Query 021687
Match_columns 309
No_of_seqs 133 out of 1362
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 07:49:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021687.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021687hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zs4a1 a.35.1.9 (A:4-81) Regu 10.5 71 0.0052 21.2 2.2 19 79-97 37-55 (78)
2 d1q90g_ f.23.26.1 (G:) PetG su 2.8 3.9E+02 0.028 14.1 1.8 7 260-266 9-15 (30)
3 d2e74e1 f.23.24.1 (E:1-32) Pet 2.5 5E+02 0.036 13.5 2.5 14 91-104 13-26 (32)
4 d1xrda1 f.3.1.1 (A:1-52) Light 2.3 5.9E+02 0.043 15.2 2.5 18 249-266 11-28 (52)
5 d2nr5a1 a.25.6.1 (A:1-64) Hypo 1.3 9.2E+02 0.067 14.2 2.2 17 186-202 17-33 (64)
6 d1s2xa_ a.47.3.1 (A:) Cag-Z {H 1.3 6.5E+02 0.047 17.7 1.6 29 273-308 130-159 (180)
7 d1zeea1 a.266.1.2 (A:6-392) Hy 1.2 1.9E+03 0.14 17.9 4.8 48 183-231 71-118 (387)
8 d1rh5b_ f.23.28.1 (B:) Preprot 1.1 1.3E+03 0.095 13.6 3.8 21 3-23 22-42 (56)
9 d2fo1d1 a.137.14.1 (D:52-114) 0.9 7.2E+02 0.053 15.0 0.5 7 300-306 37-43 (63)
10 d1irqa_ a.43.1.4 (A:) Omega tr 0.8 1.1E+03 0.077 13.3 1.2 11 22-32 35-45 (48)
No 1
>d1zs4a1 a.35.1.9 (A:4-81) Regulatory protein cII {Bacteriophage lambda [TaxId: 10710]}
Probab=10.47 E-value=71 Score=21.22 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=16.1
Q ss_pred HHHHhchhhhhhHHHHHHH
Q 021687 79 ISVFGHHLFRIYAVPLSVM 97 (309)
Q Consensus 79 ~~~~~~g~~~~~aiLigiv 97 (309)
+++|..+|+...+++++++
T Consensus 37 iSRwK~~f~~q~smlLAvL 55 (78)
T d1zs4a1 37 ISRWKRDWIPKFSMLLAVL 55 (78)
T ss_dssp HHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHH
Confidence 4789999999999988765
No 2
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.76 E-value=3.9e+02 Score=14.05 Aligned_cols=7 Identities=43% Similarity=0.648 Sum_probs=4.2
Q ss_pred HHHHhhh
Q 021687 260 IVFSFVG 266 (309)
Q Consensus 260 illg~~p 266 (309)
+++|+.|
T Consensus 9 ivlGlip 15 (30)
T d1q90g_ 9 IVLGLVP 15 (30)
T ss_dssp HHHHHHH
T ss_pred HHHhhHH
Confidence 4566666
No 3
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.47 E-value=5e+02 Score=13.51 Aligned_cols=14 Identities=14% Similarity=0.233 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHH
Q 021687 91 AVPLSVMIIWAYAF 104 (309)
Q Consensus 91 aiLigivvg~~~a~ 104 (309)
+.+.|+.+|.+.+.
T Consensus 13 alffgiavgiifai 26 (32)
T d2e74e1 13 ALFFGIAVGIIFAI 26 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhheeeE
Confidence 45666666666553
No 4
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=2.27 E-value=5.9e+02 Score=15.21 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=12.9
Q ss_pred chHHHHHHHHHHHHHhhh
Q 021687 249 RRAVQLGAVFMIVFSFVG 266 (309)
Q Consensus 249 R~~~~~agv~lillg~~p 266 (309)
||+.+.-++++.++++.=
T Consensus 11 Rr~lva~~~fL~~LAl~I 28 (52)
T d1xrda1 11 RQALVGLATFLFVLALLI 28 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677777777777776654
No 5
>d2nr5a1 a.25.6.1 (A:1-64) Hypothetical protein SO2669 {Shewanella oneidensis [TaxId: 70863]}
Probab=1.34 E-value=9.2e+02 Score=14.17 Aligned_cols=17 Identities=12% Similarity=0.333 Sum_probs=14.3
Q ss_pred HhhhhHHHHHhhhCCCC
Q 021687 186 DSVGTYHTASLLVNSKP 202 (309)
Q Consensus 186 es~G~~~a~~~~~~~~~ 202 (309)
|..|.+.++-+.+|.++
T Consensus 17 ealgklkairqlcgaed 33 (64)
T d2nr5a1 17 EALGKLKAIRQLCGAED 33 (64)
T ss_dssp HHHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHHHhCCcc
Confidence 78999999999998543
No 6
>d1s2xa_ a.47.3.1 (A:) Cag-Z {Helicobacter pylori [TaxId: 210]}
Probab=1.32 E-value=6.5e+02 Score=17.74 Aligned_cols=29 Identities=28% Similarity=0.563 Sum_probs=19.2
Q ss_pred cccccCCCCCCccCccchHHH-HHHHHHHHhhhhhcC
Q 021687 273 PLYHRHWLPPYCASCGPLLWQ-LVSQICSILNQQAFG 308 (309)
Q Consensus 273 ~~IP~~~~p~~~~~~~~v~~g-~~~~~~~~~~~~~~~ 308 (309)
+.+|++++| |.+-| ++-+.+-++|-..||
T Consensus 130 sylpreylp-------pfidgnmmgvafqilgiddfg 159 (180)
T d1s2xa_ 130 SYLPREYLP-------PFIDGNMMGVAFQILGIDDFG 159 (180)
T ss_dssp TTSCGGGCC-------TTCCHHHHHHHHHHTTHHHHH
T ss_pred HhCcHhhCC-------CccCCccceeeeeeecchhHh
Confidence 568999999 55543 445566677766665
No 7
>d1zeea1 a.266.1.2 (A:6-392) Hypothetical protein SO4414 {Shewanella oneidensis [TaxId: 70863]}
Probab=1.17 E-value=1.9e+03 Score=17.92 Aligned_cols=48 Identities=19% Similarity=0.169 Sum_probs=34.8
Q ss_pred HHHHhhhhHHHHHhhhCCCCCCcccccccchhcchHHHHHhhhCCCCCC
Q 021687 183 ASVDSVGTYHTASLLVNSKPPTPRIVSRGIGMEGFCSILAGLWGSGTGS 231 (309)
Q Consensus 183 ~~~es~G~~~a~~~~~~~~~~~~~~i~r~l~~dGlgsilagl~Gt~~~~ 231 (309)
+...++|-+++.+|.-+-.++.++......-+.+++-=+++-.|. +|=
T Consensus 71 ~llgnvg~ym~acrrh~i~ep~re~~~p~~eas~la~~~~as~gv-~pr 118 (387)
T d1zeea1 71 DLLGNVGLYMAACRRHEITEPTRETTSPLLEASALAMHIGASIGV-TPR 118 (387)
T ss_dssp HHHHHHHHHHHHHHHTTSSCTTTCSSCSCHHHHHHHHHHHHHHTS-CSS
T ss_pred HHHhhhHHHHHHHHhccCCCccccccCchhhhHHHHHHHHHhcCC-Cch
Confidence 345788888888887663333443456777888999999999996 773
No 8
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=1.08 E-value=1.3e+03 Score=13.62 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHHHhhhhh
Q 021687 3 ELQGAIIVGSIFQSILGFTGL 23 (309)
Q Consensus 3 ~~~GavivaGl~~iilg~tg~ 23 (309)
|-.-...++|+=++++|+.|+
T Consensus 22 Ef~~ia~v~~iG~~i~G~IGf 42 (56)
T d1rh5b_ 22 EYLAVAKVTALGISLLGIIGY 42 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445666777777776554
No 9
>d2fo1d1 a.137.14.1 (D:52-114) Abnormal cell lineage protein 3, Lag-3 {Caenorhabditis elegans [TaxId: 6239]}
Probab=0.87 E-value=7.2e+02 Score=14.97 Aligned_cols=7 Identities=57% Similarity=0.563 Sum_probs=0.0
Q ss_pred HHhhhhh
Q 021687 300 SILNQQA 306 (309)
Q Consensus 300 ~~~~~~~ 306 (309)
+|.||||
T Consensus 37 ~i~~qra 43 (63)
T d2fo1d1 37 MIANQRA 43 (63)
T ss_dssp HHHHHHH
T ss_pred HHHhHHH
No 10
>d1irqa_ a.43.1.4 (A:) Omega transcriptional repressor {Streptococcus pyogenes [TaxId: 1314]}
Probab=0.83 E-value=1.1e+03 Score=13.26 Aligned_cols=11 Identities=9% Similarity=0.187 Sum_probs=0.0
Q ss_pred hhHHHHHhhcC
Q 021687 22 GLMSLFLRLIN 32 (309)
Q Consensus 22 g~~~~l~~~~P 32 (309)
.++++++++.|
T Consensus 35 ~l~~~~~~~lp 45 (48)
T d1irqa_ 35 ALEEYIRKYLP 45 (48)
T ss_dssp HHHHHHHHHST
T ss_pred HHHHHHHHhCC
Done!