Query 021676
Match_columns 309
No_of_seqs 168 out of 236
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 07:39:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021676.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021676hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.0 6.6E-10 2.3E-14 81.2 5.8 44 125-171 1-44 (55)
2 2dgc_A Protein (GCN4); basic d 98.5 1.1E-07 3.8E-12 71.1 5.9 48 123-170 7-58 (63)
3 2wt7_A Proto-oncogene protein 98.2 2.5E-06 8.5E-11 63.3 6.8 41 125-165 2-42 (63)
4 1jnm_A Proto-oncogene C-JUN; B 98.2 2E-06 6.8E-11 63.4 6.0 36 125-160 1-36 (62)
5 1t2k_D Cyclic-AMP-dependent tr 98.2 2.6E-06 9E-11 62.5 6.0 35 126-160 2-36 (61)
6 1gd2_E Transcription factor PA 97.9 2.5E-05 8.7E-10 59.8 6.1 38 126-166 9-46 (70)
7 1ci6_A Transcription factor AT 97.0 0.00065 2.2E-08 50.4 4.6 39 125-163 2-40 (63)
8 1gu4_A CAAT/enhancer binding p 96.1 0.019 6.5E-07 44.7 7.5 47 123-169 13-70 (78)
9 3a5t_A Transcription factor MA 94.7 0.024 8.1E-07 46.6 3.9 32 124-155 36-67 (107)
10 1hjb_A Ccaat/enhancer binding 92.9 0.35 1.2E-05 38.3 7.3 47 123-169 13-70 (87)
11 2wt7_B Transcription factor MA 86.3 2.2 7.7E-05 34.0 7.0 45 123-167 25-73 (90)
12 1skn_P DNA-binding domain of S 79.5 0.82 2.8E-05 36.9 2.0 30 123-152 60-89 (92)
13 2ksd_A Aerobic respiration con 75.9 0.14 4.8E-06 42.6 -3.5 30 147-176 76-105 (115)
14 2er8_A Regulatory protein Leu3 62.1 4.4 0.00015 28.9 2.3 23 144-169 47-69 (72)
15 1zme_C Proline utilization tra 58.4 7.6 0.00026 27.3 3.0 24 144-170 42-65 (70)
16 3he4_B Synzip5; heterodimeric 55.0 15 0.00051 25.8 3.9 25 145-169 9-33 (46)
17 2c9l_Y EB1, zebra, BZLF1 trans 53.3 27 0.00092 26.1 5.3 22 131-155 7-28 (63)
18 1hwt_C Protein (heme activator 52.6 6.6 0.00023 28.4 1.9 27 139-168 51-77 (81)
19 1k1f_A Breakpoint cluster regi 50.5 7.2 0.00025 30.1 1.9 29 149-177 33-61 (72)
20 4abm_A Charged multivesicular 50.1 26 0.0009 26.8 5.0 35 132-166 42-76 (79)
21 3plt_A Sphingolipid long chain 46.5 27 0.00093 32.0 5.4 43 132-174 100-149 (234)
22 2kz5_A Transcription factor NF 45.2 4.4 0.00015 32.6 -0.0 21 125-145 66-86 (91)
23 3frh_A 16S rRNA methylase; met 44.7 26 0.00087 32.3 4.9 80 120-240 19-98 (253)
24 4i0x_B ESAT-6-like protein MAB 43.0 1E+02 0.0036 23.2 8.7 56 146-215 25-83 (103)
25 1s16_A Topoisomerase IV subuni 41.5 7 0.00024 37.3 0.7 15 131-145 376-390 (390)
26 3e1r_A Centrosomal protein of 40.3 36 0.0012 25.3 4.2 34 134-170 16-55 (58)
27 1pyi_A Protein (pyrimidine pat 35.9 30 0.001 25.7 3.3 22 145-169 47-68 (96)
28 3coq_A Regulatory protein GAL4 35.7 27 0.00093 25.4 3.0 23 144-169 43-65 (89)
29 3ukm_A Potassium channel subfa 32.3 2.3E+02 0.0079 26.0 9.3 94 189-294 27-139 (280)
30 1js9_A Coat protein, capsid pr 31.9 9.7 0.00033 33.8 0.0 15 131-145 12-26 (189)
31 1umd_A E1-alpha, 2-OXO acid de 30.4 3.3E+02 0.011 25.2 10.5 66 194-261 285-352 (367)
32 2pw6_A Uncharacterized protein 27.6 43 0.0015 30.3 3.5 48 157-204 151-204 (271)
33 1hlo_A Protein (transcription 26.3 42 0.0014 25.0 2.7 23 146-171 57-79 (80)
34 3mov_A Lamin-B1; LMNB1, B-type 24.8 72 0.0024 25.1 3.9 27 146-172 34-60 (95)
35 3tnu_A Keratin, type I cytoske 23.2 81 0.0028 25.5 4.0 27 145-171 73-99 (131)
36 2rdd_B UPF0092 membrane protei 23.0 43 0.0015 22.0 1.9 8 301-308 12-19 (37)
37 3tnu_B Keratin, type II cytosk 22.3 81 0.0028 25.4 3.9 28 145-172 71-98 (129)
38 2jrm_A Ribosome modulation fac 21.3 20 0.0007 27.1 0.1 16 260-276 33-48 (65)
39 3m9b_A Proteasome-associated A 21.1 1.8E+02 0.0063 26.8 6.3 32 146-177 72-103 (251)
40 1gk4_A Vimentin; intermediate 20.7 2.2E+02 0.0076 21.4 5.8 26 146-171 23-48 (84)
41 1d66_A Protein (GAL4); protein 20.6 30 0.001 23.7 0.8 15 145-162 51-65 (66)
42 1gmj_A ATPase inhibitor; coile 20.6 1.9E+02 0.0064 22.8 5.4 26 142-168 45-70 (84)
43 1w85_A Pyruvate dehydrogenase 20.5 4E+02 0.014 24.8 8.8 66 194-261 284-351 (368)
44 1x8y_A Lamin A/C; structural p 20.4 98 0.0034 23.6 3.8 26 146-171 25-50 (86)
45 3nkh_A Integrase; alpha-fold, 20.1 87 0.003 25.6 3.7 16 266-281 63-78 (244)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=98.97 E-value=6.6e-10 Score=81.19 Aligned_cols=44 Identities=43% Similarity=0.587 Sum_probs=36.7
Q ss_pred HHHHHHHHhHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHhhc
Q 021676 125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQ 171 (309)
Q Consensus 125 k~lRRLAQNREAARKSRlRKKAYvQqLEssr~kL~qleqelqrarqQ 171 (309)
|-.||+..|||+|+.||.|||+||+.||. ++.+||.|-..-+.|
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~---~v~~L~~eN~~L~~~ 44 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLEN---RVAVLENQNKTLIEE 44 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 35799999999999999999999999999 567777776655543
No 2
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=98.54 E-value=1.1e-07 Score=71.10 Aligned_cols=48 Identities=38% Similarity=0.461 Sum_probs=33.7
Q ss_pred cHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHhHHHH----HHHHHHHHHHhh
Q 021676 123 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKL----TQLEQELQRARQ 170 (309)
Q Consensus 123 d~k~lRRLAQNREAARKSRlRKKAYvQqLEssr~kL----~qleqelqrarq 170 (309)
+++..|+-++||||||+||.||++|+..||.....| ..|+.|+.+-|+
T Consensus 7 ~d~~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 7 SDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566668899999999999999999999865444 345555555554
No 3
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=98.23 E-value=2.5e-06 Score=63.26 Aligned_cols=41 Identities=27% Similarity=0.317 Sum_probs=34.0
Q ss_pred HHHHHHHHhHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHH
Q 021676 125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 165 (309)
Q Consensus 125 k~lRRLAQNREAARKSRlRKKAYvQqLEssr~kL~qleqel 165 (309)
|-.||+-.||+||+|||.|||.|++.||...-.|..-..+|
T Consensus 2 kr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L 42 (63)
T 2wt7_A 2 KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSAL 42 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999766665543333
No 4
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=98.22 E-value=2e-06 Score=63.39 Aligned_cols=36 Identities=39% Similarity=0.386 Sum_probs=30.8
Q ss_pred HHHHHHHHhHHHHHHhhhhHHHHHHHHHHhHHHHHH
Q 021676 125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQ 160 (309)
Q Consensus 125 k~lRRLAQNREAARKSRlRKKAYvQqLEssr~kL~q 160 (309)
|..||...||+||+|||.|||.|+++||.....|..
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~ 36 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKA 36 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999986655544
No 5
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=98.19 E-value=2.6e-06 Score=62.47 Aligned_cols=35 Identities=37% Similarity=0.509 Sum_probs=30.3
Q ss_pred HHHHHHHhHHHHHHhhhhHHHHHHHHHHhHHHHHH
Q 021676 126 TLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQ 160 (309)
Q Consensus 126 ~lRRLAQNREAARKSRlRKKAYvQqLEssr~kL~q 160 (309)
-.+|+..||+||.|||.|||.|+++||...-.|..
T Consensus 2 R~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~ 36 (61)
T 1t2k_D 2 RRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSS 36 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999986555543
No 6
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=97.86 E-value=2.5e-05 Score=59.81 Aligned_cols=38 Identities=34% Similarity=0.432 Sum_probs=31.9
Q ss_pred HHHHHHHhHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 021676 126 TLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQ 166 (309)
Q Consensus 126 ~lRRLAQNREAARKSRlRKKAYvQqLEssr~kL~qleqelq 166 (309)
..+|-||||+|+|-.|-||++||+.||. |+.+||.+.+
T Consensus 9 ~~kR~~qNR~AQRafReRK~~~i~~LE~---~v~~le~~~~ 46 (70)
T 1gd2_E 9 SSKRKAQNRAAQRAFRKRKEDHLKALET---QVVTLKELHS 46 (70)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 4688999999999999999999999998 5566665543
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=97.04 E-value=0.00065 Score=50.42 Aligned_cols=39 Identities=28% Similarity=0.417 Sum_probs=27.2
Q ss_pred HHHHHHHHhHHHHHHhhhhHHHHHHHHHHhHHHHHHHHH
Q 021676 125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQ 163 (309)
Q Consensus 125 k~lRRLAQNREAARKSRlRKKAYvQqLEssr~kL~qleq 163 (309)
|-.|+.-+||.||+++|.|||.+++.||..--.|.+-..
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~ 40 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNE 40 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788899999999999999999999986555544333
No 8
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=96.14 E-value=0.019 Score=44.65 Aligned_cols=47 Identities=32% Similarity=0.308 Sum_probs=36.5
Q ss_pred cHHHHHHHHHhHHHHHHhhhhHHHHHHHHHH---------hH--HHHHHHHHHHHHHh
Q 021676 123 DQKTLRRLAQNREAARKSRLRKKAYVQQLES---------SR--LKLTQLEQELQRAR 169 (309)
Q Consensus 123 d~k~lRRLAQNREAARKSRlRKKAYvQqLEs---------sr--~kL~qleqelqrar 169 (309)
|++-..|-..|.+||+|||-.+|.=.++++. .+ .++.+|++|+..-|
T Consensus 13 d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777889999999999999998888743 32 45667777777665
No 9
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=94.74 E-value=0.024 Score=46.59 Aligned_cols=32 Identities=28% Similarity=0.384 Sum_probs=29.0
Q ss_pred HHHHHHHHHhHHHHHHhhhhHHHHHHHHHHhH
Q 021676 124 QKTLRRLAQNREAARKSRLRKKAYVQQLESSR 155 (309)
Q Consensus 124 ~k~lRRLAQNREAARKSRlRKKAYvQqLEssr 155 (309)
-|-.||--.||++|+.||.||.+.+..||...
T Consensus 36 lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~ 67 (107)
T 3a5t_A 36 LKQRRRTLKNRGYAASCRVKRVTQKEELEKQK 67 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 37789999999999999999999999999754
No 10
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=92.88 E-value=0.35 Score=38.25 Aligned_cols=47 Identities=30% Similarity=0.285 Sum_probs=33.8
Q ss_pred cHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHh-----------HHHHHHHHHHHHHHh
Q 021676 123 DQKTLRRLAQNREAARKSRLRKKAYVQQLESS-----------RLKLTQLEQELQRAR 169 (309)
Q Consensus 123 d~k~lRRLAQNREAARKSRlRKKAYvQqLEss-----------r~kL~qleqelqrar 169 (309)
|++-.+|-..|.+||||||-.+|.=.++++.- +.++.+|+.|++.-|
T Consensus 13 d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888999999999999999877766432 234455555555544
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=86.33 E-value=2.2 Score=33.99 Aligned_cols=45 Identities=31% Similarity=0.435 Sum_probs=34.9
Q ss_pred cHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHhHHH----HHHHHHHHHH
Q 021676 123 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLK----LTQLEQELQR 167 (309)
Q Consensus 123 d~k~lRRLAQNREAARKSRlRKKAYvQqLEssr~k----L~qleqelqr 167 (309)
.-|-.||--.||-+|..||-||-.-+..||..... +.+|.+|+.+
T Consensus 25 ~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~ 73 (90)
T 2wt7_B 25 RLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSR 73 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44778999999999999999999999999986543 3445555443
No 12
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=79.48 E-value=0.82 Score=36.88 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=23.5
Q ss_pred cHHHHHHHHHhHHHHHHhhhhHHHHHHHHH
Q 021676 123 DQKTLRRLAQNREAARKSRLRKKAYVQQLE 152 (309)
Q Consensus 123 d~k~lRRLAQNREAARKSRlRKKAYvQqLE 152 (309)
.-+-.||=..||.||+++|-||..=+..||
T Consensus 60 ~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~ 89 (92)
T 1skn_P 60 LIRKIRRRGKNKVAARTCRQRRTDRHDKMS 89 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Confidence 346679999999999999999987555443
No 13
>2ksd_A Aerobic respiration control sensor protein ARCB; methods development, histidine kinase receptor, membrane domain, two-helical hairpin; NMR {Escherichia coli}
Probab=75.89 E-value=0.14 Score=42.65 Aligned_cols=30 Identities=37% Similarity=0.585 Sum_probs=12.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhcceeec
Q 021676 147 YVQQLESSRLKLTQLEQELQRARQQGIFIS 176 (309)
Q Consensus 147 YvQqLEssr~kL~qleqelqrarqQg~~~~ 176 (309)
=|+|||.||.+|+++=-+|+++|+|..+..
T Consensus 76 vVe~LE~SR~~Ls~~V~~Le~~r~~d~~ln 105 (115)
T 2ksd_A 76 VVEQLEESRQRLSRLVQKLEEMRERDLSLN 105 (115)
T ss_dssp HHHCCCSSCCCCCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999999999987764
No 14
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=62.12 E-value=4.4 Score=28.91 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHh
Q 021676 144 KKAYVQQLESSRLKLTQLEQELQRAR 169 (309)
Q Consensus 144 KKAYvQqLEssr~kL~qleqelqrar 169 (309)
++.||++||. ++.+||..|+..+
T Consensus 47 ~~~~~~~Le~---ri~~Le~~l~~l~ 69 (72)
T 2er8_A 47 KRARNEAIEK---RFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHCC-
T ss_pred cHHHHHHHHH---HHHHHHHHHHHHh
Confidence 4589999997 8899999887654
No 15
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=58.45 E-value=7.6 Score=27.30 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 021676 144 KKAYVQQLESSRLKLTQLEQELQRARQ 170 (309)
Q Consensus 144 KKAYvQqLEssr~kL~qleqelqrarq 170 (309)
++.|+++||. ++.+||+.|...+.
T Consensus 42 ~~~~~~~L~~---ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 42 STKYLQQLQK---DLNDKTEENNRLKA 65 (70)
T ss_dssp EHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3568988887 78888888876553
No 16
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=55.04 E-value=15 Score=25.79 Aligned_cols=25 Identities=36% Similarity=0.608 Sum_probs=20.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHh
Q 021676 145 KAYVQQLESSRLKLTQLEQELQRAR 169 (309)
Q Consensus 145 KAYvQqLEssr~kL~qleqelqrar 169 (309)
|-|||.||.....|..|..-|.-|.
T Consensus 9 knyiqeleernaelknlkehlkfak 33 (46)
T 3he4_B 9 KNYIQELEERNAELKNLKEHLKFAK 33 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHhHHHHHHHHH
Confidence 6899999998888888877776554
No 17
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=53.28 E-value=27 Score=26.05 Aligned_cols=22 Identities=55% Similarity=0.551 Sum_probs=16.0
Q ss_pred HHhHHHHHHhhhhHHHHHHHHHHhH
Q 021676 131 AQNREAARKSRLRKKAYVQQLESSR 155 (309)
Q Consensus 131 AQNREAARKSRlRKKAYvQqLEssr 155 (309)
-.||-|+||+|-|=| |+||--|
T Consensus 7 yknr~asrk~rakfk---n~lqh~r 28 (63)
T 2c9l_Y 7 YKNRVAARKSRAKFK---QLLQHYR 28 (63)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHH
Confidence 479999999998754 5555444
No 18
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=52.64 E-value=6.6 Score=28.42 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=19.0
Q ss_pred HhhhhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 021676 139 KSRLRKKAYVQQLESSRLKLTQLEQELQRA 168 (309)
Q Consensus 139 KSRlRKKAYvQqLEssr~kL~qleqelqra 168 (309)
+.++.++.||+.||. +|.+||..|+..
T Consensus 51 ~~~~~~~~~~~~L~~---ri~~LE~~l~~l 77 (81)
T 1hwt_C 51 EKELLKDNELKKLRE---RVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHTTC---
T ss_pred ccccchHHHHHHHHH---HHHHHHHHHHHh
Confidence 345567789999987 888999887654
No 19
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=50.51 E-value=7.2 Score=30.06 Aligned_cols=29 Identities=31% Similarity=0.578 Sum_probs=24.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhcceeecc
Q 021676 149 QQLESSRLKLTQLEQELQRARQQGIFISS 177 (309)
Q Consensus 149 QqLEssr~kL~qleqelqrarqQg~~~~~ 177 (309)
|+||.+|..+..||||+.+-|=.=||+.+
T Consensus 33 qeLe~Ck~sIrrLE~evn~ErFrmIYLQT 61 (72)
T 1k1f_A 33 QELERAKASIRRLEQEVNQERFRMIYLQT 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 67999999999999999988866666653
No 20
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=50.12 E-value=26 Score=26.80 Aligned_cols=35 Identities=31% Similarity=0.365 Sum_probs=27.3
Q ss_pred HhHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 021676 132 QNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQ 166 (309)
Q Consensus 132 QNREAARKSRlRKKAYvQqLEssr~kL~qleqelq 166 (309)
.|+.+|-..==|||.|=+||+.--..+.+||+.+.
T Consensus 42 knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~ 76 (79)
T 4abm_A 42 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 76 (79)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45555655555777899999999999999999764
No 21
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=46.53 E-value=27 Score=31.99 Aligned_cols=43 Identities=35% Similarity=0.441 Sum_probs=28.5
Q ss_pred HhHHHH-HHhhhhHHHHHHHHHHh------HHHHHHHHHHHHHHhhccee
Q 021676 132 QNREAA-RKSRLRKKAYVQQLESS------RLKLTQLEQELQRARQQGIF 174 (309)
Q Consensus 132 QNREAA-RKSRlRKKAYvQqLEss------r~kL~qleqelqrarqQg~~ 174 (309)
.|||+. +-+|-||+.-..++..- -.||.-|||||.||.+..+.
T Consensus 100 R~~E~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae~lv 149 (234)
T 3plt_A 100 RNIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAESLV 149 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHhhH
Confidence 366665 45566665555555422 25789999999999987643
No 22
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=45.20 E-value=4.4 Score=32.59 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=18.2
Q ss_pred HHHHHHHHhHHHHHHhhhhHH
Q 021676 125 KTLRRLAQNREAARKSRLRKK 145 (309)
Q Consensus 125 k~lRRLAQNREAARKSRlRKK 145 (309)
+-.||=..||.||+.+|-||.
T Consensus 66 rdiRRRgKNKvAAqnCRKRKl 86 (91)
T 2kz5_A 66 RDIRRRGKNKVAAQNYRKRKL 86 (91)
T ss_dssp HHHHHHHHHHHHTTSCCCCCC
T ss_pred HHHHHHhhhHHHHHHHHHHHH
Confidence 456899999999999999974
No 23
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=44.67 E-value=26 Score=32.35 Aligned_cols=80 Identities=18% Similarity=0.300 Sum_probs=50.3
Q ss_pred cCccHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHhhcceeeccCCCCCCCCCCchhhhHHHHHHH
Q 021676 120 KSGDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQSHSMSGNGAAAFDVEYSR 199 (309)
Q Consensus 120 k~~d~k~lRRLAQNREAARKSRlRKKAYvQqLEssr~kL~qleqelqrarqQg~~~~~~~~~~~~~~~~Ga~aF~~eY~r 199 (309)
+..+|.|.|||+. |++.++|-.|-| ..-.|.||-|+ -|.|++ + ..|.+
T Consensus 19 ~~v~p~~v~r~~~--~~~~~~~~~~~a----~k~~k~~LH~i---------~ga~~~------------~-----~~~~~ 66 (253)
T 3frh_A 19 RALCPDTVRRILT--EEWGRHKSPKQT----VEAARTRLHGI---------CGAYVT------------P-----ESLKA 66 (253)
T ss_dssp TTBCHHHHHHHHH--HHHTTCCCHHHH----HHHHHHHHHHH---------HTTSCC------------H-----HHHHH
T ss_pred cccCHHHHHHHHH--HHHHhcCCHHHH----HHHHHHHHHHH---------HHHhcC------------C-----ccHHH
Confidence 3468999999994 566667744322 23455666654 455552 1 67999
Q ss_pred HHHHHhhhHHHHHHHhhcCCCChhHHHHHHHHHHhHHHHHH
Q 021676 200 WLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFR 240 (309)
Q Consensus 200 WleEq~r~i~ELRaAL~ah~~D~eLr~LVdkvmsHY~eyfr 240 (309)
|+...+ ..+.+.+|..|.+-.| ++..|++.|+
T Consensus 67 ~l~~~~--~~d~~~~l~~H~STre-------rLp~ld~fY~ 98 (253)
T 3frh_A 67 AAAALS--AGDVKKALSLHASTKE-------RLAELDTLYD 98 (253)
T ss_dssp HHHHHH--TTCHHHHHTTSHHHHH-------HGGGHHHHHH
T ss_pred HHHHhc--cCCHHHHHhhCCCHHH-------HhhhHHHHHH
Confidence 998876 3344677888866443 4455555554
No 24
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=43.00 E-value=1e+02 Score=23.15 Aligned_cols=56 Identities=21% Similarity=0.413 Sum_probs=39.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhcceeeccCCCCCCCCCCchhhhHHHHHHHHHHHHhhh---HHHHHHHh
Q 021676 146 AYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQSHSMSGNGAAAFDVEYSRWLEEHNRH---IVELRAAV 215 (309)
Q Consensus 146 AYvQqLEssr~kL~qleqelqrarqQg~~~~~~~~~~~~~~~~Ga~aF~~eY~rWleEq~r~---i~ELRaAL 215 (309)
.+..+|++ .|.+|+..++.-+..|..-| ....+|...+.+|-....+. |.+|..+|
T Consensus 25 ~~~~~i~~---~l~~L~~~v~~L~~~g~W~G-----------~A~~ay~~~~~~W~~~a~~l~~~L~~i~~~l 83 (103)
T 4i0x_B 25 GFKEFVTE---NLDQLESRAQKLVQSGQWAG-----------AAAAAYSQAHKEWMDAARELVEGLSQMEEAA 83 (103)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHTSSCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHhcCCCeec-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666 78888888888777765543 46899999999998655443 44444554
No 25
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=41.54 E-value=7 Score=37.33 Aligned_cols=15 Identities=53% Similarity=0.523 Sum_probs=7.1
Q ss_pred HHhHHHHHHhhhhHH
Q 021676 131 AQNREAARKSRLRKK 145 (309)
Q Consensus 131 AQNREAARKSRlRKK 145 (309)
|+-||||||.|-|||
T Consensus 376 a~aR~aa~karer~~ 390 (390)
T 1s16_A 376 AQRRMRAAKKVVRKK 390 (390)
T ss_dssp HHHHHHHC-------
T ss_pred HHHHHHHHHHHhhcC
Confidence 588999999999876
No 26
>3e1r_A Centrosomal protein of 55 kDa; CEP55, ALIX, cytokinesis, ESCRT, alternative splicing, cell cycle, cell division, coiled coil, mitosis; 2.00A {Homo sapiens}
Probab=40.34 E-value=36 Score=25.32 Aligned_cols=34 Identities=26% Similarity=0.486 Sum_probs=20.9
Q ss_pred HHHHHHhh------hhHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 021676 134 REAARKSR------LRKKAYVQQLESSRLKLTQLEQELQRARQ 170 (309)
Q Consensus 134 REAARKSR------lRKKAYvQqLEssr~kL~qleqelqrarq 170 (309)
|.|-+|-+ +-+.|||+-|+. |+-.|||.+.-|.+
T Consensus 16 kDaleknqqWlvydqqReayV~gll~---~i~eleq~~~~a~~ 55 (58)
T 3e1r_A 16 KDALEKNQQWLVYDQQREVYVKGLLA---KIFELEKKTETAAH 55 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHC----
T ss_pred HHHHHhcchhhhhHHHHHHHHHHHHH---HHHHHHHHHHhhhh
Confidence 45555543 344588888887 88889998876654
No 27
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=35.95 E-value=30 Score=25.67 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=18.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHh
Q 021676 145 KAYVQQLESSRLKLTQLEQELQRAR 169 (309)
Q Consensus 145 KAYvQqLEssr~kL~qleqelqrar 169 (309)
+.||++||. +|.+||..|+...
T Consensus 47 ~~~~~~Le~---rl~~le~~l~~~~ 68 (96)
T 1pyi_A 47 RSYVFFLED---RLAVMMRVLKEYG 68 (96)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHTT
T ss_pred HHHHHHHHH---HHHHHHHHHHHhC
Confidence 469999997 8999999998654
No 28
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=35.71 E-value=27 Score=25.37 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHh
Q 021676 144 KKAYVQQLESSRLKLTQLEQELQRAR 169 (309)
Q Consensus 144 KKAYvQqLEssr~kL~qleqelqrar 169 (309)
++.||++||. ++.+||..|+...
T Consensus 43 ~~~~~~~L~~---r~~~le~~l~~l~ 65 (89)
T 3coq_A 43 TRAHLTEVES---RLERLEQLFLLIF 65 (89)
T ss_dssp CHHHHHHHHH---HHHHHHHHHHHHC
T ss_pred cHHHHHHHHH---HHHHHHHHHHHHc
Confidence 3569999987 8999999998754
No 29
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=32.28 E-value=2.3e+02 Score=26.04 Aligned_cols=94 Identities=16% Similarity=0.190 Sum_probs=52.5
Q ss_pred hhhhHHH-HHHHHHHHHhhhHHHHHHH-hhcC--CCChhHHHHHHHHHHhHHHHHHHHhhhhcccchhh--ccCCCCChH
Q 021676 189 GAAAFDV-EYSRWLEEHNRHIVELRAA-VNSH--AGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHI--LSGMWKTPA 262 (309)
Q Consensus 189 Ga~aF~~-eY~rWleEq~r~i~ELRaA-L~ah--~~D~eLr~LVdkvmsHY~eyfrlKs~AAkaDVfhv--~SG~WkTPl 262 (309)
||..|.. |...+.++. +.+.+.|.. ++.+ .++++|+.+++.++.-+. +..++..- -...| +.
T Consensus 27 GA~vF~~LE~p~E~~~r-~~~~~~~~~fl~~~~~~s~~~l~~~~~~~~~a~~---------~g~~~~~~~~~~~~w--~~ 94 (280)
T 3ukm_A 27 GAVVFSSVELPYEDLLR-QELRKLKRRFLEEHECLSEQQLEQFLGRVLEASN---------YGVSVLSQASGNWNW--DF 94 (280)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHT---------TTCCCC------CCS--SH
T ss_pred HHHHHHHHhCccHHHHH-HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHh---------cCCccccCCCCCCCC--Ch
Confidence 7888986 666665544 344555544 4444 567788888776554221 11222221 12456 45
Q ss_pred HHHHHHh---------cCCCch----hHHHHHHHhhccccchHHH
Q 021676 263 ERCFMWI---------GGFRSS----ELLKVSRLLIAIVPTGIWL 294 (309)
Q Consensus 263 ER~FLWI---------GGFRPS----eLlkLL~sL~Giq~~~~~~ 294 (309)
=.+|.|- |..-|. -++-++|.+.|+-.+.+.+
T Consensus 95 ~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~ 139 (280)
T 3ukm_A 95 TSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFL 139 (280)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 5666664 677775 4566777777776554433
No 30
>1js9_A Coat protein, capsid protein; plant virus, bromoviruses, BMV icosahedral virus; 3.40A {Brome mosaic virus} SCOP: b.121.4.5
Probab=31.89 E-value=9.7 Score=33.77 Aligned_cols=15 Identities=47% Similarity=0.652 Sum_probs=0.0
Q ss_pred HHhHHHHHHhhhhHH
Q 021676 131 AQNREAARKSRLRKK 145 (309)
Q Consensus 131 AQNREAARKSRlRKK 145 (309)
||.|.||||-|.+||
T Consensus 12 aQRRaaaR~nr~~~~ 26 (189)
T 1js9_A 12 AQRRAAARRNRWTAR 26 (189)
T ss_dssp ---------------
T ss_pred HHHHHHHHhhhhhcc
Confidence 788999999999887
No 31
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=30.40 E-value=3.3e+02 Score=25.17 Aligned_cols=66 Identities=8% Similarity=0.125 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhc--CCCChhHHHHHHHHHHhHHHHHHHHhhhhcccchhhccCCCCCh
Q 021676 194 DVEYSRWLEEHNRHIVELRAAVNS--HAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTP 261 (309)
Q Consensus 194 ~~eY~rWleEq~r~i~ELRaAL~a--h~~D~eLr~LVdkvmsHY~eyfrlKs~AAkaDVfhv~SG~WkTP 261 (309)
..+|+.|.. ..-+..+|.-|.. ..+++++..+.+.+....++.++.=.....-|+-.++...|..+
T Consensus 285 ~~e~~~~~~--~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~vy~~~ 352 (367)
T 1umd_A 285 KEEVAFWRK--KDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKEAEEAGPVPPEWMFEDVFAEK 352 (367)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCBCCGGGGGTTSSSSC
T ss_pred HHHHHHHHc--CCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhcCCC
Confidence 468899985 4678888888854 36788999999999999999887644556677777777777654
No 32
>2pw6_A Uncharacterized protein YGID; JW3007, escherichia coli structural genomics, protein structure, riken and PSI, protein structu initiative; 2.27A {Escherichia coli} SCOP: c.56.6.1
Probab=27.56 E-value=43 Score=30.27 Aligned_cols=48 Identities=15% Similarity=0.383 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhhcceeeccCCCCCCCCCCc------hhhhHHHHHHHHHHHH
Q 021676 157 KLTQLEQELQRARQQGIFISSSGDQSHSMSGN------GAAAFDVEYSRWLEEH 204 (309)
Q Consensus 157 kL~qleqelqrarqQg~~~~~~~~~~~~~~~~------Ga~aF~~eY~rWleEq 204 (309)
+.-+|-+-|.++|.+|+.|-+||+-+|..... +......+|.+|+.+.
T Consensus 151 ~~~~lG~aL~~lrd~~VlIigSG~lsHnL~~~~~~~~~~~~~~~~eFD~~~~~~ 204 (271)
T 2pw6_A 151 WHFEMGRKLAALRDEGIMLVASGNVVHNLRTVKWHGDSSPYPWATSFNEYVKAN 204 (271)
T ss_dssp HHHHHHHHHGGGGGGTEEEEEEECSSCCTTSCCSSSCCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCcEEEEeCccccCCCcccccCcCCCCchHHHHHHHHHHH
Confidence 34467777777888899887777777764322 2334567777777643
No 33
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=26.26 E-value=42 Score=24.96 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=17.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhc
Q 021676 146 AYVQQLESSRLKLTQLEQELQRARQQ 171 (309)
Q Consensus 146 AYvQqLEssr~kL~qleqelqrarqQ 171 (309)
.||++|+. ++.+|+++++..++|
T Consensus 57 ~YI~~L~~---~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 57 EYIQYMRR---KNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHH---HHHHHHHHHHTHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHhc
Confidence 59999987 566677777766665
No 34
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=24.78 E-value=72 Score=25.10 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=23.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhcc
Q 021676 146 AYVQQLESSRLKLTQLEQELQRARQQG 172 (309)
Q Consensus 146 AYvQqLEssr~kL~qleqelqrarqQg 172 (309)
.|-.+++....++..||.+|+++|+..
T Consensus 34 ~~~~e~~~~q~~i~~lE~eL~~~r~e~ 60 (95)
T 3mov_A 34 LLAKEKDNSRRMLTDKEREMAEIRDQM 60 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888999999999999988543
No 35
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.25 E-value=81 Score=25.52 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=23.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhc
Q 021676 145 KAYVQQLESSRLKLTQLEQELQRARQQ 171 (309)
Q Consensus 145 KAYvQqLEssr~kL~qleqelqrarqQ 171 (309)
..|-.+|+..+.+|..||.+|+++|+.
T Consensus 73 ~~~~~~l~~~q~~i~~lE~eL~~~r~e 99 (131)
T 3tnu_A 73 GRYCMQLAQIQEMIGSVEEQLAQLRCE 99 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888899999999999999864
No 36
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=22.98 E-value=43 Score=21.99 Aligned_cols=8 Identities=50% Similarity=1.090 Sum_probs=4.1
Q ss_pred HHHHHhhc
Q 021676 301 LFFIFYFF 308 (309)
Q Consensus 301 ~~~~~~~~ 308 (309)
+|.||||+
T Consensus 12 ~~~ifYFl 19 (37)
T 2rdd_B 12 FGLIFYFM 19 (37)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34455654
No 37
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=22.30 E-value=81 Score=25.37 Aligned_cols=28 Identities=36% Similarity=0.419 Sum_probs=23.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhcc
Q 021676 145 KAYVQQLESSRLKLTQLEQELQRARQQG 172 (309)
Q Consensus 145 KAYvQqLEssr~kL~qleqelqrarqQg 172 (309)
..|-.+|+.-..+|..||.+|+++|+..
T Consensus 71 ~~~~~~l~~~q~~i~~lE~eL~~~r~e~ 98 (129)
T 3tnu_B 71 QRGELALKDARNKLAELEEALQKAKQDM 98 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3577788888899999999999998643
No 38
>2jrm_A Ribosome modulation factor; solution structure, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium; NMR {Vibrio parahaemolyticus}
Probab=21.29 E-value=20 Score=27.14 Aligned_cols=16 Identities=31% Similarity=0.895 Sum_probs=10.0
Q ss_pred ChHHHHHHHhcCCCchh
Q 021676 260 TPAERCFMWIGGFRSSE 276 (309)
Q Consensus 260 TPlER~FLWIGGFRPSe 276 (309)
++.-|. .|+||||--.
T Consensus 33 ~~~~r~-~Wl~GWRegr 48 (65)
T 2jrm_A 33 QVDARS-YWLGGWRDAR 48 (65)
T ss_dssp SHHHHH-HHHHHHHHHH
T ss_pred CcHHHH-HHHHHHHHHH
Confidence 333344 8999998543
No 39
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=21.07 E-value=1.8e+02 Score=26.83 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=27.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhcceeecc
Q 021676 146 AYVQQLESSRLKLTQLEQELQRARQQGIFISS 177 (309)
Q Consensus 146 AYvQqLEssr~kL~qleqelqrarqQg~~~~~ 177 (309)
.-.+.|...|.+|.+|+.||++-++=.+++|+
T Consensus 72 ~L~~~Lk~ar~El~~LkeElerL~sPPL~iGt 103 (251)
T 3m9b_A 72 KLMETLKEARQQLLALREEVDRLGQPPSGYGV 103 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 34678889999999999999999998888876
No 40
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=20.69 E-value=2.2e+02 Score=21.39 Aligned_cols=26 Identities=12% Similarity=0.323 Sum_probs=22.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhc
Q 021676 146 AYVQQLESSRLKLTQLEQELQRARQQ 171 (309)
Q Consensus 146 AYvQqLEssr~kL~qleqelqrarqQ 171 (309)
.|-.+++.-..++..||.+|+++|+.
T Consensus 23 ~~~~~~~~~q~~i~~lE~eL~~~r~e 48 (84)
T 1gk4_A 23 NFAVEAANYQDTIGRLQDEIQNMKEE 48 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888889999999999999853
No 41
>1d66_A Protein (GAL4); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.70A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1aw6_A
Probab=20.62 E-value=30 Score=23.68 Aligned_cols=15 Identities=40% Similarity=0.660 Sum_probs=11.1
Q ss_pred HHHHHHHHHhHHHHHHHH
Q 021676 145 KAYVQQLESSRLKLTQLE 162 (309)
Q Consensus 145 KAYvQqLEssr~kL~qle 162 (309)
+.||++||. +|.+||
T Consensus 51 ~~~~~~Le~---rl~~LE 65 (66)
T 1d66_A 51 RAHLTEVES---RLERLE 65 (66)
T ss_dssp HHHHHHHHH---HHTTC-
T ss_pred HHHHHHHHH---HHHHHc
Confidence 579999987 677776
No 42
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=20.55 E-value=1.9e+02 Score=22.81 Aligned_cols=26 Identities=19% Similarity=0.451 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 021676 142 LRKKAYVQQLESSRLKLTQLEQELQRA 168 (309)
Q Consensus 142 lRKKAYvQqLEssr~kL~qleqelqra 168 (309)
||||- ..+|+--.-.+..||.++.|.
T Consensus 45 LKkkl-~~el~~h~~ei~~le~~i~rh 70 (84)
T 1gmj_A 45 LKKHK-ENEISHHAKEIERLQKEIERH 70 (84)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 44443 445555555555555555543
No 43
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=20.52 E-value=4e+02 Score=24.84 Aligned_cols=66 Identities=14% Similarity=0.259 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhc--CCCChhHHHHHHHHHHhHHHHHHHHhhhhcccchhhccCCCCCh
Q 021676 194 DVEYSRWLEEHNRHIVELRAAVNS--HAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTP 261 (309)
Q Consensus 194 ~~eY~rWleEq~r~i~ELRaAL~a--h~~D~eLr~LVdkvmsHY~eyfrlKs~AAkaDVfhv~SG~WkTP 261 (309)
.+||+.|.. .--+..+|.-|-+ .++++++..+.+++.+..++-++.=.....-|+-.++...|..+
T Consensus 284 ~~e~~~~~~--~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~p~p~~~~~~~~vy~~~ 351 (368)
T 1w85_A 284 KELENEWAK--KDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKEAIKKADETPKQKVTDLISIMFEEL 351 (368)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHTSCSSC
T ss_pred HHHHHHHhc--CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhccCCC
Confidence 368999986 5578888888843 36788999999999999998876544445566666666666543
No 44
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=20.42 E-value=98 Score=23.60 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=22.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhc
Q 021676 146 AYVQQLESSRLKLTQLEQELQRARQQ 171 (309)
Q Consensus 146 AYvQqLEssr~kL~qleqelqrarqQ 171 (309)
.|-.+++.-..++.++|.+|+++|+.
T Consensus 25 ~~~~~l~~~q~~i~~lE~el~~~r~e 50 (86)
T 1x8y_A 25 SLARERDTSRRLLAEKEREMAEMRAR 50 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888889999999999998853
No 45
>3nkh_A Integrase; alpha-fold, MRSA protein, structural genomics, PSI-2, protei structure initiative; 2.50A {Staphylococcus aureus subsp}
Probab=20.08 E-value=87 Score=25.63 Aligned_cols=16 Identities=31% Similarity=0.634 Sum_probs=12.8
Q ss_pred HHHhcCCCchhHHHHH
Q 021676 266 FMWIGGFRSSELLKVS 281 (309)
Q Consensus 266 FLWIGGFRPSeLlkLL 281 (309)
+++..|.|++|++.|-
T Consensus 63 l~~~tGlR~~E~~~L~ 78 (244)
T 3nkh_A 63 FQALNGMRIGEMLAIQ 78 (244)
T ss_dssp HHHHHCCCHHHHHTCB
T ss_pred HHHHhCchHHHHhcCc
Confidence 4666899999998764
Done!