Query 021688
Match_columns 309
No_of_seqs 259 out of 1894
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 04:54:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021688.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021688hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2719 Metalloprotease [Gener 100.0 6.4E-64 1.4E-68 447.4 33.7 307 2-309 117-428 (428)
2 PRK03001 M48 family peptidase; 100.0 2E-43 4.3E-48 312.5 29.6 253 36-306 2-279 (283)
3 PRK03982 heat shock protein Ht 100.0 1.8E-43 3.9E-48 313.5 29.1 259 35-307 2-283 (288)
4 PRK01265 heat shock protein Ht 100.0 1.2E-41 2.6E-46 301.8 30.6 228 72-306 49-323 (324)
5 PRK03072 heat shock protein Ht 100.0 6E-40 1.3E-44 289.9 29.9 254 36-306 6-284 (288)
6 PRK02391 heat shock protein Ht 100.0 9.8E-40 2.1E-44 288.8 29.4 228 69-306 41-291 (296)
7 PRK02870 heat shock protein Ht 100.0 2.1E-38 4.5E-43 282.9 30.4 223 69-305 75-335 (336)
8 PRK04897 heat shock protein Ht 100.0 2.9E-38 6.2E-43 280.7 30.8 225 69-303 45-297 (298)
9 PRK05457 heat shock protein Ht 100.0 9.3E-38 2E-42 274.9 31.1 222 72-304 42-283 (284)
10 PRK01345 heat shock protein Ht 100.0 6.9E-38 1.5E-42 279.6 29.3 225 68-306 31-280 (317)
11 PF01435 Peptidase_M48: Peptid 100.0 7.7E-34 1.7E-38 244.5 5.9 206 79-300 8-226 (226)
12 COG0501 HtpX Zn-dependent prot 100.0 1.7E-29 3.8E-34 226.7 28.1 224 70-308 59-300 (302)
13 COG4783 Putative Zn-dependent 99.9 1.7E-21 3.7E-26 176.3 19.0 190 90-308 58-263 (484)
14 PF05569 Peptidase_M56: BlaR1 99.8 4.8E-18 1E-22 152.2 20.0 165 92-301 131-299 (299)
15 KOG2661 Peptidase family M48 [ 99.8 2.2E-18 4.8E-23 148.3 14.7 151 121-305 240-396 (424)
16 COG4784 Putative Zn-dependent 99.7 3.3E-16 7.2E-21 135.6 14.4 175 99-303 61-249 (479)
17 COG4219 MecR1 Antirepressor re 99.6 3.8E-13 8.3E-18 116.6 19.2 157 101-304 135-294 (337)
18 PF04228 Zn_peptidase: Putativ 98.2 5.2E-05 1.1E-09 67.1 13.2 73 104-178 99-185 (292)
19 PF10463 Peptidase_U49: Peptid 97.8 5.7E-05 1.2E-09 63.1 6.6 23 160-182 98-120 (206)
20 PF06114 DUF955: Domain of unk 97.6 0.00062 1.3E-08 51.8 9.9 35 144-183 28-62 (122)
21 PRK09672 phage exclusion prote 97.5 0.00021 4.6E-09 62.3 5.9 22 160-181 162-183 (305)
22 PRK04351 hypothetical protein; 97.4 0.00061 1.3E-08 54.3 6.8 70 100-174 2-72 (149)
23 COG2321 Predicted metalloprote 97.0 0.0037 8.1E-08 53.8 8.3 73 106-178 98-182 (295)
24 PF01863 DUF45: Protein of unk 96.9 0.0025 5.3E-08 53.8 6.0 71 103-183 113-184 (205)
25 PF04298 Zn_peptidase_2: Putat 96.8 0.26 5.6E-06 41.7 18.2 88 83-179 15-105 (222)
26 COG1451 Predicted metal-depend 96.7 0.0041 8.9E-08 53.1 6.2 71 103-183 124-195 (223)
27 smart00731 SprT SprT homologue 96.0 0.013 2.7E-07 46.8 5.1 33 144-177 41-73 (146)
28 PF13699 DUF4157: Domain of un 95.9 0.02 4.3E-07 40.4 5.1 62 110-177 9-75 (79)
29 PF10026 DUF2268: Predicted Zn 95.6 0.039 8.5E-07 46.2 6.5 76 103-180 4-82 (195)
30 PF10263 SprT-like: SprT-like 95.5 0.075 1.6E-06 42.7 7.6 32 146-178 44-75 (157)
31 PF13203 DUF2201_N: Putative m 95.0 0.039 8.5E-07 49.2 4.9 40 144-184 42-81 (292)
32 PF04450 BSP: Peptidase of pla 94.6 0.082 1.8E-06 44.5 5.6 47 132-179 61-112 (205)
33 COG3091 SprT Zn-dependent meta 94.1 0.1 2.2E-06 41.1 4.6 68 101-175 4-73 (156)
34 PRK04860 hypothetical protein; 93.7 0.2 4.3E-06 40.5 5.9 33 143-176 44-76 (160)
35 PF12388 Peptidase_M57: Dual-a 92.9 0.2 4.3E-06 42.1 4.9 34 144-180 117-151 (211)
36 PF12725 DUF3810: Protein of u 92.4 0.81 1.8E-05 41.4 8.5 18 159-176 192-209 (318)
37 COG2856 Predicted Zn peptidase 92.1 0.22 4.7E-06 42.2 4.2 31 144-179 58-88 (213)
38 PF02031 Peptidase_M7: Strepto 92.0 0.24 5.2E-06 37.9 3.9 38 133-175 52-89 (132)
39 COG4900 Predicted metallopepti 92.0 0.59 1.3E-05 34.7 5.8 72 102-176 7-93 (133)
40 PF08325 WLM: WLM domain; Int 89.0 1.1 2.3E-05 37.2 5.6 74 104-183 25-102 (186)
41 PRK06926 flagellar motor prote 88.9 16 0.00034 32.3 18.8 35 153-188 120-154 (271)
42 COG2738 Predicted Zn-dependent 88.9 9.4 0.0002 31.6 10.7 67 107-182 45-111 (226)
43 PF00413 Peptidase_M10: Matrix 84.6 0.51 1.1E-05 37.5 1.4 17 159-175 101-117 (154)
44 TIGR00181 pepF oligoendopeptid 84.0 0.7 1.5E-05 45.6 2.4 47 128-180 348-395 (591)
45 PF11990 DUF3487: Protein of u 83.4 18 0.00039 27.7 11.4 78 29-118 22-100 (121)
46 COG3590 PepO Predicted metallo 82.9 0.36 7.8E-06 46.1 -0.1 41 133-175 450-499 (654)
47 cd04279 ZnMc_MMP_like_1 Zinc-d 82.9 0.76 1.6E-05 36.8 1.8 16 160-175 101-116 (156)
48 PF13485 Peptidase_MA_2: Pepti 82.9 1.8 3.9E-05 32.6 3.8 22 159-180 21-42 (128)
49 TIGR02289 M3_not_pepF oligoend 82.8 0.96 2.1E-05 44.2 2.7 47 128-180 306-354 (549)
50 cd04270 ZnMc_TACE_like Zinc-de 81.7 0.9 1.9E-05 39.5 1.9 17 160-176 164-180 (244)
51 COG3864 Uncharacterized protei 81.6 1.3 2.9E-05 39.3 2.8 38 144-182 51-88 (396)
52 cd04268 ZnMc_MMP_like Zinc-dep 80.1 0.94 2E-05 36.4 1.4 31 144-175 72-106 (165)
53 TIGR03750 conj_TIGR03750 conju 79.2 25 0.00053 26.5 11.8 79 29-119 19-97 (111)
54 PF09768 Peptidase_M76: Peptid 78.9 3.8 8.2E-05 33.5 4.5 65 102-176 16-84 (173)
55 cd06459 M3B_Oligoendopeptidase 78.9 2.7 5.8E-05 39.5 4.2 48 128-179 191-238 (427)
56 PF13688 Reprolysin_5: Metallo 77.8 1.1 2.4E-05 37.3 1.1 17 159-175 138-154 (196)
57 COG1164 Oligoendopeptidase F [ 77.4 1.3 2.8E-05 43.7 1.7 45 131-179 352-396 (598)
58 PF01431 Peptidase_M13: Peptid 77.1 2 4.4E-05 36.0 2.6 36 143-179 7-52 (206)
59 PF14247 DUF4344: Domain of un 76.8 8.7 0.00019 32.7 6.3 63 107-174 25-103 (220)
60 PF13582 Reprolysin_3: Metallo 76.7 1.3 2.8E-05 33.8 1.1 12 164-175 108-119 (124)
61 PF01432 Peptidase_M3: Peptida 76.5 2.7 6E-05 40.0 3.6 55 121-177 187-256 (458)
62 PF14891 Peptidase_M91: Effect 76.4 9.2 0.0002 31.2 6.2 16 161-176 101-116 (174)
63 COG3824 Predicted Zn-dependent 75.6 2.4 5.3E-05 32.0 2.3 30 145-175 85-121 (136)
64 PF13574 Reprolysin_2: Metallo 75.1 1.4 3.1E-05 36.0 1.1 14 163-176 111-124 (173)
65 cd04269 ZnMc_adamalysin_II_lik 74.9 1.9 4.1E-05 35.8 1.8 40 133-175 103-143 (194)
66 PF01447 Peptidase_M4: Thermol 74.0 3.9 8.5E-05 32.6 3.3 40 132-175 108-147 (150)
67 cd06455 M3A_TOP Peptidase M3 T 73.8 5.5 0.00012 38.2 4.9 49 128-178 213-278 (472)
68 PRK08456 flagellar motor prote 73.6 62 0.0013 28.3 14.3 71 98-183 71-144 (257)
69 PF06262 DUF1025: Possibl zinc 73.1 5.7 0.00012 29.1 3.7 36 144-179 49-89 (97)
70 cd04278 ZnMc_MMP Zinc-dependen 72.7 2 4.3E-05 34.4 1.4 32 144-175 85-119 (157)
71 COG4324 Predicted aminopeptida 72.1 3.7 8.1E-05 35.6 2.9 36 150-185 182-222 (376)
72 cd06258 Peptidase_M3_like The 71.7 6.2 0.00014 36.2 4.6 47 131-179 112-170 (365)
73 PF01421 Reprolysin: Reprolysi 71.6 2.8 6.2E-05 34.9 2.1 17 159-175 127-143 (199)
74 PF05572 Peptidase_M43: Pregna 71.6 2.1 4.4E-05 34.4 1.2 24 159-182 65-89 (154)
75 TIGR02290 M3_fam_3 oligoendope 71.5 5.2 0.00011 39.5 4.3 42 131-178 347-390 (587)
76 TIGR03793 TOMM_pelo TOMM prope 71.3 23 0.00051 24.7 6.3 54 101-168 16-76 (77)
77 PRK13267 archaemetzincin-like 71.1 14 0.00031 30.4 6.0 54 121-175 73-137 (179)
78 TIGR02414 pepN_proteo aminopep 69.8 8.5 0.00018 39.8 5.4 19 161-179 281-299 (863)
79 cd04267 ZnMc_ADAM_like Zinc-de 69.8 1.8 4E-05 35.8 0.6 16 160-175 130-145 (192)
80 cd06460 M32_Taq Peptidase fami 68.8 7.4 0.00016 36.3 4.3 62 105-178 110-174 (396)
81 PF11694 DUF3290: Protein of u 68.4 59 0.0013 25.9 9.6 26 102-127 79-104 (149)
82 KOG1047 Bifunctional leukotrie 68.1 6.7 0.00014 37.7 3.9 50 120-179 255-304 (613)
83 cd04271 ZnMc_ADAM_fungal Zinc- 67.6 1.9 4.1E-05 37.0 0.2 12 165-176 147-158 (228)
84 PRK08156 type III secretion sy 67.3 1.1E+02 0.0023 28.4 11.4 27 25-51 126-152 (361)
85 cd00203 ZnMc Zinc-dependent me 66.8 2.5 5.4E-05 33.9 0.8 16 160-175 93-108 (167)
86 PF13583 Reprolysin_4: Metallo 66.1 2.8 6.1E-05 35.3 1.0 15 161-176 136-150 (206)
87 COG1377 FlhB Flagellar biosynt 65.9 99 0.0021 28.5 10.7 29 25-53 138-166 (363)
88 PRK14015 pepN aminopeptidase N 65.8 11 0.00024 39.1 5.3 19 162-180 295-313 (875)
89 cd04272 ZnMc_salivary_gland_MP 65.7 3.4 7.4E-05 35.1 1.4 14 162-175 144-157 (220)
90 COG2274 SunT ABC-type bacterio 65.5 24 0.00051 35.8 7.4 53 2-56 233-285 (709)
91 PRK08990 flagellar motor prote 65.2 95 0.0021 27.1 12.4 47 155-202 114-161 (254)
92 PRK09109 motC flagellar motor 64.9 94 0.002 27.0 16.0 47 155-202 117-164 (246)
93 PF01433 Peptidase_M1: Peptida 64.8 4.4 9.6E-05 37.4 2.1 70 104-179 234-311 (390)
94 KOG3314 Ku70-binding protein [ 64.8 19 0.00041 28.9 5.2 39 140-181 71-109 (194)
95 PRK05702 flhB flagellar biosyn 60.9 1.4E+02 0.003 27.6 11.3 29 25-53 138-166 (359)
96 PF08014 DUF1704: Domain of un 60.5 14 0.00031 33.8 4.5 68 99-178 109-181 (349)
97 PF15061 DUF4538: Domain of un 60.2 19 0.0004 23.6 3.7 40 71-118 9-48 (58)
98 PRK12721 secretion system appa 59.5 1.4E+02 0.0031 27.4 11.4 28 25-52 131-158 (349)
99 PRK12482 flagellar motor prote 58.9 1.3E+02 0.0029 26.7 14.3 31 157-188 138-168 (287)
100 PRK12468 flhB flagellar biosyn 58.9 1.5E+02 0.0033 27.6 11.0 26 25-50 138-163 (386)
101 smart00235 ZnMc Zinc-dependent 58.9 4.5 9.9E-05 31.5 0.9 12 164-175 87-98 (140)
102 PF06861 BALF1: BALF1 protein; 58.7 8.6 0.00019 31.0 2.4 25 156-180 125-149 (182)
103 TIGR02412 pepN_strep_liv amino 57.6 20 0.00043 37.1 5.5 66 106-179 230-303 (831)
104 PF02687 FtsX: FtsX-like perme 57.2 73 0.0016 23.2 7.8 44 16-59 29-73 (121)
105 PRK00523 hypothetical protein; 56.9 15 0.00033 25.2 3.0 29 87-119 28-56 (72)
106 COG1054 Predicted sulfurtransf 56.6 25 0.00055 31.3 5.1 43 92-140 9-52 (308)
107 TIGR00328 flhB flagellar biosy 56.5 1.6E+02 0.0035 27.0 11.5 28 25-52 131-158 (347)
108 cd04276 ZnMc_MMP_like_2 Zinc-d 55.6 7.7 0.00017 32.5 1.8 31 145-175 92-128 (197)
109 cd04277 ZnMc_serralysin_like Z 55.6 7.5 0.00016 32.0 1.7 31 145-175 94-125 (186)
110 TIGR02421 QEGLA conserved hypo 55.5 17 0.00036 33.6 4.0 63 99-172 134-197 (366)
111 PRK09108 type III secretion sy 55.5 1.7E+02 0.0037 26.9 11.3 27 25-51 133-159 (353)
112 KOG3624 M13 family peptidase [ 55.0 8.9 0.00019 38.6 2.4 42 132-176 480-531 (687)
113 PRK13109 flhB flagellar biosyn 54.9 1.8E+02 0.0038 26.9 11.5 28 25-52 140-167 (358)
114 PF02163 Peptidase_M50: Peptid 54.9 7.7 0.00017 32.0 1.7 13 163-175 7-19 (192)
115 cd04273 ZnMc_ADAMTS_like Zinc- 53.6 2.7 5.8E-05 35.4 -1.3 13 163-175 140-152 (207)
116 COG3402 Uncharacterized conser 52.9 79 0.0017 25.3 6.9 43 45-87 27-70 (161)
117 cd04327 ZnMc_MMP_like_3 Zinc-d 52.4 9 0.00019 32.0 1.7 16 161-176 90-105 (198)
118 PF14715 FixP_N: N-terminal do 52.4 23 0.00049 22.6 3.2 24 64-87 21-44 (51)
119 cd06456 M3A_DCP_Oligopeptidase 50.8 22 0.00048 33.5 4.3 30 12-41 23-52 (422)
120 cd06161 S2P-M50_SpoIVFB SpoIVF 49.7 10 0.00022 32.0 1.7 14 162-175 37-50 (208)
121 cd05709 S2P-M50 Site-2 proteas 49.6 10 0.00022 30.9 1.7 13 163-175 8-20 (180)
122 TIGR02411 leuko_A4_hydro leuko 49.2 19 0.00042 35.7 3.7 30 147-179 266-295 (601)
123 cd06163 S2P-M50_PDZ_RseP-like 49.0 9.6 0.00021 31.5 1.3 12 164-175 10-21 (182)
124 KOG3607 Meltrins, fertilins an 48.6 17 0.00036 36.8 3.1 72 102-176 256-336 (716)
125 COG0308 PepN Aminopeptidase N 48.3 30 0.00066 35.9 5.1 24 160-183 304-327 (859)
126 PF12315 DUF3633: Protein of u 47.0 12 0.00026 31.4 1.6 21 155-176 86-106 (212)
127 COG3763 Uncharacterized protei 46.8 29 0.00063 23.6 3.1 34 82-119 22-55 (71)
128 cd06164 S2P-M50_SpoIVFB_CBS Sp 46.4 12 0.00027 32.0 1.7 14 162-175 52-65 (227)
129 PF09471 Peptidase_M64: IgA Pe 46.2 12 0.00027 32.8 1.7 16 159-174 212-227 (264)
130 PF10023 DUF2265: Predicted am 45.8 13 0.00028 33.7 1.8 26 159-184 161-189 (337)
131 PRK09110 flagellar motor prote 44.8 2.3E+02 0.0049 25.2 10.9 26 157-183 138-163 (283)
132 cd06160 S2P-M50_like_2 Unchara 43.3 15 0.00032 30.4 1.7 15 161-175 39-53 (183)
133 PF13829 DUF4191: Domain of un 43.2 2.1E+02 0.0046 24.5 10.9 58 101-171 87-144 (224)
134 PRK08124 flagellar motor prote 42.6 2.3E+02 0.0051 24.8 16.5 47 155-202 118-165 (263)
135 PRK05320 rhodanese superfamily 42.1 37 0.00079 29.7 4.0 55 92-154 7-62 (257)
136 cd06159 S2P-M50_PDZ_Arch Uncha 42.0 15 0.00033 32.2 1.6 14 162-175 117-130 (263)
137 TIGR03296 M6dom_TIGR03296 M6 f 41.9 6.2 0.00013 35.1 -0.9 12 164-175 166-177 (286)
138 COG5504 Predicted Zn-dependent 41.6 64 0.0014 28.0 5.1 30 144-176 124-153 (280)
139 PF13994 PgaD: PgaD-like prote 41.6 1.4E+02 0.0031 23.2 6.9 30 31-60 12-44 (138)
140 PRK01844 hypothetical protein; 41.5 60 0.0013 22.3 4.0 33 83-119 23-55 (72)
141 PRK01415 hypothetical protein; 40.8 40 0.00086 29.3 3.9 43 92-140 9-52 (247)
142 PF05182 Fip1: Fip1 motif; In 39.8 17 0.00038 22.5 1.1 18 22-39 25-42 (45)
143 cd06162 S2P-M50_PDZ_SREBP Ster 39.2 18 0.00039 32.0 1.6 15 162-176 134-148 (277)
144 COG4823 AbiF Abortive infectio 39.1 21 0.00045 31.0 1.9 14 160-173 89-102 (299)
145 TIGR01404 FlhB_rel_III type II 38.6 3.1E+02 0.0068 25.1 12.5 27 25-51 130-156 (342)
146 PRK01844 hypothetical protein; 36.2 46 0.001 22.8 2.8 10 102-111 58-67 (72)
147 COG4972 PilM Tfp pilus assembl 36.0 46 0.001 30.1 3.6 60 101-176 57-116 (354)
148 COG4227 Antirestriction protei 35.5 23 0.00049 30.9 1.5 27 156-182 196-222 (316)
149 KOG1046 Puromycin-sensitive am 35.1 20 0.00043 37.3 1.4 24 160-183 321-344 (882)
150 PF06645 SPC12: Microsomal sig 35.0 1.2E+02 0.0027 21.0 5.0 26 71-99 39-64 (76)
151 PF04138 GtrA: GtrA-like prote 34.7 1.8E+02 0.004 21.3 8.6 55 7-62 34-89 (117)
152 PRK00523 hypothetical protein; 33.5 96 0.0021 21.3 4.0 9 102-110 59-67 (72)
153 PRK12772 bifunctional flagella 33.4 5E+02 0.011 25.9 12.2 27 25-51 394-420 (609)
154 PF03186 CobD_Cbib: CobD/Cbib 33.2 2.7E+02 0.0059 24.8 8.2 45 10-60 23-69 (295)
155 cd04275 ZnMc_pappalysin_like Z 33.0 7.8 0.00017 33.2 -1.6 20 161-180 135-155 (225)
156 PRK11767 SpoVR family protein; 32.2 42 0.00092 32.1 2.9 68 103-174 19-120 (498)
157 cd06158 S2P-M50_like_1 Unchara 31.9 28 0.00062 28.6 1.6 13 163-175 9-21 (181)
158 PRK06298 type III secretion sy 31.1 4.3E+02 0.0093 24.4 11.9 26 25-50 132-157 (356)
159 PF14521 Aspzincin_M35: Lysine 30.8 1.1E+02 0.0024 24.1 4.8 30 145-174 77-107 (148)
160 TIGR00782 ccoP cytochrome c ox 30.3 51 0.0011 29.2 3.1 25 64-88 27-51 (285)
161 PF13402 M60-like: Peptidase M 30.2 1.9E+02 0.0042 25.6 6.8 40 134-178 191-234 (307)
162 PF15639 Tox-MPTase3: Metallop 30.1 95 0.0021 23.9 3.9 57 119-179 49-116 (135)
163 cd04283 ZnMc_hatching_enzyme Z 30.1 24 0.00052 29.1 0.9 12 164-175 78-89 (182)
164 PF06582 DUF1136: Repeat of un 30.1 29 0.00062 19.1 0.9 18 289-306 5-22 (28)
165 PF10112 Halogen_Hydrol: 5-bro 30.0 3.2E+02 0.0069 22.6 8.1 10 171-180 113-122 (199)
166 PF10460 Peptidase_M30: Peptid 29.7 37 0.0008 31.3 2.1 19 159-177 135-153 (366)
167 cd04281 ZnMc_BMP1_TLD Zinc-dep 29.5 24 0.00052 29.6 0.8 13 164-176 88-100 (200)
168 PF01400 Astacin: Astacin (Pep 28.9 33 0.0007 28.5 1.5 13 163-175 79-91 (191)
169 PHA02456 zinc metallopeptidase 28.8 29 0.00062 26.0 1.0 14 163-176 79-92 (141)
170 PF14079 DUF4260: Domain of un 28.8 1.5E+02 0.0032 22.4 4.7 36 59-94 19-55 (113)
171 PF11391 DUF2798: Protein of u 28.6 1.7E+02 0.0037 19.0 6.0 30 22-55 19-48 (60)
172 COG3930 Uncharacterized protei 27.8 72 0.0016 29.1 3.4 70 97-173 183-256 (434)
173 PRK12438 hypothetical protein; 27.3 6.1E+02 0.013 27.0 10.3 58 65-124 284-345 (991)
174 PF02102 Peptidase_M35: Deuter 27.2 1.8E+02 0.0039 26.9 6.0 72 103-175 229-309 (359)
175 PF14147 Spore_YhaL: Sporulati 27.1 79 0.0017 20.1 2.6 17 66-82 3-19 (52)
176 cd06461 M2_ACE Peptidase famil 26.9 77 0.0017 30.5 3.7 65 104-175 186-259 (477)
177 PF02128 Peptidase_M36: Fungal 26.6 23 0.00051 32.6 0.2 49 131-180 147-202 (378)
178 PF10777 YlaC: Inner membrane 26.4 2.6E+02 0.0057 22.2 5.9 22 43-64 40-61 (155)
179 PF09973 DUF2208: Predicted me 26.2 4.3E+02 0.0092 22.8 7.9 22 61-82 20-41 (233)
180 PF05548 Peptidase_M11: Gameto 25.8 33 0.00072 31.0 1.1 11 165-175 152-162 (314)
181 PF12651 RHH_3: Ribbon-helix-h 25.6 69 0.0015 19.5 2.1 19 101-119 10-28 (44)
182 PF11085 YqhR: Conserved membr 25.5 3.8E+02 0.0081 21.9 7.7 24 90-113 117-140 (173)
183 PRK12773 flhB flagellar biosyn 25.0 7.1E+02 0.015 24.9 11.3 26 26-51 430-455 (646)
184 cd04280 ZnMc_astacin_like Zinc 24.7 32 0.00069 28.2 0.7 13 164-176 75-87 (180)
185 PF01457 Peptidase_M8: Leishma 24.6 61 0.0013 31.5 2.7 33 145-178 193-225 (521)
186 TIGR00054 RIP metalloprotease 24.6 36 0.00077 32.1 1.1 12 164-175 15-26 (420)
187 PF10462 Peptidase_M66: Peptid 24.3 41 0.00088 30.2 1.3 17 160-176 190-206 (305)
188 cd06457 M3A_MIP Peptidase M3 m 24.0 35 0.00076 32.6 0.9 20 159-179 245-264 (458)
189 COG4512 AgrB Membrane protein 23.6 2.1E+02 0.0045 23.5 5.0 23 90-112 124-146 (198)
190 KOG3714 Meprin A metalloprotea 23.5 35 0.00075 32.1 0.7 13 164-176 160-172 (411)
191 PF02074 Peptidase_M32: Carbox 23.2 1.6E+02 0.0034 28.6 5.1 61 106-175 211-271 (494)
192 KOG3658 Tumor necrosis factor- 23.0 24 0.00053 34.9 -0.4 18 155-173 385-402 (764)
193 PF03706 UPF0104: Uncharacteri 23.0 4.9E+02 0.011 22.4 8.2 26 12-37 83-109 (294)
194 TIGR03818 MotA1 flagellar moto 22.9 5.4E+02 0.012 22.8 13.2 28 159-186 139-166 (282)
195 PF03820 Mtc: Tricarboxylate c 22.8 4.2E+02 0.0091 23.9 7.4 101 23-124 201-304 (308)
196 KOG1565 Gelatinase A and relat 22.0 38 0.00082 32.5 0.7 16 161-176 209-224 (469)
197 PF01402 RHH_1: Ribbon-helix-h 21.9 69 0.0015 18.5 1.6 18 101-118 7-24 (39)
198 COG3227 LasB Zinc metalloprote 21.3 27 0.00059 33.1 -0.4 40 132-178 310-352 (507)
199 COG3088 CcmH Uncharacterized p 21.3 2.7E+02 0.0059 22.2 5.2 77 97-183 27-103 (153)
200 cd04282 ZnMc_meprin Zinc-depen 21.1 42 0.00092 28.8 0.7 13 164-176 121-133 (230)
201 PRK10911 oligopeptidase A; Pro 20.4 60 0.0013 32.8 1.7 19 159-178 460-478 (680)
202 PF08219 TOM13: Outer membrane 20.3 58 0.0013 22.6 1.1 12 166-177 55-66 (77)
203 PF04293 SpoVR: SpoVR like pro 20.1 1.1E+02 0.0024 28.9 3.3 28 146-174 78-110 (426)
No 1
>KOG2719 consensus Metalloprotease [General function prediction only]
Probab=100.00 E-value=6.4e-64 Score=447.36 Aligned_cols=307 Identities=56% Similarity=0.945 Sum_probs=295.3
Q ss_pred hhHHhhhccHHHhhhchhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHH
Q 021688 2 LWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVM 81 (309)
Q Consensus 2 ~~~~~~~lp~~~y~~~~l~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 81 (309)
++.+++.||+++|++|++|++||+|++|++.|++|.+++.++++++..|+.+++.+++...|+.+.+++|++.++++++.
T Consensus 117 ~~~~l~~LP~~iys~fvie~~~gfnk~t~~~~~~d~lk~~~v~~~l~~Pi~~~iv~i~~~~g~yF~i~~w~f~~v~~l~l 196 (428)
T KOG2719|consen 117 IYSTLLDLPSSIYSTFVLEEKHGFNKQTLSLFIIDGLKSLLVGVVLTIPIVAAIVMILKKFGPYFFIYLWLFYFVLSLLL 196 (428)
T ss_pred HHHHHHhccHHHHHHHHHHhhcCCCcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhHhhhhhccccccCCCchHHHHHHHHHHHcCCCCCceEEEeCCCCCCCccEEEeccCCCceeeecHhHHh---hcC
Q 021688 82 MTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQ---QCK 158 (309)
Q Consensus 82 ~~~~p~~i~~l~~~~~pl~~~~L~~~i~~l~~~~g~~~~~i~v~~~~~~s~~~NA~~~G~~~~~~I~l~~~ll~---~l~ 158 (309)
..++|..+.|+++|++|++++++++.+++++++.|+|..+++++++|+|+.+.||++.|+++.+||+++|+++. .+
T Consensus 197 ~ti~p~~i~P~f~K~~PLe~g~l~~~Ie~la~s~gfp~~k~~vi~~s~rs~hsNAyfyG~~~~KRIvIyDtLl~~~~~~- 275 (428)
T KOG2719|consen 197 LTIYPGFIAPLFGKFTPLEEGDLKEKIERLADSVGFPLSKYRVIDGSKRSSHSNAYFYGLCKNKRIVIYDTLLLEEEHL- 275 (428)
T ss_pred HHHHHHhhhhhhcCCCCCCCCchHHHHHHHHHhcCCCceEEEEEecCCCCCCCCeeeeeccccceEEEehhhhhhhhcc-
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999983 24
Q ss_pred ChhHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHhcChhhHhhcCCCC-CchHHHHH-HHHHHHHHHHHHHH
Q 021688 159 NDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDT-QPVLIGLI-IFQHTVIPIQHLVS 236 (309)
Q Consensus 159 ~~~El~aVlaHElgH~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~-~~~~~~~~~~~~~~ 236 (309)
++||+.||+|||+||++++|..++..+..+..++.+++++.+..++.+|.++|+.. .|..+|++ ++...++|++.+.+
T Consensus 276 ~~eel~AVl~HELGHW~~~H~~K~~ii~~~~l~l~~llF~~~~~~~~ly~a~Gf~~~~P~~ig~livf~~~l~py~~l~~ 355 (428)
T KOG2719|consen 276 NNEELVAVLAHELGHWKLNHVLKNIIIMQIHLFLEFLLFGFLYRNPKLYAAFGFIDEQPSLIGFLIVFQFVLAPYRALLN 355 (428)
T ss_pred ccHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHcCcchheeecCCCCCcchhHHHHHHHHHHHhHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999966 89999987 77788999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCCCCCCchhhhhhhcCCCCHHHHHHHccccccccC
Q 021688 237 FGLNLVSRSFEFQADAFAKKLGYASALRAGLVKLQEENLSAMNTDPWYSAYHYSHPPLVERLAAIDEPDKKEK 309 (309)
Q Consensus 237 ~~~~~~sR~~E~~AD~~a~~~g~~~~l~~aL~~l~~~~~~~~~~~~~~~~~~~tHP~~~~Ri~~l~~~~~~~~ 309 (309)
+.++..||+.||+||++|.++|+++++.+||.|+..+|.+.+.+|++|+.|+++||++.|||++++..+.|+|
T Consensus 356 ~~~n~~sR~fEyqAD~fA~klGYg~~L~~AL~KL~~dnlsf~~~D~LYs~~~~~HPtvleRl~~l~~~~~k~~ 428 (428)
T KOG2719|consen 356 FLMNLISRRFEYQADAFAKKLGYGKDLRQALIKLFVDNLSFPVSDPLYSAWHHLHPTVLERLDALDYLSEKKK 428 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHhhhhcCCCCCcHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887765
No 2
>PRK03001 M48 family peptidase; Provisional
Probab=100.00 E-value=2e-43 Score=312.49 Aligned_cols=253 Identities=18% Similarity=0.260 Sum_probs=192.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhhHhhhhhccccccCCC---chHHHHHHHHH
Q 021688 36 DMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPE---GELREKIEKLA 112 (309)
Q Consensus 36 ~~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~l~~~~~pl~~---~~L~~~i~~l~ 112 (309)
|.+|+.++..++.++++.+.+++.+ ..+|+++|++.+++.++..+++|.++.|++++ +|+++ |++++.++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~~~~p~L~~~v~~la 77 (283)
T PRK03001 2 NWVKTAMLMAAITALFIVIGGMIGG---SQGMLIALLFALGMNFFSYWFSDKMVLKMYNA-QEVDENTAPQFYRMVRELA 77 (283)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhc---hhhHHHHHHHHHHHHHHHHHHhHHHHHHHcCC-EECCccccHHHHHHHHHHH
Confidence 6788888888888887777777664 45588889999999999999999999999997 77765 69999999999
Q ss_pred HHcCCCCCceEEEeCCCCCCCccEEEeccCCC-ceeeecHhHHhhcCChhHHHHHHHHHHhhhhcchHHHHHHHHHHHHH
Q 021688 113 SSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKN-KRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTL 191 (309)
Q Consensus 113 ~~~g~~~~~i~v~~~~~~s~~~NA~~~G~~~~-~~I~l~~~ll~~l~~~~El~aVlaHElgH~~~~h~~~~~~~~~~~~~ 191 (309)
++.|+|.|++|++|+ +.+|||++|.+++ ++|++++|+++.+ |+||++||+|||+||++++|..++.....+..+
T Consensus 78 ~~~g~~~p~v~v~~~----~~~NAfa~G~~~~~~~Ivvt~gLl~~l-~~~El~aVlAHElgHi~~~h~~~~~~~~~~~~~ 152 (283)
T PRK03001 78 QRAGLPMPKVYLINE----DQPNAFATGRNPEHAAVAATTGILRVL-SEREIRGVMAHELAHVKHRDILISTISATMAGA 152 (283)
T ss_pred HHcCCCCCeEEEecC----CCcceEEecCCCCCeEEEecHHHHhhC-CHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 999999999999996 5799999998754 5799999999999 999999999999999999999988765432221
Q ss_pred HH-HHHHHHHhcChhhHhhcCCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc-CChHHHHHHHH
Q 021688 192 LQ-FGGYTLVRNSTDLFRSFGFDTQP-VLIGLIIFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKL-GYASALRAGLV 268 (309)
Q Consensus 192 ~~-~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~E~~AD~~a~~~-g~~~~l~~aL~ 268 (309)
+. ...+. .++..++.++.+ ..+...++. ++.+. ...++.+.+||++|++||++|+++ +++++++++|.
T Consensus 153 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~SR~~E~~AD~~a~~l~~~p~~l~~AL~ 223 (283)
T PRK03001 153 ISALANFA------MFFGGRDENGRPVNPIAGIAVA-ILAPL--AASLIQMAISRAREFEADRGGARISGDPQALASALD 223 (283)
T ss_pred HHHHHHHH------HHhcCCCccccccchHHHHHHH-HHHHH--HHHHHHHHHhHHHHHHHhHHHHHHhCCHHHHHHHHH
Confidence 11 11111 112222221111 112221222 12222 245677899999999999999997 57999999999
Q ss_pred HHHHHhCCCC------CCc------------hhhhhhhcCCCCHHHHHHHcccccc
Q 021688 269 KLQEENLSAM------NTD------------PWYSAYHYSHPPLVERLAAIDEPDK 306 (309)
Q Consensus 269 ~l~~~~~~~~------~~~------------~~~~~~~~tHP~~~~Ri~~l~~~~~ 306 (309)
|+..++.+.+ .++ ..+..+++|||++.|||+++++.+.
T Consensus 224 Kl~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~l~~THP~~~eRI~~l~~~~~ 279 (283)
T PRK03001 224 KIHRYASGIPFQAAEAHPATAQMMIINPLSGGGLANLFSTHPSTEERIARLMAMAR 279 (283)
T ss_pred HHHhhhccCCcccccCCHHHHHHHhcCCCCcchHHHHHcCCcCHHHHHHHHHHHHH
Confidence 9998876432 111 1367899999999999999987654
No 3
>PRK03982 heat shock protein HtpX; Provisional
Probab=100.00 E-value=1.8e-43 Score=313.50 Aligned_cols=259 Identities=22% Similarity=0.247 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhhHhhhhhccccccC---CCchHHHHHHHH
Q 021688 35 RDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPL---PEGELREKIEKL 111 (309)
Q Consensus 35 ~~~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~l~~~~~pl---~~~~L~~~i~~l 111 (309)
.|.+|+.++.++++++++.+.+.. .+..||++++++.+++.++ .+++|..+.+.+++.+|+ ++|++++.++++
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~l~~~~~p~L~~~v~~l 77 (288)
T PRK03982 2 MNQLKTGLLMALLTGLLYAIGYLL---GGSIGPIIAILLALIPNLI-SYYYSDKIVLASYNARIVSEEEAPELYRIVERL 77 (288)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH---hchhHHHHHHHHHHHHHHH-HHHHhHHHHHHhcCCEECChhhhHHHHHHHHHH
Confidence 578888888777766655554422 2567888888888777776 556666788889999988 467899999999
Q ss_pred HHHcCCCCCceEEEeCCCCCCCccEEEeccCC-CceeeecHhHHhhcCChhHHHHHHHHHHhhhhcchHHHHHHHHHHHH
Q 021688 112 ASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFK-NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLT 190 (309)
Q Consensus 112 ~~~~g~~~~~i~v~~~~~~s~~~NA~~~G~~~-~~~I~l~~~ll~~l~~~~El~aVlaHElgH~~~~h~~~~~~~~~~~~ 190 (309)
|++.|+|.|++|++|+ +.+|||++|.++ ++.|++++|+++.+ |+||++||+|||+||++++|..++.....+..
T Consensus 78 a~~~g~~~p~v~v~~~----~~~NAfa~G~~~~~~~V~vt~gLl~~l-~~~El~AVlAHElgHi~~~h~~~~~~~~~~~~ 152 (288)
T PRK03982 78 AERANIPKPKVAIVPT----QTPNAFATGRDPKHAVVAVTEGILNLL-NEDELEGVIAHELTHIKNRDTLIQTIAATLAG 152 (288)
T ss_pred HHHcCCCCCeEEEEeC----CCcceEEeccCCCCeEEEeehHHHhhC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999986 469999999875 56788999999999 99999999999999999999999987655422
Q ss_pred HHHHHHHHHHhcChhhHhhcCCCC--CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC-ChHHHHHHH
Q 021688 191 LLQFGGYTLVRNSTDLFRSFGFDT--QPVLIGLIIFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKLG-YASALRAGL 267 (309)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~E~~AD~~a~~~g-~~~~l~~aL 267 (309)
.+.+. ...+ ....++..+|.+. .+..++..++.. +.++ ...++.+.+||++|++||++|++++ ++++++++|
T Consensus 153 ~~~~l-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~l~~~~~SR~~E~~AD~~A~~~~~~p~~l~~aL 227 (288)
T PRK03982 153 AIMYL-AQWL-SWGLWFGGGGRDDRNGGNPIGSLLLII-LAPI--AATLIQFAISRQREFSADEGGARLTGNPLALANAL 227 (288)
T ss_pred HHHHH-HHHH-HHHHHhcccCccccccchHHHHHHHHH-HHHH--HHHHHHHHHhHHHHHHHhHHHHHHhCCHHHHHHHH
Confidence 22211 1111 1112233333221 123334333322 2222 2456778999999999999999985 789999999
Q ss_pred HHHHHHhCCCC----------------CCchhhhhhhcCCCCHHHHHHHccccccc
Q 021688 268 VKLQEENLSAM----------------NTDPWYSAYHYSHPPLVERLAAIDEPDKK 307 (309)
Q Consensus 268 ~~l~~~~~~~~----------------~~~~~~~~~~~tHP~~~~Ri~~l~~~~~~ 307 (309)
.|++..+.+.+ .+++.+..+++|||++++||+++++..++
T Consensus 228 ~kL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~sTHP~~~eRI~~l~~~~~~ 283 (288)
T PRK03982 228 QKLEKGVRYIPLKNGNPATAHMFIINPFRGQFLANLFSTHPPTEERIERLLEMAQE 283 (288)
T ss_pred HHHHhhhccCCCCCCCHHHHhHhhcCCCCCchhhHHhCCCcCHHHHHHHHHHHHHh
Confidence 99998654322 13345778999999999999999876543
No 4
>PRK01265 heat shock protein HtpX; Provisional
Probab=100.00 E-value=1.2e-41 Score=301.84 Aligned_cols=228 Identities=24% Similarity=0.337 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHhhhHhhhhhcc--ccccCC--CchHHHHHHHHHHHcCCCCCceEEEeCCCCCCCccEEEeccC-CCce
Q 021688 72 AFMFVLSLVMMTLYPVLIAPLFN--KFTPLP--EGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFF-KNKR 146 (309)
Q Consensus 72 ~~~~~~~~~~~~~~p~~i~~l~~--~~~pl~--~~~L~~~i~~l~~~~g~~~~~i~v~~~~~~s~~~NA~~~G~~-~~~~ 146 (309)
++.+++.++.++++|.++.++++ +++|.+ +|+|++.++++|++.|+|.|++|++|++ .+|||++|.+ ++++
T Consensus 49 ~~~~~~~~~~~~~sp~li~~~~~a~~~~p~~~~~~~L~~~v~~la~~~g~~~p~vyv~~~~----~~NAfa~G~~~~~~~ 124 (324)
T PRK01265 49 IFVFFLNIIQWLFGPYMINAAYRTVEVTPTDPVYGWLYSIVAEVAKYNGIRVPKVYIADVP----FPNAFAYGSPIAGKR 124 (324)
T ss_pred HHHHHHHHHHHHHhHHHHHHHcCCeeCCCCCcccHHHHHHHHHHHHHcCCCCCeEEEecCC----CCCeEEeccCCCCCE
Confidence 34456677888999999999996 788887 7899999999999999999999999974 5999999986 5789
Q ss_pred eeecHhHHhhcCChhHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHhcChhhHhhcCCCCCchHHHHHHHHH
Q 021688 147 IVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQH 226 (309)
Q Consensus 147 I~l~~~ll~~l~~~~El~aVlaHElgH~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 226 (309)
|++++++++.+ |+||++||+|||+||++++|+.++.....+..++.+...... ...++..+|.+......++.++..
T Consensus 125 Ivvt~gLl~~l-~~~El~aVlAHElgHik~~d~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~l~~l 201 (324)
T PRK01265 125 IAITLPLLKIL-NRDEIKAVAGHELGHLKHRDVELLMAIGLIPTLIYYLGYSLF--WGGMFGGGGGGRGNNGGLLFLIGI 201 (324)
T ss_pred EEEehHHHhhC-CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHH--HHHHhcccccCCCccchHHHHHHH
Confidence 99999999999 999999999999999999999998876655544433222211 122233333222111112233344
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHhCC--------C-----------CCC-c---
Q 021688 227 TVIPIQHLVSFGLNLVSRSFEFQADAFAKKL--GYASALRAGLVKLQEENLS--------A-----------MNT-D--- 281 (309)
Q Consensus 227 ~~~~~~~~~~~~~~~~sR~~E~~AD~~a~~~--g~~~~l~~aL~~l~~~~~~--------~-----------~~~-~--- 281 (309)
++.++..+..++.+++||.+||+||++|++. |+|+++++||+|+...... . ..+ .
T Consensus 202 l~~~~~~i~~~l~~aiSR~rEy~AD~~aa~~~tg~p~~LasAL~KL~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~ 281 (324)
T PRK01265 202 ALMAVSFVFNLLVLSINRMREAYADVNSALTVPGGAENLQTALAKITLSMDPGALERFKKKSTTNQMASMLFFSNAIEEV 281 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCChHHHHHHHHHHHhcccccccccccccccCChhhhhheeeCccccc
Confidence 4455566678899999999999999999995 8999999999999863321 0 000 0
Q ss_pred -----------------hhhhhhhcCCCCHHHHHHHcccccc
Q 021688 282 -----------------PWYSAYHYSHPPLVERLAAIDEPDK 306 (309)
Q Consensus 282 -----------------~~~~~~~~tHP~~~~Ri~~l~~~~~ 306 (309)
.....+|+|||++++||++|++.++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~lFsTHPp~e~Ri~rL~~~~~ 323 (324)
T PRK01265 282 PTWDARELVEYWKTTKVPWYADIFSDHPHPAKRIQLLEKLSK 323 (324)
T ss_pred ccchhhhhhhhhcccchhHHHHHhCCCcChHHHHHHHHHhhh
Confidence 1356899999999999999998754
No 5
>PRK03072 heat shock protein HtpX; Provisional
Probab=100.00 E-value=6e-40 Score=289.90 Aligned_cols=254 Identities=19% Similarity=0.224 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhhHhhhhhcc--ccccCCCchHHHHHHHHHH
Q 021688 36 DMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFN--KFTPLPEGELREKIEKLAS 113 (309)
Q Consensus 36 ~~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~l~~--~~~pl~~~~L~~~i~~l~~ 113 (309)
+.+++.++..++.+.++. +.|++ |....++..++.+++.++.++..+..+....+ ..+|.++|+|++.++++|+
T Consensus 6 ~~~~t~~l~~~~~~~~~~-~g~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~~~~p~L~~~v~~la~ 81 (288)
T PRK03072 6 NGLKTALLLGGMSALIVF-IGALF---GRTGLGIAVLIAVGMNAYVYWNSDKLALRAMHAQPVSEVQAPAMYRIVRELST 81 (288)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCEECChhhhHHHHHHHHHHHH
Confidence 445555544444333222 22333 23334444455666677778888877766553 3466778999999999999
Q ss_pred HcCCCCCceEEEeCCCCCCCccEEEeccCC-CceeeecHhHHhhcCChhHHHHHHHHHHhhhhcchHHHHHHHHHHHHHH
Q 021688 114 SLKFPLKKLFVVDGSTRSSHSNAYMYGFFK-NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLL 192 (309)
Q Consensus 114 ~~g~~~~~i~v~~~~~~s~~~NA~~~G~~~-~~~I~l~~~ll~~l~~~~El~aVlaHElgH~~~~h~~~~~~~~~~~~~~ 192 (309)
+.|+|.|++|++|+ +.+|||++|..+ +..|++++++++.+ |+||++||+|||+||++++|+.++.....+...+
T Consensus 82 ~~g~p~p~vyv~~~----~~~NAFa~G~~~~~~~v~vt~gLl~~l-~~~El~aVlAHElgHi~~~d~~~~~~~~~~~~~i 156 (288)
T PRK03072 82 AARQPMPRLYISPT----AAPNAFATGRNPRNAAVCCTEGILQIL-NERELRGVLGHELSHVYNRDILISSVAGALASVI 156 (288)
T ss_pred HcCCCCCCEEEecC----CCCceEEecCCCCCcEEEecHHHHHhC-CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 99999999999996 469999999643 44589999999999 9999999999999999999999998766544332
Q ss_pred HHHHHHHHhcChhhHhhcCCCC---CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc-CChHHHHHHHH
Q 021688 193 QFGGYTLVRNSTDLFRSFGFDT---QPVLIGLIIFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKL-GYASALRAGLV 268 (309)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~E~~AD~~a~~~-g~~~~l~~aL~ 268 (309)
.+... . ..++..+|.+. .+..+++.++. ++.++ ...++.+.+||.+||+||++|+++ |+|++++++|+
T Consensus 157 ~~l~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~--~~~~~~~~~SR~rE~~AD~~A~~l~~~p~~La~AL~ 228 (288)
T PRK03072 157 TYLAN--M---AMFAGMFGGRRDNDGPNPLALLLVS-LLGPI--AATVIQLAISRSREYQADESGAELTGDPLALASALR 228 (288)
T ss_pred HHHHH--H---HHHHHHhccccccccchHHHHHHHH-HHHHH--HHHHHHHHHHhHHHHHHhHHHHHHhCCHHHHHHHHH
Confidence 22111 0 11122233221 12233332222 22222 346778899999999999999997 57999999999
Q ss_pred HHHHHhCCCCCCc------------------hhhhhhhcCCCCHHHHHHHcccccc
Q 021688 269 KLQEENLSAMNTD------------------PWYSAYHYSHPPLVERLAAIDEPDK 306 (309)
Q Consensus 269 ~l~~~~~~~~~~~------------------~~~~~~~~tHP~~~~Ri~~l~~~~~ 306 (309)
|+...+.+.+.++ ..+..+++|||+++|||++|++...
T Consensus 229 KL~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~l~sTHP~~~eRI~~L~~~~~ 284 (288)
T PRK03072 229 KISGGVQAAPLPPEPQLASQAHLMIANPFRAGGIGRLFSTHPPMADRIARLEQMAG 284 (288)
T ss_pred HHHhccccCCCCccccchhhhhhhhcCcccchHHHHHHcCCcCHHHHHHHHHHHhh
Confidence 9998765433222 2478999999999999999987654
No 6
>PRK02391 heat shock protein HtpX; Provisional
Probab=100.00 E-value=9.8e-40 Score=288.82 Aligned_cols=228 Identities=22% Similarity=0.190 Sum_probs=163.2
Q ss_pred HHHHHHHHHHHHHHHhhhHhhhhhcc--ccccCCCchHHHHHHHHHHHcCCCCCceEEEeCCCCCCCccEEEeccCC-Cc
Q 021688 69 YLWAFMFVLSLVMMTLYPVLIAPLFN--KFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFK-NK 145 (309)
Q Consensus 69 ~~~~~~~~~~~~~~~~~p~~i~~l~~--~~~pl~~~~L~~~i~~l~~~~g~~~~~i~v~~~~~~s~~~NA~~~G~~~-~~ 145 (309)
++.++.+++.++.++..|..+....+ +.+|.++|++++.++++|++.|+|.|++|++|+ +.+|||++|.++ ++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~~v~~la~~~~~~~p~v~v~~~----~~~NAfa~G~~~~~~ 116 (296)
T PRK02391 41 LIVVIAGGFLLAQYFFSDKLALWSMGARIVSEDEYPELHAMVERLCALADLPKPRVAVADS----DVPNAFATGRSPKNA 116 (296)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHcCCEECChhhCHHHHHHHHHHHHHcCCCCCcEEEEeC----CCCceEEecCCCCCc
Confidence 33455566667778888877665543 456778899999999999999999999999995 579999999874 56
Q ss_pred eeeecHhHHhhcCChhHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHhcChhhHhhcCCCCCchHHHHHHHH
Q 021688 146 RIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQ 225 (309)
Q Consensus 146 ~I~l~~~ll~~l~~~~El~aVlaHElgH~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 225 (309)
.|++++|+++.+ |+||++||+|||+||++++|+.++.....+..+..+.. ... .++..++.+......+..++.
T Consensus 117 ~V~vt~gLl~~L-~~~El~aVlaHElgHi~~~di~~~~i~~~~~~~~~~l~-~~~----~~~~~~~~~~~~~~~~~~~~~ 190 (296)
T PRK02391 117 VVCVTTGLMRRL-DPDELEAVLAHELSHVKNRDVAVMTIASFLSTIAFLIV-RWG----FYFGGFGGRGGGGGGGGILVV 190 (296)
T ss_pred EEEecHHHHhhC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-HHH----HHhccccCCCCcccchHHHHH
Confidence 688999999999 99999999999999999999999887655543332211 110 111112111111101111111
Q ss_pred HHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhCC---------------CCCCc---hhhh
Q 021688 226 HTVIP-IQHLVSFGLNLVSRSFEFQADAFAKKL-GYASALRAGLVKLQEENLS---------------AMNTD---PWYS 285 (309)
Q Consensus 226 ~~~~~-~~~~~~~~~~~~sR~~E~~AD~~a~~~-g~~~~l~~aL~~l~~~~~~---------------~~~~~---~~~~ 285 (309)
.++.+ ...+..++.+.+||.+||+||++|+++ |+|+++++||.|++..... ...++ +.+.
T Consensus 191 ~~~~~~~~~~~~~l~~~~SR~rE~~AD~~Aa~ltg~p~~LasAL~KL~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~ 270 (296)
T PRK02391 191 ILVSLVVWAISFLLIRALSRYREFAADRGAAIITGRPSALASALMKISGRMDRVPTEDLREAEGMNAFFIIPALSGGSLG 270 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHcccccCCchhhcccHHHhhhcccCCCCcchHH
Confidence 12222 222345678899999999999999997 6799999999999875211 12222 5678
Q ss_pred hhhcCCCCHHHHHHHcccccc
Q 021688 286 AYHYSHPPLVERLAAIDEPDK 306 (309)
Q Consensus 286 ~~~~tHP~~~~Ri~~l~~~~~ 306 (309)
.+++|||++++||++|++..+
T Consensus 271 ~l~sTHP~~~eRI~~L~~~~~ 291 (296)
T PRK02391 271 RLFSTHPPLEKRIAQLEKLER 291 (296)
T ss_pred HHhcCCcCHHHHHHHHHHHHH
Confidence 999999999999999987643
No 7
>PRK02870 heat shock protein HtpX; Provisional
Probab=100.00 E-value=2.1e-38 Score=282.90 Aligned_cols=223 Identities=20% Similarity=0.300 Sum_probs=158.1
Q ss_pred HHHHHHHHHHHHHHHhhhHhhhhhcc-------ccccCCCchHHHHHHHHHHHcCCC-CCceEEEeCCCCCCCccEEEec
Q 021688 69 YLWAFMFVLSLVMMTLYPVLIAPLFN-------KFTPLPEGELREKIEKLASSLKFP-LKKLFVVDGSTRSSHSNAYMYG 140 (309)
Q Consensus 69 ~~~~~~~~~~~~~~~~~p~~i~~l~~-------~~~pl~~~~L~~~i~~l~~~~g~~-~~~i~v~~~~~~s~~~NA~~~G 140 (309)
+..++.++..++.++.++..+.+..+ +..|.+++++++.+++++++.|+| .|++|++|+ +.+|||++|
T Consensus 75 ~~~~~~~~~~~~~y~~~~~~~l~~~~a~~I~~~~~~p~~~~~L~~~ve~La~~ag~p~~p~V~vi~~----~~~NAFA~G 150 (336)
T PRK02870 75 IMSLVAVISILVTFQNFDKIMLSGTEYKEITPENALSLQERQLYNVVEELLVAAGLRFMPKVYIIDA----PYMNAFASG 150 (336)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHcCCEEcCCCCCCchhhHHHHHHHHHHHHHcCCCCCCeEEEEcC----CCCceEEec
Confidence 33344555566667777766655432 234455779999999999999999 799999996 469999999
Q ss_pred cC-CCceeeecHhHHhhcCChhHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHhcChhhHhhcCCCC---C-
Q 021688 141 FF-KNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDT---Q- 215 (309)
Q Consensus 141 ~~-~~~~I~l~~~ll~~l~~~~El~aVlaHElgH~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~- 215 (309)
.+ ++++|++++|+++.+ |+||++||+|||+||++|+|..+......+..++.... .. .++..+|... .
T Consensus 151 ~~~~~~~Ivvt~GLL~~L-~~dEL~aVlAHELgHik~~di~~~~~~~~l~~~~~~~~-~~-----~~~~~~g~~~~~~~~ 223 (336)
T PRK02870 151 YSEKSAMVAITTGLLEKL-DRDELQAVMAHELSHIRHGDIRLTLCVGVLSNIMLIVA-DF-----LFYSFMGNRRNSGAN 223 (336)
T ss_pred CCCCCcEEEEehHHhhhC-CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH-HH-----HHHHHhcCCcccccc
Confidence 87 478999999999999 99999999999999999999988776554433221111 10 1112223211 1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhCCCCC--------C------
Q 021688 216 PVLIGLIIFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKL-GYASALRAGLVKLQEENLSAMN--------T------ 280 (309)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~E~~AD~~a~~~-g~~~~l~~aL~~l~~~~~~~~~--------~------ 280 (309)
...+.+.++..+. + .+..++.+++||.+||+||++|+++ ++|+++++||+|++..+...+. .
T Consensus 224 ~~~~~~l~l~~~~-~--~~~~ll~~~iSR~rEy~AD~~Aa~ltg~p~aLasAL~KL~~~~~~~~~~~~~~~~~~~~~~a~ 300 (336)
T PRK02870 224 RARMIILILRYVL-P--ILTVLLMLFLSRTREYMADAGAVELMRDNEPMARALQKISNDHAQNDEQYAYKHTDHESTRRA 300 (336)
T ss_pred hhHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHhccccCccccccccccCChhhhh
Confidence 1122222222222 2 2345678899999999999999998 6789999999999987654320 0
Q ss_pred ----ch------hhhhhhcCCCCHHHHHHHccccc
Q 021688 281 ----DP------WYSAYHYSHPPLVERLAAIDEPD 305 (309)
Q Consensus 281 ----~~------~~~~~~~tHP~~~~Ri~~l~~~~ 305 (309)
+| ....+++|||++++||++|+...
T Consensus 301 ~~i~~p~~~~~~~~~~LfsTHPp~e~RI~rL~~~~ 335 (336)
T PRK02870 301 AYLFDPAGISPGSLSDAFSTHPSIENRLAALGGKL 335 (336)
T ss_pred hhccCCcccccccHhHHHcCCCCHHHHHHHHhhcc
Confidence 11 13579999999999999998654
No 8
>PRK04897 heat shock protein HtpX; Provisional
Probab=100.00 E-value=2.9e-38 Score=280.73 Aligned_cols=225 Identities=22% Similarity=0.290 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHHHHhhhHhhhhhccccccC---CCchHHHHHHHHHHHcCCCCCceEEEeCCCCCCCccEEEeccCC-C
Q 021688 69 YLWAFMFVLSLVMMTLYPVLIAPLFNKFTPL---PEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFK-N 144 (309)
Q Consensus 69 ~~~~~~~~~~~~~~~~~p~~i~~l~~~~~pl---~~~~L~~~i~~l~~~~g~~~~~i~v~~~~~~s~~~NA~~~G~~~-~ 144 (309)
+..++.+++.++.++..+.++. ...+.+|+ ++|++++.++++|++.|+|.|++|++|+ +.+|||++|.++ +
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~v~~~~~p~L~~~v~~la~~~gip~p~v~v~~~----~~~NAfa~G~~~~~ 119 (298)
T PRK04897 45 IALIIGVIYALIMIFQSTNVVM-SMNHAREVTEEEAPELWHIVEDMAMVAQIPMPRVFIIDD----PSPNAFATGSSPKN 119 (298)
T ss_pred HHHHHHHHHHHHHHHhhHHHHH-HhCCCEECChhhhHHHHHHHHHHHHHcCCCCCcEEEecC----CCCceEEeccCCCC
Confidence 3334445555666666675544 44557776 5689999999999999999999999996 469999999874 5
Q ss_pred ceeeecHhHHhhcCChhHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHhcChhhHhhcCC----CCCchH--
Q 021688 145 KRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGF----DTQPVL-- 218 (309)
Q Consensus 145 ~~I~l~~~ll~~l~~~~El~aVlaHElgH~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~~~-- 218 (309)
+.|++++|+++.+ |+||++||+|||+||++++|+.++.....+..++.+ +...+.. ..++...+. +..+..
T Consensus 120 ~~v~vt~gLl~~l-~~~El~aVlAHElgHi~~~d~~~~~~~~~~~~~~~~-l~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 196 (298)
T PRK04897 120 AAVAVTTGLLAIM-NREELEGVIGHEISHIRNYDIRLSTIAVALASAITL-LSDIAGR-MMWWGGGSRRRDDDRDGGGLQ 196 (298)
T ss_pred cEEEeehHHHhhC-CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-HHHHHHH-HHHhcccccccccccccchhh
Confidence 6799999999999 999999999999999999999998876554333322 1111111 011111111 011111
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHhCCCC----------CCchhh
Q 021688 219 IGLI---IFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKLG-YASALRAGLVKLQEENLSAM----------NTDPWY 284 (309)
Q Consensus 219 ~~~~---~~~~~~~~~~~~~~~~~~~~sR~~E~~AD~~a~~~g-~~~~l~~aL~~l~~~~~~~~----------~~~~~~ 284 (309)
+... ++..++.|+ ...++.+++||++||+||++|++++ +|+++++||+|++..+.... ..+|++
T Consensus 197 ~~~~~~~l~~~i~~~~--~~~ll~~~~SR~rE~~AD~~A~~lt~~p~~La~AL~KL~~~~~~~~~~~~~~~~~~i~~p~~ 274 (298)
T PRK04897 197 IILLIVSLLLLILAPL--AATLIQLAISRQREYLADASSVELTRNPQGLISALEKISNSQPMKHPVDDASAALYISDPLK 274 (298)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccccccccChHHHHhccCCCcc
Confidence 1111 111222232 2356678999999999999999984 68999999999998765321 124443
Q ss_pred ----hhhhcCCCCHHHHHHHccc
Q 021688 285 ----SAYHYSHPPLVERLAAIDE 303 (309)
Q Consensus 285 ----~~~~~tHP~~~~Ri~~l~~ 303 (309)
..+++|||+++|||+++++
T Consensus 275 ~~~~~~lfsTHP~~~eRI~~L~~ 297 (298)
T PRK04897 275 KKGLSKLFDTHPPIEERIERLKN 297 (298)
T ss_pred cchHHHHHcCCcCHHHHHHHHHc
Confidence 7899999999999999975
No 9
>PRK05457 heat shock protein HtpX; Provisional
Probab=100.00 E-value=9.3e-38 Score=274.91 Aligned_cols=222 Identities=23% Similarity=0.213 Sum_probs=154.0
Q ss_pred HHHHHHHHHHHHhhhHhhhhhccccccCC----Cc--hHHHHHHHHHHHcCCCCCceEEEeCCCCCCCccEEEeccCC-C
Q 021688 72 AFMFVLSLVMMTLYPVLIAPLFNKFTPLP----EG--ELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFK-N 144 (309)
Q Consensus 72 ~~~~~~~~~~~~~~p~~i~~l~~~~~pl~----~~--~L~~~i~~l~~~~g~~~~~i~v~~~~~~s~~~NA~~~G~~~-~ 144 (309)
++.++..++.++..|..+....+ .++++ ++ .+++.++++|++.|+|.|++|++|+ +.+|||++|.++ +
T Consensus 42 ~~~~~~~~~~~~~~~~i~~~~~~-a~~i~~~~~~~~~~L~~~v~~la~~~g~p~p~v~v~~~----~~~NAfa~G~~~~~ 116 (284)
T PRK05457 42 VFGFGGSFISLLMSKWMAKRSTG-AEVIEQPRNETERWLVETVARQARQAGIGMPEVAIYHS----PEINAFATGASKNN 116 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-CeECCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEeC----CCceEEEecCCCCC
Confidence 33444556667777766555443 44442 33 4999999999999999999999996 579999999874 4
Q ss_pred ceeeecHhHHhhcCChhHHHHHHHHHHhhhhcchHHHHHHHHHH-HHHHHHH--HHHHHhcChhhHhhcCCCCCchHHHH
Q 021688 145 KRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQV-LTLLQFG--GYTLVRNSTDLFRSFGFDTQPVLIGL 221 (309)
Q Consensus 145 ~~I~l~~~ll~~l~~~~El~aVlaHElgH~~~~h~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~ 221 (309)
+.|++++|+++.+ |+||++||+|||+||++++|+.+......+ ..++.+. ++...... .. .+-.+.+.....
T Consensus 117 ~~V~vt~gLl~~L-~~~El~aVlAHElgHi~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~ 191 (284)
T PRK05457 117 SLVAVSTGLLQNM-SRDEVEAVLAHEISHIANGDMVTMTLIQGVVNTFVIFLSRIIAQIVDR--FV--SGNEEGNGIGYF 191 (284)
T ss_pred eEEEeehHHhhhC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hc--ccCcccccHHHH
Confidence 5688999999999 999999999999999999999987654333 2222211 11111110 00 000111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCCCCCCchh----------hhhhhcCC
Q 021688 222 IIFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKLGYASALRAGLVKLQEENLSAMNTDPW----------YSAYHYSH 291 (309)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~sR~~E~~AD~~a~~~g~~~~l~~aL~~l~~~~~~~~~~~~~----------~~~~~~tH 291 (309)
.....+...+..+.+++.+++||++||+||++|+++++|+++++||+|+...+. ...+++. +..+++||
T Consensus 192 ~~~~l~~~~~~~~~~ll~~~~SR~rEy~AD~~Aa~ltgp~~L~~AL~KL~~~~~-~~~~~~~~~~~i~~~~~~~~lfsTH 270 (284)
T PRK05457 192 IVSIVLEIVFGILASIIVMWFSRHREFRADAGGAKLAGREKMIAALQRLKTSYE-PQLPGSMAAFGINGKSGLSELFMSH 270 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCc-cCCChHHHHhhccCchhHHHHHcCC
Confidence 111111112334567788999999999999999999889999999999998766 2233332 68899999
Q ss_pred CCHHHHHHHcccc
Q 021688 292 PPLVERLAAIDEP 304 (309)
Q Consensus 292 P~~~~Ri~~l~~~ 304 (309)
|+++|||+++++.
T Consensus 271 P~~~eRI~~L~~~ 283 (284)
T PRK05457 271 PPLEKRIAALRSG 283 (284)
T ss_pred cCHHHHHHHHHhC
Confidence 9999999999864
No 10
>PRK01345 heat shock protein HtpX; Provisional
Probab=100.00 E-value=6.9e-38 Score=279.59 Aligned_cols=225 Identities=20% Similarity=0.292 Sum_probs=162.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHhhhhhccc--cccCCCchHHHHHHHHHHHcCCCCCceEEEeCCCCCCCccEEEeccCC-C
Q 021688 68 IYLWAFMFVLSLVMMTLYPVLIAPLFNK--FTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFK-N 144 (309)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~p~~i~~l~~~--~~pl~~~~L~~~i~~l~~~~g~~~~~i~v~~~~~~s~~~NA~~~G~~~-~ 144 (309)
++..++.+++.++..+..|.++.+.++. .+|.++|++++.++++|++.|+|.|++|++|+ +.+|||++|.++ +
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~~~~~p~L~~~v~~La~~agi~~p~v~vid~----~~~NAFa~G~~~~~ 106 (317)
T PRK01345 31 MIALVIAAGMNLFSYWNSDKMVLRMYGAQEVDERSAPELYRMVRDLARRAGLPMPKVYIIDN----PQPNAFATGRNPEN 106 (317)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHcCCeECCcccCHHHHHHHHHHHHHcCCCCCcEEEEcC----CCcceEEecCCCCC
Confidence 3444556667778888899888888775 56777899999999999999999999999996 579999999864 6
Q ss_pred ceeeecHhHHhhcCChhHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHH-HHHHHHhcChhhHhhcCCC-CCc-hHHHH
Q 021688 145 KRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQF-GGYTLVRNSTDLFRSFGFD-TQP-VLIGL 221 (309)
Q Consensus 145 ~~I~l~~~ll~~l~~~~El~aVlaHElgH~~~~h~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~-~~~-~~~~~ 221 (309)
++|++++|+++.+ |+||++||+|||+||++++|..++.....+...+.. ..+..+... ...+ ..+ ..++.
T Consensus 107 ~~V~vt~gLL~~L-~~dEL~aVlAHElgHi~~~d~~~~~l~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~i~~ 179 (317)
T PRK01345 107 AAVAATTGLLQRL-SPEEVAGVMAHELAHVKNRDTLTMTITATLAGAISMLANFAFFFGG------NRENNNGPLGLVGT 179 (317)
T ss_pred eEEEechHHHhhC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcC------CcccccchHHHHHH
Confidence 6899999999999 999999999999999999999988765543222111 111111110 0000 111 12222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhCCCCC----C----------ch----
Q 021688 222 IIFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKL-GYASALRAGLVKLQEENLSAMN----T----------DP---- 282 (309)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~sR~~E~~AD~~a~~~-g~~~~l~~aL~~l~~~~~~~~~----~----------~~---- 282 (309)
. +..++.++ ...++...+||.+|++||++|+++ +++++++++|+|++..+...+. . ++
T Consensus 180 ~-~~~~~~~~--~~~l~~~~~SR~rE~~AD~~A~~ltg~p~~L~~AL~KL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (317)
T PRK01345 180 L-AAMIVAPL--AAMLVQMAISRTREYAADRRGAEICGNPLWLASALGKIERGAHGVPNEEAERNPATAHMFIINPLSGE 256 (317)
T ss_pred H-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccCcccccccChHHHHHHhcCCcccc
Confidence 1 11122232 234567889999999999999996 7899999999999975432110 0 01
Q ss_pred hhhhhhcCCCCHHHHHHHcccccc
Q 021688 283 WYSAYHYSHPPLVERLAAIDEPDK 306 (309)
Q Consensus 283 ~~~~~~~tHP~~~~Ri~~l~~~~~ 306 (309)
....+++|||++++||+++++..+
T Consensus 257 ~~~~lfsTHP~~~eRI~~L~~~~~ 280 (317)
T PRK01345 257 GMDNLFSTHPATENRIAALQRMAG 280 (317)
T ss_pred chhHHhcCCcChHHHHHHHHHHHH
Confidence 134789999999999999987544
No 11
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=100.00 E-value=7.7e-34 Score=244.47 Aligned_cols=206 Identities=39% Similarity=0.562 Sum_probs=117.1
Q ss_pred HHHHHhhhHhhhhhccccccCCCchHHHHHHHHHHHc--CCCCCceEEEeCCCCCCCccEEEeccCCCceeeecHhHHhh
Q 021688 79 LVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSL--KFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQ 156 (309)
Q Consensus 79 ~~~~~~~p~~i~~l~~~~~pl~~~~L~~~i~~l~~~~--g~~~~~i~v~~~~~~s~~~NA~~~G~~~~~~I~l~~~ll~~ 156 (309)
.++..+++.++.+++++.+|.++++|++.+++++++. +.|.+++|++++ +.+|||++|.+++++|+|++++++.
T Consensus 8 ~~~~~~~~~~~~~l~~~~~~~~~~~L~~~v~~l~~~~~~~~~~~~v~v~~~----~~~NA~~~g~~~~~~I~v~~~ll~~ 83 (226)
T PF01435_consen 8 LLLAFIGPPLIAPLFNKFTPLEDPELRRIVEELARRAGLGIPPPRVYVIDS----PSPNAFATGGGPRKRIVVTSGLLES 83 (226)
T ss_dssp STTGHHCCCCHCCHCTC--B-HHHHHHHHHHHHHHHHHCTSS--EEEEE------SSEEEEEETTTC--EEEEEHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCCCCCeEEEEcC----CCCcEEEEccCCCcEEEEeChhhhc
Confidence 3445666778899999999999999999999999999 888889999997 4599999998877899999999999
Q ss_pred cCChhHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHhcChhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHH
Q 021688 157 CKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIPIQHLVS 236 (309)
Q Consensus 157 l~~~~El~aVlaHElgH~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (309)
+ |+||+++|||||+||++++|..+......+..++.......+..........++.... ...+.....
T Consensus 84 ~-~~~el~aVlaHElgH~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~ 151 (226)
T PF01435_consen 84 L-SEDELAAVLAHELGHIKHRHILKSLLISLLLSILFFALLALLIGSMSLFSAFGFIDIL-----------GILIAFLFQ 151 (226)
T ss_dssp S-SHHHHHHHHHHHHHHHHTTHCCCCCCHHH-HHHHHHHHHT-----HHHHHHHH---------------------HHST
T ss_pred c-cHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccc-----------hhhHHHHHH
Confidence 9 9999999999999999999998886555444433333322222221111111110000 000012345
Q ss_pred HHHHHHhHHHHHHHHHHHHHcCChHHH-----------HHHHHHHHHHhCCCCCCchhhhhhhcCCCCHHHHHHH
Q 021688 237 FGLNLVSRSFEFQADAFAKKLGYASAL-----------RAGLVKLQEENLSAMNTDPWYSAYHYSHPPLVERLAA 300 (309)
Q Consensus 237 ~~~~~~sR~~E~~AD~~a~~~g~~~~l-----------~~aL~~l~~~~~~~~~~~~~~~~~~~tHP~~~~Ri~~ 300 (309)
.+.+.+||.+|++||++|++++++++. .+++.++...+......+..+..+++|||++.+||++
T Consensus 152 ~~~~~~sr~~E~~AD~~a~~~~~~~~~l~~a~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~tHP~~~~Ri~~ 226 (226)
T PF01435_consen 152 LLTNAFSRRQEYEADRYAARLGGDPALLARALYKPAAAISALEKLAEANSMRPDSDWRYSSLFSTHPSTEERIAA 226 (226)
T ss_dssp T------HHHHHHHHHHHHHH------HHHTTS-TTHHHHHHHHHT-----------------------HHHHHH
T ss_pred HhhcchhHHHHHHHHHHHHHhcCCcHHHHHhCCCHHHHHHHHHHHHHHhccccCCccccchhcCCCcCHHHHhCc
Confidence 678899999999999999999766665 7788888774444455566678899999999999985
No 12
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.7e-29 Score=226.73 Aligned_cols=224 Identities=26% Similarity=0.330 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHHHHhhhHhhhhhccc--cccCC--C----chHHHHHHHHHHHcCCC-CCceEEEeCCCCCCCccEEEec
Q 021688 70 LWAFMFVLSLVMMTLYPVLIAPLFNK--FTPLP--E----GELREKIEKLASSLKFP-LKKLFVVDGSTRSSHSNAYMYG 140 (309)
Q Consensus 70 ~~~~~~~~~~~~~~~~p~~i~~l~~~--~~pl~--~----~~L~~~i~~l~~~~g~~-~~~i~v~~~~~~s~~~NA~~~G 140 (309)
.+.+.+...++..+..+......... ..+.. . ..+..++.+++.+.+.+ .|++++.++ +.+|||++|
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~~~v~i~~~----~~~NAFa~g 134 (302)
T COG0501 59 ALLLAFAALLISLLFSKALVLKSLGALTLSEPILLAPRLYAVLLLKVAELARQAGIPHMPEVYILET----PQPNAFALG 134 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhceeecccccccchHHHHHHHHHHHHHHHHCCCCCCCeeEEecC----CCccceecC
Confidence 33444445555566666555544432 22211 1 23445899999999998 789999994 689999999
Q ss_pred cC-CCceeeecHhHHhhcCChhHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHhcChhhHhhcCCCCCchHH
Q 021688 141 FF-KNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLI 219 (309)
Q Consensus 141 ~~-~~~~I~l~~~ll~~l~~~~El~aVlaHElgH~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 219 (309)
.+ ++++|++++|+++.+ |+||++||+|||+||++++|..++.............+......... .+ + .
T Consensus 135 ~~~~~~~V~vt~gLl~~l-~~dEl~aVlaHElgHi~~rd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~----~ 203 (302)
T COG0501 135 GGPKNGRVVVTTGLLDLL-NDDELEAVLAHELGHIKNRHTLVRLTLRGLLASAFVLLATLALAAGL----LG--E----A 203 (302)
T ss_pred CCCCCeeEEecHHHHhhC-CHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHh----hc--c----h
Confidence 75 579999999999999 99999999999999999999998554443332222222222221110 00 0 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC----CCCCCchhh----hhhhcCC
Q 021688 220 GLIIFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKLGYASALRAGLVKLQEENL----SAMNTDPWY----SAYHYSH 291 (309)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~sR~~E~~AD~~a~~~g~~~~l~~aL~~l~~~~~----~~~~~~~~~----~~~~~tH 291 (309)
..................+.+.+||.+|++||++|+++.+++.++++|.|+...+. ....+++.. ..+++||
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~SR~~E~~AD~~a~~l~~~~~l~~aL~kl~~~~~~~~~~~~~~~~~~~~~~~~~~stH 283 (302)
T COG0501 204 ALALLLLLLLLALFLATLLVLAFSRKREYEADRFAAKLTGPEKLASALQKLARLSGRANSKAFIASGFSGGRLQALFSTH 283 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhchhhccChHHHHHHHHHHHhhhcccchhhhhcCcccccchHHHHhcC
Confidence 11111111222334567889999999999999999999779999999999998542 222333332 5899999
Q ss_pred CCHHHHHHHcccccccc
Q 021688 292 PPLVERLAAIDEPDKKE 308 (309)
Q Consensus 292 P~~~~Ri~~l~~~~~~~ 308 (309)
|++.+||++|++..++.
T Consensus 284 P~~~~Ri~~L~~~~~~~ 300 (302)
T COG0501 284 PPLAERIAALRQLALTV 300 (302)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999876543
No 13
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.88 E-value=1.7e-21 Score=176.27 Aligned_cols=190 Identities=21% Similarity=0.258 Sum_probs=130.2
Q ss_pred hhhccccccCCCchHHHHHHHHHH----HcCCCC--CceEEEeCCCCCCCccEEEeccCCCceeeecHhHHhhcCChhHH
Q 021688 90 APLFNKFTPLPEGELREKIEKLAS----SLKFPL--KKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEI 163 (309)
Q Consensus 90 ~~l~~~~~pl~~~~L~~~i~~l~~----~~g~~~--~~i~v~~~~~~s~~~NA~~~G~~~~~~I~l~~~ll~~l~~~~El 163 (309)
..+.+....++|+++.+.|+++.. ..|.+. -+++++++ +..|||++ ++++|+|++|++...+|++|+
T Consensus 58 ~Qlr~~~~~i~D~el~~yv~~~g~rL~~~a~~~~~~f~f~lV~d----~~iNAFA~---~Gg~v~vntGLll~ae~esEl 130 (484)
T COG4783 58 AQLRGSVPLIRDPELEEYVNSLGQRLAAAADLVKTPFTFFLVND----DSINAFAT---PGGYVVVNTGLLLTAENESEL 130 (484)
T ss_pred HHhccCCCCcCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecC----Cccchhhc---CCceEEEehHHHHhcCCHHHH
Confidence 334444455689999998876654 456653 27788886 57999998 378999999999999999999
Q ss_pred HHHHHHHHhhhhcchHHHHHHHHHH----HHH-HHHHHHHHHhcChhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 021688 164 VAVIAHELGHWKLNHTMYSFIAVQV----LTL-LQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIPIQHLVSFG 238 (309)
Q Consensus 164 ~aVlaHElgH~~~~h~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (309)
++|||||+||+..+|..+.+-...= ..+ +...+...+... ....+++..- . .....-
T Consensus 131 agViAHEigHv~qrH~aR~~e~~~r~~~~~i~~ml~gi~aa~a~~-----------~ag~a~iag~------~-a~~~~g 192 (484)
T COG4783 131 AGVIAHEIGHVAQRHLARSMEQQQRAAPMAIAGMLLGILAALAGA-----------DAGMAGIAGA------L-AGAAQG 192 (484)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhhchhHHHHHHHHHHHHHhCc-----------cccHHHHHHH------H-HHhhhh
Confidence 9999999999999999998865311 111 111111111111 1111221100 0 001111
Q ss_pred HHHHhHHHHHHHHHHHHHc----C-ChHHHHHHHHHHHHHhCCCCCCchhhhhhhcCCCCHHHHHHHcccccccc
Q 021688 239 LNLVSRSFEFQADAFAKKL----G-YASALRAGLVKLQEENLSAMNTDPWYSAYHYSHPPLVERLAAIDEPDKKE 308 (309)
Q Consensus 239 ~~~~sR~~E~~AD~~a~~~----g-~~~~l~~aL~~l~~~~~~~~~~~~~~~~~~~tHP~~~~Ri~~l~~~~~~~ 308 (309)
...+||.+|.+||++++.. | ++.+|.++++|+.........++ .|..|||-.++||+.+++..++.
T Consensus 193 ~L~~sR~~E~eADr~Gi~~L~raGydp~gM~~ff~rl~~~~~~~~~~p----~yl~THPlp~~RIa~lr~ra~q~ 263 (484)
T COG4783 193 QLNFSRQNEQEADRIGITTLVRAGYDPQGMPEFFERLADQLRYGGQPP----EYLLTHPLPEERIADLRNRAEQS 263 (484)
T ss_pred hhhcchhhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCC----hHHhcCCCchhHHHHHHHHHHhC
Confidence 4578999999999999875 5 47999999999997654433343 47799999999999998665443
No 14
>PF05569 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR008756 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M56 (clan M-). The predicted active site residues for members of this family occur in the motif HEXXH. The type example is BlaR1 peptidase from Bacillus licheniformis. Production of beta-Lactamase and penicillin-binding protein 2a (which mediate staphylococcal resistance to beta-lactam antibiotics) is regulated by a signal-transducing integral membrane protein and a transcriptional repressor. The signal transducer is a fusion protein with penicillin-binding and zinc metalloprotease domains. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription.
Probab=99.80 E-value=4.8e-18 Score=152.23 Aligned_cols=165 Identities=23% Similarity=0.352 Sum_probs=129.7
Q ss_pred hccccccCCCchHHHHHHHHHHHcCCCCC-ceEEEeCCCCCCCccEEEeccCCCceeeecHhHHhhcCChhHHHHHHHHH
Q 021688 92 LFNKFTPLPEGELREKIEKLASSLKFPLK-KLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHE 170 (309)
Q Consensus 92 l~~~~~pl~~~~L~~~i~~l~~~~g~~~~-~i~v~~~~~~s~~~NA~~~G~~~~~~I~l~~~ll~~l~~~~El~aVlaHE 170 (309)
+.++.++.++++..+.+++++++.|++.+ ++++.+ ....++++|+. +++|++++++.+.+ |++|++.|++||
T Consensus 131 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~s~-----~i~sP~~~G~~-~p~I~lP~~~~~~~-~~~el~~il~HE 203 (299)
T PF05569_consen 131 LLRKARPVEDEELQALLEECKEELGIKRPIRIRVSS-----GISSPFVFGFL-RPVIVLPESLLEDL-SEEELRAILLHE 203 (299)
T ss_pred HHHhccccCcHHHHHHHHHHHHHhCCCCceEEEEcC-----CCCCCeeecCc-ceEEEecCcccccc-CHHHHHHHHHHH
Confidence 45667888899999999999999998743 444444 34578888987 79999999999999 999999999999
Q ss_pred HhhhhcchHHHHHHHHHHHHHHHHHHHHHHhcChhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 021688 171 LGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIPIQHLVSFGLNLVSRSFEFQA 250 (309)
Q Consensus 171 lgH~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~E~~A 250 (309)
++|++++|.+...+...+. .+.+++++...+.+.+.+.+|+.|
T Consensus 204 l~Hikr~D~~~~~l~~l~~-------------------------------------~l~WfnP~~~~~~~~~~~~~E~~c 246 (299)
T PF05569_consen 204 LAHIKRRDLLWKLLAELLC-------------------------------------ALHWFNPLVWLLRRRIRRDRELAC 246 (299)
T ss_pred HHHHHCCChHHHHHHHHHH-------------------------------------HHHHhhHHHHHHHHHHHHHHHHhh
Confidence 9999999999998665442 122345566778899999999999
Q ss_pred HHHHHHc---CChHHHHHHHHHHHHHhCCCCCCchhhhhhhcCCCCHHHHHHHc
Q 021688 251 DAFAKKL---GYASALRAGLVKLQEENLSAMNTDPWYSAYHYSHPPLVERLAAI 301 (309)
Q Consensus 251 D~~a~~~---g~~~~l~~aL~~l~~~~~~~~~~~~~~~~~~~tHP~~~~Ri~~l 301 (309)
|+.+++. ++..+.+++|.++........ .+.....+..+.-.+++||+.+
T Consensus 247 D~~vl~~l~~~~~~~Y~~~Ll~~~~~~~~~~-~~~~~~~~~~~~~~lk~RI~~I 299 (299)
T PF05569_consen 247 DEAVLRNLGKEERKAYAETLLKVAKRSQQFK-RPPLASSFAFSKSQLKRRIKMI 299 (299)
T ss_pred hHHHHHhcCchhHHHHHHHHHHHHHhhcCCC-cchhhhhccCChHHHHHHHHhC
Confidence 9999987 456799999999988765422 2223333445788899999875
No 15
>KOG2661 consensus Peptidase family M48 [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.2e-18 Score=148.28 Aligned_cols=151 Identities=21% Similarity=0.295 Sum_probs=110.8
Q ss_pred ceEEEeCCCCCCCccEEEeccCCCceeeecHhHHhhcCChhHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHH
Q 021688 121 KLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLV 200 (309)
Q Consensus 121 ~i~v~~~~~~s~~~NA~~~G~~~~~~I~l~~~ll~~l~~~~El~aVlaHElgH~~~~h~~~~~~~~~~~~~~~~~~~~~~ 200 (309)
+|.|+++ +.+|||+. ++++|+|++|+++.++++|++++|+|||+||...||....+....+..++...++...
T Consensus 240 eihVVnd----PipNAFvL---PgGKvfVFtgiLn~ck~ddglAtvLgHE~aHaVarH~AEki~k~~~~siLgLvlyt~~ 312 (424)
T KOG2661|consen 240 EIHVVND----PIPNAFVL---PGGKVFVFTGILNSCKDDDGLATVLGHEIAHAVARHAAEKIGKVHLLSILGLVLYTMI 312 (424)
T ss_pred EEEEecC----CCCceeec---cCCeEEEEechhhcccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 6888887 56999986 5899999999999999999999999999999999999999876655444333332222
Q ss_pred hcChhhHhhcCCCCCchHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHHh
Q 021688 201 RNSTDLFRSFGFDTQPVLIGLIIFQHTVIPIQH-LVSFGLNLVSRSFEFQADAFAKKL-----GYASALRAGLVKLQEEN 274 (309)
Q Consensus 201 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sR~~E~~AD~~a~~~-----g~~~~l~~aL~~l~~~~ 274 (309)
... .+. .. .-..+..-+||++|.|||-++.-+ -++++....++++....
T Consensus 313 ~a~-----------~~n--------------~~Ll~~flrlPfSRKMEtEADyIGLlLma~Acfdpras~tvwErM~~~e 367 (424)
T KOG2661|consen 313 WAI-----------CPN--------------DKLLEYFLRLPFSRKMETEADYIGLLLMAKACFDPRASSTVWERMEFVE 367 (424)
T ss_pred hhc-----------cch--------------HHHHHHHhcCcchhhhhhhhhHHHHHHHHHhhcCcccchHHHHHHHHhh
Confidence 110 000 01 112345678999999999998654 46888888999997654
Q ss_pred CCCCCCchhhhhhhcCCCCHHHHHHHccccc
Q 021688 275 LSAMNTDPWYSAYHYSHPPLVERLAAIDEPD 305 (309)
Q Consensus 275 ~~~~~~~~~~~~~~~tHP~~~~Ri~~l~~~~ 305 (309)
.....+. ..+|.+|||+..+||+++++.-
T Consensus 368 gqmg~~~--~~eflSTHPSskkRie~~~~lL 396 (424)
T KOG2661|consen 368 GQMGQPK--MPEFLSTHPSSKKRIEYLDRLL 396 (424)
T ss_pred hhcCCCC--CchhhhcCCCccchhHHHHHhc
Confidence 3322221 2468899999999999887653
No 16
>COG4784 Putative Zn-dependent protease [General function prediction only]
Probab=99.70 E-value=3.3e-16 Score=135.62 Aligned_cols=175 Identities=21% Similarity=0.229 Sum_probs=117.9
Q ss_pred CCCchHHHHHHHHHHHcCC----C--CCceEEEeCCCCCCCccEEEeccCCCceeeecHhHHhhcCChhHHHHHHHHHHh
Q 021688 99 LPEGELREKIEKLASSLKF----P--LKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELG 172 (309)
Q Consensus 99 l~~~~L~~~i~~l~~~~g~----~--~~~i~v~~~~~~s~~~NA~~~G~~~~~~I~l~~~ll~~l~~~~El~aVlaHElg 172 (309)
..|+.+..++.++..+.-. | ..++-|+|+ +..|||+. ++++++|+.||+....|..|++|||+||+|
T Consensus 61 Y~D~Kler~Vari~g~lt~~S~~p~q~YriTilnS----P~INAFAL---PGGYlYitRGLlAland~sEvAAVl~HEmg 133 (479)
T COG4784 61 YRDPKLERMVARIVGALTAVSENPQQTYRITILNS----PNINAFAL---PGGYLYITRGLLALANDSSEVAAVLAHEMG 133 (479)
T ss_pred cCCHHHHHHHHHHHhHhhhhccCCCceEEEEEecC----CCcccccc---CCceEEEehhHHHHcCCHHHHHHHHHhhhh
Confidence 4567777777776665422 2 126778884 78999976 489999999999988788999999999999
Q ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHhcChhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 021688 173 HWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIPIQHLVSFGLNLVSRSFEFQADA 252 (309)
Q Consensus 173 H~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~E~~AD~ 252 (309)
|+..+|...+.-......+..-.. .-. +|.+.... .. ..........+||.+|.+||.
T Consensus 134 HVtAnHgi~rQ~~e~a~~ia~rvv-a~v---------l~~~~agk-~A-----------~~rGklrla~fsRnqELqAD~ 191 (479)
T COG4784 134 HVTANHGIQRQQREAAEVIASRVV-AEV---------LGSDAAGK-QA-----------LIRGKLRLAQFSRNQELQADA 191 (479)
T ss_pred heecchhHHHHHHHHHHHHHHHHH-HHH---------hCCcchhh-HH-----------HhhhhHHHhhhccchhhhhhh
Confidence 999999988875443322221111 001 11110000 00 011234467899999999999
Q ss_pred HHHHc----C-ChHHHHHHHHHHHHHhCCC---CCCchhhhhhhcCCCCHHHHHHHccc
Q 021688 253 FAKKL----G-YASALRAGLVKLQEENLSA---MNTDPWYSAYHYSHPPLVERLAAIDE 303 (309)
Q Consensus 253 ~a~~~----g-~~~~l~~aL~~l~~~~~~~---~~~~~~~~~~~~tHP~~~~Ri~~l~~ 303 (309)
.++++ | +|.++++.|..|+....-. ...+. -..|++|||...+||+-...
T Consensus 192 iG~~~lgeAGYDP~A~~rfl~sm~ay~~F~s~~g~adq-sldfl~sHPntpqRiqla~~ 249 (479)
T COG4784 192 IGIKMLGEAGYDPYAAARFLQSMAAYTDFRSVSGAADQ-SLDFLASHPNTPQRIQLARR 249 (479)
T ss_pred hhHHHHHhcCCChHHHHHHHHHHHhhhhhcccCcchhh-hcchhhcCCCChHHHHHHHH
Confidence 99986 4 4789999999987654211 11121 14688999999999987654
No 17
>COG4219 MecR1 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component [Transcription / Signal transduction mechanisms]
Probab=99.57 E-value=3.8e-13 Score=116.56 Aligned_cols=157 Identities=23% Similarity=0.264 Sum_probs=107.1
Q ss_pred CchHHHHHHHHHHHcCCCCCceEEEeCCCCCCCccEEEeccCCCceeeecHhHHhhcCChhHHHHHHHHHHhhhhcchHH
Q 021688 101 EGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTM 180 (309)
Q Consensus 101 ~~~L~~~i~~l~~~~g~~~~~i~v~~~~~~s~~~NA~~~G~~~~~~I~l~~~ll~~l~~~~El~aVlaHElgH~~~~h~~ 180 (309)
+.+.++.++++.++.... ++.+-- + ....+..++|.. .+.|++++...+.+ ++||++-|++||++|.+++|.+
T Consensus 135 e~d~~~~~~~~~~~~~~k--~i~ir~-s--~~i~~P~v~gl~-kp~IvlP~d~~~r~-~~ee~~yIilHEl~Hlk~gD~i 207 (337)
T COG4219 135 EVDKRKIVTILKNHQYKK--HILIRK-S--KAIDGPMVFGLV-KPCIVLPADFVERL-TDEELKYIILHELSHLKRGDAI 207 (337)
T ss_pred cccHHHHHHHHHHhhhcc--CeeEee-c--ccCCCceeeccC-cceEEccHHHHhhc-CHHhhhhhHhHHHhhhhcccHH
Confidence 345667777777766544 433332 2 245778888987 88999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCh
Q 021688 181 YSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKLGYA 260 (309)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~E~~AD~~a~~~g~~ 260 (309)
.+.+...+.. +-++++++.+....+..++|.+||+.+...-++
T Consensus 208 ~n~i~~~~~~-------------------------------------l~WfNP~v~l~~~~~~~D~E~aCDa~vL~~~~~ 250 (337)
T COG4219 208 INLIVVVLGV-------------------------------------LFWFNPLVHLGKRKIRIDQEIACDAAVLARINP 250 (337)
T ss_pred HHHHHHHHhH-------------------------------------HhhcChHHHHHHHHHHhhHHHHhhHHHHhccCh
Confidence 8875543321 123344556677888899999999999887433
Q ss_pred ---HHHHHHHHHHHHHhCCCCCCchhhhhhhcCCCCHHHHHHHcccc
Q 021688 261 ---SALRAGLVKLQEENLSAMNTDPWYSAYHYSHPPLVERLAAIDEP 304 (309)
Q Consensus 261 ---~~l~~aL~~l~~~~~~~~~~~~~~~~~~~tHP~~~~Ri~~l~~~ 304 (309)
.+.++++.++... .+.++-.+. +...-.-++.+|+..+...
T Consensus 251 ~err~YaEsil~~l~a-~s~~~l~~~--~~~g~nk~lk~Rl~~i~~~ 294 (337)
T COG4219 251 EERRTYAESILKLLLA-FSNPPLACH--WPAGGNKPLKERLIMIKEP 294 (337)
T ss_pred HHHHHHHHHHHHHHhc-ccCCCcccc--ccccccchHHHHHHHhhCC
Confidence 4667777775432 222222221 1223333677888888653
No 18
>PF04228 Zn_peptidase: Putative neutral zinc metallopeptidase; InterPro: IPR007343 Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=98.16 E-value=5.2e-05 Score=67.05 Aligned_cols=73 Identities=22% Similarity=0.285 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHcCCC--CCceEEEeCCCCCCCc------cEEEeccCCCceeeecHhHHhhcC------ChhHHHHHHHH
Q 021688 104 LREKIEKLASSLKFP--LKKLFVVDGSTRSSHS------NAYMYGFFKNKRIVLYDTLIQQCK------NDEEIVAVIAH 169 (309)
Q Consensus 104 L~~~i~~l~~~~g~~--~~~i~v~~~~~~s~~~------NA~~~G~~~~~~I~l~~~ll~~l~------~~~El~aVlaH 169 (309)
+.+...+..++.|.+ .|++.+.+...+|..- |||- ++.+.+|++....++.|+ .+-....||||
T Consensus 99 le~~W~~~~~~~g~~y~~P~lv~~~~~~~t~CG~a~s~~gpFY--Cp~D~tIYlD~~f~~~L~~~~ga~G~~a~ayVlAH 176 (292)
T PF04228_consen 99 LEDVWTPQFPQAGLPYRPPKLVLFSGSVQTGCGTASSATGPFY--CPADQTIYLDLSFFDELQQRFGASGDFAQAYVLAH 176 (292)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEeCCCCCCCCCCCcCCCCCEe--CCCCCEEEechHHHHHHHHHhCCccHHHHHHHHHH
Confidence 344555666677775 5788777766555432 3332 345789999988766551 12236779999
Q ss_pred HHhhhhcch
Q 021688 170 ELGHWKLNH 178 (309)
Q Consensus 170 ElgH~~~~h 178 (309)
|.||..++.
T Consensus 177 EyGHHVQ~l 185 (292)
T PF04228_consen 177 EYGHHVQNL 185 (292)
T ss_pred HHHHHHHHH
Confidence 999977654
No 19
>PF10463 Peptidase_U49: Peptidase U49; InterPro: IPR019504 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This entry contains peptidases belonging to MEROPS peptidase family U49 (Lit peptidase, clan U-). The Lit peptidase from Escherichia coli functions in bacterial cell death in response to infection by Enterobacteria phage T4. Following binding of Gol peptide to domains II and III of elongation factor Tu, the Lit peptidase cleaves domain I of the elongation factor. This prevents binding of guanine nucleotides, shuts down translation and leads to cell death.
Probab=97.80 E-value=5.7e-05 Score=63.10 Aligned_cols=23 Identities=35% Similarity=0.325 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHhhhhcchHHHH
Q 021688 160 DEEIVAVIAHELGHWKLNHTMYS 182 (309)
Q Consensus 160 ~~El~aVlaHElgH~~~~h~~~~ 182 (309)
.-.+..+++||++|+..+|....
T Consensus 98 ~~A~~fil~HE~~Hv~~~h~~~~ 120 (206)
T PF10463_consen 98 CCAIAFILLHELAHVVLGHEGDS 120 (206)
T ss_pred HHHHHHHHHHHHHHHHHcCcccc
Confidence 44578999999999999996643
No 20
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=97.64 E-value=0.00062 Score=51.81 Aligned_cols=35 Identities=34% Similarity=0.422 Sum_probs=27.9
Q ss_pred CceeeecHhHHhhcCChhHHHHHHHHHHhhhhcchHHHHH
Q 021688 144 NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSF 183 (309)
Q Consensus 144 ~~~I~l~~~ll~~l~~~~El~aVlaHElgH~~~~h~~~~~ 183 (309)
.+.|+++.. + ++.+-.+++|||+||+..+|.....
T Consensus 28 ~~~I~in~~----~-~~~~~~f~laHELgH~~~~~~~~~~ 62 (122)
T PF06114_consen 28 NPIIFINSN----L-SPERQRFTLAHELGHILLHHGDETF 62 (122)
T ss_dssp TTEEEEESS----S--HHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred CCEEEECCC----C-CHHHHHHHHHHHHHHHHhhhccccc
Confidence 678888887 3 8999999999999999988876544
No 21
>PRK09672 phage exclusion protein Lit; Provisional
Probab=97.50 E-value=0.00021 Score=62.29 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHhhhhcchHHH
Q 021688 160 DEEIVAVIAHELGHWKLNHTMY 181 (309)
Q Consensus 160 ~~El~aVlaHElgH~~~~h~~~ 181 (309)
-..++.|+.||++|+..+|...
T Consensus 162 l~A~a~i~~HEiaHv~~~h~~~ 183 (305)
T PRK09672 162 LCALAWILLHEIAHVEFQHSSL 183 (305)
T ss_pred HHHHHHHHHHHHHHHHhccccc
Confidence 4568999999999999998653
No 22
>PRK04351 hypothetical protein; Provisional
Probab=97.38 E-value=0.00061 Score=54.26 Aligned_cols=70 Identities=21% Similarity=0.470 Sum_probs=52.0
Q ss_pred CCchHHHHHHHHHHH-cCCCCCceEEEeCCCCCCCccEEEeccCCCceeeecHhHHhhcCChhHHHHHHHHHHhhh
Q 021688 100 PEGELREKIEKLASS-LKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHW 174 (309)
Q Consensus 100 ~~~~L~~~i~~l~~~-~g~~~~~i~v~~~~~~s~~~NA~~~G~~~~~~I~l~~~ll~~l~~~~El~aVlaHElgH~ 174 (309)
++.+|.+.++++++. ++.|.+.-...+..-+++ ..++. .+...|-++..+++.. +++++..||+||++|+
T Consensus 2 ~~~~l~~l~~~~s~~~F~~~f~~~v~~n~Rlrtt-gG~~~---l~~~~I~lnp~ll~~~-~~~~l~~vv~HElcH~ 72 (149)
T PRK04351 2 TNQELQRLVEEISLEYFGKPFRHQAYFNKRLRTT-GGRYL---LKDHHIEFNPKMLEEY-GLEELIGIIKHELCHY 72 (149)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCcEEEEeccchhh-hheee---cCCCeEEeCHHHHhhc-cHHHHHhhHHHHHHHH
Confidence 567899999999976 566655544455433332 23332 2478899999999988 8999999999999997
No 23
>COG2321 Predicted metalloprotease [General function prediction only]
Probab=97.03 E-value=0.0037 Score=53.76 Aligned_cols=73 Identities=22% Similarity=0.231 Sum_probs=47.9
Q ss_pred HHHHHHHHHcCCC--CCceEEEeCCCCCCCccEE-Eec---cCCCceeeecHhHHhhcC------ChhHHHHHHHHHHhh
Q 021688 106 EKIEKLASSLKFP--LKKLFVVDGSTRSSHSNAY-MYG---FFKNKRIVLYDTLIQQCK------NDEEIVAVIAHELGH 173 (309)
Q Consensus 106 ~~i~~l~~~~g~~--~~~i~v~~~~~~s~~~NA~-~~G---~~~~~~I~l~~~ll~~l~------~~~El~aVlaHElgH 173 (309)
+....+.++.|.. .|++.......++..-.|- ++| ++..+++++.....+.|+ .+=.-+.|+|||.||
T Consensus 98 d~W~~if~~~~~~Y~~Ptlvlf~~~v~t~CG~assasGPFYCP~D~kvYlDlsFf~~m~~~fga~GdfAqaYViAHEVGH 177 (295)
T COG2321 98 DTWMQIFQESGRTYQKPTLVLFSGQVRTGCGFASSASGPFYCPADTKVYLDLSFFDEMKTKFGASGDFAQAYVIAHEVGH 177 (295)
T ss_pred HHHHHHHHHhcccccCCeEEEecCccccCcCCCCcCCCCeecCCCceEEEehhHHHHHHHHhcCCccHHHHHHHHhhhhH
Confidence 3444555555543 5788888877666553322 223 234789999999888772 233578999999999
Q ss_pred hhcch
Q 021688 174 WKLNH 178 (309)
Q Consensus 174 ~~~~h 178 (309)
...+-
T Consensus 178 HVQnl 182 (295)
T COG2321 178 HVQNL 182 (295)
T ss_pred HHHHH
Confidence 87653
No 24
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=96.86 E-value=0.0025 Score=53.78 Aligned_cols=71 Identities=28% Similarity=0.338 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEeCCCCCCCccEEEecc-CCCceeeecHhHHhhcCChhHHHHHHHHHHhhhhcchHHH
Q 021688 103 ELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGF-FKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMY 181 (309)
Q Consensus 103 ~L~~~i~~l~~~~g~~~~~i~v~~~~~~s~~~NA~~~G~-~~~~~I~l~~~ll~~l~~~~El~aVlaHElgH~~~~h~~~ 181 (309)
.+.+.++..++++|++.+++.+-+... .+ |- ..++.|.++..|+. + +++-++.|+.||++|+.+.+.-.
T Consensus 113 ~l~~~~~~~~~~~~~~~~~i~ir~~ks------rW--Gsc~~~~~I~ln~~L~~-~-P~~~idYVvvHEL~Hl~~~nHs~ 182 (205)
T PF01863_consen 113 YLPERLKKYAKKLGLPPPKIKIRDMKS------RW--GSCSSKGNITLNWRLVM-A-PPEVIDYVVVHELCHLRHPNHSK 182 (205)
T ss_pred HHHHHHHHHHHHcCCCcceEEEeehhh------cc--ccCCCCCcEEeeccccc-C-CccHHHHHHHHHHHHhccCCCCH
Confidence 345566677888999988998877532 22 43 24788999988776 5 89999999999999998776655
Q ss_pred HH
Q 021688 182 SF 183 (309)
Q Consensus 182 ~~ 183 (309)
.+
T Consensus 183 ~F 184 (205)
T PF01863_consen 183 RF 184 (205)
T ss_pred HH
Confidence 54
No 25
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=96.80 E-value=0.26 Score=41.71 Aligned_cols=88 Identities=20% Similarity=0.241 Sum_probs=55.1
Q ss_pred HhhhHhhhhhccccccCCC--c-hHHHHHHHHHHHcCCCCCceEEEeCCCCCCCccEEEeccCCCceeeecHhHHhhcCC
Q 021688 83 TLYPVLIAPLFNKFTPLPE--G-ELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKN 159 (309)
Q Consensus 83 ~~~p~~i~~l~~~~~pl~~--~-~L~~~i~~l~~~~g~~~~~i~v~~~~~~s~~~NA~~~G~~~~~~I~l~~~ll~~l~~ 159 (309)
+....++...|+|+...+. + -=.+.-+++.++.|+..-+|..++++- +++.|. .+|.|-++++..+.-
T Consensus 15 ~~aq~~vk~~~~kYs~v~~~~g~TGae~Ar~iL~~~gl~~V~Ve~~~G~L-tDHYdP------~~k~vrLS~~vy~~~-- 85 (222)
T PF04298_consen 15 LWAQWWVKSTFKKYSQVRSSSGMTGAEVARHILDRNGLSDVRVERVPGEL-TDHYDP------RNKVVRLSEDVYNGR-- 85 (222)
T ss_pred HHHHHHHHHHHHhhCcCCCCCCCCHHHHHHHHHHHCCCCCeeEEEeCCCC-CCCcCC------CCCEEEeCCccCCCC--
Confidence 3333456666666654432 1 123456677889999755666665421 455443 478898999876542
Q ss_pred hhHHHHHHHHHHhhhhcchH
Q 021688 160 DEEIVAVIAHELGHWKLNHT 179 (309)
Q Consensus 160 ~~El~aVlaHElgH~~~~h~ 179 (309)
.=.-.+|-|||.||..++..
T Consensus 86 SiaAvaVAAHEvGHAiQ~a~ 105 (222)
T PF04298_consen 86 SIAAVAVAAHEVGHAIQHAE 105 (222)
T ss_pred CHHHHHHHHHHHhHHHhccc
Confidence 33345789999999987764
No 26
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=96.72 E-value=0.0041 Score=53.09 Aligned_cols=71 Identities=25% Similarity=0.273 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEeCCCCCCCccEEEeccC-CCceeeecHhHHhhcCChhHHHHHHHHHHhhhhcchHHH
Q 021688 103 ELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFF-KNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMY 181 (309)
Q Consensus 103 ~L~~~i~~l~~~~g~~~~~i~v~~~~~~s~~~NA~~~G~~-~~~~I~l~~~ll~~l~~~~El~aVlaHElgH~~~~h~~~ 181 (309)
.+...++..+++.|.+...+.+-+.+++. |-+ ..+.|.++.-+ ... +++.+..|++||++|++..+.-+
T Consensus 124 ~l~~~~~~~~~~l~~~~~~~~ik~~k~~W--------GScs~~~~i~~~~~l-~~~-p~~~i~YVvvHELaHLke~nHs~ 193 (223)
T COG1451 124 ILEIRLKEYAKKLGVPPRAIKLKNMKRRW--------GSCSKAGEIRFNWRL-VMA-PEEVIDYVVVHELAHLKEKNHSK 193 (223)
T ss_pred HHHHHHHHHHHHhCCCccceeeeecccee--------eeecCCCcEEeehhh-hcC-CHHHHHHHHHHHHHHHhhhhccH
Confidence 34455667777889987788887654322 222 34455555544 456 89999999999999999888766
Q ss_pred HH
Q 021688 182 SF 183 (309)
Q Consensus 182 ~~ 183 (309)
.+
T Consensus 194 ~F 195 (223)
T COG1451 194 RF 195 (223)
T ss_pred HH
Confidence 65
No 27
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=96.04 E-value=0.013 Score=46.76 Aligned_cols=33 Identities=24% Similarity=0.339 Sum_probs=29.9
Q ss_pred CceeeecHhHHhhcCChhHHHHHHHHHHhhhhcc
Q 021688 144 NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLN 177 (309)
Q Consensus 144 ~~~I~l~~~ll~~l~~~~El~aVlaHElgH~~~~ 177 (309)
...|.++..+++.. +++++..||.|||+|+...
T Consensus 41 ~~~I~ln~~l~~~~-~~~~l~~~l~HEm~H~~~~ 73 (146)
T smart00731 41 SAEIRLNPKLLTEN-GRDRLRETLLHELCHAALY 73 (146)
T ss_pred CCEEEeCHHHHhhc-cHHHHHhhHHHHHHHHHHH
Confidence 78899999999988 8999999999999998753
No 28
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=95.92 E-value=0.02 Score=40.44 Aligned_cols=62 Identities=21% Similarity=0.232 Sum_probs=41.6
Q ss_pred HHHHHcCCCCCceEEEeC-----CCCCCCccEEEeccCCCceeeecHhHHhhcCChhHHHHHHHHHHhhhhcc
Q 021688 110 KLASSLKFPLKKLFVVDG-----STRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLN 177 (309)
Q Consensus 110 ~l~~~~g~~~~~i~v~~~-----~~~s~~~NA~~~G~~~~~~I~l~~~ll~~l~~~~El~aVlaHElgH~~~~ 177 (309)
++....|.+..+|.+-.+ ..+.....||+. +..|++..+-.+ . +..+=..++|||++|+.++
T Consensus 9 ~~e~~~G~dl~~Vrvh~~~~a~~~~~~~~A~A~T~----G~~I~f~~g~~~-~-~s~~~~~llaHEl~Hv~Qq 75 (79)
T PF13699_consen 9 RLERAFGADLSDVRVHTGPAASRAAAALGARAFTV----GNDIYFAPGKYN-P-DSPEGRALLAHELAHVVQQ 75 (79)
T ss_pred HHHHHhCCCccceEEEeCCchhhhhhccCCeEEEE----CCEEEEcCCCcC-C-CCCCcchhHhHHHHHHHhh
Confidence 445577887778888765 222344666666 468888766443 2 4556678999999998764
No 29
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=95.60 E-value=0.039 Score=46.21 Aligned_cols=76 Identities=24% Similarity=0.165 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEeCCCCC--CCcc-EEEeccCCCceeeecHhHHhhcCChhHHHHHHHHHHhhhhcchH
Q 021688 103 ELREKIEKLASSLKFPLKKLFVVDGSTRS--SHSN-AYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHT 179 (309)
Q Consensus 103 ~L~~~i~~l~~~~g~~~~~i~v~~~~~~s--~~~N-A~~~G~~~~~~I~l~~~ll~~l~~~~El~aVlaHElgH~~~~h~ 179 (309)
.+.+.++++.+....+.-+|++...+... ...+ ....|.+..++|+++- +-... +.+++.+++|||+-|..+.+.
T Consensus 4 ~i~~~~~~~~~~~~~~~i~v~i~p~~~~~~~~~~~~g~~g~~~~~~~i~l~~-~~~~~-~~~~l~~~iaHE~hH~~r~~~ 81 (195)
T PF10026_consen 4 IIEEALEKSIELLPGPDIPVFIFPADPENPFLIPELGGKGGGAIPGYIFLFL-LPNDY-SLEELPALIAHEYHHNCRYEQ 81 (195)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEeccCCCcccccccCcccccCCCCEEEEEe-cCCcc-cHHHHHHHHHHHHHHHHHHhc
Confidence 45566777777776665566655542211 1111 1222233356777775 44455 889999999999999976554
Q ss_pred H
Q 021688 180 M 180 (309)
Q Consensus 180 ~ 180 (309)
.
T Consensus 82 ~ 82 (195)
T PF10026_consen 82 I 82 (195)
T ss_pred c
Confidence 3
No 30
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=95.46 E-value=0.075 Score=42.67 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=28.8
Q ss_pred eeeecHhHHhhcCChhHHHHHHHHHHhhhhcch
Q 021688 146 RIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNH 178 (309)
Q Consensus 146 ~I~l~~~ll~~l~~~~El~aVlaHElgH~~~~h 178 (309)
.|.++..+++.. +++++..+|.|||+|.....
T Consensus 44 ~I~ls~~~~~~~-~~~~~~~tL~HEm~H~~~~~ 75 (157)
T PF10263_consen 44 EIRLSPKLLDRN-PEEELIDTLLHEMAHAAAYV 75 (157)
T ss_pred EEEECHHHHHhh-HHHHHHHHHHHHHHHHHhhh
Confidence 799999999987 89999999999999987643
No 31
>PF13203 DUF2201_N: Putative metallopeptidase domain
Probab=94.96 E-value=0.039 Score=49.25 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=36.6
Q ss_pred CceeeecHhHHhhcCChhHHHHHHHHHHhhhhcchHHHHHH
Q 021688 144 NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFI 184 (309)
Q Consensus 144 ~~~I~l~~~ll~~l~~~~El~aVlaHElgH~~~~h~~~~~~ 184 (309)
+.+|+++...+..+ +.+|+.+|++||+-|+..+|..+.--
T Consensus 42 g~~l~~nP~~~~~l-~~~~~~~~l~HevlH~~~~H~~r~~~ 81 (292)
T PF13203_consen 42 GRRLYYNPEFLESL-SPEERVGLLLHEVLHCLLRHPWRRGG 81 (292)
T ss_pred CcEEEECcHHHhcC-CHHHHHHHHHHHHHHHHccchhhhcc
Confidence 55999999999999 99999999999999999999987764
No 32
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=94.59 E-value=0.082 Score=44.52 Aligned_cols=47 Identities=26% Similarity=0.254 Sum_probs=38.9
Q ss_pred CCccEEEeccCCCceeeecHhHHhhcCCh-----hHHHHHHHHHHhhhhcchH
Q 021688 132 SHSNAYMYGFFKNKRIVLYDTLIQQCKND-----EEIVAVIAHELGHWKLNHT 179 (309)
Q Consensus 132 ~~~NA~~~G~~~~~~I~l~~~ll~~l~~~-----~El~aVlaHElgH~~~~h~ 179 (309)
...-|++.|-...+.|.++...++.. +. +|+.+||-||+.|+.+++.
T Consensus 61 ~~gVA~t~gd~~~~~I~~S~~~i~~~-~~~~~~~~Ei~Gvl~HE~~H~~Q~~~ 112 (205)
T PF04450_consen 61 MDGVAYTSGDDDHKEIHFSARYIAKY-PADGDVRDEIIGVLYHEMVHCWQWDG 112 (205)
T ss_pred CCeeEEEecCCCccEEEEeHHHHhhc-ccccchHHHHHHHHHHHHHHHhhcCC
Confidence 35678888754578999999999887 43 5999999999999998776
No 33
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=94.06 E-value=0.1 Score=41.06 Aligned_cols=68 Identities=22% Similarity=0.319 Sum_probs=44.8
Q ss_pred CchHHHHHHHHHHHcCCC--CCceEEEeCCCCCCCccEEEeccCCCceeeecHhHHhhcCChhHHHHHHHHHHhhhh
Q 021688 101 EGELREKIEKLASSLKFP--LKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWK 175 (309)
Q Consensus 101 ~~~L~~~i~~l~~~~g~~--~~~i~v~~~~~~s~~~NA~~~G~~~~~~I~l~~~ll~~l~~~~El~aVlaHElgH~~ 175 (309)
+.+|.+.+++......-+ .|.+..-. ..+ +...||. . ...|-++.-++..- .+|.+..|+.||++|+.
T Consensus 4 ~~~L~~~~~~as~~~~r~~~~p~~~~n~-Rg~-taG~ayL---~-~~~I~lNP~ll~en-~~~f~~~vV~HELaHl~ 73 (156)
T COG3091 4 NRKLQQCVEQASLKFFRKFFRPKASYNQ-RGR-TAGGAYL---L-KSEIRLNPKLLEEN-GEDFIEQVVPHELAHLH 73 (156)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcceehhh-hhh-hcchhhc---c-ccccccCHHHHHHc-cHHHHHHHHHHHHHHHH
Confidence 346777777777766544 33443322 111 1123332 2 44899999999988 99999999999999975
No 34
>PRK04860 hypothetical protein; Provisional
Probab=93.72 E-value=0.2 Score=40.46 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=29.3
Q ss_pred CCceeeecHhHHhhcCChhHHHHHHHHHHhhhhc
Q 021688 143 KNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKL 176 (309)
Q Consensus 143 ~~~~I~l~~~ll~~l~~~~El~aVlaHElgH~~~ 176 (309)
....|-++..++..- +++++..||.||++|+.-
T Consensus 44 ~~~~I~~Np~ll~~~-~~~~l~~~v~HEl~H~~~ 76 (160)
T PRK04860 44 QSNEIRLNPVLLLEN-QQAFIDEVVPHELAHLLV 76 (160)
T ss_pred hcCCeeeCHHHHhhC-cHHHHHhHHHHHHHHHHH
Confidence 467899999999988 999999999999999763
No 35
>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57. The catalytic triad for proteases in this entry is HE-H-H, which in many members is in the sequence motif HEIGH [].
Probab=92.88 E-value=0.2 Score=42.12 Aligned_cols=34 Identities=35% Similarity=0.489 Sum_probs=25.6
Q ss_pred CceeeecHhHHhhcCChhHHHHHHHHHHhhhh-cchHH
Q 021688 144 NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWK-LNHTM 180 (309)
Q Consensus 144 ~~~I~l~~~ll~~l~~~~El~aVlaHElgH~~-~~h~~ 180 (309)
.+.|.|+ + ++.. +.+..+.|++|||||.. .||.-
T Consensus 117 ~~~I~I~-~-~~~~-~~~~~~hvi~HEiGH~IGfRHTD 151 (211)
T PF12388_consen 117 YKFIQIY-G-LSNY-SVNVIEHVITHEIGHCIGFRHTD 151 (211)
T ss_pred CceEEEE-e-cCCC-chhHHHHHHHHHhhhhccccccC
Confidence 5778883 3 3566 88899999999999975 35543
No 36
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=92.38 E-value=0.81 Score=41.37 Aligned_cols=18 Identities=28% Similarity=0.187 Sum_probs=15.2
Q ss_pred ChhHHHHHHHHHHhhhhc
Q 021688 159 NDEEIVAVIAHELGHWKL 176 (309)
Q Consensus 159 ~~~El~aVlaHElgH~~~ 176 (309)
.+-++-+.++||+||.+.
T Consensus 192 p~~~~P~T~~HElAHq~G 209 (318)
T PF12725_consen 192 PPYSLPFTICHELAHQLG 209 (318)
T ss_pred CcccccHHHHHHHHHHhC
Confidence 556789999999999874
No 37
>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism]
Probab=92.08 E-value=0.22 Score=42.18 Aligned_cols=31 Identities=29% Similarity=0.268 Sum_probs=24.4
Q ss_pred CceeeecHhHHhhcCChhHHHHHHHHHHhhhhcchH
Q 021688 144 NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHT 179 (309)
Q Consensus 144 ~~~I~l~~~ll~~l~~~~El~aVlaHElgH~~~~h~ 179 (309)
.+.|++.... +++.-.+++|||+||+..+..
T Consensus 58 ~~~I~iN~n~-----~~~r~rFtlAHELGH~llH~~ 88 (213)
T COG2856 58 KPVIYINANN-----SLERKRFTLAHELGHALLHTD 88 (213)
T ss_pred CceEEEeCCC-----CHHHHHHHHHHHHhHHHhccc
Confidence 3577777753 788899999999999875544
No 38
>PF02031 Peptidase_M7: Streptomyces extracellular neutral proteinase (M7) family; InterPro: IPR000013 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M7 (snapalysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. With a molecular weight of around 16kDa, Streptomyces extracellular neutral protease is one of the smallest known proteases []; it is capable of hydrolysing milk proteins []. The enzyme is synthesised as a proenzyme with a signal peptide, a propeptide and an active domain that contains the conserved HEXXH motif characteristic of metalloproteases. Although family M7 shows active site sequence similarity to other members, it differs in one major respect: the third zinc ligand appears to be an aspartate residue rather than the usual histidine.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 1C7K_A 1KUH_A.
Probab=92.03 E-value=0.24 Score=37.90 Aligned_cols=38 Identities=34% Similarity=0.229 Sum_probs=23.2
Q ss_pred CccEEEeccCCCceeeecHhHHhhcCChhHHHHHHHHHHhhhh
Q 021688 133 HSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWK 175 (309)
Q Consensus 133 ~~NA~~~G~~~~~~I~l~~~ll~~l~~~~El~aVlaHElgH~~ 175 (309)
..-|...|.+ +++|++...--+.. +. .+ |.+||+||+.
T Consensus 52 ~sya~~~g~G-~G~I~l~~~~~qgy-~~--~R-IaaHE~GHiL 89 (132)
T PF02031_consen 52 GSYASTDGLG-SGYIFLDYQQNQGY-NS--TR-IAAHELGHIL 89 (132)
T ss_dssp --EEEE-SSS--EEEEEEHHHHHHS--H--HH-HHHHHHHHHH
T ss_pred CcccccCCCC-cEEEEechHHhhCC-cc--ce-eeeehhcccc
Confidence 3446666766 77899976544444 33 33 8999999975
No 39
>COG4900 Predicted metallopeptidase [General function prediction only]
Probab=92.00 E-value=0.59 Score=34.72 Aligned_cols=72 Identities=26% Similarity=0.282 Sum_probs=47.0
Q ss_pred chHHHHHHHHHHHcCCC---CCceEEEeCCCCCCCccEEE--e----------ccCCCceeeecHhHHhhcCChhHHHHH
Q 021688 102 GELREKIEKLASSLKFP---LKKLFVVDGSTRSSHSNAYM--Y----------GFFKNKRIVLYDTLIQQCKNDEEIVAV 166 (309)
Q Consensus 102 ~~L~~~i~~l~~~~g~~---~~~i~v~~~~~~s~~~NA~~--~----------G~~~~~~I~l~~~ll~~l~~~~El~aV 166 (309)
++..+.++.+..+.|++ ..+++++-+.. ++.-|++ . |+.|.-.|-+-+.=++.| +.+|---|
T Consensus 7 ~dve~~~~~~V~~lgLdyi~~~rv~vVys~g--S~~~A~ARIwg~pki~~e~lglnP~YviEl~sekF~rL-s~~ekvKv 83 (133)
T COG4900 7 ADVEADIKNAVVRLGLDYIFQVRVVVVYSPG--SHSKAVARIWGIPKIFQEVLGLNPVYVIELLSEKFKRL-SCAEKVKV 83 (133)
T ss_pred ccHHHHHHHHHHHhCcceeeeeeEEEEECCC--CcceehhhhhcccHHHHHHhCCCCeeeeeeehhhcCCC-ChHHHHHH
Confidence 34556677777788886 35777775432 2333333 2 333444455555667788 99999999
Q ss_pred HHHHHhhhhc
Q 021688 167 IAHELGHWKL 176 (309)
Q Consensus 167 laHElgH~~~ 176 (309)
+.||+.|+-.
T Consensus 84 iiHEllHIP~ 93 (133)
T COG4900 84 IIHELLHIPA 93 (133)
T ss_pred HHHHHhcCcc
Confidence 9999999863
No 40
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=88.96 E-value=1.1 Score=37.20 Aligned_cols=74 Identities=18% Similarity=0.155 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHcCCCCCceEEEeCCCCCCCccEEEeccC--CCceeee--cHhHHhhcCChhHHHHHHHHHHhhhhcchH
Q 021688 104 LREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFF--KNKRIVL--YDTLIQQCKNDEEIVAVIAHELGHWKLNHT 179 (309)
Q Consensus 104 L~~~i~~l~~~~g~~~~~i~v~~~~~~s~~~NA~~~G~~--~~~~I~l--~~~ll~~l~~~~El~aVlaHElgH~~~~h~ 179 (309)
+.+.+..++++.++.++.+.-+.-. ..+ ..|.. .+..|.| -+.-...+.+-+++..|+.||++|..++..
T Consensus 25 lA~~v~pIM~~~~~~V~~L~E~~P~----~~~--llG~N~N~G~~I~lrLR~~~~~~fl~~~~i~~t~lHELaH~~~~~H 98 (186)
T PF08325_consen 25 LAADVKPIMRKHGWRVGSLEEFYPN----GER--LLGLNVNKGEKICLRLRTPDDGGFLPYETILGTMLHELAHNVHGPH 98 (186)
T ss_pred HHHHHHHHHHHcCcccCeeeccCCC----CCC--CcceecCCCcEEEEEeCCCCCCCEeeHHHHHHHHHHHHHhcccCCc
Confidence 4445666677778876655554421 111 44543 3444443 222113333789999999999999997665
Q ss_pred HHHH
Q 021688 180 MYSF 183 (309)
Q Consensus 180 ~~~~ 183 (309)
-..+
T Consensus 99 ~~~F 102 (186)
T PF08325_consen 99 DDKF 102 (186)
T ss_pred cHHH
Confidence 4443
No 41
>PRK06926 flagellar motor protein MotP; Reviewed
Probab=88.94 E-value=16 Score=32.29 Aligned_cols=35 Identities=17% Similarity=0.130 Sum_probs=27.9
Q ss_pred HHhhcCChhHHHHHHHHHHhhhhcchHHHHHHHHHH
Q 021688 153 LIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQV 188 (309)
Q Consensus 153 ll~~l~~~~El~aVlaHElgH~~~~h~~~~~~~~~~ 188 (309)
+.+.. ++++++.++-+|+.....+|..-.-.+...
T Consensus 120 vvDG~-~~~~i~~iLe~ei~~~~~r~~~~~~v~~~~ 154 (271)
T PRK06926 120 AIDGW-EPETIRDIMMAEIAAMEERHRKGRRIFEKA 154 (271)
T ss_pred HHCCC-CHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34566 999999999999999999988766655543
No 42
>COG2738 Predicted Zn-dependent protease [General function prediction only]
Probab=88.88 E-value=9.4 Score=31.63 Aligned_cols=67 Identities=19% Similarity=0.157 Sum_probs=39.2
Q ss_pred HHHHHHHHcCCCCCceEEEeCCCCCCCccEEEeccCCCceeeecHhHHhhcCChhHHHHHHHHHHhhhhcchHHHH
Q 021688 107 KIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYS 182 (309)
Q Consensus 107 ~i~~l~~~~g~~~~~i~v~~~~~~s~~~NA~~~G~~~~~~I~l~~~ll~~l~~~~El~aVlaHElgH~~~~h~~~~ 182 (309)
.-+.+.+..|+..-++-.+++.- |++.. ++++.+-+++.-...- |- .=.+|-|||.||-.+.+....
T Consensus 45 vAr~iLd~nGl~dV~Ve~v~G~L-TDHYD------P~~kvvrLSe~~y~g~-Si-a~~aVAAHEVGHAiQd~~~Y~ 111 (226)
T COG2738 45 VARMILDENGLYDVPVEEVPGTL-TDHYD------PRRKVVRLSEANYYGP-SI-AAIAVAAHEVGHAIQDQEDYA 111 (226)
T ss_pred HHHHHHhhcCCccceeeeecCCc-ccccC------hhhheeeccccccCCc-cH-HHHHHHHHHhhHHHhhhcccH
Confidence 34556677787644444444321 23321 2356666777765543 33 346899999999887665443
No 43
>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site.; InterPro: IPR001818 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M10 (clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Sequences having this domain are extracellular metalloproteases, such as collagenase and stromelysin, which degrade the extracellular matrix, are known as matrixins. They are zinc-dependent, calcium-activated proteases synthesised as inactive precursors (zymogens), which are proteolytically cleaved to yield the active enzyme [, ]. All matrixins and related proteins possess 2 domains: an N-terminal domain, and a zinc-binding active site domain. The N-terminal domain peptide, cleaved during the activation step, includes a conserved PRCGVPDV octapeptide, known as the cysteine switch, whose Cys residue chelates the active site zinc atom, rendering the enzyme inactive [, ]. The active enzyme degrades components of the extracellular matrix, playing a role in the initial steps of tissue remodelling during morphogenesis, wound healing, angiogenesis and tumour invasion [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0031012 extracellular matrix; PDB: 1Q3A_C 3V96_B 1HV5_D 1CXV_A 1SRP_A 1FBL_A 1ZVX_A 1JH1_A 1I76_A 2OY4_A ....
Probab=84.62 E-value=0.51 Score=37.49 Aligned_cols=17 Identities=29% Similarity=0.552 Sum_probs=14.9
Q ss_pred ChhHHHHHHHHHHhhhh
Q 021688 159 NDEEIVAVIAHELGHWK 175 (309)
Q Consensus 159 ~~~El~aVlaHElgH~~ 175 (309)
+..++..|+.||+||..
T Consensus 101 ~~~~~~~v~~HEiGHaL 117 (154)
T PF00413_consen 101 SGNDLQSVAIHEIGHAL 117 (154)
T ss_dssp SSEEHHHHHHHHHHHHT
T ss_pred hhhhhhhhhhhcccccc
Confidence 56689999999999984
No 44
>TIGR00181 pepF oligoendopeptidase F. This family represents the oligoendopeptidase F clade of the family of larger M3 or thimet (for thiol-dependent metallopeptidase) oligopeptidase family. Lactococcus lactis PepF hydrolyzed peptides of 7 and 17 amino acids with fairly broad specificity. The homolog of lactococcal PepF in group B Streptococcus was named PepB (PubMed:8757883), with the name difference reflecting a difference in species of origin rather activity; substrate profiles were quite similar. Differences in substrate specificity should be expected in other species. The gene is duplicated in Lactococcus lactis on the plasmid that bears it. A shortened second copy is found in Bacillus subtilis.
Probab=83.98 E-value=0.7 Score=45.57 Aligned_cols=47 Identities=26% Similarity=0.248 Sum_probs=29.2
Q ss_pred CCCCCCccEEEeccC-CCceeeecHhHHhhcCChhHHHHHHHHHHhhhhcchHH
Q 021688 128 STRSSHSNAYMYGFF-KNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTM 180 (309)
Q Consensus 128 ~~~s~~~NA~~~G~~-~~~~I~l~~~ll~~l~~~~El~aVlaHElgH~~~~h~~ 180 (309)
+++.....||++|++ +.+.|+++= -.+.++ ...||||+||.-|....
T Consensus 348 ~r~gK~~Ga~~~~~~~~~p~il~N~-----~~~~~d-v~TLaHElGHa~H~~~~ 395 (591)
T TIGR00181 348 ENKGKRSGAYSIGGYKVKPYILMNW-----DGTLNS-VFTLAHELGHSMHSYFS 395 (591)
T ss_pred CCCCCCCCcccCCCCCCCCeEEEec-----CCCcch-HHHHHHHhhhHHHHHHH
Confidence 344567789999986 345554431 112333 35799999999866543
No 45
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=83.36 E-value=18 Score=27.68 Aligned_cols=78 Identities=15% Similarity=0.053 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhhHhhhhhccccccCCCchHHHHH
Q 021688 29 TIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKI 108 (309)
Q Consensus 29 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~l~~~~~pl~~~~L~~~i 108 (309)
|..+...--..+.+.++++++|+..+. . ||..+.....+..++..++.+.++.++.+ -+| |.-++..+
T Consensus 22 T~~El~~~a~~~~~~g~~~gl~la~~~----g-----~~a~~pt~~ll~~~~~v~~gg~~l~rlKR-GKP--~~yl~r~l 89 (121)
T PF11990_consen 22 TADELGLAAGVGFVAGLVVGLPLALLT----G-----WWAMIPTGALLGPILGVFVGGKLLARLKR-GKP--EGYLYRRL 89 (121)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH----H-----HHHHHHHHHHHHHHHHHHHhHHHHHHHHc-CCc--hhHHHHHH
Confidence 344444444445555555544433222 1 23233333333344556666777776643 344 66899999
Q ss_pred HHHHHHcC-CC
Q 021688 109 EKLASSLK-FP 118 (309)
Q Consensus 109 ~~l~~~~g-~~ 118 (309)
+...++.| +.
T Consensus 90 ~~~l~~~g~l~ 100 (121)
T PF11990_consen 90 QWRLARRGPLG 100 (121)
T ss_pred HHHHHHhcccC
Confidence 98888876 44
No 46
>COG3590 PepO Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=82.95 E-value=0.36 Score=46.12 Aligned_cols=41 Identities=37% Similarity=0.440 Sum_probs=29.1
Q ss_pred CccEEEeccCCCceeeecHhHHhh--c--C-----ChhHHHHHHHHHHhhhh
Q 021688 133 HSNAYMYGFFKNKRIVLYDTLIQQ--C--K-----NDEEIVAVIAHELGHWK 175 (309)
Q Consensus 133 ~~NA~~~G~~~~~~I~l~~~ll~~--l--~-----~~~El~aVlaHElgH~~ 175 (309)
..|||.- +....||.+..+|+. . + |---|-|||||||||--
T Consensus 450 ~VNAYYn--p~~N~IVFPAAILQ~PFfd~ea~~a~NYGgIGaVIgHEI~HgF 499 (654)
T COG3590 450 TVNAYYN--PQKNEIVFPAAILQAPFFDPEADSAANYGGIGAVIGHEIGHGF 499 (654)
T ss_pred HhhhhcC--CCCceEeeeHHhcCCCCCCCCcchhhcccCccceehhhhcccc
Confidence 4899864 336778888888763 1 0 22249999999999964
No 47
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=82.91 E-value=0.76 Score=36.79 Aligned_cols=16 Identities=44% Similarity=0.615 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHhhhh
Q 021688 160 DEEIVAVIAHELGHWK 175 (309)
Q Consensus 160 ~~El~aVlaHElgH~~ 175 (309)
..++..|+.||+||..
T Consensus 101 ~~~~~~~~~HEiGHaL 116 (156)
T cd04279 101 AENLQAIALHELGHAL 116 (156)
T ss_pred chHHHHHHHHHhhhhh
Confidence 4689999999999976
No 48
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=82.86 E-value=1.8 Score=32.63 Aligned_cols=22 Identities=27% Similarity=0.432 Sum_probs=18.5
Q ss_pred ChhHHHHHHHHHHhhhhcchHH
Q 021688 159 NDEEIVAVIAHELGHWKLNHTM 180 (309)
Q Consensus 159 ~~~El~aVlaHElgH~~~~h~~ 180 (309)
+++.+..+++||++|....+..
T Consensus 21 ~~~~~~~~l~HE~~H~~~~~~~ 42 (128)
T PF13485_consen 21 DEDWLDRVLAHELAHQWFGNYF 42 (128)
T ss_pred CHHHHHHHHHHHHHHHHHHHHc
Confidence 7788899999999998766654
No 49
>TIGR02289 M3_not_pepF oligoendopeptidase, M3 family. This family consists of probable oligoendopeptidases in the M3 family, related to lactococcal PepF and group B streptococcal PepB (TIGR00181) but in a distinct clade with considerable sequence differences. The likely substrate is small peptides and not whole proteins, as with PepF, but members are not characterized and the activity profile may differ. Several bacteria have both a member of this family and a member of the PepF family.
Probab=82.81 E-value=0.96 Score=44.21 Aligned_cols=47 Identities=21% Similarity=0.166 Sum_probs=29.1
Q ss_pred CCCCCCccEEEeccCC--CceeeecHhHHhhcCChhHHHHHHHHHHhhhhcchHH
Q 021688 128 STRSSHSNAYMYGFFK--NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTM 180 (309)
Q Consensus 128 ~~~s~~~NA~~~G~~~--~~~I~l~~~ll~~l~~~~El~aVlaHElgH~~~~h~~ 180 (309)
+++...+.||++++++ .+.|+.+ .-. +.+++ .+|+||+||..|....
T Consensus 306 ~r~gK~~Gayc~~~~~~~~P~I~~N--f~~---t~~dv-~TL~HElGHa~H~~~s 354 (549)
T TIGR02289 306 SRKGKAAGGYCTYLPKYKAPFIFSN--FNG---TSGDI-DVLTHEAGHAFHVYES 354 (549)
T ss_pred CCCCCCCCcccCCCCCCCCcEEEEe--CCC---ChhHH-HHHHHHhhHHHHHHHh
Confidence 4445678999999764 3444433 111 33333 4689999999866543
No 50
>cd04270 ZnMc_TACE_like Zinc-dependent metalloprotease; TACE_like subfamily. TACE, the tumor-necrosis factor-alpha converting enzyme, releases soluble TNF-alpha from transmembrane pro-TNF-alpha.
Probab=81.74 E-value=0.9 Score=39.45 Aligned_cols=17 Identities=47% Similarity=0.374 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHhhhhc
Q 021688 160 DEEIVAVIAHELGHWKL 176 (309)
Q Consensus 160 ~~El~aVlaHElgH~~~ 176 (309)
+.+.+.++|||+||--.
T Consensus 164 ~~~~a~t~AHElGHnlG 180 (244)
T cd04270 164 TKESDLVTAHELGHNFG 180 (244)
T ss_pred hhHHHHHHHHHHHHhcC
Confidence 44578999999999765
No 51
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.62 E-value=1.3 Score=39.25 Aligned_cols=38 Identities=24% Similarity=0.339 Sum_probs=33.7
Q ss_pred CceeeecHhHHhhcCChhHHHHHHHHHHhhhhcchHHHH
Q 021688 144 NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYS 182 (309)
Q Consensus 144 ~~~I~l~~~ll~~l~~~~El~aVlaHElgH~~~~h~~~~ 182 (309)
.-++..+......+ +.+++.|.|-||+-|+..+|+.+.
T Consensus 51 ~~~~y~NPei~~~~-p~~~~~aLl~HEV~Hi~l~Hi~r~ 88 (396)
T COG3864 51 YFTMYFNPEIFLNC-PISEMKALLKHEVYHIMLNHIKRA 88 (396)
T ss_pred ceEEEeCHHHHccC-CHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56788888899999 999999999999999999998543
No 52
>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.
Probab=80.13 E-value=0.94 Score=36.41 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=20.5
Q ss_pred CceeeecHhHHh----hcCChhHHHHHHHHHHhhhh
Q 021688 144 NKRIVLYDTLIQ----QCKNDEEIVAVIAHELGHWK 175 (309)
Q Consensus 144 ~~~I~l~~~ll~----~l~~~~El~aVlaHElgH~~ 175 (309)
++.|.+.+.-+. .. +.++..++++||+||..
T Consensus 72 ~g~i~~~~~~~~~~~~~~-~~~~~~~~~~HEiGHaL 106 (165)
T cd04268 72 TGEILLARVYLYSSFVEY-SGARLRNTAEHELGHAL 106 (165)
T ss_pred CccEEeeEEEEchhHHHH-HHHHHHHHHHHHHHHHh
Confidence 455655554322 12 35679999999999975
No 53
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=79.19 E-value=25 Score=26.49 Aligned_cols=79 Identities=20% Similarity=0.131 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhhHhhhhhccccccCCCchHHHHH
Q 021688 29 TIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKI 108 (309)
Q Consensus 29 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~l~~~~~pl~~~~L~~~i 108 (309)
|-.++..--..+.+..+++++|+.. +.. .|.......+ +..++..++.+.++.++.+. + +|.-++.++
T Consensus 19 T~~El~~~~~~~~~~gl~~g~~l~~----~~~----~w~~~p~~~l-ig~~l~v~~gg~~l~rlKRG-r--Pe~yl~r~l 86 (111)
T TIGR03750 19 TADELGVAAGVGLAAGLVLGLLLAL----LAG----PWALIPTGAL-LGPILVVLIGGKLLARLKRG-K--PEGYLYRKL 86 (111)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH----HHH----HHHHHHHHHH-HHHHHHHHHhHHHHHHHHcC-C--CchHHHHHH
Confidence 4445555555555555555554322 221 2222222222 22345567777777776543 4 478899999
Q ss_pred HHHHHHcCCCC
Q 021688 109 EKLASSLKFPL 119 (309)
Q Consensus 109 ~~l~~~~g~~~ 119 (309)
+....+.++..
T Consensus 87 ~~~~~~~~l~~ 97 (111)
T TIGR03750 87 EWKLARLGLGR 97 (111)
T ss_pred HHHHHHcCCCC
Confidence 99888888753
No 54
>PF09768 Peptidase_M76: Peptidase M76 family; InterPro: IPR019165 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. Mitochondrial inner membrane protease ATP23 has two roles in the assembly of mitochondrial ATPase. Firstly, it acts as a protease that removes the N-terminal 10 residues of mitochondrial ATPase CF(0) subunit 6 (ATP6) at the intermembrane space side. Secondly, it is involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of ATP6 with the subunit 9 ring [, ].; GO: 0004222 metalloendopeptidase activity
Probab=78.93 E-value=3.8 Score=33.50 Aligned_cols=65 Identities=25% Similarity=0.254 Sum_probs=41.2
Q ss_pred chHHHHHHHHHHHcCCC---CCceEEEeCCCCCCCccEEEeccCC-CceeeecHhHHhhcCChhHHHHHHHHHHhhhhc
Q 021688 102 GELREKIEKLASSLKFP---LKKLFVVDGSTRSSHSNAYMYGFFK-NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKL 176 (309)
Q Consensus 102 ~~L~~~i~~l~~~~g~~---~~~i~v~~~~~~s~~~NA~~~G~~~-~~~I~l~~~ll~~l~~~~El~aVlaHElgH~~~ 176 (309)
|.++-+++++.+ .|-+ ...+...+-+. + ...|+.+ .+.|+|-.+-+ .+.+++.-+|+|||-|...
T Consensus 16 p~v~fl~~~~~~-~gc~~~~~~~i~c~~C~~-----~-~~Ggf~p~~~~I~lC~N~~---~~~~~l~~~l~HELIHayD 84 (173)
T PF09768_consen 16 PTVRFLMEALKK-LGCPPVPPRHIKCEPCDS-----S-VSGGFDPSKKGIVLCQNRI---RSQGHLEDTLTHELIHAYD 84 (173)
T ss_pred cHHHHHHHHHHH-cCCCCCCCCCeEEEECcC-----C-CcCCccCCCCCEEEeeCCC---CCHHHHHHHHHHHHHHHHH
Confidence 455555555544 4433 33455554321 1 3335555 77888887754 3899999999999999763
No 55
>cd06459 M3B_Oligoendopeptidase_F Peptidase family M3B Oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and includes oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the PepF Bacillus amyloliquefaciens oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over expressed from a multicopy plasmid.
Probab=78.85 E-value=2.7 Score=39.47 Aligned_cols=48 Identities=25% Similarity=0.289 Sum_probs=27.9
Q ss_pred CCCCCCccEEEeccCCCceeeecHhHHhhcCChhHHHHHHHHHHhhhhcchH
Q 021688 128 STRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHT 179 (309)
Q Consensus 128 ~~~s~~~NA~~~G~~~~~~I~l~~~ll~~l~~~~El~aVlaHElgH~~~~h~ 179 (309)
+++.....||+.|+.+.+...|..+.-. +.++ ...++||+||..|...
T Consensus 191 ~r~gK~~gaf~~~~~~~~~p~i~~n~~~---~~~~-v~tl~HE~GHa~h~~~ 238 (427)
T cd06459 191 PRKGKRSGAYCTGLPPGKHPFILMNFNG---TLDD-VFTLAHELGHAFHSYL 238 (427)
T ss_pred CCCCCCCCeecCCCCCCCCCeEEecCCC---Chhh-HHHHHHHhhHHHHHHH
Confidence 3344567799998763333333333222 3344 4568999999765443
No 56
>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B ....
Probab=77.78 E-value=1.1 Score=37.26 Aligned_cols=17 Identities=29% Similarity=0.292 Sum_probs=13.8
Q ss_pred ChhHHHHHHHHHHhhhh
Q 021688 159 NDEEIVAVIAHELGHWK 175 (309)
Q Consensus 159 ~~~El~aVlaHElgH~~ 175 (309)
+...-.-++|||+||.-
T Consensus 138 ~~~~~~~~~AHEiGH~l 154 (196)
T PF13688_consen 138 PTYNGAITFAHEIGHNL 154 (196)
T ss_dssp -HHHHHHHHHHHHHHHT
T ss_pred CCCceehhhHHhHHHhc
Confidence 46778889999999965
No 57
>COG1164 Oligoendopeptidase F [Amino acid transport and metabolism]
Probab=77.38 E-value=1.3 Score=43.69 Aligned_cols=45 Identities=29% Similarity=0.367 Sum_probs=28.7
Q ss_pred CCCccEEEeccCCCceeeecHhHHhhcCChhHHHHHHHHHHhhhhcchH
Q 021688 131 SSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHT 179 (309)
Q Consensus 131 s~~~NA~~~G~~~~~~I~l~~~ll~~l~~~~El~aVlaHElgH~~~~h~ 179 (309)
...+.||+.|..++....|--+.... .+. ..+|+||+||..|...
T Consensus 352 gKrsGaYs~~~~~~~~p~IlmN~~gt---~~d-V~TLaHElGHs~Hs~~ 396 (598)
T COG1164 352 GKRSGAYSIGFYKGDHPFILMNYDGT---LRD-VFTLAHELGHSVHSYF 396 (598)
T ss_pred CCCCCcccCCCCCCCCCeEEEeCCCc---hhH-HHHHHHHccHHHHHHH
Confidence 46789999997643444443333322 222 3679999999887644
No 58
>PF01431 Peptidase_M13: Peptidase family M13 This is family M13 in the peptidase classification. ; InterPro: IPR018497 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M13 (neprilysin family, clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. M13 peptidases are well-studied proteases found in a wide range of organisms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk [, ]. The family includes eukaryotic and prokaryotic oligopeptidases, as well as some of the proteins responsible for the molecular basis of the blood group antigens e.g. Kell []. Neprilysin (3.4.24.11 from EC), is another member of this group, it is variously known as common acute lymphoblastic leukemia antigen (CALLA), enkephalinase (gp100) and neutral endopeptidase metalloendopeptidase (NEP). It is a plasma membrane-bound mammalian enzyme that is able to digest biologically-active peptides, including enkephalins []. The zinc ligands of neprilysin are known and are analogous to those in thermolysin, a related peptidase [, ]. Neprilysins, like thermolysin, are inhibited by phosphoramidon, which appears to selectively inhibit this family in mammals. The enzymes are all oligopeptidases, digesting oligo- and polypeptides, but not proteins []. Neprilysin consists of a short cytoplasmic domain, a membrane-spanning region and a large extracellular domain. The cytoplasmic domain contains a conformationally-restrained octapeptide, which is thought to act as a stop transfer sequence that prevents proteolysis and secretion [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QPJ_A 1R1I_A 1R1J_A 1Y8J_A 1R1H_A 1DMT_A 2YB9_A 3DWB_A 3ZUK_A.
Probab=77.06 E-value=2 Score=36.00 Aligned_cols=36 Identities=25% Similarity=0.196 Sum_probs=25.3
Q ss_pred CCceeeecHhHHhh----------cCChhHHHHHHHHHHhhhhcchH
Q 021688 143 KNKRIVLYDTLIQQ----------CKNDEEIVAVIAHELGHWKLNHT 179 (309)
Q Consensus 143 ~~~~I~l~~~ll~~----------l~~~~El~aVlaHElgH~~~~h~ 179 (309)
...+|+|+.+++.. + +-.-+-+||||||.|.-..+.
T Consensus 7 ~~N~i~ip~~~l~~P~f~~~~p~~~-~yg~lG~ilahel~hafd~~g 52 (206)
T PF01431_consen 7 RFNSIVIPAGILQPPFFDPNYPPAL-NYGGLGFILAHELMHAFDPEG 52 (206)
T ss_dssp TTTEEEEEGGGSSTTT--TTS-HHH-HHHTHHHHHHHHHHHCTSTTG
T ss_pred ccCEEEecHHHhCCccCCCCCCHHH-HHHHHHHHHHHHHHHHHHHhH
Confidence 36778888876652 1 224588999999999875543
No 59
>PF14247 DUF4344: Domain of unknown function (DUF4344)
Probab=76.85 E-value=8.7 Score=32.74 Aligned_cols=63 Identities=17% Similarity=0.267 Sum_probs=36.9
Q ss_pred HHHHHHHHcCCCCCceEEEeCCCCCCCccEEEeccCCCceeeecHhHHhhcC--------C--------hhHHHHHHHHH
Q 021688 107 KIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCK--------N--------DEEIVAVIAHE 170 (309)
Q Consensus 107 ~i~~l~~~~g~~~~~i~v~~~~~~s~~~NA~~~G~~~~~~I~l~~~ll~~l~--------~--------~~El~aVlaHE 170 (309)
.++.+-+.+.+|.+ +.+.-.+ ....|||.- +..+.|.+.-.+++... + .+-+.+++.||
T Consensus 25 ~~~~in~~f~LP~~-l~i~~~~--CGe~nA~yd--Pe~~~I~iCYEf~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~HE 99 (220)
T PF14247_consen 25 VADLINDYFPLPRD-LTIRFAE--CGEDNAFYD--PENRSITICYEFVDEILDRFAKANDPDEEYGQAAIGNVLFTLYHE 99 (220)
T ss_pred HHHHHhhcCCCCCC-eEEEEee--cCCCCCccC--CCCCEEEECHHHHHHHHHHHHhCCcCcchHHHHHHHHHHHHHHHH
Confidence 33444445566644 3332211 256899854 34788888877665311 1 23467899999
Q ss_pred Hhhh
Q 021688 171 LGHW 174 (309)
Q Consensus 171 lgH~ 174 (309)
+||.
T Consensus 100 ~GHA 103 (220)
T PF14247_consen 100 LGHA 103 (220)
T ss_pred HHHH
Confidence 9994
No 60
>PF13582 Reprolysin_3: Metallo-peptidase family M12B Reprolysin-like; PDB: 3P24_C.
Probab=76.66 E-value=1.3 Score=33.79 Aligned_cols=12 Identities=50% Similarity=0.717 Sum_probs=10.4
Q ss_pred HHHHHHHHhhhh
Q 021688 164 VAVIAHELGHWK 175 (309)
Q Consensus 164 ~aVlaHElgH~~ 175 (309)
..+++||+||.-
T Consensus 108 ~~~~~HEiGH~l 119 (124)
T PF13582_consen 108 VDTFAHEIGHNL 119 (124)
T ss_dssp TTHHHHHHHHHT
T ss_pred ceEeeehhhHhc
Confidence 489999999964
No 61
>PF01432 Peptidase_M3: Peptidase family M3 This Prosite motif covers only the active site. This family belongs to family M3 of the peptidase classification.; InterPro: IPR001567 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M3 (clan MA(E)), subfamilies M3A and M3B. The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. The Thimet oligopeptidase family, is a large family of archaeal, bacterial and eukaryotic oligopeptidases that cleave medium sized peptides. The group contains: mitochondrial intermediate peptidase (3.4.24.59 from EC) Neurolysin, mitochondrial precursor, (3.4.24.16 from EC) Thimet oligopeptidase (3.4.24.15 from EC) Dipeptidyl carboxypeptidase (3.4.15.5 from EC) Oligopeptidase A (3.4.24.70 from EC) Oligoendopeptidase F ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QR4_B 3CE2_A 1Y79_1 2H1J_A 2H1N_A 2O36_A 1S4B_P 2O3E_A 1I1I_P.
Probab=76.50 E-value=2.7 Score=39.96 Aligned_cols=55 Identities=11% Similarity=0.208 Sum_probs=30.8
Q ss_pred ceEEEeCCCCCCCccEEEeccCCC--------ceeeecHhHHh-------hcCChhHHHHHHHHHHhhhhcc
Q 021688 121 KLFVVDGSTRSSHSNAYMYGFFKN--------KRIVLYDTLIQ-------QCKNDEEIVAVIAHELGHWKLN 177 (309)
Q Consensus 121 ~i~v~~~~~~s~~~NA~~~G~~~~--------~~I~l~~~ll~-------~l~~~~El~aVlaHElgH~~~~ 177 (309)
.+|+---+++.....|+++++.++ +..+|.-+.-. .+ +.+++ ..|+||+||.-|.
T Consensus 187 ~~ylDl~~R~gK~~ga~~~~~~~~~~~~~~~~~~~~i~~n~~~~~~~~~~ll-~~~~v-~tLfHE~GHa~H~ 256 (458)
T PF01432_consen 187 YIYLDLYPRPGKRSGAFCFTLRPSRSDGERQLPVPYIFCNFTGPSAGKPSLL-SHDDV-ETLFHEFGHAMHS 256 (458)
T ss_dssp EEEEEES--TTS-SS-EEEEEEC-BTTSTCECEEEEEEEEE-S-BTTC--B--SHHHH-HHHHHHHHHHHHH
T ss_pred cccccchhcCCCCCCceeCCccCccccccCCCCceEEEecCCCCCCCCCCcc-ChhhH-HHHHHHHhHHHHH
Confidence 344444455556688999887654 45555544333 23 55677 6799999997753
No 62
>PF14891 Peptidase_M91: Effector protein
Probab=76.43 E-value=9.2 Score=31.24 Aligned_cols=16 Identities=31% Similarity=0.146 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHhhhhc
Q 021688 161 EEIVAVIAHELGHWKL 176 (309)
Q Consensus 161 ~El~aVlaHElgH~~~ 176 (309)
..=..+|+|||+|..+
T Consensus 101 ~~p~v~L~HEL~HA~~ 116 (174)
T PF14891_consen 101 RPPFVVLYHELIHAYD 116 (174)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3457899999999763
No 63
>COG3824 Predicted Zn-dependent protease [General function prediction only]
Probab=75.58 E-value=2.4 Score=32.02 Aligned_cols=30 Identities=33% Similarity=0.677 Sum_probs=22.8
Q ss_pred ceeeecHh-HHhhcCCh------hHHHHHHHHHHhhhh
Q 021688 145 KRIVLYDT-LIQQCKND------EEIVAVIAHELGHWK 175 (309)
Q Consensus 145 ~~I~l~~~-ll~~l~~~------~El~aVlaHElgH~~ 175 (309)
.+|.++.. +++.. ++ |++.-|+-||+||.-
T Consensus 85 ~rItlYRrailDyw-ae~eetlgd~vthvliHEIgHhF 121 (136)
T COG3824 85 DRITLYRRALLDYW-AENEETLGDQVTHVLIHEIGHHF 121 (136)
T ss_pred ceeeeeHHHHHHHH-hhhhhhHhhHhhhhhhhhhhhhc
Confidence 57888877 66776 44 458889999999964
No 64
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=75.14 E-value=1.4 Score=35.97 Aligned_cols=14 Identities=43% Similarity=0.446 Sum_probs=10.6
Q ss_pred HHHHHHHHHhhhhc
Q 021688 163 IVAVIAHELGHWKL 176 (309)
Q Consensus 163 l~aVlaHElgH~~~ 176 (309)
-.-++|||+||.-.
T Consensus 111 ~~~~~aHElGH~lG 124 (173)
T PF13574_consen 111 GIDTFAHELGHQLG 124 (173)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred eeeeehhhhHhhcC
Confidence 34559999999763
No 65
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily. Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=74.87 E-value=1.9 Score=35.78 Aligned_cols=40 Identities=25% Similarity=0.168 Sum_probs=23.4
Q ss_pred CccEEEeccCC-CceeeecHhHHhhcCChhHHHHHHHHHHhhhh
Q 021688 133 HSNAYMYGFFK-NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWK 175 (309)
Q Consensus 133 ~~NA~~~G~~~-~~~I~l~~~ll~~l~~~~El~aVlaHElgH~~ 175 (309)
..-|+..|.+. .....+.... .- +....+.++|||+||.-
T Consensus 103 ~G~A~~g~iC~~~~~~~v~~~~--~~-~~~~~a~~~AHElGH~l 143 (194)
T cd04269 103 VGLAYVGGMCSPKYSGGVVQDH--SR-NLLLFAVTMAHELGHNL 143 (194)
T ss_pred eeeeecCCccCCCcceEEEEeC--Cc-chHHHHHHHHHHHHhhc
Confidence 34566656653 3333333211 10 24677899999999986
No 66
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=73.98 E-value=3.9 Score=32.61 Aligned_cols=40 Identities=33% Similarity=0.277 Sum_probs=21.7
Q ss_pred CCccEEEeccCCCceeeecHhHHhhcCChhHHHHHHHHHHhhhh
Q 021688 132 SHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWK 175 (309)
Q Consensus 132 ~~~NA~~~G~~~~~~I~l~~~ll~~l~~~~El~aVlaHElgH~~ 175 (309)
.-.|||--| ..++..+|--..+.+-..=.=|+|||++|-.
T Consensus 108 ~~~NAfW~g----~~m~yGdG~~~~f~~~~~~lDVvaHEltHGV 147 (150)
T PF01447_consen 108 NYNNAFWNG----SQMVYGDGDGQIFKPFASSLDVVAHELTHGV 147 (150)
T ss_dssp STT-EEE-S----SSEEEE---SSSBS-GGG-HHHHHHHHHHHH
T ss_pred CccCccccC----CEEEEECCCCcccccCccccceeeecccccc
Confidence 568999764 5788888744333111221349999999964
No 67
>cd06455 M3A_TOP Peptidase M3 Thimet oligopeptidase (TOP; PZ-peptidase; endo-oligopeptidase A; endopeptidase 24.15; soluble metallo-endopeptidase; EC 3.4.24.15) family also includes neurolysin (endopeptidase 24.16, microsomal endopeptidase, mitochondrial oligopeptidase M, neurotensin endopeptidase, soluble angiotensin II-binding protein, thimet oligopeptidase II) which hydrolyzes oligopeptides such as neurotensin, bradykinin and dynorphin A. TOP and neurolysin are neuropeptidases expressed abundantly in the testis, but also found in the liver, lung and kidney. They are involved in the metabolism of neuropeptides under 20 amino acid residues long and cleave most bioactive peptides at the same sites, but recognize different positions on some naturally occurring and synthetic peptides; they cleave at distinct sites on the 13-residue bioactive peptide neurotensin, which modulates central dopaminergic and cholinergic circuits. TOP has been shown to degrade peptides released by the proteasom
Probab=73.85 E-value=5.5 Score=38.16 Aligned_cols=49 Identities=16% Similarity=0.194 Sum_probs=27.4
Q ss_pred CCCCCCccEEEeccCCCce----------eeecHhHHhh-------cCChhHHHHHHHHHHhhhhcch
Q 021688 128 STRSSHSNAYMYGFFKNKR----------IVLYDTLIQQ-------CKNDEEIVAVIAHELGHWKLNH 178 (309)
Q Consensus 128 ~~~s~~~NA~~~G~~~~~~----------I~l~~~ll~~-------l~~~~El~aVlaHElgH~~~~h 178 (309)
++.....+|++.++.+.+. .+|.-+.-.. | +-+++ ..|+||+||..|.-
T Consensus 213 ~R~gK~~Ga~~~~~~~~~~~~~g~~~~P~~~i~~Nf~~~~~~~p~ll-~~~~V-~TLfHEfGHalH~~ 278 (472)
T cd06455 213 PREGKYGHAANFGLQPGFLLPDGSRQYPVAALVCNFPKPTADKPSLL-RHDEV-ETFFHEFGHVIHHL 278 (472)
T ss_pred CCCCCCCCccccccccceecCCCCEeCCEEEEECcCCCCCCCCCCCC-CHHHH-HHHHHHHHHHHHHH
Confidence 3345567888887653321 2332222111 2 24565 45899999988744
No 68
>PRK08456 flagellar motor protein MotA; Validated
Probab=73.64 E-value=62 Score=28.30 Aligned_cols=71 Identities=13% Similarity=0.120 Sum_probs=40.4
Q ss_pred cCCCchHHHHHHHHHHHcCCCCCceEEEeCCCCCCCccEEEeccCCCceeeecHhH---HhhcCChhHHHHHHHHHHhhh
Q 021688 98 PLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTL---IQQCKNDEEIVAVIAHELGHW 174 (309)
Q Consensus 98 pl~~~~L~~~i~~l~~~~g~~~~~i~v~~~~~~s~~~NA~~~G~~~~~~I~l~~~l---l~~l~~~~El~aVlaHElgH~ 174 (309)
..+..++.+.+.+++++...+ ...-.++..++. .+. ++.+++ .+.. ++++++.++-.|+...
T Consensus 71 ~~~~~~li~~l~~l~~~~r~~--g~laLe~~~~~~-~~~-----------fl~~gL~~~~~g~-~~~~i~~~le~ei~~~ 135 (257)
T PRK08456 71 GVNLNERIKQLVELATLARKD--GVLALEGRVAQI-EDE-----------FLKNGLSMLVDGK-DLEEIKESMEIQIEEM 135 (257)
T ss_pred CCCHHHHHHHHHHHHHHhhhh--hHHHHhhcccCc-HHH-----------HHHHHHHHhhcCC-CHHHHHHHHHHHHHHH
Confidence 334567777788887776543 222222111111 111 122332 2355 8999999999999988
Q ss_pred hcchHHHHH
Q 021688 175 KLNHTMYSF 183 (309)
Q Consensus 175 ~~~h~~~~~ 183 (309)
.++|....-
T Consensus 136 ~~~~~~~~~ 144 (257)
T PRK08456 136 EEYYHGAAH 144 (257)
T ss_pred HHHHHhHhH
Confidence 888764433
No 69
>PF06262 DUF1025: Possibl zinc metallo-peptidase; InterPro: IPR010428 This is a family of bacterial protein with undetermined function.; PDB: 3E11_A.
Probab=73.08 E-value=5.7 Score=29.13 Aligned_cols=36 Identities=31% Similarity=0.408 Sum_probs=23.3
Q ss_pred CceeeecHh-HHhhcCChh----HHHHHHHHHHhhhhcchH
Q 021688 144 NKRIVLYDT-LIQQCKNDE----EIVAVIAHELGHWKLNHT 179 (309)
Q Consensus 144 ~~~I~l~~~-ll~~l~~~~----El~aVlaHElgH~~~~h~ 179 (309)
..+|+++.. +...+.+++ ++.-++-||+||+-..+-
T Consensus 49 p~rI~lyR~pl~~~~~~~~eL~~~I~~tlvhEiah~fG~~~ 89 (97)
T PF06262_consen 49 PDRIVLYRRPLERRARSREELAELIRDTLVHEIAHHFGISD 89 (97)
T ss_dssp -EEEEEEHHHHHHT-SSHHHHHHHHHHHHHHHHHHHTT--H
T ss_pred CCEEEEehHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 367888877 556554554 467788899999876553
No 70
>cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate specification, cell migration, tissue repair, tumorigenesis, gain or loss of tissue-specific functions, and apoptosis. In many instances, they are anchored to cell membranes via trans-membrane domains, and their activity is controlled via TIMPs (tissue inhibitors of metalloproteinases).
Probab=72.71 E-value=2 Score=34.42 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=20.6
Q ss_pred CceeeecHhHHhhc---CChhHHHHHHHHHHhhhh
Q 021688 144 NKRIVLYDTLIQQC---KNDEEIVAVIAHELGHWK 175 (309)
Q Consensus 144 ~~~I~l~~~ll~~l---~~~~El~aVlaHElgH~~ 175 (309)
.+.|.+.+.-.-.. .+...+..|+.||+||..
T Consensus 85 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~HEiGHaL 119 (157)
T cd04278 85 GGDIHFDDDEQWTLGSDSGGTDLFSVAAHEIGHAL 119 (157)
T ss_pred ceeEEECCCcccccCCCCccchHHHHHHHHhcccc
Confidence 55666665422121 034569999999999974
No 71
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=72.07 E-value=3.7 Score=35.63 Aligned_cols=36 Identities=31% Similarity=0.397 Sum_probs=26.2
Q ss_pred cHhHHhhc--CChhHHHHHHHHHHhhhh---cchHHHHHHH
Q 021688 150 YDTLIQQC--KNDEEIVAVIAHELGHWK---LNHTMYSFIA 185 (309)
Q Consensus 150 ~~~ll~~l--~~~~El~aVlaHElgH~~---~~h~~~~~~~ 185 (309)
.|.+++.+ +++.+++..|-||++|-| ++|...+-.+
T Consensus 182 dDPlLstmlr~dd~~lA~LIFHELAHQk~Y~~~DtAFNEsF 222 (376)
T COG4324 182 DDPLLSTMLRQDDTYLASLIFHELAHQKIYVNNDTAFNESF 222 (376)
T ss_pred ccHHHHHHhcCChHHHHHHHHHHHhhheEeecCcchHhHHH
Confidence 34455533 288999999999999976 6777766543
No 72
>cd06258 Peptidase_M3_like The peptidase M3-like family, also called neurolysin-like family, is part of the "zincins" metallopeptidases, and includes M3, M2 and M32 families of metallopeptidases. The M3 family is subdivided into two subfamilies: the widespread M3A, which comprises a number of high-molecular mass endo- and exopeptidases from bacteria, archaea, protozoa, fungi, plants and animals, and the small M3B, whose members are enzymes primarily from bacteria. Well-known mammalian/eukaryotic M3A endopeptidases are the thimet oligopeptidase (TOP; endopeptidase 3.4.24.15), neurolysin (alias endopeptidase 3.4.24.16), and the mitochondrial intermediate peptidase. The first two are intracellular oligopeptidases, which act only on relatively short substrates of less than 20 amino acid residues, while the latter cleaves N-terminal octapeptides from proteins during their import into the mitochondria. The M3A subfamily also contains several bacterial endopeptidases, collectively called olig
Probab=71.71 E-value=6.2 Score=36.24 Aligned_cols=47 Identities=15% Similarity=0.246 Sum_probs=29.3
Q ss_pred CCCccEEEeccCC-----CceeeecHhHHhh-------cCChhHHHHHHHHHHhhhhcchH
Q 021688 131 SSHSNAYMYGFFK-----NKRIVLYDTLIQQ-------CKNDEEIVAVIAHELGHWKLNHT 179 (309)
Q Consensus 131 s~~~NA~~~G~~~-----~~~I~l~~~ll~~-------l~~~~El~aVlaHElgH~~~~h~ 179 (309)
.....|+++++.+ .+.+.|..+.-.. + +.+++. .+.||+||..+.-.
T Consensus 112 gK~~~a~~~~~~~~~~~~~~~~~i~~n~~~~~~~~~~ll-~~~~v~-tl~HE~GHa~h~~l 170 (365)
T cd06258 112 GKYPHGFCTGLDPGFNRQDKDVRILANFTSPAAPDPVLL-GHDDIN-TLFHEFGHAVHFLL 170 (365)
T ss_pred CCCCCCeeccccCCCCCCCCeEEEEccCCCCCCCCCCcC-CHHHHH-HHHHHHhHHHHHHH
Confidence 3557888887652 3555555544331 3 455554 48899999987543
No 73
>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site.; InterPro: IPR001590 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12B (adamalysin family, clan (MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The adamalysins are zinc dependent endopeptidases found in snake venom. There are some mammalian proteins such as P78325 from SWISSPROT, and fertilin Q28472 from SWISSPROT. Fertilin and closely related proteins appear to not have some active site residues and may not be active enzymes. CD156 (also called ADAM8 (3.4.24 from EC) or MS2 human) has been implicated in extravasation of leukocytes. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2E3X_A 2W15_A 2W14_A 2W13_A 2W12_A 1ND1_A 3K7L_A 2DW2_A 2DW0_B 2DW1_A ....
Probab=71.61 E-value=2.8 Score=34.92 Aligned_cols=17 Identities=41% Similarity=0.581 Sum_probs=14.9
Q ss_pred ChhHHHHHHHHHHhhhh
Q 021688 159 NDEEIVAVIAHELGHWK 175 (309)
Q Consensus 159 ~~~El~aVlaHElgH~~ 175 (309)
+....+.++|||+||.-
T Consensus 127 ~~~~~a~~~AHelGH~l 143 (199)
T PF01421_consen 127 SGLSFAVIIAHELGHNL 143 (199)
T ss_dssp SHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHhc
Confidence 67788999999999965
No 74
>PF05572 Peptidase_M43: Pregnancy-associated plasma protein-A; InterPro: IPR008754 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase M43 (cytophagalysin family, clan MA(M)), subfamily M43. The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example of this family is the pregnancy-associated plasma protein A (PAPP-A), which cleaves insulin-like growth factor (IGF) binding protein-4 (IGFBP-4), causing a dramatic reduction in its affinity for IGF-I and -II. Through this mechanism, PAPP-A is a regulator of IGF bioactivity in several systems, including the Homo sapiens ovary and the cardiovascular system [, , , ].; PDB: 3LUN_A 3LUM_B 2J83_A 2CKI_A.
Probab=71.60 E-value=2.1 Score=34.39 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=15.3
Q ss_pred ChhHHHHHHHHHHhhhhc-chHHHH
Q 021688 159 NDEEIVAVIAHELGHWKL-NHTMYS 182 (309)
Q Consensus 159 ~~~El~aVlaHElgH~~~-~h~~~~ 182 (309)
+.....-+++||+||+-. .|+...
T Consensus 65 ~~~~~g~TltHEvGH~LGL~HtF~~ 89 (154)
T PF05572_consen 65 SQYNFGKTLTHEVGHWLGLYHTFGG 89 (154)
T ss_dssp TTS-SSHHHHHHHHHHTT---TT--
T ss_pred CccccccchhhhhhhhhcccccccC
Confidence 566678999999999873 555543
No 75
>TIGR02290 M3_fam_3 oligoendopeptidase, pepF/M3 family. The M3 family of metallopeptidases contains several distinct clades. Oligoendopeptidase F as characterized in Lactococcus, the functionally equivalent oligoendopeptidase B of group B Streptococcus, and closely related sequences are described by TIGR00181. The present family is quite similar but forms a distinct clade, and a number of species have one member of each. A greater sequence difference separates members of TIGR02289, probable oligoendopeptidases of the M3 family that probably should not be designated PepF.
Probab=71.54 E-value=5.2 Score=39.46 Aligned_cols=42 Identities=24% Similarity=0.440 Sum_probs=25.9
Q ss_pred CCCccEEEeccCCC--ceeeecHhHHhhcCChhHHHHHHHHHHhhhhcch
Q 021688 131 SSHSNAYMYGFFKN--KRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNH 178 (309)
Q Consensus 131 s~~~NA~~~G~~~~--~~I~l~~~ll~~l~~~~El~aVlaHElgH~~~~h 178 (309)
.....||++|+.+. +.|+++ .-. +.+++ ..++||+||..|..
T Consensus 347 gK~~Ga~~~~~~~~~~p~i~~N--~~~---~~~~v-~TL~HE~GHa~H~~ 390 (587)
T TIGR02290 347 GKRGGAFCTGFPPSKEPRVLMN--YDG---SRRDV-STLAHELGHAYHSE 390 (587)
T ss_pred CCCCCcccCCCCCCCCCEEEEe--cCC---CchhH-HHHHHHhhHHHHHH
Confidence 45678999887532 444433 111 23333 45899999999854
No 76
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=71.29 E-value=23 Score=24.70 Aligned_cols=54 Identities=17% Similarity=0.158 Sum_probs=32.3
Q ss_pred CchHHHHH----HHHHHHcCCCCC---ceEEEeCCCCCCCccEEEeccCCCceeeecHhHHhhcCChhHHHHHHH
Q 021688 101 EGELREKI----EKLASSLKFPLK---KLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIA 168 (309)
Q Consensus 101 ~~~L~~~i----~~l~~~~g~~~~---~i~v~~~~~~s~~~NA~~~G~~~~~~I~l~~~ll~~l~~~~El~aVla 168 (309)
|++.++++ ...+++.|+..| ++.+++++ +. ..+++++..=-..+ |++||++|-+
T Consensus 16 Dp~Fr~~Ll~DPraaL~e~G~~~P~~~~i~VvE~t---~~----------~~~lVlP~~P~~~l-se~~L~~vag 76 (77)
T TIGR03793 16 DEAFKQALLTNPKEALEREGVQVPAEVEVKVVEES---PT----------VLYLVLPVNPDIEL-TDEQLDAVAG 76 (77)
T ss_pred CHHHHHHHHHCHHHHHHHhCCCCCCceEEEEEEcC---CC----------eEEEEecCCCCCCC-CHHHHHHhhC
Confidence 56666655 456667788755 68888853 22 22333322111178 9999999854
No 77
>PRK13267 archaemetzincin-like protein; Reviewed
Probab=71.12 E-value=14 Score=30.40 Aligned_cols=54 Identities=20% Similarity=0.310 Sum_probs=27.3
Q ss_pred ceEEEeCCCCCCCccEEEeccC-CC-ceeeecHhHHhhc----C-----ChhHHHHHHHHHHhhhh
Q 021688 121 KLFVVDGSTRSSHSNAYMYGFF-KN-KRIVLYDTLIQQC----K-----NDEEIVAVIAHELGHWK 175 (309)
Q Consensus 121 ~i~v~~~~~~s~~~NA~~~G~~-~~-~~I~l~~~ll~~l----~-----~~~El~aVlaHElgH~~ 175 (309)
-+.+.+.+-..+ ...|+.|.. ++ +.=+++..-++.- + -.+-+.-...||+||.-
T Consensus 73 vl~vt~~DLy~~-~~nfvfG~a~~~~~~aVvS~~Rl~~~~~~~~~~~~l~~~R~~k~~~HElGH~l 137 (179)
T PRK13267 73 NIGITDCDLYYR-GLNFVFGLAYPNLRGAVISTYRLRPEFYGNKPDSELFEERVRKEVTHELGHTL 137 (179)
T ss_pred EEEEEccccCCC-CCCceeEEeecCCCEEEEEccccChhhccccchHHHHHHHHHHHHHHHHHHHc
Confidence 455555443333 345888875 33 3334443322110 0 12234555899999984
No 78
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=69.85 E-value=8.5 Score=39.81 Aligned_cols=19 Identities=42% Similarity=0.359 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHhhhhcchH
Q 021688 161 EEIVAVIAHELGHWKLNHT 179 (309)
Q Consensus 161 ~El~aVlaHElgH~~~~h~ 179 (309)
+.+..|+|||++|--.++.
T Consensus 281 ~~i~~VIaHElaHqWfGNl 299 (863)
T TIGR02414 281 ERIESVIAHEYFHNWTGNR 299 (863)
T ss_pred HHHHHHHHHHHHHHHhcce
Confidence 4588999999999776654
No 79
>cd04267 ZnMc_ADAM_like Zinc-dependent metalloprotease, ADAM_like or reprolysin_like subgroup. The adamalysin_like or ADAM family of metalloproteases contains proteolytic domains from snake venoms, proteases from the mammalian reproductive tract, and the tumor necrosis factor alpha convertase, TACE. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=69.83 E-value=1.8 Score=35.80 Aligned_cols=16 Identities=38% Similarity=0.378 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHhhhh
Q 021688 160 DEEIVAVIAHELGHWK 175 (309)
Q Consensus 160 ~~El~aVlaHElgH~~ 175 (309)
..+...++|||+||.-
T Consensus 130 ~~~~~~~~aHElGH~l 145 (192)
T cd04267 130 TLLTALTMAHELGHNL 145 (192)
T ss_pred ceeehhhhhhhHHhhc
Confidence 4577889999999987
No 80
>cd06460 M32_Taq Peptidase family M32 is a subclass of metallocarboxypeptidases which are distributed mainly in bacteria and archaea, and contain a HEXXH motif that coordinates a divalent cation such as Zn2+ or Co2+, so far only observed in the active site of neutral metallopeptidases but not in carboxypeptidases. M32 includes the thermostable carboxypeptidases (E.C. 3.4.17.19) from Thermus aquaticus (TaqCP) and Pyrococcus furiosus (PfuCP), which have broad specificities toward a wide range of C-terminal substrates that include basic, aromatic, neutral and polar amino acids. These enzymes have a similar fold to the M3 peptidases such as neurolysin and the M2 angiotensin converting enzyme (ACE). Novel peptidases from protozoa Trypanosoma cruzi, a causative agent of Chagas' disease, and Leishmania major, a parasite that causes leishmaniasis, are the first eukaryotic M32 enzymes identified so far, thus making these enzymes an attractive potential target for drug development against these o
Probab=68.79 E-value=7.4 Score=36.33 Aligned_cols=62 Identities=16% Similarity=0.158 Sum_probs=38.1
Q ss_pred HHHHHHHHHHcCCCCCceEEEeCCCCCCCccEEEeccCCCceeeecHhHHhhcCChh-HHH--HHHHHHHhhhhcch
Q 021688 105 REKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDE-EIV--AVIAHELGHWKLNH 178 (309)
Q Consensus 105 ~~~i~~l~~~~g~~~~~i~v~~~~~~s~~~NA~~~G~~~~~~I~l~~~ll~~l~~~~-El~--aVlaHElgH~~~~h 178 (309)
++.-+++++.+|....+-.+ |.+ ++.|++|+++ ..+-|+... +++ =+. .-++||+||-.+..
T Consensus 110 ~~~~~~~~~~~g~df~~gri-D~s-----~hpF~~~~~~-~dvRItt~y-----~~~d~~~~l~t~iHE~GHalye~ 174 (396)
T cd06460 110 EALGRELLEALGFDFDRGRL-DVS-----AHPFTGGLGP-GDVRITTRY-----DENDFRSALFSTIHETGHALYEQ 174 (396)
T ss_pred HHHHHHHHHHhCCcccCCee-ecC-----CCCCCCCCCC-CCceEEeee-----CCcchHHHHHHHHHHhhHHHHHh
Confidence 34456788888988655444 432 4569888752 355554442 222 133 35789999988766
No 81
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=68.44 E-value=59 Score=25.90 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=21.8
Q ss_pred chHHHHHHHHHHHcCCCCCceEEEeC
Q 021688 102 GELREKIEKLASSLKFPLKKLFVVDG 127 (309)
Q Consensus 102 ~~L~~~i~~l~~~~g~~~~~i~v~~~ 127 (309)
+....-++.+++..+.+..++++-..
T Consensus 79 ~~~~~fi~~vA~~~~V~~~~v~VNst 104 (149)
T PF11694_consen 79 SQMVHFIESVAKDLGVSKEEVYVNST 104 (149)
T ss_pred HHHHHHHHHHHHHhCCChheEEEecc
Confidence 56777899999999999999998543
No 82
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=68.10 E-value=6.7 Score=37.75 Aligned_cols=50 Identities=28% Similarity=0.262 Sum_probs=33.4
Q ss_pred CceEEEeCCCCCCCccEEEeccCCCceeeecHhHHhhcCChhHHHHHHHHHHhhhhcchH
Q 021688 120 KKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHT 179 (309)
Q Consensus 120 ~~i~v~~~~~~s~~~NA~~~G~~~~~~I~l~~~ll~~l~~~~El~aVlaHElgH~~~~h~ 179 (309)
-++.+++.|.+. -|+-.-.-.+++.+++. .++.+.-|||||++|--.+..
T Consensus 255 yDllvlPpSFP~-------gGMENPcltF~TpTlla---GDrsl~~vIaHEIAHSWtGNl 304 (613)
T KOG1047|consen 255 YDLLVLPPSFPF-------GGMENPCLTFVTPTLLA---GDRSLVDVIAHEIAHSWTGNL 304 (613)
T ss_pred ceEEEecCCCCc-------ccccCcceeeecchhhc---CCcchhhHHHHHhhhhhcccc
Confidence 378888765321 24432234567777876 678889999999999765443
No 83
>cd04271 ZnMc_ADAM_fungal Zinc-dependent metalloprotease, ADAM_fungal subgroup. The adamalysin_like or ADAM (A Disintegrin And Metalloprotease) family of metalloproteases are integral membrane proteases acting on a variety of extracellular targets. They are involved in shedding soluble peptides or proteins from the cell surface. This subfamily contains fungal ADAMs, whose precise function has yet to be determined.
Probab=67.61 E-value=1.9 Score=37.00 Aligned_cols=12 Identities=50% Similarity=0.567 Sum_probs=10.3
Q ss_pred HHHHHHHhhhhc
Q 021688 165 AVIAHELGHWKL 176 (309)
Q Consensus 165 aVlaHElgH~~~ 176 (309)
.++|||+||.-.
T Consensus 147 ~t~AHElGHnLG 158 (228)
T cd04271 147 QVFAHEIGHTFG 158 (228)
T ss_pred eehhhhhhhhcC
Confidence 589999999873
No 84
>PRK08156 type III secretion system protein SpaS; Validated
Probab=67.32 E-value=1.1e+02 Score=28.39 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=20.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 021688 25 FNKQTIWLFFRDMIKGMILAIVLGPPI 51 (309)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~l~~~~ 51 (309)
||.++..++++..+|..+++.+....+
T Consensus 126 FS~~~lvel~KsllKv~li~~v~~~~~ 152 (361)
T PRK08156 126 FSLRTVKEFVKALLYLIVFALTAYVFW 152 (361)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888877766655443
No 85
>cd00203 ZnMc Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease.
Probab=66.75 E-value=2.5 Score=33.89 Aligned_cols=16 Identities=50% Similarity=0.565 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHhhhh
Q 021688 160 DEEIVAVIAHELGHWK 175 (309)
Q Consensus 160 ~~El~aVlaHElgH~~ 175 (309)
..+...+++||+||..
T Consensus 93 ~~~~~~~~~HElGH~L 108 (167)
T cd00203 93 TKEGAQTIAHELGHAL 108 (167)
T ss_pred cccchhhHHHHHHHHh
Confidence 4578999999999976
No 86
>PF13583 Reprolysin_4: Metallo-peptidase family M12B Reprolysin-like
Probab=66.10 E-value=2.8 Score=35.33 Aligned_cols=15 Identities=33% Similarity=0.390 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHhhhhc
Q 021688 161 EEIVAVIAHELGHWKL 176 (309)
Q Consensus 161 ~El~aVlaHElgH~~~ 176 (309)
.+. -+++||+||.-.
T Consensus 136 ~~~-~~~aHEiGH~lG 150 (206)
T PF13583_consen 136 NGY-QTFAHEIGHNLG 150 (206)
T ss_pred ccc-hHHHHHHHHHhc
Confidence 344 449999999763
No 87
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=65.86 E-value=99 Score=28.51 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 021688 25 FNKQTIWLFFRDMIKGMILAIVLGPPIVS 53 (309)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 53 (309)
||-+++.++++..+|..+++.+....+-.
T Consensus 138 Fs~~~~vEllKsllKi~~v~~v~~~~l~~ 166 (363)
T COG1377 138 FSLQTLVELLKSLLKIVLVGLVAYFVLKN 166 (363)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67888899999999888877666554433
No 88
>PRK14015 pepN aminopeptidase N; Provisional
Probab=65.77 E-value=11 Score=39.09 Aligned_cols=19 Identities=37% Similarity=0.324 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhhhhcchHH
Q 021688 162 EIVAVIAHELGHWKLNHTM 180 (309)
Q Consensus 162 El~aVlaHElgH~~~~h~~ 180 (309)
.+..|+|||++|--.++..
T Consensus 295 ~i~~vIaHElaHqWFGNlV 313 (875)
T PRK14015 295 RIESVIAHEYFHNWTGNRV 313 (875)
T ss_pred HHHHHHHHHHHHHHHhCcc
Confidence 4889999999998766543
No 89
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=65.70 E-value=3.4 Score=35.13 Aligned_cols=14 Identities=36% Similarity=0.344 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhhhh
Q 021688 162 EIVAVIAHELGHWK 175 (309)
Q Consensus 162 El~aVlaHElgH~~ 175 (309)
.-..++|||+||.-
T Consensus 144 ~~~~~~AHElGH~l 157 (220)
T cd04272 144 YGVYTMTHELAHLL 157 (220)
T ss_pred ccHHHHHHHHHHHh
Confidence 55899999999976
No 90
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=65.48 E-value=24 Score=35.76 Aligned_cols=53 Identities=15% Similarity=0.334 Sum_probs=27.3
Q ss_pred hhHHhhhccHHHhhhchhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021688 2 LWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAII 56 (309)
Q Consensus 2 ~~~~~~~lp~~~y~~~~l~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 56 (309)
++..+++||.++|++...-+- .+...-..=+.+.+.+.+++.++=++...++.
T Consensus 233 ~~~hll~Lpl~~f~~r~~Ge~--~sR~~el~~Ir~flt~~~l~~iiD~~~~~i~l 285 (709)
T COG2274 233 FFRHLLRLPLSYFEKRSVGEI--ISRVRELEQIREFLTGSILTLIIDLLFALIFL 285 (709)
T ss_pred HHHHHHcCcHHHccCCChhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999986653221 12222222244444445454444444444333
No 91
>PRK08990 flagellar motor protein PomA; Reviewed
Probab=65.21 E-value=95 Score=27.12 Aligned_cols=47 Identities=9% Similarity=-0.031 Sum_probs=31.6
Q ss_pred hhcCChhHHHHHHHHHHhhhhcchHHHHHHHHHHHH-HHHHHHHHHHhc
Q 021688 155 QQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLT-LLQFGGYTLVRN 202 (309)
Q Consensus 155 ~~l~~~~El~aVlaHElgH~~~~h~~~~~~~~~~~~-~~~~~~~~~~~~ 202 (309)
+.- ++++++.++-.|+.....+|....-.+..+.. .-.+++++.+.+
T Consensus 114 dg~-~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~a~~aP~lGllGTVlG 161 (254)
T PRK08990 114 DGH-DGDVVRAALEKDIALTEERHETGIGIFRAFGDVAPAMGMIGTLIG 161 (254)
T ss_pred cCC-CHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHhHHHHHHHHHHH
Confidence 345 89999999999999998888766665554432 223444444443
No 92
>PRK09109 motC flagellar motor protein; Reviewed
Probab=64.90 E-value=94 Score=26.97 Aligned_cols=47 Identities=13% Similarity=0.020 Sum_probs=31.1
Q ss_pred hhcCChhHHHHHHHHHHhhhhcchHHHHHHHHHHHH-HHHHHHHHHHhc
Q 021688 155 QQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLT-LLQFGGYTLVRN 202 (309)
Q Consensus 155 ~~l~~~~El~aVlaHElgH~~~~h~~~~~~~~~~~~-~~~~~~~~~~~~ 202 (309)
+.. ++++++.++-.|+.....+|....-....+.. .-.+++++.+.+
T Consensus 117 ~g~-~~~~i~~~le~~i~~~~~r~~~~~~~l~~~a~~AP~lGllGTVlG 164 (246)
T PRK09109 117 DGA-EPESIRSVLEVEIDTQEHRDLQAAKVFESMGGYAPTIGIIGAVMG 164 (246)
T ss_pred cCC-CHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHhHHHHHHHHHHH
Confidence 455 89999999999999999887666555444332 223444444443
No 93
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=64.85 E-value=4.4 Score=37.42 Aligned_cols=70 Identities=21% Similarity=0.239 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHcCCC--CCceEEEeCCCCCCCccEEEeccCCCceeeecHhHH-hh--c---CChhHHHHHHHHHHhhhh
Q 021688 104 LREKIEKLASSLKFP--LKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLI-QQ--C---KNDEEIVAVIAHELGHWK 175 (309)
Q Consensus 104 L~~~i~~l~~~~g~~--~~~i~v~~~~~~s~~~NA~~~G~~~~~~I~l~~~ll-~~--l---~~~~El~aVlaHElgH~~ 175 (309)
..+.++-+.+..|.+ .+++-++-.+. -..++. ..-+-|.+.+..+ .. . .+..++..++|||++|.-
T Consensus 234 ~~~~l~~~~~~~g~~yp~~k~~~v~~p~--~~~~~m----e~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~iahElahqW 307 (390)
T PF01433_consen 234 APKALEYYEEYFGIPYPFKKLDIVAVPD--FPFGGM----ENWGLITYRESYLLYDPDISTIGDKQEIASLIAHELAHQW 307 (390)
T ss_dssp HHHHHHHHHHHHTS--SSSEEEEEEEST---SSSEE------TTEEEEEGGGTS-STTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHhhccccceecceeEEEEec--cccccc----cccccccccccccccCcccccchhhhhhHHHHHHHHHHHH
Confidence 344555666677865 34443333210 112222 1234455555532 21 1 023578999999999987
Q ss_pred cchH
Q 021688 176 LNHT 179 (309)
Q Consensus 176 ~~h~ 179 (309)
-++.
T Consensus 308 fGn~ 311 (390)
T PF01433_consen 308 FGNL 311 (390)
T ss_dssp BTTT
T ss_pred hccC
Confidence 6653
No 94
>KOG3314 consensus Ku70-binding protein [Replication, recombination and repair]
Probab=64.76 E-value=19 Score=28.95 Aligned_cols=39 Identities=23% Similarity=0.289 Sum_probs=30.1
Q ss_pred ccCCCceeeecHhHHhhcCChhHHHHHHHHHHhhhhcchHHH
Q 021688 140 GFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMY 181 (309)
Q Consensus 140 G~~~~~~I~l~~~ll~~l~~~~El~aVlaHElgH~~~~h~~~ 181 (309)
|+-+++-|++-.+-+. +.+++.-|++||+-|.-..+-.+
T Consensus 71 Gy~~~~gIvlCqN~l~---~q~h~n~vv~HElIH~fDd~r~~ 109 (194)
T KOG3314|consen 71 GYTPGRGIVLCQNRLT---IQDHVNQVVIHELIHAFDDCRAK 109 (194)
T ss_pred CccCCCceEEeccccc---hHHHHHHHHHHHHHHHHHhhhhh
Confidence 4445666998887543 78999999999999988766554
No 95
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=60.92 E-value=1.4e+02 Score=27.59 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=20.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 021688 25 FNKQTIWLFFRDMIKGMILAIVLGPPIVS 53 (309)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 53 (309)
||.++..++++..+|..+++.+....+-.
T Consensus 138 FS~~~l~el~KsllK~~~~~~v~~~~~~~ 166 (359)
T PRK05702 138 FSAQGLVELLKSLLKVLLVGGVAYFVLWS 166 (359)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888887776665544333
No 96
>PF08014 DUF1704: Domain of unknown function (DUF1704); InterPro: IPR012548 This family contains many hypothetical proteins.
Probab=60.46 E-value=14 Score=33.81 Aligned_cols=68 Identities=18% Similarity=0.283 Sum_probs=43.7
Q ss_pred CCCchHHHHHHHHHHHc----CCCCCceEEEeCCCCCCCccEEEeccCCCceeeecHhHHhhcCChhHHHHHHHHHHh-h
Q 021688 99 LPEGELREKIEKLASSL----KFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELG-H 173 (309)
Q Consensus 99 l~~~~L~~~i~~l~~~~----g~~~~~i~v~~~~~~s~~~NA~~~G~~~~~~I~l~~~ll~~l~~~~El~aVlaHElg-H 173 (309)
++..+....+++.+++. +++ .+|.+.|+ -..+|.+. +.+|.|..+. .+ ++.++.+++-||+| |
T Consensus 109 ~~a~~~~~~~~~~~~~y~~~~~~~-~~V~~sdd----l~a~A~v~----~~~l~I~~~~--~f-s~~~l~~L~~HEigvH 176 (349)
T PF08014_consen 109 LDAEEAVSRLQERLKKYFGKEGFE-VKVELSDD----LLARAMVS----GDRLKINKNA--MF-SERDLEALLHHEIGVH 176 (349)
T ss_pred CCHHHHHHHHHHHHHHHhcccCce-EEEEEcCC----cchhhccc----CCeeEEcCCC--Cc-CHHHHHHHHHHhhhhh
Confidence 34456667777777765 432 34444443 23566654 4558888764 35 89999999999997 6
Q ss_pred hhcch
Q 021688 174 WKLNH 178 (309)
Q Consensus 174 ~~~~h 178 (309)
+....
T Consensus 177 ~lt~~ 181 (349)
T PF08014_consen 177 LLTTL 181 (349)
T ss_pred hcccc
Confidence 65443
No 97
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=60.18 E-value=19 Score=23.60 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhhhHhhhhhccccccCCCchHHHHHHHHHHHcCCC
Q 021688 71 WAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFP 118 (309)
Q Consensus 71 ~~~~~~~~~~~~~~~p~~i~~l~~~~~pl~~~~L~~~i~~l~~~~g~~ 118 (309)
.++...+++++..+||.++.|+.+ +|-+++.++..+ .|++
T Consensus 9 ~~~ggfVg~iG~a~Ypi~~~Pmm~-------~eeYk~~Q~~nR-~gI~ 48 (58)
T PF15061_consen 9 LFVGGFVGLIGAALYPIYFRPMMN-------PEEYKKEQKINR-AGIK 48 (58)
T ss_pred hhHHHHHHHHHHHHhhhhcccccC-------hHHHHHHHHHHH-hccc
Confidence 344555677888899988877654 455666666543 3443
No 98
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=59.53 E-value=1.4e+02 Score=27.35 Aligned_cols=28 Identities=14% Similarity=0.443 Sum_probs=19.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 021688 25 FNKQTIWLFFRDMIKGMILAIVLGPPIV 52 (309)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 52 (309)
||.++..++++..+|..+++.+....+-
T Consensus 131 Fs~~~l~el~Ksl~Kv~~~~~v~~~~~~ 158 (349)
T PRK12721 131 FSLKSVFELCKSLLKVVILSLIFAYLLH 158 (349)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888888888887777666554443
No 99
>PRK12482 flagellar motor protein MotA; Provisional
Probab=58.91 E-value=1.3e+02 Score=26.75 Aligned_cols=31 Identities=16% Similarity=0.123 Sum_probs=25.5
Q ss_pred cCChhHHHHHHHHHHhhhhcchHHHHHHHHHH
Q 021688 157 CKNDEEIVAVIAHELGHWKLNHTMYSFIAVQV 188 (309)
Q Consensus 157 l~~~~El~aVlaHElgH~~~~h~~~~~~~~~~ 188 (309)
. |+++++.++-.|+.....+|..-.-.+..+
T Consensus 138 ~-d~~~i~~iLe~eie~~~~r~~~~a~v~~~~ 168 (287)
T PRK12482 138 I-NQHELEGILDQELDAVEEELLQPSRSLQRI 168 (287)
T ss_pred C-CHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 5 999999999999999998888766555543
No 100
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=58.87 E-value=1.5e+02 Score=27.62 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=19.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 021688 25 FNKQTIWLFFRDMIKGMILAIVLGPP 50 (309)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~l~~~ 50 (309)
||.+++.++++..+|..+++.+....
T Consensus 138 FS~~~l~el~KsllKv~li~~v~~~~ 163 (386)
T PRK12468 138 FSSQALAELLKAILKATLVGWVTGLF 163 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888887776655543
No 101
>smart00235 ZnMc Zinc-dependent metalloprotease. Neutral zinc metallopeptidases. This alignment represents a subset of known subfamilies. Highest similarity occurs in the HExxH zinc-binding site/ active site.
Probab=58.87 E-value=4.5 Score=31.49 Aligned_cols=12 Identities=58% Similarity=0.722 Sum_probs=10.2
Q ss_pred HHHHHHHHhhhh
Q 021688 164 VAVIAHELGHWK 175 (309)
Q Consensus 164 ~aVlaHElgH~~ 175 (309)
.+|+.||+||..
T Consensus 87 ~~~~~HEigHaL 98 (140)
T smart00235 87 TGVAAHELGHAL 98 (140)
T ss_pred cccHHHHHHHHh
Confidence 459999999975
No 102
>PF06861 BALF1: BALF1 protein; InterPro: IPR010677 Epstein-Barr virus (strain GD1) (HHV-4), a human tumour DNA virus and a prominent member of gamma-herpesviruses, encodes homologues of cellular antiapoptotic viral Bcl-2 proteins BALF1 and BHRF1. They protect the virus from apoptosis in its host cell during virus synthesis [, ]. The virus infects B lymphocytes to establish a latent infection and yield proliferating, growth-transformed B cells in vitro. Bcl-2 genes are essential for the initial evasion of apoptosis which allows it to establish a latent infection or cause cellular transformation, or both []. Bcl-2 family proteins can inhibit or induce programmed cell death in part by counteracting the activity of other BCL-2 family members. BALF1, inhibits the antiapoptotic activity of EBV BHRF1 and of KSBcl-2 in several transfected cell lines. BALF1 fails, however, to inhibit the cellular BCL-2 family member, BCL-x(L). Thus, BALF1 acts as a negative regulator of the survival function of BHRF1, similar to the counterbalance observed between cellular BCL-2 family members [].
Probab=58.67 E-value=8.6 Score=31.02 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=21.4
Q ss_pred hcCChhHHHHHHHHHHhhhhcchHH
Q 021688 156 QCKNDEEIVAVIAHELGHWKLNHTM 180 (309)
Q Consensus 156 ~l~~~~El~aVlaHElgH~~~~h~~ 180 (309)
.++|++|-.++++|++||+..+|-.
T Consensus 125 ~l~~d~e~~s~v~~~lA~Fy~~~r~ 149 (182)
T PF06861_consen 125 NLLNDHENASLVSHALAHFYLRYRR 149 (182)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHH
Confidence 4559999999999999999988743
No 103
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=57.59 E-value=20 Score=37.06 Aligned_cols=66 Identities=18% Similarity=0.307 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCCCC--Cce--EEEeCCCCCCCccEEEeccCCCceeeecHhHHhhcC----ChhHHHHHHHHHHhhhhcc
Q 021688 106 EKIEKLASSLKFPL--KKL--FVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCK----NDEEIVAVIAHELGHWKLN 177 (309)
Q Consensus 106 ~~i~~l~~~~g~~~--~~i--~v~~~~~~s~~~NA~~~G~~~~~~I~l~~~ll~~l~----~~~El~aVlaHElgH~~~~ 177 (309)
+.++-+.+..|+|. +++ ..+++ .++. |+-.-+.|...+..+..-+ +.+.+..|+|||++|.-.+
T Consensus 230 ~~l~~~e~~fg~pYP~~k~d~V~vP~------f~~G--aMEn~Glit~~e~~l~~~~~~~~~~~~~~~viaHElAHqWFG 301 (831)
T TIGR02412 230 QGLAFFHRKFGYPYPFKKYDQIFVPE------FNAG--AMENAGCVTFAENFLHRAEATRAEKENRAGVILHEMAHMWFG 301 (831)
T ss_pred HHHHHHHHHhCCCCCcccCCEEEcCC------CCCC--cccccceeeechhhccCCcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 34455566778653 333 33332 2221 2222345556555442110 1235778999999998876
Q ss_pred hH
Q 021688 178 HT 179 (309)
Q Consensus 178 h~ 179 (309)
+.
T Consensus 302 nl 303 (831)
T TIGR02412 302 DL 303 (831)
T ss_pred CE
Confidence 54
No 104
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=57.15 E-value=73 Score=23.20 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=29.7
Q ss_pred hchhhcccCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021688 16 TFVIEARHGFNKQT-IWLFFRDMIKGMILAIVLGPPIVSAIIIIV 59 (309)
Q Consensus 16 ~~~l~~~~g~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~ 59 (309)
.+.+-+..|+++.. ...++.+.+...+.+.+++.++........
T Consensus 29 ~~~il~~lG~s~~~i~~~~~~e~~~~~~~~~~~g~~~~~~~~~~~ 73 (121)
T PF02687_consen 29 EIAILRALGASKRQIRKMFLYEALLIALIGILIGILLGILLIIFL 73 (121)
T ss_pred HHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667887666 777788888777777777766666555443
No 105
>PRK00523 hypothetical protein; Provisional
Probab=56.90 E-value=15 Score=25.18 Aligned_cols=29 Identities=10% Similarity=0.135 Sum_probs=15.7
Q ss_pred HhhhhhccccccCCCchHHHHHHHHHHHcCCCC
Q 021688 87 VLIAPLFNKFTPLPEGELREKIEKLASSLKFPL 119 (309)
Q Consensus 87 ~~i~~l~~~~~pl~~~~L~~~i~~l~~~~g~~~ 119 (309)
.+...-+.+-.|+++ +.++.+..+.|-++
T Consensus 28 k~~~k~l~~NPpine----~mir~M~~QMGqKP 56 (72)
T PRK00523 28 KMFKKQIRENPPITE----NMIRAMYMQMGRKP 56 (72)
T ss_pred HHHHHHHHHCcCCCH----HHHHHHHHHhCCCc
Confidence 334444444455554 45666666777653
No 106
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=56.64 E-value=25 Score=31.27 Aligned_cols=43 Identities=21% Similarity=0.432 Sum_probs=35.7
Q ss_pred hccccccCCCc-hHHHHHHHHHHHcCCCCCceEEEeCCCCCCCccEEEec
Q 021688 92 LFNKFTPLPEG-ELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYG 140 (309)
Q Consensus 92 l~~~~~pl~~~-~L~~~i~~l~~~~g~~~~~i~v~~~~~~s~~~NA~~~G 140 (309)
.+.++.|+++| ++++.+.++|++.|+. .+|++.+. ..|+.+.|
T Consensus 9 a~Y~f~~i~dp~~~~~~l~~~~~~~~vk-GrillA~E-----GINgtvsG 52 (308)
T COG1054 9 AYYKFVPIEDPEALRDPLLALCKALGVK-GRILLAHE-----GINGTVSG 52 (308)
T ss_pred EEEEEEecCCHHHHHHHHHHHHHHcCce-eEEEEccC-----CcceeEec
Confidence 45678999875 6889999999999997 68888774 68999887
No 107
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=56.51 E-value=1.6e+02 Score=27.00 Aligned_cols=28 Identities=14% Similarity=0.261 Sum_probs=20.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 021688 25 FNKQTIWLFFRDMIKGMILAIVLGPPIV 52 (309)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 52 (309)
||.++..++++..+|..+++.+....+-
T Consensus 131 FS~~~l~el~KsllK~~~i~~v~~~~~~ 158 (347)
T TIGR00328 131 FSLQSLVELLKSLLKVFLVSFVAYFVLR 158 (347)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888899999988877766654433
No 108
>cd04276 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=55.60 E-value=7.7 Score=32.49 Aligned_cols=31 Identities=26% Similarity=0.484 Sum_probs=21.7
Q ss_pred ceeeecHhHHhhcC------ChhHHHHHHHHHHhhhh
Q 021688 145 KRIVLYDTLIQQCK------NDEEIVAVIAHELGHWK 175 (309)
Q Consensus 145 ~~I~l~~~ll~~l~------~~~El~aVlaHElgH~~ 175 (309)
..|.+..+.+.... ..+-+..+++||+||..
T Consensus 92 a~V~l~~~~~~~~~~~~~~~~~~~~~~~~~he~gh~l 128 (197)
T cd04276 92 ADVILYSGFLRQDQLWYEDLLAASLRYLLAHEVGHTL 128 (197)
T ss_pred EEEEeCchhhccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777665431 23558999999999975
No 109
>cd04277 ZnMc_serralysin_like Zinc-dependent metalloprotease, serralysin_like subfamily. Serralysins and related proteases are important virulence factors in pathogenic bacteria. They may be secreted into the medium via a mechanism found in gram-negative bacteria, that does not require n-terminal signal sequences which are cleaved after the transmembrane translocation. A calcium-binding domain c-terminal to the metalloprotease domain, which contains multiple tandem repeats of a nine-residue motif including the pattern GGxGxD, and which forms a parallel beta roll may be involved in the translocation mechanism and/or substrate binding. Serralysin family members may have a broad spectrum of substrates each, including host immunoglobulins, complement proteins, cell matrix and cytoskeletal proteins, as well as antimicrobial peptides.
Probab=55.55 E-value=7.5 Score=31.97 Aligned_cols=31 Identities=19% Similarity=0.143 Sum_probs=20.3
Q ss_pred ceeeecHhHHhhc-CChhHHHHHHHHHHhhhh
Q 021688 145 KRIVLYDTLIQQC-KNDEEIVAVIAHELGHWK 175 (309)
Q Consensus 145 ~~I~l~~~ll~~l-~~~~El~aVlaHElgH~~ 175 (309)
+.|.+........ ........++.||+||..
T Consensus 94 g~i~~~~~~~~~~~~~g~~~~~t~~HEiGHaL 125 (186)
T cd04277 94 GDIWFNSSYDTNSDSPGSYGYQTIIHEIGHAL 125 (186)
T ss_pred ceeEEecCcccccCCCChhhHHHHHHHHHHHh
Confidence 4566665533221 134668999999999976
No 110
>TIGR02421 QEGLA conserved hypothetical protein. Members of this family include a possible metal-binding motif HEXXXH and, nearby, a perfectly conserved motif QEGLA. All members belong to the Proteobacteria, including Agrobacterium tumefaciens and several species of Vibrio and Pseudomonas, and are found in only one copy per chromosome (Vibrio vulnificus, with two chromosomes, has two). The function is unknown.
Probab=55.51 E-value=17 Score=33.58 Aligned_cols=63 Identities=16% Similarity=0.217 Sum_probs=43.6
Q ss_pred CCCchHHHHHHHHHHHcCCCC-CceEEEeCCCCCCCccEEEeccCCCceeeecHhHHhhcCChhHHHHHHHHHHh
Q 021688 99 LPEGELREKIEKLASSLKFPL-KKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELG 172 (309)
Q Consensus 99 l~~~~L~~~i~~l~~~~g~~~-~~i~v~~~~~~s~~~NA~~~G~~~~~~I~l~~~ll~~l~~~~El~aVlaHElg 172 (309)
.+.++..+.+++.++..+... .+|.+.|+ -..+|.+. +++|.|..+. .+ ++.++.+++-||+|
T Consensus 134 ~~A~~a~~~~~~~~~~y~~~~~~~V~~sd~----l~a~a~v~----~~~l~i~~~a--~f-s~~~l~~L~~HEig 197 (366)
T TIGR02421 134 VSATEAAEILQQRLEDYFGEETIRVTLSDD----LPAGAMVS----GDKLKLNSDA--MF-SERDLEALIHHEIG 197 (366)
T ss_pred cCHHHHHHHHHHHHHHhCCCCceEEEECcc----hhHHHhcc----CCeEEECCCC--Cc-CHHHHHHHHHHhHH
Confidence 344678888888888887752 23433332 22466654 3478888874 35 89999999999999
No 111
>PRK09108 type III secretion system protein HrcU; Validated
Probab=55.49 E-value=1.7e+02 Score=26.93 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=19.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 021688 25 FNKQTIWLFFRDMIKGMILAIVLGPPI 51 (309)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~l~~~~ 51 (309)
||.++..++++..+|..+++.+....+
T Consensus 133 FS~~~l~el~KsllK~~~~~~v~~~~~ 159 (353)
T PRK09108 133 FSLRSLIELVKMIVKAVVIAAVLWKGI 159 (353)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888888877766655443
No 112
>KOG3624 consensus M13 family peptidase [Amino acid transport and metabolism]
Probab=54.99 E-value=8.9 Score=38.65 Aligned_cols=42 Identities=33% Similarity=0.283 Sum_probs=30.2
Q ss_pred CCccEEEeccCCCceeeecHhHHhh----------cCChhHHHHHHHHHHhhhhc
Q 021688 132 SHSNAYMYGFFKNKRIVLYDTLIQQ----------CKNDEEIVAVIAHELGHWKL 176 (309)
Q Consensus 132 ~~~NA~~~G~~~~~~I~l~~~ll~~----------l~~~~El~aVlaHElgH~~~ 176 (309)
...||+-. +.+..|++..++++. + +-.-+..|||||++|--.
T Consensus 480 ~~~na~Y~--~~~N~i~~pa~ilq~P~f~~~~P~~~-nyg~iG~vigHEl~H~FD 531 (687)
T KOG3624|consen 480 AQVNAFYS--PEKNEIVFPAGLLQPPFFDLSYPDYL-NYGGIGFVIGHELTHGFD 531 (687)
T ss_pred ceeecccc--CCCceEEEehhcccCCCCCcccchhh-hhHHHHHHHHHHHhhccc
Confidence 34666643 346788999988874 4 455688999999999543
No 113
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=54.92 E-value=1.8e+02 Score=26.91 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=20.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 021688 25 FNKQTIWLFFRDMIKGMILAIVLGPPIV 52 (309)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 52 (309)
||.++..++++..+|..+++.+....+-
T Consensus 140 FS~~~l~el~KsllK~~~i~~i~~~~~~ 167 (358)
T PRK13109 140 FGTSGQVEFLKSLFKFLSVSVVVLLLLR 167 (358)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888888889999988777666554433
No 114
>PF02163 Peptidase_M50: Peptidase family M50; InterPro: IPR008915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains metallopeptidases belonging to MEROPS peptidase family M50 (S2P protease family, clan MM). Members of the M50 metallopeptidase family include: mammalian sterol-regulatory element binding protein (SREBP) site 2 protease, Escherichia coli protease EcfE, stage IV sporulation protein FB and various hypothetical bacterial and eukaryotic homologues. A number of proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity.; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3B4R_A 3ID4_A 3ID2_A 2ZPL_B 3ID1_A 2ZPM_A 3ID3_B 2HGA_A.
Probab=54.87 E-value=7.7 Score=32.01 Aligned_cols=13 Identities=38% Similarity=0.833 Sum_probs=11.0
Q ss_pred HHHHHHHHHhhhh
Q 021688 163 IVAVIAHELGHWK 175 (309)
Q Consensus 163 l~aVlaHElgH~~ 175 (309)
+.+++.||+||..
T Consensus 7 ~i~i~~HE~gH~~ 19 (192)
T PF02163_consen 7 LISIVLHELGHAL 19 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccccccccccccc
Confidence 4578999999976
No 115
>cd04273 ZnMc_ADAMTS_like Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that combine ADAM-like metalloproteinases with thrombospondin type-1 repeats. ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) proteinases are inhibited by TIMPs (tissue inhibitors of metalloproteinases), and they play roles in coagulation, angiogenesis, development and progression of arthritis. They hydrolyze the von Willebrand factor precursor and various components of the extracellular matrix.
Probab=53.57 E-value=2.7 Score=35.40 Aligned_cols=13 Identities=54% Similarity=0.613 Sum_probs=11.3
Q ss_pred HHHHHHHHHhhhh
Q 021688 163 IVAVIAHELGHWK 175 (309)
Q Consensus 163 l~aVlaHElgH~~ 175 (309)
.+.++|||+||.-
T Consensus 140 ~a~~~aHElGH~L 152 (207)
T cd04273 140 SAFTIAHELGHVL 152 (207)
T ss_pred eEEeeeeechhhc
Confidence 4689999999976
No 116
>COG3402 Uncharacterized conserved protein [Function unknown]
Probab=52.93 E-value=79 Score=25.32 Aligned_cols=43 Identities=12% Similarity=0.187 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHhcChhHHHHHHHHHHH-HHHHHHHhhhH
Q 021688 45 IVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFV-LSLVMMTLYPV 87 (309)
Q Consensus 45 ~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~ 87 (309)
+++.+++.....+.+-...+.|+.+..+..++ .+++..++.|.
T Consensus 27 l~Ll~av~~~~~~~~~~~~~~w~~~a~~av~l~~~vv~l~iiP~ 70 (161)
T COG3402 27 LVLLIAVAAGVLLYFVGLDPNWSSVAAVAVILLAAVVTLFIIPQ 70 (161)
T ss_pred HHHHHHHHHHHHHheeccCCccHHHHHHHHHHHHHHHHhhhhhH
Confidence 44555555545444444345566555444443 34455677774
No 117
>cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3. A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=52.45 E-value=9 Score=31.99 Aligned_cols=16 Identities=38% Similarity=0.457 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHhhhhc
Q 021688 161 EEIVAVIAHELGHWKL 176 (309)
Q Consensus 161 ~El~aVlaHElgH~~~ 176 (309)
.+..+++.||+||...
T Consensus 90 ~~~~~~i~HElgHaLG 105 (198)
T cd04327 90 PEFSRVVLHEFGHALG 105 (198)
T ss_pred hhHHHHHHHHHHHHhc
Confidence 3567899999999764
No 118
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=52.43 E-value=23 Score=22.61 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhH
Q 021688 64 PYLAIYLWAFMFVLSLVMMTLYPV 87 (309)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~p~ 87 (309)
+.||++++...++++++..+.+|.
T Consensus 21 P~ww~~~f~~tivfa~~Y~~~yp~ 44 (51)
T PF14715_consen 21 PRWWLWLFYGTIVFAVGYLVLYPG 44 (51)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578888888888888777777773
No 119
>cd06456 M3A_DCP_Oligopeptidase_A Peptidase family M3 dipeptidyl carboxypeptidase (DCP; Dcp II; peptidyl dipeptidase; EC 3.4.15.5). This metal-binding M3A family also includes oligopeptidase A (OpdA; EC 3.4.24.70) enzyme. DCP cleaves dipeptides off the C-termini of various peptides and proteins, the smallest substrate being N-blocked tripeptides and unblocked tetrapeptides. DCP from E. coli is inhibited by the anti-hypertensive drug captopril, an inhibitor of the mammalian angiotensin converting enzyme (ACE, also called peptidyl dipeptidase A). Oligopeptidase A (OpdA) may play a specific role in the degradation of signal peptides after they are released from precursor forms of secreted proteins. It can also cleave N-acetyl-L-Ala.
Probab=50.81 E-value=22 Score=33.52 Aligned_cols=30 Identities=10% Similarity=0.303 Sum_probs=20.9
Q ss_pred HHhhhchhhcccCCCCCCHHHHHHHHHHHH
Q 021688 12 SLYSTFVIEARHGFNKQTIWLFFRDMIKGM 41 (309)
Q Consensus 12 ~~y~~~~l~~~~g~~~~~~~~~~~~~~~~~ 41 (309)
.=|..|.++.+-..|.+....|+.+....+
T Consensus 23 ~s~a~~~l~~~ma~sp~~v~~Fl~~l~~~~ 52 (422)
T cd06456 23 ENYAEYSLADKMAKSPEAVLEFLEDLAPKA 52 (422)
T ss_pred CCHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 345667777777777777788877766655
No 120
>cd06161 S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB.
Probab=49.68 E-value=10 Score=31.97 Aligned_cols=14 Identities=43% Similarity=0.634 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhhh
Q 021688 162 EIVAVIAHELGHWK 175 (309)
Q Consensus 162 El~aVlaHElgH~~ 175 (309)
=+.+|+.||+||..
T Consensus 37 l~~~v~iHElgH~~ 50 (208)
T cd06161 37 LFLSVLLHELGHAL 50 (208)
T ss_pred HHHHHHHHHHHHHH
Confidence 36689999999975
No 121
>cd05709 S2P-M50 Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-bindin
Probab=49.65 E-value=10 Score=30.93 Aligned_cols=13 Identities=46% Similarity=0.779 Sum_probs=11.0
Q ss_pred HHHHHHHHHhhhh
Q 021688 163 IVAVIAHELGHWK 175 (309)
Q Consensus 163 l~aVlaHElgH~~ 175 (309)
+-+|+.||+||..
T Consensus 8 ~i~i~iHE~gH~~ 20 (180)
T cd05709 8 LISVTVHELGHAL 20 (180)
T ss_pred HHHHHHHHHHHHH
Confidence 4578999999986
No 122
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=49.18 E-value=19 Score=35.67 Aligned_cols=30 Identities=40% Similarity=0.371 Sum_probs=20.0
Q ss_pred eeecHhHHhhcCChhHHHHHHHHHHhhhhcchH
Q 021688 147 IVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHT 179 (309)
Q Consensus 147 I~l~~~ll~~l~~~~El~aVlaHElgH~~~~h~ 179 (309)
.+.+.+++. .+.+...|+|||++|---++.
T Consensus 266 tf~~~~ll~---~d~s~~~viaHElAHqWfGNl 295 (601)
T TIGR02411 266 TFATPTLIA---GDRSNVDVIAHELAHSWSGNL 295 (601)
T ss_pred eeecccccc---CChhhhhhHHHHHHhhccCce
Confidence 444555543 344567899999999876643
No 123
>cd06163 S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.
Probab=48.98 E-value=9.6 Score=31.47 Aligned_cols=12 Identities=42% Similarity=0.938 Sum_probs=10.0
Q ss_pred HHHHHHHHhhhh
Q 021688 164 VAVIAHELGHWK 175 (309)
Q Consensus 164 ~aVlaHElgH~~ 175 (309)
..|+-||+||..
T Consensus 10 ~~v~iHElGH~~ 21 (182)
T cd06163 10 ILIFVHELGHFL 21 (182)
T ss_pred HHHHHHHHHHHH
Confidence 468899999976
No 124
>KOG3607 consensus Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family [Posttranslational modification, protein turnover, chaperones]
Probab=48.58 E-value=17 Score=36.79 Aligned_cols=72 Identities=21% Similarity=0.182 Sum_probs=38.9
Q ss_pred chHHHHHHHHHH--H--cC--CCCCceEEEe--CCCCCCCccEEEeccCC-CceeeecHhHHhhcCChhHHHHHHHHHHh
Q 021688 102 GELREKIEKLAS--S--LK--FPLKKLFVVD--GSTRSSHSNAYMYGFFK-NKRIVLYDTLIQQCKNDEEIVAVIAHELG 172 (309)
Q Consensus 102 ~~L~~~i~~l~~--~--~g--~~~~~i~v~~--~~~~s~~~NA~~~G~~~-~~~I~l~~~ll~~l~~~~El~aVlaHElg 172 (309)
+++.+.+++..+ + .. .+.+..+++- ....+....||+.|+.. .....|... ..- +....+.|+|||||
T Consensus 256 ~~~~~tL~~F~~wr~~~l~~r~~hD~a~L~~~~~~~~~~~G~a~~~~mCs~~~s~gv~~~--~~~-~~~~~a~v~Ahelg 332 (716)
T KOG3607|consen 256 EDLRETLHNFLKWRKSYLTTRLPHDAAHLLSGILFYGKYVGLAYFGGMCSPGHSGGVNKF--HSD-ILLAFAVVLAHELG 332 (716)
T ss_pred ccHHHHHHHHHHHHHhhccccCCCCceEEEEeeeccCceeceeecccccCcccccceeec--Ccc-cchhHHHHHHHHHH
Confidence 466666665543 1 11 1233334333 23334556788777762 233333211 111 56778999999999
Q ss_pred hhhc
Q 021688 173 HWKL 176 (309)
Q Consensus 173 H~~~ 176 (309)
|...
T Consensus 333 H~lG 336 (716)
T KOG3607|consen 333 HNLG 336 (716)
T ss_pred hhcC
Confidence 9764
No 125
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=48.33 E-value=30 Score=35.91 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHhhhhcchHHHHH
Q 021688 160 DEEIVAVIAHELGHWKLNHTMYSF 183 (309)
Q Consensus 160 ~~El~aVlaHElgH~~~~h~~~~~ 183 (309)
-+.++.|+|||++|--.++...+-
T Consensus 304 ~~~~~~viaHElaHqWfGnlVT~~ 327 (859)
T COG0308 304 YENVEEVIAHELAHQWFGNLVTMK 327 (859)
T ss_pred HHHHHHHHHHHHhhhcccceeecc
Confidence 366777999999998877765443
No 126
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=47.00 E-value=12 Score=31.42 Aligned_cols=21 Identities=29% Similarity=0.121 Sum_probs=16.9
Q ss_pred hhcCChhHHHHHHHHHHhhhhc
Q 021688 155 QQCKNDEEIVAVIAHELGHWKL 176 (309)
Q Consensus 155 ~~l~~~~El~aVlaHElgH~~~ 176 (309)
..| +..-..+|+|||+.|...
T Consensus 86 ~GL-Prll~gsiLAHE~mHa~L 106 (212)
T PF12315_consen 86 YGL-PRLLTGSILAHELMHAWL 106 (212)
T ss_pred CCC-CHHHHhhHHHHHHHHHHh
Confidence 345 777789999999999764
No 127
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.80 E-value=29 Score=23.62 Aligned_cols=34 Identities=9% Similarity=0.089 Sum_probs=18.4
Q ss_pred HHhhhHhhhhhccccccCCCchHHHHHHHHHHHcCCCC
Q 021688 82 MTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPL 119 (309)
Q Consensus 82 ~~~~p~~i~~l~~~~~pl~~~~L~~~i~~l~~~~g~~~ 119 (309)
+++.-..+...+.+-.|++++. ++.+..+.|-++
T Consensus 22 ~fiark~~~k~lk~NPpine~~----iR~M~~qmGqKp 55 (71)
T COG3763 22 FFIARKQMKKQLKDNPPINEEM----IRMMMAQMGQKP 55 (71)
T ss_pred HHHHHHHHHHHHhhCCCCCHHH----HHHHHHHhCCCc
Confidence 4444455555556666776544 444555556543
No 128
>cd06164 S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed tha
Probab=46.35 E-value=12 Score=32.00 Aligned_cols=14 Identities=43% Similarity=0.600 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhhhh
Q 021688 162 EIVAVIAHELGHWK 175 (309)
Q Consensus 162 El~aVlaHElgH~~ 175 (309)
=..+|+.||+||..
T Consensus 52 l~~~v~iHElgH~~ 65 (227)
T cd06164 52 LFASVLLHELGHSL 65 (227)
T ss_pred HHHHHHHHHHHHHH
Confidence 35789999999975
No 129
>PF09471 Peptidase_M64: IgA Peptidase M64; InterPro: IPR019026 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This is a family of highly selective metallo-endopeptidases belonging to the MEROPS peptidase family M64 (IgA peptidase, clan MA). The primary structure of the Clostridium ramosum IgA peptidase shows no significant overall similarity to any other known metallo-endopeptidase []. ; PDB: 3P1V_A 4DF9_D.
Probab=46.22 E-value=12 Score=32.80 Aligned_cols=16 Identities=31% Similarity=0.640 Sum_probs=13.3
Q ss_pred ChhHHHHHHHHHHhhh
Q 021688 159 NDEEIVAVIAHELGHW 174 (309)
Q Consensus 159 ~~~El~aVlaHElgH~ 174 (309)
+.+....|+.||+||-
T Consensus 212 ~~~~~~~v~vHE~GHs 227 (264)
T PF09471_consen 212 DNPSFKQVVVHEFGHS 227 (264)
T ss_dssp TSTTHHHHHHHHHHHH
T ss_pred Ccccccceeeeecccc
Confidence 4557899999999994
No 130
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=45.83 E-value=13 Score=33.72 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=21.6
Q ss_pred ChhHHHHHHHHHHhhhh---cchHHHHHH
Q 021688 159 NDEEIVAVIAHELGHWK---LNHTMYSFI 184 (309)
Q Consensus 159 ~~~El~aVlaHElgH~~---~~h~~~~~~ 184 (309)
++.|++.+|-||++|-. .+|+..+-.
T Consensus 161 ~~~~LA~LIfHELaHq~~Yv~~dt~FNEs 189 (337)
T PF10023_consen 161 PDGELARLIFHELAHQTLYVKGDTAFNES 189 (337)
T ss_pred CchHHHHHHHHHHhhceeecCCCchhhHH
Confidence 88999999999999954 677776653
No 131
>PRK09110 flagellar motor protein MotA; Validated
Probab=44.78 E-value=2.3e+02 Score=25.24 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=21.0
Q ss_pred cCChhHHHHHHHHHHhhhhcchHHHHH
Q 021688 157 CKNDEEIVAVIAHELGHWKLNHTMYSF 183 (309)
Q Consensus 157 l~~~~El~aVlaHElgH~~~~h~~~~~ 183 (309)
. ++++++.++-.|+....++|..-.-
T Consensus 138 ~-~~~~i~~iLe~ei~~~~~~~~~~~~ 163 (283)
T PRK09110 138 M-NPHEIEALMDEEIETHHHEAEVPAH 163 (283)
T ss_pred C-CHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 5 8999999999999988877754433
No 132
>cd06160 S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.
Probab=43.34 E-value=15 Score=30.36 Aligned_cols=15 Identities=27% Similarity=0.507 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHhhhh
Q 021688 161 EEIVAVIAHELGHWK 175 (309)
Q Consensus 161 ~El~aVlaHElgH~~ 175 (309)
-=+..+..||+||..
T Consensus 39 ~l~~~l~iHElgH~~ 53 (183)
T cd06160 39 ALLAILGIHEMGHYL 53 (183)
T ss_pred HHHHHHHHHHHHHHH
Confidence 346678899999975
No 133
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=43.22 E-value=2.1e+02 Score=24.45 Aligned_cols=58 Identities=10% Similarity=0.142 Sum_probs=34.2
Q ss_pred CchHHHHHHHHHHHcCCCCCceEEEeCCCCCCCccEEEeccCCCceeeecHhHHhhcCChhHHHHHHHHHH
Q 021688 101 EGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHEL 171 (309)
Q Consensus 101 ~~~L~~~i~~l~~~~g~~~~~i~v~~~~~~s~~~NA~~~G~~~~~~I~l~~~ll~~l~~~~El~aVlaHEl 171 (309)
.+.-...++.+-+ |...++-.-+| .+.++..-+.++.+.|.|.+| +..-+.-.++-|=
T Consensus 87 pGAa~avL~~lr~--~W~~~~pVa~n-----r~qD~V~R~vGrpGVvLVgEG------~~~Rv~~Ll~~E~ 144 (224)
T PF13829_consen 87 PGAAGAVLDNLRR--GWRVTEPVAVN-----RTQDAVHRVVGRPGVVLVGEG------PPSRVKKLLAQEK 144 (224)
T ss_pred CchHHHHHHhhcC--CcccCCceeec-----CccceEEEecCCCcEEEEecC------CHHHHHHHHHHHH
Confidence 3556666776655 44333322233 234566666777789999998 5555555666553
No 134
>PRK08124 flagellar motor protein MotA; Validated
Probab=42.64 E-value=2.3e+02 Score=24.79 Aligned_cols=47 Identities=21% Similarity=0.090 Sum_probs=31.2
Q ss_pred hhcCChhHHHHHHHHHHhhhhcchHHHHHHHHHHHH-HHHHHHHHHHhc
Q 021688 155 QQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLT-LLQFGGYTLVRN 202 (309)
Q Consensus 155 ~~l~~~~El~aVlaHElgH~~~~h~~~~~~~~~~~~-~~~~~~~~~~~~ 202 (309)
+.- +++|++.++-.|+.....+|....-....+.. .-.+++++.+.+
T Consensus 118 ~g~-~~~~i~~~le~~i~~~~~~~~~~~~~l~~ia~~AP~lGllGTVlG 165 (263)
T PRK08124 118 DGQ-SPEFIRDVLEEEIEAMEERHAAGAAIFTQAGTYAPTLGVLGAVIG 165 (263)
T ss_pred cCC-CHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHH
Confidence 355 89999999999999888887766655544332 223444555443
No 135
>PRK05320 rhodanese superfamily protein; Provisional
Probab=42.11 E-value=37 Score=29.72 Aligned_cols=55 Identities=16% Similarity=0.240 Sum_probs=40.5
Q ss_pred hccccccCCCc-hHHHHHHHHHHHcCCCCCceEEEeCCCCCCCccEEEeccCCCceeeecHhHH
Q 021688 92 LFNKFTPLPEG-ELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLI 154 (309)
Q Consensus 92 l~~~~~pl~~~-~L~~~i~~l~~~~g~~~~~i~v~~~~~~s~~~NA~~~G~~~~~~I~l~~~ll 154 (309)
.|.++.|++|+ ++++.+.++|++.|+. .+|++-+. ..|+.+.|- ..+|-.....+
T Consensus 7 ~~Y~f~~i~~~~~~~~~~~~~~~~~~~~-G~i~ia~e-----GiN~t~~g~--~~~id~~~~~l 62 (257)
T PRK05320 7 AAYKFVSLDDPETLRPLVLARCEALGLK-GTILLAPE-----GINLFLAGT--REAIDAFYAWL 62 (257)
T ss_pred EEEceeecCCHHHHHHHHHHHHHHCCCe-EEEEEcCC-----CceEEEEee--HHHHHHHHHHH
Confidence 46789999874 5888999999999986 68888764 689999873 34444433333
No 136
>cd06159 S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group appears to be limited to Archaeal S2P/M50s homologs with additional putative N-terminal transmembrane spanning regions, relative to the core protein, and either one or two PDZ domains present.
Probab=42.00 E-value=15 Score=32.22 Aligned_cols=14 Identities=43% Similarity=0.589 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhhhh
Q 021688 162 EIVAVIAHELGHWK 175 (309)
Q Consensus 162 El~aVlaHElgH~~ 175 (309)
=..+|+.||+||..
T Consensus 117 L~isv~iHElgHa~ 130 (263)
T cd06159 117 LVVGVVVHELSHGI 130 (263)
T ss_pred HHHHHHHHHHHHHH
Confidence 46789999999975
No 137
>TIGR03296 M6dom_TIGR03296 M6 family metalloprotease domain. This model describes a metalloproteinase domain, with a characteristic HExxH motif. Examples of this domain are found in proteins in the family of immune inhibitor A, which cleaves antibacterial peptides, and in other, only distantly related proteases. This model is built to be broader and more inclusive than Pfam model pfam05547.
Probab=41.91 E-value=6.2 Score=35.11 Aligned_cols=12 Identities=75% Similarity=0.905 Sum_probs=10.5
Q ss_pred HHHHHHHHhhhh
Q 021688 164 VAVIAHELGHWK 175 (309)
Q Consensus 164 ~aVlaHElgH~~ 175 (309)
..|++||+||.-
T Consensus 166 igv~~HE~gH~l 177 (286)
T TIGR03296 166 VGVIAHELGHDL 177 (286)
T ss_pred eeeeehhhhccc
Confidence 699999999954
No 138
>COG5504 Predicted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=41.61 E-value=64 Score=28.02 Aligned_cols=30 Identities=27% Similarity=0.254 Sum_probs=21.8
Q ss_pred CceeeecHhHHhhcCChhHHHHHHHHHHhhhhc
Q 021688 144 NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKL 176 (309)
Q Consensus 144 ~~~I~l~~~ll~~l~~~~El~aVlaHElgH~~~ 176 (309)
.+.|.++-+= .. |..++.|++|||.-|..+
T Consensus 124 ~~ki~l~l~p--~~-~~~~v~aliaHE~HH~~R 153 (280)
T COG5504 124 PGKIMLWLVP--SS-TITSVPALIAHEYHHNCR 153 (280)
T ss_pred CceEEEEEec--CC-CccchHHHHHHHHHhhhe
Confidence 3455555432 25 889999999999999775
No 139
>PF13994 PgaD: PgaD-like protein
Probab=41.57 E-value=1.4e+02 Score=23.21 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 021688 31 WLFFRDMIKGMIL---AIVLGPPIVSAIIIIVQ 60 (309)
Q Consensus 31 ~~~~~~~~~~~~l---~~~l~~~~~~~~~~i~~ 60 (309)
...+.|.+.+.+. -+-+..|++.++.+++.
T Consensus 12 ~~r~~~~~lT~~~W~~~~yL~~pl~~ll~~ll~ 44 (138)
T PF13994_consen 12 HQRLIDYFLTLLFWGGFIYLWRPLLTLLAWLLG 44 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344454444433 33445566666777654
No 140
>PRK01844 hypothetical protein; Provisional
Probab=41.48 E-value=60 Score=22.31 Aligned_cols=33 Identities=9% Similarity=0.130 Sum_probs=17.6
Q ss_pred HhhhHhhhhhccccccCCCchHHHHHHHHHHHcCCCC
Q 021688 83 TLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPL 119 (309)
Q Consensus 83 ~~~p~~i~~l~~~~~pl~~~~L~~~i~~l~~~~g~~~ 119 (309)
++.-.+...-+.+-.|+++ +.++.+..+.|-++
T Consensus 23 f~ark~~~k~lk~NPpine----~mir~Mm~QMGqkP 55 (72)
T PRK01844 23 FIARKYMMNYLQKNPPINE----QMLKMMMMQMGQKP 55 (72)
T ss_pred HHHHHHHHHHHHHCCCCCH----HHHHHHHHHhCCCc
Confidence 3333444555555556664 45566666666553
No 141
>PRK01415 hypothetical protein; Validated
Probab=40.78 E-value=40 Score=29.33 Aligned_cols=43 Identities=14% Similarity=0.138 Sum_probs=35.2
Q ss_pred hccccccCCCc-hHHHHHHHHHHHcCCCCCceEEEeCCCCCCCccEEEec
Q 021688 92 LFNKFTPLPEG-ELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYG 140 (309)
Q Consensus 92 l~~~~~pl~~~-~L~~~i~~l~~~~g~~~~~i~v~~~~~~s~~~NA~~~G 140 (309)
.|.++.|++|+ ++++.+.++|++.|+. .+|++-+. ..|+.+.|
T Consensus 9 ~fY~f~~i~~~~~~~~~l~~~~~~~~~~-G~i~la~E-----GIN~tisg 52 (247)
T PRK01415 9 SAYSFVNIEEPANLIPKLLLIGKRKYVR-GTILLANE-----GFNGSFSG 52 (247)
T ss_pred EEEccccCCCHHHHHHHHHHHHHHcCCe-eEEEEccC-----ccceEeeC
Confidence 56778999875 5889999999999986 68888764 58998887
No 142
>PF05182 Fip1: Fip1 motif; InterPro: IPR007854 This short motif is about 40 amino acids in length and is found in the Fip1 protein that is a component of a Saccharomyces cerevisiae pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase []. This region of Fip1 is needed for the interaction with the Yth1 subunit of the complex and for specific polyadenylation of the cleaved mRNA precursor [].
Probab=39.81 E-value=17 Score=22.47 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=15.5
Q ss_pred ccCCCCCCHHHHHHHHHH
Q 021688 22 RHGFNKQTIWLFFRDMIK 39 (309)
Q Consensus 22 ~~g~~~~~~~~~~~~~~~ 39 (309)
.|||+..|+..++..+-.
T Consensus 25 NYGf~E~tW~~Y~~kq~~ 42 (45)
T PF05182_consen 25 NYGFNEETWREYCKKQRQ 42 (45)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 599999999999987653
No 143
>cd06162 S2P-M50_PDZ_SREBP Sterol regulatory element-binding protein (SREBP) Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50A), regulates intramembrane proteolysis (RIP) of SREBP and is part of a signal transduction mechanism involved in sterol and lipid metabolism. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of SREBPs from membranes of the endoplasmic reticulum (ER). These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. The first cleavage occurs at Site-1 within the ER lumen to generate an intermediate that is subsequently released from the membrane by cleavage at Site-2, which lies within the first transmembrane domain. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD family. This group appears to be limited to eumetazoan proteins and contains one PDZ domain.
Probab=39.16 E-value=18 Score=31.98 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhhhhc
Q 021688 162 EIVAVIAHELGHWKL 176 (309)
Q Consensus 162 El~aVlaHElgH~~~ 176 (309)
=+.+|+.||+||..-
T Consensus 134 l~isvvvHElgHal~ 148 (277)
T cd06162 134 LLISGVVHEMGHGVA 148 (277)
T ss_pred HHHHHHHHHHHHHHH
Confidence 467899999999763
No 144
>COG4823 AbiF Abortive infection bacteriophage resistance protein [Defense mechanisms]
Probab=39.11 E-value=21 Score=31.03 Aligned_cols=14 Identities=57% Similarity=0.738 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHhh
Q 021688 160 DEEIVAVIAHELGH 173 (309)
Q Consensus 160 ~~El~aVlaHElgH 173 (309)
+-++..|+||++||
T Consensus 89 Et~iKs~iAyllg~ 102 (299)
T COG4823 89 ETEIKSVIAYLLGH 102 (299)
T ss_pred HHHHHHHHHHHhcc
Confidence 56799999999999
No 145
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=38.64 E-value=3.1e+02 Score=25.09 Aligned_cols=27 Identities=15% Similarity=0.303 Sum_probs=19.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 021688 25 FNKQTIWLFFRDMIKGMILAIVLGPPI 51 (309)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~l~~~~ 51 (309)
||.++..++++..+|..+++.+....+
T Consensus 130 FS~~~l~el~K~llK~~~~~~v~~~~~ 156 (342)
T TIGR01404 130 FSLRSLKELLKSILKLVALALIFYLFL 156 (342)
T ss_pred cCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888888877766655443
No 146
>PRK01844 hypothetical protein; Provisional
Probab=36.20 E-value=46 Score=22.85 Aligned_cols=10 Identities=0% Similarity=0.288 Sum_probs=4.4
Q ss_pred chHHHHHHHH
Q 021688 102 GELREKIEKL 111 (309)
Q Consensus 102 ~~L~~~i~~l 111 (309)
..++...+.+
T Consensus 58 kki~Q~m~~m 67 (72)
T PRK01844 58 KKINQMMSAM 67 (72)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 147
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=35.97 E-value=46 Score=30.15 Aligned_cols=60 Identities=12% Similarity=0.132 Sum_probs=41.2
Q ss_pred CchHHHHHHHHHHHcCCCCCceEEEeCCCCCCCccEEEeccCCCceeeecHhHHhhcCChhHHHHHHHHHHhhhhc
Q 021688 101 EGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKL 176 (309)
Q Consensus 101 ~~~L~~~i~~l~~~~g~~~~~i~v~~~~~~s~~~NA~~~G~~~~~~I~l~~~ll~~l~~~~El~aVlaHElgH~~~ 176 (309)
.+.+-+.++++..+.|+..+++..-- ++--+. .+.|-++++ + +++|+..-+-||.+|+.-
T Consensus 57 ~~av~~~Lk~ala~~gi~~k~aa~AV-------P~s~ai----tk~i~vp~~----l-de~eL~~~V~~ea~~y~P 116 (354)
T COG4972 57 YDAVASALKRALAKLGIKSKNAATAV-------PGSAAI----TKTIPVPDE----L-DEKELEDQVESEASRYIP 116 (354)
T ss_pred HHHHHHHHHHHHHhcCcchhhhhhhc-------Ccccee----eEEeccCCc----c-cHHHHHHHHHHHHhhcCC
Confidence 35677889999999999865443211 111111 355556655 5 999999999999999874
No 148
>COG4227 Antirestriction protein [DNA replication, recombination, and repair]
Probab=35.47 E-value=23 Score=30.89 Aligned_cols=27 Identities=26% Similarity=0.508 Sum_probs=20.4
Q ss_pred hcCChhHHHHHHHHHHhhhhcchHHHH
Q 021688 156 QCKNDEEIVAVIAHELGHWKLNHTMYS 182 (309)
Q Consensus 156 ~l~~~~El~aVlaHElgH~~~~h~~~~ 182 (309)
.+.+...-.+.+.||+||+..+.....
T Consensus 196 aF~da~~yyaTl~HElghwtgh~~rl~ 222 (316)
T COG4227 196 AFRDAINYYATLLHELGHWTGHEARLD 222 (316)
T ss_pred hccchHhHHHHHHHHhccccCchhhhh
Confidence 334777889999999999987655433
No 149
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=35.13 E-value=20 Score=37.31 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHhhhhcchHHHHH
Q 021688 160 DEEIVAVIAHELGHWKLNHTMYSF 183 (309)
Q Consensus 160 ~~El~aVlaHElgH~~~~h~~~~~ 183 (309)
...++-|+|||+||--.+....+-
T Consensus 321 k~~va~vIaHElAHQWFGNLVTm~ 344 (882)
T KOG1046|consen 321 KQRVAEVIAHELAHQWFGNLVTMK 344 (882)
T ss_pred HHHHHHHHHHHHHHHHhcCcccHh
Confidence 556999999999998887665444
No 150
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=35.03 E-value=1.2e+02 Score=20.97 Aligned_cols=26 Identities=23% Similarity=0.616 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHhhhHhhhhhccccccC
Q 021688 71 WAFMFVLSLVMMTLYPVLIAPLFNKFTPL 99 (309)
Q Consensus 71 ~~~~~~~~~~~~~~~p~~i~~l~~~~~pl 99 (309)
.++++++.+.+....|.+ |.+|+ .|+
T Consensus 39 ~~~~~g~~~~~lv~vP~W--p~y~r-~p~ 64 (76)
T PF06645_consen 39 YIYGAGVVLTLLVVVPPW--PFYNR-HPL 64 (76)
T ss_pred HHHHHHHHHHHhheeCCc--HhhcC-Ccc
Confidence 334444444445556655 55654 444
No 151
>PF04138 GtrA: GtrA-like protein; InterPro: IPR007267 Members of this entry belong to the GtrA family and are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane []. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyses the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b) []. This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and Listeria monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose [].; GO: 0000271 polysaccharide biosynthetic process, 0006810 transport, 0016021 integral to membrane
Probab=34.75 E-value=1.8e+02 Score=21.28 Aligned_cols=55 Identities=13% Similarity=0.152 Sum_probs=30.1
Q ss_pred hhccHHHhhhchhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhc
Q 021688 7 TDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIII-IVQKG 62 (309)
Q Consensus 7 ~~lp~~~y~~~~l~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-i~~~~ 62 (309)
+......--.|.+.+++-|..+..... .++...+.+..+++.++-.+... +.+..
T Consensus 34 ia~~~~~~~~f~ln~~~tF~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 89 (117)
T PF04138_consen 34 IAFIVAIIFNFILNRRFTFRSRGRSSR-WRQFLRFFVVYLLGLLLNTLILWLLVDWL 89 (117)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555677888888877665555 44444444444554444444433 33343
No 152
>PRK00523 hypothetical protein; Provisional
Probab=33.49 E-value=96 Score=21.31 Aligned_cols=9 Identities=0% Similarity=0.394 Sum_probs=3.7
Q ss_pred chHHHHHHH
Q 021688 102 GELREKIEK 110 (309)
Q Consensus 102 ~~L~~~i~~ 110 (309)
..++...+.
T Consensus 59 kki~Q~m~~ 67 (72)
T PRK00523 59 SQIKQVMRS 67 (72)
T ss_pred HHHHHHHHH
Confidence 344444433
No 153
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=33.36 E-value=5e+02 Score=25.92 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=20.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 021688 25 FNKQTIWLFFRDMIKGMILAIVLGPPI 51 (309)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~l~~~~ 51 (309)
||.++..++++..+|..+++.+....+
T Consensus 394 FS~k~l~el~K~l~K~~~i~~~~~~~~ 420 (609)
T PRK12772 394 FSMRSVMELLKDLTIITIVGIVGYKFL 420 (609)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888889999999877766555433
No 154
>PF03186 CobD_Cbib: CobD/Cbib protein; InterPro: IPR004485 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiB protein, which is involved in cobalamin biosynthesis and porphyrin biosynthesis. It converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group. It is part of the cob operon [].; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane
Probab=33.16 E-value=2.7e+02 Score=24.80 Aligned_cols=45 Identities=11% Similarity=0.291 Sum_probs=19.4
Q ss_pred cHHHhhhch--hhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021688 10 PFSLYSTFV--IEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQ 60 (309)
Q Consensus 10 p~~~y~~~~--l~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~ 60 (309)
|..+...+. +|+++.-... .+.+.+.+..+++.++...+...+..
T Consensus 23 Pv~~~g~~~~~l~~~~~~~~~------~~~~~G~l~~l~~v~~~~~~~~~l~~ 69 (295)
T PF03186_consen 23 PVVWIGRLISWLERKFNRGSS------QQRIAGILAWLLVVLPVLLVAWALLY 69 (295)
T ss_pred hHHHHHHHHHHHHHHhccccc------chhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 555555443 4554432211 34444554444444444443333333
No 155
>cd04275 ZnMc_pappalysin_like Zinc-dependent metalloprotease, pappalysin_like subfamily. The pregnancy-associated plasma protein A (PAPP-A or pappalysin-1) cleaves insulin-like growth factor-binding proteins 4 and 5, thereby promoting cell growth by releasing bound growth factor. This model includes pappalysins and related metalloprotease domains from all three kingdoms of life. The three-dimensional structure of an archaeal representative, ulilysin, has been solved.
Probab=32.98 E-value=7.8 Score=33.19 Aligned_cols=20 Identities=35% Similarity=0.627 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHhhhhc-chHH
Q 021688 161 EEIVAVIAHELGHWKL-NHTM 180 (309)
Q Consensus 161 ~El~aVlaHElgH~~~-~h~~ 180 (309)
....-++.||+||+-. .|+.
T Consensus 135 ~n~g~t~~HEvGH~lGL~HtF 155 (225)
T cd04275 135 YNLGDTATHEVGHWLGLYHTF 155 (225)
T ss_pred ccccceeEEeccceeeeeeee
Confidence 3466789999999863 4443
No 156
>PRK11767 SpoVR family protein; Provisional
Probab=32.20 E-value=42 Score=32.15 Aligned_cols=68 Identities=24% Similarity=0.302 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHcCCCC-C-ceEEEeCCCCCCCccEEEe-------------------------ccCCC-ceeeecHh--
Q 021688 103 ELREKIEKLASSLKFPL-K-KLFVVDGSTRSSHSNAYMY-------------------------GFFKN-KRIVLYDT-- 152 (309)
Q Consensus 103 ~L~~~i~~l~~~~g~~~-~-~i~v~~~~~~s~~~NA~~~-------------------------G~~~~-~~I~l~~~-- 152 (309)
+..++|+++|+..|+.. | ++-|++.+ ...++++. |..+- --|||+++
T Consensus 19 ~~~~~I~~iA~~~GLD~yp~~~EIi~~e---qml~~~as~GmP~rY~HWsfGk~y~~~~~~Y~~gl~glaYEiVINSnPc 95 (498)
T PRK11767 19 RYLDEIERVAKEYGLDTYPNQIEVITAE---QMMDAYSSVGMPINYRHWSFGKHFIETEQLYRRGQMGLAYEIVINSNPC 95 (498)
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEECHH---HHHHHHHhcCCCCCCCcccccHHHHHHHHHHhcCCCCCceEEEecCchH
Confidence 34678889999999973 3 44444431 12333332 22111 24677765
Q ss_pred ---HHhhcCChhHHHHHHHH-HHhhh
Q 021688 153 ---LIQQCKNDEEIVAVIAH-ELGHW 174 (309)
Q Consensus 153 ---ll~~l~~~~El~aVlaH-ElgH~ 174 (309)
|++.= +.-.-+-|+|| ++||.
T Consensus 96 iAyLme~N-tl~~q~LViAHv~yGHn 120 (498)
T PRK11767 96 IAYLMEEN-TMTMQALVIAHACYGHN 120 (498)
T ss_pred HHHHhccC-cHHHHHHHHHHHHHhhh
Confidence 44444 66678899999 69995
No 157
>cd06158 S2P-M50_like_1 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with a minimal core protein and no PDZ domains.
Probab=31.86 E-value=28 Score=28.59 Aligned_cols=13 Identities=31% Similarity=0.531 Sum_probs=11.0
Q ss_pred HHHHHHHHHhhhh
Q 021688 163 IVAVIAHELGHWK 175 (309)
Q Consensus 163 l~aVlaHElgH~~ 175 (309)
+-++..||+||-.
T Consensus 9 ~~~i~~HE~aHa~ 21 (181)
T cd06158 9 LLAITLHEFAHAY 21 (181)
T ss_pred HHHHHHHHHHHHH
Confidence 4588999999976
No 158
>PRK06298 type III secretion system protein; Validated
Probab=31.08 E-value=4.3e+02 Score=24.39 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=18.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 021688 25 FNKQTIWLFFRDMIKGMILAIVLGPP 50 (309)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~l~~~ 50 (309)
||.++...+++..+|..+++.+....
T Consensus 132 FS~~~lvel~KsllK~~~~~~v~~~~ 157 (356)
T PRK06298 132 FKVKTLIELLKSILKISGAALILYIV 157 (356)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888877766555543
No 159
>PF14521 Aspzincin_M35: Lysine-specific metallo-endopeptidase ; PDB: 2X3C_A 2X3A_A 2X3B_A 1GE7_B 1GE6_A 1GE5_A 1G12_A.
Probab=30.81 E-value=1.1e+02 Score=24.11 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=21.3
Q ss_pred ceeeecHhHHhhc-CChhHHHHHHHHHHhhh
Q 021688 145 KRIVLYDTLIQQC-KNDEEIVAVIAHELGHW 174 (309)
Q Consensus 145 ~~I~l~~~ll~~l-~~~~El~aVlaHElgH~ 174 (309)
..|.|-....+.- ...+.-+..|.||+.|+
T Consensus 77 ~~IyLc~~F~~~p~~g~~Sk~~TLiHE~SHf 107 (148)
T PF14521_consen 77 YTIYLCPAFFSAPTTGKDSKEGTLIHEWSHF 107 (148)
T ss_dssp TEEEE-HHHHHS-SSSTT-HHHHHHHHHHHS
T ss_pred eEEEEChhhcCCCCCCCCchHHHHHHhhhhh
Confidence 5799998877632 14577899999999993
No 160
>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.
Probab=30.30 E-value=51 Score=29.22 Aligned_cols=25 Identities=16% Similarity=0.329 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHh
Q 021688 64 PYLAIYLWAFMFVLSLVMMTLYPVL 88 (309)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~p~~ 88 (309)
+.||++.+.+.++++++..+.||.+
T Consensus 27 P~ww~~~f~~~i~~~~~y~~~yp~~ 51 (285)
T TIGR00782 27 PRWWLWTFYATIVWGFGYLVAYPAW 51 (285)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5788888888888888877777854
No 161
>PF13402 M60-like: Peptidase M60-like family; PDB: 4FCA_A.
Probab=30.17 E-value=1.9e+02 Score=25.58 Aligned_cols=40 Identities=20% Similarity=0.058 Sum_probs=20.8
Q ss_pred ccEEEeccCCCceeeecHhHHh-hcCChhHH---HHHHHHHHhhhhcch
Q 021688 134 SNAYMYGFFKNKRIVLYDTLIQ-QCKNDEEI---VAVIAHELGHWKLNH 178 (309)
Q Consensus 134 ~NA~~~G~~~~~~I~l~~~ll~-~l~~~~El---~aVlaHElgH~~~~h 178 (309)
..+++.| ..|....+..+ .+ +.+.+ .=-.+||+||..+.-
T Consensus 191 g~m~a~g----~~i~~~~~~~~~~l-~~~~~~~~~WG~~HE~GH~~Q~~ 234 (307)
T PF13402_consen 191 GYMHASG----YPIGFPPNWMNELL-NPNPLRKGGWGPWHELGHNHQQG 234 (307)
T ss_dssp -SEEEET----TEEEEETT--HHHH--HHHHHHH-HHHHHHHHHHH-BG
T ss_pred cceeecC----CcEEeeCcHHhccc-CHhHcCCCCeeehhhhhhhcCcc
Confidence 3455444 34555444333 34 55555 346899999988765
No 162
>PF15639 Tox-MPTase3: Metallopeptidase toxin 3
Probab=30.15 E-value=95 Score=23.91 Aligned_cols=57 Identities=16% Similarity=0.147 Sum_probs=36.4
Q ss_pred CCceEEEeCCCCCCCccEE--EeccCCCceeeecHhHHhhcCChhH---------HHHHHHHHHhhhhcchH
Q 021688 119 LKKLFVVDGSTRSSHSNAY--MYGFFKNKRIVLYDTLIQQCKNDEE---------IVAVIAHELGHWKLNHT 179 (309)
Q Consensus 119 ~~~i~v~~~~~~s~~~NA~--~~G~~~~~~I~l~~~ll~~l~~~~E---------l~aVlaHElgH~~~~h~ 179 (309)
.|.|.|.+.. ...|+ +++...+..|.|...+...+++..+ +..-+.||+-|+-+.+.
T Consensus 49 GP~IkI~~~~----~~~A~G~t~p~~~~~~i~I~~~lV~~~Ek~~~~~r~~~~~~v~~TlLHEliHw~~~q~ 116 (135)
T PF15639_consen 49 GPYIKITPLV----GGTAYGYTTPDDGSQVIRIDGDLVNMFEKGPGERRAGNVYLVGSTLLHELIHWGDDQN 116 (135)
T ss_pred CCEEEEeecc----cceeeeeecCCCCCcEEEeeHHHhhhhhcCCcccccceEEEeehHHHHHHHHhcchhc
Confidence 3667776642 11233 2222246778899999988754443 56778999999987664
No 163
>cd04283 ZnMc_hatching_enzyme Zinc-dependent metalloprotease, hatching enzyme-like subfamily. Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion.
Probab=30.13 E-value=24 Score=29.13 Aligned_cols=12 Identities=42% Similarity=0.423 Sum_probs=10.6
Q ss_pred HHHHHHHHhhhh
Q 021688 164 VAVIAHELGHWK 175 (309)
Q Consensus 164 ~aVlaHElgH~~ 175 (309)
.+++.||++|..
T Consensus 78 ~G~i~HEl~HaL 89 (182)
T cd04283 78 KGIIQHELLHAL 89 (182)
T ss_pred cchHHHHHHHHh
Confidence 589999999975
No 164
>PF06582 DUF1136: Repeat of unknown function (DUF1136); InterPro: IPR010939 This family consists of several eukaryote specific repeats of unknown function. This repeat seems to always be found with IPR007110 from INTERPRO.
Probab=30.13 E-value=29 Score=19.10 Aligned_cols=18 Identities=22% Similarity=0.722 Sum_probs=15.4
Q ss_pred cCCCCHHHHHHHcccccc
Q 021688 289 YSHPPLVERLAAIDEPDK 306 (309)
Q Consensus 289 ~tHP~~~~Ri~~l~~~~~ 306 (309)
+-||...+||..|++..+
T Consensus 5 TQhp~~lekIq~LE~~~~ 22 (28)
T PF06582_consen 5 TQHPESLEKIQELEDPSR 22 (28)
T ss_pred ccCHHHHHHHHHHHcccc
Confidence 569999999999988765
No 165
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=29.99 E-value=3.2e+02 Score=22.58 Aligned_cols=10 Identities=0% Similarity=-0.094 Sum_probs=3.8
Q ss_pred HhhhhcchHH
Q 021688 171 LGHWKLNHTM 180 (309)
Q Consensus 171 lgH~~~~h~~ 180 (309)
+-+....|+.
T Consensus 113 I~~~v~~~P~ 122 (199)
T PF10112_consen 113 IFKYVEKDPE 122 (199)
T ss_pred HHHHHHHCHH
Confidence 3333334443
No 166
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=29.70 E-value=37 Score=31.30 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=16.2
Q ss_pred ChhHHHHHHHHHHhhhhcc
Q 021688 159 NDEEIVAVIAHELGHWKLN 177 (309)
Q Consensus 159 ~~~El~aVlaHElgH~~~~ 177 (309)
+.+...+.||||+=|..+-
T Consensus 135 ~~~~~~sTlAHEfQHmInf 153 (366)
T PF10460_consen 135 GPDTVYSTLAHEFQHMINF 153 (366)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999854
No 167
>cd04281 ZnMc_BMP1_TLD Zinc-dependent metalloprotease; BMP1/TLD-like subfamily. BMP1 (Bone morphogenetic protein 1) and TLD (tolloid)-like metalloproteases play vital roles in extracellular matrix formation, by cleaving precursor proteins such as enzymes, structural proteins, and proteins involved in the mineralization of the extracellular matrix. The drosophila protein tolloid and its Xenopus homologue xolloid cleave and inactivate Sog and chordin, respectively, which are inhibitors of Dpp (the Drosophila decapentaplegic gene product) and its homologue BMP4, involved in dorso-ventral patterning.
Probab=29.46 E-value=24 Score=29.59 Aligned_cols=13 Identities=38% Similarity=0.616 Sum_probs=11.0
Q ss_pred HHHHHHHHhhhhc
Q 021688 164 VAVIAHELGHWKL 176 (309)
Q Consensus 164 ~aVlaHElgH~~~ 176 (309)
.+++.||++|...
T Consensus 88 ~Gti~HEl~HaLG 100 (200)
T cd04281 88 FGIVVHELGHVIG 100 (200)
T ss_pred CchHHHHHHHHhc
Confidence 4899999999763
No 168
>PF01400 Astacin: Astacin (Peptidase family M12A) This Prosite motif covers only the active site.; InterPro: IPR001506 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12A (astacin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The astacin () family of metalloendopeptidases encompasses a range of proteins found in hydra to humans, in mature and developmental systems []. Their functions include activation of growth factors, degradation of polypeptides, and processing of extracellular proteins []. The proteins are synthesised with N-terminal signal and pro-enzyme sequences, and many contain multiple domains C-terminal to the protease domain. They are either secreted from cells, or are associated with the plasma membrane. The astacin molecule adopts a kidney shape, with a deep active-site cleft between its N- and C-terminal domains []. The zinc ion, which lies at the bottom of the cleft, exhibits a unique penta-coordinated mode of binding, involving 3 histidine residues, a tyrosine and a water molecule (which is also bound to the carboxylate side chain of Glu93) []. The N-terminal domain comprises 2 alpha-helices and a 5-stranded beta-sheet. The overall topology of this domain is shared by the archetypal zinc-endopeptidase thermolysin. Astacin protease domains also share common features with serralysins, matrix metalloendopeptidases, and snake venom proteases; they cleave peptide bonds in polypeptides such as insulin B chain and bradykinin, and in proteins such as casein and gelatin; and they have arylamidase activity [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3LQB_A 3EDH_A 3EDG_A 3EDI_A 1IAE_A 1IAB_A 1IAA_A 1AST_A 1IAC_A 1QJJ_A ....
Probab=28.94 E-value=33 Score=28.47 Aligned_cols=13 Identities=54% Similarity=0.652 Sum_probs=10.8
Q ss_pred HHHHHHHHHhhhh
Q 021688 163 IVAVIAHELGHWK 175 (309)
Q Consensus 163 l~aVlaHElgH~~ 175 (309)
-.+++.||++|..
T Consensus 79 ~~~~i~HEl~HaL 91 (191)
T PF01400_consen 79 SVGTILHELGHAL 91 (191)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CccchHHHHHHHH
Confidence 3579999999975
No 169
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=28.81 E-value=29 Score=25.95 Aligned_cols=14 Identities=36% Similarity=0.314 Sum_probs=10.5
Q ss_pred HHHHHHHHHhhhhc
Q 021688 163 IVAVIAHELGHWKL 176 (309)
Q Consensus 163 l~aVlaHElgH~~~ 176 (309)
-+--++||++|+-+
T Consensus 79 C~~TL~HEL~H~WQ 92 (141)
T PHA02456 79 CRDTLAHELNHAWQ 92 (141)
T ss_pred hHHHHHHHHHHHHh
Confidence 45568999999754
No 170
>PF14079 DUF4260: Domain of unknown function (DUF4260)
Probab=28.81 E-value=1.5e+02 Score=22.43 Aligned_cols=36 Identities=17% Similarity=0.085 Sum_probs=21.2
Q ss_pred HHhcChhHHHHHHHHHHH-HHHHHHHhhhHhhhhhcc
Q 021688 59 VQKGGPYLAIYLWAFMFV-LSLVMMTLYPVLIAPLFN 94 (309)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~i~~l~~ 94 (309)
+...+-.||++...+++. ++.+.+...|+.-+-.+|
T Consensus 19 y~~~~~~Ww~f~~lll~PDLsmlGYl~g~kvGA~~YN 55 (113)
T PF14079_consen 19 YAQLGFSWWLFALLLLAPDLSMLGYLAGPKVGAICYN 55 (113)
T ss_pred HHHhCCcHHHHHHHHHcchHHHHHHHhcchHHHHHHH
Confidence 333444566665555444 677777777766555555
No 171
>PF11391 DUF2798: Protein of unknown function (DUF2798); InterPro: IPR021529 This family of proteins has no known function.
Probab=28.64 E-value=1.7e+02 Score=19.04 Aligned_cols=30 Identities=27% Similarity=0.452 Sum_probs=13.2
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021688 22 RHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAI 55 (309)
Q Consensus 22 ~~g~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 55 (309)
+.|++. .|+..++++..++..+..|+....
T Consensus 19 n~G~~~----~f~~~Wl~a~~~a~~vAfp~~l~v 48 (60)
T PF11391_consen 19 NVGFSD----GFFSRWLKAWLIAWPVAFPISLIV 48 (60)
T ss_pred HhCCch----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666 333344444444444444433333
No 172
>COG3930 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.76 E-value=72 Score=29.13 Aligned_cols=70 Identities=11% Similarity=0.189 Sum_probs=37.7
Q ss_pred ccCCCchHHHHHH----HHHHHcCCCCCceEEEeCCCCCCCccEEEeccCCCceeeecHhHHhhcCChhHHHHHHHHHHh
Q 021688 97 TPLPEGELREKIE----KLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELG 172 (309)
Q Consensus 97 ~pl~~~~L~~~i~----~l~~~~g~~~~~i~v~~~~~~s~~~NA~~~G~~~~~~I~l~~~ll~~l~~~~El~aVlaHElg 172 (309)
++.+++|+....+ -+.++.+- .-++|.-+.. +-...|.+-+- .-+++.|....+ + +++++.+++.||+|
T Consensus 183 k~~e~~E~~~~~qa~~~~v~k~~e~-~i~~~~~~~~--g~~Ara~v~~d-~pp~lli~~~t~--~-~~~~V~~Ll~HEig 255 (434)
T COG3930 183 KTLEAKEVVPILQADLNTVFKEEEE-MIRVYESDTA--GFVARAEVRDD-LPPTLLIRRDTL--M-EERRVRALLSHEIG 255 (434)
T ss_pred ccccccccchHHHHHHHHHHHHhhh-eeeeeecCcc--chhhhHhhcCC-CCcceeehhhhh--c-CHHHHHHHHHhhhh
Confidence 4455666644443 33333221 2355555421 12233333331 124666776654 4 89999999999999
Q ss_pred h
Q 021688 173 H 173 (309)
Q Consensus 173 H 173 (309)
=
T Consensus 256 V 256 (434)
T COG3930 256 V 256 (434)
T ss_pred e
Confidence 3
No 173
>PRK12438 hypothetical protein; Provisional
Probab=27.28 E-value=6.1e+02 Score=26.99 Aligned_cols=58 Identities=12% Similarity=0.163 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHhhhhhccccccC----CCchHHHHHHHHHHHcCCCCCceEE
Q 021688 65 YLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPL----PEGELREKIEKLASSLKFPLKKLFV 124 (309)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~p~~i~~l~~~~~pl----~~~~L~~~i~~l~~~~g~~~~~i~v 124 (309)
.+.....+++++.+++...++|..+.+.. .+|- |.|-+..-|+.-.+..|+...++-.
T Consensus 284 rlp~i~~~llv~~~iv~g~i~P~~vQ~f~--V~PNe~~~E~pYI~rNI~aTR~AYgL~~d~v~~ 345 (991)
T PRK12438 284 RIPAMAAALLVLSAILVGGLWPLLMEQFS--VRPNAADVESPYIERNIEATRQAYGIGGDWVQY 345 (991)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhheeEE--ECcchhhhhhHHHHHHHHHHHHHhCCCccceEE
Confidence 33444555555666666778897665533 3443 3456777888888888986555543
No 174
>PF02102 Peptidase_M35: Deuterolysin metalloprotease (M35) family; InterPro: IPR001384 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M35 (deuterolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Deuterolysin is a microbial zinc-containing metalloprotease that shows some similarity to thermolysin []. The protein is expressed with a possible 19-residue signal sequence, a 155-residue propeptide, and an active peptide of 177 residues []. The latter contains an HEXXH motif towards the C terminus, but the other zinc ligands are as yet undetermined [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 1EB6_A.
Probab=27.20 E-value=1.8e+02 Score=26.89 Aligned_cols=72 Identities=14% Similarity=0.189 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHcCCC---CCceEEEeCCCCCCCccEEEeccCCCceeeecHhHHhhcC------ChhHHHHHHHHHHhh
Q 021688 103 ELREKIEKLASSLKFP---LKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCK------NDEEIVAVIAHELGH 173 (309)
Q Consensus 103 ~L~~~i~~l~~~~g~~---~~~i~v~~~~~~s~~~NA~~~G~~~~~~I~l~~~ll~~l~------~~~El~aVlaHElgH 173 (309)
.+.+++++++++++-. ..+++--|.. ..-..|..++-.+....|+.-+..++.+. .......++-||+.|
T Consensus 229 ~Va~~f~aIA~Ec~s~~~g~~t~~C~D~~-~~C~~~vlAYT~p~~~~I~~Cp~ff~~lp~~~~~C~~qDqatt~LHE~TH 307 (359)
T PF02102_consen 229 TVASRFNAIASECSSTSSGSTTYYCTDPY-GYCSSGVLAYTLPSQNQIVNCPIFFSDLPALSNRCHAQDQATTTLHEMTH 307 (359)
T ss_dssp HHHHHHHHHHHHHT-SB-SS-EEESS-SS-S---TT--EEEEGGGTEEEE-HHHHHH--SS--STT---HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccCCCCceEEEEECCC-CccCCCeEEEEEcCCCeEEECchhhccCCCccccccCCCccchhhhhhhc
Confidence 4667778888887642 1233333321 11234544444555677777666554330 345678999999999
Q ss_pred hh
Q 021688 174 WK 175 (309)
Q Consensus 174 ~~ 175 (309)
..
T Consensus 308 ~~ 309 (359)
T PF02102_consen 308 AP 309 (359)
T ss_dssp -T
T ss_pred cc
Confidence 96
No 175
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=27.12 E-value=79 Score=20.15 Aligned_cols=17 Identities=18% Similarity=0.116 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021688 66 LAIYLWAFMFVLSLVMM 82 (309)
Q Consensus 66 ~~~~~~~~~~~~~~~~~ 82 (309)
||+++.+..++++..+.
T Consensus 3 wWvY~vi~gI~~S~ym~ 19 (52)
T PF14147_consen 3 WWVYFVIAGIIFSGYMA 19 (52)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 67777666666655443
No 176
>cd06461 M2_ACE Peptidase family M2 Angiotensin converting enzyme (ACE, EC 3.4.15.1) is a membrane-bound, zinc dependent dipeptidase that catalyzes the conversion of the decapeptide angiotensin I to the potent vasopressor ocatapeptide angiotensin II, by removing two C-terminal amino acids. There are two forms of the enzyme in humans, the ubiquitous somatic ACE and the sperm-specific germinal ACE, both encoded by the same gene through transcription from alternative promoters. Somatic ACE has two tandem active sites with distinct catalytic properties, whereas germinal ACE, the function of which is largely unknown, has just a single active site. Recently, an ACE homolog, ACE2, has been identified in humans that differs from ACE; it preferentially removes carboxy-terminal hydrophobic or basic amino acids and appears to be important in cardiac function. ACE homologs (also known as members of the M2 gluzincin family) have been found in a wide variety of species, including those that neither h
Probab=26.87 E-value=77 Score=30.51 Aligned_cols=65 Identities=25% Similarity=0.438 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHcCCC-CCceEEEeC--CCCCCCccEEEec----cCC--CceeeecHhHHhhcCChhHHHHHHHHHHhhh
Q 021688 104 LREKIEKLASSLKFP-LKKLFVVDG--STRSSHSNAYMYG----FFK--NKRIVLYDTLIQQCKNDEEIVAVIAHELGHW 174 (309)
Q Consensus 104 L~~~i~~l~~~~g~~-~~~i~v~~~--~~~s~~~NA~~~G----~~~--~~~I~l~~~ll~~l~~~~El~aVlaHElgH~ 174 (309)
+.+..++.-+.+|++ .|+.+.-.+ +++... ..++.. ++. ..+|..... . |.+.+..+. ||+||+
T Consensus 186 mf~~~~~ff~smgL~dl~~~fw~~s~~~rp~k~-~~~C~~sawd~~~~~d~rI~~c~~----~-t~~D~~t~~-HE~GH~ 258 (477)
T cd06461 186 MFKEAEEFFTSLGLPPMPPSFWTKSMLEKPTDR-EVVCHASAWDFYNGKDFRIKMCTK----V-NMEDFVTVH-HEMGHI 258 (477)
T ss_pred HHHHHHHHHHHCCCCcCChHHHhhccccCCCCC-CCccCcccccCCCCCCcceeeCCC----C-CHHHHHHHH-HHHHHH
Confidence 344455566677886 332221110 111122 344444 543 344443332 2 555566544 999999
Q ss_pred h
Q 021688 175 K 175 (309)
Q Consensus 175 ~ 175 (309)
.
T Consensus 259 ~ 259 (477)
T cd06461 259 Q 259 (477)
T ss_pred H
Confidence 7
No 177
>PF02128 Peptidase_M36: Fungalysin metallopeptidase (M36); InterPro: IPR001842 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M36 (fungalysin family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. Fungalysin is produced by fungi, Aspergillus and other species, to aid degradation of host lung cell walls on infection. The enzyme is a 42kDa single chain protein, with a pH optimum of 7.5-8.0 and optimal temperature of 60 celcius [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0005615 extracellular space
Probab=26.63 E-value=23 Score=32.65 Aligned_cols=49 Identities=24% Similarity=0.249 Sum_probs=32.5
Q ss_pred CCCccEEEe----ccCCCceeeecHhHH---hhcCChhHHHHHHHHHHhhhhcchHH
Q 021688 131 SSHSNAYMY----GFFKNKRIVLYDTLI---QQCKNDEEIVAVIAHELGHWKLNHTM 180 (309)
Q Consensus 131 s~~~NA~~~----G~~~~~~I~l~~~ll---~~l~~~~El~aVlaHElgH~~~~h~~ 180 (309)
+..-||.+. |..++-++++.++-- -.- |-+.=..|++||.||-...-..
T Consensus 147 sg~NNAnf~TPpDG~~prMqMylw~~~~~~~p~r-Dg~~D~~Ii~HEy~HGiSnRLv 202 (378)
T PF02128_consen 147 SGTNNANFATPPDGQPPRMQMYLWTPSTPASPNR-DGDFDNGIIAHEYGHGISNRLV 202 (378)
T ss_pred CCcCCceeecCCCCCCceeeEEEecCCCCcCCCC-CcccccCeeEEeeccccccccc
Confidence 455678775 444556777777643 222 5566678999999998866543
No 178
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=26.36 E-value=2.6e+02 Score=22.21 Aligned_cols=22 Identities=23% Similarity=0.116 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCh
Q 021688 43 LAIVLGPPIVSAIIIIVQKGGP 64 (309)
Q Consensus 43 l~~~l~~~~~~~~~~i~~~~~~ 64 (309)
++..++...+.++.+-...+|.
T Consensus 40 ~~M~~~y~~~~~lm~~spy~G~ 61 (155)
T PF10777_consen 40 LAMYAAYLAVAALMYYSPYFGL 61 (155)
T ss_pred HHHHHHHHHHHHHHHhcchhhh
Confidence 3334443344444454455543
No 179
>PF09973 DUF2208: Predicted membrane protein (DUF2208); InterPro: IPR009198 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain three or more transmembrane segments.
Probab=26.22 E-value=4.3e+02 Score=22.81 Aligned_cols=22 Identities=14% Similarity=0.096 Sum_probs=12.1
Q ss_pred hcChhHHHHHHHHHHHHHHHHH
Q 021688 61 KGGPYLAIYLWAFMFVLSLVMM 82 (309)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~ 82 (309)
.+|..||..+.+..+++..+..
T Consensus 20 ~~p~y~~~~filYfiv~~~i~~ 41 (233)
T PF09973_consen 20 FFPQYYFEVFILYFIVFFGIMI 41 (233)
T ss_pred hccHHHHHHHHHHHHHHHHHHH
Confidence 4566776655555555544443
No 180
>PF05548 Peptidase_M11: Gametolysin peptidase M11; InterPro: IPR008752 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M11 (gametolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The type example is gametolysin from the unicellular biflagellated alga, Chlamydomonas reinhardtii Gametolysin is a zinc-containing metallo-protease, which is responsible for the degradation of the cell wall. Homologues of gametolysin have also been reported in the simple multicellular organism, Volvox [, ].
Probab=25.76 E-value=33 Score=30.96 Aligned_cols=11 Identities=64% Similarity=0.794 Sum_probs=9.4
Q ss_pred HHHHHHHhhhh
Q 021688 165 AVIAHELGHWK 175 (309)
Q Consensus 165 aVlaHElgH~~ 175 (309)
+++.||+||=.
T Consensus 152 ~~~~HElgHN~ 162 (314)
T PF05548_consen 152 ATIMHELGHNL 162 (314)
T ss_pred HHHHHHhhhhc
Confidence 59999999954
No 181
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=25.56 E-value=69 Score=19.54 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=17.0
Q ss_pred CchHHHHHHHHHHHcCCCC
Q 021688 101 EGELREKIEKLASSLKFPL 119 (309)
Q Consensus 101 ~~~L~~~i~~l~~~~g~~~ 119 (309)
++++.+.+++++++.|+|.
T Consensus 10 ~~el~~~L~~ls~~t~i~~ 28 (44)
T PF12651_consen 10 DKELYEKLKELSEETGIPK 28 (44)
T ss_pred CHHHHHHHHHHHHHHCCCH
Confidence 5799999999999999874
No 182
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=25.47 E-value=3.8e+02 Score=21.92 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=15.1
Q ss_pred hhhccccccCCCchHHHHHHHHHH
Q 021688 90 APLFNKFTPLPEGELREKIEKLAS 113 (309)
Q Consensus 90 ~~l~~~~~pl~~~~L~~~i~~l~~ 113 (309)
.|++...+|+.+=+....+.++|-
T Consensus 117 nP~fp~~~~~~~l~~nTiiT~~Ci 140 (173)
T PF11085_consen 117 NPIFPMIKPVTELDWNTIITTLCI 140 (173)
T ss_pred cccccCChhhhhCchhHHHHHHHH
Confidence 455656667766556666777664
No 183
>PRK12773 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=24.98 E-value=7.1e+02 Score=24.94 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=17.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 021688 26 NKQTIWLFFRDMIKGMILAIVLGPPI 51 (309)
Q Consensus 26 ~~~~~~~~~~~~~~~~~l~~~l~~~~ 51 (309)
|.++..++++..+|..+++.++...+
T Consensus 430 S~rsLVELlKSLlKV~lvg~V~y~vl 455 (646)
T PRK12773 430 TRQTLFNLGKSLAKVGLIAWVSYIII 455 (646)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777888888777666554433
No 184
>cd04280 ZnMc_astacin_like Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the active protease domain, which is consequently always found at the N-terminus in multi-domain architectures. This family includes: astacin, a digestive enzyme from Crayfish; meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain, proteins involved in (bone) morphogenesis, tolloid from drosophila, and the sea urchin SPAN protein, which may also play a role in development.
Probab=24.66 E-value=32 Score=28.22 Aligned_cols=13 Identities=38% Similarity=0.319 Sum_probs=11.1
Q ss_pred HHHHHHHHhhhhc
Q 021688 164 VAVIAHELGHWKL 176 (309)
Q Consensus 164 ~aVlaHElgH~~~ 176 (309)
.+++.||+||...
T Consensus 75 ~g~v~HE~~HalG 87 (180)
T cd04280 75 LGTIVHELMHALG 87 (180)
T ss_pred CchhHHHHHHHhc
Confidence 6899999999753
No 185
>PF01457 Peptidase_M8: Leishmanolysin This Prosite motif covers only the active site. This is family M8 in the peptidase classification. ; InterPro: IPR001577 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M8 (leishmanolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Leishmanolysin is an enzyme found in the eukaryotes including Leishmania and related parasitic protozoa []. The endopeptidase is the most abundant protein on the cell surface during the promastigote stage of the parasite, and is attached to the membrane by a glycosylphosphatidylinositol anchor []. In the amastigote form, the parasite lives in lysosomes of host macrophages, producing a form of the protease that has an acidic pH optimum []. This differs from most other metalloproteases and may be an adaptation to the environment in which the organism survives [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0007155 cell adhesion, 0016020 membrane; PDB: 1LML_A.
Probab=24.62 E-value=61 Score=31.55 Aligned_cols=33 Identities=18% Similarity=0.121 Sum_probs=18.9
Q ss_pred ceeeecHhHHhhcCChhHHHHHHHHHHhhhhcch
Q 021688 145 KRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNH 178 (309)
Q Consensus 145 ~~I~l~~~ll~~l~~~~El~aVlaHElgH~~~~h 178 (309)
+.|-+....+... ..++..-+++||++|...=.
T Consensus 193 G~in~~p~~i~~~-~~~~~~~~~~HEi~HaLGFs 225 (521)
T PF01457_consen 193 GVININPSYIPSF-YFQEFFRTVIHEIAHALGFS 225 (521)
T ss_dssp EEEE--GGG---S---HHHHHHHHHHHHHHTT-S
T ss_pred EEEEEchhHccch-hhhcccceeeeeeeeeeeec
Confidence 4455665555544 56788889999999987533
No 186
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=24.59 E-value=36 Score=32.12 Aligned_cols=12 Identities=50% Similarity=0.947 Sum_probs=9.8
Q ss_pred HHHHHHHHhhhh
Q 021688 164 VAVIAHELGHWK 175 (309)
Q Consensus 164 ~aVlaHElgH~~ 175 (309)
..|+-||+||+.
T Consensus 15 ~~v~~HE~gH~~ 26 (420)
T TIGR00054 15 VLIFVHELGHFL 26 (420)
T ss_pred HHHHHHhHHHHH
Confidence 357889999975
No 187
>PF10462 Peptidase_M66: Peptidase M66; InterPro: IPR019503 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This is a family of metallopeptidases belonging to MEROPS peptidase family M66 (StcE peptidase, clan MA). The StcE peptidase is a virulence factor found in Shiga toxigenic Escherichia coli strains. StcE peptidase cleaves C1 esterase inhibitor []. The SwissProt proteins in this entry have been name "Dictomallein". ; GO: 0004222 metalloendopeptidase activity; PDB: 3UJZ_A.
Probab=24.32 E-value=41 Score=30.23 Aligned_cols=17 Identities=35% Similarity=0.257 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHhhhhc
Q 021688 160 DEEIVAVIAHELGHWKL 176 (309)
Q Consensus 160 ~~El~aVlaHElgH~~~ 176 (309)
......+++||+||--.
T Consensus 190 ~~s~~~~f~HE~GH~~G 206 (305)
T PF10462_consen 190 DYSYGNEFSHELGHNFG 206 (305)
T ss_dssp SS-SHHHHHHHHHHTTT
T ss_pred ccCccceeehhhhhhcC
Confidence 34468899999999653
No 188
>cd06457 M3A_MIP Peptidase M3 mitochondrial intermediate peptidase (MIP; EC 3.4.24.59) belongs to the widespread subfamily M3A, that show similarity to the Thimet oligopeptidase (TOP). It is one of three peptidases responsible for the proteolytic processing of both, nuclear and mitochondrial encoded precursor polypeptides targeted to the various subcompartments of the mitochondria. It cleaves intermediate-size proteins initially processed by mitochondrial processing peptidase (MPP) to yield a processing intermediate with a typical N-terminal octapeptide that is sequentially cleaved by MIP to mature-size protein. MIP cleaves precursor proteins of respiratory components, including subunits of the electron transport chain and tri-carboxylic acid cycle enzymes, and components of the mitochondrial genetic machinery, including ribosomal proteins, translation factors, and proteins required for mitochondrial DNA metabolism. It has been suggested that the human MIP (HMIP polypeptide; gene symbo
Probab=24.03 E-value=35 Score=32.59 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=15.1
Q ss_pred ChhHHHHHHHHHHhhhhcchH
Q 021688 159 NDEEIVAVIAHELGHWKLNHT 179 (309)
Q Consensus 159 ~~~El~aVlaHElgH~~~~h~ 179 (309)
+.+|+. .|+||+||..|.-.
T Consensus 245 ~~~~v~-TLfHEfGHalH~~l 264 (458)
T cd06457 245 SPHEVE-TLFHEMGHAMHSML 264 (458)
T ss_pred CHHHHH-HHHHHHhHHHHHHH
Confidence 667776 58999999887433
No 189
>COG4512 AgrB Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]
Probab=23.65 E-value=2.1e+02 Score=23.46 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=13.3
Q ss_pred hhhccccccCCCchHHHHHHHHH
Q 021688 90 APLFNKFTPLPEGELREKIEKLA 112 (309)
Q Consensus 90 ~~l~~~~~pl~~~~L~~~i~~l~ 112 (309)
+|--.+..|+...+++++.++.+
T Consensus 124 APa~teahplvg~e~~kr~Kk~a 146 (198)
T COG4512 124 APADTEAHPLVGTEHRKRLKKRA 146 (198)
T ss_pred CccccccCCCccHHHHHHHHHHH
Confidence 34445566776666666665433
No 190
>KOG3714 consensus Meprin A metalloprotease [Posttranslational modification, protein turnover, chaperones]
Probab=23.52 E-value=35 Score=32.14 Aligned_cols=13 Identities=38% Similarity=0.276 Sum_probs=11.7
Q ss_pred HHHHHHHHhhhhc
Q 021688 164 VAVIAHELGHWKL 176 (309)
Q Consensus 164 ~aVlaHElgH~~~ 176 (309)
.++++||++|...
T Consensus 160 ~G~i~HEl~HaLG 172 (411)
T KOG3714|consen 160 FGTIVHELMHALG 172 (411)
T ss_pred CchhHHHHHHHhh
Confidence 8999999999875
No 191
>PF02074 Peptidase_M32: Carboxypeptidase Taq (M32) metallopeptidase; InterPro: IPR001333 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M32 (carboxypeptidase Taq family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. Carboxypeptidase Taq is a zinc-containing thermostable metallopeptidase. It was originally discovered and purified from Thermus aquaticus; optimal enzymatic activity occurs at 80 celcius. Although very little is known about this enzyme, it is thought either to be associated with a membrane or to be particle bound.; GO: 0004181 metallocarboxypeptidase activity, 0006508 proteolysis; PDB: 1K9X_A 1KA4_A 1KA2_A 3DWC_A 1WGZ_A 3HQ2_A 3HOA_B.
Probab=23.24 E-value=1.6e+02 Score=28.58 Aligned_cols=61 Identities=18% Similarity=0.181 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCCCCCceEEEeCCCCCCCccEEEeccCCCceeeecHhHHhhcCChhHHHHHHHHHHhhhh
Q 021688 106 EKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWK 175 (309)
Q Consensus 106 ~~i~~l~~~~g~~~~~i~v~~~~~~s~~~NA~~~G~~~~~~I~l~~~ll~~l~~~~El~aVlaHElgH~~ 175 (309)
+.-.++++..|++..+-.+ |.| .-.|++|++ .+.+=||+..-.. +.-.=..=..||.||-.
T Consensus 211 ~~~~~~~~~~G~d~~~grl-d~s-----~HPFt~~~~-~~DvRiTTry~e~--d~~~~l~s~iHE~GHal 271 (494)
T PF02074_consen 211 AFSRELLEYLGFDFDRGRL-DES-----AHPFTTGFG-PNDVRITTRYDED--DFLSALFSTIHETGHAL 271 (494)
T ss_dssp HHHHHHHHHHT--GCGEEE-EE------SS-EEEEEE-TTEEEEEE--BTT--BTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccceEE-ecC-----CCCCCCCCC-CCceeeecccccc--cHHHHHHHHHHHHHHHH
Confidence 4556788899999777666 432 345666665 4466666654322 12222223459999965
No 192
>KOG3658 consensus Tumor necrosis factor-alpha-converting enzyme (TACE/ADAM17) and related metalloproteases [Extracellular structures]
Probab=23.05 E-value=24 Score=34.86 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=0.0
Q ss_pred hhcCChhHHHHHHHHHHhh
Q 021688 155 QQCKNDEEIVAVIAHELGH 173 (309)
Q Consensus 155 ~~l~~~~El~aVlaHElgH 173 (309)
+.. .+.|..-++|||+||
T Consensus 385 ~~V-p~kvs~lt~AHEiGH 402 (764)
T KOG3658|consen 385 KRV-PTKVSDLTLAHEIGH 402 (764)
T ss_pred Ccc-Ccchhheeehhhhcc
No 193
>PF03706 UPF0104: Uncharacterised protein family (UPF0104); InterPro: IPR022791 This family of proteins are integral membrane proteins. These proteins are uncharacterised but contain a conserved PG motif. Some members of this family are annotated as dolichol-P-glucose synthetase and contain a PF00535 from PFAM domain. This entry also contains proteins of unknown function that are involved in the addition of lysine to phosphatidylglycerol (lysylphosphatidylglycerol synthetase, L-PG synthase). L-PG synthase produces lysyl-phosphatidylglycerol (L-PG), the major component of the bacterial membrane and responsible for its positive charge. L-PG synthesis contributes to bacterial virulence as it is involved in the cationic antimicrobial peptides (CAMP) resistance mechanism of the host's immune system (defensins, cathelicidins) and of the competing microorganisms (bacteriocins).
Probab=23.04 E-value=4.9e+02 Score=22.43 Aligned_cols=26 Identities=8% Similarity=0.335 Sum_probs=16.1
Q ss_pred HHhhhchhhcccCCCCC-CHHHHHHHH
Q 021688 12 SLYSTFVIEARHGFNKQ-TIWLFFRDM 37 (309)
Q Consensus 12 ~~y~~~~l~~~~g~~~~-~~~~~~~~~ 37 (309)
+..+-+.+.+|.|.+.. .....+.+.
T Consensus 83 ~~~r~~~l~~~~gi~~~~~~~~~~~~~ 109 (294)
T PF03706_consen 83 EVVRAYLLKRRKGISRSDAFAAVLLER 109 (294)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 45555666778888763 344556665
No 194
>TIGR03818 MotA1 flagellar motor stator protein MotA. This model represents one family of MotA proteins which are often not identified by the "transporter, MotA/TolQ/ExbB proton channel family" model, pfam01618.
Probab=22.88 E-value=5.4e+02 Score=22.84 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=21.8
Q ss_pred ChhHHHHHHHHHHhhhhcchHHHHHHHH
Q 021688 159 NDEEIVAVIAHELGHWKLNHTMYSFIAV 186 (309)
Q Consensus 159 ~~~El~aVlaHElgH~~~~h~~~~~~~~ 186 (309)
++++++.++--|+-....+|..-.-.+.
T Consensus 139 ~~~~i~~iLe~ei~~~~~~~~~~~~v~~ 166 (282)
T TIGR03818 139 NPHELEALMEEEIETHHHELLKPAHALQ 166 (282)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999888777775544433
No 195
>PF03820 Mtc: Tricarboxylate carrier; InterPro: IPR004686 The MTC family consists of a limited number of homologues, all from eukaryotes. One member of the family has been functionally characterised as a tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism. The rest of the characterised proteins appear to be sideroflexins involved in iron transport.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016020 membrane
Probab=22.75 E-value=4.2e+02 Score=23.91 Aligned_cols=101 Identities=11% Similarity=0.118 Sum_probs=47.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ChhHHHHHHHHHHHHHHHHHHhhhHhhhhhccccccC
Q 021688 23 HGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKG---GPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPL 99 (309)
Q Consensus 23 ~g~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~i~~l~~~~~pl 99 (309)
.|.|++.-..=+.+...+=++...=...+-.++....++. .+.-++...+-..+..+.+.+..|.- --+|-....+
T Consensus 201 vG~Sk~Aa~~Av~~t~~SRi~~~~P~m~lpPlim~~l~r~~~~~~~p~~~~p~~~~l~~~~l~~~~P~a-~AlFPQ~~si 279 (308)
T PF03820_consen 201 VGKSKKAARKAVSQTALSRIVMAAPSMLLPPLIMNRLERTPFLKRNPWLNAPIQLALIGLCLGFMLPLA-CALFPQRSSI 279 (308)
T ss_pred eeEEhHHHHHHHHHHHHHHHHHhchhhhCcHHHHHHHHHhHHHHhCchhhhhHHhHHHHHHHHHhhhhH-Hhhccccccc
Confidence 5667777655566666554332211111111222222221 11122222222333334445555633 3356666666
Q ss_pred CCchHHHHHHHHHHHcCCCCCceEE
Q 021688 100 PEGELREKIEKLASSLKFPLKKLFV 124 (309)
Q Consensus 100 ~~~~L~~~i~~l~~~~g~~~~~i~v 124 (309)
+-.+|..++++..++.|-+...+|.
T Consensus 280 ~~~~LEpe~~~~~~~~g~~~~~vyy 304 (308)
T PF03820_consen 280 SVSKLEPELQELTEKKGPPPTTVYY 304 (308)
T ss_pred chHhcCHHHHHHHhhcCCCCCEEEe
Confidence 6566666777777676766666664
No 196
>KOG1565 consensus Gelatinase A and related matrix metalloproteases [Posttranslational modification, protein turnover, chaperones; Extracellular structures]
Probab=21.97 E-value=38 Score=32.47 Aligned_cols=16 Identities=38% Similarity=0.468 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHhhhhc
Q 021688 161 EEIVAVIAHELGHWKL 176 (309)
Q Consensus 161 ~El~aVlaHElgH~~~ 176 (309)
-.+..|.+||+||...
T Consensus 209 ~~l~~Va~HEiGH~LG 224 (469)
T KOG1565|consen 209 VDLFLVAAHEIGHALG 224 (469)
T ss_pred chhHHHhhhhcccccc
Confidence 3688999999999764
No 197
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=21.94 E-value=69 Score=18.49 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=15.4
Q ss_pred CchHHHHHHHHHHHcCCC
Q 021688 101 EGELREKIEKLASSLKFP 118 (309)
Q Consensus 101 ~~~L~~~i~~l~~~~g~~ 118 (309)
++++.+.++++|++.|.+
T Consensus 7 ~~~~~~~l~~~a~~~g~s 24 (39)
T PF01402_consen 7 PDELYERLDELAKELGRS 24 (39)
T ss_dssp EHHHHHHHHHHHHHHTSS
T ss_pred CHHHHHHHHHHHHHHCcC
Confidence 468899999999999875
No 198
>COG3227 LasB Zinc metalloprotease (elastase) [Amino acid transport and metabolism]
Probab=21.33 E-value=27 Score=33.10 Aligned_cols=40 Identities=25% Similarity=0.327 Sum_probs=23.6
Q ss_pred CCccEEEeccCCCceeeecHh---HHhhcCChhHHHHHHHHHHhhhhcch
Q 021688 132 SHSNAYMYGFFKNKRIVLYDT---LIQQCKNDEEIVAVIAHELGHWKLNH 178 (309)
Q Consensus 132 ~~~NA~~~G~~~~~~I~l~~~---ll~~l~~~~El~aVlaHElgH~~~~h 178 (309)
+--|||-. +..++..|| .+..+ + -=.=|+|||+.|-.-.-
T Consensus 310 ~ynNAfWd----G~qMvyGDGDG~~f~~~-S--~sLDVvAHElTHGvtq~ 352 (507)
T COG3227 310 NYNNAFWD----GDQMVYGDGDGSFFTPF-S--GSLDVVAHELTHGVTQQ 352 (507)
T ss_pred cccccccc----CceeEeecCCcceeccc-c--cccceehhhhcchhhhh
Confidence 34677754 466777776 22222 2 11238999999976433
No 199
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=21.33 E-value=2.7e+02 Score=22.15 Aligned_cols=77 Identities=17% Similarity=0.256 Sum_probs=52.1
Q ss_pred ccCCCchHHHHHHHHHHHcCCCCCceEEEeCCCCCCCccEEEeccCCCceeeecHhHHhhcCChhHHHHHHHHHHhhhhc
Q 021688 97 TPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKL 176 (309)
Q Consensus 97 ~pl~~~~L~~~i~~l~~~~g~~~~~i~v~~~~~~s~~~NA~~~G~~~~~~I~l~~~ll~~l~~~~El~aVlaHElgH~~~ 176 (309)
....+++...+-+++.+++..|...---+ .+.||-... .=+.-|.+.+-+.- |+.|+..-+---.|+...
T Consensus 27 ~~f~~~~qe~ra~~Lt~~LRCp~CQNqsI------adSnA~IA~---DlR~~V~e~l~eGk-S~~qIid~mVaRYG~FVl 96 (153)
T COG3088 27 EQFADPAQEQRARALTEELRCPQCQNQSI------ADSNAPIAR---DLRHQVYELLQEGK-SDQQIIDYMVARYGEFVL 96 (153)
T ss_pred ccCCCHHHHHHHHHHHHhcCCCcCCCCCh------hhhccHHHH---HHHHHHHHHHHcCC-cHHHHHHHHHHhhcceee
Confidence 34668899999999999988774321111 235665543 45666777666665 888887777777888777
Q ss_pred chHHHHH
Q 021688 177 NHTMYSF 183 (309)
Q Consensus 177 ~h~~~~~ 183 (309)
.+.....
T Consensus 97 y~Pp~~~ 103 (153)
T COG3088 97 YKPPLTG 103 (153)
T ss_pred ecCCCch
Confidence 7776554
No 200
>cd04282 ZnMc_meprin Zinc-dependent metalloprotease, meprin_like subfamily. Meprins are membrane-bound or secreted extracellular proteases, which cleave a variety of targets, including peptides such as parathyroid hormone, gastrin, and cholecystokinin, cytokines such as osteopontin, and proteins such as collagen IV, fibronectin, casein and gelatin. Meprins may also be able to release proteins from the cell surface. Closely related meprin alpha- and beta-subunits form homo- and hetero-oligomers; these complexes are found on epithelial cells of the intestine, for example, and are also expressed in certain cancer cells.
Probab=21.10 E-value=42 Score=28.81 Aligned_cols=13 Identities=31% Similarity=0.179 Sum_probs=10.9
Q ss_pred HHHHHHHHhhhhc
Q 021688 164 VAVIAHELGHWKL 176 (309)
Q Consensus 164 ~aVlaHElgH~~~ 176 (309)
.+++.||++|...
T Consensus 121 ~Gti~HEl~HalG 133 (230)
T cd04282 121 KATVEHEFLHALG 133 (230)
T ss_pred CchHHHHHHHHhC
Confidence 4899999999763
No 201
>PRK10911 oligopeptidase A; Provisional
Probab=20.35 E-value=60 Score=32.77 Aligned_cols=19 Identities=26% Similarity=0.527 Sum_probs=14.6
Q ss_pred ChhHHHHHHHHHHhhhhcch
Q 021688 159 NDEEIVAVIAHELGHWKLNH 178 (309)
Q Consensus 159 ~~~El~aVlaHElgH~~~~h 178 (309)
+-+|+. .+.||+||..|.-
T Consensus 460 ~~~~v~-tlfHEfGHalH~~ 478 (680)
T PRK10911 460 THDEVI-TLFHEFGHGLHHM 478 (680)
T ss_pred CHHHHH-HHHHHHhHHHHHH
Confidence 447776 6899999998754
No 202
>PF08219 TOM13: Outer membrane protein TOM13; InterPro: IPR013262 The TOM13 family of proteins are mitochondrial outer membrane proteins that mediate the assembly of beta-barrel proteins [].; GO: 0005741 mitochondrial outer membrane
Probab=20.25 E-value=58 Score=22.58 Aligned_cols=12 Identities=25% Similarity=0.177 Sum_probs=9.0
Q ss_pred HHHHHHhhhhcc
Q 021688 166 VIAHELGHWKLN 177 (309)
Q Consensus 166 VlaHElgH~~~~ 177 (309)
++|||+++-.++
T Consensus 55 l~AhE~~fr~gW 66 (77)
T PF08219_consen 55 LFAHEIAFRLGW 66 (77)
T ss_pred HHHHHHHHHhcc
Confidence 689999876554
No 203
>PF04293 SpoVR: SpoVR like protein; InterPro: IPR007390 One of the family members P37875 from SWISSPROT is Bacillus subtilis stage V sporulation protein R, which is involved in spore cortex formation []. Little is known about cortex biosynthesis, except that it depends on several sigma E controlled genes, including spoVR [].
Probab=20.11 E-value=1.1e+02 Score=28.88 Aligned_cols=28 Identities=29% Similarity=0.334 Sum_probs=21.1
Q ss_pred eeeecHh-----HHhhcCChhHHHHHHHHHHhhh
Q 021688 146 RIVLYDT-----LIQQCKNDEEIVAVIAHELGHW 174 (309)
Q Consensus 146 ~I~l~~~-----ll~~l~~~~El~aVlaHElgH~ 174 (309)
-+||+++ |++.- +.-+-..|+||=+||.
T Consensus 78 E~VINs~Pc~AyL~e~N-t~~~q~lViAHV~gH~ 110 (426)
T PF04293_consen 78 EMVINSNPCIAYLMESN-TLAMQKLVIAHVYGHN 110 (426)
T ss_pred EEEECCCchhhhHhccC-cHHHHHHHHHHHHHHH
Confidence 4677765 55555 6777888999999995
Done!