BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021680
(309 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XMB|A Chain A, X-ray Structure Of Iaa-aminoacid Hydrolase From
Arabidopsis Thaliana Gene At5g56660
pdb|2Q43|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Iaa-Aminoacid Hydrolase From Arabidopsis Thaliana Gene
At5g56660
Length = 418
Score = 389 bits (998), Expect = e-108, Method: Compositional matrix adjust.
Identities = 189/311 (60%), Positives = 239/311 (76%), Gaps = 7/311 (2%)
Query: 1 MHACGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGGGGAKKMLDAGALENVEAI 60
MHACGHD HV MLLGAAK+L RH ++GT+VL+FQPAEEG GAKKM + GAL+NVEAI
Sbjct: 113 MHACGHDGHVTMLLGAAKILHEHRHHLQGTVVLIFQPAEEGLSGAKKMREEGALKNVEAI 172
Query: 61 FGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQ 120
FG+H+S+ P G ASR G LA G FEAVI GKGGHAAIPQHTIDP+VAAS++++SLQ
Sbjct: 173 FGIHLSARIPFGKAASRAGSFLAGAGVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQ 232
Query: 121 HLVSREADPLDSQVLTVAKFEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVVMK 180
LVSRE DPLDS+V+TV+K GG AFN+IPDS+TIGGT RAF+ QL+QR++EV+ K
Sbjct: 233 QLVSRETDPLDSKVVTVSKVNGGNAFNVIPDSITIGGTLRAFT--GFTQLQQRVKEVITK 290
Query: 181 QASVQRCNATV--TFDDKSFYPVTVNNKNLHEHFQKVAADMLGVQNIKENRPLMGTEDFS 238
QA+V RCNA+V T + + P TVNNK+L++ F+KV D+LG + E P+MG+EDFS
Sbjct: 291 QAAVHRCNASVNLTPNGREPMPPTVNNKDLYKQFKKVVRDLLGQEAFVEAAPVMGSEDFS 350
Query: 239 FFAEAIPGYFYYLGMNDETKGKFETGHSPYFRVNEDALPYGAALHASLATRYLLENQPKT 298
+FAE IPG+F LGM DET G + + HSP +R+NED LPYGAA+HAS+A +YL E K
Sbjct: 351 YFAETIPGHFSLLGMQDETNG-YASSHSPLYRINEDVLPYGAAIHASMAVQYLKEKASKG 409
Query: 299 TLASRSLHDEL 309
+++ H+EL
Sbjct: 410 SVS--GFHEEL 418
>pdb|1YSJ|A Chain A, Crystal Structure Of Bacillus Subtilis Yxep Protein
(Apc1829), A Dinuclear Metal Binding Peptidase From M20
Family
pdb|1YSJ|B Chain B, Crystal Structure Of Bacillus Subtilis Yxep Protein
(Apc1829), A Dinuclear Metal Binding Peptidase From M20
Family
Length = 404
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/292 (39%), Positives = 158/292 (54%), Gaps = 13/292 (4%)
Query: 2 HACGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGGGGAKKMLDAGALENVEAIF 61
HACGHD H A ++G A +L R E+KGT+ +FQPAEE GA+K+L+AG L V AIF
Sbjct: 120 HACGHDFHTASIIGTAXLLNQRRAELKGTVRFIFQPAEEIAAGARKVLEAGVLNGVSAIF 179
Query: 62 GLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQH 121
G H PVGT+ + GP A+ FE VI GKGGHA+IP ++IDPI AA +I LQ
Sbjct: 180 GXHNKPDLPVGTIGVKEGPLXASVDRFEIVIKGKGGHASIPNNSIDPIAAAGQIISGLQS 239
Query: 122 LVSREADPLDSQVLTVAKFEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVVMKQ 181
+VSR L + V+++ + + G ++N+IPD GT R F KE+ +Q + E +
Sbjct: 240 VVSRNISSLQNAVVSITRVQAGTSWNVIPDQAEXEGTVRTFQKEA----RQAVPEHXRRV 295
Query: 182 ASVQRCNATVTFDDKSF-YPVTVNNKNLHEHFQKVAADMLGVQNI-KENRPLMGTEDFSF 239
A + K F Y +V N + AA LG Q + E P G EDF+
Sbjct: 296 AEGIAAGYGAQAEFKWFPYLPSVQNDGTFLNAASEAAARLGYQTVHAEQSP--GGEDFAL 353
Query: 240 FAEAIPGYFYYLGMNDETKGKFETGHSPYFRVNEDALPYGAALHASLATRYL 291
+ E IPG+F + G N E H P F ++E+AL + A LA L
Sbjct: 354 YQEKIPGFFVWXGTNGT-----EEWHHPAFTLDEEALTVASQYFAELAVIVL 400
>pdb|4EWT|A Chain A, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|C Chain C, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|D Chain D, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|B Chain B, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
Length = 392
Score = 165 bits (417), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 149/295 (50%), Gaps = 10/295 (3%)
Query: 1 MHACGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GGGGAKKMLDAGALENVEA 59
MHACGHDAH A +L A+ L + G +V++ QPAEE GGAK M++ G L+ V+
Sbjct: 100 MHACGHDAHTAYMLVLAETLAEMKDSFTGKVVVIHQPAEEVPPGGAKTMIENGVLDGVDH 159
Query: 60 IFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSL 119
+ G+HV S G V RPG FF+ + GKGGH + P D IVA S + +L
Sbjct: 160 VLGVHVMSTMKTGKVYYRPGYVQTGRAFFKLKVQGKGGHGSSPHMANDAIVAGSYFVTAL 219
Query: 120 QHLVSREADPLDSQVLTVAKFEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVVM 179
Q +VSR P ++ V+T+ F+G G FN+I D V I G R + + +++ I+ +
Sbjct: 220 QTVVSRRLSPFETGVVTIGSFDGKGQFNVIKDVVEIEGDVRGLTDATKATIEKEIKRLSK 279
Query: 180 KQASVQRCNATVTFDDKSFYPVTVNNKNLHEHFQKVAADM---LGVQNIKENRPLMGTED 236
+ T+ ++D YP N+ E+ K + GV+ + P +ED
Sbjct: 280 GLEDMYGVTCTLEYNDD--YPALYNDPEFTEYVAKTLKEANLDFGVEMCEPQPP---SED 334
Query: 237 FSFFAEAIPGYFYYLGMNDETKGKFETGHSPYFRVNEDALPYGAALHASLATRYL 291
F+++A+ P F Y G E G+ H P F ++E +L A ++ YL
Sbjct: 335 FAYYAKERPSAFIYTGAAVEN-GEIYPHHHPKFNISEKSLLISAEAVGTVVLDYL 388
>pdb|3IO1|A Chain A, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
pdb|3IO1|B Chain B, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
Length = 445
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 2 HACGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGGGGAKKMLDAGALENVEAIF 61
HACGHD H A+ LG A +L+ + ++ G I L+FQPAEEG GA+ + AG +++V+
Sbjct: 147 HACGHDGHTAIGLGLAHVLKQYAAQLNGVIKLIFQPAEEGTRGARAXVAAGVVDDVDYFT 206
Query: 62 GLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHA 99
+H+ + P GTV G A F+ +G HA
Sbjct: 207 AIHIGTGVPAGTVVC-GGDNFXATTKFDVQFSGVAAHA 243
>pdb|3RAM|A Chain A, Crystal Structure Of Hmra
pdb|3RAM|B Chain B, Crystal Structure Of Hmra
pdb|3RAM|C Chain C, Crystal Structure Of Hmra
pdb|3RAM|D Chain D, Crystal Structure Of Hmra
Length = 394
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 90/195 (46%), Gaps = 22/195 (11%)
Query: 2 HACGHDA-HVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG--GGAK-KMLDAGALENV 57
HACGH+ A +LGA + QV +I G +V++ PAEEGG G AK + AG ++ +
Sbjct: 91 HACGHNIIGTASVLGAIGLKQVID-QIGGKVVVLGCPAEEGGENGSAKASYVKAGVIDQI 149
Query: 58 EAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQ----HTIDPIVAAS 113
+ +H P G + TLA + GK HA+ + +D ++
Sbjct: 150 DIALXIH-----P-GNETYKTIDTLAVD-VLDVKFYGKSAHASENADEALNALDAXISYF 202
Query: 114 NVIVSLQHLVSREADPLDSQVLTVAKFEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQR 173
N + L+ + + D +V V +GG A NIIPD RA +++ + L ++
Sbjct: 203 NGVAQLRQHIKK-----DQRVHGVI-LDGGKAANIIPDYTHARFYTRAXTRKELDILTEK 256
Query: 174 IEEVVMKQASVQRCN 188
+ ++ A C+
Sbjct: 257 VNQIARGAAIQTGCD 271
>pdb|1CG2|A Chain A, Carboxypeptidase G2
pdb|1CG2|B Chain B, Carboxypeptidase G2
pdb|1CG2|C Chain C, Carboxypeptidase G2
pdb|1CG2|D Chain D, Carboxypeptidase G2
Length = 393
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 20/183 (10%)
Query: 11 AMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGGG-GAKKMLDAGALENVEAIFGLHVSSLF 69
A++L K+L+ + GTI ++F EE G G++ ++ EA +V S
Sbjct: 125 AVILHTLKLLKEYGVRDYGTITVLFNTDEEKGSFGSRDLIQE------EAKLADYVLSFE 178
Query: 70 PVGTVASRPGPTLAAGG--FFEAVINGKGGHA-AIPQHTIDPIVAASNVIVSLQHLVSRE 126
P T A +L G + + I GK HA A P+ ++ +V AS++++ + + +
Sbjct: 179 P--TSAGDEKLSLGTSGIAYVQVNITGKASHAGAAPELGVNALVEASDLVLRTMN-IDDK 235
Query: 127 ADPLDSQVLTVAKFEGGGAFNIIPDSVTIGGTFRAFSKE----SIIQLKQRIEEVVMKQA 182
A L T+AK G NIIP S T+ R E ++ L++R ++ + +A
Sbjct: 236 AKNLRFN-WTIAK--AGNVSNIIPASATLNADVRYARNEDFDAAMKTLEERAQQKKLPEA 292
Query: 183 SVQ 185
V+
Sbjct: 293 DVK 295
>pdb|3RZA|A Chain A, Crystal Structure Of A Tripeptidase (Sav1512) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 2.10 A
Resolution
pdb|3RZA|B Chain B, Crystal Structure Of A Tripeptidase (Sav1512) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 2.10 A
Resolution
Length = 396
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 79/195 (40%), Gaps = 22/195 (11%)
Query: 11 AMLLGAAKMLQVFRHEI--KGTIVLVFQPAEEGGGGAKKMLDAGALENVEAIFGLHVSSL 68
A L ++LQV + + G I V EE G K L++ E ++A FG + +
Sbjct: 132 AGLAAXLEVLQVIKEQQIPHGQIQFVITVGEESGLIGAKELNS---ELLDADFGYAIDAS 188
Query: 69 FPVGT-VASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREA 127
VGT V P L A I GK HA+ P+ + I A+ I SR
Sbjct: 189 ADVGTTVVGAPTQXL-----ISAKIIGKTAHASTPKEGVSAINIAAKAI-------SRXK 236
Query: 128 DPLDSQVLT--VAKFEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVVMKQASVQ 185
++ T + KF GG A NI+ D V + R+ E I + +V AS
Sbjct: 237 LGQVDEITTANIGKFHGGSATNIVADEVILEAEARSHDPERIKTQVKHXTDVFETTASEL 296
Query: 186 RCNATVTFDDKSFYP 200
A VT + YP
Sbjct: 297 GGKAEVTVEQS--YP 309
>pdb|1VGY|A Chain A, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
pdb|1VGY|B Chain B, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
Length = 393
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 91 VINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREAD----PLDSQVLTVAKFEGGGAF 146
+ GK GH A P I+P+ + ++ L V E + P Q+ + G GA
Sbjct: 190 TVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDEGNEYFPPTSFQISNING--GTGAT 247
Query: 147 NIIPDSVTIGGTFRAFSKESIIQLKQRIEEVVMK 180
N+IP + + FR ++ + LKQR+ ++ K
Sbjct: 248 NVIPGELNVKFNFRFSTESTEAGLKQRVHAILDK 281
>pdb|3GB0|A Chain A, Crystal Structure Of Aminopeptidase Pept (Np_980509.1)
From Bacillus Cereus Atcc 10987 At 2.04 A Resolution
Length = 373
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 57/138 (41%), Gaps = 13/138 (9%)
Query: 29 GTIVLVFQPAEEGGGGAKKMLDAGALENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFF 88
GTI + EE G K LD E + A +G + S VG + PT A
Sbjct: 131 GTIEFIITVGEESGLVGAKALD---RERITAKYGYALDSDGKVGEIVV-AAPTQAK---V 183
Query: 89 EAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREADPLDSQVL-TVAKFEGGGAFN 147
A+I GK HA + P S + ++ + + +DS+ + +FEGG N
Sbjct: 184 NAIIRGKTAHAGVA-----PEKGVSAITIAAKAIAKXPLGRIDSETTANIGRFEGGTQTN 238
Query: 148 IIPDSVTIGGTFRAFSKE 165
I+ D V I R+ E
Sbjct: 239 IVCDHVQIFAEARSLINE 256
>pdb|3IC1|A Chain A, Crystal Structure Of Zinc-Bound Succinyl-Diaminopimelate
Desuccinylase From Haemophilus Influenzae
pdb|3IC1|B Chain B, Crystal Structure Of Zinc-Bound Succinyl-Diaminopimelate
Desuccinylase From Haemophilus Influenzae
pdb|3ISZ|A Chain A, Crystal Structure Of Mono-zinc Form Of
Succinyl-diaminopimelate Desuccinylase From Haemophilus
Influenzae
pdb|3ISZ|B Chain B, Crystal Structure Of Mono-zinc Form Of
Succinyl-diaminopimelate Desuccinylase From Haemophilus
Influenzae
Length = 377
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 12/96 (12%)
Query: 92 INGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREAD-------PLDSQVLTVAKFEGGG 144
I G GH A P +PI A+ + LQ L + + D P Q+ + G G
Sbjct: 188 IQGIQGHVAYPHLAENPIHKAA---LFLQELTTYQWDKGNEFFPPTSLQIANI--HAGTG 242
Query: 145 AFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVVMK 180
+ N+IP + I R ++ + +KQ++ E++ K
Sbjct: 243 SNNVIPAELYIQFNLRYCTEVTDEIIKQKVAEMLEK 278
>pdb|2DE0|X Chain X, Crystal Structure Of Human Alpha 1,6-fucosyltransferase,
Fut8
Length = 526
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 14/96 (14%)
Query: 170 LKQRIEEVVMKQ--------ASVQRCNATVTFDDKSFYPVTVNNKNLHEHFQKVAADMLG 221
L++ IEE K V+R + T + +F+P+ ++ EHFQ +A M
Sbjct: 280 LEKEIEEATKKLGFKHPVIGVHVRRTDKVGT--EAAFHPIEEYMVHVEEHFQLLARRM-- 335
Query: 222 VQNIKENRPLMGTEDFSFFAEAIPGYFYYLGMNDET 257
+ + R + T+D S EA Y Y ++D +
Sbjct: 336 --QVDKKRVYLATDDPSLLKEAKTKYPNYEFISDNS 369
>pdb|3S5H|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
pdb|3S5I|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
pdb|3S5K|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
pdb|3S5M|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
Length = 1193
Score = 28.1 bits (61), Expect = 6.6, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 14/103 (13%)
Query: 192 TFDDKSFYPV-TVNNKNLHEHFQKVAADMLGVQNIKENRPLMGTEDFSFFAEAIPGYFYY 250
TF+D++ Y ++NNK+ + V D + N+ EN+ + TE +++ E
Sbjct: 164 TFNDRTVYMAGSMNNKDFF-NIMGVYMDSVFQPNVLENKYIFETEGWTYEVEK------- 215
Query: 251 LGMNDETKGKFETGHSPYFRVNEDALPYG---AALHASLATRY 290
+ ++ KGK E ++V+ + + Y AL + L Y
Sbjct: 216 --LKEDEKGKAEIPQMKDYKVSFNGIVYNEMKGALSSPLEDLY 256
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,127,951
Number of Sequences: 62578
Number of extensions: 373335
Number of successful extensions: 924
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 906
Number of HSP's gapped (non-prelim): 15
length of query: 309
length of database: 14,973,337
effective HSP length: 99
effective length of query: 210
effective length of database: 8,778,115
effective search space: 1843404150
effective search space used: 1843404150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)