BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021683
(309 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IU7|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Mn
Inhibitor A02
pdb|3IU8|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T03
pdb|3IU9|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T07
Length = 288
Score = 294 bits (753), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 151/282 (53%), Positives = 188/282 (66%), Gaps = 4/282 (1%)
Query: 28 RKRLRPGKVSPHRPVPDHIPRPPYVNSQKPIGIV-SGPEVHDEKGIECMRVSGRLAAQVL 86
R L PG +SP RPVP+ I RP YV KP S P V + IE MRV+GR+AA L
Sbjct: 7 RTALSPGVLSPTRPVPNWIARPEYVG--KPAAQEGSEPWVQTPEVIEKMRVAGRIAAGAL 64
Query: 87 EYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRA 146
AG V PG+TTDE+D+ H+ ++DNGAYPS LGY GFPKS CTS+NE ICHGIPDS
Sbjct: 65 AEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTV 124
Query: 147 LEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYK 206
+ DGD +NIDVT Y+ G HGDT+ATF GDV DE R LV T++ +AI+ PG
Sbjct: 125 ITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRALS 184
Query: 207 KIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY-RNNDHGRMVLNQTFTIEPML 265
IG+ I+ +A+R+ Y VVR F GHGIG FH VVLHY + M TFTIEPM+
Sbjct: 185 VIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMI 244
Query: 266 TIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 307
+G+++ +WDD WT+VT+D +AQFEHT+L+T G EILT
Sbjct: 245 NLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEILT 286
>pdb|1Y1N|A Chain A, Identification Of Sh3 Motif In M. Tuberculosis Methionine
Aminopeptidase Suggests A Mode Of Interaction With The
Ribosome
pdb|1YJ3|A Chain A, Crystal Structure Analysis Of Product Bound Methionine
Aminopeptidase Type 1c From Mycobacterium Tuberculosis
Length = 291
Score = 294 bits (753), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 151/282 (53%), Positives = 188/282 (66%), Gaps = 4/282 (1%)
Query: 28 RKRLRPGKVSPHRPVPDHIPRPPYVNSQKPIGIV-SGPEVHDEKGIECMRVSGRLAAQVL 86
R L PG +SP RPVP+ I RP YV KP S P V + IE MRV+GR+AA L
Sbjct: 10 RTALSPGVLSPTRPVPNWIARPEYVG--KPAAQEGSEPWVQTPEVIEKMRVAGRIAAGAL 67
Query: 87 EYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRA 146
AG V PG+TTDE+D+ H+ ++DNGAYPS LGY GFPKS CTS+NE ICHGIPDS
Sbjct: 68 AEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTV 127
Query: 147 LEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYK 206
+ DGD +NIDVT Y+ G HGDT+ATF GDV DE R LV T++ +AI+ PG
Sbjct: 128 ITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRALS 187
Query: 207 KIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY-RNNDHGRMVLNQTFTIEPML 265
IG+ I+ +A+R+ Y VVR F GHGIG FH VVLHY + M TFTIEPM+
Sbjct: 188 VIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMI 247
Query: 266 TIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 307
+G+++ +WDD WT+VT+D +AQFEHT+L+T G EILT
Sbjct: 248 NLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEILT 289
>pdb|3PKA|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y02, In Mn
Form
pdb|3PKB|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y16, In Mn
Form
pdb|3PKC|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y08, In Mn
Form
pdb|3PKD|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Mn
Form
pdb|3PKE|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Ni
Form
Length = 285
Score = 294 bits (753), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 151/282 (53%), Positives = 188/282 (66%), Gaps = 4/282 (1%)
Query: 28 RKRLRPGKVSPHRPVPDHIPRPPYVNSQKPIGIV-SGPEVHDEKGIECMRVSGRLAAQVL 86
R L PG +SP RPVP+ I RP YV KP S P V + IE MRV+GR+AA L
Sbjct: 4 RTALSPGVLSPTRPVPNWIARPEYVG--KPAAQEGSEPWVQTPEVIEKMRVAGRIAAGAL 61
Query: 87 EYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRA 146
AG V PG+TTDE+D+ H+ ++DNGAYPS LGY GFPKS CTS+NE ICHGIPDS
Sbjct: 62 AEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTV 121
Query: 147 LEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYK 206
+ DGD +NIDVT Y+ G HGDT+ATF GDV DE R LV T++ +AI+ PG
Sbjct: 122 ITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRALS 181
Query: 207 KIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY-RNNDHGRMVLNQTFTIEPML 265
IG+ I+ +A+R+ Y VVR F GHGIG FH VVLHY + M TFTIEPM+
Sbjct: 182 VIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMI 241
Query: 266 TIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 307
+G+++ +WDD WT+VT+D +AQFEHT+L+T G EILT
Sbjct: 242 NLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEILT 283
>pdb|3ROR|A Chain A, Crystal Structure Of C105s Mutant Of Mycobacterium
Tuberculosis Methionine Aminopeptidase
Length = 291
Score = 291 bits (745), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 150/282 (53%), Positives = 187/282 (66%), Gaps = 4/282 (1%)
Query: 28 RKRLRPGKVSPHRPVPDHIPRPPYVNSQKPIGIV-SGPEVHDEKGIECMRVSGRLAAQVL 86
R L PG +SP RPVP+ I RP YV KP S P V + IE MRV+GR+AA L
Sbjct: 10 RTALSPGVLSPTRPVPNWIARPEYVG--KPAAQEGSEPWVQTPEVIEKMRVAGRIAAGAL 67
Query: 87 EYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRA 146
AG V PG+TTDE+D+ H+ ++DNGAYPS LGY GFPKS TS+NE ICHGIPDS
Sbjct: 68 AEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCSTSLNEVICHGIPDSTV 127
Query: 147 LEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYK 206
+ DGD +NIDVT Y+ G HGDT+ATF GDV DE R LV T++ +AI+ PG
Sbjct: 128 ITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRALS 187
Query: 207 KIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY-RNNDHGRMVLNQTFTIEPML 265
IG+ I+ +A+R+ Y VVR F GHGIG FH VVLHY + M TFTIEPM+
Sbjct: 188 VIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMI 247
Query: 266 TIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 307
+G+++ +WDD WT+VT+D +AQFEHT+L+T G EILT
Sbjct: 248 NLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEILT 289
>pdb|2B3H|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I With A Third Cobalt In The Active Site
pdb|2B3K|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I In The Holo Form
pdb|2B3L|A Chain A, Crystal Structure Of Type I Human Methionine
Aminopeptidase In The Apo Form
pdb|2GZ5|A Chain A, Human Type 1 Methionine Aminopeptidase In Complex With
Ovalicin At 1.1 Ang
pdb|2NQ6|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
1 In Complex With
3-Tert-Butoxycarbonylaminopyridine-2-Carboxylic Acid
Thiazole-2- Ylamide
pdb|2NQ7|A Chain A, Crystal Structure Of Type 1 Human Methionine
Aminopeptidase In Complex With
3-(2,2-Dimethylpropionylamino)pyridine-2-Carboxylic Acid
Thiazole-2-Ylamide
Length = 329
Score = 280 bits (715), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 144/295 (48%), Positives = 186/295 (63%), Gaps = 9/295 (3%)
Query: 23 EPNRRRKRLRPG-KVSPHRPVPDHIPRPPYVN-------SQKPIGIVSGPEVHDEKGIEC 74
+P R +LRP + P RPVP +I RP Y + S++ + S ++ + IE
Sbjct: 24 DPYRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEG 83
Query: 75 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN 134
MR+ RLA +VL+ A ++KPG+TT+EID AVH I YPSPL Y FPKS CTSVN
Sbjct: 84 MRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVN 143
Query: 135 ECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHK 194
E ICHGIPD R L++GD +N+D+T+Y NGYHGD + TFF G+VDD AR LV+ T +CL +
Sbjct: 144 EVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQ 203
Query: 195 AISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY-RNNDHGRM 253
AI PG+ Y+++G IQ HA + VVR + GHGI ++FH P V HY +N G M
Sbjct: 204 AIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVM 263
Query: 254 VLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 308
FTIEPM+ G W D WT VT DG SAQFEHT+L+T G EILT+
Sbjct: 264 KSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILTR 318
>pdb|4FLI|A Chain A, Human Metap1 With Bengamide Analog Y16, In Mn Form
pdb|4FLJ|A Chain A, Human Metap1 With Bengamide Analog Y08, In Mn Form
pdb|4FLK|A Chain A, Human Metap1 With Bengamide Analog Y10, In Mn Form
pdb|4FLL|A Chain A, Human Metap1 With Bengamide Analog Yz6, In Mn Form
Length = 326
Score = 279 bits (713), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 143/292 (48%), Positives = 184/292 (63%), Gaps = 9/292 (3%)
Query: 26 RRRKRLRPG-KVSPHRPVPDHIPRPPYVN-------SQKPIGIVSGPEVHDEKGIECMRV 77
R +LRP + P RPVP +I RP Y + S++ + S ++ + IE MR+
Sbjct: 3 RYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMRL 62
Query: 78 SGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECI 137
RLA +VL+ A ++KPG+TT+EID AVH I YPSPL Y FPKS CTSVNE I
Sbjct: 63 VCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVI 122
Query: 138 CHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAIS 197
CHGIPD R L++GD +N+D+T+Y NGYHGD + TFF G+VDD AR LV+ T +CL +AI
Sbjct: 123 CHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAID 182
Query: 198 VCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY-RNNDHGRMVLN 256
PG+ Y+++G IQ HA + VVR + GHGI ++FH P V HY +N G M
Sbjct: 183 AVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVMKSG 242
Query: 257 QTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 308
FTIEPM+ G W D WT VT DG SAQFEHT+L+T G EILT+
Sbjct: 243 HVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILTR 294
>pdb|2G6P|A Chain A, Crystal Structure Of Truncated (Delta 1-89) Human
Methionine Aminopeptidase Type 1 In Complex With Pyridyl
Pyrimidine Derivative
Length = 304
Score = 278 bits (711), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 143/292 (48%), Positives = 184/292 (63%), Gaps = 9/292 (3%)
Query: 26 RRRKRLRPG-KVSPHRPVPDHIPRPPYVN-------SQKPIGIVSGPEVHDEKGIECMRV 77
R +LRP + P RPVP +I RP Y + S++ + S ++ + IE MR+
Sbjct: 2 RYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMRL 61
Query: 78 SGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECI 137
RLA +VL+ A ++KPG+TT+EID AVH I YPSPL Y FPKS CTSVNE I
Sbjct: 62 VCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVI 121
Query: 138 CHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAIS 197
CHGIPD R L++GD +N+D+T+Y NGYHGD + TFF G+VDD AR LV+ T +CL +AI
Sbjct: 122 CHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAID 181
Query: 198 VCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY-RNNDHGRMVLN 256
PG+ Y+++G IQ HA + VVR + GHGI ++FH P V HY +N G M
Sbjct: 182 AVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVMKSG 241
Query: 257 QTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 308
FTIEPM+ G W D WT VT DG SAQFEHT+L+T G EILT+
Sbjct: 242 HVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILTR 293
>pdb|4FUK|A Chain A, Aminopeptidase From Trypanosoma Brucei
pdb|4FUK|B Chain B, Aminopeptidase From Trypanosoma Brucei
Length = 337
Score = 270 bits (690), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 142/297 (47%), Positives = 179/297 (60%), Gaps = 23/297 (7%)
Query: 31 LRPGKVSPHRPVPDHIPRPPYVNSQKPIGIVSGPE---------------VHDE--KGIE 73
LRPGK++P R VP HI RP Y + G VS E +HD+ K E
Sbjct: 12 LRPGKITPRRAVPSHILRPDYADRA---GGVSASEEKDRGSKVKVYNIQFLHDDSKKTAE 68
Query: 74 CMRVSG--RLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 131
R+ +L+ +VL+ A KPGITTDE+D+ VH+ ++ YPSPL Y GFPKSVCT
Sbjct: 69 IQRIKTVCQLSREVLDIATAAAKPGITTDELDRIVHEATVERNMYPSPLNYYGFPKSVCT 128
Query: 132 SVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDC 191
SVNE ICHGIPDSR LE+GD +NIDV+ YLNG+HGD + T F G DD++ LV +C
Sbjct: 129 SVNEVICHGIPDSRELEEGDILNIDVSSYLNGFHGDLNETVFIGRPDDDSVRLVHAAYEC 188
Query: 192 LHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDH- 250
L I V P YK++G I+ A +Y VVR + GHG+G +FH P V HY NN
Sbjct: 189 LCAGIGVVKPEALYKQVGDAIEACASQYQCSVVRTYTGHGVGHLFHTSPTVCHYANNKSL 248
Query: 251 GRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 307
G M FTIEPM+ +G+ V W D WT T+DG SAQFEHT+++T G EI T
Sbjct: 249 GMMRPGHVFTIEPMINLGTWQDVTWPDKWTSTTKDGRRSAQFEHTMVVTNGGVEIFT 305
>pdb|3S6B|A Chain A, Crystal Structure Of Methionine Aminopeptidase 1b From
Plasmodium Falciparum, Pf10_0150
Length = 368
Score = 268 bits (686), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 138/287 (48%), Positives = 181/287 (63%), Gaps = 9/287 (3%)
Query: 31 LRPGKVSPHRPVPDHIPRPPYVNSQKPIGIV-----SGPEVHDEKGIECMRVSGRLAAQV 85
+RP +S VP HI RP Y S P + S V++E+ I+ +R + L +
Sbjct: 63 VRPWPLSKINHVPSHIERPDYAISSIPESELIYKRKSDIYVNNEEEIQRIREACILGRKT 122
Query: 86 LEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSR 145
L+YA TLV PG+TTDEID+ VH+ II N AYPS L Y FPKS CTSVNE +CHGIPD R
Sbjct: 123 LDYAHTLVSPGVTTDEIDRKVHEFIIKNNAYPSTLNYYKFPKSCCTSVNEIVCHGIPDYR 182
Query: 146 ALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDD---EARNLVKVTKDCLHKAISVCAPG 202
L+ GD INID++V+ G H D + T+F GD++D E + LV+ L +AI C PG
Sbjct: 183 PLKSGDIINIDISVFYKGVHSDLNETYFVGDINDVPKEGKELVETCYFSLMEAIKKCKPG 242
Query: 203 MEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDH-GRMVLNQTFTI 261
M YK IG I + + N+ VVR + GHG+G++FH++P V H++ N G M FTI
Sbjct: 243 MFYKNIGTLIDAYVSKKNFSVVRSYSGHGVGKLFHSNPTVPHFKKNKAVGIMKPGHVFTI 302
Query: 262 EPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 308
EPM+ G + V+W D WT T DG LSAQFEHT+LIT +G EILT+
Sbjct: 303 EPMINQGHYSDVLWPDQWTSATSDGKLSAQFEHTLLITNNGVEILTK 349
>pdb|3MX6|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
pdb|3MX6|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
Length = 262
Score = 239 bits (610), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 114/245 (46%), Positives = 163/245 (66%), Gaps = 2/245 (0%)
Query: 65 EVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGG 124
++H EK MR +G+LAA+ L++ VKP +TT+ ++ H I + A P+PL Y G
Sbjct: 7 KIHTEKDFIKMRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNFITSHNAIPAPLNYKG 66
Query: 125 FPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNL 184
FPKS+CTS+N +CHGIP+ + L++GD +NIDVTV L+G++GDTS ++ GDV + + L
Sbjct: 67 FPKSICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKPKRL 126
Query: 185 VKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLH 244
++VT D + K I V PG + IG IQ +A+++NY VVR + GHGIGRVFH P +L+
Sbjct: 127 IQVTYDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYSVVRDYTGHGIGRVFHDKPSILN 186
Query: 245 YRNNDHGRMVLN-QTFTIEPMLTIGSINPVMWD-DNWTIVTEDGSLSAQFEHTILITRDG 302
Y N G + FT+EPM+ G+ + ++ D WT+ T D SLSAQFEHTI +T+DG
Sbjct: 187 YGRNGTGLTLKEGMFFTVEPMINAGNYDTILSKLDGWTVTTRDKSLSAQFEHTIGVTKDG 246
Query: 303 AEILT 307
EI T
Sbjct: 247 FEIFT 251
>pdb|3MR1|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|C Chain C, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|D Chain D, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
Length = 252
Score = 239 bits (610), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 114/245 (46%), Positives = 163/245 (66%), Gaps = 2/245 (0%)
Query: 65 EVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGG 124
++H EK MR +G+LAA+ L++ VKP +TT+ ++ H I + A P+PL Y G
Sbjct: 7 KIHTEKDFIKMRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNFITSHNAIPAPLNYKG 66
Query: 125 FPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNL 184
FPKS+CTS+N +CHGIP+ + L++GD +NIDVTV L+G++GDTS ++ GDV + + L
Sbjct: 67 FPKSICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKPKRL 126
Query: 185 VKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLH 244
++VT D + K I V PG + IG IQ +A+++NY VVR + GHGIGRVFH P +L+
Sbjct: 127 IQVTYDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYSVVRDYTGHGIGRVFHDKPSILN 186
Query: 245 YRNNDHGRMVLN-QTFTIEPMLTIGSINPVMWD-DNWTIVTEDGSLSAQFEHTILITRDG 302
Y N G + FT+EPM+ G+ + ++ D WT+ T D SLSAQFEHTI +T+DG
Sbjct: 187 YGRNGTGLTLKEGMFFTVEPMINAGNYDTILSKLDGWTVTTRDKSLSAQFEHTIGVTKDG 246
Query: 303 AEILT 307
EI T
Sbjct: 247 FEIFT 251
>pdb|2GU4|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
0.5, Di-Metalated
pdb|2GU4|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
0.5, Di-Metalated
pdb|2GU5|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
1, Di-Metalated
pdb|2GU5|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
1, Di-Metalated
pdb|2GU6|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
2, Di-metalated
pdb|2GU6|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
2, Di-metalated
pdb|2GU7|A Chain A, E. Coli Methionine Aminopeptidase Unliganded, 1:0.5
pdb|2GU7|B Chain B, E. Coli Methionine Aminopeptidase Unliganded, 1:0.5
Length = 263
Score = 219 bits (559), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 112/239 (46%), Positives = 157/239 (65%), Gaps = 3/239 (1%)
Query: 72 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNG-AYPSPLGYGGFPKSVC 130
IE MRV+GRLAA+VLE VKPG++T E+D+ + I++ A + LGY G+PKSVC
Sbjct: 10 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 69
Query: 131 TSVNECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTK 189
S+NE +CHGIPD ++ L+DGD +NIDVTV +G+HGDTS F G L ++T+
Sbjct: 70 ISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQ 129
Query: 190 DCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNND 249
+ L+ A+ + PG+ ++IG IQ + + VVR++ GHGIGR FH +P VLHY + +
Sbjct: 130 ESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDSRE 189
Query: 250 HGRMVL-NQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 307
++ TFTIEPM+ G D WT+ T+D SLSAQ+EHTI++T +G EILT
Sbjct: 190 TNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 248
>pdb|4A6V|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
pdb|4A6V|B Chain B, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
Length = 265
Score = 219 bits (559), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 112/239 (46%), Positives = 157/239 (65%), Gaps = 3/239 (1%)
Query: 72 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNG-AYPSPLGYGGFPKSVC 130
IE MRV+GRLAA+VLE VKPG++T E+D+ + I++ A + LGY G+PKSVC
Sbjct: 11 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 70
Query: 131 TSVNECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTK 189
S+NE +CHGIPD ++ L+DGD +NIDVTV +G+HGDTS F G L ++T+
Sbjct: 71 ISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQ 130
Query: 190 DCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNND 249
+ L+ A+ + PG+ ++IG IQ + + VVR++ GHGIGR FH +P VLHY + +
Sbjct: 131 ESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDSRE 190
Query: 250 HGRMVL-NQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 307
++ TFTIEPM+ G D WT+ T+D SLSAQ+EHTI++T +G EILT
Sbjct: 191 TNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 249
>pdb|2GG0|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG2|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG3|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG5|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG7|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG8|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG9|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GGB|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GGC|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2Q93|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
B21
pdb|2Q95|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A05
pdb|2Q96|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A18
Length = 263
Score = 219 bits (559), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 112/239 (46%), Positives = 157/239 (65%), Gaps = 3/239 (1%)
Query: 72 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVC 130
IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC
Sbjct: 10 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 69
Query: 131 TSVNECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTK 189
S+NE +CHGIPD ++ L+DGD +NIDVTV +G+HGDTS F G L ++T+
Sbjct: 70 ISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQ 129
Query: 190 DCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNND 249
+ L+ A+ + PG+ ++IG IQ + + VVR++ GHGIGR FH +P VLHY + +
Sbjct: 130 ESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDSRE 189
Query: 250 HGRMVL-NQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 307
++ TFTIEPM+ G D WT+ T+D SLSAQ+EHTI++T +G EILT
Sbjct: 190 TNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 248
>pdb|2GTX|A Chain A, Structural Basis Of Catalysis By Mononuclear Methionine
Aminopeptidase
pdb|2GTX|B Chain B, Structural Basis Of Catalysis By Mononuclear Methionine
Aminopeptidase
pdb|3D27|A Chain A, E. Coli Methionine Aminopeptidase With Fe Inhibitor W29
Length = 261
Score = 219 bits (559), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 112/239 (46%), Positives = 157/239 (65%), Gaps = 3/239 (1%)
Query: 72 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVC 130
IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC
Sbjct: 8 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 67
Query: 131 TSVNECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTK 189
S+NE +CHGIPD ++ L+DGD +NIDVTV +G+HGDTS F G L ++T+
Sbjct: 68 ISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQ 127
Query: 190 DCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNND 249
+ L+ A+ + PG+ ++IG IQ + + VVR++ GHGIGR FH +P VLHY + +
Sbjct: 128 ESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDSRE 187
Query: 250 HGRMVL-NQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 307
++ TFTIEPM+ G D WT+ T+D SLSAQ+EHTI++T +G EILT
Sbjct: 188 TNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 246
>pdb|2P99|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With
Inhibitor Ye6
Length = 261
Score = 219 bits (559), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 112/239 (46%), Positives = 157/239 (65%), Gaps = 3/239 (1%)
Query: 72 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVC 130
IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC
Sbjct: 10 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 69
Query: 131 TSVNECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTK 189
S+NE +CHGIPD ++ L+DGD +NIDVTV +G+HGDTS F G L ++T+
Sbjct: 70 ISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQ 129
Query: 190 DCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNND 249
+ L+ A+ + PG+ ++IG IQ + + VVR++ GHGIGR FH +P VLHY + +
Sbjct: 130 ESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDSRE 189
Query: 250 HGRMVL-NQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 307
++ TFTIEPM+ G D WT+ T+D SLSAQ+EHTI++T +G EILT
Sbjct: 190 TNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 248
>pdb|2P98|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With
Inhibitor Ye7
pdb|2P9A|A Chain A, E. Coli Methionine Aminopeptidase Dimetalated With
Inhibitor Ye6
pdb|2Q92|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
B23
pdb|2Q94|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A04
Length = 262
Score = 219 bits (558), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 112/239 (46%), Positives = 157/239 (65%), Gaps = 3/239 (1%)
Query: 72 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVC 130
IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC
Sbjct: 10 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 69
Query: 131 TSVNECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTK 189
S+NE +CHGIPD ++ L+DGD +NIDVTV +G+HGDTS F G L ++T+
Sbjct: 70 ISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQ 129
Query: 190 DCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNND 249
+ L+ A+ + PG+ ++IG IQ + + VVR++ GHGIGR FH +P VLHY + +
Sbjct: 130 ESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDSRE 189
Query: 250 HGRMVL-NQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 307
++ TFTIEPM+ G D WT+ T+D SLSAQ+EHTI++T +G EILT
Sbjct: 190 TNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 248
>pdb|1XNZ|A Chain A, Crystal Structure Of Mn(Ii) Form Of E. Coli. Methionine
Aminopeptidase In Complex With
5-(2-Chlorophenyl)furan-2- Carboxylic Acid
pdb|2BB7|A Chain A, Mn Form Of E. Coli Methionine Aminopeptidase In Complex
With A Quinolinyl Sulfonamide Inhibitor
pdb|2EVC|A Chain A, Crystal Structure Of E. Coli. Methionine Amino Peptidase
In Complex With 5-(2-(trifluoromethyl)phenyl)furan-2-
Carboxylic Acid
pdb|2EVM|A Chain A, Crystal Structure Of Methionine Aminopeptidase In Complex
With 5-(2,5-Dichlorophenyl)furan-2-Carboxylic Acid
pdb|2EVO|A Chain A, Crystal Structure Of Methionine Amino Peptidase In Complex
With N-Cyclopentyl-N-(Thiazol-2-Yl)oxalamide
pdb|2EVO|B Chain B, Crystal Structure Of Methionine Amino Peptidase In Complex
With N-Cyclopentyl-N-(Thiazol-2-Yl)oxalamide
pdb|1MAT|A Chain A, Structure Of The Cobalt-Dependent Methionine
Aminopeptidase From Escherichia Coli: A New Type Of
Proteolytic Enzyme
Length = 264
Score = 219 bits (558), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 112/239 (46%), Positives = 157/239 (65%), Gaps = 3/239 (1%)
Query: 72 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVC 130
IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC
Sbjct: 11 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 70
Query: 131 TSVNECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTK 189
S+NE +CHGIPD ++ L+DGD +NIDVTV +G+HGDTS F G L ++T+
Sbjct: 71 ISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQ 130
Query: 190 DCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNND 249
+ L+ A+ + PG+ ++IG IQ + + VVR++ GHGIGR FH +P VLHY + +
Sbjct: 131 ESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDSRE 190
Query: 250 HGRMVL-NQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 307
++ TFTIEPM+ G D WT+ T+D SLSAQ+EHTI++T +G EILT
Sbjct: 191 TNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 249
>pdb|4MAT|A Chain A, E.Coli Methionine Aminopeptidase His79ala Mutant
Length = 278
Score = 218 bits (554), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 111/239 (46%), Positives = 157/239 (65%), Gaps = 3/239 (1%)
Query: 72 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNG-AYPSPLGYGGFPKSVC 130
IE MRV+GRLAA+VLE VKPG++T E+D+ + I++ A + LGY G+PKSVC
Sbjct: 11 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 70
Query: 131 TSVNECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTK 189
S+NE +CHGIPD ++ L+DGD +NIDVTV +G+HGDTS F G L ++T+
Sbjct: 71 ISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQ 130
Query: 190 DCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNND 249
+ L+ A+ + PG+ ++IG IQ + + VVR++ GHGIG+ FH +P VLHY + +
Sbjct: 131 ESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVLHYDSRE 190
Query: 250 HGRMVL-NQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 307
++ TFTIEPM+ G D WT+ T+D SLSAQ+EHTI++T +G EILT
Sbjct: 191 TNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 249
>pdb|1C27|A Chain A, E. Coli Methionine Aminopeptidase:norleucine Phosphonate
Complex
pdb|1C21|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Complex
pdb|1C22|A Chain A, E. Coli Methionine Aminopeptidase: Trifluoromethionine
Complex
pdb|1C23|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphonate
Complex
pdb|1C24|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphinate
Complex
Length = 263
Score = 218 bits (554), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 111/239 (46%), Positives = 157/239 (65%), Gaps = 3/239 (1%)
Query: 72 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVC 130
IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC
Sbjct: 10 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 69
Query: 131 TSVNECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTK 189
S+NE +CHGIPD ++ L+DGD +NIDVTV +G+HGDTS F G L ++T+
Sbjct: 70 ISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQ 129
Query: 190 DCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNND 249
+ L+ A+ + PG+ ++IG IQ + + VVR++ GHGIG+ FH +P VLHY + +
Sbjct: 130 ESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVLHYDSRE 189
Query: 250 HGRMVL-NQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 307
++ TFTIEPM+ G D WT+ T+D SLSAQ+EHTI++T +G EILT
Sbjct: 190 TNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 248
>pdb|2MAT|A Chain A, E.Coli Methionine Aminopeptidase At 1.9 Angstrom
Resolution
pdb|1YVM|A Chain A, E. Coli Methionine Aminopeptidase In Complex With
Thiabendazole
pdb|4A6W|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
Length = 264
Score = 218 bits (554), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 111/239 (46%), Positives = 157/239 (65%), Gaps = 3/239 (1%)
Query: 72 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVC 130
IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC
Sbjct: 11 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 70
Query: 131 TSVNECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTK 189
S+NE +CHGIPD ++ L+DGD +NIDVTV +G+HGDTS F G L ++T+
Sbjct: 71 ISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQ 130
Query: 190 DCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNND 249
+ L+ A+ + PG+ ++IG IQ + + VVR++ GHGIG+ FH +P VLHY + +
Sbjct: 131 ESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVLHYDSRE 190
Query: 250 HGRMVL-NQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 307
++ TFTIEPM+ G D WT+ T+D SLSAQ+EHTI++T +G EILT
Sbjct: 191 TNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 249
>pdb|3MAT|A Chain A, E.coli Methionine Aminopeptidase Transition-state
Inhibitor Complex
Length = 265
Score = 218 bits (554), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 111/239 (46%), Positives = 157/239 (65%), Gaps = 3/239 (1%)
Query: 72 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNG-AYPSPLGYGGFPKSVC 130
IE MRV+GRLAA+VLE VKPG++T E+D+ + I++ A + LGY G+PKSVC
Sbjct: 11 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 70
Query: 131 TSVNECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTK 189
S+NE +CHGIPD ++ L+DGD +NIDVTV +G+HGDTS F G L ++T+
Sbjct: 71 ISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQ 130
Query: 190 DCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNND 249
+ L+ A+ + PG+ ++IG IQ + + VVR++ GHGIG+ FH +P VLHY + +
Sbjct: 131 ESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVLHYDSRE 190
Query: 250 HGRMVL-NQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 307
++ TFTIEPM+ G D WT+ T+D SLSAQ+EHTI++T +G EILT
Sbjct: 191 TNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 249
>pdb|1O0X|A Chain A, Crystal Structure Of Methionine Aminopeptidase (Tm1478)
From Thermotoga Maritima At 1.90 A Resolution
Length = 262
Score = 174 bits (442), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 90/240 (37%), Positives = 139/240 (57%), Gaps = 4/240 (1%)
Query: 72 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 131
IE M+ +G+ A L ++ PG T +++ V ++ P+ GYGG+ + C
Sbjct: 22 IEKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGYGGYKYATCV 81
Query: 132 SVNECICHGIP-DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKD 190
SVNE + HG+P + ++GD +++DV G +GD + T+ G+ D+ + LV+VT++
Sbjct: 82 SVNEEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVGETDERGKELVRVTRE 141
Query: 191 CLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDH 250
L KAI + PG+ + IQ+ + + V+R +VGHG+GR H DP + +Y
Sbjct: 142 VLEKAIKMIKPGIRLGDVSHCIQETVESVGFNVIRDYVGHGVGRELHEDPQIPNYGTPGT 201
Query: 251 GRMVLNQ--TFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 308
G +VL + T IEPM++ G V+ +D WT VT DGS A FEHTILIT +GAEILT+
Sbjct: 202 G-VVLRKGMTLAIEPMVSEGDWRVVVKEDGWTAVTVDGSRCAHFEHTILITENGAEILTK 260
>pdb|3TB5|A Chain A, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
pdb|3TB5|B Chain B, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
pdb|3TB5|C Chain C, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
Length = 264
Score = 172 bits (435), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/237 (39%), Positives = 130/237 (54%), Gaps = 1/237 (0%)
Query: 72 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 131
IE M SG L A V + T +KPGIT+ +I+ V I +G + +GY G+ + C
Sbjct: 10 IEMMDESGELLADVHRHLRTFIKPGITSWDIEVFVRDFIESHGGVAAQIGYEGYKYATCC 69
Query: 132 SVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDC 191
S+N+ ICHG P + L+DGD I +D+ V L G D+ ++ G+ E L++VTK
Sbjct: 70 SINDEICHGFPRKKVLKDGDLIKVDMCVDLKGAISDSCWSYVVGESTPEIDRLMEVTKKA 129
Query: 192 LHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHG 251
L+ I G IG IQ + + YGVVR FVGHGIG H P++ HY G
Sbjct: 130 LYLGIEQAQVGNRIGDIGHAIQTYVEGEGYGVVRDFVGHGIGPTIHESPMIPHYGEAGKG 189
Query: 252 -RMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 307
R+ TIEPM+ G+ M + WT TEDG LS Q+EH++ IT++G ILT
Sbjct: 190 LRLKEGMVITIEPMVNTGTWRMKMDPNGWTAYTEDGGLSCQYEHSLAITKEGPRILT 246
>pdb|3TAV|A Chain A, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
pdb|3TAV|B Chain B, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
Length = 286
Score = 160 bits (405), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 132/245 (53%), Gaps = 10/245 (4%)
Query: 72 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 131
++ M +G + L K G++T E+D+ +I + GA PS LGY GFP S+C+
Sbjct: 40 LDAMAAAGSIVGAALVAVRDAAKAGVSTLELDQVAESVIREAGAVPSFLGYHGFPASICS 99
Query: 132 SVNECICHGIPDSRA-LEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKD 190
SVN+ + HGIP + A L DGD ++ID L+G+HGD++ TF G V L + T+
Sbjct: 100 SVNDQVVHGIPSATAVLADGDLVSIDCGAILDGWHGDSAWTFAVGTVIPSDEALSEATRL 159
Query: 191 CLHKAISVCAPGMEYKKIGKTI-------QDHADRYNYGVVRQFVGHGIGRVFHADPVVL 243
+ I+ PG + I + DR +G+V + GHGIGR H DP +
Sbjct: 160 SMEAGIAAMIPGNRLTDVSHAIELGTRAAEKQFDR-AFGIVDGYGGHGIGRSMHLDPFLP 218
Query: 244 HYRNNDHGRMV-LNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDG 302
+ G ++ + IEPMLT+G+ + D+WT+VT DGS +A +EHT+ +T G
Sbjct: 219 NEGAPGKGPLLAVGSVLAIEPMLTLGTTQTRVLADDWTVVTTDGSRAAHWEHTVAVTEAG 278
Query: 303 AEILT 307
ILT
Sbjct: 279 PRILT 283
>pdb|1QXW|A Chain A, Crystal Structure Of Staphyloccocus Aureus In Complex With
An Aminoketone Inhibitor 54135.
pdb|1QXY|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle 618
pdb|1QXZ|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle Inhibitor 119
Length = 252
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 124/246 (50%), Gaps = 3/246 (1%)
Query: 66 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGF 125
V E+ ++ ++ G + A+V KPGITT E+D ++ + GA +P+ F
Sbjct: 3 VKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENF 62
Query: 126 PKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLV 185
P C SVNE + HGIP R + +GD +NIDV+ NGY+ DT +F G+ DD + V
Sbjct: 63 PGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKV 122
Query: 186 -KVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPV-VL 243
V AI+ PG + IGK + + A + + V++ GHG+G H P VL
Sbjct: 123 CDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAHVL 182
Query: 244 HYRN-NDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDG 302
+Y + D + IEP ++ + + W T D S AQ EHT+++T+DG
Sbjct: 183 NYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHTVIVTKDG 242
Query: 303 AEILTQ 308
+ T+
Sbjct: 243 PILTTK 248
>pdb|1XGS|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGS|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1WKM|A Chain A, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1WKM|B Chain B, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1XGO|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
Length = 295
Score = 100 bits (249), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 109/202 (53%), Gaps = 16/202 (7%)
Query: 73 ECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTS 132
E + +G +A +V E A L +PG+ E+ +++ +MI++ G P+ FP V S
Sbjct: 4 EKLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPA------FP--VNLS 55
Query: 133 VNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTK 189
+NE H P D+ L++GD + IDV V+++G+ DT+ T G +DE L++ K
Sbjct: 56 INEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEEDE---LMEAAK 112
Query: 190 DCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRV-FHADPVVLH-YRN 247
+ L+ AISV G+E K++GK I++ + + + GH I R HA + + YR
Sbjct: 113 EALNAAISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIERYKLHAGISIPNIYRP 172
Query: 248 NDHGRMVLNQTFTIEPMLTIGS 269
+D+ + F IEP TIG+
Sbjct: 173 HDNYVLKEGDVFAIEPFATIGA 194
>pdb|2DFI|A Chain A, Crystal Structure Of Pf-Map(1-292)-C
pdb|2DFI|B Chain B, Crystal Structure Of Pf-Map(1-292)-C
Length = 301
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 109/202 (53%), Gaps = 16/202 (7%)
Query: 73 ECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTS 132
E + +G +A +V E A L +PG+ E+ +++ +MI++ G P+ FP V S
Sbjct: 4 EKLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPA------FP--VNLS 55
Query: 133 VNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTK 189
+NE H P D+ L++GD + IDV V+++G+ DT+ T G +DE L++ K
Sbjct: 56 INEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEEDE---LMEAAK 112
Query: 190 DCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRV-FHADPVVLH-YRN 247
+ L+ AISV G+E K++GK I++ + + + GH I R HA + + YR
Sbjct: 113 EALNAAISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIERYKLHAGISIPNIYRP 172
Query: 248 NDHGRMVLNQTFTIEPMLTIGS 269
+D+ + F IEP TIG+
Sbjct: 173 HDNYVLKEGDVFAIEPFATIGA 194
>pdb|1WY2|A Chain A, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
pdb|1WY2|B Chain B, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
Length = 351
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 102/245 (41%), Gaps = 26/245 (10%)
Query: 66 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGF 125
+ EK I+ + + +A + + A + G E+ V ++ NGA P F
Sbjct: 127 IKSEKEIKIIEKACEIADKAVMAAIEEITEGKKEREVAAKVEYLMKMNGA-EKP----AF 181
Query: 126 PKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLV 185
+ + + HG+ + +E GD + ID+ Y+ D + T G +++ + +
Sbjct: 182 DTIIASGYRSALPHGVASDKRIERGDLVVIDLGALYQHYNSDITRTIVVGSPNEKQKEIY 241
Query: 186 KVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYG-VVRQFVGHGIGRVFHADPVVLH 244
++ + KA+ PG+ K++ ++ Y YG +GHG+G H P V
Sbjct: 242 EIVLEAQKKAVESAKPGITAKELDSIARNIIAEYGYGEYFNHSLGHGVGLEVHEWPRVSQ 301
Query: 245 YRNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAE 304
Y D + TIEP + I I V + E TILIT++G++
Sbjct: 302 Y---DETVLREGMVITIEPGIYIPKIGGV-----------------RIEDTILITKNGSK 341
Query: 305 ILTQC 309
LT+
Sbjct: 342 RLTKT 346
>pdb|1PV9|A Chain A, Prolidase From Pyrococcus Furiosus
pdb|1PV9|B Chain B, Prolidase From Pyrococcus Furiosus
Length = 348
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 99/239 (41%), Gaps = 26/239 (10%)
Query: 72 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 131
IE + + +A + + A + G E+ V ++ NGA P F + +
Sbjct: 130 IEIIEKACEIADKAVMAAIEEITEGKREREVAAKVEYLMKMNGA-EKP----AFDTIIAS 184
Query: 132 SVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDC 191
+ HG+ + +E GD + ID+ N Y+ D + T G +++ R + ++ +
Sbjct: 185 GHRSALPHGVASDKRIERGDLVVIDLGALYNHYNSDITRTIVVGSPNEKQREIYEIVLEA 244
Query: 192 LHKAISVCAPGMEYKKIGKTIQDHADRYNYG-VVRQFVGHGIGRVFHADPVVLHYRNNDH 250
+A+ PGM K++ ++ Y YG +GHG+G H P + Y D
Sbjct: 245 QKRAVEAAKPGMTAKELDSIAREIIKEYGYGDYFIHSLGHGVGLEIHEWPRISQY---DE 301
Query: 251 GRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQC 309
+ TIEP + I + V +D T+LIT +GA+ LT+
Sbjct: 302 TVLKEGMVITIEPGIYIPKLGGVRIED-----------------TVLITENGAKRLTKT 343
>pdb|3Q6D|A Chain A, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|B Chain B, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|C Chain C, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|D Chain D, Xaa-Pro Dipeptidase From Bacillus Anthracis
Length = 356
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 14/219 (6%)
Query: 72 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 131
I+ ++ + ++A E+ + ++PG++ E+ + + GA S F V +
Sbjct: 136 IKILKEAAQIADAAFEHILSFIRPGVSEIEVSNELEFFMRKQGATSSS-----FDIIVAS 190
Query: 132 SVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDC 191
+ + HG+ + +E GD + +D Y GY D + T G+ D+ + + + +
Sbjct: 191 GLRSALPHGVASEKVIETGDFVTLDFGAYYKGYCSDITRTIAVGEPSDKLKEIYNIVLEA 250
Query: 192 LHKAISVCAPGMEYKKIGKTIQDHADRYNYG-VVRQFVGHGIGRVFHADPVVLHYRNNDH 250
+ ++ G+ ++ +D+ YG GHGIG H P L +R++
Sbjct: 251 QLRGVNGIKAGLTGREADALTRDYITEKGYGEYFGHSTGHGIGLEIHEAP-GLAFRSD-- 307
Query: 251 GRMVLN--QTFTIEPMLTIGSINPVMWDDNWTIVTEDGS 287
VL T+EP + I I V +D+ IVT +G+
Sbjct: 308 --TVLEPGMAVTVEPGIYIPGIGGVRIEDD-IIVTSEGN 343
>pdb|1WN1|A Chain A, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|1WN1|B Chain B, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|2HOW|A Chain A, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
pdb|2HOW|B Chain B, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
Length = 356
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 100/240 (41%), Gaps = 22/240 (9%)
Query: 66 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMI--IDNGAYPSPLGYG 123
+ D++ ++ M + R+A +V E T G+ E+ + +I + +G P+
Sbjct: 131 IKDKEEVKMMEHASRIADKVFEEILTWDLIGMKERELALKIELLIRELSDGIAFEPI--- 187
Query: 124 GFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARN 183
V + N H P R + GD I +D GY D + T G++D+
Sbjct: 188 -----VASGENAANPHHEPGERKIRKGDIIILDYGARWKGYCSDITRTIGLGELDERLVK 242
Query: 184 LVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFV---GHGIGRVFHADP 240
+ +V KD A G++ K + ++ + YG F+ GHG+G H +P
Sbjct: 243 IYEVVKDAQESAFKAVREGIKAKDVDSRAREVISKAGYG--EYFIHRTGHGLGLDVHEEP 300
Query: 241 VVLHYRNNDHGRMVLN--QTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILI 298
+ G ++L TFTIEP + + + V +D+ + G + E ++I
Sbjct: 301 YI-----GPDGEVILKNGMTFTIEPGIYVPGLGGVRIEDDIVVDEGKGRRLTKAERELII 355
>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
pdb|2ZSG|B Chain B, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
Length = 359
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 95/246 (38%), Gaps = 32/246 (13%)
Query: 66 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGF 125
V DE IE ++ + ++ + ++ G+T EI + + GA F
Sbjct: 133 VKDEGEIEKIKQAIEISERAFLETVQQIRAGMTEKEIAALLEYTMRKEGAEGVA-----F 187
Query: 126 PKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLV 185
V + + HG + +E GD I ID Y D + G+ DE + +
Sbjct: 188 DTIVASGCRSALPHGKASDKVVERGDVIVIDFGATYENYCADITRVVSIGEPSDEVKEVH 247
Query: 186 KVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQF----VGHGIGRVFHADPV 241
+ + +A+ + G+ K + ++ YG +F +GHGIG H P
Sbjct: 248 SIVLEAQERALKIAKAGVTGKLLDSVAREFIREKGYG---EFFGHSLGHGIGLEVHEGPA 304
Query: 242 VLHYRNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRD 301
+ +RN+ + N FT+EP + + +G + E +++
Sbjct: 305 I-SFRNDSP--LPENVVFTVEPGIYL-----------------EGKFGIRIEEDVVLKEQ 344
Query: 302 GAEILT 307
G EILT
Sbjct: 345 GCEILT 350
>pdb|4EGE|A Chain A, Crystal Structure Of Dipeptidase Pepe From Mycobacterium
Ulcerans
Length = 378
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 17/158 (10%)
Query: 139 HGIPDSRALEDGDTINIDVT-VYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAIS 197
HG D R L+ GD + +D+ Y GY+ D++ T+ GD + + A+
Sbjct: 218 HGYSD-RKLQVGDIVVVDIGGTYEPGYYSDSTRTYSIGDPSPDVAQQYSALQRAQRAAVD 276
Query: 198 VCAPGMEYKKIGKTIQDHADRYNYGVVRQFV---GHGIGRVFHADPVVLHYRNNDHGRMV 254
PG+ ++ +D + G+ FV GHGIG H +P ++ + +V
Sbjct: 277 AVRPGVTAAQVDAAARDV--LADAGLAEYFVHRTGHGIGLCVHEEPYIV---AGNELPLV 331
Query: 255 LNQTFTIEPMLTIGSINPVMWD---DNWTIVTEDGSLS 289
F+IEP G P W ++ +VTE+G+LS
Sbjct: 332 AGMAFSIEP----GIYFPGRWGARIEDIVVVTENGALS 365
>pdb|1B59|A Chain A, Complex Of Human Methionine Aminopeptidase-2 Complexed
With Ovalicin
Length = 370
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 85/213 (39%), Gaps = 28/213 (13%)
Query: 75 MRVSGRLAAQVLEYAGTLVKPGITTDEI----DKAVHQMIIDNGAYPSPLGYG-GFPKSV 129
R + QV +Y + +KPG+T EI + ++I +NG L G FP
Sbjct: 61 FREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENG-----LNAGLAFPTGC 115
Query: 130 CTSVNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVK 186
S+N C H P D+ L+ D ID +++G D + T + + L+K
Sbjct: 116 --SLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTV---TFNPKYDTLLK 170
Query: 187 VTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGV---------VRQFVGHGIGRV-F 236
KD + I + +G+ IQ+ + Y + +R GH IG+
Sbjct: 171 AVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQYRI 230
Query: 237 HADPVVLHYRNNDHGRMVLNQTFTIEPMLTIGS 269
HA V + + RM + + IE + G
Sbjct: 231 HAGKTVPIVKGGEATRMEEGEVYAIETFGSTGK 263
>pdb|1B6A|A Chain A, Human Methionine Aminopeptidase 2 Complexed With Tnp-470
Length = 478
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 85/212 (40%), Gaps = 28/212 (13%)
Query: 75 MRVSGRLAAQVLEYAGTLVKPGITTDEI----DKAVHQMIIDNGAYPSPLGYG-GFPKSV 129
R + QV +Y + +KPG+T EI + ++I +NG L G FP
Sbjct: 169 FREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENG-----LNAGLAFPTGC 223
Query: 130 CTSVNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVK 186
S+N C H P D+ L+ D ID +++G D + F + + L+K
Sbjct: 224 --SLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCA---FTVTFNPKYDTLLK 278
Query: 187 VTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGV---------VRQFVGHGIGRV-F 236
KD + I + +G+ IQ+ + Y + +R GH IG+
Sbjct: 279 AVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQYRI 338
Query: 237 HADPVVLHYRNNDHGRMVLNQTFTIEPMLTIG 268
HA V + + RM + + IE + G
Sbjct: 339 HAGKTVPIVKGGEATRMEEGEVYAIETFGSTG 370
>pdb|1QZY|A Chain A, Human Methionine Aminopeptidase In Complex With Bengamide
Inhibitor Laf153 And Cobalt
pdb|1KQ0|A Chain A, Human Methionine Aminopeptidase Type Ii In Complex With D-
Methionine
pdb|1KQ9|A Chain A, Human Methionine Aminopeptidase Type Ii In Complex With L-
Methionine
pdb|1BN5|A Chain A, Human Methionine Aminopeptidase 2
pdb|1BOA|A Chain A, Human Methionine Aminopeptidase 2 Complexed With
Angiogenesis Inhibitor Fumagillin
Length = 478
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 85/212 (40%), Gaps = 28/212 (13%)
Query: 75 MRVSGRLAAQVLEYAGTLVKPGITTDEI----DKAVHQMIIDNGAYPSPLGYG-GFPKSV 129
R + QV +Y + +KPG+T EI + ++I +NG L G FP
Sbjct: 169 FREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENG-----LNAGLAFPTGC 223
Query: 130 CTSVNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVK 186
S+N C H P D+ L+ D ID +++G D + F + + L+K
Sbjct: 224 --SLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCA---FTVTFNPKYDTLLK 278
Query: 187 VTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGV---------VRQFVGHGIGRV-F 236
KD + I + +G+ IQ+ + Y + +R GH IG+
Sbjct: 279 AVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQYRI 338
Query: 237 HADPVVLHYRNNDHGRMVLNQTFTIEPMLTIG 268
HA V + + RM + + IE + G
Sbjct: 339 HAGKTVPIIKGGEATRMEEGEVYAIETFGSTG 370
>pdb|1R58|A Chain A, Crystal Structure Of Metap2 Complexed With A357300
pdb|1R5G|A Chain A, Crystal Structure Of Metap2 Complexed With A311263
pdb|1R5H|A Chain A, Crystal Structure Of Metap2 Complexed With A320282
pdb|2ADU|A Chain A, Human Methionine Aminopeptidase Complex With 4-Aryl-1,2,3-
Triazole Inhibitor
pdb|1YW7|A Chain A, H-Metap2 Complexed With A444148
pdb|1YW8|A Chain A, H-Metap2 Complexed With A751277
pdb|1YW9|A Chain A, H-Metap2 Complexed With A849519
pdb|2GA2|A Chain A, H-Metap2 Complexed With A193400
pdb|2OAZ|A Chain A, Human Methionine Aminopeptidase-2 Complexed With Sb-587094
pdb|2EA2|A Chain A, H-Metap2 Complexed With A773812
pdb|2EA4|A Chain A, H-Metap2 Complexed With A797859
Length = 369
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 85/213 (39%), Gaps = 28/213 (13%)
Query: 75 MRVSGRLAAQVLEYAGTLVKPGITTDEI----DKAVHQMIIDNGAYPSPLGYG-GFPKSV 129
R + QV +Y + +KPG+T EI + ++I +NG L G FP
Sbjct: 60 FREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENG-----LNAGLAFPTGC 114
Query: 130 CTSVNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVK 186
S+N C H P D+ L+ D ID +++G D + F + + L+K
Sbjct: 115 --SLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCA---FTVTFNPKYDTLLK 169
Query: 187 VTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGV---------VRQFVGHGIGRV-F 236
KD + I + +G+ IQ+ + Y + +R GH IG+
Sbjct: 170 AVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQYRI 229
Query: 237 HADPVVLHYRNNDHGRMVLNQTFTIEPMLTIGS 269
HA V + + RM + + IE + G
Sbjct: 230 HAGKTVPIIKGGEATRMEEGEVYAIETFGSTGK 262
>pdb|2V3Z|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 8/133 (6%)
Query: 72 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGA-YPSPLGYGGFPKSVC 130
I +R +G + A A +PG+ ++ +H +GA YPS + V
Sbjct: 181 IAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTIVG 234
Query: 131 TSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATF-FCGDVDDEARNLVKVTK 189
+ N CI H + + DGD + ID GY GD + TF G R + +
Sbjct: 235 SGENGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVL 294
Query: 190 DCLHKAISVCAPG 202
+ L ++ + PG
Sbjct: 295 ESLETSLRLYRPG 307
>pdb|1WL9|A Chain A, Structure Of Aminopeptidase P From E. Coli
pdb|1W2M|A Chain A, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|B Chain B, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|C Chain C, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|D Chain D, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|E Chain E, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|F Chain F, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W7V|A Chain A, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|B Chain B, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|C Chain C, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|D Chain D, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|A Chain A, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|B Chain B, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|C Chain C, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|D Chain D, Zn Mg Substituted Aminopeptidase P From E. Coli
Length = 440
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 8/133 (6%)
Query: 72 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGA-YPSPLGYGGFPKSVC 130
I +R +G + A A +PG+ ++ +H +GA YPS + V
Sbjct: 181 IAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTIVG 234
Query: 131 TSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATF-FCGDVDDEARNLVKVTK 189
+ N CI H + + DGD + ID GY GD + TF G R + +
Sbjct: 235 SGENGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVL 294
Query: 190 DCLHKAISVCAPG 202
+ L ++ + PG
Sbjct: 295 ESLETSLRLYRPG 307
>pdb|2BWV|A Chain A, His361ala Escherichia Coli Aminopeptidase P
pdb|2V3Y|A Chain A, His361ala Escherichia Coli Aminopeptidase P In Complex
With Product
Length = 440
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 91/254 (35%), Gaps = 32/254 (12%)
Query: 72 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGA-YPSPLGYGGFPKSVC 130
I +R +G + A A +PG+ ++ +H +GA YPS + V
Sbjct: 181 IAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTIVG 234
Query: 131 TSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATF-FCGDVDDEARNLVKVTK 189
+ N CI H + + DGD + ID GY GD + TF G R + +
Sbjct: 235 SGENGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVL 294
Query: 190 DCLHKAISVCAPGME---------------YKKIGKTIQDHADRYNYGVVRQFVGHGIGR 234
+ L ++ + PG K+G D + R F HG+
Sbjct: 295 ESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSH 354
Query: 235 VFHADPVVLHYRNNDHGRMVL-NQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFE 293
D + D R++ T+EP L I + + + + + E
Sbjct: 355 WLGLDVADVGVYGQDRSRILEPGMVLTVEPGLYIAP--------DAEVPEQYRGIGIRIE 406
Query: 294 HTILITRDGAEILT 307
I+IT G E LT
Sbjct: 407 DDIVITETGNENLT 420
>pdb|2V6C|A Chain A, Crystal Structure Of Erbb3 Binding Protein 1 (Ebp1)
Length = 353
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/162 (19%), Positives = 71/162 (43%), Gaps = 18/162 (11%)
Query: 124 GFPKSVCTSVNECICHGIP----DSRALEDGDTINIDVTVYLNGYHGDTSATFFCG---- 175
FP S+ SVN C+CH P L++GD + ID+ V+++G+ + + TF G
Sbjct: 68 AFPTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVIGVAQG 125
Query: 176 -DVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIG- 233
V +++K C A+ + PG + ++ + A +N + + H +
Sbjct: 126 TQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPIEGMLSHQLKQ 185
Query: 234 ------RVFHADPVVLHYRNNDHGRMVLNQTFTIEPMLTIGS 269
+ +P ++++ +++ + ++ +++ G
Sbjct: 186 HVIDGEKTIIQNPTDQQKKDHEKAEFEVHEVYAVDVLVSSGE 227
>pdb|1JAW|A Chain A, Aminopeptidase P From E. Coli Low Ph Form
Length = 440
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 8/133 (6%)
Query: 72 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGA-YPSPLGYGGFPKSVC 130
I +R +G + A A +PG+ ++ +H +GA YPS + V
Sbjct: 181 IAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTIVG 234
Query: 131 TSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATF-FCGDVDDEARNLVKVTK 189
+ N CI H + + DGD + ID GY GD + TF G R + +
Sbjct: 235 SGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVL 294
Query: 190 DCLHKAISVCAPG 202
+ L ++ + PG
Sbjct: 295 ESLETSLRLYRPG 307
>pdb|1M35|A Chain A, Aminopeptidase P From Escherichia Coli
pdb|1M35|B Chain B, Aminopeptidase P From Escherichia Coli
pdb|1M35|C Chain C, Aminopeptidase P From Escherichia Coli
pdb|1M35|D Chain D, Aminopeptidase P From Escherichia Coli
pdb|1M35|E Chain E, Aminopeptidase P From Escherichia Coli
pdb|1M35|F Chain F, Aminopeptidase P From Escherichia Coli
pdb|1N51|A Chain A, Aminopeptidase P In Complex With The Inhibitor Apstatin
pdb|1WL6|A Chain A, Mg-Substituted Form Of E. Coli Aminopeptidase P
pdb|1WLR|A Chain A, Apo Aminopeptidase P From E. Coli
pdb|2BHA|A Chain A, E. Coli Aminopeptidase P In Complex With Substrate
pdb|2BHB|A Chain A, Zn Substituted E. Coli Aminopeptidase P
pdb|2BHC|A Chain A, Na Substituted E. Coli Aminopeptidase P
pdb|2BHD|A Chain A, Mg Substituted E. Coli Aminopeptidase P In Complex With
Product
pdb|1A16|A Chain A, Aminopeptidase P From E. Coli With The Inhibitor Pro-Leu
pdb|2BH3|A Chain A, Zn Substituted E.Coli Aminopeptidase P In Complex With
Product
pdb|2BN7|A Chain A, Mn Substituted E. Coli Aminopeptidase P In Complex With
Product And Zn
Length = 440
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 8/133 (6%)
Query: 72 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGA-YPSPLGYGGFPKSVC 130
I +R +G + A A +PG+ ++ +H +GA YPS + V
Sbjct: 181 IAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTIVG 234
Query: 131 TSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATF-FCGDVDDEARNLVKVTK 189
+ N CI H + + DGD + ID GY GD + TF G R + +
Sbjct: 235 SGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVL 294
Query: 190 DCLHKAISVCAPG 202
+ L ++ + PG
Sbjct: 295 ESLETSLRLYRPG 307
>pdb|2BWY|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 8/133 (6%)
Query: 72 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGA-YPSPLGYGGFPKSVC 130
I +R +G + A A +PG+ ++ +H +GA YPS + V
Sbjct: 181 IAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTIVG 234
Query: 131 TSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATF-FCGDVDDEARNLVKVTK 189
+ N CI H + + DGD + ID GY GD + TF G R + +
Sbjct: 235 SGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVL 294
Query: 190 DCLHKAISVCAPG 202
+ L ++ + PG
Sbjct: 295 ESLETSLRLYRPG 307
>pdb|2BWW|A Chain A, His350ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 8/133 (6%)
Query: 72 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGA-YPSPLGYGGFPKSVC 130
I +R +G + A A +PG+ ++ +H +GA YPS + V
Sbjct: 181 IAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTIVG 234
Query: 131 TSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATF-FCGDVDDEARNLVKVTK 189
+ N CI H + + DGD + ID GY GD + TF G R + +
Sbjct: 235 SGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVL 294
Query: 190 DCLHKAISVCAPG 202
+ L ++ + PG
Sbjct: 295 ESLETSLRLYRPG 307
>pdb|2BWS|A Chain A, His243ala Escherichia Coli Aminopeptidase P
pdb|2V3X|A Chain A, His243ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 8/133 (6%)
Query: 72 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGA-YPSPLGYGGFPKSVC 130
I +R +G + A A +PG+ ++ +H +GA YPS + V
Sbjct: 181 IAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTIVG 234
Query: 131 TSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATF-FCGDVDDEARNLVKVTK 189
+ N CI + + DGD + ID GY GD + TF G R + +
Sbjct: 235 SGENGCILAYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVL 294
Query: 190 DCLHKAISVCAPG 202
+ L ++ + PG
Sbjct: 295 ESLETSLRLYRPG 307
>pdb|2Q8K|A Chain A, The Crystal Structure Of Ebp1
Length = 401
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/162 (18%), Positives = 70/162 (43%), Gaps = 18/162 (11%)
Query: 124 GFPKSVCTSVNECICHGIP----DSRALEDGDTINIDVTVYLNGYHGDTSATFFCG---- 175
FP S+ SVN C+CH P L++GD + ID+ V+++G+ + + TF
Sbjct: 82 AFPTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVVDVAQG 139
Query: 176 -DVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIG- 233
V +++K C A+ + PG + ++ + A +N + + H +
Sbjct: 140 TQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPIEGMLSHQLKQ 199
Query: 234 ------RVFHADPVVLHYRNNDHGRMVLNQTFTIEPMLTIGS 269
+ +P ++++ +++ + ++ +++ G
Sbjct: 200 HVIDGEKTIIQNPTDQQKKDHEKAEFEVHEVYAVDVLVSSGE 241
>pdb|3J2I|A Chain A, Structure Of Late Pre-60s Ribosomal Subunits With Nuclear
Export Factor Arx1 Bound At The Peptide Exit Tunnel
Length = 394
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/162 (18%), Positives = 70/162 (43%), Gaps = 18/162 (11%)
Query: 124 GFPKSVCTSVNECICHGIP----DSRALEDGDTINIDVTVYLNGYHGDTSATFFCG---- 175
FP S+ SVN C+CH P L++GD + ID+ V+++G+ + + TF
Sbjct: 75 AFPTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVVDVAQG 132
Query: 176 -DVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIG- 233
V +++K C A+ + PG + ++ + A +N + + H +
Sbjct: 133 TQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPIEGMLSHQLKQ 192
Query: 234 ------RVFHADPVVLHYRNNDHGRMVLNQTFTIEPMLTIGS 269
+ +P ++++ +++ + ++ +++ G
Sbjct: 193 HVIDGEKTIIQNPTDQQKKDHEKAEFEVHEVYAVDVLVSSGE 234
>pdb|2BWT|A Chain A, Asp260ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 8/133 (6%)
Query: 72 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGA-YPSPLGYGGFPKSVC 130
I +R +G + A A +PG+ ++ +H +GA YPS + V
Sbjct: 181 IAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTIVG 234
Query: 131 TSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATF-FCGDVDDEARNLVKVTK 189
+ N CI H + + DGD + I GY GD + TF G R + +
Sbjct: 235 SGENGCILHYTENECEMRDGDLVLIAAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVL 294
Query: 190 DCLHKAISVCAPG 202
+ L ++ + PG
Sbjct: 295 ESLETSLRLYRPG 307
>pdb|2BWU|A Chain A, Asp271ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 8/133 (6%)
Query: 72 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGA-YPSPLGYGGFPKSVC 130
I +R +G + A A +PG+ ++ +H +GA YPS + V
Sbjct: 181 IAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTIVG 234
Query: 131 TSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATF-FCGDVDDEARNLVKVTK 189
+ N CI H + + DGD + ID GY G + TF G R + +
Sbjct: 235 SGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGAITRTFPVNGKFTQAQREIYDIVL 294
Query: 190 DCLHKAISVCAPG 202
+ L ++ + PG
Sbjct: 295 ESLETSLRLYRPG 307
>pdb|2BWX|A Chain A, His354ala Escherichia Coli Aminopeptidase P
Length = 441
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)
Query: 72 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGA-YPSPLGYGGFPKSVC 130
I +R +G + A A +PG+ ++ +H +GA YPS + V
Sbjct: 181 IAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTIVG 234
Query: 131 TSVNECICHGIPDS-RALEDGDTINIDVTVYLNGYHGDTSATF-FCGDVDDEARNLVKVT 188
+ N CI H + + DGD + ID GY GD + TF G R + +
Sbjct: 235 SGENGCILHYTENECXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIV 294
Query: 189 KDCLHKAISVCAPG 202
+ L ++ + PG
Sbjct: 295 LESLETSLRLYRPG 308
>pdb|3IG4|A Chain A, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|B Chain B, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|C Chain C, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|D Chain D, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|E Chain E, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|F Chain F, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
Length = 427
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 85/212 (40%), Gaps = 49/212 (23%)
Query: 117 PSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATF-FCG 175
S + + F + + N + H + +++GD + +D+ + Y+ D S TF G
Sbjct: 217 SSGIKHHAFNTILASGKNATVLHYEDNDAQIQNGDLVLLDLGAQKDYYNADISYTFPANG 276
Query: 176 DVDDEARNLVKVTKDCLHKAISVCAPGMEY---------------KKIGKTIQDHA-DRY 219
+ + + + L + + PG+++ K +G +D +Y
Sbjct: 277 TFSSRQKQIYNIVLNALKETTEIIKPGLKFAALNEHAKKVLAEGCKAVGLIQEDEELSKY 336
Query: 220 NYGVVRQFVG---HGIGRVFHADPVVLHYRNNDHGRMVLNQTFTIEPMLTIGSINPVMWD 276
Y V F+G H +G + D V+ + G ++ TIEP L I
Sbjct: 337 YYHGVSHFLGLDTHDVGT--YKDRVL------EEGXVI-----TIEPGLYI--------- 374
Query: 277 DNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 308
E+ S+ + E IL+T+DG E L++
Sbjct: 375 -------EEESIGIRIEDDILVTKDGHENLSK 399
>pdb|1CHM|A Chain A, Enzymatic Mechanism Of Creatine Amidinohydrolase As
Deduced From Crystal Structures
Length = 401
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/140 (17%), Positives = 55/140 (39%), Gaps = 3/140 (2%)
Query: 131 TSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKD 190
+ +N H +R + GD ++++ + GY+ T F D+ L +V +
Sbjct: 223 SGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQVNVE 282
Query: 191 CLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQF-VGHGIGRV--FHADPVVLHYRN 247
+ + PG I + + + +++ R F GH G + ++ L R
Sbjct: 283 VHEAGLKLIKPGARCSDIARELNEIFLKHDVLQYRTFGYGHSFGTLSHYYGREAGLELRE 342
Query: 248 NDHGRMVLNQTFTIEPMLTI 267
+ + ++EPM+ +
Sbjct: 343 DIDTVLEPGMVVSMEPMIML 362
>pdb|1CHM|B Chain B, Enzymatic Mechanism Of Creatine Amidinohydrolase As
Deduced From Crystal Structures
Length = 401
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/140 (17%), Positives = 55/140 (39%), Gaps = 3/140 (2%)
Query: 131 TSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKD 190
+ +N H +R + GD ++++ + GY+ T F D+ L +V +
Sbjct: 223 SGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQVNVE 282
Query: 191 CLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQF-VGHGIGRV--FHADPVVLHYRN 247
+ + PG I + + + +++ R F GH G + ++ L R
Sbjct: 283 VHEAGLKLIKPGARCSDIARELNEIFLKHDVLQYRTFGYGHSFGTLSHYYGREAGLELRE 342
Query: 248 NDHGRMVLNQTFTIEPMLTI 267
+ + ++EPM+ +
Sbjct: 343 DIDTVLEPGMVVSMEPMIML 362
>pdb|1KP0|A Chain A, The Crystal Structure Analysis Of Creatine
Amidinohydrolase From Actinobacillus
pdb|1KP0|B Chain B, The Crystal Structure Analysis Of Creatine
Amidinohydrolase From Actinobacillus
Length = 402
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/145 (20%), Positives = 57/145 (39%), Gaps = 8/145 (5%)
Query: 131 TSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKD 190
+ +N H R + GD ++++ + GY+ T F V D + +
Sbjct: 223 SGINTDGAHNPVTXRVVXRGDILSLNCFPMIFGYYTALERTLFLXXVXDASLXIWXKNTA 282
Query: 191 CLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDH 250
+ + + PG K I + ++ R F G+G H+ V+ HY +
Sbjct: 283 VHRRGLXLIKPGARCKDIASELNXMYRXWDLLRYRTF-GYG-----HSFGVLXHYYGREA 336
Query: 251 GRMVLNQTFTI-EPMLTIGSINPVM 274
G + T+ EP + + S+ P++
Sbjct: 337 GVELREDIXTVLEPGMVV-SMEPMV 360
>pdb|3FM3|A Chain A, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2
pdb|3FM3|B Chain B, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2
pdb|3FMQ|A Chain A, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Fumagillin Bound
pdb|3FMQ|B Chain B, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Fumagillin Bound
pdb|3FMR|A Chain A, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Tnp470 Bound
pdb|3FMR|B Chain B, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Tnp470 Bound
Length = 358
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 285 DGSLSAQFEHTILITRDGAEILTQ 308
DG AQFEHT+ ++ G E+LT+
Sbjct: 331 DGCKVAQFEHTVYLSEHGKEVLTR 354
>pdb|3R3E|A Chain A, The Glutathione Bound Structure Of Yqjg, A Glutathione
Transferase Homolog From Escherichia Coli K-12
pdb|3R3E|B Chain B, The Glutathione Bound Structure Of Yqjg, A Glutathione
Transferase Homolog From Escherichia Coli K-12
pdb|4G0I|A Chain A, Glutathionyl-hydroquinone Reductase, Yqjg Of Escherichia
Coli
pdb|4G0I|B Chain B, Glutathionyl-hydroquinone Reductase, Yqjg Of Escherichia
Coli
pdb|4G0K|A Chain A, Glutathionyl-hydroquinone Reductase, Yqjg, Of E.coli
Complexed With Gs-menadione
pdb|4G0K|B Chain B, Glutathionyl-hydroquinone Reductase, Yqjg, Of E.coli
Complexed With Gs-menadione
pdb|4G0L|A Chain A, Glutathionyl-hydroquinone Reductase, Yqjg, Of E.coli
Complexed With Gsh
pdb|4G0L|B Chain B, Glutathionyl-hydroquinone Reductase, Yqjg, Of E.coli
Complexed With Gsh
Length = 328
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 8/32 (25%), Positives = 20/32 (62%)
Query: 250 HGRMVLNQTFTIEPMLTIGSINPVMWDDNWTI 281
H +++ + +EP +++ +NP+M ++ WT
Sbjct: 67 HRTLIMRKLKGLEPFISVSVVNPLMLENGWTF 98
>pdb|3QB0|A Chain A, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
pdb|3QB0|B Chain B, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
pdb|3QB0|C Chain C, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
pdb|3QB0|D Chain D, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
Length = 498
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 106 VHQMIIDNGAYPSPLGYGG--FPKSVCTSV 133
V ++ID G+Y + +GY G FP+S+ SV
Sbjct: 23 VSAVVIDPGSYTTNIGYSGSDFPQSILPSV 52
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,111,092
Number of Sequences: 62578
Number of extensions: 440193
Number of successful extensions: 1101
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 939
Number of HSP's gapped (non-prelim): 81
length of query: 309
length of database: 14,973,337
effective HSP length: 99
effective length of query: 210
effective length of database: 8,778,115
effective search space: 1843404150
effective search space used: 1843404150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)