Query 021677
Match_columns 309
No_of_seqs 141 out of 253
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 07:40:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021677.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021677hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ahq_A ERO1-like protein alpha 100.0 7E-86 2.4E-90 653.5 -2.2 244 53-307 27-329 (465)
2 3m31_A Endoplasmic oxidoreduct 100.0 1.4E-76 4.6E-81 574.6 4.5 219 70-297 8-253 (388)
3 2wfu_A Probable insulin-like p 33.0 9.4 0.00032 23.7 0.1 15 72-86 1-18 (26)
4 1pid_A Despentapeptide insulin 31.5 9.6 0.00033 23.6 -0.1 15 72-86 1-18 (26)
5 3s8f_B Cytochrome C oxidase su 29.3 39 0.0013 28.9 3.4 32 4-40 4-35 (168)
6 2rng_A BIG defensin; alpha-hel 28.4 8 0.00027 29.7 -1.0 55 19-90 14-68 (79)
7 2wfv_A Probable insulin-like p 26.9 12 0.00041 23.1 -0.2 16 71-86 3-21 (26)
8 3vmt_A Monofunctional glycosyl 21.5 50 0.0017 30.5 2.7 25 13-37 27-51 (263)
9 2k72_A Matrix metalloproteinas 20.6 11 0.00038 24.3 -1.4 18 110-127 4-21 (37)
10 1igl_A Insulin-like growth fac 20.1 36 0.0012 25.1 1.2 18 70-87 39-59 (67)
No 1
>3ahq_A ERO1-like protein alpha; disulfide bond, PDI, redox, hyperactive human ERO1, oxidored; HET: FAD; 2.35A {Homo sapiens} PDB: 3ahr_A*
Probab=100.00 E-value=7e-86 Score=653.49 Aligned_cols=244 Identities=33% Similarity=0.621 Sum_probs=174.7
Q ss_pred CCCCcccccCCCCCCccccccccCcccchHhHHhhhhhhhhHHHHHhhcCCcccEEeeeCCCCCCCCCCCCCCCCCCccc
Q 021677 53 NNQTSCHCSSSSQDSVKYTGMVEDCCCDYETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFWPDDGMCRLRDCSV 132 (309)
Q Consensus 53 ~~~~~c~c~~~~~~~~~~~G~VdDc~c~~etId~~N~~~i~P~L~~Lv~tdfFRyfKVNL~~~CPFW~dd~~C~~~~C~V 132 (309)
...+.|||+ ++|+|+||||+|+|||++|+++|+|+|++|+++||||||||||+++||||+|+++|++++|+|
T Consensus 27 ~~~~~c~c~--------~~g~v~Dc~c~~etId~~N~~~i~p~L~~L~~t~fFRyfkVnL~k~CPFW~d~~~C~~~~C~V 98 (465)
T 3ahq_A 27 TAAQRCFCQ--------VSGYLDDCTCDVETIDRFNNYRLFPRLQKLLESDYFRYYKVNLKRPCPFWNDISQCGRRDCAV 98 (465)
T ss_dssp ----CEEEE--------CSSSSCEEECCHHHHHHHHHHTTHHHHHHHHHSHHHHEEEECCCCCCSSCC------------
T ss_pred CCCCCcccC--------CCCccccCcCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCCCCCccCCcCCCCCee
Confidence 456789999 999999999999999999997899999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCC----ccccccCCCCcccccccch---hhhcCccccCCC---CcCCCCCCCCcceEeeC
Q 021677 133 CECPENEFPEPFKKPFHILPSD----DLMCQEGKPEATVDRTLDK---RAFRGWIETDNP---WTNDDETDNGEMTYVNL 202 (309)
Q Consensus 133 ~~c~e~eiP~~wr~~~~~l~~~----~~~c~~~~~~~~vd~tl~~---~~~~~w~~~D~~---~~~~De~d~~~~~YVDL 202 (309)
++|+|+|||++||.+..+++.+ ...|+++..++.||++++. ++|.+|.++|++ +|..||+++++++||||
T Consensus 99 ~~c~e~eiP~~wr~~~~~~~~~~~~~~~~c~~~~~lg~vd~tls~~~~~~~~~w~~~dd~~~~fC~~dDe~~~~~~YVdL 178 (465)
T 3ahq_A 99 KPAQSDEVPDGIKSASYKYSEEANNLIEEAEQAERLGAVDESLSEETQKAVLQWTKHDDSSDNFAEADDIQSPEAEYVDL 178 (465)
T ss_dssp ------------------------------CCHHHHHCCCCCCCHHHHHHHHHHHHHHHHTTCC-------CCSCEEEEG
T ss_pred ecCCcccCChhhcccccccchhhccccccccccccccccccccchhhhhhhhccccccCcccccccccCCCCCCceEEec
Confidence 9999999999999876444322 1257666677889999883 578999988764 45444446689999999
Q ss_pred CCCCCCCCCCCCCChhhhHHHHHhhcCCCCCC------------------------CCCC------------cCCCCCCC
Q 021677 203 LLNPERYTGYTGPSARRIWDAVYTENCPKWMA------------------------IVPA------------NPQTRPNP 246 (309)
Q Consensus 203 l~NPERyTGY~G~~A~rIW~aIY~ENCF~~~~------------------------~~~C------------LHaSIsiH 246 (309)
++||||||||+|++|+|||++||+||||++.+ +++| |||||+||
T Consensus 179 l~NPEryTGY~G~~A~rIW~aIY~ENCF~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ClEkrvFyRLISGLHaSIs~H 258 (465)
T 3ahq_A 179 LLNPERYTGYKGPDAWKIWNVIYEENCFKPQTIKRPLNPLASGQGTSEENTFYSWLEGLCVEKRAFYRLISGLHASINVH 258 (465)
T ss_dssp GGSCCCCCCCCHHHHHHHHHHHHTTCCBCC---------------------------CCCBCCHHHHHHHHHHHHHHHHH
T ss_pred ccCcCcccCCCCCcHHHHHHHHHHHhccCccccccccCccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998642 5789 99999999
Q ss_pred ccCC----C---CCCCCCChHHHHHHH------hhhccchhhHHHHHHHHHHHhhhhcccccceeeeeeeeeec
Q 021677 247 PAKT----R---PLRWGKNPELMYDRV------LRYQDRVRNLYFTFLFVLRAVTKVSISSCSFVLNIWVFYVG 307 (309)
Q Consensus 247 l~~~----~---~~~W~pNl~~F~~Rv------~~~PeRL~NLYF~YllvLRAl~Ka~p~~~nf~~~~~~fy~g 307 (309)
||++ . +|+|+||+++|++|| |+|||||+||||+|+||||||+||+|++.++- -.||||
T Consensus 259 l~~~Yl~~~~~~~~~W~pNl~~F~~R~~~~~t~G~~PeRl~NLYF~Y~lvLRAl~K~~p~l~~~~---y~~~tG 329 (465)
T 3ahq_A 259 LSARYLLQETWLEKKWGHNITEFQQRFDGILTEGEGPRRLKNLYFLYLIELRALSKVLPFFERPD---FQLFTG 329 (465)
T ss_dssp HHHTEEEEECSSCEEEECCHHHHHHHHCHHHHTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHSTT---CCCCCS
T ss_pred HHHHHhccccccCCCcCCCHHHHHHHhccccccCCChHHHHhHHHHHHHHHHHHHHhhhhhhhcc---ccccCC
Confidence 9998 3 899999999999997 57999999999999999999999999665321 114887
No 2
>3m31_A Endoplasmic oxidoreductin-1; disulfide mutant, disulfide bond, electron transport, endopl reticulum, FAD, flavoprotein, glycoprotein; HET: FAD; 1.85A {Saccharomyces cerevisiae} SCOP: a.227.1.1 PDB: 1rp4_A* 1rq1_A* 3nvj_A*
Probab=100.00 E-value=1.4e-76 Score=574.56 Aligned_cols=219 Identities=26% Similarity=0.519 Sum_probs=171.2
Q ss_pred ccccccCcccchHhHHhhhhhhhhHHHHHhhcCCcccEEeeeCCCCCCCCCC-CCCCCCCCcccccCCC-CCCCCCCCCC
Q 021677 70 YTGMVEDCCCDYETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFWPD-DGMCRLRDCSVCECPE-NEFPEPFKKP 147 (309)
Q Consensus 70 ~~G~VdDc~c~~etId~~N~~~i~P~L~~Lv~tdfFRyfKVNL~~~CPFW~d-d~~C~~~~C~V~~c~e-~eiP~~wr~~ 147 (309)
-+|.|. |++|+|||++|.+ |+|+|++||+|||||||||||+++||||+| +++|++++|+|++|++ ++||++||++
T Consensus 8 ~~~~~~--~~~~~~i~~~N~~-i~p~L~~L~~tdfFryfKVnL~k~CPFW~d~~~~C~~~~CaV~~cd~~~~iP~~w~~~ 84 (388)
T 3m31_A 8 SSGLVP--RGSFNELNAINEN-IRDDLSALLKSDFFKYFRLDLYKQCSFWDANDGLCLNRACSVDVVEDWDTLPEYWQPE 84 (388)
T ss_dssp ---------CHHHHHHHHHHH-HHHHHHHHTTSTTTSEEEEESCCCCSSSCCSSCCCCTTTTBCC----CTTSCGGGSHH
T ss_pred cCCCCC--CCCHHHHHHHHHH-HHHHHHHHhcCCCceeeeecCCCCCCCCCCcCCCCCCCCCeeeeCCCcccCchhhccc
Confidence 467775 5689999999987 899999999999999999999999999998 7999999999999997 9999999975
Q ss_pred C-CCCCCC--------ccccccCCCCcccccccchhhhcCccccCCCCcCCCCCCCCcceEeeCCCCCCCCCCCCCCChh
Q 021677 148 F-HILPSD--------DLMCQEGKPEATVDRTLDKRAFRGWIETDNPWTNDDETDNGEMTYVNLLLNPERYTGYTGPSAR 218 (309)
Q Consensus 148 ~-~~l~~~--------~~~c~~~~~~~~vd~tl~~~~~~~w~~~D~~~~~~De~d~~~~~YVDLl~NPERyTGY~G~~A~ 218 (309)
. +++... +..|.....+...+.++ .+...|+.||+.||+++++++||||++||||||||+|++|+
T Consensus 85 ~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~------~~~d~~~~~c~~dD~~~~~~~YVdLl~NPEryTGY~G~~a~ 158 (388)
T 3m31_A 85 ILGSFNNDTMKEADDSDDECKFLDQLAQTSKKP------VDIEDTINYCDVNDFNGKNAVLIDLTANPERFTGYGGKQAG 158 (388)
T ss_dssp HHTCCCTTTCEECCTTCGGGSBHHHHC-------------------CHHHHTTCCCTTEEEEETTTSCCCCCCBCHHHHH
T ss_pred cccCccccccccccccchhhhhhhhhccccccc------ccccCcCCeecccccCCCCceEeecccCCccccCCCCCchH
Confidence 4 333221 11222111111111111 01123456777666677899999999999999999999999
Q ss_pred hhHHHHHhhcCCCCCCCCCC------------cCCCCCCCccCC----CCCCCCCChHHHHHHHhhhccchhhHHHHHHH
Q 021677 219 RIWDAVYTENCPKWMAIVPA------------NPQTRPNPPAKT----RPLRWGKNPELMYDRVLRYQDRVRNLYFTFLF 282 (309)
Q Consensus 219 rIW~aIY~ENCF~~~~~~~C------------LHaSIsiHl~~~----~~~~W~pNl~~F~~Rv~~~PeRL~NLYF~Yll 282 (309)
+||++||+||||++..+++| |||||+||||++ .+|.|+||+++|++|||+|||||+||||+|+|
T Consensus 159 ~IW~aIY~ENCF~~~~~~~ClEkrvFyrLISGlHaSIs~Hl~~~yl~~~~~~w~pNl~~F~~R~g~~P~Rl~NLYF~Y~l 238 (388)
T 3m31_A 159 QIWSTIYQDNCFTIGETGESLAKDAFYRLVSGFHASIGTHLSKEYLNTKTGKWEPNLDLFMARIGNFPDRVTNMYFNYAV 238 (388)
T ss_dssp HHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSEECTTTCCEECCHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCCcccccHHHHHHHHHhhhhHHHHHHHHHHHHhCccCCCcCCCHHHHHHHHccchhHHHHHHHHHHH
Confidence 99999999999999888999 999999999998 67999999999999999999999999999999
Q ss_pred HHHHhhhhcccccce
Q 021677 283 VLRAVTKVSISSCSF 297 (309)
Q Consensus 283 vLRAl~Ka~p~~~nf 297 (309)
+||||+||+|++.+|
T Consensus 239 ~lRAl~K~~p~l~~~ 253 (388)
T 3m31_A 239 VAKALWKIQPYLPEF 253 (388)
T ss_dssp HHHHHHHHGGGCCCS
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999965543
No 3
>2wfu_A Probable insulin-like peptide 5 A chain; cleavage on PAIR of basic residues, signaling protein; 1.85A {Drosophila melanogaster}
Probab=33.05 E-value=9.4 Score=23.66 Aligned_cols=15 Identities=40% Similarity=1.336 Sum_probs=11.3
Q ss_pred ccccCcc---cchHhHHh
Q 021677 72 GMVEDCC---CDYETVDS 86 (309)
Q Consensus 72 G~VdDc~---c~~etId~ 86 (309)
|+||.|| |++..+++
T Consensus 1 GIVdeCC~~~Cs~~~L~~ 18 (26)
T 2wfu_A 1 GVVDSCCRNSCSFSTLRA 18 (26)
T ss_dssp CHHHHHTSSCBCHHHHHH
T ss_pred CcchhhcCCcCCHHHHHH
Confidence 7889988 77776654
No 4
>1pid_A Despentapeptide insulin; hormone, glucose metabolism; 1.30A {Bos taurus} SCOP: g.1.1.1 PDB: 1bph_A 1aph_A 1dph_A 1cph_A 2a3g_A 2bn1_A 2ins_A 2zp6_A 4e7t_A 4e7u_A 4e7v_A 2bn3_A 2qiu_A 2r34_A 2r35_A 2r36_A 1a7f_A 1ai0_A* 1aiy_A* 1b17_A ...
Probab=31.49 E-value=9.6 Score=23.65 Aligned_cols=15 Identities=40% Similarity=1.214 Sum_probs=11.2
Q ss_pred ccccCcc---cchHhHHh
Q 021677 72 GMVEDCC---CDYETVDS 86 (309)
Q Consensus 72 G~VdDc~---c~~etId~ 86 (309)
|+||.|| |++..+++
T Consensus 1 GIVdeCC~~~Cs~~~L~~ 18 (26)
T 1pid_A 1 GIVEQCCASVCSLYQLEN 18 (26)
T ss_dssp CHHHHHTTSCCCHHHHHT
T ss_pred CcchhhCCCcCCHHHHHH
Confidence 7889988 77766654
No 5
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=29.26 E-value=39 Score=28.93 Aligned_cols=32 Identities=25% Similarity=0.172 Sum_probs=20.3
Q ss_pred ccchhhhhhHHHHhhcCCcchHHHHHHHHHHHHhhhh
Q 021677 4 DKKRNDQISKEKKKKGLGRGLWSVWAVIVVLFATAAV 40 (309)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (309)
.++-...|-..||. |+.+.+++|++++++.+.
T Consensus 4 ~~~~~~~~~~~e~~-----w~~~~~~~~~~f~~~~~~ 35 (168)
T 3s8f_B 4 EHKAHKAILAYEKG-----WLAFSLAMLFVFIALIAY 35 (168)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 33444445555554 888888888888777444
No 6
>2rng_A BIG defensin; alpha-helices & beta-sheets, three disulfide bridges, antibiotic, antimicrobial, fungicide, secreted; NMR {Tachypleus tridentatus} PDB: 2rq2_A
Probab=28.39 E-value=8 Score=29.72 Aligned_cols=55 Identities=20% Similarity=0.225 Sum_probs=32.9
Q ss_pred cCCcchHHHHHHHHHHHHhhhhhcccCCccccccCCCCcccccCCCCCCccccccccCcccchHhHHhhhhh
Q 021677 19 GLGRGLWSVWAVIVVLFATAAVTTRTGSKIALFANNQTSCHCSSSSQDSVKYTGMVEDCCCDYETVDSVNGE 90 (309)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c~~~~~~~~~~~G~VdDc~c~~etId~~N~~ 90 (309)
++..|.|+|++.-+..|+.+.+..++ +++.+|-= --|--..-|++.|.+|..|+.
T Consensus 14 sp~V~~~Lv~~yGaaAVt~~~i~~~~--------~DshsCan---------nrGWCR~~Cfs~Ey~D~~~s~ 68 (79)
T 2rng_A 14 GPSVWAYLVALVGAAAVTAANIRRAS--------SDNHSCAG---------NRGWCRSKCFRHEYVDTYYSA 68 (79)
T ss_dssp CHHHHHHHHHHSCHHHHHHTTEEECS--------SSCCEETT---------TTEEEESSCCTTCEECTTTHH
T ss_pred CHHHHHHHHHHHhHHHHHHhheeecc--------CCcccccc---------cCCcccchhcceeeecccCCc
Confidence 35568888776555555554454442 34444431 245555567888888888764
No 7
>2wfv_A Probable insulin-like peptide 5 A chain; signaling protein, cleavage on PAIR of basic residues; 1.85A {Drosophila melanogaster}
Probab=26.86 E-value=12 Score=23.14 Aligned_cols=16 Identities=38% Similarity=1.248 Sum_probs=11.9
Q ss_pred cccccCcc---cchHhHHh
Q 021677 71 TGMVEDCC---CDYETVDS 86 (309)
Q Consensus 71 ~G~VdDc~---c~~etId~ 86 (309)
.|+||.|| |++..+++
T Consensus 3 rGIvdECC~~~Ct~~~L~~ 21 (26)
T 2wfv_A 3 RGVVDSCCRNSCSFSTLRA 21 (26)
T ss_dssp CHHHHHHTSSCBCHHHHHH
T ss_pred CcchhhhcCCcCCHHHHHH
Confidence 49999998 66666554
No 8
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=21.47 E-value=50 Score=30.52 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=11.1
Q ss_pred HHHHhhcCCcchHHHHHHHHHHHHh
Q 021677 13 KEKKKKGLGRGLWSVWAVIVVLFAT 37 (309)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (309)
-.+||++.+-++|+++++|++++.+
T Consensus 27 ~~kk~~~~~~~~~~~~~~l~~~~~~ 51 (263)
T 3vmt_A 27 PPKKKKSKRILLKILLTILIIIALF 51 (263)
T ss_dssp --------CCTTHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3456677777889777655555443
No 9
>2k72_A Matrix metalloproteinase-23; toxin, metalloprotease, MMP23, potassium channel, cleavage on PAIR of basic residues, glycoprotein, hydrolase; NMR {Synthetic}
Probab=20.57 E-value=11 Score=24.26 Aligned_cols=18 Identities=22% Similarity=0.672 Sum_probs=14.9
Q ss_pred eeCCCCCCCCCCCCCCCC
Q 021677 110 AKLWCDCPFWPDDGMCRL 127 (309)
Q Consensus 110 VNL~~~CPFW~dd~~C~~ 127 (309)
+|....|+||...|.|..
T Consensus 4 ~D~~~~C~~Wa~~G~C~~ 21 (37)
T 2k72_A 4 LDRIFVCTSWARKGFCDV 21 (37)
T ss_dssp CCCCSCHHHHHTTTTTTT
T ss_pred cCcchhhHHHHhCCccCC
Confidence 466789999999999874
No 10
>1igl_A Insulin-like growth factor II; NMR {Homo sapiens} SCOP: g.1.1.1 PDB: 2l29_B 2v5p_C* 3e4z_C 3kr3_D
Probab=20.13 E-value=36 Score=25.12 Aligned_cols=18 Identities=39% Similarity=1.101 Sum_probs=14.3
Q ss_pred ccccccCcc---cchHhHHhh
Q 021677 70 YTGMVEDCC---CDYETVDSV 87 (309)
Q Consensus 70 ~~G~VdDc~---c~~etId~~ 87 (309)
-.|+||.|| |++..+++-
T Consensus 39 ~rGIVdECC~~~Ct~~~L~~Y 59 (67)
T 1igl_A 39 SRGIVEECCFRSCDLALLETY 59 (67)
T ss_dssp CCCTTCCCCCSCCCSHHHHHH
T ss_pred cCCcHHHhcCCCCCHHHHHHH
Confidence 479999997 888877654
Done!