BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021688
(309 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AW6|A Chain A, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 (Face1)
pdb|4AW6|B Chain B, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 (Face1)
pdb|4AW6|D Chain D, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 (Face1)
pdb|4AW6|E Chain E, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 (Face1)
Length = 482
Score = 307 bits (786), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 164/339 (48%), Positives = 222/339 (65%), Gaps = 40/339 (11%)
Query: 2 LWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQK 61
L+S L LP+SLY+TFVIE +HGFN+QT+ F +D IK ++ + P+ S ++ I++
Sbjct: 132 LFSALAGLPWSLYNTFVIEEKHGFNQQTLGFFMKDAIKKFVVTQCILLPVSSLLLYIIKI 191
Query: 62 GGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKK 121
GG Y IY W F V+SLV++T+Y IAPLF+KFTPLPEG+L+E+IE +A S+ FPL K
Sbjct: 192 GGDYFFIYAWLFTLVVSLVLVTIYADYIAPLFDKFTPLPEGKLKEEIEVMAKSIDFPLTK 251
Query: 122 LFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQ------------------------- 156
++VV+GS RSSHSNAY YGFFKNKRIVL+DTL+++
Sbjct: 252 VYVVEGSKRSSHSNAYFYGFFKNKRIVLFDTLLEEYSVLNKDIQEDSGMEPRNEEEGNSE 311
Query: 157 ------------CKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNST 204
CKN EE++AV+ HELGHWKL HT+ + I Q+ + L F + ++
Sbjct: 312 EIKAKVKNKKQGCKN-EEVLAVLGHELGHWKLGHTVKNIIISQMNSFLCFFLFAVLIGRK 370
Query: 205 DLFRSFGF-DTQPVLIG-LIIFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKLGYASA 262
+LF +FGF D+QP LIG LIIFQ P ++SF L ++SR FEFQADAFAKKLG A
Sbjct: 371 ELFAAFGFYDSQPTLIGLLIIFQFIFSPYNEVLSFCLTVLSRRFEFQADAFAKKLGKAKD 430
Query: 263 LRAGLVKLQEENLSAMNTDPWYSAYHYSHPPLVERLAAI 301
L + L+KL ++NL +D +S +HYSHPPL+ERL A+
Sbjct: 431 LYSALIKLNKDNLGFPVSDWLFSMWHYSHPPLLERLQAL 469
>pdb|2YPT|A Chain A, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 Mutant (E336a) In Complex With
A Synthetic Csim Tetrapeptide From The C-Terminus Of
Prelamin A
pdb|2YPT|B Chain B, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 Mutant (E336a) In Complex With
A Synthetic Csim Tetrapeptide From The C-Terminus Of
Prelamin A
pdb|2YPT|D Chain D, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 Mutant (E336a) In Complex With
A Synthetic Csim Tetrapeptide From The C-Terminus Of
Prelamin A
pdb|2YPT|E Chain E, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 Mutant (E336a) In Complex With
A Synthetic Csim Tetrapeptide From The C-Terminus Of
Prelamin A
Length = 482
Score = 305 bits (781), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 163/339 (48%), Positives = 221/339 (65%), Gaps = 40/339 (11%)
Query: 2 LWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQK 61
L+S L LP+SLY+TFVIE +HGFN+QT+ F +D IK ++ + P+ S ++ I++
Sbjct: 132 LFSALAGLPWSLYNTFVIEEKHGFNQQTLGFFMKDAIKKFVVTQCILLPVSSLLLYIIKI 191
Query: 62 GGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKK 121
GG Y IY W F V+SLV++T+Y IAPLF+KFTPLPEG+L+E+IE +A S+ FPL K
Sbjct: 192 GGDYFFIYAWLFTLVVSLVLVTIYADYIAPLFDKFTPLPEGKLKEEIEVMAKSIDFPLTK 251
Query: 122 LFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQ------------------------- 156
++VV+GS RSSHSNAY YGFFKNKRIVL+DTL+++
Sbjct: 252 VYVVEGSKRSSHSNAYFYGFFKNKRIVLFDTLLEEYSVLNKDIQEDSGMEPRNEEEGNSE 311
Query: 157 ------------CKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNST 204
CKN EE++AV+ H LGHWKL HT+ + I Q+ + L F + ++
Sbjct: 312 EIKAKVKNKKQGCKN-EEVLAVLGHALGHWKLGHTVKNIIISQMNSFLCFFLFAVLIGRK 370
Query: 205 DLFRSFGF-DTQPVLIG-LIIFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKLGYASA 262
+LF +FGF D+QP LIG LIIFQ P ++SF L ++SR FEFQADAFAKKLG A
Sbjct: 371 ELFAAFGFYDSQPTLIGLLIIFQFIFSPYNEVLSFCLTVLSRRFEFQADAFAKKLGKAKD 430
Query: 263 LRAGLVKLQEENLSAMNTDPWYSAYHYSHPPLVERLAAI 301
L + L+KL ++NL +D +S +HYSHPPL+ERL A+
Sbjct: 431 LYSALIKLNKDNLGFPVSDWLFSMWHYSHPPLLERLQAL 469
>pdb|4IL3|A Chain A, Crystal Structure Of S. Mikatae Ste24p
pdb|4IL3|B Chain B, Crystal Structure Of S. Mikatae Ste24p
Length = 461
Score = 285 bits (730), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 149/322 (46%), Positives = 204/322 (63%), Gaps = 17/322 (5%)
Query: 4 SQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGG 63
S L DLP S YS FV+E + GFNK T+ L+ DMIK + LA +G PI+ + I K
Sbjct: 132 STLVDLPLSYYSHFVLEEKFGFNKLTVKLWITDMIKSLTLAYAIGGPILYLFLKIFDKFP 191
Query: 64 PYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLF 123
Y+ F+FV+ ++ MT+ PV I PLFNKFTPL +GEL++ IE LA + FPL K+F
Sbjct: 192 TDFLWYIMVFLFVVQILAMTIIPVFIMPLFNKFTPLEDGELKKSIESLADRVGFPLDKIF 251
Query: 124 VVDGSTRSSHSNAYMYGF-FKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYS 182
V+DGS RSSHSNAY G F +KRIVL+DTL+ DE I AV+AHE+GHW+ NH +
Sbjct: 252 VIDGSKRSSHSNAYFTGLPFTSKRIVLFDTLVNSNSTDE-ITAVLAHEIGHWQKNHIVNM 310
Query: 183 FIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQ---------------PVLIGLIIFQHT 227
I Q+ T L F +T + ++ + +FGF + P++IG ++F
Sbjct: 311 VIFSQLHTFLIFSLFTSIYRNSSFYNTFGFFVEKSSSGFVDPVITKEFPIIIGFMLFNDL 370
Query: 228 VIPIQHLVSFGLNLVSRSFEFQADAFAKKLGYASALRAGLVKLQEENLSAMNTDPWYSAY 287
+ P++ + F ++L+SR+ E+QADA+AKKLGY L L+ LQ +NLS MN DP YS+Y
Sbjct: 371 LTPLECAMQFIMSLISRTHEYQADAYAKKLGYKQNLCRALIDLQIKNLSTMNVDPLYSSY 430
Query: 288 HYSHPPLVERLAAIDEPDKKEK 309
HYSHP L ERL A+D +K+K
Sbjct: 431 HYSHPTLAERLTALDYVSEKKK 452
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 29/53 (54%)
Query: 115 LKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVI 167
+ F ++ DG +++ + A +GF + +VL + L + +N E++AV+
Sbjct: 214 VDFSRQRALAADGRSKAFGAGADGFGFSEGVTLVLLERLSEARRNGHEVLAVV 266
>pdb|1IWP|A Chain A, Glycerol Dehydratase-Cyanocobalamin Complex Of Klebsiella
Pneumoniae
pdb|1IWP|L Chain L, Glycerol Dehydratase-Cyanocobalamin Complex Of Klebsiella
Pneumoniae
pdb|1MMF|A Chain A, Crystal Structure Of Substrate Free Form Of Glycerol
Dehydratase
pdb|1MMF|L Chain L, Crystal Structure Of Substrate Free Form Of Glycerol
Dehydratase
Length = 555
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 68/165 (41%), Gaps = 23/165 (13%)
Query: 146 RIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTD 205
R VL + LI D E+ + H + T + + + T F GY+ V N +
Sbjct: 315 RAVLAENLIASML-DLEVASANDQTFSHSDIRRTARTLMQMLPGTDFIFSGYSAVPNYDN 373
Query: 206 LFRSFGFDTQPVLIGLIIFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKLGYASALRA 265
+F FD + + ++ +V GL V+ +A+ A + A A++A
Sbjct: 374 MFAGSNFDAED------FDDYNILQRDLMVDGGLRPVT-----EAETIAIRQKAARAIQA 422
Query: 266 -----GLVKLQEENLSAMNTDPWYSAYHYSHPP--LVERLAAIDE 303
GL + +E + A Y+ PP +VE L+A++E
Sbjct: 423 VFRELGLPPIADEEVEAAT----YAHGSNEMPPRNVVEDLSAVEE 463
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13)
pdb|4FYR|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Bestatin
pdb|4FYS|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Angiotensin
Iv
pdb|4FYT|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Amastatin
Length = 903
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 148 VLYDTLIQQCKNDEEIVAVIAHELGH 173
+L+D L N E +V VIAHEL H
Sbjct: 303 LLFDPLSSSSSNKERVVTVIAHELAH 328
>pdb|2HQD|A Chain A, Conformation Of The Acrb Multidrug Efflux Pump In Mutants
Of The Putative Proton Relay Pathway
Length = 1053
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 9/53 (16%)
Query: 9 LPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQK 61
+P L TF + A GF+ T+ +F GM+LAI L +V A I++V+
Sbjct: 372 VPVVLLGTFAVLAAFGFSINTLTMF------GMVLAIGL---LVDAAIVVVEN 415
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 145 KRIVLYDTLIQQCKNDEEIVAVIAHELGH 173
+ +L+D N E +V VIAHEL H
Sbjct: 341 ENALLFDPQSSSISNKERVVTVIAHELAH 369
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 145 KRIVLYDTLIQQCKNDEEIVAVIAHELGH 173
+ +L+D N E +V VIAHEL H
Sbjct: 297 ENALLFDPQSSSISNKERVVTVIAHELAH 325
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 145 KRIVLYDTLIQQCKNDEEIVAVIAHELGH 173
+ +L+D N E +V VIAHEL H
Sbjct: 298 ENALLFDPQSSSISNKERVVTVIAHELAH 326
>pdb|2YVS|A Chain A, Crystal Structure Of Glycolate Oxidase Subunit Glce From
Thermus Thermophilus Hb8
pdb|2YVS|B Chain B, Crystal Structure Of Glycolate Oxidase Subunit Glce From
Thermus Thermophilus Hb8
Length = 219
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 279 NTDPWYSAYHYSHPPLVER 297
PW AYH+ HP VER
Sbjct: 144 EEGPWLYAYHFGHPKEVER 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.141 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,897,706
Number of Sequences: 62578
Number of extensions: 344951
Number of successful extensions: 930
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 913
Number of HSP's gapped (non-prelim): 12
length of query: 309
length of database: 14,973,337
effective HSP length: 99
effective length of query: 210
effective length of database: 8,778,115
effective search space: 1843404150
effective search space used: 1843404150
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)