Query 021687
Match_columns 309
No_of_seqs 133 out of 1362
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 07:49:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021687.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021687hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 100.0 4.3E-40 1.5E-44 322.2 19.0 247 2-303 88-346 (429)
2 4hyg_A Putative uncharacterize 21.0 3.8E+02 0.013 24.3 8.3 20 26-45 2-21 (301)
3 3qe7_A Uracil permease; uracil 9.6 2.2E+02 0.0077 26.8 3.9 34 7-40 305-338 (429)
4 1bts_A BAND 3 anion transport 6.9 1.2E+02 0.004 17.3 0.3 23 208-231 3-25 (26)
5 2ifo_A Inovirus; helical virus 4.7 6.4E+02 0.022 16.2 2.9 21 11-31 26-46 (46)
6 3mp7_B Preprotein translocase 4.3 2E+02 0.0069 19.7 0.2 25 202-226 24-48 (61)
7 2knc_A Integrin alpha-IIB; tra 3.5 1.1E+03 0.036 15.6 3.5 9 81-89 33-41 (54)
8 4dve_A Biotin transporter BIOY 3.4 5.3E+02 0.018 21.6 2.2 35 243-281 11-45 (198)
9 2l8s_A Integrin alpha-1; trans 3.3 1.1E+03 0.038 15.5 3.3 9 81-89 30-38 (54)
10 2wwb_B SEC61gamma, protein tra 2.9 3.2E+02 0.011 19.1 0.2 25 202-226 27-51 (68)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=100.00 E-value=4.3e-40 Score=322.15 Aligned_cols=247 Identities=22% Similarity=0.318 Sum_probs=210.7
Q ss_pred hhhHHHHHHHHHHHHHHhhh--hhH-HHHHhhcCccchHHHHHHHhhhhhhhhccCCCC---------CccchHHHHHHH
Q 021687 2 RELQGAIIVGSIFQSILGFT--GLM-SLFLRLINPVVVAPTVAAIGLAFFSYGFPQAGS---------CVEISIPQILLV 69 (309)
Q Consensus 2 ~~~~GavivaGl~~iilg~t--g~~-~~l~~~~Pp~V~g~~l~~IGl~l~~~~~~~~g~---------~~~i~l~~~~lv 69 (309)
|+++|+++++|+++++++.+ +++ +|++|+|||.++|.+++.||+++++.++++.+. ..++.+....++
T Consensus 88 ~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IGl~l~~~~~~~~~~~~~~~~~~~~~~~~la~~tl~ 167 (429)
T 3qe7_A 88 EVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPAEGQTPDSKTIIISITTLA 167 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTSSCBTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHHHHHHHHHHHhccccCCCCccccHHHHHHHHHHHH
Confidence 78999999999999999987 544 799999999999999999999999887765431 112222222222
Q ss_pred HHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHhcCCccCCCCCCCCCCCccchhhhhhhccccccccccccccc
Q 021687 70 LIFALYLRGISVFGHHLFRIYAVPLSVMIIWAYAFFLTAGGAYNYKGCSPDIPSSNILSDACIKHAYTMKHCRTDVSNAW 149 (309)
Q Consensus 70 ~~v~l~~~~~~~~~~g~~~~~aiLigivvg~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 149 (309)
+ +..++++.||++|++++|+|+++||++++.++ .. |++ .+
T Consensus 168 i-----ii~~~~~~kg~~~~~aiLigivvg~~~a~~~G---~~-------------------------------d~~-~v 207 (429)
T 3qe7_A 168 V-----TVLGSVLFRGFLAIIPILIGVLVGYALSFAMG---IV-------------------------------DTT-PI 207 (429)
T ss_dssp H-----HHHHHHSSSTTTTTHHHHHHHHHHHHHHHHHH---HT-------------------------------TSS-HH
T ss_pred H-----HHHHHHHhcccchhhHHHHHHHHHHHHHHHhc---CC-------------------------------Ccc-cc
Confidence 1 22457789999999999999999999999984 33 343 45
Q ss_pred cCCcceeccCCCCCCCceecHHHHHHHHHHHHHHHHHhhhhHHHHHhhhCCCCCCcccccccchhcchHHHHHhhhCCCC
Q 021687 150 RTAAWVRIPYPLQWGIPIFHLRTSLIMIIVSLVASVDSVGTYHTASLLVNSKPPTPRIVSRGIGMEGFCSILAGLWGSGT 229 (309)
Q Consensus 150 ~~~~w~~~P~p~~~g~P~f~~~~il~~~~~~lv~~~es~G~~~a~~~~~~~~~~~~~~i~r~l~~dGlgsilagl~Gt~~ 229 (309)
.+++|+++|. |+.|+||+..+..++++++++++|++|++.++++.+|++..+++++||++.+||++|+++|++|+ +
T Consensus 208 ~~a~~~~lP~---~~~P~f~~~~i~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~adGla~i~~glfGg-~ 283 (429)
T 3qe7_A 208 INAHWFALPT---LYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGS-T 283 (429)
T ss_dssp HHSCSSCCCC---CCCCCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHHHHHHHHHHHHHHTC-C
T ss_pred cccccccccC---CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhcCC-C
Confidence 6678999994 57799999999999999999999999999999999986544556789999999999999999996 9
Q ss_pred CCCccccchhhhhhcccCCchHHHHHHHHHHHHHhhhhHHHHhcccccCCCCCCccCccchHHHHHHHHHHHhh
Q 021687 230 GSSTLTENVHTISITKVASRRAVQLGAVFMIVFSFVGKSVPFWPLYHRHWLPPYCASCGPLLWQLVSQICSILN 303 (309)
Q Consensus 230 ~~t~~sen~g~i~~t~~~sR~~~~~agv~lillg~~pk~~al~~~IP~~~~p~~~~~~~~v~~g~~~~~~~~~~ 303 (309)
|+|+|+||+|+++.||++||++...+|++++++|++||++++++.| | .||++|+...+++++.
T Consensus 284 p~Tt~~en~g~i~~tg~~sr~~~~~ag~~lillgl~pk~~al~~~I-----P------~~vlgg~~l~lfg~i~ 346 (429)
T 3qe7_A 284 PNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMI-----P------LPVMGGVSLLLYGVIG 346 (429)
T ss_dssp CEEECHHHHHHHHHHTBCCHHHHHHHHHHHHHHTCCHHHHHHHTTS-----C------HHHHHHHHHHHHHHHH
T ss_pred CcchHHHhHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHc-----c------HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 7 8999999999887753
No 2
>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A
Probab=21.01 E-value=3.8e+02 Score=24.28 Aligned_cols=20 Identities=0% Similarity=-0.056 Sum_probs=12.2
Q ss_pred HHHhhcCccchHHHHHHHhh
Q 021687 26 LFLRLINPVVVAPTVAAIGL 45 (309)
Q Consensus 26 ~l~~~~Pp~V~g~~l~~IGl 45 (309)
+.|++.|...+..+....++
T Consensus 2 ~~~~~~~~~~~~~~~l~vql 21 (301)
T 4hyg_A 2 QIRDWLPLLGMPLMLLFVQI 21 (301)
T ss_dssp --CCSSTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 35677787777766666554
No 3
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=9.62 E-value=2.2e+02 Score=26.84 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHhhcCccchHHHH
Q 021687 7 AIIVGSIFQSILGFTGLMSLFLRLINPVVVAPTV 40 (309)
Q Consensus 7 avivaGl~~iilg~tg~~~~l~~~~Pp~V~g~~l 40 (309)
+...+|++.+++++.+....+...+|..+.|...
T Consensus 305 ~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~ 338 (429)
T 3qe7_A 305 VIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVS 338 (429)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 3568889999999877678899999988887653
No 4
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=6.92 E-value=1.2e+02 Score=17.29 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=16.1
Q ss_pred ccccchhcchHHHHHhhhCCCCCC
Q 021687 208 VSRGIGMEGFCSILAGLWGSGTGS 231 (309)
Q Consensus 208 i~r~l~~dGlgsilagl~Gt~~~~ 231 (309)
.++.+.+.+++.++-++|+. -|.
T Consensus 3 v~E~i~s~ai~Gi~f~lf~g-QPL 25 (26)
T 1bts_A 3 VSELLISTAVQGILFALLGA-XXX 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHHTTC----
T ss_pred hhHHHHHHHHHHHHHHHHhc-ccC
Confidence 45677888889999899884 664
No 5
>2ifo_A Inovirus; helical virus; NMR {Filamentous phage} SCOP: h.1.4.1
Probab=4.73 E-value=6.4e+02 Score=16.22 Aligned_cols=21 Identities=10% Similarity=0.110 Sum_probs=11.7
Q ss_pred HHHHHHHHhhhhhHHHHHhhc
Q 021687 11 GSIFQSILGFTGLMSLFLRLI 31 (309)
Q Consensus 11 aGl~~iilg~tg~~~~l~~~~ 31 (309)
++.++.++-....++++||.+
T Consensus 26 G~aVLgV~v~i~v~k~IRral 46 (46)
T 2ifo_A 26 GGAVLTVMVGIKVYKWVRRAM 46 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhhC
Confidence 334443433345678888864
No 6
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=4.27 E-value=2e+02 Score=19.67 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=19.6
Q ss_pred CCCcccccccchhcchHHHHHhhhC
Q 021687 202 PPTPRIVSRGIGMEGFCSILAGLWG 226 (309)
Q Consensus 202 ~~~~~~i~r~l~~dGlgsilagl~G 226 (309)
+||+++..+...+.|+|-.+-|+.|
T Consensus 24 KPd~~Ef~~iak~~~iG~~i~G~iG 48 (61)
T 3mp7_B 24 KPNWATYKRAAKITGLGIILIGLIG 48 (61)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677888888888888888776
No 7
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=3.47 E-value=1.1e+03 Score=15.60 Aligned_cols=9 Identities=11% Similarity=0.371 Sum_probs=4.4
Q ss_pred HHhchhhhh
Q 021687 81 VFGHHLFRI 89 (309)
Q Consensus 81 ~~~~g~~~~ 89 (309)
+|.-||+||
T Consensus 33 LwK~GFFkR 41 (54)
T 2knc_A 33 MWKVGFFKR 41 (54)
T ss_dssp HHHHHHTTT
T ss_pred HHHcCcccC
Confidence 345555543
No 8
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=3.42 E-value=5.3e+02 Score=21.64 Aligned_cols=35 Identities=17% Similarity=0.347 Sum_probs=17.9
Q ss_pred hcccCCchHHHHHHHHHHHHHhhhhHHHHhcccccCCCC
Q 021687 243 ITKVASRRAVQLGAVFMIVFSFVGKSVPFWPLYHRHWLP 281 (309)
Q Consensus 243 ~t~~~sR~~~~~agv~lillg~~pk~~al~~~IP~~~~p 281 (309)
+|++.+-|-....+++..++.... .+..||.+..|
T Consensus 11 m~~~~k~r~l~~~alfaAliavla----~i~~Ipip~~p 45 (198)
T 4dve_A 11 MTNNQKVKTLTYSAFMTAFIIILG----FLPGIPIGFIP 45 (198)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHT----TSCCBCCSSSS
T ss_pred hhccHHHHHHHHHHHHHHHHHHHH----HhccCCCCCCC
Confidence 344444444555555554443332 44567777655
No 9
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=3.29 E-value=1.1e+03 Score=15.55 Aligned_cols=9 Identities=11% Similarity=0.372 Sum_probs=4.2
Q ss_pred HHhchhhhh
Q 021687 81 VFGHHLFRI 89 (309)
Q Consensus 81 ~~~~g~~~~ 89 (309)
+|.-||+||
T Consensus 30 LwK~GFFKR 38 (54)
T 2l8s_A 30 LWKIGFFKR 38 (54)
T ss_dssp HHHHHHTTS
T ss_pred HHHcCcccC
Confidence 344455443
No 10
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=2.93 E-value=3.2e+02 Score=19.09 Aligned_cols=25 Identities=12% Similarity=0.147 Sum_probs=20.6
Q ss_pred CCCcccccccchhcchHHHHHhhhC
Q 021687 202 PPTPRIVSRGIGMEGFCSILAGLWG 226 (309)
Q Consensus 202 ~~~~~~i~r~l~~dGlgsilagl~G 226 (309)
+||+++..+...+.|+|-.+-|+.|
T Consensus 27 KPdr~Ef~~iak~~~iG~~i~G~IG 51 (68)
T 2wwb_B 27 KPDRKEFQKIAMATAIGFAIMGFIG 51 (68)
T ss_dssp CCCTHHHHHHHHHSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778899999999998888877
Done!