BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021685
(309 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q38906|TOC34_ARATH Translocase of chloroplast 34, chloroplastic OS=Arabidopsis
thaliana GN=TOC34 PE=1 SV=2
Length = 313
Score = 455 bits (1170), Expect = e-127, Method: Compositional matrix adjust.
Identities = 215/310 (69%), Positives = 259/310 (83%), Gaps = 5/310 (1%)
Query: 4 ASQVIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEK 63
A Q +REW+GIQQFPPATQ+KLLE+LGK K+E+V++LT+LVMGKGGVGKSSTVNS+IGEK
Sbjct: 3 ALQTLREWIGIQQFPPATQSKLLEILGKYKEEDVSSLTVLVMGKGGVGKSSTVNSVIGEK 62
Query: 64 AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL 123
A VSTFQSEG RP +VSR+R+GFTLNI+DTPGLIEGGYVN AI +IKRFLLN TIDVL
Sbjct: 63 AAAVSTFQSEGLRPTLVSRTRSGFTLNIIDTPGLIEGGYVNDQAINIIKRFLLNMTIDVL 122
Query: 124 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSE 183
LYVDRLDVYRVD+LD+Q+ AITD FG++IWK++ +VLTHAQ S PD L+Y F SKRS
Sbjct: 123 LYVDRLDVYRVDDLDRQVVGAITDAFGKEIWKKSALVLTHAQFSPPDGLNYNHFVSKRSN 182
Query: 184 ALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEV 243
ALLK + +KK+D+QG +PV+LVENSGRC KNE+DEK+LP GT+WIPNL ITE+
Sbjct: 183 ALLKVIQTGAQLKKQDLQGFSIPVILVENSGRCHKNESDEKILPCGTSWIPNLFNKITEI 242
Query: 244 VLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKPVW- 302
NG+KA+ VDKKLVEGPNPNE+GK LIP +FAFQY ++KPL+RAIKSD ++E+KP W
Sbjct: 243 SFNGNKAIHVDKKLVEGPNPNERGKKLIPLMFAFQYLLVMKPLVRAIKSDVSRESKPAWE 302
Query: 303 ----ARASRR 308
ASRR
Sbjct: 303 LRDSGLASRR 312
>sp|Q41009|TOC34_PEA Translocase of chloroplast 34 OS=Pisum sativum GN=TOC34 PE=1 SV=1
Length = 310
Score = 432 bits (1111), Expect = e-120, Method: Compositional matrix adjust.
Identities = 207/302 (68%), Positives = 246/302 (81%), Gaps = 1/302 (0%)
Query: 1 MSMASQVIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSII 60
M+ Q +REW GI F PATQTKLLELLG LKQE+VN+LTILVMGKGGVGKSSTVNSII
Sbjct: 1 MASQQQTVREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSII 60
Query: 61 GEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120
GE+ V++S FQSEGPRPVMVSRSRAGFTLNI+DTPGLIEGGY+N A+ +IK FLL+KTI
Sbjct: 61 GERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTI 120
Query: 121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSK 180
DVLLYVDRLD YRVDNLDK + +AITD+FG+ IW +A++ LTHAQ S PD L Y+ F SK
Sbjct: 121 DVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK 180
Query: 181 RSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTI 240
RSEALL+ V + KKD Q S +PVVL+ENSGRC KN++DEKVLPNG AWIP+LV+TI
Sbjct: 181 RSEALLQVVRSGASL-KKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTI 239
Query: 241 TEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKP 300
TEV LN S+++ VDK L++GPNPN++GK+ IP IFA QY F+ KP+ I+ D A E KP
Sbjct: 240 TEVALNKSESIFVDKNLIDGPNPNQRGKLWIPLIFALQYLFLAKPIEALIRRDIATETKP 299
Query: 301 VW 302
W
Sbjct: 300 AW 301
>sp|O23680|TOC33_ARATH Translocase of chloroplast 33, chloroplastic OS=Arabidopsis
thaliana GN=TOC33 PE=1 SV=1
Length = 297
Score = 380 bits (976), Expect = e-105, Method: Compositional matrix adjust.
Identities = 180/295 (61%), Positives = 230/295 (77%), Gaps = 1/295 (0%)
Query: 7 VIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVT 66
++REW+G QQFP ATQ KL+E GKLKQ+++N++T+LV+GKGGVGKSSTVNS+IGE+ V
Sbjct: 4 LVREWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVR 63
Query: 67 VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYV 126
VS FQ+EG RPVMVSR+ GFT+NI+DTPGL+E GYVN+ A++LIK FL+N+TIDVLLYV
Sbjct: 64 VSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYV 123
Query: 127 DRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALL 186
DRLDVYRVD LDKQ+ AIT FG++IW + L+VLTHAQ S PD L YE F SKRS++LL
Sbjct: 124 DRLDVYRVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLL 183
Query: 187 KFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLN 246
K + + M+K++ + S + VV ENSGRC+KN+ DEK LPNG AWIPNLVK IT+V N
Sbjct: 184 KTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIPNLVKAITDVATN 243
Query: 247 GSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKPV 301
KA+ VDKK+V+G ++KGK LIP I QY I+K + AI++D KP+
Sbjct: 244 QRKAIHVDKKMVDGSYSDDKGKKLIPLIIGAQY-LIVKMIQGAIRNDIKTSGKPL 297
>sp|Q9LUS2|TC120_ARATH Translocase of chloroplast 120, chloroplastic OS=Arabidopsis
thaliana GN=TOC120 PE=1 SV=1
Length = 1089
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 111/207 (53%), Gaps = 13/207 (6%)
Query: 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI 98
+ TI+V+GK GVGKS+T+NSI E ++ FQ + + G + ++DTPGL+
Sbjct: 456 SCTIMVLGKSGVGKSATINSIFDELKISTDAFQVGTKKVQDIEGFVQGIKVRVIDTPGLL 515
Query: 99 ---EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWK 155
+ N ++ ++ F+ D++LY+DRLD+ D+ D + R ITD FG IW
Sbjct: 516 PSWSDQHKNEKILKSVRAFIKKSPPDIVLYLDRLDMQSRDSGDMPLLRTITDVFGPSIWF 575
Query: 156 RALIVLTHAQLSLPDRLD-----YEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLV 210
A++ LTHA + PD + Y++F ++RS + + + + + PV LV
Sbjct: 576 NAIVGLTHAASAPPDGPNGTASSYDMFVTQRSHVIQQAIRQAAGDMRL-----MNPVSLV 630
Query: 211 ENSGRCAKNENDEKVLPNGTAWIPNLV 237
EN C N ++VLPNG W P+L+
Sbjct: 631 ENHSACRTNRAGQRVLPNGQVWKPHLL 657
>sp|Q9SLF3|TC132_ARATH Translocase of chloroplast 132, chloroplastic OS=Arabidopsis
thaliana GN=TOC132 PE=1 SV=1
Length = 1206
Score = 115 bits (288), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 106/207 (51%), Gaps = 13/207 (6%)
Query: 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI 98
+ TI+V+GK GVGKS+T+NSI E FQ R V G + ++DTPGL+
Sbjct: 574 SCTIMVLGKSGVGKSATINSIFDEVKFCTDAFQMGTKRVQDVEGLVQGIKVRVIDTPGLL 633
Query: 99 ---EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWK 155
N + +K F+ D++LY+DRLD+ D+ D + R I+D FG IW
Sbjct: 634 PSWSDQAKNEKILNSVKAFIKKNPPDIVLYLDRLDMQSRDSGDMPLLRTISDVFGPSIWF 693
Query: 156 RALIVLTHAQLSLPDRLD-----YEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLV 210
A++ LTHA PD + Y++F ++RS + + + + + PV LV
Sbjct: 694 NAIVGLTHAASVPPDGPNGTASSYDMFVTQRSHVIQQAIRQAAGDMRL-----MNPVSLV 748
Query: 211 ENSGRCAKNENDEKVLPNGTAWIPNLV 237
EN C N ++VLPNG W P+L+
Sbjct: 749 ENHSACRTNRAGQRVLPNGQVWKPHLL 775
>sp|Q552Z6|GTPA_DICDI GTP-binding protein A OS=Dictyostelium discoideum GN=gtpA PE=3 SV=1
Length = 449
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 125/239 (52%), Gaps = 18/239 (7%)
Query: 21 TQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMV 80
T +L E+L LK N +L++G+ GVGKSST+N++ G + V + +S P
Sbjct: 134 TTEELQEMLAVLKGVQ-NECNVLLLGRTGVGKSSTLNTVFG-IDIPVHSSESCTQDPFTY 191
Query: 81 SRSRAGFTLNIVDTPGLIE--GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLD 138
SR GF LNI+DTPG ++ G V+ + + I+R+L KTI +L+V++ R D
Sbjct: 192 SRVVNGFKLNIIDTPGFLDSQGELVDSNNMIKIQRYLSGKTIHCVLFVEKFTETRFDGAH 251
Query: 139 KQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSK------------RSEALL 186
+ + T+ G Q+W+ A +VLT+A LPD Y+ F + R+
Sbjct: 252 QLVINQFTEKLGPQLWRNAAVVLTYANSVLPDSC-YDGFDEEDDVGPWKKHYEARALQFR 310
Query: 187 KFVSP-STWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVV 244
KF + + + D +PV +ENS RC +NE ++VL +GT + L+ + ++V
Sbjct: 311 KFFAGILAQLPQDDYPPKHIPVYAMENSRRCKRNEQGQRVLIDGTPCLHLLISGLLKMV 369
>sp|O81283|TC159_ARATH Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana
GN=TOC159 PE=1 SV=1
Length = 1503
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 115/236 (48%), Gaps = 28/236 (11%)
Query: 20 ATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVM 79
A + K +E + +E + +L ILV+GK GVGKS+T+NSI+G + ++ F
Sbjct: 836 AAKKKAVESEAEGNEELIFSLNILVLGKAGVGKSATINSILGNQIASIDAFGLSTTSVRE 895
Query: 80 VSRSRAGFTLNIVDTPGLIEGGY---VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDN 136
+S + G + +DTPGL N + +K+ + D++LYVDRLD D
Sbjct: 896 ISGTVNGVKITFIDTPGLKSAAMDQSTNAKMLSSVKKVMKKCPPDIVLYVDRLDTQTRDL 955
Query: 137 LDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR-----LDYEVFCSKRSEAL------ 185
+ + R IT + G IWK A++ LTHA + PD L Y+VF ++ S +
Sbjct: 956 NNLPLLRTITASLGTSIWKNAIVTLTHAASAPPDGPSGTPLSYDVFVAQCSHIVQQSIGQ 1015
Query: 186 ----LKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLV 237
L+ ++PS PV LVEN C KN KVLPNG W L+
Sbjct: 1016 AVGDLRLMNPSLMN----------PVSLVENHPLCRKNREGVKVLPNGQTWRSQLL 1061
>sp|Q6S5G3|TOC90_ARATH Translocase of chloroplast 90, chloroplastic OS=Arabidopsis
thaliana GN=TOC90 PE=1 SV=1
Length = 793
Score = 108 bits (270), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 106/207 (51%), Gaps = 13/207 (6%)
Query: 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL- 97
+L ILV+GK GVGKS+T+NSI G+ F+ R V + +G + +DTPG
Sbjct: 166 SLRILVLGKTGVGKSATINSIFGQPKSETDAFRPGTDRIEEVMGTVSGVKVTFIDTPGFH 225
Query: 98 ---IEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIW 154
N + IKR++ + DV+LY+DRLD+ + D + + IT+ FG IW
Sbjct: 226 PLSSSSTRKNRKILLSIKRYVKKRPPDVVLYLDRLDMIDMRYSDFSLLQLITEIFGAAIW 285
Query: 155 KRALIVLTHAQLSLPDR----LDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLV 210
++V+TH+ + R ++YE + +R + + ++ + K + PV+LV
Sbjct: 286 LNTILVMTHSAATTEGRNGQSVNYESYVGQRMDVVQHYIHQAVSDTKLE-----NPVLLV 340
Query: 211 ENSGRCAKNENDEKVLPNGTAWIPNLV 237
EN C KN E VLPNG W P +
Sbjct: 341 ENHPSCKKNLAGEYVLPNGVVWKPQFM 367
>sp|Q6P9H5|GIMA6_HUMAN GTPase IMAP family member 6 OS=Homo sapiens GN=GIMAP6 PE=2 SV=1
Length = 292
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 19/163 (11%)
Query: 15 QQFPPA--TQTKLLELLGKLKQENVNT---LTILVMGKGGVGKSSTVNSIIGEKAVTVST 69
Q+ PP +Q +LEL G L+++ T L +++MGK G GKS+T NSI+G
Sbjct: 11 QENPPEELSQDPVLELSGGLREKEQKTPRRLRLILMGKTGSGKSATGNSILGR-----DV 65
Query: 70 FQSE-GPRPVM-----VSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK-TIDV 122
F+S+ RPV SR AG L ++DTP ++ A + + +L+
Sbjct: 66 FESKLSTRPVTKTSQRRSREWAGKELEVIDTPNILSPQVSPEVADAICQAIVLSAPGPHA 125
Query: 123 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165
+L V +L R + D+Q+ R + + FG + ++V T +
Sbjct: 126 VLLVTQLG--RFTDEDQQVVRRLQEVFGVGVLGHTILVFTRKE 166
>sp|P70224|GIMA1_MOUSE GTPase IMAP family member 1 OS=Mus musculus GN=Gimap1 PE=1 SV=3
Length = 277
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 14/148 (9%)
Query: 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPV-----MVSRSRAGFTLNIVDT 94
L ++++G+ G GKS+T NSI+G+K G PV + SR AG+ + +VDT
Sbjct: 4 LRLILVGRTGTGKSATGNSILGQKCF----LSRLGAVPVTRSCTLASRMWAGWQVEVVDT 59
Query: 95 PGLI--EGGYVNYHAIQLIKRFLLNK-TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE 151
P + E + ++ + F+L+ LL V +L + + D Q A+ FG+
Sbjct: 60 PDIFSSEIPRTDPGCVETARCFVLSAPGPHALLLVTQLGRFTMQ--DSQALAAVKRLFGK 117
Query: 152 QIWKRALIVLTHAQLSLPDRLDYEVFCS 179
Q+ R ++V T + D L V C+
Sbjct: 118 QVMARTVVVFTRQEDLAGDSLQDYVHCT 145
>sp|Q99JY3|GIMA4_MOUSE GTPase IMAP family member 4 OS=Mus musculus GN=Gimap4 PE=1 SV=1
Length = 219
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
Query: 33 KQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLN 90
+ + + L I+++GK G GKSST NSI+GEK V S ++ V R G L
Sbjct: 24 QDQGIPQLRIVLLGKTGAGKSSTGNSILGEK-VFNSGICAKSITKVCEKRVSTWDGKELV 82
Query: 91 IVDTPGLIEGGYVNYHAIQLIKRF--LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDN 148
+VDTPG+ + + + I R+ L + LL V L Y V+ + + T+ I D
Sbjct: 83 VVDTPGIFDTEVPDADTQREITRYVALTSPGPHALLLVVPLGRYTVE--EHKATQKILDM 140
Query: 149 FGEQIWKRALIVLT 162
FG+Q + +++LT
Sbjct: 141 FGKQARRFMILLLT 154
>sp|A5PKB7|GIMA6_BOVIN GTPase IMAP family member 6 OS=Bos taurus GN=GIMAP6 PE=2 SV=1
Length = 341
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 17/136 (12%)
Query: 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVS-----RSRAGFTL 89
+ TL ++++GK G GKS+T NSI+G + F+S+ RPV + R+ G L
Sbjct: 90 TLQTLWLILVGKSGSGKSATGNSILGRR-----VFESKLSARPVTQAFQQGCRAWEGREL 144
Query: 90 NIVDTPGLIE---GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAIT 146
++DTP ++ G+ + L K VLL + R D+Q+ +
Sbjct: 145 QVIDTPDILSPWAAGWATAQGVGEAGTGSLPKQYAVLLVT---QLGRFTEEDQQVAGRLE 201
Query: 147 DNFGEQIWKRALIVLT 162
+ FG+ I R ++V T
Sbjct: 202 EVFGKGILARTILVFT 217
>sp|Q8ND71|GIMA8_HUMAN GTPase IMAP family member 8 OS=Homo sapiens GN=GIMAP8 PE=1 SV=2
Length = 665
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 20/178 (11%)
Query: 18 PPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRP 77
P + + L+ G + + LT+L++GK G GKS+ NSI+G +A F +
Sbjct: 226 PQGPRERQLQSTGPEQNPGTSELTVLLVGKRGAGKSAAGNSILGRQAFQTG-FSEQSVTQ 284
Query: 78 VMVSRSRA--GFTLNIVDTPGLIE----GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDV 131
+S SR+ ++I+D P + V H FLL V L
Sbjct: 285 SFLSESRSWRKKKVSIIDAPDISSLKNIDSEVRKHICTGPHAFLL---------VTPLGF 335
Query: 132 YRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFV 189
Y + D+ + I +NFGE+ ++ +I+LT + L D+ D + F ++AL +
Sbjct: 336 YTKN--DEAVLSTIQNNFGEKFFEYMIILLTRKE-DLGDQ-DLDTFLRNSNKALYGLI 389
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 66/156 (42%), Gaps = 15/156 (9%)
Query: 24 KLLELLGKLKQENVN---------TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEG 74
+LLE + + +N N TL I+++G+ G GKS+T NSI+G V S +++
Sbjct: 414 ELLEKIESMVHQNGNKHCVFREKETLNIVLVGRSGTGKSATGNSILG-SLVFTSRLRAQP 472
Query: 75 PRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQL---IKRFLLNKTIDVLLYVDRL 129
S R G + +VDTP + V +L +KR L +V
Sbjct: 473 VTKTSQSGRRTWDGQEVVVVDTPSFNQMLDVEKDPSRLEEEVKRCLSCCEKGDTFFVLVF 532
Query: 130 DVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165
+ R DK + FG K A+++ T +
Sbjct: 533 QLGRFTEEDKTAVAKLEAIFGADFTKYAIMLFTRKE 568
>sp|Q8K349|GIMA6_MOUSE GTPase IMAP family member 6 OS=Mus musculus GN=Gimap6 PE=2 SV=1
Length = 305
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 13/132 (9%)
Query: 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMV-----SRSRAGFTLNIVD 93
L +L++GK G GKS+T NSI+G +A F+S+ RPV +R G L ++D
Sbjct: 104 LQLLLVGKTGSGKSATGNSILGRQA-----FESKISARPVTTTFQKGTREFEGKELEVID 158
Query: 94 TPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQI 153
TP + + I L + +L V ++ Y + D+ + R + + FG I
Sbjct: 159 TPDIFSPQNQPEATAKKICDLLASPGPHAVLLVIQVGRYTAE--DQAVARCLQEIFGNTI 216
Query: 154 WKRALIVLTHAQ 165
++V T +
Sbjct: 217 LAYTILVFTRKE 228
>sp|Q5FVN6|GIMA6_RAT GTPase IMAP family member 6 OS=Rattus norvegicus GN=Gimap6 PE=2
SV=1
Length = 304
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 69/147 (46%), Gaps = 15/147 (10%)
Query: 27 ELLGKLKQENVNT--LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMV--- 80
EL LK++ + L +L++GK G GKS+T NSI+G + F+S+ RPV +
Sbjct: 88 ELTKDLKEKKLTPKRLQLLLVGKTGSGKSATGNSILGRQ-----VFESKISARPVTMAFQ 142
Query: 81 --SRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLD 138
SR G L ++DTP ++ + I L + +L V + V R D
Sbjct: 143 KGSRELEGKELEVIDTPDILSPQNQPEATAKKICDILASPGPHAVLLV--IQVGRYTTED 200
Query: 139 KQITRAITDNFGEQIWKRALIVLTHAQ 165
++ R + + FG I ++V T +
Sbjct: 201 QEAARCLQEIFGNGILAYTILVFTRKE 227
>sp|Q4KLG2|GIMA8_RAT GTPase IMAP family member 8 OS=Rattus norvegicus GN=Gimap8 PE=2
SV=1
Length = 688
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 76/146 (52%), Gaps = 16/146 (10%)
Query: 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-FTLN-----IVD 93
L I+++G+ GVGKS+T N+I+G A VS +++ PV SRS++G TL+ +VD
Sbjct: 475 LNIILLGRSGVGKSATGNTILGRPAF-VSQLRAQ---PV-TSRSQSGRRTLDWQDIVVVD 529
Query: 94 TPGLIEGGYVNYHAIQL---IKRFLLNKTIDVL-LYVDRLDVYRVDNLDKQITRAITDNF 149
TP L + + QL IK+ LL + + ++V + R D+ + + +F
Sbjct: 530 TPSLNQMSGTEKNPAQLKKEIKQCLLQNCEEGMKVFVLVFQLGRFTQEDEAVVEQLEASF 589
Query: 150 GEQIWKRALIVLTHAQ-LSLPDRLDY 174
E I K +++ T + L D D+
Sbjct: 590 EENIMKYMIVLFTRKEDLGDGDLYDF 615
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 6/133 (4%)
Query: 33 KQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSE--GPRPVMVSRSRAGFTLN 90
+ + +TL +L++GK G GKS+T N+I+G KAV S F R S S G +
Sbjct: 42 QSQGTSTLRLLLLGKQGAGKSATGNTILG-KAVFESRFSHHMVTKRCQSESVSVRGKQVI 100
Query: 91 IVDTPGLIEG-GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNF 149
++DTP L G L + L VLL V + DK+ I F
Sbjct: 101 VIDTPDLFSSLGCPEVQQQNLRQCLDLLADPYVLLLV--TPIGHSTEEDKKTIEGIQGVF 158
Query: 150 GEQIWKRALIVLT 162
G Q ++ ++V T
Sbjct: 159 GPQAYRHMIVVFT 171
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR 84
L +L+MGK GVGKS+ NSI+G++ + + S SR
Sbjct: 284 LRVLLMGKRGVGKSAAGNSILGKQVFKTQFSEKQRVTEAFASHSR 328
>sp|A9B567|DER_HERA2 GTPase Der OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM
785) GN=der PE=3 SV=1
Length = 455
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 30 GKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTL 89
G+ ++E+ N+L I ++G+ VGKSS +N ++GE+ V VS + + G +
Sbjct: 173 GQEEEEDDNSLKIAIVGRPNVGKSSLLNKLVGEERVVVSNIPGTTRDSIDTKLTYKGIPI 232
Query: 90 NIVDTPGL-----IEGGYVNYHAIQLIK 112
++DT G+ IE G Y ++ +K
Sbjct: 233 TLIDTAGIRRRGSIEQGIERYSVLRTMK 260
>sp|Q75N62|GIMA8_MOUSE GTPase IMAP family member 8 OS=Mus musculus GN=Gimap8 PE=2 SV=1
Length = 688
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 17/167 (10%)
Query: 12 MGIQQFPPATQTKLLELLGKLKQ-ENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTF 70
+G + P A+Q + G KQ + +TL +L++GK G GKS+T N+I+G KAV S F
Sbjct: 24 VGQGERPSASQGQE----GNFKQNQGTSTLRLLLLGKQGAGKSATGNTILG-KAVFESKF 78
Query: 71 QSE--GPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF--LLNKTIDVLLYV 126
R S S G + ++DTP L + Q +K+ LL VLL V
Sbjct: 79 SDHMVTDRCQSESVSVRGKQVIVIDTPDLFSSLSCSEVRQQNLKQCLELLADDHCVLLLV 138
Query: 127 DRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 173
+ Y + D++ I G + ++ ++V T D LD
Sbjct: 139 TPIGHYTEE--DRETIEGIWGKIGPKAYRHMIVVFTR-----EDELD 178
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 64/151 (42%), Gaps = 27/151 (17%)
Query: 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLN-----IVDT 94
L I+++G+ G GKS+T N+I+G A F +PV S TL+ +VDT
Sbjct: 476 LNIILLGRSGAGKSATGNTILGRSAF----FSQLRAQPVTSSSQSGKRTLDWQDVVVVDT 531
Query: 95 PGLIEGGYVN----------YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRA 144
P I+ +H + L + + ++V L + R D+ +
Sbjct: 532 PSFIQTPGTEKDPSRLKEEIHHCLSLCEEGM-------KIFVLVLQLGRFTQEDEVVVEQ 584
Query: 145 ITDNFGEQIWKRALIVLTHAQ-LSLPDRLDY 174
+ +F E I K +++ T + L D DY
Sbjct: 585 LEASFEENIMKYMIVLFTRKEDLGDGDLHDY 615
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 17/132 (12%)
Query: 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGL 97
L +L+MGK GVGKS+ NSI+G++ + + S SR G + I+D+P +
Sbjct: 285 LRVLLMGKRGVGKSAAGNSILGKQVFKTQFSEKQRVTKAFASHSRVWQGKKVLIIDSPEI 344
Query: 98 ----IEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQI 153
++ V H FLL + L D DV+ + I FGE+
Sbjct: 345 SSWKLDESAVKNHTFPGPHAFLLVTPLGSSLKSDD-DVFSI----------IKRIFGEKF 393
Query: 154 WKRALIVLTHAQ 165
K +++ T +
Sbjct: 394 TKFTIVLFTRKE 405
>sp|B9KFN5|DER_CAMLR GTPase Der OS=Campylobacter lari (strain RM2100 / D67 / ATCC
BAA-1060) GN=der PE=3 SV=1
Length = 461
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 31 KLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLN 90
KLK N N + + ++G+ VGKSS +N+++ E+ VS PV S +
Sbjct: 188 KLKTINENHIKVGIIGRVNVGKSSLLNALVKEERSVVSDIAGTTIDPVNESIMHKDKIIE 247
Query: 91 IVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119
VDT G+ + G IQ ++R+ LN+T
Sbjct: 248 FVDTAGIRKRG-----KIQGLERYALNRT 271
>sp|B0TFW3|DER_HELMI GTPase Der OS=Heliobacterium modesticaldum (strain ATCC 51547 /
Ice1) GN=der PE=3 SV=1
Length = 442
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 33 KQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIV 92
+ ++ +T+ I V+G+ VGKSS VN+I+G++ V VS + + R G ++
Sbjct: 171 EDDDPDTIKIAVIGRPNVGKSSLVNAILGQERVIVSDIPGTTRDAIDTAFDRDGKRYILI 230
Query: 93 DTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDV 131
DT G+ G + + ++R+ + ++ L +DR DV
Sbjct: 231 DTAGMRRKGRIE----EAVERYSVMRS---LRAIDRSDV 262
>sp|Q30TK8|DER_SULDN GTPase Der OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM
1251) GN=der PE=3 SV=1
Length = 494
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 29 LGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFT 88
+ + + + N + I ++G+ VGKSS +N+++GE+ VS+ P+ S
Sbjct: 224 IKEFDETDANHIKISIIGRTNVGKSSLLNALLGEERSVVSSVAGTTIDPIDESMEYKDKQ 283
Query: 89 LNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL 123
L VDT GL G I I++F L +T ++L
Sbjct: 284 LTFVDTAGLRRRG-----KIVGIEKFALMRTKEML 313
>sp|B0K8N3|DER_THEP3 GTPase Der OS=Thermoanaerobacter pseudethanolicus (strain ATCC
33223 / 39E) GN=der PE=3 SV=1
Length = 439
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 25 LLELLGKLKQENVN----TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMV 80
L E++ KL QE + T+ I V+GK VGKSS VN I+GE+ V VS +
Sbjct: 158 LDEVVKKLPQEELEYTEETIKIAVIGKPNVGKSSLVNKILGEERVIVSNIPGTTRDAIDT 217
Query: 81 SRSRAGFTLNIVDTPGL 97
S+ G ++DT G+
Sbjct: 218 PFSKDGKNYVLIDTAGI 234
>sp|B8F4X7|DER_HAEPS GTPase Der OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=der
PE=3 SV=1
Length = 504
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 10 EWMGIQQFPPATQTKLLELLGKLKQENVN--TLTILVMGKGGVGKSSTVNSIIGEKAVTV 67
EW F T LL+ + QE + + I ++G+ VGKS+ N I+GE+ V V
Sbjct: 184 EWDSDFDFDNEEDTALLDEALEEDQEETDDKNIKIAIVGRPNVGKSTLTNRILGEERVVV 243
Query: 68 STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID------ 121
+ + R G I+DT G+ + G V+ +++F + KT+
Sbjct: 244 YDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKRGKVHL----AVEKFSVIKTLQAIQDAN 299
Query: 122 -VLLYVDRLD 130
VLL +D D
Sbjct: 300 VVLLTIDARD 309
>sp|B8CWY9|DER_HALOH GTPase Der OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM
9562) GN=der PE=3 SV=1
Length = 438
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97
+ + + ++GK VGKSS VN I+G++ V VS + + G N++DT GL
Sbjct: 176 DAIDVAIIGKPNVGKSSLVNYIVGQERVIVSDIPGTTRDAIDTLVEKNGHRYNLIDTAGL 235
Query: 98 IEGGYVN-----YHAIQLIKRFLLNKTIDVLLYVDRLD 130
+ V Y A++ IK ++++ V++ +D L+
Sbjct: 236 RKKSRVKEATEYYSALRTIK--AIDRSDGVIMMIDALE 271
>sp|Q74JL6|DER_LACJO GTPase Der OS=Lactobacillus johnsonii (strain CNCM I-12250 / La1 /
NCC 533) GN=der PE=3 SV=1
Length = 435
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%)
Query: 27 ELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG 86
E K Q ++ V+G+ VGKSS VN+I+GE+ V VS + + + + G
Sbjct: 162 EFGDKANQHEDGSIRFSVIGRPNVGKSSLVNAILGEQRVIVSNIEGTTRDAIDTTFTNDG 221
Query: 87 FTLNIVDTPGLIEGGYV 103
IVDT G+ G V
Sbjct: 222 QKYTIVDTAGIRRRGKV 238
>sp|Q119L7|DER_TRIEI GTPase Der OS=Trichodesmium erythraeum (strain IMS101) GN=der PE=3
SV=1
Length = 453
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97
N I ++G+ VGKSS +NS IGEK VS + R G T ++DT G+
Sbjct: 175 NQTKIAIVGRPNVGKSSLLNSFIGEKRAIVSPISGTTRDAIDTVVERNGKTYRLIDTAGI 234
Query: 98 IEGGYVNYHA--IQLIKRFLLNKTIDVLLYV-DRLD 130
+ V Y A + + F + +V+++V D LD
Sbjct: 235 RKKKNVEYGAEFFGINRAFKAIRRAEVVMFVIDALD 270
>sp|A5N6N6|ERA_CLOK5 GTPase Era OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 /
NCIMB 10680) GN=era PE=3 SV=1
Length = 293
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97
I ++G+ VGKS+ +NSI+GEK VS + +R F L VDTPG+
Sbjct: 7 ITIIGRPNVGKSTLLNSIMGEKLSIVSCKPQTTRNSIQTILTRDDFQLIFVDTPGI 62
>sp|B9E055|ERA_CLOK1 GTPase Era OS=Clostridium kluyveri (strain NBRC 12016) GN=era
PE=3 SV=1
Length = 293
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97
I ++G+ VGKS+ +NSI+GEK VS + +R F L VDTPG+
Sbjct: 7 ITIIGRPNVGKSTLLNSIMGEKLSIVSCKPQTTRNSIQTILTRDDFQLIFVDTPGI 62
>sp|B0K3E4|DER_THEPX GTPase Der OS=Thermoanaerobacter sp. (strain X514) GN=der PE=3 SV=1
Length = 439
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 25 LLELLGKLKQENVN----TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMV 80
L E++ +L QE + T+ I V+GK VGKSS VN I+GE+ V VS +
Sbjct: 158 LDEVVKRLPQEELEYTEETIKIAVIGKPNVGKSSLVNKILGEERVIVSNIPGTTRDAIDT 217
Query: 81 SRSRAGFTLNIVDTPGL 97
S+ G ++DT G+
Sbjct: 218 PFSKDGKNYVLIDTAGI 234
>sp|C7LZP1|ERA_ACIFD GTPase Era OS=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM
15462 / NBRC 103882 / ICP) GN=era PE=3 SV=1
Length = 287
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%)
Query: 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97
+ V+G+ VGKSS VN++ GE+A VS + R V V L +VDTPG+
Sbjct: 15 VAVIGRTNVGKSSLVNALAGERATIVSRHPNTTRRSVRVISRVGDAELVLVDTPGI 70
>sp|Q7NS92|DER_CHRVO GTPase Der OS=Chromobacterium violaceum (strain ATCC 12472 / DSM
30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757)
GN=der PE=3 SV=1
Length = 469
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 9/105 (8%)
Query: 24 KLLELL-----GKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPV 78
+L+EL+ ++++E+ V+G+ VGKS+ VN+I+GE+ V +
Sbjct: 154 ELMELVLEGFPDEVEEEDSRHPKFAVIGRPNVGKSTLVNAILGEERVIAFDQAGTTRDSI 213
Query: 79 MVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL 123
+ R G T I+DT G+ VN +++++F + KT+ +
Sbjct: 214 YIDFEREGHTYTIIDTAGVRRRAKVN----EMLEKFSVIKTMKAI 254
>sp|Q24VA2|DER_DESHY GTPase Der OS=Desulfitobacterium hafniense (strain Y51) GN=der PE=3
SV=1
Length = 441
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97
+T+ I V+G+ VGKSS VN+++GE+ V VS + + G I+DT G+
Sbjct: 175 DTIRIAVVGRPNVGKSSLVNTLLGEERVIVSNIPGTTRDAIDSAFEHEGKHYIIIDTAGM 234
Query: 98 IEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDV 131
G + +L +++ ++++ L VDR DV
Sbjct: 235 RRKGRIE----ELTEQYSVSRS---LRAVDRSDV 261
>sp|Q8NHV1|GIMA7_HUMAN GTPase IMAP family member 7 OS=Homo sapiens GN=GIMAP7 PE=2 SV=1
Length = 300
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVS-TFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97
+L I+++GK G GKS+T N+I+GE+ Q+ SR G L +VDTPGL
Sbjct: 8 SLRIVLVGKTGSGKSATANTILGEEIFDSRIAAQAVTKNCQKASREWQGRDLLVVDTPGL 67
Query: 98 IE 99
+
Sbjct: 68 FD 69
>sp|B8G2P9|DER_DESHD GTPase Der OS=Desulfitobacterium hafniense (strain DCB-2 / DSM
10664) GN=der PE=3 SV=1
Length = 441
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97
+T+ I V+G+ VGKSS VN+++GE+ V VS + + G I+DT G+
Sbjct: 175 DTIRIAVVGRPNVGKSSLVNTLLGEERVIVSNIPGTTRDAIDSAFEHEGKHYIIIDTAGM 234
Query: 98 IEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDV 131
G + +L +++ ++++ L VDR DV
Sbjct: 235 RRKGRIE----ELTEQYSVSRS---LRAVDRSDV 261
>sp|Q8EUV6|MNME_MYCPE tRNA modification GTPase MnmE OS=Mycoplasma penetrans (strain HF-2)
GN=mnmE PE=3 SV=1
Length = 444
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97
N L ++++GK VGKSS +NS+I + VS + V S + G LN +DT G+
Sbjct: 214 NGLNVVIVGKPNVGKSSLLNSLIKKNKAIVSDIKGTTRDLVTESINLEGLLLNFIDTAGI 273
Query: 98 IEG 100
E
Sbjct: 274 RES 276
>sp|Q8YZH7|DER_NOSS1 GTPase Der OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=der PE=3
SV=1
Length = 453
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 14/120 (11%)
Query: 14 IQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSE 73
I+ PP T+ +EN N + I ++G+ VGKSS +N+ GE+ V VS
Sbjct: 162 IKHLPPVTEL----------EEN-NEIKIAIIGRPNVGKSSLLNAFAGEERVIVSPISGT 210
Query: 74 GPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA--IQLIKRFLLNKTID-VLLYVDRLD 130
+ R G ++DT G+ + ++Y + + F + D VLL +D LD
Sbjct: 211 TRDAIDTFIERDGQNYRLIDTAGIRKKKSIDYGTEFFSINRAFKAIRRADVVLLVIDALD 270
>sp|Q5BJT6|LSG1_RAT Large subunit GTPase 1 homolog OS=Rattus norvegicus GN=Lsg1 PE=2
SV=1
Length = 655
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 20/97 (20%)
Query: 21 TQTKLLELLGKL---KQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVST-------F 70
++ +LLEL KL K+ LT+ ++G VGKSST+N+I+G K V+VS F
Sbjct: 362 SKQELLELFKKLHTGKKVKDGQLTVGLVGYPNVGKSSTINTIMGNKKVSVSATPGHTKHF 421
Query: 71 QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA 107
Q+ P L + D PGL+ +V+ A
Sbjct: 422 QTLYVEP----------GLCLCDCPGLVMPSFVSTKA 448
>sp|Q3M929|DER_ANAVT GTPase Der OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937)
GN=der PE=3 SV=1
Length = 453
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 14/120 (11%)
Query: 14 IQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSE 73
I+ PP T+ E N + I ++G+ VGKSS +N+ GE+ V VS
Sbjct: 162 IKHLPPTTEL-----------EENNEIKIAIIGRPNVGKSSLLNAFAGEERVIVSPISGT 210
Query: 74 GPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA--IQLIKRFLLNKTID-VLLYVDRLD 130
+ R G ++DT G+ + ++Y + + F + D VLL +D LD
Sbjct: 211 TRDAIDTFIERNGQNYRLIDTAGIRKKKSIDYGTEFFSINRAFKAIRRADVVLLVIDALD 270
>sp|A4J3P1|DER_DESRM GTPase Der OS=Desulfotomaculum reducens (strain MI-1) GN=der PE=3
SV=1
Length = 439
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%)
Query: 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97
+T+ I V+G+ VGKSS VN+I+GE+ V VS + S + G +VDT G+
Sbjct: 173 DTIRIAVIGRPNVGKSSLVNTILGEERVIVSNIPGTTRDAIDSSFEKNGKNYVLVDTAGM 232
>sp|B1XLH8|DER_SYNP2 GTPase Der OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 /
PR-6) GN=der PE=3 SV=1
Length = 453
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 24 KLLELLGKLKQ-ENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSR 82
K++E L + E T+ + ++G+ VGKSS +N++ GE+ VS +
Sbjct: 160 KVIEYLPTITDVEEDTTINVAIIGRPNVGKSSLLNALTGEQRAIVSPISGTTRDAIDTII 219
Query: 83 SRAGFTLNIVDTPGLIEGGYVNYHA--IQLIKRFLLNKTIDVLLYV-DRLD 130
R G ++DT G+ V+Y A + + F + DV+L+V D LD
Sbjct: 220 ERNGQQYRLIDTAGIRRKKNVDYGAEFFSINRAFKAIRRADVVLFVIDVLD 270
>sp|Q3UM18|LSG1_MOUSE Large subunit GTPase 1 homolog OS=Mus musculus GN=Lsg1 PE=2 SV=2
Length = 644
Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 20/97 (20%)
Query: 21 TQTKLLELLGKL---KQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVST-------F 70
++ +LLEL KL K+ LT+ ++G VGKSST+N+I+G K V+VS F
Sbjct: 351 SKQELLELFKKLHTGKKVKDGQLTVGLVGYPNVGKSSTINTIMGNKKVSVSATPGHTKHF 410
Query: 71 QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA 107
Q+ P L + D PGL+ +V+ A
Sbjct: 411 QTLYVEP----------GLCLCDCPGLVMPSFVSTKA 437
>sp|Q7VM29|DER_HAEDU GTPase Der OS=Haemophilus ducreyi (strain 35000HP / ATCC 700724)
GN=der PE=3 SV=1
Length = 510
Score = 40.4 bits (93), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 7/117 (5%)
Query: 10 EWMGIQQFPPATQTKLL-ELLGKLKQENV--NTLTILVMGKGGVGKSSTVNSIIGEKAVT 66
EW F T LL E L + E++ + I ++G+ VGKS+ N I+GE+ V
Sbjct: 187 EWNQDFDFNNEEDTALLDEALDEENSESIADKNIKIAIIGRPNVGKSTLTNRILGEERVV 246
Query: 67 VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL 123
V + + R G I+DT G+ + G +N +++F + KT+ +
Sbjct: 247 VYDMPGTTRDSIYIPMERDGQEYTIIDTAGVRKRGKINL----AVEKFSVIKTLQAI 299
>sp|P74120|DER_SYNY3 GTPase Der OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=der
PE=3 SV=1
Length = 452
Score = 40.0 bits (92), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 25 LLELLGKLKQE-NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS 83
LLE L ++E + + + ++G+ VGKSS +N++ GE+ VS + +
Sbjct: 161 LLEYLPAPQEEPEEDEIKVAIVGRPNVGKSSLLNALTGEQRAIVSPISGTTRDAIDMVVE 220
Query: 84 RAGFTLNIVDTPGLIEGGYVNYHA--IQLIKRFLLNKTIDVLLYVDRLDV 131
R G ++DT G+ V+Y A + + F + DV+L+V LDV
Sbjct: 221 RNGQKYRLIDTAGIRRKKNVDYGAEFFGINRAFKAIRRADVVLFV--LDV 268
>sp|Q8K3L6|GIMA5_RAT GTPase IMAP family member 5 OS=Rattus norvegicus GN=Gimap5 PE=2
SV=1
Length = 326
Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 82/195 (42%), Gaps = 39/195 (20%)
Query: 35 ENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA------GFT 88
E+ L IL++GK G GKS+T NSI+ A F+S + S+A G +
Sbjct: 40 EDSGLLRILLVGKSGCGKSATGNSILRRPA-----FESRLRGQSVTRTSQAEMGTWEGRS 94
Query: 89 LNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT--IDVLLYVDRLDVYRVDNLDKQITRAIT 146
+VDTP + E N + I L VLL V +L Y V+ D R +
Sbjct: 95 FLVVDTPPIFESKIQNQDMDKDIGNCYLMCAPGPHVLLLVTQLGRYTVE--DAMAVRMVK 152
Query: 147 DNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVP 206
FG + + +++ TH + L D E+L +FV+ + G+
Sbjct: 153 QIFGVGVMRYMIVLFTHKE-DLAD------------ESLEEFVTHT---------GNLDL 190
Query: 207 VVLVENSGR--CAKN 219
LV+ GR CA N
Sbjct: 191 HRLVQECGRRYCAFN 205
>sp|Q1GXL7|MNME_METFK tRNA modification GTPase MnmE OS=Methylobacillus flagellatus
(strain KT / ATCC 51484 / DSM 6875) GN=mnmE PE=3 SV=1
Length = 446
Score = 39.7 bits (91), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIE 99
L ++++G+ VGKSS +N + GE+ V+ + S G TL+I DT GL E
Sbjct: 216 LQVVLVGQPNVGKSSLMNQLAGEEVAIVTPIAGTTRDTIKNSIQINGITLHITDTAGLRE 275
Query: 100 -GGYVNYHAIQLIKRFLLNKTIDVLL 124
V H I R L N + +LL
Sbjct: 276 TNDEVEQHGIARTWRALENAGVALLL 301
>sp|Q7VDI8|DER_PROMA GTPase Der OS=Prochlorococcus marinus (strain SARG / CCMP1375 /
SS120) GN=der PE=3 SV=1
Length = 456
Score = 39.7 bits (91), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 10/115 (8%)
Query: 1 MSMASQVIREWMG----IQQFPPATQTKLLELL------GKLKQENVNTLTILVMGKGGV 50
+SMA + R +G + A +LL+ L +L ++ + + ++G+ V
Sbjct: 129 LSMAGEFWRLGLGEPYPVSAIHGAGTGELLDRLISILPPKELIKDEEEPIQVAIVGRPNV 188
Query: 51 GKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY 105
GKSS +N+I GEK VS + + S R G ++DT G+ VNY
Sbjct: 189 GKSSLLNAICGEKRAIVSAIRGTTRDTIDTSIVREGKLWKLIDTAGIRRRKSVNY 243
>sp|A0M5P1|DER_GRAFK GTPase Der OS=Gramella forsetii (strain KT0803) GN=der PE=3 SV=1
Length = 434
Score = 39.3 bits (90), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 44 VMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97
V+G+ GKSS +N++IGE V+ + +R GF N+VDT G+
Sbjct: 179 VVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDSIDTRYNRFGFEFNLVDTAGI 232
>sp|A4IQA2|DER_GEOTN GTPase Der OS=Geobacillus thermodenitrificans (strain NG80-2)
GN=der PE=3 SV=1
Length = 436
Score = 39.3 bits (90), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 30 GKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTL 89
G+ +E+V + ++G+ VGKSS VN+I+GE+ V VS V S R G
Sbjct: 168 GQEYEEDV--IKFCLIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAVDTSFVREGQKY 225
Query: 90 NIVDTPGLIEGGYV 103
I+DT G+ + G +
Sbjct: 226 VIIDTAGMRKRGKI 239
>sp|B0U489|DER_XYLFM GTPase Der OS=Xylella fastidiosa (strain M12) GN=der PE=3 SV=1
Length = 465
Score = 38.9 bits (89), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 29 LGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFT 88
+G+ E+ + I +G+ VGKS+ VN ++GE+ + VS + V R F
Sbjct: 168 IGEALNEDSERIHIAFVGRPNVGKSTLVNRLLGEERMIVSDVPGTTRDSITVDLERDEFR 227
Query: 89 LNIVDTPGL 97
+VDT GL
Sbjct: 228 YRLVDTAGL 236
>sp|A6LEP5|DER_PARD8 GTPase Der OS=Parabacteroides distasonis (strain ATCC 8503 / DSM
20701 / NCTC 11152) GN=der PE=3 SV=1
Length = 437
Score = 38.9 bits (89), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 15/127 (11%)
Query: 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG 101
I ++G+ GKSS +N+ IGE V+ + ++ G +VDT G+ + G
Sbjct: 178 IAIIGRPNAGKSSLINAFIGEDRHIVTDIAGTTRDSIYTKYNKFGLNFYLVDTAGIRKKG 237
Query: 102 YVN----YHAIQLIKRFLLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKR 156
VN Y+++ R + N + VL+ LD R +++ D I + N K+
Sbjct: 238 KVNEDLEYYSVIRSIRTIENSDVCVLM----LDATRGIESQDMNIFSLVQKN------KK 287
Query: 157 ALIVLTH 163
L+V +
Sbjct: 288 GLVVCVN 294
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,491,403
Number of Sequences: 539616
Number of extensions: 4702827
Number of successful extensions: 17105
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 537
Number of HSP's that attempted gapping in prelim test: 16369
Number of HSP's gapped (non-prelim): 1236
length of query: 309
length of database: 191,569,459
effective HSP length: 117
effective length of query: 192
effective length of database: 128,434,387
effective search space: 24659402304
effective search space used: 24659402304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)