Query 021686
Match_columns 309
No_of_seqs 221 out of 1333
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 04:53:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021686.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021686hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2918 Carboxymethyl transfer 100.0 7.1E-45 1.5E-49 336.8 9.9 226 31-296 19-266 (335)
2 COG3315 O-Methyltransferase in 100.0 1.4E-38 3.1E-43 299.7 15.8 234 34-284 6-263 (297)
3 TIGR00027 mthyl_TIGR00027 meth 100.0 2E-38 4.4E-43 293.8 16.0 223 43-283 1-248 (260)
4 PF04072 LCM: Leucine carboxyl 100.0 6.9E-37 1.5E-41 269.4 7.7 161 46-223 1-175 (183)
5 PF04672 Methyltransf_19: S-ad 96.6 0.0071 1.5E-07 56.6 7.5 104 103-221 55-165 (267)
6 PF12147 Methyltransf_20: Puta 73.6 49 0.0011 31.8 11.0 168 96-282 111-295 (311)
7 TIGR00740 methyltransferase, p 73.0 22 0.00048 32.0 8.5 60 120-190 55-118 (239)
8 PHA03412 putative methyltransf 69.4 5.2 0.00011 37.1 3.5 41 108-152 186-229 (241)
9 PF00891 Methyltransf_2: O-met 68.9 11 0.00024 33.9 5.6 54 118-189 100-154 (241)
10 PRK11036 putative S-adenosyl-L 66.4 21 0.00046 32.5 7.0 101 99-219 25-126 (255)
11 TIGR02716 C20_methyl_CrtF C-20 60.8 27 0.00059 32.7 6.7 61 119-190 150-211 (306)
12 PHA03411 putative methyltransf 60.2 9.8 0.00021 36.0 3.5 40 109-152 199-241 (279)
13 KOG4300 Predicted methyltransf 59.8 72 0.0016 29.3 8.8 142 110-280 70-227 (252)
14 PF13847 Methyltransf_31: Meth 57.3 44 0.00096 27.6 6.8 81 119-219 4-87 (152)
15 PF05185 PRMT5: PRMT5 arginine 51.6 1.1E+02 0.0023 31.0 9.5 101 99-220 161-273 (448)
16 PRK15068 tRNA mo(5)U34 methylt 46.4 1.1E+02 0.0024 29.2 8.4 72 106-189 112-183 (322)
17 KOG1500 Protein arginine N-met 44.6 74 0.0016 31.4 6.7 94 97-213 158-251 (517)
18 PRK15451 tRNA cmo(5)U34 methyl 42.1 1.1E+02 0.0024 27.7 7.4 59 120-189 58-120 (247)
19 PLN02366 spermidine synthase 41.2 1E+02 0.0022 29.4 7.3 44 118-162 91-137 (308)
20 PF03848 TehB: Tellurite resis 41.2 1.3E+02 0.0029 26.7 7.5 80 119-221 31-110 (192)
21 PF12847 Methyltransf_18: Meth 40.6 69 0.0015 24.4 5.1 57 120-187 3-61 (112)
22 PF00398 RrnaAD: Ribosomal RNA 37.5 1.6E+02 0.0034 27.1 7.7 90 98-211 13-103 (262)
23 TIGR03438 probable methyltrans 36.2 3E+02 0.0065 25.8 9.5 101 103-221 49-153 (301)
24 COG3580 Uncharacterized protei 34.3 26 0.00055 33.8 1.9 42 108-149 264-312 (351)
25 PF05175 MTS: Methyltransferas 30.0 3.2E+02 0.0069 23.1 8.0 70 105-189 20-92 (170)
26 PLN03075 nicotianamine synthas 28.6 3.8E+02 0.0082 25.6 8.8 82 118-219 123-208 (296)
27 smart00650 rADc Ribosomal RNA 27.7 1.5E+02 0.0032 25.0 5.4 57 119-190 14-71 (169)
28 PF07091 FmrO: Ribosomal RNA m 25.3 61 0.0013 30.3 2.7 66 97-163 85-152 (251)
29 TIGR00537 hemK_rel_arch HemK-r 23.6 3E+02 0.0065 23.3 6.6 56 120-189 21-77 (179)
30 PTZ00098 phosphoethanolamine N 23.2 2.9E+02 0.0063 25.3 6.9 56 120-189 54-110 (263)
31 TIGR02752 MenG_heptapren 2-hep 22.0 3.2E+02 0.007 23.9 6.7 58 120-189 47-107 (231)
32 PLN02244 tocopherol O-methyltr 21.7 2.6E+02 0.0056 26.8 6.4 60 120-190 120-180 (340)
33 TIGR00091 tRNA (guanine-N(7)-) 20.7 1.9E+02 0.0041 25.1 4.8 59 119-189 17-77 (194)
34 TIGR00452 methyltransferase, p 20.1 3.6E+02 0.0078 25.8 6.9 150 120-296 123-287 (314)
No 1
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-45 Score=336.82 Aligned_cols=226 Identities=20% Similarity=0.276 Sum_probs=192.7
Q ss_pred cccccccCcchHHHHHHHHHHHhhhhcCCCCCHhHHhhhcchhhhhhhhhhhhhhhcccccccchhhhhhHHHHHHHHHH
Q 021686 31 LHATIDAQWDYLQRTACQTAAGRAMWKHVIHDPLADLLAGETYLRNVHEKIKKDRLNNAREISGVILAIRTLWFDSQIEA 110 (309)
Q Consensus 31 ~~~~v~~t~d~v~~Ta~~~a~~RA~e~~~~~Dp~A~~fv~~~~~~~~~~~~~~~~~in~~~~~~~~~~~Rt~~iD~~v~~ 110 (309)
-+.+||+|||+.+...... ...||+.||++..|+... ..++.|.||+| |++|+..|+..|++
T Consensus 19 ~d~~vq~Tnddss~ck~~~-----~~~gy~~d~~~~~~~~~~-------~~rr~P~inRG------y~~R~~aI~~~v~~ 80 (335)
T KOG2918|consen 19 ADSAVQGTNDDSSLCKRSA-----TKSGYWHDPFIKLFVPSK-------KARRAPEINRG------YWARTMAIRHAVRA 80 (335)
T ss_pred cchhhhhccchhhhhhhHH-----HhcCCccCchhhhhcccc-------ccCCCceecch------hhHHHHHHHHHHHH
Confidence 3568999999988555433 345999999999999742 25678999984 89999999999999
Q ss_pred HHhhcCCCccEEEEeCccCccchhhccC---CCCceEEEecchhhHHHHHHHHHhhhccCC----------CCCCCccCC
Q 021686 111 ALNSFNSREAQVVLLGAGMDTRAYRLNC---LKESDVFEVDFSQVLQVKTALIQTAMEFGD----------EQQHPRMTA 177 (309)
Q Consensus 111 fl~~~~~g~~QVV~LGAGlDTr~~RL~~---~~~~~~fEvD~P~vi~~K~~~l~~~~~~~~----------~~~~~~l~s 177 (309)
||++.. +++||||||||+||++|||.. ...+.|||||||+++++|..++.+.+..++ ...+..+++
T Consensus 81 Fl~~~~-~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s 159 (335)
T KOG2918|consen 81 FLEQTD-GKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHS 159 (335)
T ss_pred HHHhcC-CceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceecc
Confidence 999864 889999999999999999975 368999999999999999966665554321 123567899
Q ss_pred CceEEEeccCCCCcHH-HHHHhcCCCCCCcEEEEecccccccCccc--------cccCCccEEEecCCCCcccCCCCchh
Q 021686 178 KSLTTVAADIRENDWL-EKLQLSGYKPEKNTVWVLEVLLADFMNQP--------STTLSSSIFHFSSDWPDRLLPTLGFS 248 (309)
Q Consensus 178 ~~y~~v~~DL~~~~~~-~~L~~~G~d~~~Ptl~i~Egvl~Y~~~~~--------a~~~~~~~f~~y~~~~e~i~p~d~Fg 248 (309)
.+|+.++|||++.+.+ ++|...|+|++.||+||+||||+|+.++. ++.|++++|+.| ||++|+|+||
T Consensus 160 ~~Y~~~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a~fv~Y----EQi~~~D~Fg 235 (335)
T KOG2918|consen 160 GRYHLIGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFENAHFVNY----EQINPNDRFG 235 (335)
T ss_pred CceeeeccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCcccEEEE----eccCCCChHH
Confidence 9999999999998766 47888999999999999999999776654 467999999999 9999999999
Q ss_pred HHHHhhcCCCCCCCCCCCChhhhhhhhcCCCcccccCCCCCCCceeEE
Q 021686 249 NVRLSQIGDPDAHFGLMNDPLNLFNKLRSLPRSVQTHPDDGTPCRRLY 296 (309)
Q Consensus 249 ~~m~~nl~e~~~~fg~~~~~~~~~l~~~g~~~~~~~~p~~~~~~~R~~ 296 (309)
++|++|++++++ | +.++..|||+++|++||.
T Consensus 236 ~vM~~nlk~r~~-------~----------L~gle~y~s~Esq~~Rf~ 266 (335)
T KOG2918|consen 236 KVMLANLKRRGC-------P----------LHGLETYNSIESQRSRFL 266 (335)
T ss_pred HHHHHHHHhcCC-------C----------CchhhhcccHHHHHHHHH
Confidence 999999998884 3 999999999999999984
No 2
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.4e-38 Score=299.66 Aligned_cols=234 Identities=28% Similarity=0.328 Sum_probs=176.2
Q ss_pred ccccCcchHHHHHHHHHHHhhhhc----CCCCCHhHHhhhcchhhhhhhhhhhhhhhccccc--ccc--hhhhhhHHHHH
Q 021686 34 TIDAQWDYLQRTACQTAAGRAMWK----HVIHDPLADLLAGETYLRNVHEKIKKDRLNNARE--ISG--VILAIRTLWFD 105 (309)
Q Consensus 34 ~v~~t~d~v~~Ta~~~a~~RA~e~----~~~~Dp~A~~fv~~~~~~~~~~~~~~~~~in~~~--~~~--~~~~~Rt~~iD 105 (309)
-.....++|+.|++++|++||+|. +|++||||..|++.....+ ..+.. +....+. ... .++++||++||
T Consensus 6 ~~~~~~~~v~~Tal~~a~~RA~es~~~~~L~~D~~A~~lv~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~a~Rtr~fD 82 (297)
T COG3315 6 DSWDKLSGVGKTALIVAAARALESRKPDPLIDDPFAEELVRQGDDDF--TKLAD-PALALGGGDFLERMNFLAARTRYFD 82 (297)
T ss_pred ccchhhcchhHHHHHHHHHHHHHhcCCCcccCCHHHHHHHhhhHHHH--HHhcC-hhhhcccchhhhhhhhHHHHHHHHH
Confidence 344556789999999999999984 7999999999998654221 11110 1111110 001 26899999999
Q ss_pred HHHHHHHhhcCCCccEEEEeCccCccchhhccCCCCceEEEecchhhHHHHHHHHHhhhccCCCCCCCccCCCceEEEec
Q 021686 106 SQIEAALNSFNSREAQVVLLGAGMDTRAYRLNCLKESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAA 185 (309)
Q Consensus 106 ~~v~~fl~~~~~g~~QVV~LGAGlDTr~~RL~~~~~~~~fEvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~v~~ 185 (309)
+.+++|+.. |.+|||+||||||||+||++++.+++|||||+|+||+.|+++|++.....| .++++|++
T Consensus 83 ~~~~~~~~~---g~~qvViLgaGLDTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~---------~~~~~Va~ 150 (297)
T COG3315 83 DFVRAALDA---GIRQVVILGAGLDTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGATPP---------AHRRLVAV 150 (297)
T ss_pred HHHHHHHHh---cccEEEEeccccccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCCCC---------ceEEEEec
Confidence 999999997 578999999999999999999888999999999999999999999876544 68999999
Q ss_pred cCCCCcHHHHHHhcCCCCCCcEEEEecccccccCcccc-----------ccCCccEEEecCCCCcccC----CCCchh-H
Q 021686 186 DIRENDWLEKLQLSGYKPEKNTVWVLEVLLADFMNQPS-----------TTLSSSIFHFSSDWPDRLL----PTLGFS-N 249 (309)
Q Consensus 186 DL~~~~~~~~L~~~G~d~~~Ptl~i~Egvl~Y~~~~~a-----------~~~~~~~f~~y~~~~e~i~----p~d~Fg-~ 249 (309)
||++.+|.+.|.++|||+++||+||+|||+||+.+++. ..+|.+.++ |........ +..+.. .
T Consensus 151 Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~-~~~~~~~~~~~~~~~~~~~~~ 229 (297)
T COG3315 151 DLREDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFD-YSLPGSLRDRLRRPAARKTMR 229 (297)
T ss_pred cccccchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEe-ccccHHHHhcccchhhhhhcc
Confidence 99999999999999999999999999999998877653 234444444 321111111 111111 1
Q ss_pred HHHhhcCCCCCCCCCCCChhhhhhhhcCCCccccc
Q 021686 250 VRLSQIGDPDAHFGLMNDPLNLFNKLRSLPRSVQT 284 (309)
Q Consensus 250 ~m~~nl~e~~~~fg~~~~~~~~~l~~~g~~~~~~~ 284 (309)
.+....+|+. .|+.....++.+|.++|+......
T Consensus 230 ~~~~~~~e~~-~~~~~~~e~~~~l~~~g~~~~~~~ 263 (297)
T COG3315 230 GEDLDRGELV-YFGDDPAEIETWLAERGWRSTLNR 263 (297)
T ss_pred ccccccccce-eccCCHHHHHHHHHhcCEEEEecC
Confidence 1233457775 677778889999999999888775
No 3
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=100.00 E-value=2e-38 Score=293.83 Aligned_cols=223 Identities=28% Similarity=0.359 Sum_probs=168.5
Q ss_pred HHHHHHHHHHhhhhc----CCCCCHhHHhhhcchhhhhh--hhhhhhhh-hcccc-cccchhhhhhHHHHHHHHHHHHhh
Q 021686 43 QRTACQTAAGRAMWK----HVIHDPLADLLAGETYLRNV--HEKIKKDR-LNNAR-EISGVILAIRTLWFDSQIEAALNS 114 (309)
Q Consensus 43 ~~Ta~~~a~~RA~e~----~~~~Dp~A~~fv~~~~~~~~--~~~~~~~~-~in~~-~~~~~~~~~Rt~~iD~~v~~fl~~ 114 (309)
+.||+++|++||+|. ++|+||||..|+++.+++.. ...+.... ..+.. ..+..++++||++||+.+++|+++
T Consensus 1 ~~Tal~~a~~RA~es~r~~~l~~Dp~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rtr~~D~~i~~~~~~ 80 (260)
T TIGR00027 1 GRTALGVAAARAIETQRPDRLFRDPYAAAFLGAAGRAAMPLDGLLRADAGAYDGLLGGFADFIAVRTRFFDDFLLAAVAA 80 (260)
T ss_pred ChHHHHHHHHHHHHhCCCCcCcCChHHHHHhchhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 479999999999984 79999999999998765310 00010000 00000 012346899999999999999985
Q ss_pred cCCCccEEEEeCccCccchhhccCCCCceEEEecchhhHHHHHHHHHhhhccCCCCCCCccCCCceEEEeccCCCCcHHH
Q 021686 115 FNSREAQVVLLGAGMDTRAYRLNCLKESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLE 194 (309)
Q Consensus 115 ~~~g~~QVV~LGAGlDTr~~RL~~~~~~~~fEvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~v~~DL~~~~~~~ 194 (309)
|..|||+||||||||+|||.++.+++|||||+|+|++.|+++|+++.... +++|++|++||+ .+|.+
T Consensus 81 ---g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~---------~~~~~~v~~Dl~-~~w~~ 147 (260)
T TIGR00027 81 ---GIRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEP---------PAHRRAVPVDLR-QDWPA 147 (260)
T ss_pred ---CCcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCC---------CCceEEeccCch-hhHHH
Confidence 46799999999999999999876899999999999999999999875322 378999999999 79999
Q ss_pred HHHhcCCCCCCcEEEEecccccccCcccc--------c---cCCccEEEecCCCCcccCCC--CchhHHHHh----hcCC
Q 021686 195 KLQLSGYKPEKNTVWVLEVLLADFMNQPS--------T---TLSSSIFHFSSDWPDRLLPT--LGFSNVRLS----QIGD 257 (309)
Q Consensus 195 ~L~~~G~d~~~Ptl~i~Egvl~Y~~~~~a--------~---~~~~~~f~~y~~~~e~i~p~--d~Fg~~m~~----nl~e 257 (309)
.|..+|||+++||+||+|||+||+.+... . .++.++|++. ..+... ..+.+.|.+ ..++
T Consensus 148 ~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (260)
T TIGR00027 148 ALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYV----RPLDGEWRAGMRAPVYHAARGVDGS 223 (260)
T ss_pred HHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEec----cccchhHHHHHHHHHHHhhhccccc
Confidence 99999999999999999999998776542 2 3345556655 222111 113333332 3456
Q ss_pred CCCCCCCCCChhhhhhhhcCCCcccc
Q 021686 258 PDAHFGLMNDPLNLFNKLRSLPRSVQ 283 (309)
Q Consensus 258 ~~~~fg~~~~~~~~~l~~~g~~~~~~ 283 (309)
+. .|+..++.+..+|.++||....+
T Consensus 224 ~~-~~~~~~~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 224 GL-VFGIDRADVAEWLAERGWRASEH 248 (260)
T ss_pred cc-ccCCChhhHHHHHHHCCCeeecC
Confidence 65 78888899999999999998877
No 4
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=100.00 E-value=6.9e-37 Score=269.37 Aligned_cols=161 Identities=30% Similarity=0.400 Sum_probs=128.0
Q ss_pred HHHHHHHhhhhc----CCCCCHhHHhhhcchhhh------hhh---hhhhhhhhcccccccchhhhhhHHHHHHHHHHHH
Q 021686 46 ACQTAAGRAMWK----HVIHDPLADLLAGETYLR------NVH---EKIKKDRLNNAREISGVILAIRTLWFDSQIEAAL 112 (309)
Q Consensus 46 a~~~a~~RA~e~----~~~~Dp~A~~fv~~~~~~------~~~---~~~~~~~~in~~~~~~~~~~~Rt~~iD~~v~~fl 112 (309)
|++++++||.+. +||+||||.+|+++.... ... ... ..+.++ .++++||++||+.+++|+
T Consensus 1 al~~~~~RA~~s~~~~~~~~Dp~A~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~Rt~~iD~~v~~~i 73 (183)
T PF04072_consen 1 ALITAAARAAESKRPDPYFEDPYAARLLSKLGRAWLKDYDFSKFNAASA-RDPGIN------RGYAARTRYIDDAVREFI 73 (183)
T ss_dssp HHHHHHHHHHHHHHHHCSSHTCCCCHHHHCCCCHCC-B--SGHHCHHHH-HHHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCcccCCHhHHHHHcccccccccchhhhccccccc-ccHHHH------hHHHHHHHHHHHHHHHhh
Confidence 678999999984 899999999999887321 100 001 234443 369999999999999999
Q ss_pred hhcCCCccEEEEeCccCccchhhccCCC-CceEEEecchhhHHHHHHHHHhhhccCCCCCCCccCCCceEEEeccCCCCc
Q 021686 113 NSFNSREAQVVLLGAGMDTRAYRLNCLK-ESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIREND 191 (309)
Q Consensus 113 ~~~~~g~~QVV~LGAGlDTr~~RL~~~~-~~~~fEvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~v~~DL~~~~ 191 (309)
++++ +.+|||+||||||||+||+.++. +++|||||+|+|++.|+++|++.....+ +++++|++|+++.+
T Consensus 74 ~~~~-~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~---------~~~~~v~~Dl~~~~ 143 (183)
T PF04072_consen 74 AKHP-GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPP---------ANYRYVPADLRDDS 143 (183)
T ss_dssp HHHT-TESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHH---------EESSEEES-TTSHH
T ss_pred ccCC-CCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCC---------cceeEEeccccchh
Confidence 9886 66799999999999999999853 8999999999999999999999854322 46778999999999
Q ss_pred HHHHHHhcCCCCCCcEEEEecccccccCcccc
Q 021686 192 WLEKLQLSGYKPEKNTVWVLEVLLADFMNQPS 223 (309)
Q Consensus 192 ~~~~L~~~G~d~~~Ptl~i~Egvl~Y~~~~~a 223 (309)
|.+.|.++|++++.||+||+|||+||+.+...
T Consensus 144 ~~~~L~~~g~~~~~ptl~i~Egvl~Yl~~~~~ 175 (183)
T PF04072_consen 144 WIDALPKAGFDPDRPTLFIAEGVLMYLSPEQV 175 (183)
T ss_dssp HHHHHHHCTT-TTSEEEEEEESSGGGS-HHHH
T ss_pred hHHHHHHhCCCCCCCeEEEEcchhhcCCHHHH
Confidence 99999999999999999999999998776553
No 5
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.60 E-value=0.0071 Score=56.58 Aligned_cols=104 Identities=19% Similarity=0.211 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhhcCCCccEEEEeCccCccchh--hccC--CCCceEEEecc-hhhHHHHHHHHHhhhccCCCCCCCccCC
Q 021686 103 WFDSQIEAALNSFNSREAQVVLLGAGMDTRAY--RLNC--LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTA 177 (309)
Q Consensus 103 ~iD~~v~~fl~~~~~g~~QVV~LGAGlDTr~~--RL~~--~~~~~~fEvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s 177 (309)
|+.+.+ +++... .|++|++-||||+=|..- .+.. .+..+++=||. |-|++.-+.+|..+..
T Consensus 55 Fl~RaV-r~la~~-~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~------------ 120 (267)
T PF04672_consen 55 FLRRAV-RYLAEE-AGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR------------ 120 (267)
T ss_dssp HHHHHH-HHHHCT-T---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT------------
T ss_pred HHHHHH-HHHHHh-cCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC------------
Confidence 444444 555543 279999999999988632 2211 13444444444 6777888888877631
Q ss_pred CceEEEeccCCCCcHH-HH-HHhcCCCCCCcEEEEecccccccCcc
Q 021686 178 KSLTTVAADIRENDWL-EK-LQLSGYKPEKNTVWVLEVLLADFMNQ 221 (309)
Q Consensus 178 ~~y~~v~~DL~~~~~~-~~-L~~~G~d~~~Ptl~i~Egvl~Y~~~~ 221 (309)
.+-.+|.+|+++++-+ +. -...-+|.++|+-+++=+||. +++.
T Consensus 121 g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh-~v~D 165 (267)
T PF04672_consen 121 GRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLH-FVPD 165 (267)
T ss_dssp SEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GG-GS-C
T ss_pred ccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeec-cCCC
Confidence 2368999999997533 31 223458999999999999999 5544
No 6
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=73.59 E-value=49 Score=31.76 Aligned_cols=168 Identities=13% Similarity=0.103 Sum_probs=101.4
Q ss_pred hhhhhHHHHHHHHHHHHhhcC--CCccEEEEeCccCccchhhcc-C-CC-CceEEEecc-hhhHHHHHHHHHhhhccCCC
Q 021686 96 ILAIRTLWFDSQIEAALNSFN--SREAQVVLLGAGMDTRAYRLN-C-LK-ESDVFEVDF-SQVLQVKTALIQTAMEFGDE 169 (309)
Q Consensus 96 ~~~~Rt~~iD~~v~~fl~~~~--~g~~QVV~LGAGlDTr~~RL~-~-~~-~~~~fEvD~-P~vi~~K~~~l~~~~~~~~~ 169 (309)
|+=.|-..+..+|.+.+..-. +...-||.+.||-=---+=.. . +. ...+.=.|+ |..++.=+++|++.+-
T Consensus 111 GIR~Rk~~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL---- 186 (311)
T PF12147_consen 111 GIRQRKVHLEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL---- 186 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC----
Confidence 577888888999998887521 245689999999533222221 1 21 245555665 5666777777777532
Q ss_pred CCCCccCCCceEEEeccCCCCcHHHHHHhcCCCCCCcEEEEecccccccCccc-c--------ccCCccEEEecCCCCcc
Q 021686 170 QQHPRMTAKSLTTVAADIRENDWLEKLQLSGYKPEKNTVWVLEVLLADFMNQP-S--------TTLSSSIFHFSSDWPDR 240 (309)
Q Consensus 170 ~~~~~l~s~~y~~v~~DL~~~~~~~~L~~~G~d~~~Ptl~i~Egvl~Y~~~~~-a--------~~~~~~~f~~y~~~~e~ 240 (309)
.+-.++...|..+.+-+..|. -.|+|+|.-|+.-+|.... . .......+.+|+.. +
T Consensus 187 -------~~i~~f~~~dAfd~~~l~~l~------p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQ--P 251 (311)
T PF12147_consen 187 -------EDIARFEQGDAFDRDSLAALD------PAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQ--P 251 (311)
T ss_pred -------ccceEEEecCCCCHhHhhccC------CCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCC--C
Confidence 123488899988754433332 4799999999988555533 1 11222334556432 3
Q ss_pred cCCCCchhHHHHhh--cCCCCCCCCCCCChhhhhhhhcCCCccc
Q 021686 241 LLPTLGFSNVRLSQ--IGDPDAHFGLMNDPLNLFNKLRSLPRSV 282 (309)
Q Consensus 241 i~p~d~Fg~~m~~n--l~e~~~~fg~~~~~~~~~l~~~g~~~~~ 282 (309)
++|.-.|-...+.+ -|++|.-=.|...+++.+..++||...-
T Consensus 252 wHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K~~ 295 (311)
T PF12147_consen 252 WHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEKID 295 (311)
T ss_pred CCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCchhh
Confidence 45544333332333 2355655556778889999999997543
No 7
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=73.01 E-value=22 Score=31.96 Aligned_cols=60 Identities=13% Similarity=0.144 Sum_probs=39.7
Q ss_pred cEEEEeCccCccchhhccC---CCCceEEEecc-hhhHHHHHHHHHhhhccCCCCCCCccCCCceEEEeccCCCC
Q 021686 120 AQVVLLGAGMDTRAYRLNC---LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIREN 190 (309)
Q Consensus 120 ~QVV~LGAGlDTr~~RL~~---~~~~~~fEvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~v~~DL~~~ 190 (309)
..|+-||||-=.....+.. .++.+++=||. |++++.=++.+++... ..+.+++..|+.+.
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~-----------~~~v~~~~~d~~~~ 118 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-----------EIPVEILCNDIRHV 118 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----------CCCeEEEECChhhC
Confidence 4799999998766554432 24678888888 7777665565554321 13567788887653
No 8
>PHA03412 putative methyltransferase; Provisional
Probab=69.37 E-value=5.2 Score=37.05 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=31.3
Q ss_pred HHHHHhhcCCCccEEEEeCccCccchhhccCC---CCceEEEecchhh
Q 021686 108 IEAALNSFNSREAQVVLLGAGMDTRAYRLNCL---KESDVFEVDFSQV 152 (309)
Q Consensus 108 v~~fl~~~~~g~~QVV~LGAGlDTr~~RL~~~---~~~~~fEvD~P~v 152 (309)
..+|+++. | -+..-|||.||-+||=.|. +-+.+++|||-+-
T Consensus 186 ~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (241)
T PHA03412 186 CKKFLDET--G--LEMNPGCGIDTGYYLEDWKGVKPLCEVVCMEFNEP 229 (241)
T ss_pred HHHHHHhc--C--eeecCCCCccceeehhhccCCCccceEEEEeecCc
Confidence 44666653 3 5889999999999999983 4568899998653
No 9
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=68.92 E-value=11 Score=33.89 Aligned_cols=54 Identities=20% Similarity=0.195 Sum_probs=41.7
Q ss_pred CccEEEEeCccCccchhhccC-CCCceEEEecchhhHHHHHHHHHhhhccCCCCCCCccCCCceEEEeccCCC
Q 021686 118 REAQVVLLGAGMDTRAYRLNC-LKESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRE 189 (309)
Q Consensus 118 g~~QVV~LGAGlDTr~~RL~~-~~~~~~fEvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~v~~DL~~ 189 (309)
+.++||-||+|.=.....+.. .++++++-+|+|+|++.-.+ . +++.+++.|+.+
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~----~--------------~rv~~~~gd~f~ 154 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE----A--------------DRVEFVPGDFFD 154 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH----T--------------TTEEEEES-TTT
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc----c--------------cccccccccHHh
Confidence 467999999999888888864 57899999999999876555 1 589999999983
No 10
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=66.38 E-value=21 Score=32.48 Aligned_cols=101 Identities=14% Similarity=0.166 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHHHhhcCCCccEEEEeCccCccchhhccCCCCceEEEecc-hhhHHHHHHHHHhhhccCCCCCCCccCC
Q 021686 99 IRTLWFDSQIEAALNSFNSREAQVVLLGAGMDTRAYRLNCLKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTA 177 (309)
Q Consensus 99 ~Rt~~iD~~v~~fl~~~~~g~~QVV~LGAGlDTr~~RL~~~~~~~~fEvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s 177 (309)
+|...+..-+.+.++..+.....|+-+|||.-.....+... +..++=||. |++++.-++.+.+.+. .
T Consensus 25 ~r~~~~~~~~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~-----------~ 92 (255)
T PRK11036 25 IRQAILWQDLDRLLAELPPRPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGV-----------S 92 (255)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCC-----------c
Confidence 44444444445555443223458999999999888888753 567788887 6666655555544321 1
Q ss_pred CceEEEeccCCCCcHHHHHHhcCCCCCCcEEEEecccccccC
Q 021686 178 KSLTTVAADIRENDWLEKLQLSGYKPEKNTVWVLEVLLADFM 219 (309)
Q Consensus 178 ~~y~~v~~DL~~~~~~~~L~~~G~d~~~Ptl~i~Egvl~Y~~ 219 (309)
.+++++.+|+.+. .. ... ..--++++-.++.|+.
T Consensus 93 ~~v~~~~~d~~~l--~~-~~~-----~~fD~V~~~~vl~~~~ 126 (255)
T PRK11036 93 DNMQFIHCAAQDI--AQ-HLE-----TPVDLILFHAVLEWVA 126 (255)
T ss_pred cceEEEEcCHHHH--hh-hcC-----CCCCEEEehhHHHhhC
Confidence 4567888777642 11 111 2234566666666443
No 11
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=60.84 E-value=27 Score=32.74 Aligned_cols=61 Identities=13% Similarity=0.173 Sum_probs=45.3
Q ss_pred ccEEEEeCccCccchhhccC-CCCceEEEecchhhHHHHHHHHHhhhccCCCCCCCccCCCceEEEeccCCCC
Q 021686 119 EAQVVLLGAGMDTRAYRLNC-LKESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIREN 190 (309)
Q Consensus 119 ~~QVV~LGAGlDTr~~RL~~-~~~~~~fEvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~v~~DL~~~ 190 (309)
...|+-+|||.=+....+.. .++++++=+|.|++++.-++.+.+.+. ++++++++.|+.+.
T Consensus 150 ~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl-----------~~rv~~~~~d~~~~ 211 (306)
T TIGR02716 150 VKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGV-----------ADRMRGIAVDIYKE 211 (306)
T ss_pred CCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCc-----------cceEEEEecCccCC
Confidence 45899999999888777754 356778888899998876665555421 25788999998753
No 12
>PHA03411 putative methyltransferase; Provisional
Probab=60.23 E-value=9.8 Score=36.03 Aligned_cols=40 Identities=25% Similarity=0.264 Sum_probs=30.3
Q ss_pred HHHHhhcCCCccEEEEeCccCccchhhccCC---CCceEEEecchhh
Q 021686 109 EAALNSFNSREAQVVLLGAGMDTRAYRLNCL---KESDVFEVDFSQV 152 (309)
Q Consensus 109 ~~fl~~~~~g~~QVV~LGAGlDTr~~RL~~~---~~~~~fEvD~P~v 152 (309)
+++++.+ | =+.--|||.||-+||=.|. +-+.+++|||-+-
T Consensus 199 ~~~l~~~--g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (279)
T PHA03411 199 LKWSKQT--G--LVTYAGCGIDTSIYRDEWHSTNVLTEVVEVRYYEK 241 (279)
T ss_pred HHHHHhc--C--cEecCCCCcccceehhhccCCCccceEEEEEeccc
Confidence 3555654 3 4788899999999999983 4568899998553
No 13
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=59.82 E-value=72 Score=29.35 Aligned_cols=142 Identities=13% Similarity=0.085 Sum_probs=84.2
Q ss_pred HHHhhcCCCccEEEEeCccCccchhhccCCCCceEEEecchhhHH-HHHHHHHhhhccCCCCCCCccCCCceE-EEeccC
Q 021686 110 AALNSFNSREAQVVLLGAGMDTRAYRLNCLKESDVFEVDFSQVLQ-VKTALIQTAMEFGDEQQHPRMTAKSLT-TVAADI 187 (309)
Q Consensus 110 ~fl~~~~~g~~QVV~LGAGlDTr~~RL~~~~~~~~fEvD~P~vi~-~K~~~l~~~~~~~~~~~~~~l~s~~y~-~v~~DL 187 (309)
.|+-++ ++.-|+-+|||--+-+=-+++.+.+++.-||--+-++ .-.+-+.+. .+ .++. +|-+|.
T Consensus 70 ~~~gk~--~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~---k~---------~~~~~fvva~g 135 (252)
T KOG4300|consen 70 YFLGKS--GKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEK---KP---------LQVERFVVADG 135 (252)
T ss_pred HHhccc--CccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhc---cC---------cceEEEEeech
Confidence 566654 4556899999999988777777788999999755443 333333333 11 2444 788888
Q ss_pred CCCcHHHHHHhcCCCCCCcEEEEecccccccCccc-------cccCCccEEEecCCCCcccCCCCchhHHHHhhcCCC--
Q 021686 188 RENDWLEKLQLSGYKPEKNTVWVLEVLLADFMNQP-------STTLSSSIFHFSSDWPDRLLPTLGFSNVRLSQIGDP-- 258 (309)
Q Consensus 188 ~~~~~~~~L~~~G~d~~~Ptl~i~Egvl~Y~~~~~-------a~~~~~~~f~~y~~~~e~i~p~d~Fg~~m~~nl~e~-- 258 (309)
++.. .|.+.-+|.-.-||++ |-..... .---|+..+.+. |-....++|=..|++|..||
T Consensus 136 e~l~---~l~d~s~DtVV~TlvL-----CSve~~~k~L~e~~rlLRpgG~iifi----EHva~~y~~~n~i~q~v~ep~~ 203 (252)
T KOG4300|consen 136 ENLP---QLADGSYDTVVCTLVL-----CSVEDPVKQLNEVRRLLRPGGRIIFI----EHVAGEYGFWNRILQQVAEPLW 203 (252)
T ss_pred hcCc---ccccCCeeeEEEEEEE-----eccCCHHHHHHHHHHhcCCCcEEEEE----ecccccchHHHHHHHHHhchhh
Confidence 7632 3444434433333333 3121110 011256677777 77777777777789999998
Q ss_pred -----CCCCCCCCChhhhhhhhcCCCc
Q 021686 259 -----DAHFGLMNDPLNLFNKLRSLPR 280 (309)
Q Consensus 259 -----~~~fg~~~~~~~~~l~~~g~~~ 280 (309)
||+..+ .+...|..+.|..
T Consensus 204 ~~~~dGC~ltr---d~~e~Leda~f~~ 227 (252)
T KOG4300|consen 204 HLESDGCVLTR---DTGELLEDAEFSI 227 (252)
T ss_pred heeccceEEeh---hHHHHhhhccccc
Confidence 554433 2344555555543
No 14
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=57.25 E-value=44 Score=27.60 Aligned_cols=81 Identities=16% Similarity=0.238 Sum_probs=51.1
Q ss_pred ccEEEEeCccCccchhhcc-C-CCCceEEEecc-hhhHHHHHHHHHhhhccCCCCCCCccCCCceEEEeccCCCCcHHHH
Q 021686 119 EAQVVLLGAGMDTRAYRLN-C-LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEK 195 (309)
Q Consensus 119 ~~QVV~LGAGlDTr~~RL~-~-~~~~~~fEvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~v~~DL~~~~~~~~ 195 (309)
...|+-||||.=...+.+. . .++.+++=||. |++++.=++.+++.. ..+++++..|+.+.+- .
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~------------~~ni~~~~~d~~~l~~--~ 69 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG------------LDNIEFIQGDIEDLPQ--E 69 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT------------STTEEEEESBTTCGCG--C
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc------------ccccceEEeehhcccc--c
Confidence 4589999999887777776 2 34677888886 555555454444432 1478999999986221 1
Q ss_pred HHhcCCCCCCcEEEEecccccccC
Q 021686 196 LQLSGYKPEKNTVWVLEVLLADFM 219 (309)
Q Consensus 196 L~~~G~d~~~Ptl~i~Egvl~Y~~ 219 (309)
+. ..--++++-+++.++.
T Consensus 70 ~~------~~~D~I~~~~~l~~~~ 87 (152)
T PF13847_consen 70 LE------EKFDIIISNGVLHHFP 87 (152)
T ss_dssp SS------TTEEEEEEESTGGGTS
T ss_pred cC------CCeeEEEEcCchhhcc
Confidence 11 2334677777776443
No 15
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=51.62 E-value=1.1e+02 Score=31.00 Aligned_cols=101 Identities=20% Similarity=0.160 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHHHhhcCC------CccEEEEeCccCccchhhccC-----CCCceEEEecc-hhhHHHHHHHHHhhhcc
Q 021686 99 IRTLWFDSQIEAALNSFNS------REAQVVLLGAGMDTRAYRLNC-----LKESDVFEVDF-SQVLQVKTALIQTAMEF 166 (309)
Q Consensus 99 ~Rt~~iD~~v~~fl~~~~~------g~~QVV~LGAGlDTr~~RL~~-----~~~~~~fEvD~-P~vi~~K~~~l~~~~~~ 166 (309)
+|....+++|.++|..... +.+.|+.+|||--....+... ...+++|=|.- |..+...+++++..+-
T Consensus 161 vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w- 239 (448)
T PF05185_consen 161 VKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW- 239 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC-
Confidence 4555555556555543210 135799999999998655432 13467777765 4334343344444421
Q ss_pred CCCCCCCccCCCceEEEeccCCCCcHHHHHHhcCCCCCCcEEEEecccccccCc
Q 021686 167 GDEQQHPRMTAKSLTTVAADIRENDWLEKLQLSGYKPEKNTVWVLEVLLADFMN 220 (309)
Q Consensus 167 ~~~~~~~~l~s~~y~~v~~DL~~~~~~~~L~~~G~d~~~Ptl~i~Egvl~Y~~~ 220 (309)
.++++.|..|.++.+.. .+-=++|+|.+-.+..+
T Consensus 240 ----------~~~V~vi~~d~r~v~lp----------ekvDIIVSElLGsfg~n 273 (448)
T PF05185_consen 240 ----------GDKVTVIHGDMREVELP----------EKVDIIVSELLGSFGDN 273 (448)
T ss_dssp ----------TTTEEEEES-TTTSCHS----------S-EEEEEE---BTTBTT
T ss_pred ----------CCeEEEEeCcccCCCCC----------CceeEEEEeccCCcccc
Confidence 25789999999985442 35568999977654333
No 16
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=46.42 E-value=1.1e+02 Score=29.22 Aligned_cols=72 Identities=14% Similarity=0.191 Sum_probs=43.6
Q ss_pred HHHHHHHhhcCCCccEEEEeCccCccchhhccCCCCceEEEecchhhHHHHHHHHHhhhccCCCCCCCccCCCceEEEec
Q 021686 106 SQIEAALNSFNSREAQVVLLGAGMDTRAYRLNCLKESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAA 185 (309)
Q Consensus 106 ~~v~~fl~~~~~g~~QVV~LGAGlDTr~~RL~~~~~~~~fEvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~v~~ 185 (309)
+.+..++.... | +.|+-+|||.=...+++.......++-||.-..+-.+.+.+.+.... ..+.+++.+
T Consensus 112 ~~l~~~l~~l~-g-~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~----------~~~i~~~~~ 179 (322)
T PRK15068 112 DRVLPHLSPLK-G-RTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGN----------DQRAHLLPL 179 (322)
T ss_pred HHHHHhhCCCC-C-CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCC----------CCCeEEEeC
Confidence 34455554332 3 57999999999999998753333588888655443333333322110 135778888
Q ss_pred cCCC
Q 021686 186 DIRE 189 (309)
Q Consensus 186 DL~~ 189 (309)
|+.+
T Consensus 180 d~e~ 183 (322)
T PRK15068 180 GIEQ 183 (322)
T ss_pred CHHH
Confidence 8765
No 17
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=44.62 E-value=74 Score=31.37 Aligned_cols=94 Identities=21% Similarity=0.248 Sum_probs=63.8
Q ss_pred hhhhHHHHHHHHHHHHhhcCCCccEEEEeCccCccchhhccCCCCceEEEecchhhHHHHHHHHHhhhccCCCCCCCccC
Q 021686 97 LAIRTLWFDSQIEAALNSFNSREAQVVLLGAGMDTRAYRLNCLKESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMT 176 (309)
Q Consensus 97 ~~~Rt~~iD~~v~~fl~~~~~g~~QVV~LGAGlDTr~~RL~~~~~~~~fEvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~ 176 (309)
-++||-..-+.|.+--..+. .+.||-+|||.--..|=-...+.-++|-|.--++.+.-+++++.+. -
T Consensus 158 DYVRTgTY~~Ail~N~sDF~--~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~-----------~ 224 (517)
T KOG1500|consen 158 DYVRTGTYQRAILENHSDFQ--DKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNN-----------L 224 (517)
T ss_pred HHHhhhHHHHHHHhcccccC--CcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCC-----------c
Confidence 46777666655544333332 3589999999988755443334568999999999999999988762 1
Q ss_pred CCceEEEeccCCCCcHHHHHHhcCCCCCCcEEEEecc
Q 021686 177 AKSLTTVAADIRENDWLEKLQLSGYKPEKNTVWVLEV 213 (309)
Q Consensus 177 s~~y~~v~~DL~~~~~~~~L~~~G~d~~~Ptl~i~Eg 213 (309)
+++...|+.-+.+.++.+ +--++|+|-
T Consensus 225 ~~rItVI~GKiEdieLPE----------k~DviISEP 251 (517)
T KOG1500|consen 225 ADRITVIPGKIEDIELPE----------KVDVIISEP 251 (517)
T ss_pred cceEEEccCccccccCch----------hccEEEecc
Confidence 367888888887755533 334677773
No 18
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=42.11 E-value=1.1e+02 Score=27.71 Aligned_cols=59 Identities=15% Similarity=0.274 Sum_probs=38.3
Q ss_pred cEEEEeCccCccchhhccC---CCCceEEEecc-hhhHHHHHHHHHhhhccCCCCCCCccCCCceEEEeccCCC
Q 021686 120 AQVVLLGAGMDTRAYRLNC---LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRE 189 (309)
Q Consensus 120 ~QVV~LGAGlDTr~~RL~~---~~~~~~fEvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~v~~DL~~ 189 (309)
..|+-||||.=.....+.. .++.+++=||. |++++.=++.+..... ..+..++..|+.+
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~-----------~~~v~~~~~d~~~ 120 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-----------PTPVDVIEGDIRD 120 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----------CCCeEEEeCChhh
Confidence 5799999997665443322 25678999997 7777666666654321 1346677777654
No 19
>PLN02366 spermidine synthase
Probab=41.25 E-value=1e+02 Score=29.41 Aligned_cols=44 Identities=18% Similarity=0.340 Sum_probs=30.4
Q ss_pred CccEEEEeCccCccchhhccC-C--CCceEEEecchhhHHHHHHHHHh
Q 021686 118 REAQVVLLGAGMDTRAYRLNC-L--KESDVFEVDFSQVLQVKTALIQT 162 (309)
Q Consensus 118 g~~QVV~LGAGlDTr~~RL~~-~--~~~~~fEvD~P~vi~~K~~~l~~ 162 (309)
..+.|+.+|+|-=.....+.. + ..+..+|+| |+|++.=++.+..
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD-~~Vi~~ar~~f~~ 137 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEID-KMVIDVSKKFFPD 137 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECC-HHHHHHHHHhhhh
Confidence 456799999997655544432 2 467889999 6777776666654
No 20
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=41.22 E-value=1.3e+02 Score=26.72 Aligned_cols=80 Identities=24% Similarity=0.243 Sum_probs=47.5
Q ss_pred ccEEEEeCccCccchhhccCCCCceEEEecchhhHHHHHHHHHhhhccCCCCCCCccCCCceEEEeccCCCCcHHHHHHh
Q 021686 119 EAQVVLLGAGMDTRAYRLNCLKESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKLQL 198 (309)
Q Consensus 119 ~~QVV~LGAGlDTr~~RL~~~~~~~~fEvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~v~~DL~~~~~~~~L~~ 198 (309)
...++-||||-=--+.-|.. .+..+.=+|.-++--.|.+.+.+... -..+...+|+.+.++.
T Consensus 31 ~g~~LDlgcG~GRNalyLA~-~G~~VtAvD~s~~al~~l~~~a~~~~------------l~i~~~~~Dl~~~~~~----- 92 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLAS-QGFDVTAVDISPVALEKLQRLAEEEG------------LDIRTRVADLNDFDFP----- 92 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHH-TT-EEEEEESSHHHHHHHHHHHHHTT-------------TEEEEE-BGCCBS-T-----
T ss_pred CCcEEEcCCCCcHHHHHHHH-CCCeEEEEECCHHHHHHHHHHHhhcC------------ceeEEEEecchhcccc-----
Confidence 45899999998666666664 35666666766655555555555432 1367788898875431
Q ss_pred cCCCCCCcEEEEecccccccCcc
Q 021686 199 SGYKPEKNTVWVLEVLLADFMNQ 221 (309)
Q Consensus 199 ~G~d~~~Ptl~i~Egvl~Y~~~~ 221 (309)
..=-+|++-+|++|+.++
T Consensus 93 -----~~yD~I~st~v~~fL~~~ 110 (192)
T PF03848_consen 93 -----EEYDFIVSTVVFMFLQRE 110 (192)
T ss_dssp -----TTEEEEEEESSGGGS-GG
T ss_pred -----CCcCEEEEEEEeccCCHH
Confidence 112377888999966654
No 21
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=40.64 E-value=69 Score=24.45 Aligned_cols=57 Identities=21% Similarity=0.276 Sum_probs=40.8
Q ss_pred cEEEEeCccCccchhhccC-CCCceEEEecc-hhhHHHHHHHHHhhhccCCCCCCCccCCCceEEEeccC
Q 021686 120 AQVVLLGAGMDTRAYRLNC-LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADI 187 (309)
Q Consensus 120 ~QVV~LGAGlDTr~~RL~~-~~~~~~fEvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~v~~DL 187 (309)
..|+-||||.=.....+.. .++.+++=||. |++++.=++.+.+... .++.+++..|+
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~i~~~~~d~ 61 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL-----------SDRITFVQGDA 61 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT-----------TTTEEEEESCC
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC-----------CCCeEEEECcc
Confidence 3699999999888777765 24677888887 6777666666633211 26789999999
No 22
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=37.50 E-value=1.6e+02 Score=27.07 Aligned_cols=90 Identities=16% Similarity=0.152 Sum_probs=54.8
Q ss_pred hhhHHHHHHHHHHHHhhcCCCccEEEEeCccCccchhhccC-CCCceEEEecchhhHHHHHHHHHhhhccCCCCCCCccC
Q 021686 98 AIRTLWFDSQIEAALNSFNSREAQVVLLGAGMDTRAYRLNC-LKESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMT 176 (309)
Q Consensus 98 ~~Rt~~iD~~v~~fl~~~~~g~~QVV~LGAGlDTr~~RL~~-~~~~~~fEvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~ 176 (309)
.+-...+++++. .+.-. ....||-+|+|.=..-..|.. ...+..+|.|.- . .+.|++.-. .
T Consensus 13 L~~~~~~~~Iv~-~~~~~--~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~-~----~~~L~~~~~----------~ 74 (262)
T PF00398_consen 13 LVDPNIADKIVD-ALDLS--EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPD-L----AKHLKERFA----------S 74 (262)
T ss_dssp EEHHHHHHHHHH-HHTCG--TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHH-H----HHHHHHHCT----------T
T ss_pred eCCHHHHHHHHH-hcCCC--CCCEEEEeCCCCccchhhHhcccCcceeecCcHh-H----HHHHHHHhh----------h
Confidence 344445566554 44432 246899999999888777754 367899999942 2 222232211 1
Q ss_pred CCceEEEeccCCCCcHHHHHHhcCCCCCCcEEEEe
Q 021686 177 AKSLTTVAADIRENDWLEKLQLSGYKPEKNTVWVL 211 (309)
Q Consensus 177 s~~y~~v~~DL~~~~~~~~L~~~G~d~~~Ptl~i~ 211 (309)
..++.++..|+.+.++.+.+ ...+.++++
T Consensus 75 ~~~~~vi~~D~l~~~~~~~~------~~~~~~vv~ 103 (262)
T PF00398_consen 75 NPNVEVINGDFLKWDLYDLL------KNQPLLVVG 103 (262)
T ss_dssp CSSEEEEES-TTTSCGGGHC------SSSEEEEEE
T ss_pred cccceeeecchhccccHHhh------cCCceEEEE
Confidence 25789999999886665443 345666665
No 23
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=36.18 E-value=3e+02 Score=25.83 Aligned_cols=101 Identities=12% Similarity=0.113 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhhcCCCccEEEEeCccCccchhhccC-C-CCceEEEecchh-hHHHHHHHHHhhhccCCCCCCCccCCCc
Q 021686 103 WFDSQIEAALNSFNSREAQVVLLGAGMDTRAYRLNC-L-KESDVFEVDFSQ-VLQVKTALIQTAMEFGDEQQHPRMTAKS 179 (309)
Q Consensus 103 ~iD~~v~~fl~~~~~g~~QVV~LGAGlDTr~~RL~~-~-~~~~~fEvD~P~-vi~~K~~~l~~~~~~~~~~~~~~l~s~~ 179 (309)
++++...+..+..+ ....||-||||-=...-.|.. . .+.+|+=||..+ +++.=++.+.+..+ .-+
T Consensus 49 il~~~~~~ia~~~~-~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p-----------~~~ 116 (301)
T TIGR03438 49 ILERHADEIAAATG-AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP-----------QLE 116 (301)
T ss_pred HHHHHHHHHHHhhC-CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC-----------Cce
Confidence 44444444443333 235799999998776655543 1 257788888744 44444444443211 124
Q ss_pred eEEEeccCCCC-cHHHHHHhcCCCCCCcEEEEecccccccCcc
Q 021686 180 LTTVAADIREN-DWLEKLQLSGYKPEKNTVWVLEVLLADFMNQ 221 (309)
Q Consensus 180 y~~v~~DL~~~-~~~~~L~~~G~d~~~Ptl~i~Egvl~Y~~~~ 221 (309)
...+..|+.+. ++.. . ++ +.+.++++-|...+..+.
T Consensus 117 v~~i~gD~~~~~~~~~---~--~~-~~~~~~~~~gs~~~~~~~ 153 (301)
T TIGR03438 117 VHGICADFTQPLALPP---E--PA-AGRRLGFFPGSTIGNFTP 153 (301)
T ss_pred EEEEEEcccchhhhhc---c--cc-cCCeEEEEecccccCCCH
Confidence 56788899762 2211 1 11 346777887777665543
No 24
>COG3580 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.32 E-value=26 Score=33.82 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=28.1
Q ss_pred HHHHHhhcCC-CccEEEEeCccCccchhhcc-----CCCCc-eEEEecc
Q 021686 108 IEAALNSFNS-REAQVVLLGAGMDTRAYRLN-----CLKES-DVFEVDF 149 (309)
Q Consensus 108 v~~fl~~~~~-g~~QVV~LGAGlDTr~~RL~-----~~~~~-~~fEvD~ 149 (309)
..+|+++|++ .-.|++|.|||+|.--.-+- ..+.+ ++.++|-
T Consensus 264 AA~fvak~~nlegV~l~SFgCG~Davttd~i~eIl~~~nk~ytvlkIDE 312 (351)
T COG3580 264 AAKFVAKHPNLEGVQLVSFGCGLDAVTTDLIEEILEGHNKIYTVLKIDE 312 (351)
T ss_pred HHHHHhcCCCeeeEEEeecccCcchhHHHHHHHHHHhCCCeeEEEEecC
Confidence 3477788863 12599999999998755442 12234 7888884
No 25
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=30.04 E-value=3.2e+02 Score=23.09 Aligned_cols=70 Identities=14% Similarity=0.150 Sum_probs=43.1
Q ss_pred HHHHHHHHhhcCCCccEEEEeCccCccchhhccC-CCC--ceEEEecchhhHHHHHHHHHhhhccCCCCCCCccCCCceE
Q 021686 105 DSQIEAALNSFNSREAQVVLLGAGMDTRAYRLNC-LKE--SDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLT 181 (309)
Q Consensus 105 D~~v~~fl~~~~~g~~QVV~LGAGlDTr~~RL~~-~~~--~~~fEvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~ 181 (309)
..++.+++..++ ...|+-||||.=....-+.. .+. +..+|++...+...|+. ++.+.. ++.+
T Consensus 20 t~lL~~~l~~~~--~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n-~~~n~~------------~~v~ 84 (170)
T PF05175_consen 20 TRLLLDNLPKHK--GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRN-AERNGL------------ENVE 84 (170)
T ss_dssp HHHHHHHHHHHT--TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHH-HHHTTC------------TTEE
T ss_pred HHHHHHHHhhcc--CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHH-HHhcCc------------cccc
Confidence 345556666543 45799999999887777654 234 77778885554444433 343321 2367
Q ss_pred EEeccCCC
Q 021686 182 TVAADIRE 189 (309)
Q Consensus 182 ~v~~DL~~ 189 (309)
++..|+.+
T Consensus 85 ~~~~d~~~ 92 (170)
T PF05175_consen 85 VVQSDLFE 92 (170)
T ss_dssp EEESSTTT
T ss_pred cccccccc
Confidence 78888764
No 26
>PLN03075 nicotianamine synthase; Provisional
Probab=28.65 E-value=3.8e+02 Score=25.58 Aligned_cols=82 Identities=20% Similarity=0.331 Sum_probs=46.0
Q ss_pred CccEEEEeCcc-CccchhhccC--CCCceEEEecc-hhhHHHHHHHHHhhhccCCCCCCCccCCCceEEEeccCCCCcHH
Q 021686 118 REAQVVLLGAG-MDTRAYRLNC--LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWL 193 (309)
Q Consensus 118 g~~QVV~LGAG-lDTr~~RL~~--~~~~~~fEvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~v~~DL~~~~~~ 193 (309)
+.++|+-+||| .=-.+.-+.. .++.++.-+|. |+.++.-++.+.....+ +++.++...|+.+..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL----------~~rV~F~~~Da~~~~-- 190 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL----------SKRMFFHTADVMDVT-- 190 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc----------cCCcEEEECchhhcc--
Confidence 35789999999 4223333321 24556666665 45555555555442222 256889988887521
Q ss_pred HHHHhcCCCCCCcEEEEecccccccC
Q 021686 194 EKLQLSGYKPEKNTVWVLEVLLADFM 219 (309)
Q Consensus 194 ~~L~~~G~d~~~Ptl~i~Egvl~Y~~ 219 (309)
..+ ..| -.+|+. ++.|+.
T Consensus 191 ~~l--~~F----DlVF~~--ALi~~d 208 (296)
T PLN03075 191 ESL--KEY----DVVFLA--ALVGMD 208 (296)
T ss_pred ccc--CCc----CEEEEe--cccccc
Confidence 111 123 367777 777664
No 27
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=27.73 E-value=1.5e+02 Score=25.05 Aligned_cols=57 Identities=18% Similarity=0.186 Sum_probs=35.0
Q ss_pred ccEEEEeCccCccchhhccC-CCCceEEEecchhhHHHHHHHHHhhhccCCCCCCCccCCCceEEEeccCCCC
Q 021686 119 EAQVVLLGAGMDTRAYRLNC-LKESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIREN 190 (309)
Q Consensus 119 ~~QVV~LGAGlDTr~~RL~~-~~~~~~fEvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~v~~DL~~~ 190 (309)
...|+-+|||.=.....+.. ...+.-+|+| +.+++.-++.+... .+.+++..|+.+.
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~-~~~~~~~~~~~~~~--------------~~v~ii~~D~~~~ 71 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLERAARVTAIEID-PRLAPRLREKFAAA--------------DNLTVIHGDALKF 71 (169)
T ss_pred cCEEEEECCCccHHHHHHHhcCCeEEEEECC-HHHHHHHHHHhccC--------------CCEEEEECchhcC
Confidence 35899999997666666654 2456677777 33444333333221 3577888888754
No 28
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=25.30 E-value=61 Score=30.26 Aligned_cols=66 Identities=15% Similarity=0.189 Sum_probs=37.9
Q ss_pred hhhhHHHHHHHHHHHHhhcCCCccEEEEeCccCccchh-hccCCCCceEEEecc-hhhHHHHHHHHHhh
Q 021686 97 LAIRTLWFDSQIEAALNSFNSREAQVVLLGAGMDTRAY-RLNCLKESDVFEVDF-SQVLQVKTALIQTA 163 (309)
Q Consensus 97 ~~~Rt~~iD~~v~~fl~~~~~g~~QVV~LGAGlDTr~~-RL~~~~~~~~fEvD~-P~vi~~K~~~l~~~ 163 (309)
+-=|.-.+|++...-...-+ ...-|+-|||||-+.++ .+...++.+|+=.|. ...++.=.+.+...
T Consensus 85 T~ERl~~Ld~fY~~if~~~~-~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l 152 (251)
T PF07091_consen 85 TRERLPNLDEFYDEIFGRIP-PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL 152 (251)
T ss_dssp HHCCGGGHHHHHHHHCCCS----SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT
T ss_pred hhhhhhhHHHHHHHHHhcCC-CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh
Confidence 44455556665543332212 24689999999999976 444456778877775 45556655555554
No 29
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=23.60 E-value=3e+02 Score=23.29 Aligned_cols=56 Identities=20% Similarity=0.208 Sum_probs=35.4
Q ss_pred cEEEEeCccCccchhhccCCCCceEEEecc-hhhHHHHHHHHHhhhccCCCCCCCccCCCceEEEeccCCC
Q 021686 120 AQVVLLGAGMDTRAYRLNCLKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRE 189 (309)
Q Consensus 120 ~QVV~LGAGlDTr~~RL~~~~~~~~fEvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~v~~DL~~ 189 (309)
..|+.||||.=.....+..... +++-+|. |++++.=++.+.... .+..++.+|+.+
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-------------~~~~~~~~d~~~ 77 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNN-------------VGLDVVMTDLFK 77 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcC-------------CceEEEEccccc
Confidence 4699999999888777765333 6777775 666554444444321 135667777643
No 30
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=23.18 E-value=2.9e+02 Score=25.32 Aligned_cols=56 Identities=18% Similarity=0.249 Sum_probs=34.2
Q ss_pred cEEEEeCccCccchhhccCCCCceEEEecc-hhhHHHHHHHHHhhhccCCCCCCCccCCCceEEEeccCCC
Q 021686 120 AQVVLLGAGMDTRAYRLNCLKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRE 189 (309)
Q Consensus 120 ~QVV~LGAGlDTr~~RL~~~~~~~~fEvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~v~~DL~~ 189 (309)
..|+-+|||.-.....+....+.+++=+|. |++++.-++.... ..+..++.+|+.+
T Consensus 54 ~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--------------~~~i~~~~~D~~~ 110 (263)
T PTZ00098 54 SKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--------------KNKIEFEANDILK 110 (263)
T ss_pred CEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc--------------CCceEEEECCccc
Confidence 479999999877666664323457777777 4444433322221 1356778888764
No 31
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=22.02 E-value=3.2e+02 Score=23.93 Aligned_cols=58 Identities=19% Similarity=0.216 Sum_probs=35.3
Q ss_pred cEEEEeCccCccchhhccC--CCCceEEEecc-hhhHHHHHHHHHhhhccCCCCCCCccCCCceEEEeccCCC
Q 021686 120 AQVVLLGAGMDTRAYRLNC--LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRE 189 (309)
Q Consensus 120 ~QVV~LGAGlDTr~~RL~~--~~~~~~fEvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~v~~DL~~ 189 (309)
..|+-+|||.=.....+.. ++...++=+|. |++++.-++.++... .+++.++..|..+
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~------------~~~v~~~~~d~~~ 107 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG------------LHNVELVHGNAME 107 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC------------CCceEEEEechhc
Confidence 4799999998776666643 23456677776 566555444444321 1356677777654
No 32
>PLN02244 tocopherol O-methyltransferase
Probab=21.73 E-value=2.6e+02 Score=26.80 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=37.4
Q ss_pred cEEEEeCccCccchhhccCCCCceEEEecchhhHHHHH-HHHHhhhccCCCCCCCccCCCceEEEeccCCCC
Q 021686 120 AQVVLLGAGMDTRAYRLNCLKESDVFEVDFSQVLQVKT-ALIQTAMEFGDEQQHPRMTAKSLTTVAADIREN 190 (309)
Q Consensus 120 ~QVV~LGAGlDTr~~RL~~~~~~~~fEvD~P~vi~~K~-~~l~~~~~~~~~~~~~~l~s~~y~~v~~DL~~~ 190 (309)
..|+-+|||.=.....|....+..++=||.-+.+..+. +..++.+ . ..+..++..|..+.
T Consensus 120 ~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g-~----------~~~v~~~~~D~~~~ 180 (340)
T PLN02244 120 KRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQG-L----------SDKVSFQVADALNQ 180 (340)
T ss_pred CeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcC-C----------CCceEEEEcCcccC
Confidence 57999999988877777642256777778754444333 3333321 1 13577888887653
No 33
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=20.71 E-value=1.9e+02 Score=25.13 Aligned_cols=59 Identities=10% Similarity=0.168 Sum_probs=37.6
Q ss_pred ccEEEEeCccCccchhhccC-CCCceEEEecc-hhhHHHHHHHHHhhhccCCCCCCCccCCCceEEEeccCCC
Q 021686 119 EAQVVLLGAGMDTRAYRLNC-LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRE 189 (309)
Q Consensus 119 ~~QVV~LGAGlDTr~~RL~~-~~~~~~fEvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~v~~DL~~ 189 (309)
...|+-||||.=.....+.. .++..++-||. +++++.-.+.+.+.+ -.+++++.+|+.+
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~------------l~ni~~i~~d~~~ 77 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG------------LKNLHVLCGDANE 77 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC------------CCCEEEEccCHHH
Confidence 34799999999888777764 34567777776 444443333344331 1367888888864
No 34
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=20.07 E-value=3.6e+02 Score=25.81 Aligned_cols=150 Identities=9% Similarity=0.046 Sum_probs=73.6
Q ss_pred cEEEEeCccCccchhhccCCCCceEEEecchhhHHHHHHHHHhhhccCCCCCCCccCCCceEEEeccCCCCcHHHHHHhc
Q 021686 120 AQVVLLGAGMDTRAYRLNCLKESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKLQLS 199 (309)
Q Consensus 120 ~QVV~LGAGlDTr~~RL~~~~~~~~fEvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~v~~DL~~~~~~~~L~~~ 199 (309)
+.|+-+|||.-...+++.......++-||.-..+-...+.+++.... ..+.+++.+|+.+... ..
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~----------~~~v~~~~~~ie~lp~-----~~ 187 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDN----------DKRAILEPLGIEQLHE-----LY 187 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhcc----------CCCeEEEECCHHHCCC-----CC
Confidence 58999999998877887653334688999755443222222221100 1346677777654221 11
Q ss_pred CCCCCCcEEEEecccccccCcccc------cc-CCccEEEec---CCCC--cccCCCCchhHHHHhhcCCCCCCCCCCCC
Q 021686 200 GYKPEKNTVWVLEVLLADFMNQPS------TT-LSSSIFHFS---SDWP--DRLLPTLGFSNVRLSQIGDPDAHFGLMND 267 (309)
Q Consensus 200 G~d~~~Ptl~i~Egvl~Y~~~~~a------~~-~~~~~f~~y---~~~~--e~i~p~d~Fg~~m~~nl~e~~~~fg~~~~ 267 (309)
.| -++++.+|+.++..... .. -++..+++- .+.. ..+.|.+.+.+ | +...|.....
T Consensus 188 ~F-----D~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k-~------~nv~flpS~~ 255 (314)
T TIGR00452 188 AF-----DTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAK-M------KNVYFIPSVS 255 (314)
T ss_pred Cc-----CEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHh-c------cccccCCCHH
Confidence 23 25667777764322210 11 123333221 1111 11123333332 1 1122334455
Q ss_pred hhhhhhhhcCCCcccc---cCCCCCCCceeEE
Q 021686 268 PLNLFNKLRSLPRSVQ---THPDDGTPCRRLY 296 (309)
Q Consensus 268 ~~~~~l~~~g~~~~~~---~~p~~~~~~~R~~ 296 (309)
.+..+|+++||..... ...|..-|+..=|
T Consensus 256 ~L~~~L~~aGF~~V~i~~~~~tt~~eqr~t~w 287 (314)
T TIGR00452 256 ALKNWLEKVGFENFRILDVLKTTPEEQRKTDW 287 (314)
T ss_pred HHHHHHHHCCCeEEEEEeccCCCHHHhhhhhh
Confidence 6778899999987632 2223344655555
Done!