Citrus Sinensis ID: 021678

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
MMDFGYPQYTEANILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELRLI
cccccccccccHHHHHHcccccccccEEccccccccccccccccccccEEEcEEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEcccccEEEEEEccHHHHHHccccccccEEEcccccccccccccccccccEEEEEcccccEEEEEEEEcccccccEEEEEEEEEccccEEEEEEEEEEcccccccEEEEEEEccccccccccEEEEcccEEEEEccccEEEEEEcccccccEEEEEEEEEccccccccccccccccEEEEEEccEEEccccEEEEEEEEEcccccccccEEEEEEEccEEEEEc
ccccccccccHHHHHHHHHHHcccccccccccccHHcccEcccccccEEcccEEEHEHHHHHHEEEcccccEEEEHEEEEEEEEEEEccccccEcccccEEEEEcccccccccEEEEEccEEEEEEEEcccccccEEEEccccccEEEEEEEccccccccEEEEEEEEEccccEEEEEEEEEEEccccccccEEEEEEEccccccccEEEEEEEEEEEcccccEEEEEEEEcccccEEEEEEEEcccccccccccccccccEEEEEEEEEEEcccEEEEEEEEEcccccccccEEEEEEccccEEEEEc
mmdfgypqyteaNILSEFIKtdayrmevtqrppmavTNAVSWRsegiqykknevFLDVVEHVNILVNSNGQIIRSDVVGALKMRTylsgmpecklglndrILLEAqgrstkgkaidlddikfhQCVRLArfendrtisfippdgsfdlmTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQfkerstatnveielpvssdasnpdvrtsmgsasyvpedEALIWKIrsfpggkeymlraeftlpsitaeeatperkapirvkfeipyftvsGIQVRYLKIIEKsgyhalpwVRYITMAGEYELRLI
mmdfgypqyteaNILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILvnsngqiirsdVVGALKMRTYLSGMPECKLGLNDRILLEAQGRstkgkaidlddiKFHQCVRLarfendrtisfippdgsFDLMTYRLNTQVKPLIWVEAqverhsrsrvEILVKarsqfkerstatnveielpvssdasnpdvRTSMGsasyvpedeaLIWKIRSFPGGKEYMLRAEFTlpsitaeeatperkapirvkfeipyftvsgIQVRYLKIIEKsgyhalpwvrYITMAGEYELRLI
MMDFGYPQYTEANILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELRLI
*****YPQYTEANILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILV******************************************DEALIWKIRSFPGGKEYMLRAEFTLPSITA*******KAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYEL***
MMDFGYPQYTEANILSEFI************************SEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLN******************LDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFT***************PIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELRLI
MMDFGYPQYTEANILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELRLI
*MDFGYPQYTEANILSEFIKTDAY****TQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELRLI
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MMDFGYPQYTEANILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELRLI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query309 2.2.26 [Sep-21-2011]
P35602422 AP-1 complex subunit mu-1 yes no 0.987 0.722 0.642 1e-123
Q32Q06423 AP-1 complex subunit mu-1 yes no 0.983 0.718 0.646 1e-123
Q9BXS5423 AP-1 complex subunit mu-1 yes no 0.983 0.718 0.642 1e-123
Q2KJ81423 AP-1 complex subunit mu-1 yes no 0.983 0.718 0.642 1e-123
P35585423 AP-1 complex subunit mu-1 yes no 0.983 0.718 0.642 1e-123
Q3SYW1423 AP-1 complex subunit mu-2 no no 0.983 0.718 0.642 1e-120
Q9WVP1423 AP-1 complex subunit mu-2 no no 0.983 0.718 0.642 1e-120
Q9Y6Q5423 AP-1 complex subunit mu-2 no no 0.983 0.718 0.642 1e-120
Q54HS9428 AP-1 complex subunit mu O yes no 0.987 0.712 0.616 1e-115
Q9HFE5426 AP-1 complex subunit mu-1 yes no 0.993 0.720 0.563 1e-108
>sp|P35602|AP1M_CAEEL AP-1 complex subunit mu-1-I OS=Caenorhabditis elegans GN=unc-101 PE=2 SV=2 Back     alignment and function desciption
 Score =  441 bits (1135), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 198/308 (64%), Positives = 252/308 (81%), Gaps = 3/308 (0%)

Query: 1   MMDFGYPQYTEANILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVE 60
           MMDFG+PQ TE+ IL E+I  +  ++    RPPMAVTNAVSWRSEGI+Y+KNEVFLDV+E
Sbjct: 117 MMDFGFPQTTESRILQEYITQEGQKLISAPRPPMAVTNAVSWRSEGIKYRKNEVFLDVIE 176

Query: 61  HVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDI 120
            VN+L ++NG +++S++VG++KMR YL+GMPE +LGLND++L E  GR  K K+++L+D+
Sbjct: 177 SVNMLASANGTVLQSEIVGSVKMRVYLTGMPELRLGLNDKVLFEGSGRG-KSKSVELEDV 235

Query: 121 KFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVK 180
           KFHQCVRL+RF+ DRTISFIPPDG+F+LM+YRL T VKPLIW+E  +ERHS SRV  ++K
Sbjct: 236 KFHQCVRLSRFDTDRTISFIPPDGAFELMSYRLTTVVKPLIWIETSIERHSHSRVSFIIK 295

Query: 181 ARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYML 240
           A+SQFK RSTA NVEI +PV SDA +P  +TS+GS  Y PE  A +W I++FPGGKEY+L
Sbjct: 296 AKSQFKRRSTANNVEIIIPVPSDADSPKFKTSIGSVKYTPEQSAFVWTIKNFPGGKEYLL 355

Query: 241 RAEFTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITM 300
            A  +LPS+ +EE+  E + PI+VKFEIPYFT SGIQVRYLKIIEKSGY ALPWVRYIT 
Sbjct: 356 TAHLSLPSVMSEES--EGRPPIKVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQ 413

Query: 301 AGEYELRL 308
            GEYE+R+
Sbjct: 414 NGEYEMRM 421
Required for many aspects of development and behavior, including negative regulation of vulval differentiation.
Caenorhabditis elegans (taxid: 6239)
>sp|Q32Q06|AP1M1_RAT AP-1 complex subunit mu-1 OS=Rattus norvegicus GN=Ap1m1 PE=1 SV=3 Back     alignment and function description
>sp|Q9BXS5|AP1M1_HUMAN AP-1 complex subunit mu-1 OS=Homo sapiens GN=AP1M1 PE=1 SV=3 Back     alignment and function description
>sp|Q2KJ81|AP1M1_BOVIN AP-1 complex subunit mu-1 OS=Bos taurus GN=AP1M1 PE=1 SV=3 Back     alignment and function description
>sp|P35585|AP1M1_MOUSE AP-1 complex subunit mu-1 OS=Mus musculus GN=Ap1m1 PE=1 SV=3 Back     alignment and function description
>sp|Q3SYW1|AP1M2_BOVIN AP-1 complex subunit mu-2 OS=Bos taurus GN=AP1M2 PE=1 SV=3 Back     alignment and function description
>sp|Q9WVP1|AP1M2_MOUSE AP-1 complex subunit mu-2 OS=Mus musculus GN=Ap1m2 PE=1 SV=3 Back     alignment and function description
>sp|Q9Y6Q5|AP1M2_HUMAN AP-1 complex subunit mu-2 OS=Homo sapiens GN=AP1M2 PE=1 SV=4 Back     alignment and function description
>sp|Q54HS9|AP1M_DICDI AP-1 complex subunit mu OS=Dictyostelium discoideum GN=apm1 PE=1 SV=1 Back     alignment and function description
>sp|Q9HFE5|AP1M1_SCHPO AP-1 complex subunit mu-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apm1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query309
225470599 428 PREDICTED: AP-1 complex subunit mu-1 [Vi 1.0 0.721 0.928 1e-171
224107797 428 predicted protein [Populus trichocarpa] 1.0 0.721 0.922 1e-170
297843902 428 clathrin adaptor complexes medium subuni 1.0 0.721 0.915 1e-169
255573987309 clathrin coat assembly protein ap-1, put 1.0 1.0 0.922 1e-169
449434961 428 PREDICTED: AP-1 complex subunit mu-1-lik 1.0 0.721 0.922 1e-169
343172625 428 AP-1 complex subunit mu, partial [Silene 1.0 0.721 0.912 1e-169
449478746 428 PREDICTED: AP-1 complex subunit mu-1-lik 1.0 0.721 0.922 1e-169
297837421 428 clathrin adaptor complexes medium subuni 1.0 0.721 0.912 1e-169
15219810 428 AP-1 complex subunit mu [Arabidopsis tha 1.0 0.721 0.912 1e-169
255540561 428 clathrin coat assembly protein ap-1, put 1.0 0.721 0.912 1e-169
>gi|225470599|ref|XP_002274463.1| PREDICTED: AP-1 complex subunit mu-1 [Vitis vinifera] gi|296083422|emb|CBI23375.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 287/309 (92%), Positives = 302/309 (97%)

Query: 1   MMDFGYPQYTEANILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVE 60
           MMDFGYPQYTEA ILSEFIKTDAYRMEV+QRPPMAVTNAVSWRSEGI+YKKNEVFLDVVE
Sbjct: 120 MMDFGYPQYTEAKILSEFIKTDAYRMEVSQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVE 179

Query: 61  HVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDI 120
            VNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDR+LLEAQGRSTKGKAIDLDDI
Sbjct: 180 SVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDI 239

Query: 121 KFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVK 180
           KFHQCVRLARFENDRTISFIPPDGSFDLMTYRL+TQVKPLIWVEAQVERHSRSR+EI+VK
Sbjct: 240 KFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQVERHSRSRIEIMVK 299

Query: 181 ARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYML 240
           ARSQFKERSTATNVEIELPV SDA+NP++RTSMGSA+Y PE++AL+WKI+SFPGGKEYML
Sbjct: 300 ARSQFKERSTATNVEIELPVPSDATNPNIRTSMGSAAYAPENDALLWKIKSFPGGKEYML 359

Query: 241 RAEFTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITM 300
           RAEF+LPSITAEE  PERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGY ALPWVRYITM
Sbjct: 360 RAEFSLPSITAEEGAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITM 419

Query: 301 AGEYELRLI 309
           AGEYELRLI
Sbjct: 420 AGEYELRLI 428

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224107797|ref|XP_002314604.1| predicted protein [Populus trichocarpa] gi|222863644|gb|EEF00775.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297843902|ref|XP_002889832.1| clathrin adaptor complexes medium subunit family protein [Arabidopsis lyrata subsp. lyrata] gi|297335674|gb|EFH66091.1| clathrin adaptor complexes medium subunit family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255573987|ref|XP_002527911.1| clathrin coat assembly protein ap-1, putative [Ricinus communis] gi|223532686|gb|EEF34468.1| clathrin coat assembly protein ap-1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449434961|ref|XP_004135264.1| PREDICTED: AP-1 complex subunit mu-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|343172625|gb|AEL99016.1| AP-1 complex subunit mu, partial [Silene latifolia] gi|343172627|gb|AEL99017.1| AP-1 complex subunit mu, partial [Silene latifolia] Back     alignment and taxonomy information
>gi|449478746|ref|XP_004155408.1| PREDICTED: AP-1 complex subunit mu-1-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|297837421|ref|XP_002886592.1| clathrin adaptor complexes medium subunit family protein [Arabidopsis lyrata subsp. lyrata] gi|297332433|gb|EFH62851.1| clathrin adaptor complexes medium subunit family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15219810|ref|NP_176277.1| AP-1 complex subunit mu [Arabidopsis thaliana] gi|2462748|gb|AAB71967.1| putative Clathrin Coat Assembly protein [Arabidopsis thaliana] gi|20466372|gb|AAM20503.1| clathrin adaptor medium chain protein MU1B, putative [Arabidopsis thaliana] gi|25084014|gb|AAN72155.1| clathrin adaptor medium chain protein MU1B, putative [Arabidopsis thaliana] gi|332195610|gb|AEE33731.1| AP-1 complex subunit mu [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255540561|ref|XP_002511345.1| clathrin coat assembly protein ap-1, putative [Ricinus communis] gi|223550460|gb|EEF51947.1| clathrin coat assembly protein ap-1, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query309
TAIR|locus:2036606428 HAP13 "HAPLESS 13" [Arabidopsi 1.0 0.721 0.912 6.7e-152
TAIR|locus:2019913428 AT1G10730 [Arabidopsis thalian 1.0 0.721 0.860 9.9e-142
FB|FBgn0024833426 AP-1mu "Adaptor Protein comple 0.987 0.715 0.657 2.8e-114
UNIPROTKB|Q2KJ81423 AP1M1 "AP-1 complex subunit mu 0.983 0.718 0.642 5.9e-112
UNIPROTKB|J9P1I0423 AP1M1 "Uncharacterized protein 0.983 0.718 0.642 5.9e-112
UNIPROTKB|B4DDG7351 AP1M1 "AP-1 complex subunit mu 0.983 0.866 0.642 5.9e-112
UNIPROTKB|K7EJL1351 AP1M1 "AP-1 complex subunit mu 0.983 0.866 0.642 5.9e-112
UNIPROTKB|Q9BXS5423 AP1M1 "AP-1 complex subunit mu 0.983 0.718 0.642 5.9e-112
UNIPROTKB|F2Z5I7423 AP1M1 "Uncharacterized protein 0.983 0.718 0.642 5.9e-112
RGD|1307653423 Ap1m1 "adaptor-related protein 0.983 0.718 0.646 5.9e-112
TAIR|locus:2036606 HAP13 "HAPLESS 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1482 (526.7 bits), Expect = 6.7e-152, P = 6.7e-152
 Identities = 282/309 (91%), Positives = 300/309 (97%)

Query:     1 MMDFGYPQYTEANILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVE 60
             MMDFGYPQYTEA ILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDV+E
Sbjct:   120 MMDFGYPQYTEARILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVIE 179

Query:    61 HVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDI 120
             +VNILVNSNGQI+RSDVVGALKMRTYL+GMPECKLGLNDR+LLEAQGR+TKGKAIDL+DI
Sbjct:   180 NVNILVNSNGQIVRSDVVGALKMRTYLTGMPECKLGLNDRVLLEAQGRATKGKAIDLEDI 239

Query:   121 KFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVK 180
             KFHQCVRLARFENDRTISFIPPDG+FDLMTYRL+TQVKPLIWVEAQ+E HSRSRVE+L+K
Sbjct:   240 KFHQCVRLARFENDRTISFIPPDGAFDLMTYRLSTQVKPLIWVEAQIESHSRSRVEMLIK 299

Query:   181 ARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYML 240
             ARSQFKERSTATNVEIELPV +DASNP VRTS+GSASY PE +AL+WKI+SFPG KEYML
Sbjct:   300 ARSQFKERSTATNVEIELPVPTDASNPTVRTSLGSASYAPEKDALVWKIKSFPGNKEYML 359

Query:   241 RAEFTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITM 300
             RAEF LPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGY ALPWVRYITM
Sbjct:   360 RAEFHLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITM 419

Query:   301 AGEYELRLI 309
             AGEYELRL+
Sbjct:   420 AGEYELRLV 428
GO:0006810 "transport" evidence=IEA
GO:0006886 "intracellular protein transport" evidence=IEA;ISS
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0030125 "clathrin vesicle coat" evidence=ISS
GO:0030131 "clathrin adaptor complex" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2019913 AT1G10730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0024833 AP-1mu "Adaptor Protein complex 1, mu subunit" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KJ81 AP1M1 "AP-1 complex subunit mu-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J9P1I0 AP1M1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|B4DDG7 AP1M1 "AP-1 complex subunit mu-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|K7EJL1 AP1M1 "AP-1 complex subunit mu-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BXS5 AP1M1 "AP-1 complex subunit mu-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z5I7 AP1M1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1307653 Ap1m1 "adaptor-related protein complex 1, mu 1 subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P35585AP1M1_MOUSENo assigned EC number0.64280.98380.7186yesno
Q54HS9AP1M_DICDINo assigned EC number0.61660.98700.7126yesno
P35602AP1M_CAEELNo assigned EC number0.64280.98700.7227yesno
Q32Q06AP1M1_RATNo assigned EC number0.64610.98380.7186yesno
Q9BXS5AP1M1_HUMANNo assigned EC number0.64280.98380.7186yesno
Q2KJ81AP1M1_BOVINNo assigned EC number0.64280.98380.7186yesno
Q9HFE5AP1M1_SCHPONo assigned EC number0.56310.99350.7206yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00009485001
SubName- Full=Chromosome undetermined scaffold_235, whole genome shotgun sequence; (428 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00002570001
SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (903 aa)
    ••• 0.705
GSVIVG00028856001
SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (822 aa)
    ••• 0.564

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query309
cd09250268 cd09250, AP-1_Mu1_Cterm, C-terminal domain of medi 0.0
cd09258270 cd09258, AP-1_Mu1A_Cterm, C-terminal domain of med 1e-160
cd09259264 cd09259, AP-1_Mu1B_Cterm, C-terminal domain of med 1e-146
cd09251263 cd09251, AP-2_Mu2_Cterm, C-terminal domain of medi 1e-119
pfam00928228 pfam00928, Adap_comp_sub, Adaptor complexes medium 3e-94
cd09253271 cd09253, AP-4_Mu4_Cterm, C-terminal domain of medi 4e-85
cd07954239 cd07954, AP_MHD_Cterm, C-terminal domain of adapto 4e-77
cd09252248 cd09252, AP-3_Mu3_Cterm, C-terminal domain of medi 1e-58
cd09260254 cd09260, AP-3_Mu3A_Cterm, C-terminal domain of med 2e-34
cd09261254 cd09261, AP-3_Mu3B_Cterm, C-terminal domain of med 4e-33
cd09255308 cd09255, AP-like_stonins_MHD, Mu homology domain ( 9e-29
cd09263314 cd09263, AP_stonin-2_MHD, Mu homology domain (MHD) 8e-18
cd09262309 cd09262, AP_stonin-1_MHD, Mu homology domain (MHD) 1e-16
cd09256271 cd09256, AP_MuD_MHD, Mu-homology domain (MHD) of a 5e-09
>gnl|CDD|211361 cd09250, AP-1_Mu1_Cterm, C-terminal domain of medium Mu1 subunit in clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information 
 Score =  511 bits (1318), Expect = 0.0
 Identities = 197/268 (73%), Positives = 235/268 (87%), Gaps = 1/268 (0%)

Query: 37  TNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLG 96
           TNAVSWR EGI+YKKNEVFLDV+E VN+LV+ NGQ++RS++VG +KMR+YLSGMPE KLG
Sbjct: 1   TNAVSWRPEGIKYKKNEVFLDVIESVNLLVDLNGQVLRSEIVGTIKMRSYLSGMPELKLG 60

Query: 97  LNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQ 156
           LND++L EA GRS+KGKA++L+D+KFHQCVRL+RFENDRTISFIPPDG F+LM+YRL+TQ
Sbjct: 61  LNDKVLFEATGRSSKGKAVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLSTQ 120

Query: 157 VKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSA 216
           VKPLIWVE  VERHSRSRVEI+VKA++QFK RSTA NVEI +PV  DA +P  + S GS 
Sbjct: 121 VKPLIWVEPTVERHSRSRVEIMVKAKTQFKRRSTANNVEIRIPVPPDADSPRFKCSAGSV 180

Query: 217 SYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATP-ERKAPIRVKFEIPYFTVSG 275
            Y PE +AL+WKI+SFPGGKE+ +RAEF LPSI +EE    E+KAPI+VKFEIPYFTVSG
Sbjct: 181 VYAPEKDALLWKIKSFPGGKEFSMRAEFGLPSIESEEEQGTEKKAPIQVKFEIPYFTVSG 240

Query: 276 IQVRYLKIIEKSGYHALPWVRYITMAGE 303
           +QVRYLKIIEKSGY ALPWVRYIT +G+
Sbjct: 241 LQVRYLKIIEKSGYQALPWVRYITQSGD 268

AP complexes participate in the formation of intracellular coated transport vesicles and select cargo molecules for incorporation into the coated vesicles in the late secretory and endocytic pathways. There are four AP complexes, AP-1, AP-2, AP-3, and AP-4, described in various eukaryotic organisms. Each AP complex consists of four subunits: two large chains (one each of gamma/alpha/delta/epsilon and beta1-4, respectively), a medium mu chain (mu1-4), and a small sigma chain (sigma1-4). Each of the four subunits from the different AP complexes exhibits similarity with each other. This family corresponds to the C-terminal domain of heterotetrameric clathrin-associated adaptor protein complex 1 (AP-1) medium mu1 subunit, which includes two closely related homologs, mu1A (encoded by ap1m1) and mu1B (encoded by ap1m2). Mu1A is ubiquitously expressed, but mu1B is expressed exclusively in polarized epithelial cells. AP-1 has been implicated in bi-directional transport between the trans-Golgi network (TGN) and endosomes. It plays an essential role in the formation of clathrin-coated vesicles (CCVs) from the trans-Golgi network (TGN). Epithelial cell-specific AP-1 is also involved in sorting to the basolateral surface of polarized epithelial cells. Recruitment of AP-1 to the TGN membrane is regulated by a small GTPase, ADP-ribosylation factor 1 (ARF1). Phosphorylation/dephosphorylation events can also regulate the function of AP-1. The membrane-anchored cargo molecules can be linked to the outer lattice of CCVs by AP-1. Those cargo molecules interact with adaptors through short sorting signals in their cytosolic segments. Tyrosine-based endocytotic signals are one of the most important sorting signals. They are of the form Y-X-X-Phi, where Y is tyrosine, X is any amino acid and Phi is a bulky hydrophobic residue that can be Leu, Ile, Met, Phe, or Val. These kinds of sorting signals can be recognized by the C-terminal domain of AP-1 mu1 subunit, also known as Y-X-X-Phi signal-binding domain that contains two hydrophobic pockets, one for the tyrosine-binding and one for the bulky hydrophobic residue-binding. Length = 268
>gnl|CDD|211369 cd09258, AP-1_Mu1A_Cterm, C-terminal domain of medium Mu1A subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211370 cd09259, AP-1_Mu1B_Cterm, C-terminal domain of medium Mu1B subunit in epithelial cell-specific clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211362 cd09251, AP-2_Mu2_Cterm, C-terminal domain of medium Mu2 subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-2 Back     alignment and domain information
>gnl|CDD|216199 pfam00928, Adap_comp_sub, Adaptor complexes medium subunit family Back     alignment and domain information
>gnl|CDD|211364 cd09253, AP-4_Mu4_Cterm, C-terminal domain of medium Mu4 subunit in adaptor protein (AP) complex AP-4 Back     alignment and domain information
>gnl|CDD|211360 cd07954, AP_MHD_Cterm, C-terminal domain of adaptor protein (AP) complexes medium mu subunits and its homologs (MHD) Back     alignment and domain information
>gnl|CDD|211363 cd09252, AP-3_Mu3_Cterm, C-terminal domain of medium Mu3 subunit in adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|211371 cd09260, AP-3_Mu3A_Cterm, C-terminal domain of medium Mu3A subunit in ubiquitously expressed adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|211372 cd09261, AP-3_Mu3B_Cterm, C-terminal domain of medium Mu3B subunit in neuron-specific adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|211366 cd09255, AP-like_stonins_MHD, Mu homology domain (MHD) of adaptor-like proteins (AP-like), stonins Back     alignment and domain information
>gnl|CDD|211374 cd09263, AP_stonin-2_MHD, Mu homology domain (MHD) of adaptor-like protein (AP-like), stonin-2 Back     alignment and domain information
>gnl|CDD|211373 cd09262, AP_stonin-1_MHD, Mu homology domain (MHD) of adaptor-like protein (AP-like), stonin-1 (also called Stoned B-like factor) Back     alignment and domain information
>gnl|CDD|211367 cd09256, AP_MuD_MHD, Mu-homology domain (MHD) of a adaptor protein (AP) encoded by mu-2 related death-inducing gene, MuD (also known as MUDENG) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 309
KOG0938446 consensus Adaptor complexes medium subunit family 100.0
KOG0937424 consensus Adaptor complexes medium subunit family 100.0
PF00928262 Adap_comp_sub: Adaptor complexes medium subunit fa 100.0
KOG2740418 consensus Clathrin-associated protein medium chain 100.0
KOG2677922 consensus Stoned B synaptic vesicle biogenesis pro 100.0
KOG2635512 consensus Medium subunit of clathrin adaptor compl 99.96
PF10291257 muHD: Muniscin C-terminal mu homology domain; Inte 99.27
>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=8.1e-82  Score=560.31  Aligned_cols=305  Identities=44%  Similarity=0.778  Sum_probs=279.1

Q ss_pred             CCccccccccChhhhhccccCcceecccc----c-----CCC----CcccccccccccCccceeceEEEEEEEeEEEEEc
Q 021678            1 MMDFGYPQYTEANILSEFIKTDAYRMEVT----Q-----RPP----MAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVN   67 (309)
Q Consensus         1 m~D~G~p~~t~~~~L~~~i~~~~~~~~~~----~-----~~~----~~~~~~v~wR~~~~~~~~neI~vdV~E~l~~~~~   67 (309)
                      ||||||||+||+++|+.+|..+++..+-+    +     +.+    +..++.++||+.|++|++||+|+||.|++|..++
T Consensus       114 mld~G~pqnte~~al~~~is~~~Vrs~g~~ls~k~s~~sq~~~~~ssqv~G~i~WRr~Gi~ykknevfldvvErvNlLmS  193 (446)
T KOG0938|consen  114 MLDFGIPQNTEPNALKAQISQKGVRSMGGVLSSKSSPTSQATELRSSQVTGKIGWRREGIKYKKNEVFLDVVERVNLLMS  193 (446)
T ss_pred             HHhcCCCccCChhHHHhhhhhhhhhccccccCCcCCCCcccccccccccccccccccccceeccceeEeEehheeeeEEc
Confidence            79999999999999999999988876521    1     111    3346679999999999999999999999999999


Q ss_pred             cCCcEEEEEEEEEEEEEEEecCCCeEEEEEccchhhhhcCCC-------------CCCceeeecccccceeeccccccCC
Q 021678           68 SNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRS-------------TKGKAIDLDDIKFHQCVRLARFEND  134 (309)
Q Consensus        68 ~~G~v~~~~V~G~i~~~s~LsG~P~~~l~Ln~~~~~~~~~~~-------------~~~~~~~l~~~~fH~cV~~~~f~~~  134 (309)
                      ++|++++++|+|.|.|+++|||||+|+++|||...+++.+..             ++...+.|+||.||+||++++|+++
T Consensus       194 ~~GnVLrs~VsG~V~mk~~LSGmPeckfGlNDkl~~e~kq~esks~~~n~~~~sks~~g~v~leDc~FHqCV~L~kFn~e  273 (446)
T KOG0938|consen  194 SDGNVLRSDVSGTVDMKTHLSGMPECKFGLNDKLGMESKQSESKSDFGNKNFPSKSGKGSVLLEDCTFHQCVRLDKFNSE  273 (446)
T ss_pred             CCCCEEEeecccEEEEEEeccCCcccccccCcccceeeccccccccccccCCCcccCCceEEeeccchheeecccccccc
Confidence            999999999999999999999999999999999877633211             2445688999999999999999999


Q ss_pred             ceEEEeCCCCcEEEEEEEecCCCcCcEEEEEEEEECcCeEEEEEEEEeecCCCcceeeeEEEEecCCCCCCCceEEecce
Q 021678          135 RTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMG  214 (309)
Q Consensus       135 ~~l~F~PPdG~F~Lm~Yr~~~~~~pp~~v~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~v~i~iPlP~~~~~~~~~~~~G  214 (309)
                      +.|+|+||||+|+||+||+..++..||.|.|.+++.+.+++||++++++.|++++.+.+|.++||+|+++..+.++++.|
T Consensus       274 h~IsFvPPDGe~ELMkYr~~enInlPFrV~PiV~el~r~kie~ri~iks~f~~kl~a~~v~~rIPvP~ntv~~n~~v~~G  353 (446)
T KOG0938|consen  274 HIISFVPPDGEFELMKYRVTENINLPFRVTPIVTELGRTKIEYRITIKSLFPPKLLAKDVVVRIPVPPNTVKCNISVSNG  353 (446)
T ss_pred             ceEEEeCCCCceEeEeeeeccCcccceEeeeheecccceeEEEEEEEeccCCchhhhcceEEEecCCCccccceeEEecC
Confidence            99999999999999999999999888999999998888899999999999999999999999999999999999999999


Q ss_pred             eEEEeCCCCEEEEEeceeCCCCeeEEEEEEEecCCC-CCCCCCCCCCcEEEEEEECcccccceEEEEEEEEE-cCCCccc
Q 021678          215 SASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSIT-AEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIE-KSGYHAL  292 (309)
Q Consensus       215 ~~~~~~~~~~l~W~I~~~~g~~~~~l~~~~~l~~~~-~~~~~~~~~~pi~v~F~ip~~s~SGl~V~~l~v~~-~~~~~~~  292 (309)
                      +++|.+++++++|+|+++.|.+|.++++++++.+.. +...|  ..+||+++|++||++.|||.|++++|.+ +++|+..
T Consensus       354 kaky~psen~ivWki~kf~G~tE~tlsAevels~Tt~nkq~W--trPPIsleFeV~MFt~SGL~VrylkV~e~~Sk~~~v  431 (446)
T KOG0938|consen  354 KAKYVPSENAIVWKINKFNGLTESTLSAEVELSDTTQNKQQW--TRPPISLEFEVPMFTNSGLVVRYLKVSEKDSKHRAV  431 (446)
T ss_pred             ccccCcccceEEEEecccCCcccceeEEEEEeccCccccccc--cCCCceeEEeeeeecCCceEEEEEEEecccCCCceE
Confidence            999999999999999999999999999999997765 44457  8899999999999999999999999999 5889999


Q ss_pred             cceEEEEEeccEEEE
Q 021678          293 PWVRYITMAGEYELR  307 (309)
Q Consensus       293 k~vrY~t~sg~Y~~R  307 (309)
                      |||||+|+||+||+|
T Consensus       432 kWVrYitkaGsyEiR  446 (446)
T KOG0938|consen  432 KWVRYITKAGSYEIR  446 (446)
T ss_pred             EEEEEecccceeeeC
Confidence            999999999999998

>KOG0937 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00928 Adap_comp_sub: Adaptor complexes medium subunit family; InterPro: IPR008968 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2677 consensus Stoned B synaptic vesicle biogenesis protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10291 muHD: Muniscin C-terminal mu homology domain; InterPro: IPR018808 The muniscins are a family of endocytic adaptors that is conserved from yeast to humans Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query309
1w63_M423 Ap1 Clathrin Adaptor Core Length = 423 1e-124
4en2_M266 Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain 1e-110
4emz_A266 Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain 1e-107
2bp5_M435 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 5e-64
2xa7_M446 Ap2 Clathrin Adaptor Core In Active Complex With Ca 1e-62
1bw8_A321 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 8e-60
1i31_A314 Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor, 9e-60
1bxx_A285 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 2e-58
2pr9_A299 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 2e-58
1h6e_A288 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 2e-56
3ml6_A385 A Complex Between Dishevlled2 And Clathrin Adaptor 2e-53
3l81_A301 Crystal Structure Of Adaptor Protein Complex 4 (Ap- 4e-30
4ikn_A261 Crystal Structure Of Adaptor Protein Complex 3 (ap- 4e-30
>pdb|1W63|M Chain M, Ap1 Clathrin Adaptor Core Length = 423 Back     alignment and structure 
Iteration: 1

 Score =  441 bits (1135), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 198/308 (64%), Positives = 256/308 (83%), Gaps = 4/308 (1%)
Query: 1   MMDFGYPQYTEANILSEFIKTDAYRMEV-TQRPPMAVTNAVSWRSEGIQYKKNEVFLDVV 59
           +MDFGYPQ T++ IL EFI  + +++E    RPP  VTNAVSWRSEGI+Y+KNEVFLDV+
Sbjct: 117 LMDFGYPQTTDSKILQEFITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVI 176
Query: 60  EHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDD 119
           E VN+LV++NG ++RS++VG++KMR +LSGMPE +LGLND++L +  GR  K K+++L+D
Sbjct: 177 EAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRG-KSKSVELED 235
Query: 120 IKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILV 179
           +KFHQCVRL+RFENDRTISFIPPDG F+LM+YRLNT VKPLIW+E+ +E+HS SR+E +V
Sbjct: 236 VKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMV 295
Query: 180 KARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYM 239
           KA+SQFK RSTA NVEI +PV +DA +P  +T++GS  +VPE+  ++W ++SFPGGKEY+
Sbjct: 296 KAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSVKSFPGGKEYL 355
Query: 240 LRAEFTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYIT 299
           +RA F LPS+ AE+   E K PI VKFEIPYFT SGIQVRYLKIIEKSGY A+PWVRYIT
Sbjct: 356 MRAHFGLPSVEAEDK--EGKPPISVKFEIPYFTTSGIQVRYLKIIEKSGYQAIPWVRYIT 413
Query: 300 MAGEYELR 307
             G+Y+LR
Sbjct: 414 QNGDYQLR 421
>pdb|4EN2|M Chain M, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1 Adaptin Subunit Of Ap1 Adaptor (Second Domain) Length = 266 Back     alignment and structure
>pdb|4EMZ|A Chain A, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1 Adaptin Subunit Of Ap1 Adaptor (Second Domain) Length = 266 Back     alignment and structure
>pdb|2BP5|M Chain M, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Non-Canonical Internalization Peptide Vedyeqglsg Length = 435 Back     alignment and structure
>pdb|2XA7|M Chain M, Ap2 Clathrin Adaptor Core In Active Complex With Cargo Peptides Length = 446 Back     alignment and structure
>pdb|1BW8|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Egfr Internalization Peptide Fyralm Length = 321 Back     alignment and structure
>pdb|1I31|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor, Complexed With Egfr Internalization Peptide Fyralm At 2.5 A Resolution Length = 314 Back     alignment and structure
>pdb|1BXX|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Tgn38 Internalization Peptide Dyqrln Length = 285 Back     alignment and structure
>pdb|2PR9|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Gabaa Receptor-Gamma2 Subunit-Derived Internalization Peptide Deeygyecl Length = 299 Back     alignment and structure
>pdb|1H6E|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Ctla-4 Internalization Peptide Ttgvyvkmppt Length = 288 Back     alignment and structure
>pdb|3ML6|A Chain A, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2 Length = 385 Back     alignment and structure
>pdb|3L81|A Chain A, Crystal Structure Of Adaptor Protein Complex 4 (Ap-4) Mu4 Su Terminal Domain, In Complex With A Sorting Peptide From The Precursor Protein (App) Length = 301 Back     alignment and structure
>pdb|4IKN|A Chain A, Crystal Structure Of Adaptor Protein Complex 3 (ap-3) Mu3a Subunit C- Terminal Domain, In Complex With A Sorting Peptide From Tgn38 Length = 261 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query309
1i31_A314 Clathrin coat assembly protein AP50; beta-sandwich 1e-101
4en2_M266 AP-1 complex subunit MU-1; human immunodeficiency 4e-98
3l81_A301 AP-4 complex subunit MU-1; immunoglobulin-like bet 1e-96
1w63_M423 Adaptor-related protein complex 1, MU 1 subunit; e 4e-96
2vgl_M435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 3e-94
3ml6_A385 Chimeric complex between protein dishevlled2 HOMO 1e-92
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A Length = 314 Back     alignment and structure
 Score =  299 bits (766), Expect = e-101
 Identities = 120/316 (37%), Positives = 180/316 (56%), Gaps = 19/316 (6%)

Query: 8   QYTEANILSEFIKTDAYRMEV-----TQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHV 62
           Q +E   L  FI     + +        +    VT  + WR EGI+Y++NE+FLDV+E V
Sbjct: 1   QNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESV 60

Query: 63  NILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRST-------KGKAI 115
           N+L++  GQ++ + V G + M++YLSGMPECK G+ND+I++E QG+ T         ++I
Sbjct: 61  NLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSI 120

Query: 116 DLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRV 175
            +DD  FHQCVRL++F+++R+ISFIPPDG F+LM YR    +     V   V    R+++
Sbjct: 121 AIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKL 180

Query: 176 EILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGG 235
           E+ V  +S FK    A  +E+ +P   + S   V    G A Y   + A++WKI+   G 
Sbjct: 181 EVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGM 240

Query: 236 KEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEK----SGYHA 291
           KE  + AE  L     ++     + PI + FE+P F  SG++VRYLK+ E     S +  
Sbjct: 241 KESQISAEIELLPTNDKK--KWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDV 297

Query: 292 LPWVRYITMAGEYELR 307
           + WVRYI  +G YE R
Sbjct: 298 IKWVRYIGRSGIYETR 313
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A Length = 266 Back     alignment and structure
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} Length = 301 Back     alignment and structure
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 423 Back     alignment and structure
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Length = 435 Back     alignment and structure
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Length = 385 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query309
1i31_A314 Clathrin coat assembly protein AP50; beta-sandwich 100.0
2vgl_M435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 100.0
1w63_M423 Adaptor-related protein complex 1, MU 1 subunit; e 100.0
4en2_M266 AP-1 complex subunit MU-1; human immunodeficiency 100.0
3ml6_A385 Chimeric complex between protein dishevlled2 HOMO 100.0
3l81_A301 AP-4 complex subunit MU-1; immunoglobulin-like bet 100.0
3g9h_A328 Suppressor of yeast profilin deletion; SYP1, MU, a 99.16
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A Back     alignment and structure
Probab=100.00  E-value=4.6e-79  Score=564.76  Aligned_cols=298  Identities=40%  Similarity=0.753  Sum_probs=237.0

Q ss_pred             cccChhhhhccccCcceeccc-----ccCCCCcccccccccccCccceeceEEEEEEEeEEEEEccCCcEEEEEEEEEEE
Q 021678            8 QYTEANILSEFIKTDAYRMEV-----TQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALK   82 (309)
Q Consensus         8 ~~t~~~~L~~~i~~~~~~~~~-----~~~~~~~~~~~v~wR~~~~~~~~neI~vdV~E~l~~~~~~~G~v~~~~V~G~i~   82 (309)
                      |+||+++||+||.++++..+.     +..+|++.+++++||+.|++|++|||||||+|+|+++++++|.+++++|.|.|.
T Consensus         1 q~te~~~Lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~WR~~gi~y~~NEi~vdV~E~v~~~i~~~G~v~~~eV~G~I~   80 (314)
T 1i31_A            1 QNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVV   80 (314)
T ss_dssp             -------------------------------------CTTSCSCCCCSSCEEEEEEEEEEEEEECSSCCEEEEEEEEEEE
T ss_pred             CcCChHHHHHhhcCCCeeccccccccccCCCccccCCCCCCccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEE
Confidence            789999999999999986532     335667788999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCCeEEEEEccchhhhhcCCC-------CCCceeeecccccceeeccccccCCceEEEeCCCCcEEEEEEEecC
Q 021678           83 MRTYLSGMPECKLGLNDRILLEAQGRS-------TKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNT  155 (309)
Q Consensus        83 ~~s~LsG~P~~~l~Ln~~~~~~~~~~~-------~~~~~~~l~~~~fH~cV~~~~f~~~~~l~F~PPdG~F~Lm~Yr~~~  155 (309)
                      |+|+|+|||+|+|+||+...++..+..       ....++.|+||+|||||++++|+++|+|+|+||||+|+||+||++.
T Consensus        81 ~~~~LsG~P~l~l~Ln~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~FHpcV~l~~f~~~r~IsFiPPDG~F~Lm~Yr~~~  160 (314)
T 1i31_A           81 MKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTK  160 (314)
T ss_dssp             EEEECSSSCEEEEEESCCC-----------------CCCCCCSEEEECTTSBCC----CCCEEECCCSEEEEEEEEEECS
T ss_pred             EEEEcCCCCeEEEEECCchhccccccccccccccccCCceEcccccccccccHHHcCCcceEEEECCCCCeEEEEEEecC
Confidence            999999999999999998665433211       0124677999999999999999999999999999999999999998


Q ss_pred             CCcCcEEEEEEEEECcCeEEEEEEEEeecCCCcceeeeEEEEecCCCCCCCceEEecceeEEEeCCCCEEEEEeceeCCC
Q 021678          156 QVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGG  235 (309)
Q Consensus       156 ~~~pp~~v~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~v~i~iPlP~~~~~~~~~~~~G~~~~~~~~~~l~W~I~~~~g~  235 (309)
                      ...+||.+.|+++..+++++||+++++++|+.+..++||.|+||+|.++..+.++++.|+++|++++++++|+|++++|+
T Consensus       161 ~~~lP~~v~~~~~~~g~~~iE~~l~~~~~~~~~~~~~nV~I~IP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~I~~i~g~  240 (314)
T 1i31_A          161 DIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGM  240 (314)
T ss_dssp             SCCCCEEEEEEEEEETTTEEEEEEEEEECSCTTCEEEEEEEEEECCTTEEEEEEECSSSEEEEEGGGTEEEEEEEEEESS
T ss_pred             CcCCCEEEEEEEEecCCcEEEEEEEEccCCCCcceeeEEEEEEECCCCcccceEEecCceEEEecCCCEEEEEeCcCCCC
Confidence            88889999999998666799999999999999889999999999999988999999999999999999999999999999


Q ss_pred             CeeEEEEEEEecCCCCCCCCCCCCCcEEEEEEECcccccceEEEEEEEEEc----CCCccccceEEEEEeccEEEEe
Q 021678          236 KEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEK----SGYHALPWVRYITMAGEYELRL  308 (309)
Q Consensus       236 ~~~~l~~~~~l~~~~~~~~~~~~~~pi~v~F~ip~~s~SGl~V~~l~v~~~----~~~~~~k~vrY~t~sg~Y~~R~  308 (309)
                      ++++++|+++|.+......+  .++||+|+|++| +++|||+|++|+|.++    ++|+|+|||||+|+||+|++|+
T Consensus       241 ~e~~l~~~~~l~s~~~~~~~--~~~pi~v~F~ip-~t~Sgl~V~~l~v~e~~~~~~~y~~~kwVrYit~sg~y~~R~  314 (314)
T 1i31_A          241 KESQISAEIELLPTNDKKKW--ARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC  314 (314)
T ss_dssp             EEEEEEEEEEECCCCSSSCC--CCCCEEEEEEES-SCTTCCCEEEEEEECSSSSCCGGGCEEEEEEEEEEEEEEECC
T ss_pred             CcEEEEEEEEecCCCcCCcc--CCCcEEEEEEEe-ecccCcEEEEEEEeccccccCCCCccCceEEEEeCCeEEEcC
Confidence            99999999999875422334  799999999999 9999999999999985    5899999999999999999996
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Back     alignment and structure
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A Back     alignment and structure
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Back     alignment and structure
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} Back     alignment and structure
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 309
d2pr9a1277 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin s 1e-102
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 277 Back     information, alignment and structure

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  297 bits (762), Expect = e-102
 Identities = 112/279 (40%), Positives = 169/279 (60%), Gaps = 14/279 (5%)

Query: 40  VSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLND 99
           + WR EGI+Y++NE+FLDV+E VN+L++  GQ++ + V G + M++YLSGMPECK G+ND
Sbjct: 1   IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMND 60

Query: 100 RILLEAQGRS-------TKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYR 152
           +I++E QG+        +  ++I +DD  FHQCVRL++F+++R+ISFIPPDG F+LM YR
Sbjct: 61  KIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYR 120

Query: 153 LNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTS 212
               +     V   V    R+++E+ V  +S FK    A  +E+ +P   + S   V   
Sbjct: 121 TTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICM 180

Query: 213 MGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFT 272
            G A Y   + A++WKI+   G KE  + AE  L     ++     + PI + FE+P F 
Sbjct: 181 KGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKK--KWARPPISMNFEVP-FA 237

Query: 273 VSGIQVRYLKIIEK----SGYHALPWVRYITMAGEYELR 307
            SG++VRYLK+ E     S +  + WVRYI  +G YE R
Sbjct: 238 PSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 276

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query309
d2pr9a1277 Second domain of Mu2 adaptin subunit (ap50) of ap2 100.0
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=8.4e-71  Score=500.04  Aligned_cols=266  Identities=42%  Similarity=0.809  Sum_probs=234.7

Q ss_pred             ccccccCccceeceEEEEEEEeEEEEEccCCcEEEEEEEEEEEEEEEecCCCeEEEEEccchhhhhcCC-------CCCC
Q 021678           40 VSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGR-------STKG  112 (309)
Q Consensus        40 v~wR~~~~~~~~neI~vdV~E~l~~~~~~~G~v~~~~V~G~i~~~s~LsG~P~~~l~Ln~~~~~~~~~~-------~~~~  112 (309)
                      ||||+.|++|++|||||||+|+|+++++++|.++.++|+|+|.|+|+|+|+|+|+|+||++..++....       .+..
T Consensus         1 i~WR~~~i~y~~NEi~vDV~E~i~~~~~~~G~~~~~~V~G~I~~~s~LsG~P~~~l~Ln~~~~~~~~~~~~~~~~~~~~~   80 (277)
T d2pr9a1           1 IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGK   80 (277)
T ss_dssp             CTTSCSCCCCSSCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECSSSCEEEEEESBC------------------C
T ss_pred             CCccCCCCcccCCEEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEecCCCCeEEEEecchhhccccccccccccccccc
Confidence            689999999999999999999999999999999999999999999999999999999999876554321       1245


Q ss_pred             ceeeecccccceeeccccccCCceEEEeCCCCcEEEEEEEecCCCcCcEEEEEEEEECcCeEEEEEEEEeecCCCcceee
Q 021678          113 KAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTAT  192 (309)
Q Consensus       113 ~~~~l~~~~fH~cV~~~~f~~~~~l~F~PPdG~F~Lm~Yr~~~~~~pp~~v~~~~~~~~~~~ve~~l~~~~~~~~~~~~~  192 (309)
                      .++.|+||+||+|||++.|+++|.|+|+||||+|+||+||+.....+|+.+.++++..+++++|++++++++++.+..++
T Consensus        81 ~~~~l~d~~fH~cV~~~~f~~~~~i~F~PPdG~F~Lm~Y~~~~~~~~P~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~~  160 (277)
T d2pr9a1          81 QSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQ  160 (277)
T ss_dssp             CCBCCSEEEECTTSBCC-----CCEEECCCSEEEEEEEEEECSSCCCCEEEEEEEEEETTTEEEEEEEEEECSCTTCEEE
T ss_pred             CceEccceeeeeccccccccccceEeecCCCCcEEEEEEEcCCCcCCCcEEEEEEEeccCcEEEEEEEEEeccCCCeeee
Confidence            67889999999999999999999999999999999999999888888889999998877778999999999999999999


Q ss_pred             eEEEEecCCCCCCCceEEecceeEEEeCCCCEEEEEeceeCCCCeeEEEEEEEecCCCCCCCCCCCCCcEEEEEEECccc
Q 021678          193 NVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFT  272 (309)
Q Consensus       193 ~v~i~iPlP~~~~~~~~~~~~G~~~~~~~~~~l~W~I~~~~g~~~~~l~~~~~l~~~~~~~~~~~~~~pi~v~F~ip~~s  272 (309)
                      ||.|+||+|..+..++++++.|+++|+.++++++|+|++++++++++|+|++++.+..+...+  .++||+|+|+|| ++
T Consensus       161 ~v~I~iP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~I~k~~~~~~~~l~~~~~~~~~~~~~~~--~~~pi~v~F~ip-~t  237 (277)
T d2pr9a1         161 KIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKW--ARPPISMNFEVP-FA  237 (277)
T ss_dssp             EEEEEEECCTTEEEEEEEESSSEEEEEGGGTEEEEEEEEEETTCEEEEEEEEEECCCCSSSCC--CCCCEEEEEEES-SC
T ss_pred             EEEEEeeCCCcccCceEEecCceEEEeccCCEEEEecccccCCccceEEEEEEeccCCCCccc--cCCcEEEEEEec-cc
Confidence            999999999998889999999999999999999999999999999999999999876654444  789999999999 89


Q ss_pred             ccceEEEEEEEEEc----CCCccccceEEEEEeccEEEEe
Q 021678          273 VSGIQVRYLKIIEK----SGYHALPWVRYITMAGEYELRL  308 (309)
Q Consensus       273 ~SGl~V~~l~v~~~----~~~~~~k~vrY~t~sg~Y~~R~  308 (309)
                      +|||+|++|+|.++    ++|+|+|||||+|+||+|+||.
T Consensus       238 ~Sgl~V~~l~v~~~~~~~~~~~~~k~vrY~t~sg~Y~~R~  277 (277)
T d2pr9a1         238 PSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC  277 (277)
T ss_dssp             TTCCCEEEEEEECSSSSCCGGGSEEEEEEEEEEEEEEECC
T ss_pred             ccceEEEEEEEeccccCCCCCCCCCCEEEEEECCCEEECC
Confidence            99999999999873    4689999999999999999994