BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021677
(309 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AHQ|A Chain A, Hyperactive Human Ero1
Length = 465
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 124/279 (44%), Gaps = 59/279 (21%)
Query: 71 TGMVEDCCCDYETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFWPDDGMCRLRDC 130
+G ++DC CD ET+D N L P LQ+L+ + +FRY+K L CPFW D C RDC
Sbjct: 37 SGYLDDCTCDVETIDRFNNYRLFPRLQKLLESDYFRYYKVNLKRPCPFWNDISQCGRRDC 96
Query: 131 SVXXXXXXXX--XXXXXXXXHILPSDDLMCQEGKPE--ATVDRTLD---KRAFRGWIETD 183
+V + +++L+ + + E VD +L ++A W + D
Sbjct: 97 AVKPAQSDEVPDGIKSASYKYSEEANNLIEEAEQAERLGAVDESLSEETQKAVLQWTKHD 156
Query: 184 NPWTNDDETDN---GEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCPKWMAIV-PAN 239
+ N E D+ E YV+LLLNPERYTGY GP A +IW+ +Y ENC K I P N
Sbjct: 157 DSSDNFAEADDIQSPEAEYVDLLLNPERYTGYKGPDAWKIWNVIYEENCFKPQTIKRPLN 216
Query: 240 P----------------------------------QTRPNPPAKTRPL--------RWGK 257
P N R L +WG
Sbjct: 217 PLASGQGTSEENTFYSWLEGLCVEKRAFYRLISGLHASINVHLSARYLLQETWLEKKWGH 276
Query: 258 NP---ELMYDRVLRYQD---RVRNLYFTFLFVLRAVTKV 290
N + +D +L + R++NLYF +L LRA++KV
Sbjct: 277 NITEFQQRFDGILTEGEGPRRLKNLYFLYLIELRALSKV 315
>pdb|3AHR|A Chain A, Inactive Human Ero1
Length = 465
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 124/279 (44%), Gaps = 59/279 (21%)
Query: 71 TGMVEDCCCDYETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFWPDDGMCRLRDC 130
+G ++DC CD ET+D N L P LQ+L+ + +FRY+K L CPFW D C RD
Sbjct: 37 SGYLDDCTCDVETIDRFNNYRLFPRLQKLLESDYFRYYKVNLKRPCPFWNDISQCGRRDA 96
Query: 131 SVXXXXXXXX--XXXXXXXXHILPSDDLM--CQEGKPEATVDRTLD---KRAFRGWIETD 183
+V + +++L+ C++ + VD +L ++A W + D
Sbjct: 97 AVKPAQSDEVPDGIKSASYKYSEEANNLIEECEQAERLGAVDESLSEETQKAVLQWTKHD 156
Query: 184 NPWTNDDETDN---GEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCPKWMAIV-PAN 239
+ N E D+ E YV+LLLNPERYTGY GP A +IW+ +Y ENC K I P N
Sbjct: 157 DSSDNFAEADDIQSPEAEYVDLLLNPERYTGYKGPDAWKIWNVIYEENCFKPQTIKRPLN 216
Query: 240 P----------------------------------QTRPNPPAKTRPL--------RWGK 257
P N R L +WG
Sbjct: 217 PLASGQGTSEENTFYSWLEGLCVEKRAFYRLISGLHASINVHLSARYLLQETWLEKKWGH 276
Query: 258 NP---ELMYDRVLRYQD---RVRNLYFTFLFVLRAVTKV 290
N + +D +L + R++NLYF +L LRA++KV
Sbjct: 277 NITEFQQRFDGILTEGEGPRRLKNLYFLYLIELRALSKV 315
>pdb|3NVJ|A Chain A, Crystal Structure Of The C143aC166A MUTANT OF ERO1P
Length = 393
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 100/245 (40%), Gaps = 48/245 (19%)
Query: 81 YETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFW-PDDGMCRLRDCSVXXXX--- 136
+ ++++N E + L L+ + FF+YF+ L+ C FW +DG+C R CSV
Sbjct: 18 FNELNAIN-ENIRDDLSALLKSDFFKYFRLDLYKQCSFWDANDGLCLNRACSVDVVEDWD 76
Query: 137 --------XXXXXXXXXXXXHILPSDD------LMCQEGKPEATVDRTLDKRAFRGWIET 182
SDD +CQ K ++ T++
Sbjct: 77 TLPEYWQPEILGSFNNDTMKEADDSDDEAKFLDQLCQTSKKPVDIEDTIN---------- 126
Query: 183 DNPWTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENC------------P 230
+ + ++ + ++L NPER+TGY G A +IW +Y +NC
Sbjct: 127 ---YADVNDFNGKNAVLIDLTANPERFTGYGGKQAGQIWSTIYQDNCFTIGETGESLAKD 183
Query: 231 KWMAIVPANPQTRPNPPAK----TRPLRWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRA 286
+ +V + +K T+ +W N +L R+ + DRV N+YF + V +A
Sbjct: 184 AFYRLVSGFHASIGTHLSKEYLNTKTGKWEPNLDLFMARIGNFPDRVTNMYFNYAVVAKA 243
Query: 287 VTKVS 291
+ K+
Sbjct: 244 LWKIQ 248
>pdb|1RQ1|A Chain A, Structure Of Ero1p, Source Of Disulfide Bonds For
Oxidative Protein Folding In The Cell
Length = 386
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 100/245 (40%), Gaps = 48/245 (19%)
Query: 81 YETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFW-PDDGMCRLRDCSVXXXX--- 136
+ ++++N E + L L+ + FF+YF+ L+ C FW +DG+C R CSV
Sbjct: 18 FNELNAIN-ENIRDDLSALLKSDFFKYFRLDLYKQCSFWDANDGLCLNRACSVDVVEDWD 76
Query: 137 --------XXXXXXXXXXXXHILPSDD------LMCQEGKPEATVDRTLDKRAFRGWIET 182
SDD +CQ K ++ T++
Sbjct: 77 TLPEYWQPEILGSFNNDTMKEADDSDDECKFLDQLCQTSKKPVDIEDTIN---------- 126
Query: 183 DNPWTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENC------------P 230
+ + ++ + ++L NPER+TGY G A +IW +Y +NC
Sbjct: 127 ---YCDVNDFNGKNAVLIDLTANPERFTGYGGKQAGQIWSTIYQDNCFTIGETGESLAKD 183
Query: 231 KWMAIVPANPQTRPNPPAK----TRPLRWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRA 286
+ +V + +K T+ +W N +L R+ + DRV N+YF + V +A
Sbjct: 184 AFYRLVSGFHASIGTHLSKEYLNTKTGKWEPNLDLFMARIGNFPDRVTNMYFNYAVVAKA 243
Query: 287 VTKVS 291
+ K+
Sbjct: 244 LWKIQ 248
>pdb|3M31|A Chain A, Structure Of The C150aC295A MUTANT OF S. CEREVISIAE ERO1P
Length = 388
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 100/232 (43%), Gaps = 22/232 (9%)
Query: 81 YETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFW-PDDGMCRLRDCSVXXXXXXX 139
+ ++++N E + L L+ + FF+YF+ L+ C FW +DG+C R CSV
Sbjct: 17 FNELNAIN-ENIRDDLSALLKSDFFKYFRLDLYKQCSFWDANDGLCLNRACSVDVVEDWD 75
Query: 140 XXXXXXXXXHILPSDDLMCQEGKPEATVDRTLDKRAFRGW----IETDNPWTNDDETDNG 195
+ ++ +E + LD+ A IE + + ++ +
Sbjct: 76 TLPEYWQPEILGSFNNDTMKEADDSDDECKFLDQLAQTSKKPVDIEDTINYCDVNDFNGK 135
Query: 196 EMTYVNLLLNPERYTGYTGPSARRIWDAVYTENC------------PKWMAIVPANPQTR 243
++L NPER+TGY G A +IW +Y +NC + +V +
Sbjct: 136 NAVLIDLTANPERFTGYGGKQAGQIWSTIYQDNCFTIGETGESLAKDAFYRLVSGFHASI 195
Query: 244 PNPPAK----TRPLRWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRAVTKVS 291
+K T+ +W N +L R+ + DRV N+YF + V +A+ K+
Sbjct: 196 GTHLSKEYLNTKTGKWEPNLDLFMARIGNFPDRVTNMYFNYAVVAKALWKIQ 247
>pdb|1RP4|A Chain A, Structure Of Ero1p, Source Of Disulfide Bonds For
Oxidative Protein Folding In The Cell
Length = 389
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 100/245 (40%), Gaps = 48/245 (19%)
Query: 81 YETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFW-PDDGMCRLRDCSVXXXX--- 136
+ ++++N E + L L+ + FF+YF+ L+ C FW +DG+C R CSV
Sbjct: 18 FNELNAIN-ENIRDDLSALLKSDFFKYFRLDLYKQCSFWDANDGLCLNRACSVDVVEDWD 76
Query: 137 --------XXXXXXXXXXXXHILPSDD------LMCQEGKPEATVDRTLDKRAFRGWIET 182
SDD +CQ K ++ T++
Sbjct: 77 TLPEYWQPEILGSFNNDTXKEADDSDDECKFLDQLCQTSKKPVDIEDTIN---------- 126
Query: 183 DNPWTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENC------------P 230
+ + ++ + ++L NPER+TGY G A +IW +Y +NC
Sbjct: 127 ---YCDVNDFNGKNAVLIDLTANPERFTGYGGKQAGQIWSTIYQDNCFTIGETGESLAKD 183
Query: 231 KWMAIVPANPQTRPNPPAK----TRPLRWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRA 286
+ +V + +K T+ +W N +L R+ + DRV N YF + V +A
Sbjct: 184 AFYRLVSGFHASIGTHLSKEYLNTKTGKWEPNLDLFXARIGNFPDRVTNXYFNYAVVAKA 243
Query: 287 VTKVS 291
+ K+
Sbjct: 244 LWKIQ 248
>pdb|2IGL|A Chain A, Crystal Structure Of E. Coli Yedx, A Transthyretin Related
Protein
pdb|2IGL|B Chain B, Crystal Structure Of E. Coli Yedx, A Transthyretin Related
Protein
pdb|2IGL|C Chain C, Crystal Structure Of E. Coli Yedx, A Transthyretin Related
Protein
pdb|2IGL|D Chain D, Crystal Structure Of E. Coli Yedx, A Transthyretin Related
Protein
Length = 118
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 150 ILPSDDLMCQEGKPEATVDRTLDKRAFRGWIETDNPWTNDD 190
IL L Q GKP A V TL+K+A GW++ + T+ D
Sbjct: 9 ILSVHILNQQTGKPAADVTVTLEKKADNGWLQLNTAKTDKD 49
>pdb|2G2N|A Chain A, Crystal Structure Of E.Coli Transthyretin-Related Protein
With Bound Zn
pdb|2G2N|B Chain B, Crystal Structure Of E.Coli Transthyretin-Related Protein
With Bound Zn
pdb|2G2N|C Chain C, Crystal Structure Of E.Coli Transthyretin-Related Protein
With Bound Zn
pdb|2G2N|D Chain D, Crystal Structure Of E.Coli Transthyretin-Related Protein
With Bound Zn
pdb|2G2P|A Chain A, Crystal Structure Of E.coli Transthyretin-related Protein
With Bound Zn And Br
pdb|2G2P|B Chain B, Crystal Structure Of E.coli Transthyretin-related Protein
With Bound Zn And Br
pdb|2G2P|C Chain C, Crystal Structure Of E.coli Transthyretin-related Protein
With Bound Zn And Br
pdb|2G2P|D Chain D, Crystal Structure Of E.coli Transthyretin-related Protein
With Bound Zn And Br
Length = 114
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 150 ILPSDDLMCQEGKPEATVDRTLDKRAFRGWIETDNPWTNDD 190
IL L Q GKP A V TL+K+A GW++ + T+ D
Sbjct: 5 ILSVHILNQQTGKPAADVTVTLEKKADNGWLQLNTAKTDKD 45
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.458
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,994,083
Number of Sequences: 62578
Number of extensions: 353973
Number of successful extensions: 538
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 518
Number of HSP's gapped (non-prelim): 20
length of query: 309
length of database: 14,973,337
effective HSP length: 99
effective length of query: 210
effective length of database: 8,778,115
effective search space: 1843404150
effective search space used: 1843404150
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)