Query 021677
Match_columns 309
No_of_seqs 141 out of 253
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 04:49:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021677.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021677hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2608 Endoplasmic reticulum 100.0 1.8E-85 3.9E-90 640.4 12.6 264 22-308 3-298 (469)
2 PF04137 ERO1: Endoplasmic Ret 100.0 1.6E-75 3.5E-80 566.2 -0.7 211 91-308 2-242 (357)
3 COG5061 ERO1 Oxidoreductin, en 100.0 6.3E-52 1.4E-56 396.3 4.5 212 70-298 21-253 (425)
4 PF14812 PBP1_TM: Transmembran 54.1 1.1 2.3E-05 36.1 -3.4 15 19-33 63-77 (81)
5 PF15264 TSSC4: Tumour suppres 44.7 8.7 0.00019 32.7 0.5 12 203-214 58-69 (115)
6 PRK12785 fliL flagellar basal 37.7 15 0.00032 32.6 0.8 34 1-34 1-36 (166)
7 PF13124 DUF3963: Protein of u 32.4 60 0.0013 22.6 2.9 29 261-289 7-36 (40)
8 PRK13159 cytochrome c-type bio 31.6 21 0.00045 31.9 0.8 56 21-76 7-62 (155)
9 PRK08455 fliL flagellar basal 30.7 25 0.00055 31.8 1.2 7 1-7 1-7 (182)
10 PF13677 MotB_plug: Membrane M 30.7 37 0.00079 25.2 1.8 9 18-26 12-20 (58)
11 PHA02450 hypothetical protein 30.4 13 0.00029 27.1 -0.5 24 203-229 4-27 (53)
12 KOG0910 Thioredoxin-like prote 25.6 47 0.001 29.6 1.9 30 92-121 79-110 (150)
13 PRK13717 conjugal transfer pro 24.8 58 0.0013 28.4 2.3 34 20-53 15-52 (128)
14 PF03100 CcmE: CcmE; InterPro 23.8 36 0.00079 28.9 0.9 12 66-77 51-62 (131)
15 PF10814 DUF2562: Protein of u 23.0 71 0.0015 27.9 2.5 26 16-41 83-108 (133)
16 TIGR03715 KxYKxGKxW KxYKxGKxW 22.6 68 0.0015 20.5 1.8 13 18-30 8-20 (29)
17 PF14155 DUF4307: Domain of un 20.2 81 0.0017 26.3 2.2 17 129-145 64-80 (112)
18 cd04366 IlGF_insulin_bombyxin_ 20.2 1.3E+02 0.0027 21.3 2.8 15 71-85 22-39 (42)
No 1
>KOG2608 consensus Endoplasmic reticulum membrane-associated oxidoreductin involved in disulfide bond formation [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-85 Score=640.38 Aligned_cols=264 Identities=44% Similarity=0.796 Sum_probs=234.7
Q ss_pred cchHHHHHHHHHHHHhhhhhcccCCccccccCCCCcccccCCCCCCccccccccCcccchHhHHhhhhhhhhHHHHHhhc
Q 021677 22 RGLWSVWAVIVVLFATAAVTTRTGSKIALFANNQTSCHCSSSSQDSVKYTGMVEDCCCDYETVDSVNGEVLHPLLQQLVT 101 (309)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c~~~~~~~~~~~G~VdDc~c~~etId~~N~~~i~P~L~~Lv~ 101 (309)
||.|++..+.++.+++ .++ +.|.. ..|||+ +.|+|+||+||++|||++|+++|+|+|+.|++
T Consensus 3 r~~~l~~l~~~~~l~~-~v~-------~~~~~--~~~~ck--------~~~~i~dc~c~~~~i~nln~~~i~~~lq~l~k 64 (469)
T KOG2608|consen 3 RAIALLGLIAAVKLIS-VVN-------TQFAS--SICFCK--------VDGIIEDCTCDYETIDNLNNEVIYPLLQKLLK 64 (469)
T ss_pred hhHHHHHHHHHHHHHH-hcc-------ccccc--cceeee--------cccccccCCCCHHHHHHhhccccchHHHHHhc
Confidence 4888777666666666 454 22222 689999 77999999999999999999999999999999
Q ss_pred CCcccEEeeeCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCC-CccccccCCC-CcccccccchhhhcCc
Q 021677 102 TPFFRYFKAKLWCDCPFWPDDGMCRLRDCSVCECPENEFPEPFKKPFHILPS-DDLMCQEGKP-EATVDRTLDKRAFRGW 179 (309)
Q Consensus 102 tdfFRyfKVNL~~~CPFW~dd~~C~~~~C~V~~c~e~eiP~~wr~~~~~l~~-~~~~c~~~~~-~~~vd~tl~~~~~~~w 179 (309)
+||||||||||+++||||+||+||++++|+|++|+|+|||++||++.+++++ .-..|+.+++ ++.+|++++.++|..|
T Consensus 65 sdffryYkvnL~~~CpFW~Dd~~C~~r~C~V~~c~e~evPe~~k~~~~~~~~~~~~e~~~~~~~~~~~d~tl~dr~f~~w 144 (469)
T KOG2608|consen 65 SDFFRYYKVNLYRDCPFWPDDGMCLNRACSVEPCPEDEVPEGWKKSLGKYEPELCSECEDADSELGAKDRTLSDRAFLLW 144 (469)
T ss_pred ccchhheeccccCCCCCCCchhhhhhcCCccccCcccccchhhhhhhhccChhhhhhhhhccccccchhccccccccccc
Confidence 9999999999999999999999999999999999999999999986655554 2245555555 8899999998999999
Q ss_pred cccCCC-CcCCCCCCCCcceEeeCCCCCCCCCCCCCCChhhhHHHHHhhcCCCCC------C------CCCC--------
Q 021677 180 IETDNP-WTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCPKWM------A------IVPA-------- 238 (309)
Q Consensus 180 ~~~D~~-~~~~De~d~~~~~YVDLl~NPERyTGY~G~~A~rIW~aIY~ENCF~~~------~------~~~C-------- 238 (309)
..+|+. ||..|+.++++++||||++||||||||+|++|+|||++||+||||++. . .++|
T Consensus 145 ~~~d~~~~C~~dd~~s~~~~YVdLl~NPERyTGY~G~sa~rIW~sIYeeNCf~~~~~~~~~~~~~~~l~g~clEkrvfYr 224 (469)
T KOG2608|consen 145 DKHDDLSFCEVDDEESPEMVYVDLLLNPERYTGYKGPSAARIWRSIYEENCFKPDPLFDPNSIPYNWLEGLCLEKRVFYR 224 (469)
T ss_pred cccCCccceeecCCCCCCcEEEehhcChhhhcCCCCCCHHHHHHHHHHhhCCCCCcccCCcccccchhccccHHHHHHHH
Confidence 999998 899888888999999999999999999999999999999999999875 1 4788
Q ss_pred ----cCCCCCCCccCC----CCC-CCCCChHHHHHHHhhhccchhhHHHHHHHHHHHhhhhcccccceeeeeeeeeecC
Q 021677 239 ----NPQTRPNPPAKT----RPL-RWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRAVTKVSISSCSFVLNIWVFYVGL 308 (309)
Q Consensus 239 ----LHaSIsiHl~~~----~~~-~W~pNl~~F~~Rv~~~PeRL~NLYF~YllvLRAl~Ka~p~~~nf~~~~~~fy~g~ 308 (309)
|||||+||||++ .++ .||||+++|++||++||+||+||||+|++|||||.||+| ||....||||.
T Consensus 225 LISGlHsSIstHl~~~~y~~~e~~~WgpNl~~f~~Rf~~~P~Rl~NlYF~Yll~lrAl~Ki~p-----yl~~~~~~tgn 298 (469)
T KOG2608|consen 225 LISGLHSSISTHLCSFYYLLEETKRWGPNLDLFRARFGNGPDRLRNLYFTYLLVLRALGKIAP-----YLEELDFYTGN 298 (469)
T ss_pred HHHHHHHHHHHHHhhhhcCCCcccccCcCHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhcc-----hhhhhhhcccc
Confidence 999999999995 444 699999999999999999999999999999999999999 77777999995
No 2
>PF04137 ERO1: Endoplasmic Reticulum Oxidoreductin 1 (ERO1); InterPro: IPR007266 Members of this family are required for the formation of disulphide bonds in the endoplasmic reticulum [, ].; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0050660 flavin adenine dinucleotide binding, 0006467 protein thiol-disulfide exchange, 0055114 oxidation-reduction process, 0005789 endoplasmic reticulum membrane; PDB: 1RQ1_A 1RP4_A 3NVJ_A 3M31_A 3AHR_A 3AHQ_A.
Probab=100.00 E-value=1.6e-75 Score=566.23 Aligned_cols=211 Identities=45% Similarity=0.825 Sum_probs=154.8
Q ss_pred hhhHHHHHhhcCCcccEEeeeCCCCCCCCCCC-CCCCCCCcccccCCCCCCCCCCCCCCCCCCCCccccccCCCCccccc
Q 021677 91 VLHPLLQQLVTTPFFRYFKAKLWCDCPFWPDD-GMCRLRDCSVCECPENEFPEPFKKPFHILPSDDLMCQEGKPEATVDR 169 (309)
Q Consensus 91 ~i~P~L~~Lv~tdfFRyfKVNL~~~CPFW~dd-~~C~~~~C~V~~c~e~eiP~~wr~~~~~l~~~~~~c~~~~~~~~vd~ 169 (309)
+|+|+|++|+++||||||||||+++||||+++ ++|++++|+|++|+++|||+.||++.+.+.. ..|++++.+..+|.
T Consensus 2 ~i~p~L~~L~~~~fFRyfKVnL~k~CpFW~dd~~~C~~~~C~V~~c~e~eiP~~wr~~~~~~~~--~~~~~~~~~~~~~~ 79 (357)
T PF04137_consen 2 KIFPLLQELVKTDFFRYFKVNLYKECPFWNDDNGMCGSRDCAVCECDENEIPEPWRAELSKLEQ--SACEEGSDQSDLDR 79 (357)
T ss_dssp CCHHHHHHHHCSCCCCEEEEESS---SSSSSSSS---TCCCBB-TSS-GGS-GGGSHHHTS--T--TTECCHCCHCSGGG
T ss_pred cchHHHHHHhCCCCeEEEeecCCCCCCCCCCcccCcCCCCCeeeeCChhhcCcccccccccccc--hhcccccchhhhcC
Confidence 58999999999999999999999999999999 9999999999999999999999982233332 23444444456788
Q ss_pred ccch-hhhcCccccCCC--CcCCCCCCCCcceEeeCCCCCCCCCCCCCCChhhhHHHHHhhcCCCCCC-------CCCC-
Q 021677 170 TLDK-RAFRGWIETDNP--WTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCPKWMA-------IVPA- 238 (309)
Q Consensus 170 tl~~-~~~~~w~~~D~~--~~~~De~d~~~~~YVDLl~NPERyTGY~G~~A~rIW~aIY~ENCF~~~~-------~~~C- 238 (309)
+++. .++..|..+|+. ||..|++++++++||||++||||||||+|++|+|||++||+||||++.. +++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~c~~dd~~~~~~~YVDL~~NPEryTGY~G~~a~rIW~aIY~ENCF~~~~~~~~~~~~~~C~ 159 (357)
T PF04137_consen 80 TLSDCDEFCDWEDHDDSDDFCDLDDESSEEGVYVDLLLNPERYTGYSGPSAHRIWRAIYEENCFKPGSPSDPSWLDGMCL 159 (357)
T ss_dssp SBGHCCCCCCCHHCCCCTTHHHHTT---TTEEEEECCCS------B-CHHHHHHHHHHHCT--B-TTSTTH-------HC
T ss_pred ChhhhhhhcCccccccchhcCcCCCCCCCCceEEEcccCcccccCCCCCcHHHHHHHHHHHhCCCCCccccccccccccH
Confidence 8775 678889887652 7776665668899999999999999999999999999999999997643 3689
Q ss_pred -----------cCCCCCCCccCC----CC---CCCCCChHHHHHHHhhhccchhhHHHHHHHHHHHhhhhcccccceeee
Q 021677 239 -----------NPQTRPNPPAKT----RP---LRWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRAVTKVSISSCSFVLN 300 (309)
Q Consensus 239 -----------LHaSIsiHl~~~----~~---~~W~pNl~~F~~Rv~~~PeRL~NLYF~YllvLRAl~Ka~p~~~nf~~~ 300 (309)
||||||||||++ .+ |.|+||+++|++|||+|||||+||||+|+||||||+||+|++.++
T Consensus 160 EkrvfyrlISGlHaSIs~Hl~~~y~~~~~~~~g~w~pNl~~F~~R~g~~peRl~NLYF~y~~~lRAl~K~~p~l~~~--- 236 (357)
T PF04137_consen 160 EKRVFYRLISGLHASISIHLCAEYLNDETWEEGEWGPNLEEFMERFGEHPERLKNLYFTYLLVLRALAKAAPYLENY--- 236 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTEEECCTSS-EEEE--HHHHHHHCTCHHHHHHHHHHHHHHHHHHHHCCHHHHHST---
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcCCcccccccCCCCHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 999999999999 44 789999999999999999999999999999999999999955555
Q ss_pred eeeeeecC
Q 021677 301 IWVFYVGL 308 (309)
Q Consensus 301 ~~~fy~g~ 308 (309)
.||||-
T Consensus 237 --~~~tg~ 242 (357)
T PF04137_consen 237 --DFNTGN 242 (357)
T ss_dssp -----STT
T ss_pred --ccccCC
Confidence 788884
No 3
>COG5061 ERO1 Oxidoreductin, endoplasmic reticulum membrane-associated protein involved in disulfide bond formation [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=100.00 E-value=6.3e-52 Score=396.29 Aligned_cols=212 Identities=25% Similarity=0.476 Sum_probs=173.3
Q ss_pred ccccccC-cccchHhHHhhhhhhhhHHHHHhhcCCcccEEeeeCC-CCCCCCCC-CCCCCCCCcccccCCCCC-CCCCCC
Q 021677 70 YTGMVED-CCCDYETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLW-CDCPFWPD-DGMCRLRDCSVCECPENE-FPEPFK 145 (309)
Q Consensus 70 ~~G~VdD-c~c~~etId~~N~~~i~P~L~~Lv~tdfFRyfKVNL~-~~CPFW~d-d~~C~~~~C~V~~c~e~e-iP~~wr 145 (309)
..-+|.+ |+.++. |.++|.+ +.|+|-.|+++|||+||++||+ ++||||+| ++||.+++|+|..-+|.+ ||+.|+
T Consensus 21 ~~~iis~t~nss~~-i~~~ns~-vr~ll~~LteSDym~yyrlnLy~k~c~lw~ddn~mc~s~acnv~v~~e~d~vpkvW~ 98 (425)
T COG5061 21 PEIIISQTDNSSTG-IYQMNSK-VRSLLPVLTESDYMFYYRLNLYAKACTLWPDDNDMCVSKACNVTVRSEEDLVPKVWK 98 (425)
T ss_pred chheecCcccccch-HHHHhhh-hhhhhHHhhhhhHHHHHHHHHHHhhCCCCCCcchhhhcccccceehhhhhcchhHhH
Confidence 3445555 667788 9999987 7999999999999999999999 69999998 589999999999999887 999998
Q ss_pred CCCCCCCCCccccccCCCCcccccccchhhhcCcccc-CCCCcCCCCCCCCcceEeeCCCCCCCCCCCCCCChhhhHHHH
Q 021677 146 KPFHILPSDDLMCQEGKPEATVDRTLDKRAFRGWIET-DNPWTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWDAV 224 (309)
Q Consensus 146 ~~~~~l~~~~~~c~~~~~~~~vd~tl~~~~~~~w~~~-D~~~~~~De~d~~~~~YVDLl~NPERyTGY~G~~A~rIW~aI 224 (309)
..-+.... .|. .+| .+..|..- |..+|+.|.....+.+||||+.||||||||+|++|++||+.|
T Consensus 99 ~kls~f~p---h~k------kld------q~c~~sk~pd~~YCyvdn~~~~n~vyisLlenpErfTGY~g~hSa~IWr~I 163 (425)
T COG5061 99 DKLSLFKP---HSK------KLD------QFCSESKCPDLSYCYVDNKSIFNDVYISLLENPERFTGYKGNHSAEIWRKI 163 (425)
T ss_pred hhhhhhcc---chh------hhh------hccccccCCchhheeecCCCCCCcEEeehhcChHhhcCCCCCchHHHHHHH
Confidence 53222111 010 111 11222222 234677666666789999999999999999999999999999
Q ss_pred HhhcCCCCCCCCC------C------cCCCCCCCccCC----CCCCCCCChHHHHHHHhhhccchhhHHHHHHHHHHHhh
Q 021677 225 YTENCPKWMAIVP------A------NPQTRPNPPAKT----RPLRWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRAVT 288 (309)
Q Consensus 225 Y~ENCF~~~~~~~------C------LHaSIsiHl~~~----~~~~W~pNl~~F~~Rv~~~PeRL~NLYF~YllvLRAl~ 288 (309)
|+.|||.....+. - |||||+||+|.+ .+|.|+|||++|+.|||++||||.|+||+|++|.+||.
T Consensus 164 yeqncfd~~~~p~~Lekr~FyRlvSGfhaSIsTHls~~yln~~~g~w~pNldlfrarvgnfpdRieN~yfnYalv~~al~ 243 (425)
T COG5061 164 YEQNCFDTLLPPTLLEKRMFYRLVSGFHASISTHLSSFYLNVFFGTWLPNLDLFRARVGNFPDRIENFYFNYALVRSALG 243 (425)
T ss_pred HHhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcceecCCHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 9999997643211 0 999999999998 78999999999999999999999999999999999999
Q ss_pred hhccccccee
Q 021677 289 KVSISSCSFV 298 (309)
Q Consensus 289 Ka~p~~~nf~ 298 (309)
|+.+.+.+|.
T Consensus 244 kI~~~l~sft 253 (425)
T COG5061 244 KIDVDLSSFT 253 (425)
T ss_pred hhccCCcccc
Confidence 9999777664
No 4
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=54.12 E-value=1.1 Score=36.09 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=4.1
Q ss_pred cCCcchHHHHHHHHH
Q 021677 19 GLGRGLWSVWAVIVV 33 (309)
Q Consensus 19 ~~~~~~~~~~~~~~~ 33 (309)
..++|.|+++.|++|
T Consensus 63 kKrrwlwLlikl~lV 77 (81)
T PF14812_consen 63 KKRRWLWLLIKLFLV 77 (81)
T ss_dssp --------TTTTHCC
T ss_pred ccchhHHHHHHHHHH
Confidence 456677776665555
No 5
>PF15264 TSSC4: Tumour suppressing sub-chromosomal transferable candidate 4
Probab=44.73 E-value=8.7 Score=32.65 Aligned_cols=12 Identities=42% Similarity=0.769 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCC
Q 021677 203 LLNPERYTGYTG 214 (309)
Q Consensus 203 l~NPERyTGY~G 214 (309)
++||||||-|+=
T Consensus 58 v~nP~KwTkYSL 69 (115)
T PF15264_consen 58 VRNPEKWTKYSL 69 (115)
T ss_pred cCCcccceeeec
Confidence 499999999984
No 6
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=37.72 E-value=15 Score=32.62 Aligned_cols=34 Identities=26% Similarity=0.216 Sum_probs=15.8
Q ss_pred Cccccchhhhhh-HHHH-hhcCCcchHHHHHHHHHH
Q 021677 1 MAKDKKRNDQIS-KEKK-KKGLGRGLWSVWAVIVVL 34 (309)
Q Consensus 1 ~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~ 34 (309)
||++++.|+.-. ++.+ +++.++..++++++++++
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~kkk~liii~~~~lll 36 (166)
T PRK12785 1 MAKKPKKAPAAEGGEGAAPPKKKKKLIIIAAAAVLL 36 (166)
T ss_pred CCCCcccccccccccccCCCCCcceEeeHHHHHHHH
Confidence 788766665333 2322 233444544433333333
No 7
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=32.38 E-value=60 Score=22.62 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=21.5
Q ss_pred HHHHH-HhhhccchhhHHHHHHHHHHHhhh
Q 021677 261 LMYDR-VLRYQDRVRNLYFTFLFVLRAVTK 289 (309)
Q Consensus 261 ~F~~R-v~~~PeRL~NLYF~YllvLRAl~K 289 (309)
-|.+| +..-..+|+|+=|.++++.-+|..
T Consensus 7 ~fieryfddiqkwirnit~cfal~vv~lvs 36 (40)
T PF13124_consen 7 AFIERYFDDIQKWIRNITFCFALLVVVLVS 36 (40)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666 345567999999999988777653
No 8
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=31.58 E-value=21 Score=31.94 Aligned_cols=56 Identities=9% Similarity=0.102 Sum_probs=26.7
Q ss_pred CcchHHHHHHHHHHHHhhhhhcccCCccccccCCCCcccccCCCCCCccccccccC
Q 021677 21 GRGLWSVWAVIVVLFATAAVTTRTGSKIALFANNQTSCHCSSSSQDSVKYTGMVED 76 (309)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c~~~~~~~~~~~G~VdD 76 (309)
+|..+++++++++.+|++.+.+--...++.|-.+++.=-=....++..++-|+|..
T Consensus 7 rRl~~v~~~~~~~~~a~~Lv~~al~~n~~yF~tpsEv~~~~~~~~~~~RlGG~V~~ 62 (155)
T PRK13159 7 QRLWLVIGVLTAAALAVTLIVLALQRNMSYLFTPSQVRAGAAAGYQQFRLGGMVKA 62 (155)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhCceEEECHHHHhcCCcccCCeEEEccEEec
Confidence 35555555655555555444444444456664443310000012355566777654
No 9
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=30.74 E-value=25 Score=31.76 Aligned_cols=7 Identities=29% Similarity=0.648 Sum_probs=4.2
Q ss_pred Cccccch
Q 021677 1 MAKDKKR 7 (309)
Q Consensus 1 ~~~~~~~ 7 (309)
||++.+.
T Consensus 1 MAee~~~ 7 (182)
T PRK08455 1 MAEEQEN 7 (182)
T ss_pred CCcchhh
Confidence 7766544
No 10
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=30.74 E-value=37 Score=25.16 Aligned_cols=9 Identities=33% Similarity=0.287 Sum_probs=5.0
Q ss_pred hcCCcchHH
Q 021677 18 KGLGRGLWS 26 (309)
Q Consensus 18 ~~~~~~~~~ 26 (309)
.+.++|.-.
T Consensus 12 ~~~~~Wlvt 20 (58)
T PF13677_consen 12 EGSPRWLVT 20 (58)
T ss_pred CCCccHHHH
Confidence 346677543
No 11
>PHA02450 hypothetical protein
Probab=30.35 E-value=13 Score=27.13 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=19.6
Q ss_pred CCCCCCCCCCCCCChhhhHHHHHhhcC
Q 021677 203 LLNPERYTGYTGPSARRIWDAVYTENC 229 (309)
Q Consensus 203 l~NPERyTGY~G~~A~rIW~aIY~ENC 229 (309)
..|||.||-|.|. -+--.||.=+-
T Consensus 4 ~in~egf~ryggd---c~cg~iyty~g 27 (53)
T PHA02450 4 EINPEGFTRYGGD---CTCGPIYTYGG 27 (53)
T ss_pred ccCcccceeeCCc---ccccceeeeCC
Confidence 3699999999998 67778887664
No 12
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.64 E-value=47 Score=29.60 Aligned_cols=30 Identities=27% Similarity=0.373 Sum_probs=25.7
Q ss_pred hhHHHHHhhc--CCcccEEeeeCCCCCCCCCC
Q 021677 92 LHPLLQQLVT--TPFFRYFKAKLWCDCPFWPD 121 (309)
Q Consensus 92 i~P~L~~Lv~--tdfFRyfKVNL~~~CPFW~d 121 (309)
|.|+|++|++ ..=|++||||.+..=.+|.+
T Consensus 79 l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~ 110 (150)
T KOG0910|consen 79 LGPILEELVSEYAGKFKLYKVDTDEHPELAED 110 (150)
T ss_pred hhHHHHHHHHhhcCeEEEEEEccccccchHhh
Confidence 6899999995 78999999999887776664
No 13
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=24.84 E-value=58 Score=28.35 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=21.0
Q ss_pred CCcchHHHHHHHHHHHHhhhhhc----ccCCccccccC
Q 021677 20 LGRGLWSVWAVIVVLFATAAVTT----RTGSKIALFAN 53 (309)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 53 (309)
+++|.|.+.+++..+++.|++|. ...|.+-.|.-
T Consensus 15 ~~~~~~~~~~~~~~~~~~a~~s~~~~~~~~P~iV~FDm 52 (128)
T PRK13717 15 RSHWWWTVPGCLAMVLLNAAVSYGIVRLNAPVTAAFNM 52 (128)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeh
Confidence 44588887777766666654443 34666666643
No 14
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=23.78 E-value=36 Score=28.90 Aligned_cols=12 Identities=25% Similarity=0.426 Sum_probs=8.5
Q ss_pred CCccccccccCc
Q 021677 66 DSVKYTGMVEDC 77 (309)
Q Consensus 66 ~~~~~~G~VdDc 77 (309)
+..++.|.|..=
T Consensus 51 ~~vrv~G~V~~g 62 (131)
T PF03100_consen 51 RKVRVGGLVVEG 62 (131)
T ss_dssp SEEEEEEEEECT
T ss_pred ceEEEeeEEccC
Confidence 566788888753
No 15
>PF10814 DUF2562: Protein of unknown function (DUF2562); InterPro: IPR024245 This protein of unknown function appears to be found predominantly in Mycobacterium spp.
Probab=23.03 E-value=71 Score=27.88 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=15.8
Q ss_pred HhhcCCcchHHHHHHHHHHHHhhhhh
Q 021677 16 KKKGLGRGLWSVWAVIVVLFATAAVT 41 (309)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (309)
++..++|--|+++++.+++||..+++
T Consensus 83 ~~~rr~rRplliagv~~~vLagGavA 108 (133)
T PF10814_consen 83 RRRRRRRRPLLIAGVAVAVLAGGAVA 108 (133)
T ss_pred HhccccccchHHHHHHHHHHhccceE
Confidence 33445467788777766666654443
No 16
>TIGR03715 KxYKxGKxW KxYKxGKxW signal peptide. This model describes a novel form of signal peptide that occurs as an N-terminal domain with a recognizable motif, reminiscent of the YSIRK and PEP-CTERM forms of signal peptide. This domain tends to occur on long, low-complexity (usually Serine-rich and heavily glycosylated) proteins of the Firmicutes, and (as with YSIRK) the majority of these proteins have the LPXTG cell wall-anchoring motif at the C-terminus.
Probab=22.61 E-value=68 Score=20.51 Aligned_cols=13 Identities=8% Similarity=0.028 Sum_probs=7.3
Q ss_pred hcCCcchHHHHHH
Q 021677 18 KGLGRGLWSVWAV 30 (309)
Q Consensus 18 ~~~~~~~~~~~~~ 30 (309)
|++++|+-..++.
T Consensus 8 KsGK~Wv~a~~~~ 20 (29)
T TIGR03715 8 KSGKQWVFAAITT 20 (29)
T ss_pred ecccHHHHHHHHH
Confidence 5677765544433
No 17
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=20.24 E-value=81 Score=26.28 Aligned_cols=17 Identities=12% Similarity=-0.042 Sum_probs=8.5
Q ss_pred CcccccCCCCCCCCCCC
Q 021677 129 DCSVCECPENEFPEPFK 145 (309)
Q Consensus 129 ~C~V~~c~e~eiP~~wr 145 (309)
.|.|.--+++.-..++|
T Consensus 64 ~C~VrA~~~d~aeVGrr 80 (112)
T PF14155_consen 64 VCIVRALDYDGAEVGRR 80 (112)
T ss_pred EEEEEEEeCCCCEEEEE
Confidence 45555555554444444
No 18
>cd04366 IlGF_insulin_bombyxin_like IlGF_like family, insulin_bombyxin_like subgroup. Members include a number of peptides including insulin, insulin-like growth factors I and II, insect prothoracicotropic hormone (bombyxin), locust insulin-related peptide (LIRP), molluscan insulin-related peptides 1 to 5 (MIP), and C. elegans insulin-like peptides. With the exception of insulin-like growth factors, the active forms of these peptide hormones are composed of two chains (A and B) linked by two disulfide bonds; the arrangement of four cysteines is conserved in the "A" chain: Cys1 is linked by a disulfide bond to Cys3, Cys2 and Cys4 are linked by interchain disulfide bonds to cysteines in the "B" chain. This alignment contains both chains, plus the intervening linker region, arranged as found in the propeptide form. Propeptides are cleaved to yield two separate chains linked covalently by the two disulfide bonds.
Probab=20.16 E-value=1.3e+02 Score=21.30 Aligned_cols=15 Identities=33% Similarity=1.167 Sum_probs=11.2
Q ss_pred cccccCcc---cchHhHH
Q 021677 71 TGMVEDCC---CDYETVD 85 (309)
Q Consensus 71 ~G~VdDc~---c~~etId 85 (309)
.|+||.|| |++..+.
T Consensus 22 ~gIvdeCC~~~Ct~~~L~ 39 (42)
T cd04366 22 RGIVDECCRKSCTLDELL 39 (42)
T ss_pred CChhhccCCCcCCHHHHH
Confidence 69999997 6666554
Done!