Query 021676
Match_columns 309
No_of_seqs 168 out of 236
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 04:49:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021676.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021676hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14144 DOG1: Seed dormancy c 100.0 9E-37 1.9E-41 239.4 7.8 79 206-284 1-80 (80)
2 smart00338 BRLZ basic region l 98.7 5.2E-08 1.1E-12 72.6 6.7 44 123-166 3-46 (65)
3 PF00170 bZIP_1: bZIP transcri 98.6 9.5E-08 2.1E-12 71.1 5.8 36 123-158 3-38 (64)
4 PF07716 bZIP_2: Basic region 98.5 5E-07 1.1E-11 65.7 6.4 37 123-160 3-39 (54)
5 KOG3584 cAMP response element 97.7 6.3E-05 1.4E-09 72.8 5.4 34 123-156 289-322 (348)
6 PF03131 bZIP_Maf: bZIP Maf tr 96.3 0.0037 8E-08 50.0 3.2 35 124-158 29-63 (92)
7 KOG4343 bZIP transcription fac 95.0 0.041 8.9E-07 57.5 5.8 42 122-166 275-319 (655)
8 KOG0709 CREB/ATF family transc 94.5 0.037 8E-07 56.6 3.9 34 123-156 249-282 (472)
9 KOG0837 Transcriptional activa 93.0 0.21 4.5E-06 48.3 5.8 29 125-153 206-234 (279)
10 KOG4571 Activating transcripti 84.2 4.1 8.9E-05 39.9 7.5 49 122-170 223-283 (294)
11 KOG4005 Transcription factor X 80.6 14 0.0003 36.0 9.5 52 122-173 66-123 (292)
12 KOG3119 Basic region leucine z 76.5 6.3 0.00014 37.4 5.9 44 123-169 192-235 (269)
13 KOG3725 SH3 domain protein SH3 74.7 26 0.00056 34.7 9.6 24 122-145 150-179 (375)
14 PF13628 DUF4142: Domain of un 60.7 97 0.0021 25.7 9.7 94 141-237 30-131 (139)
15 COG3130 Rmf Ribosome modulatio 60.1 3.4 7.3E-05 31.4 0.3 15 262-276 34-48 (55)
16 PF09789 DUF2353: Uncharacteri 56.6 16 0.00035 36.2 4.4 46 122-167 100-151 (319)
17 cd07367 CarBb CarBb is the B s 49.5 42 0.00091 31.5 5.8 16 257-272 247-262 (268)
18 PF12999 PRKCSH-like: Glucosid 46.6 77 0.0017 29.1 6.8 46 126-171 125-175 (176)
19 PF11351 DUF3154: Protein of u 45.4 66 0.0014 27.3 5.9 12 268-279 57-68 (123)
20 PF11119 DUF2633: Protein of u 41.4 24 0.00051 27.4 2.3 18 286-303 6-23 (59)
21 PTZ00446 vacuolar sorting prot 41.1 64 0.0014 29.8 5.5 39 128-166 59-98 (191)
22 PRK10628 LigB family dioxygena 40.9 97 0.0021 29.5 6.8 47 157-203 126-178 (246)
23 PF06210 DUF1003: Protein of u 36.4 99 0.0021 26.0 5.5 19 127-146 52-70 (108)
24 cd07368 PhnC_Bs_like PhnC is a 36.0 1.1E+02 0.0025 28.9 6.5 47 157-203 161-212 (277)
25 PF14361 RsbRD_N: RsbT co-anta 34.6 64 0.0014 25.9 4.0 36 251-287 56-97 (105)
26 COG4867 Uncharacterized protei 34.5 2.5E+02 0.0054 30.0 9.0 120 124-251 226-358 (652)
27 PF09036 Bcr-Abl_Oligo: Bcr-Ab 34.5 28 0.00061 28.4 1.9 37 141-177 24-61 (79)
28 PF00589 Phage_integrase: Phag 33.7 19 0.00041 28.8 0.8 17 265-281 28-44 (173)
29 PF14362 DUF4407: Domain of un 33.6 4.1E+02 0.0089 25.0 14.0 27 144-170 137-163 (301)
30 PF10066 DUF2304: Uncharacteri 33.6 94 0.002 25.7 4.9 37 260-297 28-72 (115)
31 PRK06669 fliH flagellar assemb 33.6 3.5E+02 0.0075 25.4 9.2 48 160-216 111-158 (281)
32 PRK14563 ribosome modulation f 33.2 18 0.0004 27.7 0.6 15 259-274 32-46 (55)
33 KOG3759 Uncharacterized RUN do 33.1 2.1E+02 0.0045 30.7 8.2 101 138-269 141-246 (621)
34 PF11471 Sugarporin_N: Maltopo 32.7 33 0.00072 26.2 1.9 12 157-168 33-44 (60)
35 KOG0249 LAR-interacting protei 32.0 3.1E+02 0.0066 30.9 9.5 43 129-171 143-185 (916)
36 PRK11702 hypothetical protein; 31.7 22 0.00047 30.4 0.9 14 138-151 5-18 (108)
37 PF01350 Flavi_NS4A: Flaviviru 31.5 35 0.00076 30.5 2.1 15 261-275 85-99 (144)
38 cd07652 F-BAR_Rgd1 The F-BAR ( 31.5 4.3E+02 0.0092 24.5 9.6 46 127-172 95-148 (234)
39 PF13334 DUF4094: Domain of un 31.2 50 0.0011 27.2 2.9 21 148-171 75-95 (95)
40 PLN02796 D-glycerate 3-kinase 30.4 81 0.0018 31.6 4.7 43 197-242 278-320 (347)
41 PRK13372 pcmA protocatechuate 30.3 1.6E+02 0.0036 30.6 6.9 73 157-229 309-394 (444)
42 PF05227 CHASE3: CHASE3 domain 30.1 2.6E+02 0.0057 22.1 6.8 48 189-239 36-83 (138)
43 PF13586 DDE_Tnp_1_2: Transpos 29.3 25 0.00055 27.2 0.8 18 257-274 45-62 (88)
44 PF06692 MNSV_P7B: Melon necro 27.8 57 0.0012 25.4 2.5 19 291-309 15-33 (61)
45 KOG1656 Protein involved in gl 27.8 1.1E+02 0.0023 29.3 4.8 82 133-219 59-151 (221)
46 TIGR02298 HpaD_Fe 3,4-dihydrox 27.2 98 0.0021 29.5 4.5 49 154-202 153-210 (282)
47 PRK00239 rpsT 30S ribosomal pr 27.1 2.6E+02 0.0056 22.8 6.3 48 125-176 13-69 (88)
48 COG1422 Predicted membrane pro 27.1 91 0.002 29.4 4.1 42 124-167 78-119 (201)
49 KOG0243 Kinesin-like protein [ 26.9 5.5E+02 0.012 29.8 10.6 34 140-176 398-432 (1041)
50 PF06013 WXG100: Proteins of 1 26.6 2.4E+02 0.0052 20.1 11.1 25 188-212 44-68 (86)
51 PF07047 OPA3: Optic atrophy 3 26.0 2E+02 0.0043 24.7 5.7 40 131-170 94-133 (134)
52 KOG3385 V-SNARE [Intracellular 25.7 50 0.0011 28.8 2.0 18 291-308 99-116 (118)
53 PF03976 PPK2: Polyphosphate k 25.2 1.3E+02 0.0028 28.1 4.8 40 142-181 2-41 (228)
54 PRK07539 NADH dehydrogenase su 24.7 85 0.0019 27.2 3.3 34 270-303 35-68 (154)
55 PF04568 IATP: Mitochondrial A 24.7 2E+02 0.0043 24.2 5.3 34 134-167 57-94 (100)
56 PF01649 Ribosomal_S20p: Ribos 24.4 3.2E+02 0.0069 22.0 6.3 47 126-176 13-68 (84)
57 cd01189 INT_phiLC3_C phiLC3 ph 24.3 80 0.0017 25.7 2.9 16 266-281 29-44 (191)
58 PTZ00464 SNF-7-like protein; P 24.2 1.9E+02 0.0041 27.0 5.6 24 142-165 68-91 (211)
59 PHA00646 hypothetical protein 24.1 65 0.0014 25.5 2.2 24 285-308 35-58 (65)
60 cd07359 PCA_45_Doxase_B_like S 24.1 2.2E+02 0.0048 26.3 6.1 81 158-245 156-245 (271)
61 PLN03046 D-glycerate 3-kinase; 24.0 1E+02 0.0022 32.3 4.2 41 199-242 392-432 (460)
62 smart00742 Hr1 Rho effector or 23.0 1.6E+02 0.0034 21.6 4.0 37 125-167 21-57 (57)
63 PF06875 PRF: Plethodontid rec 22.8 4.7E+02 0.01 25.0 7.9 31 188-218 174-213 (214)
64 cd01182 INT_REC_C DNA breaking 22.5 52 0.0011 25.2 1.5 18 265-282 22-39 (162)
65 KOG3814 Signaling protein van 22.2 66 0.0014 33.6 2.5 31 257-287 142-172 (531)
66 cd07363 45_DOPA_Dioxygenase Th 21.8 1.2E+02 0.0027 28.1 4.0 30 156-185 136-165 (253)
67 PF13805 Pil1: Eisosome compon 21.7 1.9E+02 0.0041 28.3 5.3 20 156-175 165-184 (271)
68 cd07598 BAR_FAM92 The Bin/Amph 21.5 1.5E+02 0.0032 27.5 4.4 16 155-170 134-149 (211)
69 KOG4677 Golgi integral membran 21.4 1E+03 0.022 25.6 10.9 28 141-170 193-220 (554)
70 PLN02374 pyruvate dehydrogenas 21.3 4.5E+02 0.0098 27.0 8.1 78 182-261 329-408 (433)
71 KOG2878 Predicted kinase [Gene 21.3 1.3E+02 0.0028 29.3 4.0 42 197-241 214-255 (282)
72 PF15508 NAAA-beta: beta subun 20.6 3.6E+02 0.0079 21.5 6.0 53 197-249 15-80 (95)
73 TIGR02481 hemeryth_dom hemeryt 20.6 2.5E+02 0.0055 22.5 5.1 40 200-239 12-55 (126)
No 1
>PF14144 DOG1: Seed dormancy control
Probab=100.00 E-value=9e-37 Score=239.43 Aligned_cols=79 Identities=59% Similarity=1.019 Sum_probs=76.7
Q ss_pred hhHHHHHHHhhcCC-CChhHHHHHHHHHHhHHHHHHHHhhhhcccchhhccCCCCChHHHHHHHhcCCCchhHHHHHHHh
Q 021676 206 RHIVELRAAVNSHA-GDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKVSRLL 284 (309)
Q Consensus 206 r~i~ELRaAL~ah~-~D~eLr~LVdkvmsHY~eyfrlKs~AAkaDVfhv~SG~WkTPlER~FLWIGGFRPSeLlkLL~sL 284 (309)
|+|+|||+|+++|. +|++|+.||++||+||++||++|+.||++|||++|+|+|+||+|||||||||||||++|||||+.
T Consensus 1 ~~l~eLr~al~~~~~~~~~L~~lV~~~~~Hy~~y~~~K~~aa~~DV~~~~s~~W~sp~Er~flWiGG~RPS~~~~ll~s~ 80 (80)
T PF14144_consen 1 RQLNELRAALQSHADSDDELRSLVDKVMSHYDEYYRAKSAAAKADVFHLLSPPWKSPLERCFLWIGGWRPSELFKLLYSQ 80 (80)
T ss_pred CcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHhCCCCCCHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 58999999999998 89999999999999999999999999999999999999999999999999999999999999973
No 2
>smart00338 BRLZ basic region leucin zipper.
Probab=98.69 E-value=5.2e-08 Score=72.58 Aligned_cols=44 Identities=45% Similarity=0.570 Sum_probs=37.0
Q ss_pred cHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 021676 123 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQ 166 (309)
Q Consensus 123 d~k~lRRLAQNREAARKSRlRKKAYvQqLEssr~kL~qleqelq 166 (309)
|+|-.||+.+||+||++||.|||+|+++||.....|.....+|.
T Consensus 3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~ 46 (65)
T smart00338 3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLK 46 (65)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999986665555444444
No 3
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=98.60 E-value=9.5e-08 Score=71.12 Aligned_cols=36 Identities=50% Similarity=0.700 Sum_probs=30.0
Q ss_pred cHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHhHHHH
Q 021676 123 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKL 158 (309)
Q Consensus 123 d~k~lRRLAQNREAARKSRlRKKAYvQqLEssr~kL 158 (309)
..|..+|+.+||+|||+||.|||+|+++||..--.|
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L 38 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEEL 38 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 356789999999999999999999999999844433
No 4
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=98.47 E-value=5e-07 Score=65.69 Aligned_cols=37 Identities=46% Similarity=0.578 Sum_probs=32.0
Q ss_pred cHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHhHHHHHH
Q 021676 123 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQ 160 (309)
Q Consensus 123 d~k~lRRLAQNREAARKSRlRKKAYvQqLEssr~kL~q 160 (309)
|++..||. .||+||++||-|||.|+++||..-..|.+
T Consensus 3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~ 39 (54)
T PF07716_consen 3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEE 39 (54)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999 99999999999999999999995544443
No 5
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=97.66 E-value=6.3e-05 Score=72.84 Aligned_cols=34 Identities=47% Similarity=0.580 Sum_probs=29.9
Q ss_pred cHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHhHH
Q 021676 123 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRL 156 (309)
Q Consensus 123 d~k~lRRLAQNREAARKSRlRKKAYvQqLEssr~ 156 (309)
..|..=||-.||||||.+|-.||-||..||+-..
T Consensus 289 trKRevRLmKNREAARECRRKKKEYVKCLENRVA 322 (348)
T KOG3584|consen 289 TRKREVRLMKNREAARECRRKKKEYVKCLENRVA 322 (348)
T ss_pred hhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHH
Confidence 3467779999999999999999999999999543
No 6
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=96.30 E-value=0.0037 Score=49.98 Aligned_cols=35 Identities=34% Similarity=0.367 Sum_probs=30.9
Q ss_pred HHHHHHHHHhHHHHHHhhhhHHHHHHHHHHhHHHH
Q 021676 124 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKL 158 (309)
Q Consensus 124 ~k~lRRLAQNREAARKSRlRKKAYvQqLEssr~kL 158 (309)
-|-.||.-+||.||+.||-||+..+..||.....|
T Consensus 29 lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l 63 (92)
T PF03131_consen 29 LKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQL 63 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999866443
No 7
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=95.05 E-value=0.041 Score=57.46 Aligned_cols=42 Identities=43% Similarity=0.602 Sum_probs=34.1
Q ss_pred ccHHHHH---HHHHhHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 021676 122 GDQKTLR---RLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQ 166 (309)
Q Consensus 122 ~d~k~lR---RLAQNREAARKSRlRKKAYvQqLEssr~kL~qleqelq 166 (309)
.|+|+++ |+..|||-|--||-|||-|++-||. +|..|++|-+
T Consensus 275 ~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~---rLq~ll~Ene 319 (655)
T KOG4343|consen 275 SDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEA---RLQALLSENE 319 (655)
T ss_pred cCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 4777754 7889999999999999999999998 5555555544
No 8
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=94.50 E-value=0.037 Score=56.57 Aligned_cols=34 Identities=38% Similarity=0.497 Sum_probs=29.9
Q ss_pred cHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHhHH
Q 021676 123 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRL 156 (309)
Q Consensus 123 d~k~lRRLAQNREAARKSRlRKKAYvQqLEssr~ 156 (309)
+=|..||...|.+-|..||-|||-||.+||+-..
T Consensus 249 iLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~ 282 (472)
T KOG0709|consen 249 ILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVS 282 (472)
T ss_pred HHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhh
Confidence 3467799999999999999999999999997543
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=93.02 E-value=0.21 Score=48.29 Aligned_cols=29 Identities=45% Similarity=0.504 Sum_probs=24.1
Q ss_pred HHHHHHHHhHHHHHHhhhhHHHHHHHHHH
Q 021676 125 KTLRRLAQNREAARKSRLRKKAYVQQLES 153 (309)
Q Consensus 125 k~lRRLAQNREAARKSRlRKKAYvQqLEs 153 (309)
|..|.-+.|||||+|||-||=--+.+||.
T Consensus 206 kleRkrlrnreaa~Kcr~rkLdrisrLEd 234 (279)
T KOG0837|consen 206 KLERKRLRNREAASKCRKRKLDRISRLED 234 (279)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 44566678999999999999888888776
No 10
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=84.19 E-value=4.1 Score=39.94 Aligned_cols=49 Identities=31% Similarity=0.401 Sum_probs=38.0
Q ss_pred ccHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHh-----------HHHHHHHHHHHHHHhh
Q 021676 122 GDQKTLRRLAQNREA-ARKSRLRKKAYVQQLESS-----------RLKLTQLEQELQRARQ 170 (309)
Q Consensus 122 ~d~k~lRRLAQNREA-ARKSRlRKKAYvQqLEss-----------r~kL~qleqelqrarq 170 (309)
.+.|++||-+|+|.+ |-+=|-||||=-+.||.. |.++..||.|+++-||
T Consensus 223 ~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 223 TPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477999998887776 888899999988888653 3456778888887765
No 11
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=80.56 E-value=14 Score=35.95 Aligned_cols=52 Identities=37% Similarity=0.396 Sum_probs=37.9
Q ss_pred ccHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHhHHHHH------HHHHHHHHHhhcce
Q 021676 122 GDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLT------QLEQELQRARQQGI 173 (309)
Q Consensus 122 ~d~k~lRRLAQNREAARKSRlRKKAYvQqLEssr~kL~------qleqelqrarqQg~ 173 (309)
...|++||=-.||-||.-+|=||||-...+|-.-..|. |+|-++-|+...|+
T Consensus 66 ~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L 123 (292)
T KOG4005|consen 66 WEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESL 123 (292)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999998888886544333 44444445444443
No 12
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=76.52 E-value=6.3 Score=37.44 Aligned_cols=44 Identities=32% Similarity=0.388 Sum_probs=28.8
Q ss_pred cHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 021676 123 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRAR 169 (309)
Q Consensus 123 d~k~lRRLAQNREAARKSRlRKKAYvQqLEssr~kL~qleqelqrar 169 (309)
|++-..|...|=+|+||||...|.=- +.-..|...||.|.++-|
T Consensus 192 ~~~y~err~rNN~A~~kSR~~~k~~~---~e~~~r~~~leken~~lr 235 (269)
T KOG3119|consen 192 DPEYKERRRRNNEAVRKSRDKRKQKE---DEMAHRVAELEKENEALR 235 (269)
T ss_pred CHHHHHHHHhhhHHHHHhhhhHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 67778888999999999998766322 222345555555544333
No 13
>KOG3725 consensus SH3 domain protein SH3GLB [Signal transduction mechanisms]
Probab=74.69 E-value=26 Score=34.75 Aligned_cols=24 Identities=58% Similarity=0.807 Sum_probs=18.9
Q ss_pred ccHHHH---HHHHHhHH---HHHHhhhhHH
Q 021676 122 GDQKTL---RRLAQNRE---AARKSRLRKK 145 (309)
Q Consensus 122 ~d~k~l---RRLAQNRE---AARKSRlRKK 145 (309)
+|-||. |||-|||. -|-|+||.|-
T Consensus 150 GD~KTI~KERklLqnkRLDLDAcKsRLKKA 179 (375)
T KOG3725|consen 150 GDMKTIQKERKLLQNKRLDLDACKSRLKKA 179 (375)
T ss_pred ccHHHHHHHHHHHhhcccChHHHHHHHHHh
Confidence 466774 99999986 6889999763
No 14
>PF13628 DUF4142: Domain of unknown function (DUF4142)
Probab=60.74 E-value=97 Score=25.73 Aligned_cols=94 Identities=17% Similarity=0.264 Sum_probs=56.3
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHH-HHhhcceeec-cCCCCCC-----CCCCchhhhHHHHHHHHHHHHhhh-HHHHH
Q 021676 141 RLRKKAYVQQLESSRLKLTQLEQELQ-RARQQGIFIS-SSGDQSH-----SMSGNGAAAFDVEYSRWLEEHNRH-IVELR 212 (309)
Q Consensus 141 RlRKKAYvQqLEssr~kL~qleqelq-rarqQg~~~~-~~~~~~~-----~~~~~Ga~aF~~eY~rWleEq~r~-i~ELR 212 (309)
.=.=|+|-+++...-- ++.++|. -|.+.|+-+. ...+..+ ...+.....||..|-+.+..-++. +..+.
T Consensus 30 ~~~Vk~~A~~~~~dh~---~~~~~l~~la~~~~v~lp~~~~~~~~~~~l~~L~~~~g~~FD~~yl~~~i~~h~~~l~~~~ 106 (139)
T PF13628_consen 30 SPEVKAFAQQMVEDHT---QANQQLAALAAKKGVTLPPTALSAEQQAELDRLQKLSGSAFDRAYLDAQIKAHEKALALFE 106 (139)
T ss_pred CHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCCcccccccHhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345689988888554 4444553 4667888776 2211111 011223589999988887555555 55555
Q ss_pred HHhhcCCCChhHHHHHHHHHHhHHH
Q 021676 213 AAVNSHAGDTELRTIVDNVTSHFDE 237 (309)
Q Consensus 213 aAL~ah~~D~eLr~LVdkvmsHY~e 237 (309)
...-....|.+|+.++.+.+.-...
T Consensus 107 ~~~~~~~~~~~lk~~a~~~lp~l~~ 131 (139)
T PF13628_consen 107 KQLAASGKDPELKAFAQETLPVLEA 131 (139)
T ss_pred HHhhccCCCHHHHHHHHHHhHHHHH
Confidence 5355566788899888776544433
No 15
>COG3130 Rmf Ribosome modulation factor [Translation, ribosomal structure and biogenesis]
Probab=60.08 E-value=3.4 Score=31.44 Aligned_cols=15 Identities=27% Similarity=0.734 Sum_probs=10.4
Q ss_pred HHHHHHHhcCCCchh
Q 021676 262 AERCFMWIGGFRSSE 276 (309)
Q Consensus 262 lER~FLWIGGFRPSe 276 (309)
++---.|+||||--.
T Consensus 34 ~~~Rs~WLgGWRea~ 48 (55)
T COG3130 34 LNQRSQWLGGWREAM 48 (55)
T ss_pred chHHHHHHHHHHHHh
Confidence 344447999999654
No 16
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=56.58 E-value=16 Score=36.15 Aligned_cols=46 Identities=41% Similarity=0.553 Sum_probs=33.8
Q ss_pred ccHHHHHH-HHHhHHHH-----HHhhhhHHHHHHHHHHhHHHHHHHHHHHHH
Q 021676 122 GDQKTLRR-LAQNREAA-----RKSRLRKKAYVQQLESSRLKLTQLEQELQR 167 (309)
Q Consensus 122 ~d~k~lRR-LAQNREAA-----RKSRlRKKAYvQqLEssr~kL~qleqelqr 167 (309)
+|-|.||- +|..|--. |-.==.|.++|.|||..+-|..|||.+++.
T Consensus 100 GD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs 151 (319)
T PF09789_consen 100 GDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQS 151 (319)
T ss_pred chHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788886 66654322 221135679999999999999999999874
No 17
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=49.46 E-value=42 Score=31.54 Aligned_cols=16 Identities=25% Similarity=0.229 Sum_probs=12.5
Q ss_pred CCCChHHHHHHHhcCC
Q 021676 257 MWKTPAERCFMWIGGF 272 (309)
Q Consensus 257 ~WkTPlER~FLWIGGF 272 (309)
.+.-..|-+..||.|+
T Consensus 247 ~~v~~Ye~~~~w~~g~ 262 (268)
T cd07367 247 GEKVYYEPMPQWMTGM 262 (268)
T ss_pred ccEEEEEEhHHhhhhh
Confidence 5566778888999886
No 18
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=46.57 E-value=77 Score=29.11 Aligned_cols=46 Identities=28% Similarity=0.395 Sum_probs=25.7
Q ss_pred HHHHHHHhHHHHHHhhh-hHHHHHHHH----HHhHHHHHHHHHHHHHHhhc
Q 021676 126 TLRRLAQNREAARKSRL-RKKAYVQQL----ESSRLKLTQLEQELQRARQQ 171 (309)
Q Consensus 126 ~lRRLAQNREAARKSRl-RKKAYvQqL----Essr~kL~qleqelqrarqQ 171 (309)
..|...+.+....+--+ +|+.|+++- +.-..+|.+||+||+.+.++
T Consensus 125 ~~~~~~~~~~~~~~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~~e 175 (176)
T PF12999_consen 125 EYREELEEEEEIYKEGLKIRQELIEEAKKKREELEKKLEELEKEIQAAKQE 175 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444444333333222 233555443 44457889999999988764
No 19
>PF11351 DUF3154: Protein of unknown function (DUF3154); InterPro: IPR021497 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=45.35 E-value=66 Score=27.27 Aligned_cols=12 Identities=8% Similarity=0.138 Sum_probs=9.6
Q ss_pred HhcCCCchhHHH
Q 021676 268 WIGGFRSSELLK 279 (309)
Q Consensus 268 WIGGFRPSeLlk 279 (309)
|..||||...+-
T Consensus 57 fv~rwRP~~~~~ 68 (123)
T PF11351_consen 57 FVRRWRPALGWV 68 (123)
T ss_pred cccccccHHHHH
Confidence 889999986553
No 20
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=41.37 E-value=24 Score=27.44 Aligned_cols=18 Identities=39% Similarity=0.292 Sum_probs=15.8
Q ss_pred ccccchHHHHHHHHHHHH
Q 021676 286 AIVPTGIWLLFFFYFLFF 303 (309)
Q Consensus 286 Giq~~~~~~~~~~~~~~~ 303 (309)
..+||++.||++|.+||-
T Consensus 6 ~~~mtriVLLISfiIlfg 23 (59)
T PF11119_consen 6 NSRMTRIVLLISFIILFG 23 (59)
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 578999999999998885
No 21
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=41.09 E-value=64 Score=29.80 Aligned_cols=39 Identities=28% Similarity=0.313 Sum_probs=29.4
Q ss_pred HHHHHhHH-HHHHhhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 021676 128 RRLAQNRE-AARKSRLRKKAYVQQLESSRLKLTQLEQELQ 166 (309)
Q Consensus 128 RRLAQNRE-AARKSRlRKKAYvQqLEssr~kL~qleqelq 166 (309)
..+.+|+- +|...=-|||.|-+||+..-..+..|||-+-
T Consensus 59 ~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~ 98 (191)
T PTZ00446 59 QKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMI 98 (191)
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455553 5666666788999999999999999998754
No 22
>PRK10628 LigB family dioxygenase; Provisional
Probab=40.91 E-value=97 Score=29.53 Aligned_cols=47 Identities=15% Similarity=0.406 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhhcceeeccCCCCCCCC---C---CchhhhHHHHHHHHHHH
Q 021676 157 KLTQLEQELQRARQQGIFISSSGDQSHSM---S---GNGAAAFDVEYSRWLEE 203 (309)
Q Consensus 157 kL~qleqelqrarqQg~~~~~~~~~~~~~---~---~~Ga~aF~~eY~rWleE 203 (309)
+.-+|-+.|+.-|.+|+.|-+||...|.. . +......-.+|..|+.+
T Consensus 126 ~h~~lG~aL~~LR~~gvLIigSG~~~HNL~~~~~~~~~~~~~wa~~F~~wl~~ 178 (246)
T PRK10628 126 WHFEMGRKLAALRDEGIMLVASGNVVHNLRTVKWHGDSSPYPWAESFNQFVKA 178 (246)
T ss_pred HHHHHHHHHHhhccCCEEEEecCccccchhhhcccCCCCCchHHHHHHHHHHH
Confidence 45567777888899998777666666652 1 12233344677777753
No 23
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=36.37 E-value=99 Score=26.05 Aligned_cols=19 Identities=53% Similarity=0.688 Sum_probs=12.8
Q ss_pred HHHHHHhHHHHHHhhhhHHH
Q 021676 127 LRRLAQNREAARKSRLRKKA 146 (309)
Q Consensus 127 lRRLAQNREAARKSRlRKKA 146 (309)
+==++|||-++| .|+|-+-
T Consensus 52 ~IlmsQNRq~~~-dr~ra~~ 70 (108)
T PF06210_consen 52 LILMSQNRQAAR-DRLRAEL 70 (108)
T ss_pred HHHHHhhHhHHH-HHHHHHH
Confidence 344779998877 4666553
No 24
>cd07368 PhnC_Bs_like PhnC is a Class III Extradiol ring-cleavage dioxygenase involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. This subfamily is composed of Burkholderia sp. PhnC and similar poteins. PhnC is one of nine protein products encoded by the phn locus. These proteins are involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. PhnC is a member of the class III extradiol dioxygenase family, a group os enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=36.01 E-value=1.1e+02 Score=28.89 Aligned_cols=47 Identities=19% Similarity=0.249 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHH-----hhcceeeccCCCCCCCCCCchhhhHHHHHHHHHHH
Q 021676 157 KLTQLEQELQRA-----RQQGIFISSSGDQSHSMSGNGAAAFDVEYSRWLEE 203 (309)
Q Consensus 157 kL~qleqelqra-----rqQg~~~~~~~~~~~~~~~~Ga~aF~~eY~rWleE 203 (309)
+.-+|=+-|.+| |.+++.|-+||+-+|.....+....+.+|.+|+.+
T Consensus 161 ~~~~lG~al~~ai~~~~~d~rVliIaSG~LSH~l~~~~~~~~~~~fD~~~~~ 212 (277)
T cd07368 161 RAHELGRVIGAAVEAWQGDERVAIIGSGGISHWVGTAEMGAVNEGFDREIMK 212 (277)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEEcCcccCCCCCccccccCHHHHHHHHH
Confidence 444555555553 34777776677777765332222334555555543
No 25
>PF14361 RsbRD_N: RsbT co-antagonist protein rsbRD N-terminal domain
Probab=34.59 E-value=64 Score=25.93 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=24.6
Q ss_pred hhhccCCCCChHHHHHHHh------cCCCchhHHHHHHHhhcc
Q 021676 251 FHILSGMWKTPAERCFMWI------GGFRSSELLKVSRLLIAI 287 (309)
Q Consensus 251 fhv~SG~WkTPlER~FLWI------GGFRPSeLlkLL~sL~Gi 287 (309)
+.+..+.| .++-.+.-=| =||-||+....++.|-.+
T Consensus 56 ~d~~~~~~-~~l~~~L~~lsr~RA~Qgftpseta~fvf~LK~~ 97 (105)
T PF14361_consen 56 LDLAAPEW-EELREALEELSRIRAVQGFTPSETASFVFALKRP 97 (105)
T ss_pred hhccccch-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 56667777 5554444333 499999999988887653
No 26
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=34.53 E-value=2.5e+02 Score=30.02 Aligned_cols=120 Identities=24% Similarity=0.239 Sum_probs=66.4
Q ss_pred HHHHHHHHHhHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHH------HHHH------hhcceeeccCCCCCCCCCCchhh
Q 021676 124 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQE------LQRA------RQQGIFISSSGDQSHSMSGNGAA 191 (309)
Q Consensus 124 ~k~lRRLAQNREAARKSRlRKKAYvQqLEssr~kL~qleqe------lqra------rqQg~~~~~~~~~~~~~~~~Ga~ 191 (309)
...+--||- .+|+-||.+ --+-|+|++. |+||-|| |+++ .-||+--+-.-|.+.-+ +|-.
T Consensus 226 ~el~d~laA--R~aaaSrf~--nslsqeqr~E--LM~l~qqAfgsp~l~~~l~~l~~~lQG~rp~~dwDgs~qf--SgD~ 297 (652)
T COG4867 226 EELLDSLAA--RAAAASRFR--NSLSQEQRDE--LMALAQQAFGSPALMRALDRLDAHLQGARPGEDWDGSQQF--SGDN 297 (652)
T ss_pred HHHHHHHHH--HHHHHHHHh--hhhhHHHHHH--HHHHHHHHhCCHHHHHHHhhhhhhhhccCCCCCCCcccCc--CCCC
Confidence 344555554 367788888 5577888765 4444443 4432 23665433222222222 2444
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHh-hcCCCChhHHHHHHHHHHhHHHHHHHHhhhhcccch
Q 021676 192 AFDVEYSRWLEEHNRHIVELRAAV-NSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVF 251 (309)
Q Consensus 192 aF~~eY~rWleEq~r~i~ELRaAL-~ah~~D~eLr~LVdkvmsHY~eyfrlKs~AAkaDVf 251 (309)
.|++--+.=-+..--.+.+|-.+| +++..|.+|-.++...+..-..--+.....-++|+=
T Consensus 298 ~fg~g~gt~A~~d~aeleqLaEqLs~s~~~d~dlda~~rqLgD~aavda~tlaeleral~~ 358 (652)
T COG4867 298 PFGMGEGTQALADIAELEQLAEQLSQSYPGDVDLDALARQLGDQAAVDARTLAELERALVN 358 (652)
T ss_pred ccccchhhHHHhhhhhHHHHHHHHhccCccccchHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 454433332222222344455555 577778889999998888877766666666666654
No 27
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=34.50 E-value=28 Score=28.35 Aligned_cols=37 Identities=30% Similarity=0.485 Sum_probs=26.3
Q ss_pred hhhHHHH-HHHHHHhHHHHHHHHHHHHHHhhcceeecc
Q 021676 141 RLRKKAY-VQQLESSRLKLTQLEQELQRARQQGIFISS 177 (309)
Q Consensus 141 RlRKKAY-vQqLEssr~kL~qleqelqrarqQg~~~~~ 177 (309)
+||---+ -|.||.++..+..||||+..-|=.=||+.+
T Consensus 24 ~l~svgd~e~eLerCK~sirrLeqevnkERFrmiYLQT 61 (79)
T PF09036_consen 24 ELRSVGDIEQELERCKASIRRLEQEVNKERFRMIYLQT 61 (79)
T ss_dssp --SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3443333 377999999999999999887766666643
No 28
>PF00589 Phage_integrase: Phage integrase family; InterPro: IPR002104 Phage integrase proteins cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]. The catalytic site residues in CRE recombinase (P06956 from SWISSPROT) are Arg-173, His-289, Arg-292 and Tyr-324.; GO: 0003677 DNA binding, 0006310 DNA recombination, 0015074 DNA integration; PDB: 1A0P_A 1Z1G_B 1Z19_A 1AE9_A 1Z1B_A 1P7D_B 2A3V_C 1Q3V_E 1Q3U_A 1OUQ_F ....
Probab=33.69 E-value=19 Score=28.79 Aligned_cols=17 Identities=35% Similarity=0.639 Sum_probs=11.3
Q ss_pred HHHHhcCCCchhHHHHH
Q 021676 265 CFMWIGGFRSSELLKVS 281 (309)
Q Consensus 265 ~FLWIGGFRPSeLlkLL 281 (309)
.+++.+|+||+|++.|=
T Consensus 28 ~l~~~tG~R~~El~~l~ 44 (173)
T PF00589_consen 28 LLLLYTGLRPSELLRLR 44 (173)
T ss_dssp HHHHHHT--HHHHHT-B
T ss_pred HHHHHHccchhhhhhhh
Confidence 45778999999998763
No 29
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=33.61 E-value=4.1e+02 Score=24.96 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 021676 144 KKAYVQQLESSRLKLTQLEQELQRARQ 170 (309)
Q Consensus 144 KKAYvQqLEssr~kL~qleqelqrarq 170 (309)
.+++.+++..-+..+.++|+++.++++
T Consensus 137 ~~~~~~~i~~l~~~~~~~~~~~~~~~~ 163 (301)
T PF14362_consen 137 IARLDAEIAALQAEIDQLEKEIDRAQQ 163 (301)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666777888888887764
No 30
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=33.59 E-value=94 Score=25.67 Aligned_cols=37 Identities=14% Similarity=0.275 Sum_probs=26.9
Q ss_pred ChHHHHHHHhc--------CCCchhHHHHHHHhhccccchHHHHHH
Q 021676 260 TPAERCFMWIG--------GFRSSELLKVSRLLIAIVPTGIWLLFF 297 (309)
Q Consensus 260 TPlER~FLWIG--------GFRPSeLlkLL~sL~Giq~~~~~~~~~ 297 (309)
...+.+++|+. +..| .++..+..+.|+..+--.++++
T Consensus 28 l~~~~~l~Wl~~~i~~l~~~ifP-~~~~~vA~~lGi~~~~n~lf~~ 72 (115)
T PF10066_consen 28 LRLKYSLLWLVFSIILLILSIFP-NILDWVAKLLGIGRPPNLLFYL 72 (115)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHCCCchhHHHHHH
Confidence 45677888874 7899 5666889999998776544433
No 31
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=33.56 E-value=3.5e+02 Score=25.41 Aligned_cols=48 Identities=21% Similarity=0.194 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhcceeeccCCCCCCCCCCchhhhHHHHHHHHHHHHhhhHHHHHHHhh
Q 021676 160 QLEQELQRARQQGIFISSSGDQSHSMSGNGAAAFDVEYSRWLEEHNRHIVELRAAVN 216 (309)
Q Consensus 160 qleqelqrarqQg~~~~~~~~~~~~~~~~Ga~aF~~eY~rWleEq~r~i~ELRaAL~ 216 (309)
++|+..+.|+++|.=-|- ..|.......+..|+++....+..|.....
T Consensus 111 e~e~~~~~a~~eGy~eG~---------~~g~~e~~~e~~~~~~~l~~~~~~l~~~~~ 158 (281)
T PRK06669 111 ELERLIEEAKAEGYEEGY---------EKGREEGLEEVRELIEQLNKIIEKLIKKRE 158 (281)
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556778888743321 136667777888888877777766644433
No 32
>PRK14563 ribosome modulation factor; Provisional
Probab=33.24 E-value=18 Score=27.66 Aligned_cols=15 Identities=40% Similarity=0.975 Sum_probs=10.0
Q ss_pred CChHHHHHHHhcCCCc
Q 021676 259 KTPAERCFMWIGGFRS 274 (309)
Q Consensus 259 kTPlER~FLWIGGFRP 274 (309)
.++.-|. .||||||-
T Consensus 32 ~~~~~r~-~Wl~GWRe 46 (55)
T PRK14563 32 QTLDARS-QWLGGWRE 46 (55)
T ss_pred CCcHHHH-HHHHHHHH
Confidence 3444455 89999984
No 33
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=33.10 E-value=2.1e+02 Score=30.67 Aligned_cols=101 Identities=26% Similarity=0.312 Sum_probs=65.9
Q ss_pred HHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHhhcceeeccCCCCCCCCCCchhhhHHHHHHHHHHHHhhhHHHHHHHhhc
Q 021676 138 RKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQSHSMSGNGAAAFDVEYSRWLEEHNRHIVELRAAVNS 217 (309)
Q Consensus 138 RKSRlRKKAYvQqLEssr~kL~qleqelqrarqQg~~~~~~~~~~~~~~~~Ga~aF~~eY~rWleEq~r~i~ELRaAL~a 217 (309)
.|-+=|.|--|+||-+ +|..||+- |-+-| . |..... --++.|.-.+.|||.-++-
T Consensus 141 ekq~e~qkeLi~QLk~---Ql~dLE~~---AYe~G-----e----------g~LPq~----viLekQk~ilDeLr~Kl~l 195 (621)
T KOG3759|consen 141 EKQNERQKELIKQLKE---QLEDLERT---AYENG-----E----------GELPQT----VILEKQKAILDELREKLEL 195 (621)
T ss_pred hhhcchHHHHHHHHHH---HHHHHHHH---HHhcC-----C----------CcCchH----HHHHHHHHHHHHHHHHhhc
Confidence 3555677888888866 56666653 22222 1 222222 2367888889999999854
Q ss_pred C-----CCChhHHHHHHHHHHhHHHHHHHHhhhhcccchhhccCCCCChHHHHHHHh
Q 021676 218 H-----AGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWI 269 (309)
Q Consensus 218 h-----~~D~eLr~LVdkvmsHY~eyfrlKs~AAkaDVfhv~SG~WkTPlER~FLWI 269 (309)
. ++-.|||.-||.++..+-+-|++|..+...=- +=.|-+||+.-.|
T Consensus 196 nl~i~~lsteelr~qVD~A~~q~VnP~k~KeQLV~QLk------TQItDLErFInFl 246 (621)
T KOG3759|consen 196 NLDIDKLSTEELRRQVDDALKQLVNPFKEKEQLVDQLK------TQITDLERFINFL 246 (621)
T ss_pred cCCcccccHHHHHHHHHHHHHHHhChHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 3 44689999999999999999999985533211 1225667765554
No 34
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=32.74 E-value=33 Score=26.20 Aligned_cols=12 Identities=58% Similarity=0.731 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 021676 157 KLTQLEQELQRA 168 (309)
Q Consensus 157 kL~qleqelqra 168 (309)
||.+|||.|+.|
T Consensus 33 RLa~LE~rL~~a 44 (60)
T PF11471_consen 33 RLAALEQRLQAA 44 (60)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 35
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=32.01 E-value=3.1e+02 Score=30.91 Aligned_cols=43 Identities=33% Similarity=0.356 Sum_probs=31.0
Q ss_pred HHHHhHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHhhc
Q 021676 129 RLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQ 171 (309)
Q Consensus 129 RLAQNREAARKSRlRKKAYvQqLEssr~kL~qleqelqrarqQ 171 (309)
-|+|.=+|++|-+.+----..-++.-+..+..+.+||+||||-
T Consensus 143 el~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqr 185 (916)
T KOG0249|consen 143 ELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQR 185 (916)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556677777766555666666667888899999999974
No 36
>PRK11702 hypothetical protein; Provisional
Probab=31.72 E-value=22 Score=30.40 Aligned_cols=14 Identities=43% Similarity=0.695 Sum_probs=11.2
Q ss_pred HHhhhhHHHHHHHH
Q 021676 138 RKSRLRKKAYVQQL 151 (309)
Q Consensus 138 RKSRlRKKAYvQqL 151 (309)
|..|||||=||-..
T Consensus 5 RsRRlRKKL~v~EF 18 (108)
T PRK11702 5 RSRRLRKKMHIDEF 18 (108)
T ss_pred hhHHHHhhhhhHhh
Confidence 67899999998543
No 37
>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part
Probab=31.48 E-value=35 Score=30.50 Aligned_cols=15 Identities=20% Similarity=0.747 Sum_probs=12.0
Q ss_pred hHHHHHHHhcCCCch
Q 021676 261 PAERCFMWIGGFRSS 275 (309)
Q Consensus 261 PlER~FLWIGGFRPS 275 (309)
.+=-+++|+||+-|.
T Consensus 85 ~~~~~llw~ggv~~~ 99 (144)
T PF01350_consen 85 AVAGYLLWMGGVPPG 99 (144)
T ss_pred HHHHHHHHhcCCcHH
Confidence 345678999999887
No 38
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=31.47 E-value=4.3e+02 Score=24.50 Aligned_cols=46 Identities=24% Similarity=0.351 Sum_probs=33.9
Q ss_pred HHHHHHhHHHHHHh--------hhhHHHHHHHHHHhHHHHHHHHHHHHHHhhcc
Q 021676 127 LRRLAQNREAARKS--------RLRKKAYVQQLESSRLKLTQLEQELQRARQQG 172 (309)
Q Consensus 127 lRRLAQNREAARKS--------RlRKKAYvQqLEssr~kL~qleqelqrarqQg 172 (309)
|-.|+.+=|..||+ --+...-+.+||.++.+-.++-+|+++||.+.
T Consensus 95 L~~l~~~~e~~RK~~ke~~~k~~k~~~~a~~~leKAK~~Y~~~c~e~Ekar~~~ 148 (234)
T cd07652 95 LSSLAKTVEKSRKSIKETGKRAEKKVQDAEAAAEKAKARYDSLADDLERVKTGD 148 (234)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 44555555555553 12344677889999999999999999999864
No 39
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=31.18 E-value=50 Score=27.21 Aligned_cols=21 Identities=38% Similarity=0.626 Sum_probs=17.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhc
Q 021676 148 VQQLESSRLKLTQLEQELQRARQQ 171 (309)
Q Consensus 148 vQqLEssr~kL~qleqelqrarqQ 171 (309)
||.|+. +++-||.||..||.+
T Consensus 75 Iq~LdK---tIS~LEMELAaARa~ 95 (95)
T PF13334_consen 75 IQSLDK---TISSLEMELAAARAE 95 (95)
T ss_pred HHHHHH---HHHHHHHHHHHHhcC
Confidence 677776 899999999999974
No 40
>PLN02796 D-glycerate 3-kinase
Probab=30.44 E-value=81 Score=31.58 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=33.7
Q ss_pred HHHHHHHHhhhHHHHHHHhhcCCCChhHHHHHHHHHHhHHHHHHHH
Q 021676 197 YSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLK 242 (309)
Q Consensus 197 Y~rWleEq~r~i~ELRaAL~ah~~D~eLr~LVdkvmsHY~eyfrlK 242 (309)
--+|-.||++.|. +.-...++|++++..|+.+|=-|+.|+..-
T Consensus 278 v~~WR~qQE~~l~---~~~~~gMsde~v~~FV~~~mP~y~~y~~~l 320 (347)
T PLN02796 278 VYEWRLQAEIAMR---AKGKPGMSDEEVADFVSRYMPAYKAYLPGL 320 (347)
T ss_pred HHHHHHHHHHHHH---HhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4579988887654 333456899999999999999888888654
No 41
>PRK13372 pcmA protocatechuate 4,5-dioxygenase; Provisional
Probab=30.31 E-value=1.6e+02 Score=30.59 Aligned_cols=73 Identities=19% Similarity=0.200 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhh------cceeeccCCCCCCCCCCchhhhHHHHHHHHHHHHhh-hHHHH---HHH---hhcCCCChh
Q 021676 157 KLTQLEQELQRARQ------QGIFISSSGDQSHSMSGNGAAAFDVEYSRWLEEHNR-HIVEL---RAA---VNSHAGDTE 223 (309)
Q Consensus 157 kL~qleqelqrarq------Qg~~~~~~~~~~~~~~~~Ga~aF~~eY~rWleEq~r-~i~EL---RaA---L~ah~~D~e 223 (309)
+.-+|-+-|.++|. +++.|-++|.-+|...+.....-..+|.+|+.+.-. ....| ..+ -.+|....|
T Consensus 309 R~~~LG~AL~~lres~~~D~erVlIIGSGGLSHnL~~~~~g~in~eFD~~~ld~L~~D~e~L~~~~~~~~~~~aG~~g~E 388 (444)
T PRK13372 309 RCYELGQAIRRAIDKWDADPLNVQIWGTGGMSHQLQGPRAGLINEEFDNAFLDHLIADPEAAAEIPHIDYVDEAGSEGIE 388 (444)
T ss_pred HHHHHHHHHHHHHhhcccccCCEEEEecCcccCCCCCCCCccchHHHHHHHHHHHHhCHHHHHcCcccHHHHHcCCchHH
Confidence 45567888888888 898776666666765443222234555555543222 23333 221 134555667
Q ss_pred HHHHHH
Q 021676 224 LRTIVD 229 (309)
Q Consensus 224 Lr~LVd 229 (309)
|+.+|-
T Consensus 389 l~~Wiv 394 (444)
T PRK13372 389 LVDWLI 394 (444)
T ss_pred HHHHHH
Confidence 776553
No 42
>PF05227 CHASE3: CHASE3 domain; InterPro: IPR007891 CHASE3 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE3 domains are found in histidine kinases, adenylate cyclases, methyl-accepting chemotaxis proteins and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE3 domains are not known at this time [].; PDB: 3VA9_A.
Probab=30.11 E-value=2.6e+02 Score=22.12 Aligned_cols=48 Identities=19% Similarity=0.283 Sum_probs=32.5
Q ss_pred hhhhHHHHHHHHHHHHhhhHHHHHHHhhcCCCChhHHHHHHHHHHhHHHHH
Q 021676 189 GAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIF 239 (309)
Q Consensus 189 Ga~aF~~eY~rWleEq~r~i~ELRaAL~ah~~D~eLr~LVdkvmsHY~eyf 239 (309)
|...|-..|......-...+.+|+..+.. +.+.+..++.+-.-++.++
T Consensus 36 gd~~~l~~y~~~~~~~~~~l~~L~~l~~~---~p~q~~~l~~l~~~~~~~~ 83 (138)
T PF05227_consen 36 GDPEFLEPYQEARARLEKALAQLRQLVQD---NPEQQERLDQLEELIDQWR 83 (138)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHTTT----HHHHHHHHHHHHHHHHHH
T ss_pred CCHhhhchHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHH
Confidence 57789999999999999999999977642 3344445555555444444
No 43
>PF13586 DDE_Tnp_1_2: Transposase DDE domain
Probab=29.27 E-value=25 Score=27.19 Aligned_cols=18 Identities=33% Similarity=0.649 Sum_probs=14.6
Q ss_pred CCCChHHHHHHHhcCCCc
Q 021676 257 MWKTPAERCFMWIGGFRS 274 (309)
Q Consensus 257 ~WkTPlER~FLWIGGFRP 274 (309)
+.+.-.||+|-||.+||-
T Consensus 45 ~~Rw~VEr~f~wlk~~Rr 62 (88)
T PF13586_consen 45 KRRWVVERTFAWLKRFRR 62 (88)
T ss_pred ccceehhhhhHHHHHcCc
Confidence 444469999999999985
No 44
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=27.84 E-value=57 Score=25.42 Aligned_cols=19 Identities=32% Similarity=0.749 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHhhcC
Q 021676 291 GIWLLFFFYFLFFIFYFFG 309 (309)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~ 309 (309)
+.+|..+.-|+||..|+||
T Consensus 15 ~~lLiliis~~f~lI~~l~ 33 (61)
T PF06692_consen 15 GPLLILIISFVFFLITSLG 33 (61)
T ss_pred hHHHHHHHHHHHHHHhhhc
Confidence 4567777788888888876
No 45
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.77 E-value=1.1e+02 Score=29.26 Aligned_cols=82 Identities=20% Similarity=0.220 Sum_probs=42.9
Q ss_pred hHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHhhcceeeccCCCCCCCCCCchhhhHHH-----------HHHHHH
Q 021676 133 NREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQSHSMSGNGAAAFDV-----------EYSRWL 201 (309)
Q Consensus 133 NREAARKSRlRKKAYvQqLEssr~kL~qleqelqrarqQg~~~~~~~~~~~~~~~~Ga~aF~~-----------eY~rWl 201 (309)
|..+|-.+=-|||.|-|||+.----|+.+|+.+..-- +.-..+- . --.-+.|+.+... ..-.=+
T Consensus 59 NKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alE--nA~~n~E--v-l~~m~~~A~AmK~~h~~mDiDkVdd~MdeI 133 (221)
T KOG1656|consen 59 NKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALE--NANTNTE--V-LDAMGSAAKAMKAAHKNMDIDKVDDLMDEI 133 (221)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--cccccHH--H-HHHHHHHHHHHHHHHhccChhHHHHHHHHH
Confidence 3334444445899999999877777777777643211 1000000 0 0001124433332 222335
Q ss_pred HHHhhhHHHHHHHhhcCC
Q 021676 202 EEHNRHIVELRAAVNSHA 219 (309)
Q Consensus 202 eEq~r~i~ELRaAL~ah~ 219 (309)
.||.....|+-.|+....
T Consensus 134 ~eQqe~a~eIseAiS~Pv 151 (221)
T KOG1656|consen 134 AEQQEVAEEISEAISAPV 151 (221)
T ss_pred HHHHHHHHHHHHHHhCcc
Confidence 677777888888876554
No 46
>TIGR02298 HpaD_Fe 3,4-dihydroxyphenylacetate 2,3-dioxygenase. This enzyme catalyzes the ring-opening step in the degradation of 4-hydroxyphenylacetate.
Probab=27.25 E-value=98 Score=29.45 Aligned_cols=49 Identities=18% Similarity=0.327 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHH---hhcceeeccCCCCCCCCCC------chhhhHHHHHHHHHH
Q 021676 154 SRLKLTQLEQELQRA---RQQGIFISSSGDQSHSMSG------NGAAAFDVEYSRWLE 202 (309)
Q Consensus 154 sr~kL~qleqelqra---rqQg~~~~~~~~~~~~~~~------~Ga~aF~~eY~rWle 202 (309)
+..++-+|-+-|.++ |.+++.+-+||+-+|.... .|......+|.+|++
T Consensus 153 ~~~~~~~lG~al~~~i~~~~~rV~iIaSG~lSH~L~~~~~~~p~g~~~~a~~f~~~~D 210 (282)
T TIGR02298 153 DIEESRALGEAIRKAIEQSDGRVAVLASGSLSHRFWDNKDLAPEGMTTIASEFNRQVD 210 (282)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEEecccceecCcccCCCcccCCchhhHHHHHHH
Confidence 444556777777777 7788877777787776542 233444556667776
No 47
>PRK00239 rpsT 30S ribosomal protein S20; Reviewed
Probab=27.11 E-value=2.6e+02 Score=22.80 Aligned_cols=48 Identities=23% Similarity=0.468 Sum_probs=33.3
Q ss_pred HHHHHHHHhHHHHHHhhhhHHHHHHHHHH---------hHHHHHHHHHHHHHHhhcceeec
Q 021676 125 KTLRRLAQNREAARKSRLRKKAYVQQLES---------SRLKLTQLEQELQRARQQGIFIS 176 (309)
Q Consensus 125 k~lRRLAQNREAARKSRlRKKAYvQqLEs---------sr~kL~qleqelqrarqQg~~~~ 176 (309)
...+|=+.|| ++||++| -||...+. ....|......|++|-..|++--
T Consensus 13 ~~~krr~~N~--~~kS~~k--T~iKk~~~ai~~~~~~~a~~~~~~a~s~iDka~~KgiiHk 69 (88)
T PRK00239 13 QNEKRRLRNK--SRKSRVR--TAIKKVEAAIAAGDKEAAEEALKAAQSKIDKAASKGVIHK 69 (88)
T ss_pred HHHHHHHHHH--HHHHHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHCCCcch
Confidence 3444445554 7899998 45544443 35568888999999999998764
No 48
>COG1422 Predicted membrane protein [Function unknown]
Probab=27.11 E-value=91 Score=29.35 Aligned_cols=42 Identities=21% Similarity=0.378 Sum_probs=29.3
Q ss_pred HHHHHHHHHhHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHH
Q 021676 124 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQR 167 (309)
Q Consensus 124 ~k~lRRLAQNREAARKSRlRKKAYvQqLEssr~kL~qleqelqr 167 (309)
+|+.+-+-+-+++|+|++=-|| +.+|++-|++..+...||=.
T Consensus 78 qk~m~efq~e~~eA~~~~d~~~--lkkLq~~qmem~~~Q~elmk 119 (201)
T COG1422 78 QKMMKEFQKEFREAQESGDMKK--LKKLQEKQMEMMDDQRELMK 119 (201)
T ss_pred HHHHHHHHHHHHHHHHhCCHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 4555555677788888776544 77888888888777777654
No 49
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=26.89 E-value=5.5e+02 Score=29.77 Aligned_cols=34 Identities=32% Similarity=0.649 Sum_probs=25.9
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHh-hcceeec
Q 021676 140 SRLRKKAYVQQLESSRLKLTQLEQELQRAR-QQGIFIS 176 (309)
Q Consensus 140 SRlRKKAYvQqLEssr~kL~qleqelqrar-qQg~~~~ 176 (309)
..|-||+|+..|=. -+.-|.++|..|| .+|+||+
T Consensus 398 Qkl~K~~llKd~~~---EIerLK~dl~AaReKnGvyis 432 (1041)
T KOG0243|consen 398 QKLMKKTLLKDLYE---EIERLKRDLAAAREKNGVYIS 432 (1041)
T ss_pred hHHHHHHHHHHHHH---HHHHHHHHHHHhHhhCceEec
Confidence 35778888877654 4455678999999 5999996
No 50
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=26.61 E-value=2.4e+02 Score=20.07 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=20.5
Q ss_pred chhhhHHHHHHHHHHHHhhhHHHHH
Q 021676 188 NGAAAFDVEYSRWLEEHNRHIVELR 212 (309)
Q Consensus 188 ~Ga~aF~~eY~rWleEq~r~i~ELR 212 (309)
.++.+|...|.+|-....+.+..|.
T Consensus 44 ~a~~af~~~~~~~~~~~~~~~~~L~ 68 (86)
T PF06013_consen 44 EAADAFQDKFEEWNQAFRQLNEALE 68 (86)
T ss_dssp STSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999988777766663
No 51
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=25.99 E-value=2e+02 Score=24.66 Aligned_cols=40 Identities=18% Similarity=0.361 Sum_probs=29.3
Q ss_pred HHhHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 021676 131 AQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQ 170 (309)
Q Consensus 131 AQNREAARKSRlRKKAYvQqLEssr~kL~qleqelqrarq 170 (309)
....-.+||++.|....-|.||+-+.++..|++++++-.+
T Consensus 94 ~E~~Rs~~ke~~Ke~~~~~~l~~L~~~i~~L~~~~~~~~~ 133 (134)
T PF07047_consen 94 YEYWRSARKEAKKEEELQERLEELEERIEELEEQVEKQQE 133 (134)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3556667777777777778888888888888888776443
No 52
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.70 E-value=50 Score=28.81 Aligned_cols=18 Identities=28% Similarity=0.765 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHhhc
Q 021676 291 GIWLLFFFYFLFFIFYFF 308 (309)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~ 308 (309)
-.|+.||+.+.|||+|.+
T Consensus 99 ~~~m~~f~lV~~fi~~~~ 116 (118)
T KOG3385|consen 99 LCWMAVFSLVAFFILWVW 116 (118)
T ss_pred HHHHHHHHHHHHHHhhee
Confidence 357778888888887754
No 53
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=25.21 E-value=1.3e+02 Score=28.15 Aligned_cols=40 Identities=28% Similarity=0.390 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHhhcceeeccCCCC
Q 021676 142 LRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQ 181 (309)
Q Consensus 142 lRKKAYvQqLEssr~kL~qleqelqrarqQg~~~~~~~~~ 181 (309)
|=|+.|-++|+.-+.+|.+|.+.+..++..-+++-.|-|.
T Consensus 2 l~k~ey~~~l~~L~~~L~~lQ~~l~~~~~~vlIl~eG~d~ 41 (228)
T PF03976_consen 2 LDKEEYKAELEELRERLAELQRRLREAGIPVLILFEGWDA 41 (228)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEESTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecccc
Confidence 4588999999999999999999999988774444444443
No 54
>PRK07539 NADH dehydrogenase subunit E; Validated
Probab=24.73 E-value=85 Score=27.21 Aligned_cols=34 Identities=15% Similarity=0.285 Sum_probs=31.9
Q ss_pred cCCCchhHHHHHHHhhccccchHHHHHHHHHHHH
Q 021676 270 GGFRSSELLKVSRLLIAIVPTGIWLLFFFYFLFF 303 (309)
Q Consensus 270 GGFRPSeLlkLL~sL~Giq~~~~~~~~~~~~~~~ 303 (309)
-||=|-+.+..+...+|+.++.+.-++.||-.|.
T Consensus 35 ~g~ip~~~~~~iA~~l~v~~~~v~~v~tFY~~f~ 68 (154)
T PRK07539 35 RGWVPDEAIEAVADYLGMPAIDVEEVATFYSMIF 68 (154)
T ss_pred hCCCCHHHHHHHHHHhCcCHHHHHHHHHHHhhhC
Confidence 5899999999999999999999999999998774
No 55
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=24.68 E-value=2e+02 Score=24.19 Aligned_cols=34 Identities=29% Similarity=0.390 Sum_probs=23.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHhHHHHHH----HHHHHHH
Q 021676 134 REAARKSRLRKKAYVQQLESSRLKLTQ----LEQELQR 167 (309)
Q Consensus 134 REAARKSRlRKKAYvQqLEssr~kL~q----leqelqr 167 (309)
||+|+-..-=+|-=-+||+.-|-||.+ -+++|++
T Consensus 57 rE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~ 94 (100)
T PF04568_consen 57 REAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDE 94 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887776666666777777777776 5555543
No 56
>PF01649 Ribosomal_S20p: Ribosomal protein S20; InterPro: IPR002583 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family consists of bacterial (and chloroplast) examples of the ribosomal small subunit protein S20. Bacterial ribosomal protein S20 forms part of the 30S ribosomal subunit, and interacts with 16S rRNA.; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1I94_T 1FJG_T 4DH9_T 3KNJ_T 3TVG_W 3UYF_W 3V28_T 3KIS_t 3HUY_T 1HNX_T ....
Probab=24.37 E-value=3.2e+02 Score=22.00 Aligned_cols=47 Identities=28% Similarity=0.469 Sum_probs=32.7
Q ss_pred HHHHHHHhHHHHHHhhhhHHHHHHHHHH---------hHHHHHHHHHHHHHHhhcceeec
Q 021676 126 TLRRLAQNREAARKSRLRKKAYVQQLES---------SRLKLTQLEQELQRARQQGIFIS 176 (309)
Q Consensus 126 ~lRRLAQNREAARKSRlRKKAYvQqLEs---------sr~kL~qleqelqrarqQg~~~~ 176 (309)
..+|=+.|| ++||++| .||.+.+. ....|.+....|++|-..|++--
T Consensus 13 ~~krr~~Nr--~~kS~~r--T~iKk~~~ai~~~~~~~a~~~l~~a~s~iDka~~kgiihk 68 (84)
T PF01649_consen 13 NEKRRARNR--SRKSRVR--TAIKKFREAIEAGDKEEAKELLRKAYSAIDKAAKKGIIHK 68 (84)
T ss_dssp HHHHHHHHH--HHHHHHH--HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHSSSTT
T ss_pred HHHHHHHHH--HHHHHHH--HHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHcCCcch
Confidence 344444444 7899998 67766543 44567788888999999998743
No 57
>cd01189 INT_phiLC3_C phiLC3 phage and phage-related integrases, site-specific recombinases, DNA breaking-rejoining enzymes, C-terminal catalytic domain. This CD includes various bacterial (mainly gram positive) and phage integrases, including those similar to Lactococcus phage phiLC3, TPW22, Tuc2009, BK5-T, A2, bIL285, bIL286, bIL311, ul36 and phi g1e; Staphylococcus aureus phage phi13 and phi42; Oenococcus oeni phage fOg44; Streptococcus thermophilus phage O1205 and Sfi21; and Streptococcus pyogenes phage T12 and T270.
Probab=24.30 E-value=80 Score=25.71 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=13.2
Q ss_pred HHHhcCCCchhHHHHH
Q 021676 266 FMWIGGFRSSELLKVS 281 (309)
Q Consensus 266 FLWIGGFRPSeLlkLL 281 (309)
+++.+|.||+|++.|-
T Consensus 29 l~~~~G~R~~Ei~~l~ 44 (191)
T cd01189 29 LLAYTGLRIGEALALT 44 (191)
T ss_pred HHHHhccHHHHHhhce
Confidence 4666999999999874
No 58
>PTZ00464 SNF-7-like protein; Provisional
Probab=24.19 E-value=1.9e+02 Score=26.98 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHH
Q 021676 142 LRKKAYVQQLESSRLKLTQLEQEL 165 (309)
Q Consensus 142 lRKKAYvQqLEssr~kL~qleqel 165 (309)
-|||.|-+||+.-...+..|||-+
T Consensus 68 K~KK~~E~ql~~l~~q~~nleq~~ 91 (211)
T PTZ00464 68 QQKRMYQNQQDMMMQQQFNMDQLQ 91 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367789998877666666666653
No 59
>PHA00646 hypothetical protein
Probab=24.14 E-value=65 Score=25.47 Aligned_cols=24 Identities=29% Similarity=0.723 Sum_probs=17.4
Q ss_pred hccccchHHHHHHHHHHHHHHhhc
Q 021676 285 IAIVPTGIWLLFFFYFLFFIFYFF 308 (309)
Q Consensus 285 ~Giq~~~~~~~~~~~~~~~~~~~~ 308 (309)
.-+-|-||||.++|-.-|+|+..|
T Consensus 35 Y~~~MVgIWlvI~Fl~Wf~i~mvf 58 (65)
T PHA00646 35 YLTLMVGIWLVILFLTWFSLWMVF 58 (65)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHH
Confidence 345578999999887777776543
No 60
>cd07359 PCA_45_Doxase_B_like Subunit B of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and simlar enzymes. This subfamily of class III extradiol dioxygenases consists of a number of proteins with known enzymatic activities: Protocatechuate (PCA) 4,5-dioxygenase (LigAB), 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), 3-O-Methylgallate Dioxygenase, 2-aminophenol 1,6-dioxygenase, as well as proteins without any known enzymatic activity. These proteins play essential roles in the degradation of aromatic compounds by catalyzing the incorporation of both atoms of molecular oxygen into their preferred substrates. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model repres
Probab=24.13 E-value=2.2e+02 Score=26.29 Aligned_cols=81 Identities=22% Similarity=0.213 Sum_probs=39.8
Q ss_pred HHHHHHHHHHH-----hhcceeeccCCCCCCCCCCch----hhhHHHHHHHHHHHHhhhHHHHHHHhhcCCCChhHHHHH
Q 021676 158 LTQLEQELQRA-----RQQGIFISSSGDQSHSMSGNG----AAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIV 228 (309)
Q Consensus 158 L~qleqelqra-----rqQg~~~~~~~~~~~~~~~~G----a~aF~~eY~rWleEq~r~i~ELRaAL~ah~~D~eLr~LV 228 (309)
+-+|-+-|.++ |.+++.|-+|||-+|...... +..||...-.++++.. +.+|... .+.++..-.
T Consensus 156 ~~~lG~aL~~~i~~~~~d~rV~iIaSGdlSH~l~~~~~g~~~~~fD~~~~~~l~~~d--~~~l~~~-----~~~~~~~~a 228 (271)
T cd07359 156 CYALGRALRRAIESFPGDLRVAVLGTGGLSHWPGGPRHGEINEEFDREFLDLLERGD--LEALLKA-----TTEETLEEA 228 (271)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEecCcccCCCCCccccccCHHHHHHHHHHHHhCC--HHHHHhc-----CHHHHHHHc
Confidence 33444555544 456776666778777644322 4566666665555432 3332211 122333333
Q ss_pred HHHHHhHHHHHHHHhhh
Q 021676 229 DNVTSHFDEIFRLKGIA 245 (309)
Q Consensus 229 dkvmsHY~eyfrlKs~A 245 (309)
..+-.||..++-+-+++
T Consensus 229 g~~~~e~~~~~~~~GA~ 245 (271)
T cd07359 229 GNGGHEILNWIAAAGAL 245 (271)
T ss_pred CCCcHHHHHHHHHHHhh
Confidence 33445555555555544
No 61
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=23.99 E-value=1e+02 Score=32.26 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=30.6
Q ss_pred HHHHHHhhhHHHHHHHhhcCCCChhHHHHHHHHHHhHHHHHHHH
Q 021676 199 RWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLK 242 (309)
Q Consensus 199 rWleEq~r~i~ELRaAL~ah~~D~eLr~LVdkvmsHY~eyfrlK 242 (309)
+|-.||++.| |+.-...++|++++..|+..|=.|+.|+..-
T Consensus 392 ~WRlqQE~kL---r~~gg~GMsdeqV~~FV~~YmPaY~~y~~~L 432 (460)
T PLN03046 392 QWRLQAEIAM---RADGKPGMSDEEVMDFVSRYLPAYKAYLPTL 432 (460)
T ss_pred HHHHHHHHHH---HHcCCCCCCHHHHHHHHHHhhhHHHHHHHHH
Confidence 4666666544 4333346889999999999999999998765
No 62
>smart00742 Hr1 Rho effector or protein kinase C-related kinase homology region 1 homologues. Alpha-helical domain found in vertebrate PRK1 and yeast PKC1 protein kinases C. The HR1 in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Also called RBD - Rho-binding domain
Probab=23.03 E-value=1.6e+02 Score=21.61 Aligned_cols=37 Identities=30% Similarity=0.401 Sum_probs=25.5
Q ss_pred HHHHHHHHhHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHH
Q 021676 125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQR 167 (309)
Q Consensus 125 k~lRRLAQNREAARKSRlRKKAYvQqLEssr~kL~qleqelqr 167 (309)
+-++++.+|.+ |++.+ =-++|..|+.||..|+.+|++
T Consensus 21 e~m~~~~~~~~---k~~~~---a~~~l~es~~ki~~L~~~L~~ 57 (57)
T smart00742 21 ENMRKLTSNDR---KVLSE---AQSMLRESNQKLDLLKEELEK 57 (57)
T ss_pred HHHHHHHcCcH---HHHHH---HHHHHHHHHHHHHHHHHHhhC
Confidence 44677777743 33332 236788999999999999864
No 63
>PF06875 PRF: Plethodontid receptivity factor PRF; InterPro: IPR010681 This family consists of several plethodontid receptivity factor (PRF) proteins which seem to be specific to Plethodon jordani (Jordan's salamander). PRF is a courtship pheromone produced by males increase female receptivity [].
Probab=22.76 E-value=4.7e+02 Score=25.00 Aligned_cols=31 Identities=26% Similarity=0.505 Sum_probs=24.8
Q ss_pred chhhhHH---------HHHHHHHHHHhhhHHHHHHHhhcC
Q 021676 188 NGAAAFD---------VEYSRWLEEHNRHIVELRAAVNSH 218 (309)
Q Consensus 188 ~Ga~aF~---------~eY~rWleEq~r~i~ELRaAL~ah 218 (309)
.|...|. .||..|++.-.|.++-|++--+.|
T Consensus 174 ~g~~~F~kK~rGyvVc~eY~~Wv~rT~rDf~~L~~Ky~~~ 213 (214)
T PF06875_consen 174 GGSAVFEKKCRGYVVCREYKEWVWRTKRDFEFLAKKYQGQ 213 (214)
T ss_pred CccHHHHHHcccceeHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 3666676 589999999999999998765543
No 64
>cd01182 INT_REC_C DNA breaking-rejoining enzymes, intergrase/recombinases, C-terminal catalytic domain. The tyrosine recombinase/integrase family share the same catalytic domain containing six conserved active site residues. The best-studied members of this diverse family include the bacteriophage lambda integrase, the bacteriophage P1 Cre recombinase, the yeast Flp recombinase and the bacterial XerD/C recombinases. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many intergrase/recombinases also have N-terminal domains, which show little sequence or structure similarity.
Probab=22.55 E-value=52 Score=25.17 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=15.0
Q ss_pred HHHHhcCCCchhHHHHHH
Q 021676 265 CFMWIGGFRSSELLKVSR 282 (309)
Q Consensus 265 ~FLWIGGFRPSeLlkLL~ 282 (309)
.++..+|.||+|+.+|-.
T Consensus 22 ~l~~~~G~R~~ei~~l~~ 39 (162)
T cd01182 22 LLLLYTGLRVSELLALRW 39 (162)
T ss_pred HHHHHhCCCHHHHhhheh
Confidence 457779999999998865
No 65
>KOG3814 consensus Signaling protein van gogh/strabismus [Signal transduction mechanisms]
Probab=22.22 E-value=66 Score=33.56 Aligned_cols=31 Identities=32% Similarity=0.445 Sum_probs=27.0
Q ss_pred CCCChHHHHHHHhcCCCchhHHHHHHHhhcc
Q 021676 257 MWKTPAERCFMWIGGFRSSELLKVSRLLIAI 287 (309)
Q Consensus 257 ~WkTPlER~FLWIGGFRPSeLlkLL~sL~Gi 287 (309)
.|+.++|-|=-=.-|.==|+++|+|.-+.|+
T Consensus 142 ~~r~~l~~C~~~CeGllismA~kll~L~ig~ 172 (531)
T KOG3814|consen 142 LWRMELEPCGTDCEGLLISMAFKLLILLIGI 172 (531)
T ss_pred hhhccccccccccchhhHHHHHHHHHHHHHH
Confidence 7999999997777788889999999998886
No 66
>cd07363 45_DOPA_Dioxygenase The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine. This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated ca
Probab=21.76 E-value=1.2e+02 Score=28.06 Aligned_cols=30 Identities=27% Similarity=0.470 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhhcceeeccCCCCCCCC
Q 021676 156 LKLTQLEQELQRARQQGIFISSSGDQSHSM 185 (309)
Q Consensus 156 ~kL~qleqelqrarqQg~~~~~~~~~~~~~ 185 (309)
.+.-+|-+-|.++|.+++.|.+||+.+|..
T Consensus 136 ~~~~~lG~aL~~l~~~~v~ii~SG~lsH~l 165 (253)
T cd07363 136 AEHYALGRALAPLRDEGVLIIGSGSSVHNL 165 (253)
T ss_pred HHHHHHHHHHHhhhhCCEEEEecCcceech
Confidence 455566777777777788777777777763
No 67
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=21.67 E-value=1.9e+02 Score=28.32 Aligned_cols=20 Identities=45% Similarity=0.522 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhhcceee
Q 021676 156 LKLTQLEQELQRARQQGIFI 175 (309)
Q Consensus 156 ~kL~qleqelqrarqQg~~~ 175 (309)
-||..|||||.||-+.-+..
T Consensus 165 ~kl~~LeqELvraEae~lva 184 (271)
T PF13805_consen 165 PKLVVLEQELVRAEAENLVA 184 (271)
T ss_dssp TTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhHH
Confidence 48999999999998876543
No 68
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.52 E-value=1.5e+02 Score=27.49 Aligned_cols=16 Identities=44% Similarity=0.507 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHhh
Q 021676 155 RLKLTQLEQELQRARQ 170 (309)
Q Consensus 155 r~kL~qleqelqrarq 170 (309)
+.++.|.|.+|++|+.
T Consensus 134 ~~~i~eaE~~l~~a~~ 149 (211)
T cd07598 134 RQIISQAESELQKASV 149 (211)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4567799999999986
No 69
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=21.42 E-value=1e+03 Score=25.56 Aligned_cols=28 Identities=39% Similarity=0.432 Sum_probs=18.0
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 021676 141 RLRKKAYVQQLESSRLKLTQLEQELQRARQ 170 (309)
Q Consensus 141 RlRKKAYvQqLEssr~kL~qleqelqrarq 170 (309)
||+|+. |..||-+ .-|.-|-++|+-|++
T Consensus 193 ~ll~~R-ve~le~~-Sal~~lq~~L~la~~ 220 (554)
T KOG4677|consen 193 RLLKGR-VESLERF-SALRSLQDKLQLAEE 220 (554)
T ss_pred HHHHhh-hHHHHHH-HHHHHHHHHHHHHHH
Confidence 555543 6777766 356677777776664
No 70
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=21.28 E-value=4.5e+02 Score=26.97 Aligned_cols=78 Identities=14% Similarity=0.258 Sum_probs=52.2
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHhhhHHHHHHHhhcC--CCChhHHHHHHHHHHhHHHHHHHHhhhhcccchhhccCCCC
Q 021676 182 SHSMSGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSH--AGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWK 259 (309)
Q Consensus 182 ~~~~~~~Ga~aF~~eY~rWleEq~r~i~ELRaAL~ah--~~D~eLr~LVdkvmsHY~eyfrlKs~AAkaDVfhv~SG~Wk 259 (309)
+|+.+.+..-.=..++++|.. +.-|..+|..|.+. ++++++..+-+.+-...++-++.=...-.-++-.++...|.
T Consensus 329 GHs~~D~~~YR~~~e~~~~~~--~DPi~~~~~~L~~~gi~te~e~~~i~~~~~~~v~~a~~~A~~~p~P~~~~~~~~vy~ 406 (433)
T PLN02374 329 GHSLADPDELRDPAEKAHYAA--RDPIAALKKYLIENGLATEAELKAIEKKIDEVVEDAVEFADASPLPPRSQLLENVFA 406 (433)
T ss_pred CcCCCCccccCCHHHHHHHHc--CCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccc
Confidence 455443333333468999984 34488888888543 57889999999999988887764333445566666777776
Q ss_pred Ch
Q 021676 260 TP 261 (309)
Q Consensus 260 TP 261 (309)
.+
T Consensus 407 ~~ 408 (433)
T PLN02374 407 DP 408 (433)
T ss_pred CC
Confidence 54
No 71
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=21.28 E-value=1.3e+02 Score=29.34 Aligned_cols=42 Identities=17% Similarity=0.278 Sum_probs=34.5
Q ss_pred HHHHHHHHhhhHHHHHHHhhcCCCChhHHHHHHHHHHhHHHHHHH
Q 021676 197 YSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRL 241 (309)
Q Consensus 197 Y~rWleEq~r~i~ELRaAL~ah~~D~eLr~LVdkvmsHY~eyfrl 241 (309)
.-||.-+|+ .+||+-.+..++|+|+...|++.|-.|..|..-
T Consensus 214 VYrWRLQqE---hal~~~~~kGMsDEeV~~FV~rYmP~Yk~YL~t 255 (282)
T KOG2878|consen 214 VYRWRLQQE---HALRQDGQKGMSDEEVNDFVSRYMPAYKAYLPT 255 (282)
T ss_pred hhhhhHHHH---HHHHHhhccCCCHHHHHHHHHhhhhHHHhhhhh
Confidence 357876554 578888899999999999999999999988653
No 72
>PF15508 NAAA-beta: beta subunit of N-acylethanolamine-hydrolyzing acid amidase
Probab=20.63 E-value=3.6e+02 Score=21.45 Aligned_cols=53 Identities=23% Similarity=0.375 Sum_probs=30.3
Q ss_pred HHHHHHHHhhh---HHHHHHHhhcC----CCChhHHHHHHHHHHhHHHHH------HHHhhhhccc
Q 021676 197 YSRWLEEHNRH---IVELRAAVNSH----AGDTELRTIVDNVTSHFDEIF------RLKGIASKAD 249 (309)
Q Consensus 197 Y~rWleEq~r~---i~ELRaAL~ah----~~D~eLr~LVdkvmsHY~eyf------rlKs~AAkaD 249 (309)
++||.+--... +.+|...+... .+...+-.+|++++.+...++ ++|+.|...+
T Consensus 15 ~eRw~~i~~~~k~~i~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~EirGIA~~~g 80 (95)
T PF15508_consen 15 EERWVQIAKDYKDEIRELIEVLKDLLQSFVPSGKVLDFVDKLLPHLLRYLPQPYAEEIRGIAKAAG 80 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 67887544433 44444443332 223468888888888866655 5666554443
No 73
>TIGR02481 hemeryth_dom hemerythrin-like metal-binding domain. This model describes both members of the hemerythrin (TIGR00058) family of marine invertebrates and a broader collection of bacterial and archaeal homologs. Many of the latter group are multidomain proteins with signal-transducing domains such as the GGDEF diguanylate cyclase domain (TIGR00254, pfam00990) and methyl-accepting chemotaxis protein signaling domain (pfam00015). Most hemerythrins are oxygen-carriers with a bound non-heme iron, but at least one example is a cadmium-binding protein, apparently with a role in sequestering toxic metals rather than in binding oxygen. Patterns of conserved residues suggest that all prokaryotic instances of this domain bind iron or another heavy metal, but the exact function is unknown. Not surprisingly, the prokaryote with the most instances of this domain is Magnetococcus sp. MC-1, a magnetotactic bacterium.
Probab=20.58 E-value=2.5e+02 Score=22.51 Aligned_cols=40 Identities=25% Similarity=0.442 Sum_probs=22.6
Q ss_pred HHHHHhhh----HHHHHHHhhcCCCChhHHHHHHHHHHhHHHHH
Q 021676 200 WLEEHNRH----IVELRAAVNSHAGDTELRTIVDNVTSHFDEIF 239 (309)
Q Consensus 200 WleEq~r~----i~ELRaAL~ah~~D~eLr~LVdkvmsHY~eyf 239 (309)
.++++++. +++|..|+....++.++..+++.+..+-...|
T Consensus 12 ~ID~qH~~l~~~in~l~~a~~~~~~~~~~~~~l~~L~~y~~~HF 55 (126)
T TIGR02481 12 EIDAQHKELFELINELYDALSAGNGKDELKEILDELIDYTENHF 55 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 35555554 45555666555555566666666655555555
Done!