)
T ss_pred HHHHhcCcHHHHHHHHHHHhCCCeEE-EeecCCCCCC-CCCceEEEEecCCEEEEeceEEeecCCccceEEEEEEEcCC-
Confidence 67888999999999999999999665 5999999876 66677778888899999999999999999999999999753
Q ss_pred CCeEEEEEeCCCCCeeEecccCcccccccCceeEEEceeeeCCCCCcCCC-CCHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 021675 225 NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGISMGVY 303 (309)
Q Consensus 225 ~~~~~flV~~~~pGv~v~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~~l~~~r~~~aa~~~G~a~~al 303 (309)
+++.+|+||.+.||+++.+.|+++|+++++++.|+|+||+||.+++|+.. .++. ....+...|+.++++++|++++++
T Consensus 158 ~~~~~~lV~~~~~Gv~i~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~lg~~~~g~~-~~~~~~~~~l~~aa~~lG~a~~al 236 (377)
T cd01163 158 GKLVFAAVPTDRPGITVVDDWDGFGQRLTASGTVTFDNVRVEPDEVLPRPNAPDR-GTLLTAIYQLVLAAVLAGIARAAL 236 (377)
T ss_pred CcEEEEEEeCCCCceeecCCcccccCccCCcceEEEeeEEECHHHccCCCccccc-cccccHHHHHHHHHHHHHHHHHHH
Confidence 55788999999999999999999999999999999999999999999875 3432 233456789999999999999999
Q ss_pred HHHhcC
Q 021675 304 DMCHRY 309 (309)
Q Consensus 304 ~~a~~Y 309 (309)
+.+++|
T Consensus 237 ~~~~~~ 242 (377)
T cd01163 237 DDAVAY 242 (377)
T ss_pred HHHHHH
Confidence 999876
No 28
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=8e-40 Score=304.75 Aligned_cols=249 Identities=28% Similarity=0.354 Sum_probs=219.2
Q ss_pred HHHHHHHHHHHHHHHhhcCccHHHH-----HHhCCCCHHHHHHHHhCCcccccc-ccCCCCCCCHHHHHHHHHHHHccCC
Q 021675 57 SEEQAVRMKVRECMEKEIAPIMAEY-----WEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDA 130 (309)
Q Consensus 57 ~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~ 130 (309)
++|+++++.+++|+++++.|...+. ++.+.+|.+++++|+++||+++.+ ++|||.|.++.+.+.+++++++.|.
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~l~~~~~ 80 (380)
T cd01152 1 PSEEAFRAEVRAWLAAHLPPELREESALGYREGREDRRRWQRALAAAGWAAPGWPKEYGGRGASLMEQLIFREEMAAAGA 80 (380)
T ss_pred CcHHHHHHHHHHHHHhcCCccccccccccccccchHHHHHHHHHHhCCCCccCCChhhCCCCCCHHHHHHHHHHHHhcCC
Confidence 3577999999999999998877543 335678999999999999999988 9999999999999999999999998
Q ss_pred cchhHHHHhHHHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEeecCCCCCCCCCCceEEEEeCCEEEEeeeeeeecCCC
Q 021675 131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST 210 (309)
Q Consensus 131 s~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~lnG~K~~i~~a~ 210 (309)
++++.+..+. ++...+..+|+++|+++||+++.+|+.++++++|||++|||...+.|++++++++|+|||+|+||+++.
T Consensus 81 ~~~~~~~~~~-~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~L~G~K~~it~~~ 159 (380)
T cd01152 81 PVPFNQIGID-LAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGAH 159 (380)
T ss_pred CcccchhhHH-HHHHHHHHhCCHHHHHHHhHHHhCCchhheeecCCCCCCcchhhCeeeEEEcCCeEEEecEEEEEcCcc
Confidence 8876522222 345578889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCC----CCeEEEEEeCCCCCeeEecccCcccccccCceeEEEceeeeCCCCCcCCC-CCHHHHHHhhh
Q 021675 211 FADVLVIFARNTTT----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLA 285 (309)
Q Consensus 211 ~a~~~~V~a~~~~~----~~~~~flV~~~~pGv~v~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~~l~ 285 (309)
.||+++|+++++++ +++.+|+||++.||+++.+.++++| +.+++.+.|+||+||.+++|+.. +++......+.
T Consensus 160 ~ad~~lv~a~~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~g--~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~ 237 (380)
T cd01152 160 YADWAWLLVRTDPEAPKHRGISILLVDMDSPGVTVRPIRSING--GEFFNEVFLDDVRVPDANRVGEVNDGWKVAMTTLN 237 (380)
T ss_pred ccCEEEEEEEeCCCccCcCCeEEEEEeCCCCceEeeehhhccC--CCCcceEEecCcCcchhcccCCCCchHHHHHHHHH
Confidence 99999999997532 3688999999999999999998888 56789999999999999999875 67888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 021675 286 VSRVMVAWQPIGISMGVYDMCHR 308 (309)
Q Consensus 286 ~~r~~~aa~~~G~a~~al~~a~~ 308 (309)
..|+..++.+.|+++.+++.+.+
T Consensus 238 ~~r~~~~~~~~~~~~~a~~~a~~ 260 (380)
T cd01152 238 FERVSIGGSAATFFELLLARLLL 260 (380)
T ss_pred hcccccchhhhHHHHHHHHHHHH
Confidence 99999988899999988888764
No 29
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=2e-40 Score=305.14 Aligned_cols=264 Identities=27% Similarity=0.389 Sum_probs=235.1
Q ss_pred CCcccCCcCCCHHHHHHHHHHHHHHHhhcC-c-cHHHHHHhCCCCHHHHHHHHhCCcccccc-ccCCCCCCCHHHHHHHH
Q 021675 46 SDYYQFDDLLTSEEQAVRMKVRECMEKEIA-P-IMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAI 122 (309)
Q Consensus 46 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~ 122 (309)
.|...+.+.+++|+.++.+.+-.-+++.+. + +....|+....++..++.|+++|+|++.+ ++|+|.|+.+.++..+.
T Consensus 67 k~v~~yPev~~~e~~~~~~~~~~pl~r~f~e~~d~~k~d~~~~~~~~t~e~l~elG~fgl~v~~e~~G~G~~ntq~arl~ 146 (634)
T KOG0137|consen 67 KDVFPYPEVITSEQKELLEQFVLPLERFFEEVNDSKKNDKLGKIEETTLEALRELGLFGLQVPSEFDGLGFCNTQYARLF 146 (634)
T ss_pred hhhcCCcccCcHHHHHHHHhhhhhHHHhhhccchhhhhhhhcccchhHHHHHHHhCceeeccCcccCccccchHHHHHHh
Confidence 455667777888887665444433333222 1 22345677899999999999999999999 99999999999999999
Q ss_pred HHHHccCCcchhHHHHhHHHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEeecCCCCCCCCCCceEEEEe--CCEEEEe
Q 021675 123 AEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE 200 (309)
Q Consensus 123 e~la~~d~s~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~--~~~~~ln 200 (309)
|.++.+|.++++.++.|..+..-.|..+||++||+||||++++|+.+++|++|||..|||..+..|+|+.. ++.|+||
T Consensus 147 e~~~~~D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~kYL~~LaSg~~~~A~altE~s~Gsdaas~~~~a~~s~dg~~y~LN 226 (634)
T KOG0137|consen 147 EIVSVADLNVGVTLGAHQSIGLKGLLLYGTDEQKQKYLPKLASGKLIAAFALTEPSSGSDAASGRTTATLSPDGKHYVLN 226 (634)
T ss_pred hccccccccceeeeccchhhheeeeeecCCHHHHHHHHHhhhcCCccceEEEecCCCCcccccceeeeeecCCCCeEEEc
Confidence 99999999999988888888888999999999999999999999999999999999999999999999984 4559999
Q ss_pred eeeeeecCCCCCCEEEEEEEeCC-------CCCeEEEEEeCCCCCeeEecccCcccccccCceeEEEceeeeCCCCCcCC
Q 021675 201 GQKRWIGNSTFADVLVIFARNTT-------TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG 273 (309)
Q Consensus 201 G~K~~i~~a~~a~~~~V~a~~~~-------~~~~~~flV~~~~pGv~v~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~ 273 (309)
|.|.||+|+..||+++|||+++- .+++.+|||+++..|++-++...+||.+++..+++.|+++.||.+|+||.
T Consensus 227 G~Kiwisn~g~Adif~VfAqt~~~~~~g~~k~k~T~Flver~~~Gvt~G~~e~k~GiKgsnt~~v~f~~~ki~~envlG~ 306 (634)
T KOG0137|consen 227 GSKIWISNGGLADIFTVFAQTEVDPADGEVKRKITAFLVERDFGGVTNGPPEKKMGIKGSNTAEVHFEGVKIPIENVLGK 306 (634)
T ss_pred CeeEEEecCccceeeeeeeccccCCCCccccCceEEEEEeccccCccCCCchhhhcccccceeeeeeccccccHHHhcCC
Confidence 99999999999999999999852 15789999999999999999999999999999999999999999999998
Q ss_pred C-CCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 021675 274 V-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRY 309 (309)
Q Consensus 274 ~-~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~Y 309 (309)
. +|+++.+..++.+|+..++..+|.|+++++++.+|
T Consensus 307 ~G~G~kva~nilnsgR~~~aaa~~G~mkr~I~~~~d~ 343 (634)
T KOG0137|consen 307 PGDGFKVAMNILNSGRFGMAAALLGLMKRIIEEAADY 343 (634)
T ss_pred CCcchHHHHHHHccCCcchhHHHHHHHHHHHHHHHHH
Confidence 6 89999999999999999999999999999999887
No 30
>PLN02876 acyl-CoA dehydrogenase
Probab=100.00 E-value=5.6e-39 Score=324.29 Aligned_cols=257 Identities=19% Similarity=0.241 Sum_probs=220.2
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcCccHHHHHHhC-------CCC-HHHHHHHH-hCCcccccc-cc---------------
Q 021675 53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKA-------EFP-FHVIPKLG-ALRVAGGTI-KG--------------- 107 (309)
Q Consensus 53 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~l~-~~Gl~~~~~-~~--------------- 107 (309)
+.+++++.++++++++|+++++.|...++++.. .+| .+.|+++. ++||+++.+ ++
T Consensus 400 ~~~s~~~~~l~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~p~~~~~~~~~~~~~~~~~ 479 (822)
T PLN02876 400 FVPSEKVLELRKKLIKFMEDHIYPMENEFYKLAQSSSRWTVHPEEERLKELAKKEGLWNLWIPLDSAARARKLLFEDNKH 479 (822)
T ss_pred cCCCHHHHHHHHHHHHHHHHHccCccHHHHhhcccccccccCcchHHHHHHHHHcCcccCCCCchhhhhhhhcccccccc
Confidence 567899999999999999999888776655321 377 58888886 999999988 63
Q ss_pred ---------CCCCCCCHHHHHHHHHHHHccCCcchhH-HHHhHHHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEeecC
Q 021675 108 ---------YGCPGHSVTGAAIAIAEIARVDASCSTF-ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEP 177 (309)
Q Consensus 108 ---------~GG~g~~~~~~~~v~e~la~~d~s~~~~-~~~~~~~~~~~l~~~Gt~~qk~~~l~~~~~g~~~~~~a~tE~ 177 (309)
|||.|+++.+.+.++|++++++.+...+ ...+...++..|..+|+++||++||+++++|+.++|+++|||
T Consensus 480 ~~~~~~~~~~GG~G~~~~~~~~~~Eelg~~~~~~~~~~~~~~~~~~~~~l~~~gt~eqk~~~L~~l~~G~~~~~~a~tEp 559 (822)
T PLN02876 480 MVSGDSADQLLGAGLSNLEYGYLCEIMGRSVWAPQVFNCGAPDTGNMEVLLRYGNKEQQLEWLIPLLEGKIRSGFAMTEP 559 (822)
T ss_pred cccccccccCCCCCCCHHHHHHHHHHHhccchHHHHhcccCcccccHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCC
Confidence 9999999999999999999986432211 112222334578889999999999999999999999999999
Q ss_pred C-CCCCCCCCceEEEEeCCEEEEeeeeeeecCC--CCCCEEEEEEEeCCC----CCeEEEEEeCCCCCeeEecccCcccc
Q 021675 178 A-YGSDASALNTTATKVEGGWILEGQKRWIGNS--TFADVLVIFARNTTT----NQINGYLVKKDAPGLTVTKIENKIGL 250 (309)
Q Consensus 178 ~-~Gs~~~~~~t~a~~~~~~~~lnG~K~~i~~a--~~a~~~~V~a~~~~~----~~~~~flV~~~~pGv~v~~~~~~~Gl 250 (309)
+ .|||..++.|++++++|+|+|||+|+||+|+ +.||+++|+++++++ +++.+|+||.+.|||++.+.|+++|+
T Consensus 560 ~~~gsd~~~~~t~a~~~g~g~vLnG~K~~vtga~~~~ad~~lv~ar~~~~~~~~~~~s~flV~~~~pGv~i~~~~~~~G~ 639 (822)
T PLN02876 560 QVASSDATNIECSIRRQGDSYVINGTKWWTSGAMDPRCRVLIVMGKTDFNAPKHKQQSMILVDIQTPGVQIKRPLLVFGF 639 (822)
T ss_pred CccCcccccceEEEEEcCCEEEEEeEEEEecCCCCCCCCEEEEEEecCCCCCCCCcceEEEEeCCCCCceeecccceecc
Confidence 7 6899999999999999999999999999999 468999999997432 45789999999999999999999999
Q ss_pred ccc--CceeEEEceeeeCCCCCcCCC-CCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 021675 251 RIV--QNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRY 309 (309)
Q Consensus 251 ~~~--~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~Y 309 (309)
+++ .+++|+|+||+||++++|+.. +++......++.+|+..|+.++|++++|++.+++|
T Consensus 640 r~~~~~~~~v~fd~V~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~vG~a~~ale~a~~y 701 (822)
T PLN02876 640 DDAPHGHAEISFENVRVPAKNILLGEGRGFEIAQGRLGPGRLHHCMRLIGAAERGMQLMVQR 701 (822)
T ss_pred CCCCCCeeEEEEcceeechhheecCCCchHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 984 578999999999999999764 68888888899999999999999999999999876
No 31
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=2.7e-38 Score=307.74 Aligned_cols=249 Identities=18% Similarity=0.213 Sum_probs=213.3
Q ss_pred HHHHHHHHHHHHHHHhhcCccHHHHHHhCCC---------C---HHHHHHHHhCCcccccc-ccCCCCCCCHHHHHHHHH
Q 021675 57 SEEQAVRMKVRECMEKEIAPIMAEYWEKAEF---------P---FHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIA 123 (309)
Q Consensus 57 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~---~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e 123 (309)
+.-.++++.+++|+++++.|...+.|+++.+ | .+.|+++.+.||+++.+ ++|||.|++......+.|
T Consensus 58 ~~~~~il~~a~~fa~~~~~p~~~~~D~~~~~~~~~g~v~~p~g~~e~~~~l~e~G~~~l~~Pee~GG~Gl~~~~~~~~~E 137 (622)
T PTZ00456 58 ELMDSLLEEASKLATQTLLPLYESSDSEGCVLLKDGNVTTPKGFKEAYQALKAGGWTGISEPEEYGGQALPLSVGFITRE 137 (622)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhHhhccCccccCCcccCChhHHHHHHHHHHcCCCCCCCCcccCCCCcCHHHHHHHHH
Confidence 4457889999999999999988877765433 5 58999999999999988 999999999875555555
Q ss_pred HHHccCCcchhHHHHhHHHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEeecCCCCCCCCCCceEEEEeCC-EEEEeee
Q 021675 124 EIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEG-GWILEGQ 202 (309)
Q Consensus 124 ~la~~d~s~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~-~~~lnG~ 202 (309)
.+++.++++++.+..+. .+..+|..+|+++||++|||++.+|++++++++|||++|||+..+.|+|++++| +|+|||+
T Consensus 138 ~~~~a~~~~~~~~~l~~-ga~~~L~~~Gs~eqk~~~Lp~l~sGe~~~t~alTEp~aGSD~~~l~T~A~~~gdG~y~L~G~ 216 (622)
T PTZ00456 138 LMATANWGFSMYPGLSI-GAANTLMAWGSEEQKEQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYKITGT 216 (622)
T ss_pred HHHHhchHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhcCChhhhhhccCCccCCCcccCeeEEEECCCCcEEEeeE
Confidence 56777777654444332 345678999999999999999999999999999999999999999999999887 4999999
Q ss_pred eeeecCCCCC----CEEEEEEEeCC----CCCeEEEEEeCCC----------CCeeEecccCcccccccCceeEEEceee
Q 021675 203 KRWIGNSTFA----DVLVIFARNTT----TNQINGYLVKKDA----------PGLTVTKIENKIGLRIVQNGDILLKKVF 264 (309)
Q Consensus 203 K~~i~~a~~a----~~~~V~a~~~~----~~~~~~flV~~~~----------pGv~v~~~~~~~Gl~~~~~~~l~f~~v~ 264 (309)
|.||+++..+ ++++|+||+++ .+++++|+||++. +|+++.++++|+|+++++++.+.|+|+
T Consensus 217 K~fIt~g~~~~~~n~~~lVlAr~~~~~~g~~GiSlFlVp~~~~~~~G~~~~~~gv~~~~~~~kmG~~gs~t~~l~fd~~- 295 (622)
T PTZ00456 217 KIFISAGDHDLTENIVHIVLARLPNSLPTTKGLSLFLVPRHVVKPDGSLETAKNVKCIGLEKKMGIKGSSTCQLSFENS- 295 (622)
T ss_pred EEEecCCchhhccCcEEEEEEEecCCCCCCCceEEEEEeCCCCCcCCCccCCCCeeecCcccccCCCCCceEEEEeeCh-
Confidence 9999999863 57899999853 2679999999865 478888889999999999999999994
Q ss_pred eCCCCCcCCC-CCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 021675 265 VPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRY 309 (309)
Q Consensus 265 Vp~~~~l~~~-~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~Y 309 (309)
.+++|+.. +|+......++..|+.++++++|+++++|+.|++|
T Consensus 296 --~~~llG~~~~Gl~~~~~~mn~aRl~vaa~~lG~a~~Al~~Al~Y 339 (622)
T PTZ00456 296 --VGYLIGEPNAGMKQMFTFMNTARVGTALEGVCHAELAFQNALRY 339 (622)
T ss_pred --hHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899875 68888899999999999999999999999999987
No 32
>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=9.3e-39 Score=291.75 Aligned_cols=263 Identities=24% Similarity=0.317 Sum_probs=224.0
Q ss_pred CCCCcccCCcCCCHHH--HHHHHHHHHHHHhhc----CccHHH-HHHhCCCCHHHHHHHHhCCccccccccCCCCCCCHH
Q 021675 44 CASDYYQFDDLLTSEE--QAVRMKVRECMEKEI----APIMAE-YWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVT 116 (309)
Q Consensus 44 ~~~~~~~~~~~l~~~~--~~l~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~l~~~Gl~~~~~~~~GG~g~~~~ 116 (309)
..+|...+...++.|+ ..++..+.++++... .|.... .++.++.-...|..|.++|.+.....+-+- -+..
T Consensus 28 a~fdwK~~rl~~ege~~~lr~k~~vf~~~e~~p~~f~~p~~~l~me~qRel~~~r~~~l~~~gv~~~~~~~~~~--~~~~ 105 (661)
T KOG0135|consen 28 ATFDWKELRLLVEGENDGLRIKSKVFNRLESDPDLFVSPDRNLSMEEQRELCMKRIKRLVELGVFKFWLVEDGP--EAEL 105 (661)
T ss_pred cCCCHHHHHHHhcccccceeeHHHHhhHhhcCCCeecCcccccCHHHHHHHHHHHHHHHHHhccCcceeecCch--HHHH
Confidence 3678888888887774 577888888887754 233332 345677777888899988888765522221 1456
Q ss_pred HHHHHHHHHHccCCcchhHHHHhHHHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEeecCCCCCCCCCCceEEEEe--C
Q 021675 117 GAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--E 194 (309)
Q Consensus 117 ~~~~v~e~la~~d~s~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~--~ 194 (309)
....+.|.++.+|.|++..+++|..++..++..+||+.|++ |+.++.+.++++||||||.+||||+.+++|||++| .
T Consensus 106 k~~al~E~lg~yd~sls~K~~lh~~lfg~AV~~~GT~rH~~-yi~~~~n~ev~gcfamTEl~HGSNt~~I~TtatyDP~t 184 (661)
T KOG0135|consen 106 KKFALTEALGIYDQSLSAKLGLHFLLFGNAVKSMGTKRHHD-YIQKTENYEVKGCFAMTELGHGSNTKGIQTTATYDPTT 184 (661)
T ss_pred HHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHhhccHHHHH-HHhhhhcceeeeeEEEeeecCCccccceeeeeeecCCC
Confidence 77888999999999999999999999999999999999998 99999999999999999999999999999999998 6
Q ss_pred CEEEEe-----eeeeeecCCCC-CCEEEEEEEe---CCCCCeEEEEEeCC-------CCCeeEecccCcccccccCceeE
Q 021675 195 GGWILE-----GQKRWIGNSTF-ADVLVIFARN---TTTNQINGYLVKKD-------APGLTVTKIENKIGLRIVQNGDI 258 (309)
Q Consensus 195 ~~~~ln-----G~K~~i~~a~~-a~~~~V~a~~---~~~~~~~~flV~~~-------~pGv~v~~~~~~~Gl~~~~~~~l 258 (309)
++|+|| ..|+||+|++. |++.+|+|++ +.++|+|.|||+++ .|||+|+++.+|.|++|++||.+
T Consensus 185 ~EfVinTP~~~A~K~WiGn~a~~athavvfa~L~~~g~n~G~H~FiiqIRdpkT~~t~PgV~igD~G~K~GlnGVDNG~l 264 (661)
T KOG0135|consen 185 EEFVINTPDFSAIKCWIGNAAKHATHAVVFAQLHVPGQNHGLHGFIIQIRDPKTLQTLPGVRIGDCGHKIGLNGVDNGFL 264 (661)
T ss_pred CeeEecCCcHHHHHHHhccccccceEEEEEEEeeecCccCceeeEEEEeecccccCCCCCceecccccccccccccCceE
Confidence 789999 79999999977 9999999997 33589999999987 67999999999999999999999
Q ss_pred EEceeeeCCCCCcCC-----------------CCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 021675 259 LLKKVFVPDEDRLPG-----------------VNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRY 309 (309)
Q Consensus 259 ~f~~v~Vp~~~~l~~-----------------~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~Y 309 (309)
+|+|||||++|+|.. .+.|......|..+|++++..++|.++-++.+||+|
T Consensus 265 ~F~nvRIPRenLLNr~gDVtpDG~YvSs~k~~~qrfgA~L~~Ls~GRvgIa~~ai~~lkla~tIAIRY 332 (661)
T KOG0135|consen 265 WFDNVRIPRENLLNRFGDVTPDGKYVSSFKDPSQRFGASLGSLSSGRVGIASSAIGALKLALTIAIRY 332 (661)
T ss_pred EEecccCchHHHhhhccCcCCCCeeeccCCChhhhhchhhcccccchhHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999932 123445567788999999999999999999999998
No 33
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=100.00 E-value=2.2e-37 Score=302.22 Aligned_cols=196 Identities=25% Similarity=0.328 Sum_probs=180.3
Q ss_pred CHHHHHHHHHHHHccCCcchhHHHHhHHHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEeecCCCCCCCCCCceEEEEe
Q 021675 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV 193 (309)
Q Consensus 114 ~~~~~~~v~e~la~~d~s~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~ 193 (309)
++.+...+.|++++.|++++..+++|..++..+|..+||++|+++|||++.+|+.++||++|||+||||+.+++|+|+++
T Consensus 80 ~~~~~~~~~e~l~~~d~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~leTtAt~d 159 (610)
T cd01150 80 DPEKMLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYD 159 (610)
T ss_pred CHHHHHHHHHHHhccCccccceeeehHHHHHHHHHHhCCHHHHHHHHHHHhccChheeeeccccCcCcCcccceeEEEEC
Confidence 67788889999999999988778899888889999999999999999999999999999999999999999999999998
Q ss_pred C--CEEEEe-----eeeeeecCCCC-CCEEEEEEEeC---CCCCeEEEEEeCC-------CCCeeEecccCcccccccCc
Q 021675 194 E--GGWILE-----GQKRWIGNSTF-ADVLVIFARNT---TTNQINGYLVKKD-------APGLTVTKIENKIGLRIVQN 255 (309)
Q Consensus 194 ~--~~~~ln-----G~K~~i~~a~~-a~~~~V~a~~~---~~~~~~~flV~~~-------~pGv~v~~~~~~~Gl~~~~~ 255 (309)
+ ++|+|| |+|+||+|++. |++++|+|++. .+.|+++|+||++ .|||++.++++|+|+++++|
T Consensus 160 ~~t~efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl~~~g~~~Gv~~FlVp~rd~~~~~~~pGV~i~~~~~k~G~~g~dn 239 (610)
T cd01150 160 PLTQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLITPGKNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMGLNGVDN 239 (610)
T ss_pred CCCCeEEECCCCCCceEECccCcccCCCEEEEEEEeccCCCCCCeEEEEEeccccccCCCCCCeEEeecccccCCCCCCe
Confidence 8 899999 99999999865 99999999973 2368999999974 39999999999999999999
Q ss_pred eeEEEceeeeCCCCCcCC----------------C-CCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 021675 256 GDILLKKVFVPDEDRLPG----------------V-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRY 309 (309)
Q Consensus 256 ~~l~f~~v~Vp~~~~l~~----------------~-~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~Y 309 (309)
+.+.|+||+||++++|+. . .++......+..+|+.+++.++|.+++|+++|++|
T Consensus 240 g~l~Fd~vrVP~~nlL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~~~~gRl~ia~~a~g~~~~al~iAi~Y 310 (610)
T cd01150 240 GFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGRVGLIYDAAMSLKKAATIAIRY 310 (610)
T ss_pred EEEEEeeeEecHHHhcccccccCCCCceecCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999974 2 45677788899999999999999999999999988
No 34
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=100.00 E-value=2.6e-35 Score=277.21 Aligned_cols=233 Identities=20% Similarity=0.230 Sum_probs=197.9
Q ss_pred HHHHHhhcCccHHHHHHhCC------CC---HHHHHHHHhCCcccccc-ccCCCCCCCHHHHHHHHHHHHccCCcchhHH
Q 021675 67 RECMEKEIAPIMAEYWEKAE------FP---FHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFI 136 (309)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~------~~---~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~s~~~~~ 136 (309)
.++++.+ .|...++|..++ +| .++++++.+.||+++ + ..+|+.| ......+.+.++..+.+++..+
T Consensus 38 ~~~a~~~-~P~~~~~d~~g~r~~~v~~~~~~~~~~~~~~~~G~~~~-~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~p~ 113 (418)
T cd01154 38 ARLADRN-PPVLEMWDRWGRRVDRVWVHPAWHALMRRLIEEGVINI-EDGPAGEGR--RHVHFAAGYLLSDAAAGLLCPL 113 (418)
T ss_pred HHHhhcC-CCcccCCCCCCCcCCeEEeCHHHHHHHHHHHHcCCccC-CchhhCCCc--HHHHHHHHHHHHhcchhccCcH
Confidence 3456665 677777877666 67 778899999999998 5 5666544 3444555677777776666665
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHhHHHhccc----ceeEEEeecCCCCCCCCCCceEEEEe-CCEEEEeeeeeeecCCCC
Q 021675 137 LVHSSLAMLTIALCGSEEQKQKYLPSLAQLN----TIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNSTF 211 (309)
Q Consensus 137 ~~~~~~~~~~l~~~Gt~~qk~~~l~~~~~g~----~~~~~a~tE~~~Gs~~~~~~t~a~~~-~~~~~lnG~K~~i~~a~~ 211 (309)
.+|. .+..+|..+|+++|| +|||++++|+ +++|+++|||++|||+.++.|+|+++ +|+|+|||+|+|++++ .
T Consensus 114 ~~~~-~~~~~l~~~g~~~~~-~~l~~l~~g~~~~~~~~~~~~TEp~~GSD~~~~~T~A~~~~g~~~~LnG~K~f~s~a-~ 190 (418)
T cd01154 114 TMTD-AAVYALRKYGPEELK-QYLPGLLSDRYKTGLLGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASAP-L 190 (418)
T ss_pred HHHH-HHHHHHHHhCcHHHH-HHHHHHhCCCcccchhheeeecCCCcccchhhCeEEEEECCCCcEEEEEEEEEecCc-c
Confidence 5565 467788999998865 6999999997 89999999999999999999999999 8999999999999999 9
Q ss_pred CCEEEEEEEeCCC----CCeEEEEEeCCCC-----CeeEecccCcccccccCceeEEEceeeeCCCCCcCCC-CCHHHHH
Q 021675 212 ADVLVIFARNTTT----NQINGYLVKKDAP-----GLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTS 281 (309)
Q Consensus 212 a~~~~V~a~~~~~----~~~~~flV~~~~p-----Gv~v~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~ 281 (309)
||+++|+|+++++ +++++|+||.+.| ||++.+.++++|++++++++|.|+||+ +++|+.. +++....
T Consensus 191 Ad~~lv~Art~~~~~~~~gls~flVp~~~~~~~~~Gv~i~~~~~~~G~r~~~~~ev~f~dv~---~~~lG~~g~G~~~~~ 267 (418)
T cd01154 191 ADAALVLARPEGAPAGARGLSLFLVPRLLEDGTRNGYRIRRLKDKLGTRSVATGEVEFDDAE---AYLIGDEGKGIYYIL 267 (418)
T ss_pred cCEEEEEEECCCCCCCCCcEEEEEEeccCCCCCCCCeEecccccccCCCCCCeEEEEecCcC---ccccCCCCccHHHHH
Confidence 9999999998532 6789999999875 999999999999999999999999983 7888875 7888888
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 021675 282 KVLAVSRVMVAWQPIGISMGVYDMCHRY 309 (309)
Q Consensus 282 ~~l~~~r~~~aa~~~G~a~~al~~a~~Y 309 (309)
..++..|+.+++.++|+++++++.+++|
T Consensus 268 ~~l~~~R~~~aa~~~G~a~~al~~a~~y 295 (418)
T cd01154 268 EMLNISRLDNAVAALGIMRRALSEAYHY 295 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999876
No 35
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=2e-34 Score=273.54 Aligned_cols=200 Identities=26% Similarity=0.353 Sum_probs=178.3
Q ss_pred HHHhC-Ccccccc-ccCCCCCCCHHHHHHHHHHHHccCCcchhHHHHhHHHHHHHHHhcCCHHHHHHHhHHHhcccceeE
Q 021675 94 KLGAL-RVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIAC 171 (309)
Q Consensus 94 ~l~~~-Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~s~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~~~~g~~~~~ 171 (309)
.++++ ||+++.+ ++|||.|+++.+.+.++|++++.+.+.+..+..|..++...|..+|+++||++|||++++|+.+++
T Consensus 58 ~~~~l~Gl~gl~vPeeyGG~Gl~~~~~a~v~Eelgr~~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~Lp~lasGe~i~A 137 (520)
T PTZ00457 58 NDKILGNLYGARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAMSDGTIMMG 137 (520)
T ss_pred chHhcCCccCCCCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCcEEE
Confidence 46799 9999988 999999999999999999999988776655556666666788889999999999999999999999
Q ss_pred EEeecCCCCCCCCCCceEEEEe-CCEEEEeeeeeeecCCCCCCEEEEEEEeCC----------CCCeEEEEEeCCCCCee
Q 021675 172 WALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNSTFADVLVIFARNTT----------TNQINGYLVKKDAPGLT 240 (309)
Q Consensus 172 ~a~tE~~~Gs~~~~~~t~a~~~-~~~~~lnG~K~~i~~a~~a~~~~V~a~~~~----------~~~~~~flV~~~~pGv~ 240 (309)
++++| +.|||+.++.|+|+++ +|+|+|||+|.|+ |+..||+++|+|++++ .+++.+|+||.+.|||+
T Consensus 138 ~AltE-~aGSD~a~i~TtA~~~~gg~wvLNG~K~~t-~g~~Ad~~lV~Art~~~~~~~~g~~~~~git~FlV~~dapGVt 215 (520)
T PTZ00457 138 WATEE-GCGSDISMNTTKASLTDDGSYVLTGQKRCE-FAASATHFLVLAKTLTQTAAEEGATEVSRNSFFICAKDAKGVS 215 (520)
T ss_pred EEeCC-CCCCccccceeEEEEcCCCeEEEEEEEEEE-cCchhcEEEEEeecCCcccccccccCcCceEEEEEECCCCceE
Confidence 99988 8999999999999986 5579999999976 8889999999999741 13689999999999999
Q ss_pred EecccCcccccccCceeEEEceeeeCCCCCcCCC-CCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 021675 241 VTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRY 309 (309)
Q Consensus 241 v~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~Y 309 (309)
+.. ++|+|+|| |.+++||.. +|++.....++.+|+.+++.++|+++++++.+++|
T Consensus 216 v~~------------~eV~FddV--P~~~vLG~~g~G~~~a~~~L~~~Rl~~aA~~vGia~~ale~av~y 271 (520)
T PTZ00457 216 VNG------------DSVVFENT--PAADVVGVVGEGFKDAMITLFTEQYLYAASLLGIMKRVVQELRGS 271 (520)
T ss_pred Eec------------CEEEECCC--CHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 863 69999997 889999875 78999999999999999999999999999999886
No 36
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-34 Score=283.00 Aligned_cols=181 Identities=21% Similarity=0.344 Sum_probs=161.6
Q ss_pred CCcchhHHHHhHHHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEeecCCCCCCCCCCceEEEEe--CCEEEEe-----e
Q 021675 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----G 201 (309)
Q Consensus 129 d~s~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~--~~~~~ln-----G 201 (309)
+++....+++|..++..+|..+||++||++|||++.+|+.++||++|||+||||+.+++|+|+++ +|+|+|| |
T Consensus 88 ~~~~~~~~~vh~~~~~~~I~~~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~defvLntPt~~g 167 (646)
T PTZ00460 88 CPQGTFISTVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEA 167 (646)
T ss_pred ccCCCceEEeeHhhHHHHHHHhCCHHHHHHHHHHHhCCChheeeeecCCCccCCcccceEEEEEcCCCCEEEECCCCCCe
Confidence 44555566788878888899999999999999999999999999999999999999999999996 6789998 9
Q ss_pred eeeeecC-CCCCCEEEEEEEeCC---CCCeEEEEEeCC-------CCCeeEecccCcccccccCceeEEEceeeeCCCCC
Q 021675 202 QKRWIGN-STFADVLVIFARNTT---TNQINGYLVKKD-------APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDR 270 (309)
Q Consensus 202 ~K~~i~~-a~~a~~~~V~a~~~~---~~~~~~flV~~~-------~pGv~v~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~ 270 (309)
+|+||+| +..||+++|+||+.. ++|+++|+||.+ .|||+++++++|+|+++++++.+.|+||+||++++
T Consensus 168 ~K~wi~~~g~~A~~~vV~Arl~~~~~~~Gi~~FlV~ird~~~~~~~pGV~vg~~~~k~G~~~~dng~l~Fd~VrVP~~nl 247 (646)
T PTZ00460 168 VKFWPGELGFLCNFALVYAKLIVNGKNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKMGYAVKDNGFLSFDHYRIPLDSL 247 (646)
T ss_pred EEEccCCCCCCCCEEEEEEEECcCCCCCceEEEEEeccccCCCCCCCCeEEeccccccCcCCCCceEEEeceEEECHHHh
Confidence 9999998 567999999999842 368999999953 49999999999999999999999999999999999
Q ss_pred cCC-------CC----C-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 021675 271 LPG-------VN----S-FQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRY 309 (309)
Q Consensus 271 l~~-------~~----~-~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~Y 309 (309)
|+. +. + ++.....+..+|+.+++.++|+++.|+++|++|
T Consensus 248 Lg~~~~v~~~G~~~~~g~~~~~~~~l~~~R~~iaa~~~g~a~~Al~iAvrY 298 (646)
T PTZ00460 248 LARYIKVSEDGQVERQGNPKVSYASMMYMRNLIIDQYPRFAAQALTVAIRY 298 (646)
T ss_pred CCcccccCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 974 21 3 667778888999999999999999999999988
No 37
>PLN02443 acyl-coenzyme A oxidase
Probab=100.00 E-value=6.3e-34 Score=278.42 Aligned_cols=175 Identities=26% Similarity=0.397 Sum_probs=155.9
Q ss_pred HHHHhHHHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEeecCCCCCCCCCCceEEEEe--CCEEEEe-----eeeeeec
Q 021675 135 FILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIG 207 (309)
Q Consensus 135 ~~~~~~~~~~~~l~~~Gt~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~--~~~~~ln-----G~K~~i~ 207 (309)
.+.+|..++...|..+||++||++|||++.+|+.++||++|||+||||+.+++|+|+++ +++|+|| |+|+||+
T Consensus 98 ~~~~~~~~f~~~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~~leTtAt~d~~~~efvIntP~~~g~K~wig 177 (664)
T PLN02443 98 YTDLHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPG 177 (664)
T ss_pred eeeehHhHHHHHHHHhCCHHHHHHHHHHHhCCChheEEEecCCCcccchhhCeEEEEEeCCCCEEEECCCCCCEEEEeec
Confidence 45677778888899999999999999999999999999999999999999999999998 6789998 9999999
Q ss_pred CC-CCCCEEEEEEEeC---CCCCeEEEEEeCC-------CCCeeEecccCccc---ccccCceeEEEceeeeCCCCCcCC
Q 021675 208 NS-TFADVLVIFARNT---TTNQINGYLVKKD-------APGLTVTKIENKIG---LRIVQNGDILLKKVFVPDEDRLPG 273 (309)
Q Consensus 208 ~a-~~a~~~~V~a~~~---~~~~~~~flV~~~-------~pGv~v~~~~~~~G---l~~~~~~~l~f~~v~Vp~~~~l~~ 273 (309)
|+ ..|++++|+|++. +++|+++|+||.+ .|||+++++++|+| +++++|+.+.|+||+||++++|+.
T Consensus 178 ~~~~~A~~~vV~Arl~~~~~~~Gv~~FlVp~r~~~~~~~~PGV~vgd~g~K~G~~~~~~~dng~l~Fd~VrVP~~nlLg~ 257 (664)
T PLN02443 178 GLGKVSTHAVVYARLITNGKDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGAYNTMDNGFLRFDHVRIPRDQMLMR 257 (664)
T ss_pred CCcccCCEEEEEEEECCCCCCCCeEEEEEecCCcCcCCCCCCeEEeccccccCcccCCCCcceEEEeCcEEECHHHcCCc
Confidence 97 5699999999974 2368999999986 89999999999999 667999999999999999999974
Q ss_pred C-----CCH--------HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 021675 274 V-----NSF--------QDTSKVLAVSRVMVAWQPIGISMGVYDMCHRY 309 (309)
Q Consensus 274 ~-----~~~--------~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~Y 309 (309)
. +|. +.....+..+|+.+++.++|+++.|+++|++|
T Consensus 258 ~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~i~a~a~g~~~~Al~iAvrY 306 (664)
T PLN02443 258 LSKVTREGKYVQSDVPRQLVYGTMVYVRQTIVADASTALSRAVCIATRY 306 (664)
T ss_pred ccccCCCCceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111 23456788899999999999999999999988
No 38
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=100.00 E-value=1.5e-32 Score=250.56 Aligned_cols=209 Identities=34% Similarity=0.534 Sum_probs=185.6
Q ss_pred HHHHHHHHHHHHHHhhcCccHHHHHHhCCCCHHHHHHHHhCCccccccccCCCCCCCHHHHHHHHHHHHccCCcchhHHH
Q 021675 58 EEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFIL 137 (309)
Q Consensus 58 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~~~~GG~g~~~~~~~~v~e~la~~d~s~~~~~~ 137 (309)
++.++++.+++|+.+++.+.....++ ++...|+.+.++|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~------------------------------------ 42 (327)
T cd00567 2 EQRELRDSAREFAAEELEPYARERRE---TPEEPWELLAELGLL------------------------------------ 42 (327)
T ss_pred hHHHHHHHHHHHHHHhccccHHhHHh---hCCCCHHHHHHHHHH------------------------------------
Confidence 57789999999999998888775444 444556667777766
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEeecCCCCCCCCCCceEEEEeCCEEEEeeeeeeecCCCCCCEEEE
Q 021675 138 VHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVI 217 (309)
Q Consensus 138 ~~~~~~~~~l~~~Gt~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~lnG~K~~i~~a~~a~~~~V 217 (309)
++..+|..+|+++||++||+.+.+|+.++++++|||++|++...+.++++++++||+|||+|+|++++..||+++|
T Consensus 43 ----~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv 118 (327)
T cd00567 43 ----LGAALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDADLFIV 118 (327)
T ss_pred ----hchHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEeCCEEEEEEEEEEecCCccCCEEEE
Confidence 3445677789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCC----CCCeEEEEEeCCCCCeeEecccCcccccccCceeEEEceeeeCCCCCcCCC-CCHHHHHHhhhHHHHHHH
Q 021675 218 FARNTT----TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVA 292 (309)
Q Consensus 218 ~a~~~~----~~~~~~flV~~~~pGv~v~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~~l~~~r~~~a 292 (309)
+++.++ ..++.+|+||.+.||+++.+.|+++|+++++++.+.|+||+||++++|+.. .++......+...|+.++
T Consensus 119 ~a~~~~~~~~~~~~~~~lvp~~~~Gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~a 198 (327)
T cd00567 119 LARTDEEGPGHRGISAFLVPADTPGVTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGEEGGGFELAMKGLNVGRLLLA 198 (327)
T ss_pred EEEeCCCCCCCCceEEEEEeCCCCCeEeccccccccCCCCceEEEEECCEEecHHHcCCCCCchHHHHHHHHHHHHHHHH
Confidence 999753 246789999999999999999999999999999999999999999999875 566677888999999999
Q ss_pred HHHHHHHHHHHHHHhcC
Q 021675 293 WQPIGISMGVYDMCHRY 309 (309)
Q Consensus 293 a~~~G~a~~al~~a~~Y 309 (309)
++++|+++++++.+++|
T Consensus 199 a~~~G~a~~al~~~~~~ 215 (327)
T cd00567 199 AVALGAARAALDEAVEY 215 (327)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999876
No 39
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=100.00 E-value=3e-33 Score=259.65 Aligned_cols=227 Identities=18% Similarity=0.175 Sum_probs=187.1
Q ss_pred HHHHHHhhcCccHHHHHHhCCCCHHHHHHHHhCCcccccc-ccCCCCCCCHHHHHHHHHHHHccCCcchhHHHHhHHHHH
Q 021675 66 VRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAM 144 (309)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~s~~~~~~~~~~~~~ 144 (309)
++++++. +.+.+.++|+++.+|.+.|+.|++.||+++.+ ++|||.|.++.+...+++++++.|+|+++.+..+. ...
T Consensus 3 ~~~~~~~-~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~-~~~ 80 (370)
T cd01159 3 AEDLAPL-IRERAPEAERARRLPDEVVRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVA-THS 80 (370)
T ss_pred HHHHHHH-HHHhHHHHHHcCCCCHHHHHHHHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHH-HHH
Confidence 3445554 67778888888999999999999999999988 99999999999999999999999999887655444 445
Q ss_pred HHHHhcCCHHHHHHHhHHHhcccceeEEEeecCCCCCCCCCCceEEEEeCCEEEEeeeeeeecCCCCCCEEEEEEEeCC-
Q 021675 145 LTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTT- 223 (309)
Q Consensus 145 ~~l~~~Gt~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~lnG~K~~i~~a~~a~~~~V~a~~~~- 223 (309)
..+..+++++|++.|++.. .+ ..+ | ...+.|+|++++|+|+|||+|.|||++..+|+++|.+++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~-~~--~~~--------g--~~~~~t~A~~~~~gy~lnG~K~~it~~~~ad~~~v~a~~~~~ 147 (370)
T cd01159 81 RMLAAFPPEAQEEVWGDGP-DT--LLA--------G--SYAPGGRAERVDGGYRVSGTWPFASGCDHADWILVGAIVEDD 147 (370)
T ss_pred HHHHhCCHHHHHHHhCCCC-Cc--eEE--------e--eecCCceeEEeCCeEEEeccccCccCCCcCceeEeeeECCCC
Confidence 6778889999999887642 11 111 1 12456789999999999999999999999999999999753
Q ss_pred --CCCeEEEEEeCCCCCeeEecccCcccccccCceeEEEceeeeCCCCCcCCC-------CCHH---HHHHhhhHHHHHH
Q 021675 224 --TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-------NSFQ---DTSKVLAVSRVMV 291 (309)
Q Consensus 224 --~~~~~~flV~~~~pGv~v~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-------~~~~---~~~~~l~~~r~~~ 291 (309)
..++.+|+||.+ ||++.+.|+++|+++++++.++|+||+||++++|+.. .++. .........|+.+
T Consensus 148 ~~~~~~~~~lV~~~--Gv~~~~~~~~~G~r~~~s~~v~f~~v~Vp~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 225 (370)
T cd01159 148 DGGPLPRAFVVPRA--EYEIVDTWHVVGLRGTGSNTVVVDDVFVPEHRTLTAGDMMAGDGPGGSTPVYRMPLRQVFPLSF 225 (370)
T ss_pred CCCCcceEEEEEhH--HCEEecccccccccccCCCcEEEcceEcCccceecccccccCCCCCCCCccccCchHHHHHHHH
Confidence 246889999987 9999999999999999999999999999999999642 1211 2233556788999
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 021675 292 AWQPIGISMGVYDMCHRY 309 (309)
Q Consensus 292 aa~~~G~a~~al~~a~~Y 309 (309)
+++++|+++++++.+++|
T Consensus 226 aa~~lG~a~~~l~~~~~~ 243 (370)
T cd01159 226 AAVSLGAAEGALAEFLEL 243 (370)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999876
No 40
>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only]
Probab=99.98 E-value=4.5e-32 Score=228.76 Aligned_cols=211 Identities=22% Similarity=0.313 Sum_probs=178.2
Q ss_pred HHhCCcccccc----ccCCCCCCCHHHHHHHHHHHHccCCcchhH-HHHhHHHHHHHHHhcCCHHHHHHHhHHHhcccce
Q 021675 95 LGALRVAGGTI----KGYGCPGHSVTGAAIAIAEIARVDASCSTF-ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTI 169 (309)
Q Consensus 95 l~~~Gl~~~~~----~~~GG~g~~~~~~~~v~e~la~~d~s~~~~-~~~~~~~~~~~l~~~Gt~~qk~~~l~~~~~g~~~ 169 (309)
-+..|++++++ ..|| .|++..+++.++|.+++.--.--++ ......-.+..|..+|+++||.+||-++.+|++.
T Consensus 36 aK~eGlWNLFlp~~~qkyg-~GLtnveYa~icElmGrs~~APeVfNC~APDTGNMEvl~rYGseeQks~WL~PLLeG~ir 114 (392)
T KOG1469|consen 36 AKVEGLWNLFLPAVSQKYG-AGLTNVEYAHICELMGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKSQWLIPLLEGNIR 114 (392)
T ss_pred HHhcchHHhhhHHHHHhhc-cCccchhHHHHHHHhccccccchhccCCCCCCCCeeehhhhCCHHHHhhHhHHHhcCCce
Confidence 34589999865 2454 7899999999999999863211111 1112223567899999999999999999999999
Q ss_pred eEEEeecCCC-CCCCCCCceEEEEeCCEEEEeeeeeeecCCCC--CCEEEEEEEeCCC-----CCeEEEEEeCCCCCeeE
Q 021675 170 ACWALTEPAY-GSDASALNTTATKVEGGWILEGQKRWIGNSTF--ADVLVIFARNTTT-----NQINGYLVKKDAPGLTV 241 (309)
Q Consensus 170 ~~~a~tE~~~-Gs~~~~~~t~a~~~~~~~~lnG~K~~i~~a~~--a~~~~V~a~~~~~-----~~~~~flV~~~~pGv~v 241 (309)
.||+||||+. .||+.++++..++++|.|+|||.|||++|+.. +.+.+++.+++.. .+.++.|||.++|||.|
T Consensus 115 ScFaMTEP~VASSDATNIe~SI~r~~~~YvINg~KWw~sga~~PkCrv~i~mGkt~~~~~~rhkQqSmiLVpM~TpGvki 194 (392)
T KOG1469|consen 115 SCFAMTEPDVASSDATNIECSIRRDGDSYVINGKKWWISGAGDPKCRIAIFMGKTDNTSASRHKQQSMILVPMNTPGVKI 194 (392)
T ss_pred eeEeecCCcccccccccceEEEEEcCCEEEEecceeeecCCCCCceEEEEEecccCCCccchhhcccEEEEecCCCCeeE
Confidence 9999999995 78999999999999999999999999999955 7888988887543 56789999999999999
Q ss_pred ecccCcccccccC--ceeEEEceeeeCCCCCcCC-CCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 021675 242 TKIENKIGLRIVQ--NGDILLKKVFVPDEDRLPG-VNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMC 306 (309)
Q Consensus 242 ~~~~~~~Gl~~~~--~~~l~f~~v~Vp~~~~l~~-~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a 306 (309)
.++.+.+|....+ ..+|+|+||+||..|+|-+ +.||++.+..|..+|+..|.-.+|.++++++.-
T Consensus 195 iRpltVfG~~DapgGH~Ei~F~~VrVP~~NmlLGeGrGFEIaQGRLGPGRiHHcMRliG~aERal~lm 262 (392)
T KOG1469|consen 195 IRPLTVFGYTDAPGGHFEIHFENVRVPATNMLLGEGRGFEIAQGRLGPGRIHHCMRLIGLAERALQLM 262 (392)
T ss_pred eeeeeeeccccCCCCcceEEEEEEEeeccceeecCCCcceeeccccCCcHHHHHHHHhhHHHHHHHHH
Confidence 9999999988653 5689999999999998855 589999999999999999999999999999864
No 41
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=99.97 E-value=3.4e-30 Score=246.22 Aligned_cols=210 Identities=18% Similarity=0.204 Sum_probs=171.2
Q ss_pred HHHHHHHhCCcccccc-ccCCCCCCCHHHHHHHHHHHHccCCcchhHHHHhHHHHHHHHHhcCCHHHHHHHhHHHhccc-
Q 021675 90 HVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLN- 167 (309)
Q Consensus 90 ~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~s~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~~~~g~- 167 (309)
++++.+.+.|+.++.. +++| .+ .....+......+..+..+...+.++ .+...+..+|+++||++|||++.+|+
T Consensus 90 ~~~~~~~~~g~~~~~~~~~~~-~~-~~~~~~~~~~l~~~~~~g~~cp~~mT--~~a~~~l~~~~~e~~~~~lp~l~sg~~ 165 (538)
T PRK11561 90 LLMQGLCANRVHNLAWEEDAR-SG-AFVARAARFMLHAQVEAGTLCPITMT--FAATPLLLQMLPAPFQDWLTPLLSDRY 165 (538)
T ss_pred HHHHHHHHcCCccCCCCCccC-ch-HHHHHHHHHHHHhhhhHHhhchHHHH--HHHHHHHHhcCHHHHHHHHHHHhCCCc
Confidence 4566677889888766 5665 22 22333333333444444443333333 33455666789999999999999987
Q ss_pred ------------ceeEEEeecCCCCCCCCCCceEEEE-eCCEEEEeeeeeeecCCCCCCEEEEEEEeCCCCCeEEEEEeC
Q 021675 168 ------------TIACWALTEPAYGSDASALNTTATK-VEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKK 234 (309)
Q Consensus 168 ------------~~~~~a~tE~~~Gs~~~~~~t~a~~-~~~~~~lnG~K~~i~~a~~a~~~~V~a~~~~~~~~~~flV~~ 234 (309)
+++++++|||++|||+..+.|+|++ ++|+|+|||+|+||+ ++.||+++|+||++ +++++|+||+
T Consensus 166 ~~~~~~~~~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~gg~w~LnG~K~fiS-a~~AD~~lVlArt~--~Gls~FlVp~ 242 (538)
T PRK11561 166 DSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHKWFFS-VPQSDAHLVLAQAK--GGLSCFFVPR 242 (538)
T ss_pred ccccccchhhhhheeEEEecCCCCCCchhhCeeEEEECCCCeEEEEEEEEEEE-chhhCEEEEEEEEC--CceEEEEEEC
Confidence 4569999999999999999999999 467899999999999 67899999999986 6899999999
Q ss_pred CCC-----CeeEecccCcccccccCceeEEEceeeeCCCCCcCCC-CCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 021675 235 DAP-----GLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHR 308 (309)
Q Consensus 235 ~~p-----Gv~v~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ 308 (309)
+.| ||++.+.++|+|++++++++|.|+|| .+++||.. +|+..+...++..|+..++.++|++++|++.|++
T Consensus 243 ~~p~g~~nGv~i~rl~~klG~r~~~t~ev~f~dv---~~~llG~~g~G~~~i~~~l~~~Rl~~a~~a~G~a~~Al~~A~~ 319 (538)
T PRK11561 243 FLPDGQRNAIRLERLKDKLGNRSNASSEVEFQDA---IGWLLGEEGEGIRLILKMGGMTRFDCALGSHGLMRRAFSVAIY 319 (538)
T ss_pred CCCCCCCCceEEecccccccCCCCceeEEEECCH---HHHHCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988 79999999999999999999999999 37889875 7899999999999999999999999999999988
Q ss_pred C
Q 021675 309 Y 309 (309)
Q Consensus 309 Y 309 (309)
|
T Consensus 320 y 320 (538)
T PRK11561 320 H 320 (538)
T ss_pred H
Confidence 7
No 42
>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism]
Probab=99.92 E-value=3.3e-25 Score=207.39 Aligned_cols=181 Identities=22% Similarity=0.293 Sum_probs=152.1
Q ss_pred CCcchhHHHHhHHHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEeecCCCCCCCCCCceEEEEeC--CEEEEe-----e
Q 021675 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVE--GGWILE-----G 201 (309)
Q Consensus 129 d~s~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~--~~~~ln-----G 201 (309)
...-+..+.+|.++...+|..-||+||.++||++-...+++||+|.||.+||+++++++|+|+++. +.|+|| .
T Consensus 104 ~~~~~~pl~lH~~MFvp~l~~q~t~EQ~~~Wl~~a~~~~IiGtYAQTElGHGTnl~~LET~AtyD~~T~eFVl~TPt~ta 183 (670)
T KOG0136|consen 104 LGQEGHPLALHYGMFVPTLKGQGTDEQQEKWLSRALNMEIIGTYAQTELGHGTNLRGLETTATYDPKTQEFVLNTPTLTA 183 (670)
T ss_pred cccCCchhhhhhhhhhhHhhcCCCHHHHHHHHHhcccceEEEeehhhhhcccccccccceeeeecCCcceEEecCCCcce
Confidence 334455677899899999999999999999999999999999999999999999999999999975 569998 8
Q ss_pred eeeeecCCCC-CCEEEEEEEe---CCCCCeEEEEEeCC-------CCCeeEecccCcccccccCceeEEEceeeeCCCCC
Q 021675 202 QKRWIGNSTF-ADVLVIFARN---TTTNQINGYLVKKD-------APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDR 270 (309)
Q Consensus 202 ~K~~i~~a~~-a~~~~V~a~~---~~~~~~~~flV~~~-------~pGv~v~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~ 270 (309)
.|||.++.+. ++|.+|.|++ +...|++.|+||.+ .|||+|++++.|||.++++||.+.||||+||++|+
T Consensus 184 ~KWWPGgLG~ssnhAvV~AqL~~~gk~~G~h~FiV~lRd~~th~pL~Gi~iGDIG~Kmg~ng~dNGfL~f~nvRIPR~nm 263 (670)
T KOG0136|consen 184 TKWWPGGLGKSSNHAVVVAQLITKGKCYGPHPFIVQLRDEDTHKPLPGITVGDIGPKMGFNGVDNGFLGFDNVRIPRTNM 263 (670)
T ss_pred ecccCCccccccchheeeeeeeecccccccceeEEEccCccccCCCCCCeecCCCccccccCCccceeeecceeechHhh
Confidence 9999999876 8999999997 34579999999987 67999999999999999999999999999999999
Q ss_pred cCC-----CCC-------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 021675 271 LPG-----VNS-------FQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRY 309 (309)
Q Consensus 271 l~~-----~~~-------~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~Y 309 (309)
|-. .+| .......+-..|..++....=....|..+|++|
T Consensus 264 Lmr~~kV~~dGtyv~p~~~~l~Y~tMv~vRs~mv~d~a~~La~A~tIAtRY 314 (670)
T KOG0136|consen 264 LMRHAKVEPDGTYVKPPHPKLGYGTMVYVRSLMVMDQARFLAKAATIATRY 314 (670)
T ss_pred hhhhheecCCCccccCCccccceeeeEEEeehhHHHHHHHHHHHHHHHHHH
Confidence 932 111 122233344556666666666777788888887
No 43
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
Probab=99.80 E-value=2.2e-19 Score=138.42 Aligned_cols=112 Identities=45% Similarity=0.544 Sum_probs=104.7
Q ss_pred CHHHHHHHHHHHHHHHhhcCccHHHHHHhCCCCHHHHHHHHhCCcccccc-ccCCCCCCCHHHHHHHHHHHHccCCcchh
Q 021675 56 TSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCST 134 (309)
Q Consensus 56 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~s~~~ 134 (309)
|++++++++.+++|+++++.|...++++++.+|.++|+++.+.|++++.+ ++|||.|.++.+.+.+.+++++.|.++++
T Consensus 1 t~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~~~~~~p~~~GG~~~~~~~~~~~~e~l~~~~~~~~~ 80 (113)
T PF02771_consen 1 TEEQQALREEAREFAEEEIAPHAAEWDEDGRFPREVWRALGEAGLLGLAVPEEYGGLGLSPLELAIVLEELARADASLAF 80 (113)
T ss_dssp SHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCHHHHHHHHHHTTTTSTTSCGGGTSEB-THHHHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHchHHHHHHHHhCCCCHHHHHHHHHHHHhhhhccccccCcchhhhhHHHHHHhhhhhcccccc
Confidence 57899999999999999999988888888899999999999999999988 99999999999999999999999999998
Q ss_pred HHHHhHHHHHHHHHhcCCHHHHHHHhHHHhccc
Q 021675 135 FILVHSSLAMLTIALCGSEEQKQKYLPSLAQLN 167 (309)
Q Consensus 135 ~~~~~~~~~~~~l~~~Gt~~qk~~~l~~~~~g~ 167 (309)
.+++|.++++.+|..+|+++||++|||++.+|+
T Consensus 81 ~~~~~~~l~~~~i~~~gs~eq~~~~lp~~~~Ge 113 (113)
T PF02771_consen 81 ALGVHQSLGAPPIAKFGSEEQKEKWLPRLASGE 113 (113)
T ss_dssp HHHHHHHCHHHHHHHHSHHHHHHHHHHHHHTTS
T ss_pred hhhhhhHHHHHHHHHHCCHHHHHHHhHHHhCCC
Confidence 888988787789999999999999999999986
No 44
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=99.66 E-value=2.6e-16 Score=103.67 Aligned_cols=52 Identities=44% Similarity=0.742 Sum_probs=47.2
Q ss_pred EEEeecCCCCCCCCCCceEEEEeCCEEEEeeeeeeecCCCCCCEEEEEEEeC
Q 021675 171 CWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT 222 (309)
Q Consensus 171 ~~a~tE~~~Gs~~~~~~t~a~~~~~~~~lnG~K~~i~~a~~a~~~~V~a~~~ 222 (309)
||++|||++|+|+..++|++++++++|+|||+|+||++++.||+++|+||++
T Consensus 1 ~~a~tE~~~g~d~~~~~t~a~~~~~~~~L~G~K~~v~~~~~a~~~~v~ar~d 52 (52)
T PF02770_consen 1 AFALTEPGAGSDLAAVETTARRDGDGYVLNGEKRFVSNAPDADWFLVFARTD 52 (52)
T ss_dssp EEE--BTTBSSSGGG-SSEEEEETTEEEEEEEEEEEETTTTESEEEEEEEES
T ss_pred CEEEcCCCCCCCcccCEEEeecccceEEEeeEEEEECCcCccCEEEEEEEEC
Confidence 6899999999999999999999999999999999999999999999999973
No 45
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.65 E-value=3.3e-15 Score=141.88 Aligned_cols=148 Identities=19% Similarity=0.252 Sum_probs=115.3
Q ss_pred HHHHhHHHhcccceeEEEeecCCC-CC----CCCC--Cce-EEEEeCCEEEEeeeeeeecCCCCCCEEEEEEEeCCC---
Q 021675 156 KQKYLPSLAQLNTIACWALTEPAY-GS----DASA--LNT-TATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTT--- 224 (309)
Q Consensus 156 k~~~l~~~~~g~~~~~~a~tE~~~-Gs----~~~~--~~t-~a~~~~~~~~lnG~K~~i~~a~~a~~~~V~a~~~~~--- 224 (309)
-++|+..+.+.++..+-+++.|.. -| .... +.. ..++++|||+|||.|.|+|++ .||.++|++++...
T Consensus 129 ~~~y~~~~~~~dl~~~~a~~dp~~dRs~~~~~~~d~~~~~~Vve~~~dGiVV~GaK~~~T~~-~ad~~~V~~~~~~~~~~ 207 (477)
T TIGR02309 129 VRNYYEYLRDNDLALTHALTNPQVNRAKPPSEQPDPYIALGVVEQTDKGVIVRGARMTATFP-IADEILIFPSTVLKAGA 207 (477)
T ss_pred HHHHHHHHHHhCceeeccccCCCCCCCCChhhcCCCCcceeEEEEcCCCEEEeCHHHhhhhc-ccceEEEeccCCCCCcc
Confidence 458999999999999999999873 12 1111 222 344578899999999999996 99999999987431
Q ss_pred -CC--eEEEEEeCCCCCeeEecccCccccccc-----------CceeEEEceeeeCCCCC--cCCC----CCHHHHHHhh
Q 021675 225 -NQ--INGYLVKKDAPGLTVTKIENKIGLRIV-----------QNGDILLKKVFVPDEDR--LPGV----NSFQDTSKVL 284 (309)
Q Consensus 225 -~~--~~~flV~~~~pGv~v~~~~~~~Gl~~~-----------~~~~l~f~~v~Vp~~~~--l~~~----~~~~~~~~~l 284 (309)
++ ..+|+||.++||+++....+++|.++. ..+.|.||||+||++++ ++.. .+|...
T Consensus 208 ~~~~ya~~F~VP~dtpGl~~i~r~~~~~~~~~~D~plssrfde~da~vvFDdV~VPwe~VF~~g~~e~a~~~f~~~---- 283 (477)
T TIGR02309 208 EKDPYALAFAIPTNTPGLHFVCREALDGGDSPFDHPLSSRFEEMDALVIFDDVLVPWERIFILGDVELCNNAYAAT---- 283 (477)
T ss_pred CCCCeEEEEEeeCCCCceEEEeCCccCCCCCcccCccccccCCCeEEEEeCceeccHHHhhhcCCHHHHHHHHHHH----
Confidence 22 689999999999999999999998876 56899999999999999 6653 222221
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcC
Q 021675 285 AVSRVMVAWQPIGISMGVYDMCHRY 309 (309)
Q Consensus 285 ~~~r~~~aa~~~G~a~~al~~a~~Y 309 (309)
..++..+++++|.+.++++.++.|
T Consensus 284 -~~~~~~~~~~~g~~~~~ld~~~g~ 307 (477)
T TIGR02309 284 -GAVNHMAHQVVALKIAKTEAFLGV 307 (477)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234667889999999999988754
No 46
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=98.63 E-value=2.4e-07 Score=81.16 Aligned_cols=117 Identities=18% Similarity=0.329 Sum_probs=76.3
Q ss_pred HHHHHhHHHhcccceeEEEeecCCC--CCCC-C---CCceEEE-EeCCEEEEeeeeeeecCCCCCCEEEEEEEeC---CC
Q 021675 155 QKQKYLPSLAQLNTIACWALTEPAY--GSDA-S---ALNTTAT-KVEGGWILEGQKRWIGNSTFADVLVIFARNT---TT 224 (309)
Q Consensus 155 qk~~~l~~~~~g~~~~~~a~tE~~~--Gs~~-~---~~~t~a~-~~~~~~~lnG~K~~i~~a~~a~~~~V~a~~~---~~ 224 (309)
--.+|+..+.++++..+.+++.|.. +..+ . .+-...+ ++++|.+|+|.|...|+++.+|.++|+-... .+
T Consensus 124 n~~~y~~~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee~~dGIvVrGAK~~~T~a~~adei~V~p~~~~~~~d 203 (264)
T PF11794_consen 124 NIRRYYEYVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVEETDDGIVVRGAKMLATGAPYADEILVFPTRAMRPGD 203 (264)
T ss_dssp HHHHHHHHHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEEE-SSEEEEEEEEEEEETGCCSSEEEE--SSSSTTCC
T ss_pred HHHHHHHHHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEEEcCCCEEEeChhhhhcCCcccccEEEeeccCCCCCC
Confidence 3457889999999999999999973 2222 1 2344444 4788999999999999999999999985432 12
Q ss_pred -CCeEEEEEeCCCCCeeEecccCccccc--ccC----------ceeEEEceeeeCCCCCc
Q 021675 225 -NQINGYLVKKDAPGLTVTKIENKIGLR--IVQ----------NGDILLKKVFVPDEDRL 271 (309)
Q Consensus 225 -~~~~~flV~~~~pGv~v~~~~~~~Gl~--~~~----------~~~l~f~~v~Vp~~~~l 271 (309)
.-...|.||.+.||+++.........+ ..+ -+-+.||||+||+++++
T Consensus 204 ~dyAv~FavP~~tpGlk~i~R~s~~~~~~~~~D~PlssrfdE~Da~vvFDdVfVPWeRVF 263 (264)
T PF11794_consen 204 EDYAVAFAVPMNTPGLKIICRESYADGRRSPFDHPLSSRFDEMDALVVFDDVFVPWERVF 263 (264)
T ss_dssp GGG-EEEEEETT-TTEEEEE---TTGCCG-TTT-TTTTS----EEEEEEEEEEEEGGGEE
T ss_pred CceEEEEEccCCCCCEEEEeCCCCCCCccccCcCCcccccCCceEEEEECCcccchhhcc
Confidence 335689999999999887554433322 111 36789999999999875
No 47
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=98.38 E-value=1.8e-05 Score=75.80 Aligned_cols=117 Identities=15% Similarity=0.204 Sum_probs=83.2
Q ss_pred HHHHHhHHHhcccceeEEEeecCCC-CC-CC---CCCceEE-EEeCCEEEEeeeeeeecCCCCCCEEEE-EEEe---CCC
Q 021675 155 QKQKYLPSLAQLNTIACWALTEPAY-GS-DA---SALNTTA-TKVEGGWILEGQKRWIGNSTFADVLVI-FARN---TTT 224 (309)
Q Consensus 155 qk~~~l~~~~~g~~~~~~a~tE~~~-Gs-~~---~~~~t~a-~~~~~~~~lnG~K~~i~~a~~a~~~~V-~a~~---~~~ 224 (309)
--++|+..+.+.++..+-+++.|.. -| .+ ..+-... +++++|.+|+|.|...|+++.+|.++| +.+. .++
T Consensus 137 n~~~yy~~~qenDL~~~hA~~dPk~DRsk~p~e~~D~~v~VVee~~dGIVVrGAK~~aT~a~~a~ei~V~~~~~~~~~~d 216 (519)
T TIGR02310 137 NARNWYKRIQESCLYFNHAIVNPPIDRNKPIDQVKDVYIKIEEERDDGIVVSGAKVVATNSALTHYNFIGFGSAQIIGDN 216 (519)
T ss_pred HHHHHHHHHHHhCceeecceeCCCCCCCCccccCCCCceEEEEEcCCcEEEeCHHHHhcccchhcceeeccCcccccCCC
Confidence 3458999999999999999999873 11 11 1222333 446789999999999999999998888 4443 123
Q ss_pred C-CeEEEEEeCCCCCeeEecccCcc-c-------cc-------ccCceeEEEceeeeCCCCCc
Q 021675 225 N-QINGYLVKKDAPGLTVTKIENKI-G-------LR-------IVQNGDILLKKVFVPDEDRL 271 (309)
Q Consensus 225 ~-~~~~flV~~~~pGv~v~~~~~~~-G-------l~-------~~~~~~l~f~~v~Vp~~~~l 271 (309)
. --..|.||.++||+++......- + .. +-.-+-+.||||+||+|+++
T Consensus 217 ~dyAvaFavP~dtpGlk~IcR~s~~~~~~~~~~~fD~PlssrfdE~Da~vVFDdVfVPWErVF 279 (519)
T TIGR02310 217 DDFALMFIAPMDAEGVKLICRHSYELVAGATGSPFDYPLSSRFDENDAILVMDSVFIPWENVL 279 (519)
T ss_pred CCeEEEEEeEcCCCceEEEeCCchhhccccCCCCCcCccccccCCceEEEEeCCcccchHHce
Confidence 3 34579999999999887443211 0 00 11135688999999999999
No 48
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.22 E-value=1.5e-05 Score=74.29 Aligned_cols=122 Identities=17% Similarity=0.296 Sum_probs=85.3
Q ss_pred cCCHH--HHHHHhHHHhcccceeEEEeecCCCC-C-CC---C--CCceEEE-EeCCEEEEeeeeeeecCCCCCCEEEEE-
Q 021675 150 CGSEE--QKQKYLPSLAQLNTIACWALTEPAYG-S-DA---S--ALNTTAT-KVEGGWILEGQKRWIGNSTFADVLVIF- 218 (309)
Q Consensus 150 ~Gt~~--qk~~~l~~~~~g~~~~~~a~tE~~~G-s-~~---~--~~~t~a~-~~~~~~~lnG~K~~i~~a~~a~~~~V~- 218 (309)
+|++- .-.+|+..+...++..+-|+|.|..- | -+ . .+-...+ .+++|.++.|.|..+|+++.+|.++|+
T Consensus 125 ~~~dy~~n~~~~~k~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVvee~~dGIVVrGAK~~aT~~a~tdei~V~P 204 (493)
T COG2368 125 FGTDYHENAREYYKEVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVEETEDGIVVRGAKALATGSALTDEIFVLP 204 (493)
T ss_pred ccchHHHHHHHHHHHHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEEEecCceEEEChHHHhccccccceEEEee
Confidence 45554 34589999999999989999998631 1 11 1 1233333 467899999999999999999988888
Q ss_pred EEe--CCC-CCeEEEEEeCCCCCeeEecccC---cccccccC------------ceeEEEceeeeCCCCCc
Q 021675 219 ARN--TTT-NQINGYLVKKDAPGLTVTKIEN---KIGLRIVQ------------NGDILLKKVFVPDEDRL 271 (309)
Q Consensus 219 a~~--~~~-~~~~~flV~~~~pGv~v~~~~~---~~Gl~~~~------------~~~l~f~~v~Vp~~~~l 271 (309)
.+. +++ +-...|.+|.++||+.+.-... .-|+.+.+ -+-+.||||+||+|+++
T Consensus 205 t~~~~~~d~dfAv~FaiP~dt~GvK~i~r~s~~~~~~~~~g~fd~plssrfde~dailVfDdVfVPWERVf 275 (493)
T COG2368 205 TRSMQEDDKDFAVAFAIPMDTEGVKFICRRSYELGRGAEGGPFDYPLSSRFDENDAILVFDDVFVPWERVF 275 (493)
T ss_pred ccccCCCCCceEEEEEcccCCCceEEEecCcchhhcccCCCCCCCccccccccCceEEEecccccchhhee
Confidence 332 222 3356899999999988764432 11111122 23489999999999998
No 49
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A.
Probab=96.54 E-value=0.015 Score=45.32 Aligned_cols=36 Identities=31% Similarity=0.376 Sum_probs=29.6
Q ss_pred hHHHHhHHHHHHHHHhcCCHHHHHHHhHHHhcccce
Q 021675 134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTI 169 (309)
Q Consensus 134 ~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~~~~g~~~ 169 (309)
..+++|.+++..+|...||+||+++|||+..+.+++
T Consensus 90 ~p~~lH~~mFip~I~~qgt~EQ~~~Wlp~a~~~~Ii 125 (125)
T PF14749_consen 90 LPLGLHFGMFIPTIMGQGTEEQQAKWLPKAENYEII 125 (125)
T ss_dssp -THHHHHHTHHHHHHHHS-HHHHHHHHHHHHTTSS-
T ss_pred chhhhHHHHHHHHHHHcCCHHHHHHHHHHHHCCccC
Confidence 345689999999999999999999999999887753
No 50
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=56.01 E-value=44 Score=28.56 Aligned_cols=65 Identities=14% Similarity=0.194 Sum_probs=45.5
Q ss_pred hCCCCHHHHHHHHh-CCcccccc-ccCCCCCCCHHHHHHHHHHHHccCCcchhHHHHhHHHHHHHHHhcCCHHHHHHHhH
Q 021675 84 KAEFPFHVIPKLGA-LRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLP 161 (309)
Q Consensus 84 ~~~~~~~~~~~l~~-~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~s~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~ 161 (309)
+..+..+++++++. +|..++.+ -+.- ++.++.++++.|- .|+ .+|++.|.++.|+++|.
T Consensus 98 etTISAKvm~~ikavLgaTKiDLPVDIN----DPYDlGLLLRhLR-----------HHS----NLLAnIgdP~VreqVLs 158 (238)
T PF02084_consen 98 ETTISAKVMEDIKAVLGATKIDLPVDIN----DPYDLGLLLRHLR-----------HHS----NLLANIGDPEVREQVLS 158 (238)
T ss_pred CccccHHHHHHHHHHhcccccccccccC----ChhhHHHHHHHHH-----------HHH----HHHhhcCCHHHHHHHHH
Confidence 45666677777765 67777754 3322 6778888877762 233 46889999999999999
Q ss_pred HHhccc
Q 021675 162 SLAQLN 167 (309)
Q Consensus 162 ~~~~g~ 167 (309)
.+.+.+
T Consensus 159 AMqEee 164 (238)
T PF02084_consen 159 AMQEEE 164 (238)
T ss_pred HHhhhH
Confidence 887653
No 51
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=55.19 E-value=43 Score=22.63 Aligned_cols=50 Identities=20% Similarity=0.171 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHHHHHHhh-cCccHHHHHHhCCCC-----HHHHHHHHhCCcccc
Q 021675 54 LLTSEEQAVRMKVRECMEKE-IAPIMAEYWEKAEFP-----FHVIPKLGALRVAGG 103 (309)
Q Consensus 54 ~l~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~l~~~Gl~~~ 103 (309)
.|++.|.++.+.+.+|+.++ ..|...++-+.-.+. ...+++|.+.|++.-
T Consensus 3 ~LT~rQ~~vL~~I~~~~~~~G~~Pt~rEIa~~~g~~S~~tv~~~L~~Le~kG~I~r 58 (65)
T PF01726_consen 3 ELTERQKEVLEFIREYIEENGYPPTVREIAEALGLKSTSTVQRHLKALERKGYIRR 58 (65)
T ss_dssp ---HHHHHHHHHHHHHHHHHSS---HHHHHHHHTSSSHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCChHHHHHHHHHHHHCcCccC
Confidence 47899999999999998875 456666665543333 346778888887753
No 52
>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. This entry represents a domain which forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1 [, ].
Probab=39.65 E-value=71 Score=25.37 Aligned_cols=44 Identities=14% Similarity=0.320 Sum_probs=25.2
Q ss_pred EeCCEEEEeeeeeeecCCCCCCEEEEEEEeCCCCCeEEEEEeCC-----CCCeeEeccc
Q 021675 192 KVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKD-----APGLTVTKIE 245 (309)
Q Consensus 192 ~~~~~~~lnG~K~~i~~a~~a~~~~V~a~~~~~~~~~~flV~~~-----~pGv~v~~~~ 245 (309)
.+.+.|.|+|.|+..-.. ..+....+.+.|+|.. .|.|++....
T Consensus 66 a~~~~WlV~Grrrg~f~~----------~~~~~~~~~l~LIPL~~G~L~lP~V~i~~~~ 114 (147)
T PF12584_consen 66 ADSDNWLVSGRRRGVFSL----------SDGSEHEIPLTLIPLRAGYLPLPKVEIRPYD 114 (147)
T ss_pred cCCCcEEEeccCcceEEe----------cCCCeEEEEEEEEecccceecCCEEEEEecc
Confidence 356679999988743211 1111123455666664 5678877665
No 53
>PF13051 DUF3912: Protein of unknown function (DUF3912)
Probab=32.53 E-value=76 Score=20.78 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=24.3
Q ss_pred EEEeeeeeeecCCCCCCEEEEEEEeCCCCCeEEEEE
Q 021675 197 WILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLV 232 (309)
Q Consensus 197 ~~lnG~K~~i~~a~~a~~~~V~a~~~~~~~~~~flV 232 (309)
|-|.|+|.+|-.+++-+-+-+.-+.+..-+.++++|
T Consensus 2 fdi~gqkayikdgp~rnrigivk~~e~q~~~~f~iv 37 (68)
T PF13051_consen 2 FDIVGQKAYIKDGPYRNRIGIVKKNEKQLESHFAIV 37 (68)
T ss_pred ccccccEeeeccCCccceeEEEecchhhcCCcEEEE
Confidence 457899999999998776665555443344455555
No 54
>PF05428 CRF-BP: Corticotropin-releasing factor binding protein (CRF-BP); InterPro: IPR008435 This family consists of several eukaryotic corticotropin-releasing factor binding proteins (CRF-BP or CRH-BP). Corticotropin-releasing hormone (CRH) plays multiple roles in vertebrate species. In mammals, it is the major hypothalamic releasing factor for pituitary adrenocorticotropin secretion, and is a neurotransmitter or neuromodulator at other sites in the central nervous system. In non-mammalian vertebrates, CRH not only acts as a neurotransmitter and hypophysiotropin, it also acts as a potent thyrotropin-releasing factor, allowing CRH to regulate both the adrenal and thyroid axes, especially in development. CRH-BP is thought to play an inhibitory role in which it binds CRH and other CRH-like ligands and prevents the activation of CRH receptors. There is however evidence that CRH-BP may also exhibit diverse extra and intracellular roles in a cell specific fashion and at specific times in development [].
Probab=23.28 E-value=30 Score=30.90 Aligned_cols=12 Identities=42% Similarity=0.684 Sum_probs=9.7
Q ss_pred CEEEEeeeeeee
Q 021675 195 GGWILEGQKRWI 206 (309)
Q Consensus 195 ~~~~lnG~K~~i 206 (309)
|||+|||+|+-.
T Consensus 114 DGW~LnGe~FPs 125 (311)
T PF05428_consen 114 DGWELNGEKFPS 125 (311)
T ss_pred eceEECccCCcC
Confidence 689999988743
No 55
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=20.48 E-value=3.8e+02 Score=21.16 Aligned_cols=46 Identities=20% Similarity=0.045 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHhhcC--ccHHHHHHhCCCCHHHHHHHHhCCcccc
Q 021675 58 EEQAVRMKVRECMEKEIA--PIMAEYWEKAEFPFHVIPKLGALRVAGG 103 (309)
Q Consensus 58 ~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~Gl~~~ 103 (309)
+....-+.+++|+.++.. ....+..+.-+.+.+.+.++.+.|=+.+
T Consensus 27 ~~e~~f~kV~~yLr~~p~~~ati~eV~e~tgVs~~~I~~~IreGRL~~ 74 (137)
T TIGR03826 27 EEEREFEKVYKFLRKHENRQATVSEIVEETGVSEKLILKFIREGRLQL 74 (137)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCcCHHHHHHHHHcCCeec
Confidence 345556899999998766 4556677788899999999988886655
Done!