Query 021689
Match_columns 309
No_of_seqs 176 out of 1877
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 04:55:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021689.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021689hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 4E-45 8.6E-50 323.6 33.7 306 2-309 73-383 (455)
2 PRK10367 DNA-damage-inducible 100.0 1.7E-41 3.7E-46 300.3 36.2 292 2-295 66-360 (441)
3 PRK00187 multidrug efflux prot 100.0 1E-40 2.2E-45 297.9 35.2 306 2-309 66-383 (464)
4 PRK10189 MATE family multidrug 100.0 1.9E-40 4.2E-45 296.2 36.1 306 2-309 85-401 (478)
5 PRK09575 vmrA multidrug efflux 100.0 4.4E-40 9.5E-45 293.3 34.6 306 2-308 69-377 (453)
6 PRK01766 multidrug efflux prot 100.0 7.3E-39 1.6E-43 286.5 35.1 306 2-309 68-381 (456)
7 TIGR00797 matE putative efflux 100.0 2.8E-36 6.1E-41 260.4 33.9 289 2-292 49-341 (342)
8 KOG1347 Uncharacterized membra 100.0 1.9E-29 4.2E-34 222.2 30.4 307 1-308 84-390 (473)
9 TIGR01695 mviN integral membra 100.0 4.3E-28 9.3E-33 219.9 34.7 295 8-308 63-369 (502)
10 PRK15099 O-antigen translocase 100.0 5E-27 1.1E-31 207.8 33.6 285 3-303 60-348 (416)
11 TIGR02900 spore_V_B stage V sp 100.0 2.4E-27 5.1E-32 214.4 31.7 299 2-308 57-373 (488)
12 PF03023 MVIN: MviN-like prote 100.0 2.6E-24 5.5E-29 191.2 36.0 299 2-307 34-343 (451)
13 COG0728 MviN Uncharacterized m 99.9 1.6E-20 3.4E-25 165.0 34.4 302 1-306 66-376 (518)
14 PRK10459 colanic acid exporter 99.8 4.4E-18 9.5E-23 154.1 30.7 268 23-306 75-344 (492)
15 COG2244 RfbX Membrane protein 99.8 2E-16 4.4E-21 142.8 28.9 235 64-306 117-351 (480)
16 PRK09575 vmrA multidrug efflux 99.7 6.5E-16 1.4E-20 138.2 17.2 145 1-147 290-436 (453)
17 PRK10189 MATE family multidrug 99.7 1.1E-15 2.4E-20 137.2 18.0 145 162-308 26-172 (478)
18 PRK00187 multidrug efflux prot 99.7 1.3E-15 2.9E-20 136.5 17.9 146 160-308 5-150 (464)
19 PRK01766 multidrug efflux prot 99.7 5E-15 1.1E-19 132.9 18.6 147 160-308 7-153 (456)
20 PF01554 MatE: MatE; InterPro 99.7 1.6E-16 3.4E-21 122.3 7.2 135 173-309 1-135 (162)
21 COG0534 NorM Na+-driven multid 99.6 1.1E-14 2.4E-19 129.6 17.8 146 161-308 13-158 (455)
22 PRK10367 DNA-damage-inducible 99.6 1.3E-14 2.8E-19 129.1 17.6 147 161-308 5-151 (441)
23 TIGR01695 mviN integral membra 99.6 6.8E-14 1.5E-18 127.2 20.6 169 2-179 280-453 (502)
24 PF01943 Polysacc_synt: Polysa 99.6 5.3E-12 1.2E-16 105.3 26.3 216 4-233 55-272 (273)
25 TIGR02900 spore_V_B stage V sp 99.5 1.5E-12 3.3E-17 117.9 20.4 142 2-147 292-434 (488)
26 PF03023 MVIN: MviN-like prote 99.5 8.6E-12 1.9E-16 111.3 22.3 144 2-147 255-403 (451)
27 PF01554 MatE: MatE; InterPro 99.5 1.1E-14 2.4E-19 111.9 2.8 112 2-113 49-162 (162)
28 TIGR00797 matE putative efflux 99.5 1.6E-12 3.5E-17 112.3 15.5 134 173-308 1-134 (342)
29 COG0728 MviN Uncharacterized m 99.5 7.5E-11 1.6E-15 104.4 25.5 173 2-182 289-466 (518)
30 PF13440 Polysacc_synt_3: Poly 99.5 3.8E-10 8.3E-15 93.0 27.5 210 4-233 40-251 (251)
31 PRK10459 colanic acid exporter 99.2 2.5E-08 5.3E-13 90.6 26.6 136 5-146 268-404 (492)
32 PRK15099 O-antigen translocase 99.0 2E-08 4.3E-13 89.2 16.6 139 2-147 273-412 (416)
33 COG2244 RfbX Membrane protein 99.0 1.1E-07 2.3E-12 86.2 19.8 126 2-132 270-396 (480)
34 PF14667 Polysacc_synt_C: Poly 98.8 1.4E-06 3.1E-11 65.4 18.7 79 67-147 2-80 (146)
35 KOG1347 Uncharacterized membra 98.5 2.5E-06 5.5E-11 76.2 12.7 142 161-305 24-166 (473)
36 PF07260 ANKH: Progressive ank 98.3 0.00065 1.4E-08 56.2 21.7 150 46-197 110-268 (345)
37 PF04506 Rft-1: Rft protein; 97.9 0.0014 3.1E-08 59.8 17.7 142 165-307 253-406 (549)
38 KOG2864 Nuclear division RFT1 97.8 0.018 3.8E-07 50.3 22.2 284 18-307 81-386 (530)
39 PF04506 Rft-1: Rft protein; 97.6 0.0055 1.2E-07 56.1 16.5 128 19-147 339-470 (549)
40 PF07260 ANKH: Progressive ank 97.5 0.0099 2.1E-07 49.4 15.2 138 162-309 8-152 (345)
41 KOG2864 Nuclear division RFT1 97.3 0.0091 2E-07 52.0 13.0 131 15-147 315-449 (530)
42 COG4267 Predicted membrane pro 94.3 3.1 6.8E-05 35.9 23.6 198 72-279 139-359 (467)
43 PF13440 Polysacc_synt_3: Poly 93.9 2.9 6.4E-05 33.9 13.5 68 189-263 9-77 (251)
44 PF01943 Polysacc_synt: Polysa 84.6 20 0.00044 29.2 16.1 64 189-256 24-88 (273)
45 PF04505 Dispanin: Interferon- 79.7 15 0.00033 24.3 6.9 37 222-258 36-72 (82)
46 COG4267 Predicted membrane pro 74.5 60 0.0013 28.5 13.4 118 17-141 318-436 (467)
47 PF03904 DUF334: Domain of unk 69.2 33 0.00071 27.5 7.2 62 17-78 142-212 (230)
48 COG2211 MelB Na+/melibiose sym 50.1 2E+02 0.0044 26.2 15.9 26 89-114 144-169 (467)
49 PF06808 DctM: DctM-like trans 45.6 2.3E+02 0.0049 25.4 13.8 32 234-265 256-287 (416)
50 PF14184 YrvL: Regulatory prot 43.4 1.3E+02 0.0028 22.0 12.9 103 26-130 5-108 (132)
51 PF01102 Glycophorin_A: Glycop 42.4 50 0.0011 23.8 3.9 26 122-147 66-91 (122)
52 PF03609 EII-Sor: PTS system s 37.1 2.3E+02 0.005 23.1 12.6 91 209-299 103-199 (238)
53 PRK15065 PTS system mannose-sp 33.2 2.9E+02 0.0062 23.0 12.0 85 215-299 109-199 (262)
54 TIGR00822 EII-Sor PTS system, 32.9 2.9E+02 0.0063 23.0 12.0 84 215-298 109-197 (265)
55 TIGR00427 membrane protein, Ma 32.1 2.6E+02 0.0056 22.2 7.3 59 228-290 25-83 (201)
56 PF05975 EcsB: Bacterial ABC t 30.6 3.8E+02 0.0083 23.7 16.9 36 17-52 89-125 (386)
57 PRK09757 PTS system N-acetylga 30.4 3.3E+02 0.007 22.8 11.6 83 216-298 111-198 (267)
58 PRK10739 putative antibiotic t 30.3 2.8E+02 0.006 22.0 8.6 55 6-63 21-75 (197)
59 PRK11111 hypothetical protein; 29.0 3E+02 0.0066 22.0 7.3 59 228-290 28-86 (214)
60 TIGR00765 yihY_not_rbn YihY fa 28.6 3.3E+02 0.0072 22.4 15.6 11 8-18 106-116 (259)
61 PF05313 Pox_P21: Poxvirus P21 27.8 2.9E+02 0.0063 21.4 6.6 27 121-147 135-161 (189)
62 PF01914 MarC: MarC family int 26.0 3.4E+02 0.0073 21.5 8.6 54 7-63 22-75 (203)
63 PF07719 TPR_2: Tetratricopept 24.1 1.1E+02 0.0024 15.2 2.6 20 233-252 11-30 (34)
64 PRK10739 putative antibiotic t 22.5 3.9E+02 0.0085 21.1 9.6 59 228-290 22-80 (197)
65 PF03030 H_PPase: Inorganic H+ 21.6 7.5E+02 0.016 24.0 9.9 110 128-249 527-636 (682)
66 KOG2639 Sodium sulfate symport 20.8 7.1E+02 0.015 23.4 11.8 17 164-180 653-669 (685)
67 TIGR00427 membrane protein, Ma 20.6 4.4E+02 0.0094 20.9 8.6 54 6-62 24-77 (201)
68 COG4920 Predicted membrane pro 20.6 4E+02 0.0087 21.2 5.7 56 234-289 81-141 (249)
69 PRK10995 inner membrane protei 20.5 4.6E+02 0.0099 21.1 8.6 54 6-62 25-78 (221)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=4e-45 Score=323.62 Aligned_cols=306 Identities=24% Similarity=0.323 Sum_probs=288.9
Q ss_pred cchhhhHhhhhhCCCchhhHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhcCCChHHHHHHHHHHHHHHhHHHHHHHH
Q 021689 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSP-LYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALN 80 (309)
Q Consensus 2 ~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 80 (309)
+.|.++.+||++|+||++++++..+++++++++++++..+ .+.+.+|++.+++.++|+.+.+.+|+++..++.|+..+.
T Consensus 73 ~~g~~~liaq~~Ga~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~ 152 (455)
T COG0534 73 GTGTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLS 152 (455)
T ss_pred HHhHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999977766 899999999999998899999999999999999999999
Q ss_pred HHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHh-hc-CchhhHHHHHHHHHHHHHHHHHHHHHhccc--CccCCCC
Q 021689 81 FPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILK-LG-WGLIGAAITLNLSWWLIVILQLLYIFITKS--DGAWSGF 156 (309)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lli~~-~~-~g~~g~~la~~i~~~~~~~~~~~~~~~~~~--~~~~~~~ 156 (309)
..+++.+|+.||+|.+++.+++++++|+++|++|+++ ++ +|+.|+++||++++++..++..++.++++. +....+.
T Consensus 153 ~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (455)
T COG0534 153 FVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKL 232 (455)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhc
Confidence 9999999999999999999999999999999999998 46 999999999999999999999999998753 3333344
Q ss_pred CHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 021689 157 SWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGA 236 (309)
Q Consensus 157 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~g~ 236 (309)
.+.+++.+|++++.++|.++++..+...+...+.+.+++| ++++|+|+++.++.++..+++.|++++.++++++++|+
T Consensus 233 ~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga 310 (455)
T COG0534 233 LKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGA 310 (455)
T ss_pred cCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4566789999999999999999999999999999999999 78899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCC
Q 021689 237 GNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGNY 309 (309)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L 309 (309)
||+|++|+..+.+.+++..+++..++.++.+++++.++|++|+|+.+.+..++++..+..++++.+.+.+|.+
T Consensus 311 ~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~l 383 (455)
T COG0534 311 GNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVL 383 (455)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988753
No 2
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=1.7e-41 Score=300.31 Aligned_cols=292 Identities=14% Similarity=0.121 Sum_probs=265.9
Q ss_pred cchhhhHhhhhhCCCchhhHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhcCCChHHHHHHHHHHHHHHhHHHHHHHH
Q 021689 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSP-LYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALN 80 (309)
Q Consensus 2 ~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 80 (309)
+.|.++.+||++|+||+|++++..++++.++++.+++... ...+.++++.+++.|+|+.+.+.+|+++..++.|+..+.
T Consensus 66 ~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~ 145 (441)
T PRK10367 66 RMSTTGLTAQAFGAKNPQALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLAN 145 (441)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999999999988876 677889999999999999999999999999999999999
Q ss_pred HHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHhc-ccCc-cCCCCCH
Q 021689 81 FPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFIT-KSDG-AWSGFSW 158 (309)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lli~~~~~g~~g~~la~~i~~~~~~~~~~~~~~~~-~~~~-~~~~~~~ 158 (309)
.++++++|+.||++.+++.++++.++|+++|+++++++++|+.|+++++.+++++..++..++++++ +.+. +.+.++.
T Consensus 146 ~~~~~~lr~~G~~~~~~~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 225 (441)
T PRK10367 146 LVLLGWLLGVQYARAPVILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKT 225 (441)
T ss_pred HHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhh
Confidence 9999999999999999999999999999999999998899999999999999999998887777654 2121 1111121
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 021689 159 LAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGN 238 (309)
Q Consensus 159 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~g~~~ 238 (309)
+.++.+|+++|.+.|.++.+..+...+.+.+.+++++| ++++++|+++.++.++..+++.|++++.+|++++++|+||
T Consensus 226 ~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~ 303 (441)
T PRK10367 226 AWRGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARD 303 (441)
T ss_pred hhHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC
Confidence 11246899999999999999999999999999999999 6789999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcHHHHHHHHHHHHHHHHH
Q 021689 239 ARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAIT 295 (309)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~ 295 (309)
+|++|+..+++.+++.+++...+++++.+++++.++|++|+|+.+.+..++++..+.
T Consensus 304 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~ 360 (441)
T PRK10367 304 GSQLLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVIL 360 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998754
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=1e-40 Score=297.87 Aligned_cols=306 Identities=21% Similarity=0.187 Sum_probs=276.1
Q ss_pred cchhhhHhhhhhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhcCCChHHHHHHHHHHHHHHhHHHHHHHHH
Q 021689 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALNF 81 (309)
Q Consensus 2 ~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 81 (309)
+.|.++.+||++|++|+|++++..++++.+..+.+++..++..+.+|++++++.|+|+.+.+.+|+++..++.|+..+..
T Consensus 66 ~~~~~~i~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~ 145 (464)
T PRK00187 66 IAAVGTLVAIRHGAGDIEGATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFM 145 (464)
T ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999998887665556799999999999999999999999999999999999
Q ss_pred HHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhh----cCchhhHHHHHHHHHHHHHHHHHHHHHhcccC--cc-CC
Q 021689 82 PIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKL----GWGLIGAAITLNLSWWLIVILQLLYIFITKSD--GA-WS 154 (309)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lli~~~----~~g~~g~~la~~i~~~~~~~~~~~~~~~~~~~--~~-~~ 154 (309)
.+++++|+.||++.+++.++.+.++|+++|+++++++ ++|+.|+++++.+++....+...+++++++.+ .+ ++
T Consensus 146 ~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (464)
T PRK00187 146 ALRGFTSALGRAGPVMVISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRK 225 (464)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhc
Confidence 9999999999999999999999999999999999864 58999999999999988887776666654211 11 11
Q ss_pred CCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021689 155 GFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNEL 234 (309)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~ 234 (309)
++.+.+++.+|++++.++|.++++..+...+.++..+++++| ++++++++++.++..+...++.+++++.+++++|++
T Consensus 226 ~~~~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~ 303 (464)
T PRK00187 226 GLSRPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHY 303 (464)
T ss_pred cccCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222345678999999999999999999999999999999999 678999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccC--cH---HHHHHHHHHHHHHHHHHHhhhhhhhhhcCC
Q 021689 235 GAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTN--SE---AVAAETTKLSILLAITVLMNCLQPVLSGNY 309 (309)
Q Consensus 235 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L 309 (309)
|+||+|++|+..+.++.++++++++.+++++.+++++.++|++ |+ |+.+.+..++++.+++.++++++.+..++|
T Consensus 304 Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~l 383 (464)
T PRK00187 304 GAGRLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAI 383 (464)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhH
Confidence 9999999999999999999999999999999999999999964 44 789999999999999999999999988764
No 4
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=1.9e-40 Score=296.24 Aligned_cols=306 Identities=16% Similarity=0.159 Sum_probs=277.1
Q ss_pred cchhhhHhhhhhCCCchhhHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhcC--CChHHHHHHHHHHHHHHhHHHHHH
Q 021689 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSP-LYVWSPPVLMLFG--ETAEISNAAGKFALWMLPQLFAYA 78 (309)
Q Consensus 2 ~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~i~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~ 78 (309)
++|.++.+||++|+||+|++++..++++.++...+++.++ .+.+.++++++++ .|+|+.+.+.+|+++..++.|+..
T Consensus 85 ~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~ 164 (478)
T PRK10189 85 DLGTTVVVAFSLGKRDRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAA 164 (478)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999988876 6788899999994 699999999999999999999999
Q ss_pred HHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhh----cCchhhHHHHHHHHHHHHHHHHHHHHHhc-cc--Cc
Q 021689 79 LNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKL----GWGLIGAAITLNLSWWLIVILQLLYIFIT-KS--DG 151 (309)
Q Consensus 79 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lli~~~----~~g~~g~~la~~i~~~~~~~~~~~~~~~~-~~--~~ 151 (309)
+...+++++|+.||++.++..++...++|++++++++++. ++|+.|+++++.+++++..++..+++.++ +. +.
T Consensus 165 ~~~~~~~~lr~~G~~~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~ 244 (478)
T PRK10189 165 ITLIGSGALRGAGNTKIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRI 244 (478)
T ss_pred HHHHHHHHHHhcCchHHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCcccee
Confidence 9999999999999999999999999999999999999864 78999999999999999988877666543 21 11
Q ss_pred cCCC-CCHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021689 152 AWSG-FSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRV 230 (309)
Q Consensus 152 ~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~a~~~~~ 230 (309)
++++ +.+.+++.+|++++.|+|.++..........+.+.+++.+| +.++|+++++.++.++..++..|++++.+|++
T Consensus 245 ~~~~~~~~~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lv 322 (478)
T PRK10189 245 SLKSYFKPLNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTIIT 322 (478)
T ss_pred eeccccccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 12235688999999999999988888888777778888998 67899999999999999999999999999999
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCC
Q 021689 231 SNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGNY 309 (309)
Q Consensus 231 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L 309 (309)
++++|+||++++|+..+.+.+++++++...+++++.+++++.++|++|+|+.+.+...+++.++..++++.+++.+|.|
T Consensus 323 g~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~l 401 (478)
T PRK10189 323 GTRLGKGQIAQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGL 401 (478)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987754
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=4.4e-40 Score=293.28 Aligned_cols=306 Identities=17% Similarity=0.182 Sum_probs=278.0
Q ss_pred cchhhhHhhhhhCCCchhhHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhcCCChHHHHHHHHHHHHHHhHHHHHHHH
Q 021689 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSP-LYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALN 80 (309)
Q Consensus 2 ~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 80 (309)
+.|.++.++|++|+||+|+.++..++++.++.+.+++.++ ...+.+|++++++.|+++.+.+.+|+++..++.|+..+.
T Consensus 69 ~~g~~~lvsq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~ 148 (453)
T PRK09575 69 GMGTGSLLSIKRGEGDLEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGA 148 (453)
T ss_pred hccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999988877 788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHhcccCccCC-CCCHH
Q 021689 81 FPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKSDGAWS-GFSWL 159 (309)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lli~~~~~g~~g~~la~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 159 (309)
....+++|+.||++.+++.++.+.++|+++|+++++++++|+.|+++++.+++++..++..++.++++.+.+++ +..+.
T Consensus 149 ~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (453)
T PRK09575 149 IALPFLLRNDESPNLATGLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRF 228 (453)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCc
Confidence 99999999999999999999999999999999999988999999999999999999998877776553222221 12233
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 021689 160 AFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNA 239 (309)
Q Consensus 160 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~g~~~~ 239 (309)
+++.+|++++.|+|..+++..+.....+.+.+.+++|+ +.++++++++.++..+...+..+++++.+|.+++++|+||+
T Consensus 229 ~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~ 307 (453)
T PRK09575 229 NWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQY 307 (453)
T ss_pred CHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCh
Confidence 55778999999999999999888888888888888883 35789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccC-cHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Q 021689 240 RAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTN-SEAVAAETTKLSILLAITVLMNCLQPVLSGN 308 (309)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 308 (309)
|++|+..+.++++++..+++.++++..+++++.++|++ |||+.+.+.+++++..++.++++++.+..+.
T Consensus 308 ~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~ 377 (453)
T PRK09575 308 DNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAY 377 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999995 7899999999999999999999998877653
No 6
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=7.3e-39 Score=286.46 Aligned_cols=306 Identities=20% Similarity=0.324 Sum_probs=279.1
Q ss_pred cchhhhHhhhhhCCCchhhHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhcCCChHHHHHHHHHHHHHHhHHHHHHHH
Q 021689 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSP-LYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALN 80 (309)
Q Consensus 2 ~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 80 (309)
+.|.++.+||++|++|+|+.++..++++.++++.+++.+. .+.+.+++..+++.|+++.+.+.+|+++.+++.|+..+.
T Consensus 68 ~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~ 147 (456)
T PRK01766 68 LLALTPIVAQLNGAGRRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLY 147 (456)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999988876 677889999999999999999999999999999999999
Q ss_pred HHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHh----hcCchhhHHHHHHHHHHHHHHHHHHHHHhccc-C--ccC
Q 021689 81 FPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILK----LGWGLIGAAITLNLSWWLIVILQLLYIFITKS-D--GAW 153 (309)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lli~~----~~~g~~g~~la~~i~~~~~~~~~~~~~~~~~~-~--~~~ 153 (309)
..+++++|+.||++.+++.++++.++|++++++++++ .++|+.|+++++.+++++..++..++.++++. + +.+
T Consensus 148 ~~~~~~l~~~g~~~~~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~ 227 (456)
T PRK01766 148 QVLRSFIDGLGKTKPTMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLF 227 (456)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhh
Confidence 9999999999999999999999999999999999864 25899999999999999999998887765521 1 112
Q ss_pred CCCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021689 154 SGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNE 233 (309)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~ 233 (309)
+++.+.+++..|++++.++|.+.+...+...+.++..+.+++| ++++++++++.++.++...++.+++.+.++.++|+
T Consensus 228 ~~~~~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~ 305 (456)
T PRK01766 228 KGLYKPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFE 305 (456)
T ss_pred ccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223345577999999999999999999998999999999998 67899999999999999999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCC
Q 021689 234 LGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGNY 309 (309)
Q Consensus 234 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L 309 (309)
+|+||++++|+..+.++++++.++++.+++++.+++++.++|++|||+.+.+..++++..+..++++++.+.+|+|
T Consensus 306 ~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l 381 (456)
T PRK01766 306 LGAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGAL 381 (456)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988865
No 7
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=2.8e-36 Score=260.40 Aligned_cols=289 Identities=30% Similarity=0.460 Sum_probs=262.8
Q ss_pred cchhhhHhhhhhCCCchhhHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhcCCChHHHHHHHHHHHHHHhHHHHHHHH
Q 021689 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSP-LYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALN 80 (309)
Q Consensus 2 ~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 80 (309)
++|..+.++|+.|+||+|+.++..++++.+..+.+++.++ ...+.+++.++++.|++..+.+.++++++.++.++.++.
T Consensus 49 ~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~ 128 (342)
T TIGR00797 49 GTATTALVAQAVGAGNYQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLN 128 (342)
T ss_pred HHhHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999999999999998877 778889999998888888999999999999999999999
Q ss_pred HHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHH-hhc-CchhhHHHHHHHHHHHHHHHHHHHHHhc-ccCccCCCCC
Q 021689 81 FPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLIL-KLG-WGLIGAAITLNLSWWLIVILQLLYIFIT-KSDGAWSGFS 157 (309)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lli~-~~~-~g~~g~~la~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~ 157 (309)
.++.+.+|+.||++.++..++.+.++++++++++++ .++ +|+.|+++++.+++++..++..++.+++ +.+.++++..
T Consensus 129 ~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (342)
T TIGR00797 129 FVLRGFLRGQGDTKTPMYITLIGNVINIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLL 208 (342)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccc
Confidence 999999999999999999999999999999999887 567 8899999999999999999888777653 3333322223
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 021689 158 WLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAG 237 (309)
Q Consensus 158 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~g~~ 237 (309)
+.+++.+|+++++++|..+.+...++...+++.+.+.+| +.++++|+++.++.++...++.+++++..|.+++++|+|
T Consensus 209 ~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 286 (342)
T TIGR00797 209 KPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAG 286 (342)
T ss_pred CCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 345578999999999999999999999999999998888 667899999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcHHHHHHHHHHHHHH
Q 021689 238 NARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILL 292 (309)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~ 292 (309)
|.+++|+..++++++.+.++.+.++++.++++++.++|++|||+.+.+..++++.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 287 DPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999988874
No 8
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.98 E-value=1.9e-29 Score=222.19 Aligned_cols=307 Identities=46% Similarity=0.753 Sum_probs=293.3
Q ss_pred CcchhhhHhhhhhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhcCCChHHHHHHHHHHHHHHhHHHHHHHH
Q 021689 1 MGSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALN 80 (309)
Q Consensus 1 l~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 80 (309)
+..+..+.++|++|+++++....+.+++.......+++.+..+.+.+|++..+++|+++.+.+..|.++..+..+.+...
T Consensus 84 l~~aletlcgQa~ga~~~~~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~ 163 (473)
T KOG1347|consen 84 LQLALDTLCGQAFGAKKFTALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVS 163 (473)
T ss_pred cchhhhcchHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHhcccCccCCCCCHHH
Q 021689 81 FPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKSDGAWSGFSWLA 160 (309)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lli~~~~~g~~g~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (309)
.....++|++++..+..+......++|+.+++++++..++|..|++++..++++........+....+....|..+..+
T Consensus 164 ~~l~~~lq~Q~~~~~~~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~- 242 (473)
T KOG1347|consen 164 FPLAKFLQAQSITLPLLVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGE- 242 (473)
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHh-
Confidence 9999999999999999999999999999999999999999999999999999999999998888766645566767666
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChH
Q 021689 161 FADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNAR 240 (309)
Q Consensus 161 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~g~~~~~ 240 (309)
++.++++++.++|.+++.+.|++.+.+.....+.+++++.++++.++..++....++++.+++.+.+.++++.+|+|+++
T Consensus 243 ~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~ 322 (473)
T KOG1347|consen 243 FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPK 322 (473)
T ss_pred hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChh
Confidence 89999999999999999999999999999999999988889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Q 021689 241 AAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGN 308 (309)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 308 (309)
++|...+.+...++..+...+..++..++.+.++|++|+|+.+...+..++++...+.++.+.+..|.
T Consensus 323 ~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gv 390 (473)
T KOG1347|consen 323 RARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGV 390 (473)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhhe
Confidence 99999999999999999999999999999999999999999999999999999999999999998875
No 9
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.97 E-value=4.3e-28 Score=219.92 Aligned_cols=295 Identities=16% Similarity=0.119 Sum_probs=243.1
Q ss_pred HhhhhhCCCch-hhHHHHHHHHHHHHHHHH-HHHHH-HHHhhHHHHhhc--CCChHHHHHHHHHHHHHHhHHHHHHHHHH
Q 021689 8 LCGQAFGAGSI-RMLGVYMQRSWVILLITS-CVLSP-LYVWSPPVLMLF--GETAEISNAAGKFALWMLPQLFAYALNFP 82 (309)
Q Consensus 8 ~~s~~~g~~~~-~~~~~~~~~~~~~~~~~~-i~~~~-~~~~~~~i~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~l~~~ 82 (309)
.+++..+++|+ |++++...+++......+ ++.+. .+.+.+++.+++ +.+++..+.+.+|++++.++.++..+...
T Consensus 63 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~ 142 (502)
T TIGR01695 63 FVPVFTKAKKKEKEARRAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAV 142 (502)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444 577777777766555444 44444 677788888877 45677778999999999999999999999
Q ss_pred HHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHH--HHHHHHHHHHHHHHHHHHHhcccCccCCCCCHHH
Q 021689 83 IQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAA--ITLNLSWWLIVILQLLYIFITKSDGAWSGFSWLA 160 (309)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lli~~~~~g~~g~~--la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (309)
.++++|+.||++.+++.++..+++++....++. .++|..|++ +++.+++.+..++.+++.+|++.+.+ .++ +.+
T Consensus 143 ~~~~l~~~~~~~~~~~~~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~-~~~ 218 (502)
T TIGR01695 143 FGGILNARKRFFIPSFSPILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLK-PRF-NFR 218 (502)
T ss_pred HHHHHhccCeeHHHHHHHHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccc-CcC-CCC
Confidence 999999999999999999999988777544443 378999988 99999999998888777665432211 111 123
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCCh
Q 021689 161 FADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAM-IAIGFNAAISVRVSNELGAGNA 239 (309)
Q Consensus 161 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~a~~~~~~~~~g~~~~ 239 (309)
++.+|++++.+.|..+.+..+.....++..+.+.++ +.++++|+.+.++.++... +..+++++..|.+++++|+||+
T Consensus 219 ~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~--~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~ 296 (502)
T TIGR01695 219 DPGLKRFLKLFLPTTLGSSASQITLLINTALASFLE--IGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNW 296 (502)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 467899999999999999999999999988877777 5578899999999998865 6789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccC----cHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Q 021689 240 RAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTN----SEAVAAETTKLSILLAITVLMNCLQPVLSGN 308 (309)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 308 (309)
+++|+..+++.++...++.|.++++..+++++.+++.+ |+|..+.+.++++++++..++.+++.+..+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 369 (502)
T TIGR01695 297 NELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRA 369 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999876 5677888999999999999999998887654
No 10
>PRK15099 O-antigen translocase; Provisional
Probab=99.97 E-value=5e-27 Score=207.80 Aligned_cols=285 Identities=11% Similarity=-0.005 Sum_probs=231.9
Q ss_pred chhhhHhhhhhCCCchhhHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhcCCChHHHHHHHHHHHHHHhHHHHHHHHH
Q 021689 3 SALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSP-LYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALNF 81 (309)
Q Consensus 3 ~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 81 (309)
+|.++.++|+ ++|+|+.++..++++.+.++.+++.+. +..+.+|+...++++++. ..++.+..+..++..+..
T Consensus 60 ~a~~~~ia~~--~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 133 (416)
T PRK15099 60 NGVTKYVAQY--HDQPQQLRAVVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWAN 133 (416)
T ss_pred ceeeeeHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHH
Confidence 4456777877 678889999999999999999988877 678889998888766642 345777777777788889
Q ss_pred HHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHhccc-CccCCCCCHHH
Q 021689 82 PIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKS-DGAWSGFSWLA 160 (309)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lli~~~~~g~~g~~la~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 160 (309)
.+.+.+|+.||++.++..++.+.++|+.+ +++... ..|+.|+++++.+++.+..+...++.+|++. +.++.++ +.+
T Consensus 134 ~~~~~lr~~~~~~~~~~~~~~~~~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~ 210 (416)
T PRK15099 134 LLLAILKGFRDAAGNALSLIVGSLIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKP-SWD 210 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhc-cCC
Confidence 99999999999999999999999999887 444442 3499999999999999998877776665422 1111111 224
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCchhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCC
Q 021689 161 FADLWAFVKLSLASAVMLCLEFWYLMLLVVITG-RLPNALIAVDAISVCMNIQGW-DAMIAIGFNAAISVRVSNELGAGN 238 (309)
Q Consensus 161 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~a~~~~~~~~~g~~~ 238 (309)
++..|+++++|.|..+++...++....++.+++ .+| ++++|.|+++.++.+. ...+..+++++..|.++++ +|
T Consensus 211 ~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~ 285 (416)
T PRK15099 211 NGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TE 285 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC
Confidence 577899999999999999999999999988885 777 6789999999999885 4899999999999999995 67
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021689 239 ARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQP 303 (309)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 303 (309)
+|+.++..++..+....++.+.++++.++++++.+++.+|+ .+.+.+.++++++..++...+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~ 348 (416)
T PRK15099 286 KRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAY 348 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999998765 3346677777776666655443
No 11
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.97 E-value=2.4e-27 Score=214.36 Aligned_cols=299 Identities=14% Similarity=0.153 Sum_probs=242.7
Q ss_pred cchhhhHhhhhhCCCchhhHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhcCCChHHHHHHHHHHHHHHhHHHHHHHH
Q 021689 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSP-LYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALN 80 (309)
Q Consensus 2 ~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 80 (309)
..+..+.++|+.|++|+|+.++.+++++++.++.+++.++ ...+.+++.+.+.++++. ..++++..+..++..+.
T Consensus 57 ~~a~~~~is~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~ 132 (488)
T TIGR02900 57 PVAISKFVAEASAKNDRKNIKKILKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALS 132 (488)
T ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHH
Confidence 4577888999999999999999999999999999988876 566777777766666543 34688899999999999
Q ss_pred HHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHh-----hcCchhhHHHHHHHHHHHHHHHHHHHHHhc-ccCcc--
Q 021689 81 FPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILK-----LGWGLIGAAITLNLSWWLIVILQLLYIFIT-KSDGA-- 152 (309)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lli~~-----~~~g~~g~~la~~i~~~~~~~~~~~~~~~~-~~~~~-- 152 (309)
...++++|+++|++..+..++++.++++.++..++.. .+.|+.|+++++.+++.+..++..++.+++ +.+.+
T Consensus 133 ~~~~~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 212 (488)
T TIGR02900 133 SVLKGYFQGISNMKPPAYIQVIEQIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFP 212 (488)
T ss_pred HHHHHHHhhhccchHhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 9999999999999999999999999998877665542 246788899999999999999877666554 21211
Q ss_pred CCCCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----c-hh---hHHHHH-HHHHHHHHHHHHHHHHHH
Q 021689 153 WSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLP----N-AL---IAVDAI-SVCMNIQGWDAMIAIGFN 223 (309)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~----~-~~---~~~~~~-~~~~~i~~~~~~~~~~~~ 223 (309)
+.+.++.+++.+|+++++++|..+.+........+|..++++.. . .. ...+.| +++.++..+...+..+++
T Consensus 213 ~~~~~~~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~ 292 (488)
T TIGR02900 213 FFDYKSEGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLS 292 (488)
T ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHH
Confidence 12223345578999999999999999999999999988876532 1 11 123333 356677888888899999
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021689 224 AAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQP 303 (309)
Q Consensus 224 ~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 303 (309)
++..|.+++++|+||++++|+..+++.+++..++.|.++++..+++++..++.++++ +.++++++++..++++++.
T Consensus 293 ~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~ 368 (488)
T TIGR02900 293 TALVPDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSA 368 (488)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999876554 5678899999999988887
Q ss_pred hhhcC
Q 021689 304 VLSGN 308 (309)
Q Consensus 304 ~~~~~ 308 (309)
+.+++
T Consensus 369 ~~~~~ 373 (488)
T TIGR02900 369 PLQSI 373 (488)
T ss_pred HHHHH
Confidence 76653
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.95 E-value=2.6e-24 Score=191.15 Aligned_cols=299 Identities=17% Similarity=0.182 Sum_probs=257.5
Q ss_pred cchhhhHhhhhhCCCchhhHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhc--CCChHHHHHHHHHHHHHHhHHHHHH
Q 021689 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSP-LYVWSPPVLMLF--GETAEISNAAGKFALWMLPQLFAYA 78 (309)
Q Consensus 2 ~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~i~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~ 78 (309)
+++..|..++.. ++|+|+.++..++........++.+++ .+++++++.+.+ +.|++..+.+.+.++++.+..++..
T Consensus 34 ~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~ 112 (451)
T PF03023_consen 34 SAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVRLLAPGFSPETIELAVQLLRILAPSILFIG 112 (451)
T ss_pred HHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 356678889888 888899999999988888877777776 688889999888 4578889999999999999999999
Q ss_pred HHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhhcCc---hhhHHHHHHHHHHHHHHHHHHHHHhcccCccCCC
Q 021689 79 LNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWG---LIGAAITLNLSWWLIVILQLLYIFITKSDGAWSG 155 (309)
Q Consensus 79 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lli~~~~~g---~~g~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~ 155 (309)
+..++.+++|+++|...+....+..++..+....++.. ..| +.+.++|..++.+++.++.+...+|.+.+.+.+
T Consensus 113 l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~--~~~~~~i~~la~g~~~g~~~~~l~~l~~~~~~~~~~~~~- 189 (451)
T PF03023_consen 113 LSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSN--SWGQENIYALAWGVLIGAIIQFLIQLPYLRRFGFRFRPK- 189 (451)
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHH--hcCchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccccc-
Confidence 99999999999999999999999999876664443333 566 889999999999999999888888764332211
Q ss_pred CCHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Q 021689 156 FSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDA-MIAIGFNAAISVRVSNEL 234 (309)
Q Consensus 156 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~a~~~~~~~~~ 234 (309)
++.+ .+..|++++...|..+.....+....+++.+.+.+++| ++++.+.+.++.+++. .+..+++++..|.+++..
T Consensus 190 ~~~~-~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G--~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~ 266 (451)
T PF03023_consen 190 FDWR-DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEG--SVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLA 266 (451)
T ss_pred CCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 15688999999999999999999999999999999844 6789999999999987 678899999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc----CcHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 021689 235 GAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFT----NSEAVAAETTKLSILLAITVLMNCLQPVLSG 307 (309)
Q Consensus 235 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 307 (309)
.+||.++.++..++.++....+.+|.++.+..+++++.+++. -|+|..+...+.+.+++++.++.+++.++..
T Consensus 267 ~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r 343 (451)
T PF03023_consen 267 AEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSR 343 (451)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999975 3677788999999999999999999887653
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.91 E-value=1.6e-20 Score=164.99 Aligned_cols=302 Identities=12% Similarity=0.067 Sum_probs=248.0
Q ss_pred CcchhhhHhhhhhCCCchhhHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhc-CC--ChHHHHHHHHHHHHHHhHHHH
Q 021689 1 MGSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSP-LYVWSPPVLMLF-GE--TAEISNAAGKFALWMLPQLFA 76 (309)
Q Consensus 1 l~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~i~~~~-~~--~~~~~~~~~~~l~~~~~~~~~ 76 (309)
++++..|...++..++++|+.++..+..........+..++ ..++.+++.+.. +. |++....+....+++.|..++
T Consensus 66 fs~aFVPv~~~~~~~~~~~~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~ 145 (518)
T COG0728 66 FSSAFVPVLAEAKKKEGEEAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLF 145 (518)
T ss_pred HhhhhhHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 35788899999988887777777777776566666666666 556666666454 32 233333688888999999999
Q ss_pred HHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHhcccCccCCCC
Q 021689 77 YALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKSDGAWSGF 156 (309)
Q Consensus 77 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lli~~~~~g~~g~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (309)
.++.....+.+|..+|...+.+..+..++.-+.....+......-..+.+++..++.+++.++.+...+|.+...+++ +
T Consensus 146 isL~al~~aiLNs~~~F~~~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~-~ 224 (518)
T COG0728 146 ISLSALFGAILNSRNRFFIPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPR-F 224 (518)
T ss_pred HHHHHHHHHHHhccCeechhhhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCC-C
Confidence 999999999999999999999999999998775555555442223678899999999999999999998874322222 2
Q ss_pred CHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhc
Q 021689 157 SWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDA-MIAIGFNAAISVRVSNELG 235 (309)
Q Consensus 157 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~a~~~~~~~~~g 235 (309)
..++ +.+|++.+...|..+.....++...+++.+.+.+.+| +++.++.++++.+++. .+..+++++..|.++++..
T Consensus 225 ~~~~-~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~G--sis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~ 301 (518)
T COG0728 225 GFKD-PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEG--SVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAA 301 (518)
T ss_pred CCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 1111 5789999999999999999999999999999999844 5779999999999998 8999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccC----cHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 021689 236 AGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTN----SEAVAAETTKLSILLAITVLMNCLQPVLS 306 (309)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 306 (309)
++|.++.++..++++++++..++|.++++..+++++.+++.+ +++....+.+.+..++++.++..+..++.
T Consensus 302 ~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~ 376 (518)
T COG0728 302 NGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLS 376 (518)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999742 46667889999999999999998877654
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.85 E-value=4.4e-18 Score=154.09 Aligned_cols=268 Identities=10% Similarity=0.072 Sum_probs=207.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchhHHHHHHH
Q 021689 23 VYMQRSWVILLITSCVLSP-LYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISA 101 (309)
Q Consensus 23 ~~~~~~~~~~~~~~i~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 101 (309)
+..++.++.....++.++. .+...+++...+ ++|+. ...+++..+..++..+.....+.+++.+|.+.....+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFY-HNPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CChhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 4456666777777776665 444455555444 44443 34578888888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHhcccCccCCCCCHHHHHhhHHHHHHHHHHHHHHHHH
Q 021689 102 IVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKSDGAWSGFSWLAFADLWAFVKLSLASAVMLCLE 181 (309)
Q Consensus 102 ~~~~~~~~~~~lli~~~~~g~~g~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 181 (309)
...+........+.. .+.|+.+..++..++..+..+...+..++ +.++++ +.+++..|++++++.|....+...
T Consensus 150 ~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~~----~~~~~~~k~ll~~~~~~~~~~~~~ 223 (492)
T PRK10459 150 SAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRK-IYRPAL----HFSLASVKPNLSFGAWQTAERIIN 223 (492)
T ss_pred HHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhcc-cCCccc----eecHHHHHHHHhhhHHHHHHHHHH
Confidence 888887776655554 37899999999999988877655433322 222111 123466899999999999999999
Q ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 021689 182 FWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDA-MIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCC 260 (309)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (309)
.....+|+.+++...+ +.++|.|+.+.++.+.+. .+...++++..|..++. ++|.++.++..+++.++...+++|.
T Consensus 224 ~~~~~~d~~~lg~~lg-~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~ 300 (492)
T PRK10459 224 YLNTNIDTILIGRILG-AEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPL 300 (492)
T ss_pred HHHhcCchhhhhHhhc-hHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887652 667999999999998865 45556788999999885 6788999999999999999999999
Q ss_pred HHHHHHhhccccccccCcHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 021689 261 TILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLS 306 (309)
Q Consensus 261 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 306 (309)
++++..+++++..++.+|+ .+.+.+.++++++..++..+.....
T Consensus 301 ~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~ 344 (492)
T PRK10459 301 LLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIG 344 (492)
T ss_pred HHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998887654 5668899999998888777665543
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.79 E-value=2e-16 Score=142.84 Aligned_cols=235 Identities=15% Similarity=0.087 Sum_probs=183.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHH
Q 021689 64 GKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLY 143 (309)
Q Consensus 64 ~~~l~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lli~~~~~g~~g~~la~~i~~~~~~~~~~~~ 143 (309)
...++...+..+........++.+|+.++++......+.+ ..-....+.+. ........++...+..........+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (480)
T COG2244 117 ALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSIVSS-IFLLAAVFALL---FAALGLAVWALVLGAVVSLLVLLIL 192 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH-HHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3457888999999999999999999999999999994444 21122222222 1345555666666666666665555
Q ss_pred HHhcccCccCCCCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021689 144 IFITKSDGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFN 223 (309)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 223 (309)
..+++.+..+...+ ..++..|+.++.++|.............+|+++++..-. +.++|.|+.+.++......+..+++
T Consensus 193 ~~~~~~~~~~~~~~-~~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~-~~~vG~Y~~a~~i~~~~~~~~~~l~ 270 (480)
T COG2244 193 LGKKKRGLKRPILR-FSLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLG-PAQVGIYSAAQRLVSLLLIVASALN 270 (480)
T ss_pred HHHhhhhccccccC-chhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh-hhHheecccccHHHHHHHHHHHHHH
Confidence 54222111111111 135789999999999999999999999999999987752 6689999999999999999999999
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021689 224 AAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQP 303 (309)
Q Consensus 224 ~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 303 (309)
.+..|.+++...++|.++.++..+++.++...++.|..+++..+++++..++.+++. +.+.+.++++++..++.++..
T Consensus 271 ~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~--~~~~~~l~il~~~~~~~~~~~ 348 (480)
T COG2244 271 RVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY--ASAAPILQLLALAGLFLSLVS 348 (480)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc--cchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999876653 237788888888887777766
Q ss_pred hhh
Q 021689 304 VLS 306 (309)
Q Consensus 304 ~~~ 306 (309)
..+
T Consensus 349 ~~~ 351 (480)
T COG2244 349 LTS 351 (480)
T ss_pred HHH
Confidence 654
No 16
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.70 E-value=6.5e-16 Score=138.16 Aligned_cols=145 Identities=12% Similarity=0.142 Sum_probs=132.4
Q ss_pred CcchhhhHhhhhhCCCchhhHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhcCC-ChHHHHHHHHHHHHHHhHHHHHH
Q 021689 1 MGSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSP-LYVWSPPVLMLFGE-TAEISNAAGKFALWMLPQLFAYA 78 (309)
Q Consensus 1 l~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~i~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~ 78 (309)
++.|.++.+||++|+||+|++++..+.++.+++..+++.++ ++.+.+++.++|++ |||+.+.+.+|+++..++.++.+
T Consensus 290 i~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~ 369 (453)
T PRK09575 290 IAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDG 369 (453)
T ss_pred HHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999877 67899999999985 78999999999999999999999
Q ss_pred HHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHhc
Q 021689 79 LNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFIT 147 (309)
Q Consensus 79 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lli~~~~~g~~g~~la~~i~~~~~~~~~~~~~~~~ 147 (309)
+..+..+++||.||++.+++.++...++++++.+++.. .+|+.|+|+++.+++++..+...+.++++
T Consensus 370 ~~~~~~~~~~~~g~~~~~~~~~~~~~~v~ip~~~ll~~--~~G~~Gvw~a~~~~~~~~~~~~~~~~~~~ 436 (453)
T PRK09575 370 FLVLASAYFMAVNQGGKALFISIGNMLIQLPFLFILPK--WLGVDGVWLAMPLSNIALSLVVAPMLWRD 436 (453)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHhHHHHHHHHHHHHH--HHCcchHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888888888764 47999999999999999988887777654
No 17
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.70 E-value=1.1e-15 Score=137.17 Aligned_cols=145 Identities=12% Similarity=0.025 Sum_probs=137.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHH
Q 021689 162 ADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNARA 241 (309)
Q Consensus 162 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~g~~~~~~ 241 (309)
+..|++++.++|.++++..+.....+|+.+++++| ++++|+++++.++..+...+..+++++..+.++|++|+||+|+
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG--~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~ 103 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLG--KEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRR 103 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 45899999999999999999999999999999998 7789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc--CcHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Q 021689 242 AKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFT--NSEAVAAETTKLSILLAITVLMNCLQPVLSGN 308 (309)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 308 (309)
+++..+.++.+++.++++.+++.+.+++++.+++. .|+|+.+.+.+++++..++.++.+++.+.++.
T Consensus 104 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~ 172 (478)
T PRK10189 104 ARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGA 172 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999995 69999999999999999999999988887664
No 18
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.69 E-value=1.3e-15 Score=136.46 Aligned_cols=146 Identities=16% Similarity=0.127 Sum_probs=135.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 021689 160 AFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNA 239 (309)
Q Consensus 160 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~g~~~~ 239 (309)
+++..|++++.++|.++.+..+.....+|..+++++| ++++++++++.++..+...+..+++++..+.++|++|+||+
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg--~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~ 82 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLG--PEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDI 82 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 3467899999999999999999999999999999998 67899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Q 021689 240 RAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGN 308 (309)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 308 (309)
+++++..++++.+..+++++..+... +.+++.++|+.|||+.+.+.+++++..++.++..+....++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~ 150 (464)
T PRK00187 83 EGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGF 150 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998877766 568999999999999999999999999999998888877654
No 19
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.67 E-value=5e-15 Score=132.88 Aligned_cols=147 Identities=14% Similarity=0.051 Sum_probs=137.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 021689 160 AFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNA 239 (309)
Q Consensus 160 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~g~~~~ 239 (309)
.++.+|++++.++|.++++........+|..+++++| ++++++++++.++..+...+..+++.+..|.+++++|+||+
T Consensus 7 ~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g--~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~ 84 (456)
T PRK01766 7 YKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVS--ATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRR 84 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 3467999999999999999999999999999999998 66789999999998888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Q 021689 240 RAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGN 308 (309)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 308 (309)
|++++..+.++.+++.++++.++.++.+++++.+++..|+|+.+.+.+++++.+++.++..++.+..+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~ 153 (456)
T PRK01766 85 ERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSF 153 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999888777654
No 20
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.66 E-value=1.6e-16 Score=122.26 Aligned_cols=135 Identities=23% Similarity=0.276 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 021689 173 ASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSIT 252 (309)
Q Consensus 173 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~ 252 (309)
|.+++++.+...+.++..+.+++| ++++++++++.++..+...+..+++++..+.+++++|+||+|++++..++++++
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 889999999999999999999997 678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccccCcHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCC
Q 021689 253 AVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGNY 309 (309)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L 309 (309)
+..++++.++.+..+++++.++|++|+|+.+.+.+++++..++.++.+.....++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 135 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGIL 135 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCC
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888764
No 21
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.65 E-value=1.1e-14 Score=129.63 Aligned_cols=146 Identities=22% Similarity=0.195 Sum_probs=140.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChH
Q 021689 161 FADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNAR 240 (309)
Q Consensus 161 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~g~~~~~ 240 (309)
++..|+++++++|..+.++.+.....+|++++++++ ++++++-+++.++..+...+..+++.+..+.++|++|+||++
T Consensus 13 ~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~--~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 13 KKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG--AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchH
Confidence 357899999999999999999999999999999999 778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Q 021689 241 AAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGN 308 (309)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 308 (309)
++|+..+++..++...+++.+++.+.+++++.+++.+++|+.+.+.+++++..++.++..++.+..+.
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~ 158 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGI 158 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998899999999999999999999999887764
No 22
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.64 E-value=1.3e-14 Score=129.06 Aligned_cols=147 Identities=14% Similarity=0.084 Sum_probs=136.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChH
Q 021689 161 FADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNAR 240 (309)
Q Consensus 161 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~g~~~~~ 240 (309)
+++.|++++.++|.++.+..+.....+|..++++++ ++.++++.+++.++..+...+..+++.+..+.++|++|+||+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~-g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLD-SPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 356889999999999999999999999999999985 2567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Q 021689 241 AAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGN 308 (309)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 308 (309)
++++..++++.++.+++++.++....+.+++.++++.|||+.+.+.+++++..++.++..++.+.++.
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~ 151 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGW 151 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888899999999999999999999999999999998888877654
No 23
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.62 E-value=6.8e-14 Score=127.18 Aligned_cols=169 Identities=22% Similarity=0.204 Sum_probs=141.5
Q ss_pred cchhhhHhhhhhCCCchhhHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhcCC----ChHHHHHHHHHHHHHHhHHHH
Q 021689 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSP-LYVWSPPVLMLFGE----TAEISNAAGKFALWMLPQLFA 76 (309)
Q Consensus 2 ~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~i~~~~~~----~~~~~~~~~~~l~~~~~~~~~ 76 (309)
+.+..|.+||++|++|+|+.++..+++.......+++.+. +..+++++..++.+ |+|..+.+..++++.+++.++
T Consensus 280 ~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~ 359 (502)
T TIGR01695 280 STVLLPKLSRHASEGNWNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIF 359 (502)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4577899999999999999999999999999999999887 78899999988855 567788899999999999999
Q ss_pred HHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHhcccCccCCCC
Q 021689 77 YALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKSDGAWSGF 156 (309)
Q Consensus 77 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lli~~~~~g~~g~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (309)
..+.......+++.||++.+++.++...++|++++++++. .+|..|+++++.+++.+..++..++.+|+....+
T Consensus 360 ~~~~~~~~~~l~a~g~~~~~~~~~~~~~~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~---- 433 (502)
T TIGR01695 360 YSLQKVLLRAFYARKDTRTPFINSVISVVLNALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNRRLKGIL---- 433 (502)
T ss_pred HHHHHHHHHhhHhccCCccCHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcCC----
Confidence 9999999999999999999999999999999999999876 5899999999999999999988877765411101
Q ss_pred CHHHHHhhHHHHHHHHHHHHHHH
Q 021689 157 SWLAFADLWAFVKLSLASAVMLC 179 (309)
Q Consensus 157 ~~~~~~~~~~~~~~~~p~~~~~~ 179 (309)
..+..+++.|...+...+..
T Consensus 434 ---~~~~~~~~~~~~~as~~m~~ 453 (502)
T TIGR01695 434 ---PFGVLKVLAKLVIASAIIGG 453 (502)
T ss_pred ---chHHHHHHHHHHHHHHHHHH
Confidence 11345556666665555433
No 24
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.58 E-value=5.3e-12 Score=105.27 Aligned_cols=216 Identities=19% Similarity=0.225 Sum_probs=154.4
Q ss_pred hhhhHhhhhhCCCch--hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhcCCChHHHHHHHHHHHHHHhHHHHHHHHH
Q 021689 4 ALETLCGQAFGAGSI--RMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALNF 81 (309)
Q Consensus 4 a~~~~~s~~~g~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 81 (309)
|....+.|+..+++. ++.+++.........+.+++...... +...++.++ ... .+........+......
T Consensus 55 G~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~ 126 (273)
T PF01943_consen 55 GLSQAIVRFIAEYKDKKELRSAYFSSVLFLLLIFSLIFLLILL----IASFFGNPS-LSL---ILIILALLILILSSLSS 126 (273)
T ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHcCCch-HHH---HHHHHHHHHHHHHHHHH
Confidence 455555666554443 34455555554444444433333222 212333332 211 12222222225778888
Q ss_pred HHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHhcccCccCCCCCHHHH
Q 021689 82 PIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKSDGAWSGFSWLAF 161 (309)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lli~~~~~g~~g~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (309)
...+++++.++.+.....++...+.......++... +.+..+..++..++..+..++..++.+|+. + .+..+.++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~ 201 (273)
T PF01943_consen 127 VFSGLLQGLQRFKYIAISNIISSLLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKL-R---PRFSFFSK 201 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-c---ccccccch
Confidence 999999999999999999999999888776666654 445889999999999999888888877652 1 22222235
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021689 162 ADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNE 233 (309)
Q Consensus 162 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~ 233 (309)
+..|++++.+.|..............|.++++.+.+ ++++|.|+++.++......+..+++++..|.+++.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g-~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 202 KFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLG-PEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 789999999999999999999999999999988763 66799999999999999999999999999999985
No 25
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.53 E-value=1.5e-12 Score=117.92 Aligned_cols=142 Identities=22% Similarity=0.217 Sum_probs=126.5
Q ss_pred cchhhhHhhhhhCCCchhhHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhcCCChHHHHHHHHHHHHHHhHHHHHHHH
Q 021689 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSP-LYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALN 80 (309)
Q Consensus 2 ~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 80 (309)
+.+..|.++|+.|+||+|+.++..+++..+....+++.++ +..+.+++..++.++++ +.++++++++..++..+.
T Consensus 292 ~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~ 367 (488)
T TIGR02900 292 STALVPDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFS 367 (488)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999998877 77888999988865443 567899999999999999
Q ss_pred HHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHhc
Q 021689 81 FPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFIT 147 (309)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lli~~~~~g~~g~~la~~i~~~~~~~~~~~~~~~~ 147 (309)
....+.+++.||+|.+++.++...++|++++++++....+|+.|+++++.+++.+..++..+..+|.
T Consensus 368 ~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 368 APLQSILQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988743378999999999999999999988877653
No 26
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.50 E-value=8.6e-12 Score=111.27 Aligned_cols=144 Identities=21% Similarity=0.192 Sum_probs=132.2
Q ss_pred cchhhhHhhhhhCCCchhhHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhcC----CChHHHHHHHHHHHHHHhHHHH
Q 021689 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSP-LYVWSPPVLMLFG----ETAEISNAAGKFALWMLPQLFA 76 (309)
Q Consensus 2 ~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~i~~~~~----~~~~~~~~~~~~l~~~~~~~~~ 76 (309)
++..-|.+||...+||.++.++.+++++.....+.+|.++ +..+++|+.+.+. -++|-.+.....++++++++|+
T Consensus 255 ~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~ 334 (451)
T PF03023_consen 255 STVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPF 334 (451)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHH
Confidence 3456688999999999999999999999999999999987 7899999998874 2666778889999999999999
Q ss_pred HHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHhc
Q 021689 77 YALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFIT 147 (309)
Q Consensus 77 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lli~~~~~g~~g~~la~~i~~~~~~~~~~~~~~~~ 147 (309)
+++...+...+.++||+|.++..++.+.++|++++.++.. .+|..|.++++.++.++..+...+..+|+
T Consensus 335 ~~l~~ll~r~fya~~~~~~~~~~~~~~~~lni~l~~~l~~--~~g~~Glala~sl~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 335 YALNDLLSRVFYALGDTKTPVRISVISVVLNIILSILLVP--FFGVAGLALATSLSAIISALLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988887 78999999999999999999998888765
No 27
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.49 E-value=1.1e-14 Score=111.92 Aligned_cols=112 Identities=26% Similarity=0.397 Sum_probs=107.2
Q ss_pred cchhhhHhhhhhCCCchhhHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhcCCChHHHHHHHHHHHHHHhHHHHHHHH
Q 021689 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSP-LYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALN 80 (309)
Q Consensus 2 ~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 80 (309)
+.|+++.+||++|++|+|+.++..+.++.+..+.+++.++ ...+.+++.+++++|+|+.+.+.+|+++..++.|+..+.
T Consensus 49 ~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (162)
T PF01554_consen 49 ATALQILISQNIGAGDYKRAKKVVRQGLLLSLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALF 128 (162)
T ss_dssp HHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccceeecccccccccccccccccccccchhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHH
Confidence 5788999999999999999999999999999999999987 689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccchhHHHHHHHHHH-HHHHHHHHH
Q 021689 81 FPIQKFLQAQRKVLVMAWISAIVL-VLHALFSWL 113 (309)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~l 113 (309)
...++++|+.||++.+++.++.+. +++++++++
T Consensus 129 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~yl 162 (162)
T PF01554_consen 129 FVFSGILQGIGRTKIAMYISIISFWIINIPLAYL 162 (162)
T ss_dssp HHHCCCCGCCSTHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCcHHHHHHHHHHHHHHHHHhHHhC
Confidence 999999999999999999999999 999999875
No 28
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.47 E-value=1.6e-12 Score=112.31 Aligned_cols=134 Identities=17% Similarity=0.142 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 021689 173 ASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSIT 252 (309)
Q Consensus 173 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~ 252 (309)
|.++.+........+++.+++++| ++++++++.+.++..+...+..+++++..|.+++++|++|+|++++..++...+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 677888889999999999999998 667899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccccCcHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Q 021689 253 AVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGN 308 (309)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 308 (309)
...++++.+++...+++++.++++.|+|..+.+.++++++.+..++.+++....+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~ 134 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGF 134 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999878888899999999999999999988776653
No 29
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.47 E-value=7.5e-11 Score=104.44 Aligned_cols=173 Identities=21% Similarity=0.201 Sum_probs=142.2
Q ss_pred cchhhhHhhhhhCCCchhhHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhcCC----ChHHHHHHHHHHHHHHhHHHH
Q 021689 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSP-LYVWSPPVLMLFGE----TAEISNAAGKFALWMLPQLFA 76 (309)
Q Consensus 2 ~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~i~~~~~~----~~~~~~~~~~~l~~~~~~~~~ 76 (309)
++..-|.+||...++|.++.++.++.++.++.++.+|.+. +..+++|+.+.+.. +++-.......++.+..++++
T Consensus 289 ~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~ 368 (518)
T COG0728 289 STVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIP 368 (518)
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHH
Confidence 3566789999999999999999999999999999999988 78999999988732 455566778899999999999
Q ss_pred HHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHhcccCccCCCC
Q 021689 77 YALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKSDGAWSGF 156 (309)
Q Consensus 77 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lli~~~~~g~~g~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (309)
..+..++...+++.||+|.|+++.+++.++|+.+++.+.. .+|..|.++++.++.++++.++++..+|+......+
T Consensus 369 ~~L~~ll~~~FYAr~d~ktP~~i~ii~~~~n~~l~~~l~~--~~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~~~-- 444 (518)
T COG0728 369 FALVKLLSRVFYAREDTKTPMKIAIISLVVNILLNLLLIP--PLGHVGLALATSLAAWVNALLLYYLLRKRLVYLPGR-- 444 (518)
T ss_pred HHHHHHHHHHHHHccCCCcChHHHHHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc--
Confidence 9999999999999999999999999999999999977666 778888999999999999999988888763322222
Q ss_pred CHHHHHhhHHHHHHHHHHHHHHHHHH
Q 021689 157 SWLAFADLWAFVKLSLASAVMLCLEF 182 (309)
Q Consensus 157 ~~~~~~~~~~~~~~~~p~~~~~~~~~ 182 (309)
.|.... ..|..+-.+++....+
T Consensus 445 ---~~~~~~-~~k~~l~~~i~~~~~~ 466 (518)
T COG0728 445 ---GWGLFL-ILKLLLASAIMAAALL 466 (518)
T ss_pred ---hhhHHH-HHHHHHHHHHHHHHHH
Confidence 223334 4566555555444333
No 30
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.45 E-value=3.8e-10 Score=92.97 Aligned_cols=210 Identities=18% Similarity=0.189 Sum_probs=148.6
Q ss_pred hhhhHhhhhhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhcCCChHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 021689 4 ALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALNFPI 83 (309)
Q Consensus 4 a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~ 83 (309)
|....+.+. .++|+++.++..+.......+.+++...+ ...+...+ ++++ ...++....+..+........
T Consensus 40 g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~ 110 (251)
T PF13440_consen 40 GLRQSLVRS-AARDKQDIRSLLRFSLLVSLLLAVILAIL---AILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLF 110 (251)
T ss_pred HHHHHHHHh-hccCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHH
Confidence 344444442 34556666777666665555544443332 11122233 3332 234566777888889999999
Q ss_pred HHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHhcccCccCCCCCHHHHHh
Q 021689 84 QKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKSDGAWSGFSWLAFAD 163 (309)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lli~~~~~g~~g~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (309)
++.+++++|.+.....+....+.......++.. .+.+..+..++..++..+..++.....+++ .+.++ +.+.
T Consensus 111 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~ 182 (251)
T PF13440_consen 111 RSILRARGRFRAYALIDIVRSLLRLLLLVLLLY-LGLNLWSILLAFIISALLALLISFYLLRRK---LRLSF----KFSW 182 (251)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHhccc---cCCCc----hhhH
Confidence 999999999999999999999888544444443 244888899999999888877766643321 11111 1122
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Q 021689 164 LWAFVKLSLASAVMLCLEFWYLMLLVVITGR-LPNALIAVDAISVCMNIQGWDA-MIAIGFNAAISVRVSNE 233 (309)
Q Consensus 164 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~a~~~~~~~~ 233 (309)
.| ..+.+.|..+.+...+.....+.++++. +| .+++|.|+++.++..... .+..++++...|.++|+
T Consensus 183 ~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~--~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~ 251 (251)
T PF13440_consen 183 RR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFLG--PEAVGIYSVAQRLASLPASLLSSAISSVFFPKLARM 251 (251)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34 6899999999999999999999999998 65 678999999999999888 99999999999999873
No 31
>PRK10459 colanic acid exporter; Provisional
Probab=99.21 E-value=2.5e-08 Score=90.64 Aligned_cols=136 Identities=18% Similarity=0.035 Sum_probs=114.6
Q ss_pred hhhHhhhhhCCCchhhHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhcCCChHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 021689 5 LETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSP-LYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALNFPI 83 (309)
Q Consensus 5 ~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~ 83 (309)
.-|..++. ++|+++.++.+++........++|.++ +...++|++..+.+++ .+.+...++++++...+..+....
T Consensus 268 ~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~ 343 (492)
T PRK10459 268 AFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPI 343 (492)
T ss_pred HhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44566664 677888999999999999999999877 7788899988875543 456788999999999999999999
Q ss_pred HHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 021689 84 QKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFI 146 (309)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lli~~~~~g~~g~~la~~i~~~~~~~~~~~~~~~ 146 (309)
...+++.||+|..+..++...+++++..+.+.. .+|+.|+++++.+++.+......++..|
T Consensus 344 ~~~l~a~g~~~~~~~~~~~~~~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 344 GSLLLAKGRADLSFKWNVFKTFLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHcCccchhHHHHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988888887666654 6799999999999999988888777754
No 32
>PRK15099 O-antigen translocase; Provisional
Probab=99.01 E-value=2e-08 Score=89.22 Aligned_cols=139 Identities=13% Similarity=0.065 Sum_probs=115.6
Q ss_pred cchhhhHhhhhhCCCchhhHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhcCCChHHHHHHHHHHHHHHhHHHHHHHH
Q 021689 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSP-LYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALN 80 (309)
Q Consensus 2 ~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 80 (309)
+++..|.++|+ +|+|+.++..+.........+++.+. ...+++++++++.+++ .+.+.+++++.+++.++...+
T Consensus 273 ~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~ 347 (416)
T PRK15099 273 SVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGA 347 (416)
T ss_pred HHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 46788999984 56788889999999888888888776 6788999999987654 233677889988888888777
Q ss_pred HHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHhc
Q 021689 81 FPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFIT 147 (309)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lli~~~~~g~~g~~la~~i~~~~~~~~~~~~~~~~ 147 (309)
..+...+-..++++......+...++++++++++++ .+|..|+++++.+++.+......+...++
T Consensus 348 ~~~g~~~~~~~~~~~~~~~~~~~~~l~i~l~~~li~--~~G~~G~a~a~~is~~~~~~~~~~~~~~~ 412 (416)
T PRK15099 348 YVFGYLVIAKASLRFYILAEVSQFTLLTGFAHWLIP--LHGALGAAQAYMATYIVYFSLCCGVFLLY 412 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777778888999999999988999999999887 68999999999999999998877666543
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=98.97 E-value=1.1e-07 Score=86.21 Aligned_cols=126 Identities=26% Similarity=0.304 Sum_probs=111.9
Q ss_pred cchhhhHhhhhhCCCchhhHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhcCCChHHHHHHHHHHHHHHhHHHHHHHH
Q 021689 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSP-LYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALN 80 (309)
Q Consensus 2 ~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 80 (309)
+...-|.++|...++|+++.++..++++......+++..+ ...+++|+...+.+++.. .+...+++.++..++..+.
T Consensus 270 ~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~--~~~~~l~il~~~~~~~~~~ 347 (480)
T COG2244 270 NRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYA--SAAPILQLLALAGLFLSLV 347 (480)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCccc--chhHHHHHHHHHHHHHHHH
Confidence 3567799999999999999999999999999999999887 788888999887655432 2677899999999999999
Q ss_pred HHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHH
Q 021689 81 FPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLS 132 (309)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lli~~~~~g~~g~~la~~i~ 132 (309)
......+++.||++..+..+..+.+.|.+++++++. ..|..|++.++ .+
T Consensus 348 ~~~~~~l~~~g~~~~~~~~~~~~~i~~~~l~~~li~--~~g~~g~~~a~-~~ 396 (480)
T COG2244 348 SLTSSLLQALGKQRLLLLISLISALLNLILNLLLIP--RFGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHcCcchhhHHHHHHHHHHHHHHHhHHHH--hhhhhhHHHHH-HH
Confidence 999999999999999999999999999999999988 78899999998 44
No 34
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.83 E-value=1.4e-06 Score=65.41 Aligned_cols=79 Identities=25% Similarity=0.330 Sum_probs=74.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 021689 67 ALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFI 146 (309)
Q Consensus 67 l~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lli~~~~~g~~g~~la~~i~~~~~~~~~~~~~~~ 146 (309)
+++.+++.+++.+....+..+++.||++..+..+..+.++|+++++++++ ++|..|+++++.+++.+......+..+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~--~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIP--RFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999976 7999999999999999999998888876
Q ss_pred c
Q 021689 147 T 147 (309)
Q Consensus 147 ~ 147 (309)
+
T Consensus 80 ~ 80 (146)
T PF14667_consen 80 K 80 (146)
T ss_pred H
Confidence 5
No 35
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=98.48 E-value=2.5e-06 Score=76.21 Aligned_cols=142 Identities=13% Similarity=0.211 Sum_probs=124.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCh
Q 021689 161 FADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGW-DAMIAIGFNAAISVRVSNELGAGNA 239 (309)
Q Consensus 161 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~a~~~~~~~~~g~~~~ 239 (309)
+.+.|++.+++.|.++....+.....++....+++| +.++++.+.+.+..+. ...+..++..+..+..+|++|.+++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG--~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLG--NLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcccc--chHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 578899999999999999999999999999999999 5578899998888776 4568889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 021689 240 RAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVL 305 (309)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 305 (309)
+....+.+++..+......+.+...... +++...+.+||++...+..+.++.....+.+....-+
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~l~~~~-~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l 166 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISLLILNS-EPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPL 166 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHcc-HHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHH
Confidence 9999999999999888888888776654 9999999999999999999988888877777665543
No 36
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.32 E-value=0.00065 Score=56.18 Aligned_cols=150 Identities=17% Similarity=0.136 Sum_probs=95.1
Q ss_pred hHHHH-hhcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhh-c----
Q 021689 46 SPPVL-MLFGETAEISNAAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKL-G---- 119 (309)
Q Consensus 46 ~~~i~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lli~~~-~---- 119 (309)
.+.++ +.++.+|++.+.+...+.++.+.-+++++...++|++-=++++......++...+..+++...++... +
T Consensus 110 G~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV~~aSI~~v~~qvV~v~~ll~~~l~~~~p 189 (345)
T PF07260_consen 110 GNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIVGSASIADVIAQVVLVAILLSMHLEPQDP 189 (345)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEeehHHHHHHHHHHHHHHHHHccccCcccc
Confidence 34443 55688999999999999999999999999999999999777777766666666665555555555321 1
Q ss_pred --CchhhHHHHHHHHHHHHHHHHHHHHHhcccCccCCCCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC
Q 021689 120 --WGLIGAAITLNLSWWLIVILQLLYIFITKSDGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGR-LP 196 (309)
Q Consensus 120 --~g~~g~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~ 196 (309)
.++.|...+.. ..+.......|. .-++..+...+..+++...+++++++.+|.+.....++..-.+.+..+++ ++
T Consensus 190 llipil~~y~g~~-vr~t~v~LGy~~-~i~~~~p~~~~~~~~~~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~ 267 (345)
T PF07260_consen 190 LLIPILALYAGIA-VRFTIVCLGYYQ-SIHDIIPQLSGLEKGDSATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLS 267 (345)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHH-HHhhhccccCCcccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 12222211111 111111111111 11122222222223333578999999999999999999988888888888 55
Q ss_pred c
Q 021689 197 N 197 (309)
Q Consensus 197 ~ 197 (309)
.
T Consensus 268 g 268 (345)
T PF07260_consen 268 G 268 (345)
T ss_pred C
Confidence 3
No 37
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=97.90 E-value=0.0014 Score=59.76 Aligned_cols=142 Identities=9% Similarity=-0.011 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCCh--
Q 021689 165 WAFVKLSLASAVMLCLEFWYLMLLVVITGR--LPNALIAVDAISVCMNIQGWDA-MIAIGFNAAISVRVSNELGAGNA-- 239 (309)
Q Consensus 165 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~a~~~~~~~~~g~~~~-- 239 (309)
++..+.......+.+.-.+..+-+.+++.. +.. .++-|.|+++++..+++. .+...+........++...+++.
T Consensus 253 ~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t-~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 253 RDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLT-FEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCC-HHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 678888888888888899999999999988 553 456789999999977765 67778888888888887765433
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 021689 240 -------RAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSG 307 (309)
Q Consensus 240 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 307 (309)
+++.+.....+++...+++.+...-...++.+.+++.++.=.-..+...+++++...++.++|.++-+
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~Ea 406 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEA 406 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHH
Confidence 45667777778888888777777777777777777754321122357889999999999999987643
No 38
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.83 E-value=0.018 Score=50.28 Aligned_cols=284 Identities=11% Similarity=0.008 Sum_probs=146.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhcCC-ChH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchhH
Q 021689 18 IRMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGE-TAE-ISNAAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLV 95 (309)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~~~~~~ 95 (309)
.++..+..+.+.-+..+..+++.-++ +.+... |+. ..+.-..-..+...+...-.+..-+.-..|..-+.+.
T Consensus 81 ~te~~n~~wlS~~L~~~i~~~~i~~w------l~~~~s~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~ 154 (530)
T KOG2864|consen 81 WTEFINLLWLSVPLQTAINVACIYFW------LGFLSSSDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQL 154 (530)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHH------HHHhhccchhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 44556666666666655555543322 121111 111 1122222233444444444445555555666666666
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhhc-CchhhHHHHHHHHHHHHHHHH-HHHHHhcccCccC----------CCC-CHHHH
Q 021689 96 MAWISAIVLVLHALFSWL-LILKLG-WGLIGAAITLNLSWWLIVILQ-LLYIFITKSDGAW----------SGF-SWLAF 161 (309)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l-li~~~~-~g~~g~~la~~i~~~~~~~~~-~~~~~~~~~~~~~----------~~~-~~~~~ 161 (309)
-....-+..+++-...+. ++.+.+ .++.--++|.....+...+.+ +.|++.++.++.. ++. .+++.
T Consensus 155 ~~i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~ 234 (530)
T KOG2864|consen 155 RAIAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERG 234 (530)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCcc
Confidence 667776666666333333 333222 233333444444333333322 2233322311100 000 00000
Q ss_pred H-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCC
Q 021689 162 A-DLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPN-ALIAVDAISVCMNIQGWDA-MIAIGFNAAISVRVSNELGAGN 238 (309)
Q Consensus 162 ~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~-~~~~~~~~a~~~~~~~~~g~~~ 238 (309)
. .=++..+.-.....+.+.-++...-+..+++.... .-.+-|.|.+.++..++.. ++...+........++...+++
T Consensus 235 ~ffd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~ 314 (530)
T KOG2864|consen 235 IFFDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDN 314 (530)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccc
Confidence 0 01233344444444555566666666666663321 1124568988888766554 6777777777777777777766
Q ss_pred hHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhccccccccCcHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 021689 239 ARAAKFS---VLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSG 307 (309)
Q Consensus 239 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 307 (309)
.|+.|+. ....+++...+++.....-...++....++.++.=.-......++++++..++.++|.+.-+
T Consensus 315 qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEa 386 (530)
T KOG2864|consen 315 QENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEA 386 (530)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHH
Confidence 6666554 45566666666666666556677777777754321111245789999999999999988754
No 39
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=97.59 E-value=0.0055 Score=56.06 Aligned_cols=128 Identities=17% Similarity=0.104 Sum_probs=96.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchhHHH
Q 021689 19 RMLGVYMQRSWVILLITSCVLSP-LYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMA 97 (309)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~ 97 (309)
++..+.+...+.+...+++++.. +-..++.++++++++.=..+.+...+++++..+|+.+++++.-++.++....+...
T Consensus 339 ~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a~~~~l~ 418 (549)
T PF04506_consen 339 KQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVASESQLD 418 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhCCHHHHH
Confidence 45666777777777777776655 56677777777754322223346679999999999999999999999988776655
Q ss_pred HHHHH---HHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHhc
Q 021689 98 WISAI---VLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFIT 147 (309)
Q Consensus 98 ~~~~~---~~~~~~~~~~lli~~~~~g~~g~~la~~i~~~~~~~~~~~~~~~~ 147 (309)
..+-. ..++....+++++.. ++|..|..+|+++...+-.+...+++++.
T Consensus 419 ~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 419 RYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444 345556667877775 78999999999999999999998888876
No 40
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.51 E-value=0.0099 Score=49.42 Aligned_cols=138 Identities=12% Similarity=0.143 Sum_probs=98.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChH
Q 021689 162 ADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRL-PNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNAR 240 (309)
Q Consensus 162 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~g~~~~~ 240 (309)
.+.+++.++-+|.+++.....+.-.+.+.-+++- -.+.+.+|+|+++..+.-++..+...+.+.....+.+. .+
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s~-----rs 82 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNSK-----RS 82 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcch-----hh
Confidence 5678899999999999888888888777777663 33345689999999999999999988888776665432 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHhhccc-----cccccCcHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCC
Q 021689 241 AAKFSVLVVSITAVTIGVCCTIL-VLATRYNF-----PFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGNY 309 (309)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i-----~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L 309 (309)
+ ++ ..+...+.+...+.+ .+.--.++ .+++.-||++.+.+...+.++.+..+++++....+|+|
T Consensus 83 r-r~----~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGIL 152 (345)
T PF07260_consen 83 R-RK----AVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGIL 152 (345)
T ss_pred h-HH----HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 1 11 222222333333222 22222333 34456689999999999999999999999999999986
No 41
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.29 E-value=0.0091 Score=51.97 Aligned_cols=131 Identities=17% Similarity=0.180 Sum_probs=96.9
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccch
Q 021689 15 AGSIRMLGVYMQRSWVILLITSCVLSP-LYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALNFPIQKFLQAQRKV 93 (309)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~~~~ 93 (309)
++|.|++..++...+.....+++..+. +-..+++.+.+++++.=....+..-+++++..+|+.+++++.-+++.+.+..
T Consensus 315 qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~ 394 (530)
T KOG2864|consen 315 QENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATS 394 (530)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccH
Confidence 455566666777777777777766554 6677778888876543223334567999999999999999999999987766
Q ss_pred hHHHH---HHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHhc
Q 021689 94 LVMAW---ISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFIT 147 (309)
Q Consensus 94 ~~~~~---~~~~~~~~~~~~~~lli~~~~~g~~g~~la~~i~~~~~~~~~~~~~~~~ 147 (309)
+-... ...+..+...+.+++++. .+|..|..+|+++...+-.+....++++.
T Consensus 395 ~qi~~~n~~mlafSviflilsylL~~--~~~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 395 RQIDKHNKFMLAFSVIFLILSYLLIR--WFGLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHH--HhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55443 344555667788888887 46679999999999988888887777765
No 42
>COG4267 Predicted membrane protein [Function unknown]
Probab=94.34 E-value=3.1 Score=35.95 Aligned_cols=198 Identities=15% Similarity=0.166 Sum_probs=111.5
Q ss_pred hHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHhc-ccC
Q 021689 72 PQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFIT-KSD 150 (309)
Q Consensus 72 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lli~~~~~g~~g~~la~~i~~~~~~~~~~~~~~~~-~~~ 150 (309)
......+..-....++.+.+|.+.....-..+..+.+.+..++- +.+..|..++..++..........+..|. +.+
T Consensus 139 ~~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~ 215 (467)
T COG4267 139 ALFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFYILRYFKSS 215 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccc
Confidence 33444455666678899999999999999999988888776654 46899999999999999988888887776 322
Q ss_pred ccCCCCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHH------HHHHHHHHHHHHHHHHHH---
Q 021689 151 GAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVD------AISVCMNIQGWDAMIAIG--- 221 (309)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~~~~~~~~--- 221 (309)
+...++-. +..++..+ ..+.....+.+.-+++.+.=.-+.++...+ -|.+..-...+...+..+
T Consensus 216 -~~i~FdFL--~~~~~y~S----LllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~ 288 (467)
T COG4267 216 -RRIGFDFL--LYRRKYPS----LLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFL 288 (467)
T ss_pred -cccceehh--hhhhcchH----HHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheee
Confidence 11112111 11111111 122233344444444433211111121111 133333333333333222
Q ss_pred --HHHHHHHHHHHhh----c-------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcH
Q 021689 222 --FNAAISVRVSNEL----G-------AGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSE 279 (309)
Q Consensus 222 --~~~a~~~~~~~~~----g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 279 (309)
+.+-..+.--+.+ | +++.++.....|+.+.-.+-+-...++.+.+.++.+...+.-|+
T Consensus 289 i~lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~ 359 (467)
T COG4267 289 ISLETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSE 359 (467)
T ss_pred eeeeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH
Confidence 2232222211111 1 13455566667777777777778888888888888888776554
No 43
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=93.87 E-value=2.9 Score=33.88 Aligned_cols=68 Identities=12% Similarity=0.187 Sum_probs=42.5
Q ss_pred HHHHhcCCchhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 021689 189 VVITGRLPNALIAVDAISVCMNIQGWDAMIA-IGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTIL 263 (309)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (309)
..+...++ +++.|.|+....+..+...+. .++++...- ..++|+++.++..+..............++
T Consensus 9 ~~lar~l~--~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (251)
T PF13440_consen 9 ILLARYLG--PEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAIL 77 (251)
T ss_pred HHHHHHCC--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556 567889999999888888763 344443322 234667777777777766655555444443
No 44
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=84.60 E-value=20 Score=29.17 Aligned_cols=64 Identities=11% Similarity=0.079 Sum_probs=40.3
Q ss_pred HHHHhcCCchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 021689 189 VVITGRLPNALIAVDAISVCMNIQGWDAMI-AIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTI 256 (309)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 256 (309)
.++...+| +++.|.|+....+..+...+ ..|++++..-..++...+ .++.++............
T Consensus 24 ~il~r~l~--~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~ 88 (273)
T PF01943_consen 24 PILARYLG--PEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFSSVLFLLLIF 88 (273)
T ss_pred HHHHHHhC--HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHH
Confidence 44445566 66788999999998888776 667888887777765432 334444444444333333
No 45
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=79.68 E-value=15 Score=24.29 Aligned_cols=37 Identities=14% Similarity=0.104 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHH
Q 021689 222 FNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGV 258 (309)
Q Consensus 222 ~~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 258 (309)
++...+..+.+++.+||++++++..+++.+++.+-..
T Consensus 36 ~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~ 72 (82)
T PF04505_consen 36 VAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAII 72 (82)
T ss_pred HHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHH
Confidence 3444556788888999999999999999998754433
No 46
>COG4267 Predicted membrane protein [Function unknown]
Probab=74.50 E-value=60 Score=28.52 Aligned_cols=118 Identities=10% Similarity=0.197 Sum_probs=64.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchhH
Q 021689 17 SIRMLGVYMQRSWVILLITSCVLSP-LYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLV 95 (309)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~~~~~~ 95 (309)
+++++...+++.+.-..-+-...++ +...++.+..+++-++-..+ ..++-..+...+..........-=.++-+.
T Consensus 318 ~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~~l~----lF~vd~lg~s~~i~f~~ll~i~lyfd~r~i 393 (467)
T COG4267 318 NLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEYYLD----LFYVDVLGVSCQIVFMSLLNIFLYFDYRRI 393 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3445555666665554444444444 66778888888876654333 244444444444333333333333456667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHH
Q 021689 96 MAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQL 141 (309)
Q Consensus 96 ~~~~~~~~~~~~~~~~~lli~~~~~g~~g~~la~~i~~~~~~~~~~ 141 (309)
.+.....-.+.|.+++++.... +-|..|+ +..++..+...+..
T Consensus 394 ~l~~t~~fli~N~ilT~i~l~l-gp~~~g~--gff~a~fl~vlv~~ 436 (467)
T COG4267 394 ALELTALFLISNGILTFIFLEL-GPGYYGV--GFFLASFLYVLVAF 436 (467)
T ss_pred hhhhhhHHHHHhHHHHHHHHHh-Cccceeh--HHHHHHHHHHHHHH
Confidence 7777777778888888887652 3344443 33444444444443
No 47
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=69.16 E-value=33 Score=27.47 Aligned_cols=62 Identities=5% Similarity=-0.030 Sum_probs=32.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhcCCCh---------HHHHHHHHHHHHHHhHHHHHH
Q 021689 17 SIRMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETA---------EISNAAGKFALWMLPQLFAYA 78 (309)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~ 78 (309)
++++..+.+..++...+++.+++++++.+..++..+++.+. +..+....|+++++.++|...
T Consensus 142 ~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v~~ly~~ia~~ik~se~~~~~lwyi~Y~vPY~~ 212 (230)
T PF03904_consen 142 KYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHVDHLYKAIASKIKASESFWTYLWYIAYLVPYIF 212 (230)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHhhhHhHHHHHHHHHHhhHHHH
Confidence 34455555555555555554555556666777777665321 112224456666665555544
No 48
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=50.05 E-value=2e+02 Score=26.23 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=15.1
Q ss_pred HccchhHHHHHHHHHHHHHHHHHHHH
Q 021689 89 AQRKVLVMAWISAIVLVLHALFSWLL 114 (309)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~ll 114 (309)
-++|.+...+-+..+.+-+.+...+.
T Consensus 144 ~~ER~~l~s~R~~~~~~g~~l~~~~~ 169 (467)
T COG2211 144 PQERASLTSWRMVFASLGGLLVAVLF 169 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777776666665554444333
No 49
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=45.56 E-value=2.3e+02 Score=25.45 Aligned_cols=32 Identities=6% Similarity=-0.183 Sum_probs=19.6
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021689 234 LGAGNARAAKFSVLVVSITAVTIGVCCTILVL 265 (309)
Q Consensus 234 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (309)
+++-+.++..+..+.+.+.+..+...++....
T Consensus 256 ~~~~~~~~l~~~l~~~~~~~~~i~~iia~a~~ 287 (416)
T PF06808_consen 256 YRRLSWKDLWRALVETARTTGMILFIIAAAGI 287 (416)
T ss_pred hcccChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777766665554444333
No 50
>PF14184 YrvL: Regulatory protein YrvL
Probab=43.41 E-value=1.3e+02 Score=22.03 Aligned_cols=103 Identities=16% Similarity=0.139 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhhcCCChH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchhHHHHHHHHHH
Q 021689 26 QRSWVILLITSCVLSPLYVWSPPVLMLFGETAE-ISNAAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVL 104 (309)
Q Consensus 26 ~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 104 (309)
.......+...++.+...+....+.+++|-+-| ......-.+-....+.|+..+...+...+.-.+-++.. ......
T Consensus 5 ~~~i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~--~~~l~~ 82 (132)
T PF14184_consen 5 IIFIIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRL--FILLAF 82 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHH--HHHHHH
Confidence 344444555555555556666778888875432 22233334455566777777777766666655333322 233455
Q ss_pred HHHHHHHHHHHHhhcCchhhHHHHHH
Q 021689 105 VLHALFSWLLILKLGWGLIGAAITLN 130 (309)
Q Consensus 105 ~~~~~~~~lli~~~~~g~~g~~la~~ 130 (309)
++....+++.++..+.=+.+..+.+.
T Consensus 83 ~id~~~t~~~i~~aD~~m~sI~is~~ 108 (132)
T PF14184_consen 83 IIDFLFTWITIYTADELMESISISTL 108 (132)
T ss_pred HHHHHHHHHHHHHHHHHhcceeeCcH
Confidence 67788888877755433444444333
No 51
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=42.36 E-value=50 Score=23.76 Aligned_cols=26 Identities=19% Similarity=0.107 Sum_probs=11.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhc
Q 021689 122 LIGAAITLNLSWWLIVILQLLYIFIT 147 (309)
Q Consensus 122 ~~g~~la~~i~~~~~~~~~~~~~~~~ 147 (309)
+.|..+|.+.+.+...++..|.++|+
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555444444444444444
No 52
>PF03609 EII-Sor: PTS system sorbose-specific iic component; InterPro: IPR004700 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=37.13 E-value=2.3e+02 Score=23.15 Aligned_cols=91 Identities=10% Similarity=-0.035 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhccccc-cccCcHHH----H
Q 021689 209 MNIQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCC-TILVLATRYNFPF-LFTNSEAV----A 282 (309)
Q Consensus 209 ~~i~~~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~-l~~~~~~~----~ 282 (309)
..+.+....+....+.....+.-+...++|.+++++................ ..+...+..+..+ +...=||. .
T Consensus 103 ~~lg~~l~~~~~~~n~~~~~~adk~ae~gn~~~i~~~~~~~~~~~~~~~~v~~~fl~~~~G~~~v~~~~~~iP~~v~~gl 182 (238)
T PF03609_consen 103 GILGQQLDNLLRTINSFFVHRADKAAEEGNYKKINRIHWIGPILFFLIYFVPPVFLAVYFGSDAVQALLNAIPEWVLNGL 182 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhHHHHHHH
Confidence 3344555566667788888888888888999999888776655544444333 4444444444433 43322332 4
Q ss_pred HHHHHHHHHHHHHHHhh
Q 021689 283 AETTKLSILLAITVLMN 299 (309)
Q Consensus 283 ~~~~~~l~~~~~~~~~~ 299 (309)
+.+...+|-..++...+
T Consensus 183 ~vagg~LPAvGfAmll~ 199 (238)
T PF03609_consen 183 NVAGGMLPAVGFAMLLK 199 (238)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555666555554443
No 53
>PRK15065 PTS system mannose-specific transporter subunit IIC; Provisional
Probab=33.19 E-value=2.9e+02 Score=23.04 Aligned_cols=85 Identities=12% Similarity=0.172 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH-HHHHHHHHHHHHHH-HHHhhccccccccCcHHH----HHHHHHH
Q 021689 215 DAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVV-SITAVTIGVCCTIL-VLATRYNFPFLFTNSEAV----AAETTKL 288 (309)
Q Consensus 215 ~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~i~~l~~~~~~~----~~~~~~~ 288 (309)
...+...++..+..+.-+...++|.++.++..... ....+....+..+. +++-++.+-.+...=||. .+.+..+
T Consensus 109 l~~~~~~~n~~~~h~adk~ae~g~~k~i~~~~~~~~~~~~~~~~~~~f~~~~~fG~~~v~~~~~~iP~~v~~GL~vaggm 188 (262)
T PRK15065 109 LTIIVRTITVAFQHAADKAAEEGNFRAIEWLHVSALLLQALRIAIPAALVALAVGTSAVQSMLNAIPEVLTGGLNIGGGM 188 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHCHHHHHHHHHHHHhh
Confidence 34455566777777777777788888886554333 33333444444443 333344333333322321 4445555
Q ss_pred HHHHHHHHHhh
Q 021689 289 SILLAITVLMN 299 (309)
Q Consensus 289 l~~~~~~~~~~ 299 (309)
+|-+.++...+
T Consensus 189 LPAvGfAmLl~ 199 (262)
T PRK15065 189 IVVVGYAMVIN 199 (262)
T ss_pred HHHHHHHHHHH
Confidence 65555554443
No 54
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=32.94 E-value=2.9e+02 Score=23.05 Aligned_cols=84 Identities=7% Similarity=0.082 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccccccccCcHH----HHHHHHHHH
Q 021689 215 DAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVV-SITAVTIGVCCTILVLATRYNFPFLFTNSEA----VAAETTKLS 289 (309)
Q Consensus 215 ~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~----~~~~~~~~l 289 (309)
...+...++..+..+.-+...++|.+++++..... ....+...++..+.+++.++.+-.+...-|| -.+.+..++
T Consensus 109 l~~~~~~~~s~~~h~adk~ae~gn~k~i~~~~~~~~~~~~~~~~i~~fla~~~G~~~v~~il~~iP~~v~~Gl~vaggmL 188 (265)
T TIGR00822 109 LTIFVRTITVLFQHAADKAAKEANTAAISRLHVTAMLIQALRVAIPALIVALVSQSAVQAMLKAIPEVVTHGLQIAGGII 188 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHCHHHHHHHHHHHHhhH
Confidence 34455566677777777777888888886553332 2233333444433333333333333322232 144455555
Q ss_pred HHHHHHHHh
Q 021689 290 ILLAITVLM 298 (309)
Q Consensus 290 ~~~~~~~~~ 298 (309)
+-+.++...
T Consensus 189 PAvGfAmLl 197 (265)
T TIGR00822 189 VVVGYAMVL 197 (265)
T ss_pred HHHHHHHHH
Confidence 555554443
No 55
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=32.15 E-value=2.6e+02 Score=22.17 Aligned_cols=59 Identities=8% Similarity=-0.135 Sum_probs=37.8
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcHHHHHHHHHHHH
Q 021689 228 VRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSI 290 (309)
Q Consensus 228 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~ 290 (309)
|.....-++.+.++-++..++.. .+.....+.+.+..+++.++|.-+-+....+...+-
T Consensus 25 pvfl~lt~~~~~~~r~~ia~~~~----l~a~~ill~f~~~G~~iL~~fgIsl~afrIaGGiiL 83 (201)
T TIGR00427 25 PIFISLTEYYTAAERNKIAKKAN----ISSFIILLIFLVFGDTILKLFGISIDAFRIAGGILL 83 (201)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 55555555566666666666665 444555557777889999999766655555554443
No 56
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=30.59 E-value=3.8e+02 Score=23.68 Aligned_cols=36 Identities=14% Similarity=0.291 Sum_probs=28.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhh
Q 021689 17 SIRMLGVYMQRSWVILLITSCVLSP-LYVWSPPVLML 52 (309)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~i~~~ 52 (309)
++++.+++++.+...+......... .....-|+...
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~ 125 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQ 125 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567999999999999998877765 67777788763
No 57
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=30.38 E-value=3.3e+02 Score=22.80 Aligned_cols=83 Identities=7% Similarity=-0.027 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccccccccCcHHH----HHHHHHHHH
Q 021689 216 AMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSI-TAVTIGVCCTILVLATRYNFPFLFTNSEAV----AAETTKLSI 290 (309)
Q Consensus 216 ~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~----~~~~~~~l~ 290 (309)
..+...++..+.++.-+...++|+++.++....... ..+....+..+.+++-++.+-.+...-|+. .+.+..+++
T Consensus 111 ~~~~~~~~~~~~~~adk~ae~gn~k~i~~~~~~~~~~~~~~~~~~~fl~~~fG~~~v~~~~~~iP~~v~~GL~vaggmLP 190 (267)
T PRK09757 111 ILFFYSAFSLFMTKADKCAKEADTAAFSRLNWTTMLIVASAYAVIAFLCTYLAQGAMQALVKAMPAWLTHGFEVAGGILP 190 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 344555667777777777778888888665443332 222233333333333333333333222321 334444555
Q ss_pred HHHHHHHh
Q 021689 291 LLAITVLM 298 (309)
Q Consensus 291 ~~~~~~~~ 298 (309)
-+.++...
T Consensus 191 AvGfAmLl 198 (267)
T PRK09757 191 AVGFGLLL 198 (267)
T ss_pred HHHHHHHH
Confidence 44444433
No 58
>PRK10739 putative antibiotic transporter; Provisional
Probab=30.31 E-value=2.8e+02 Score=21.95 Aligned_cols=55 Identities=11% Similarity=0.059 Sum_probs=33.3
Q ss_pred hhHhhhhhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhcCCChHHHHHH
Q 021689 6 ETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETAEISNAA 63 (309)
Q Consensus 6 ~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~ 63 (309)
.|..-..-...++++.++..++.....+...+ +..+..+.+++.|+-+-+..+.+
T Consensus 21 ipiflslt~~~~~~~r~~ia~~a~~~a~~ill---~f~~~G~~iL~~fGIsl~afrIA 75 (197)
T PRK10739 21 LPIFMSVLKHLEPKRRRAIMIRELLIALLVML---VFLFAGEKILAFLNLRTETVSIS 75 (197)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhCCCHHHHHHH
Confidence 34444444455666666676666555544332 35666889999998876554443
No 59
>PRK11111 hypothetical protein; Provisional
Probab=29.01 E-value=3e+02 Score=22.04 Aligned_cols=59 Identities=10% Similarity=-0.087 Sum_probs=36.7
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcHHHHHHHHHHHH
Q 021689 228 VRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSI 290 (309)
Q Consensus 228 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~ 290 (309)
|..-..-.+.+.++-|+..+++.. ......+.+.+..+++.++|.=+-+..+.+...+.
T Consensus 28 piflslt~~~s~~~r~~ia~~a~l----~a~~ill~f~~~G~~iL~~fGIsl~afrIaGGiiL 86 (214)
T PRK11111 28 PVFISMTSHQTAAERNKTNLTANL----SVAIILLISLFLGDFILNLFGISIDSFRIAGGILV 86 (214)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 444444444566666666666554 34445556677889999999766665666555444
No 60
>TIGR00765 yihY_not_rbn YihY family protein (not ribonuclease BN). Members of this subfamily include the largely uncharacterized BrkB (Bordetella resist killing by serum B) from Bordetella pertussis. Some members have an additional C-terminal domain. Paralogs from E. coli (yhjD) and Mycobactrium tuberculosis (Rv3335c) are part of a smaller, related subfamily that form their own cluster.
Probab=28.58 E-value=3.3e+02 Score=22.37 Aligned_cols=11 Identities=0% Similarity=-0.061 Sum_probs=5.1
Q ss_pred HhhhhhCCCch
Q 021689 8 LCGQAFGAGSI 18 (309)
Q Consensus 8 ~~s~~~g~~~~ 18 (309)
...+.++.+++
T Consensus 106 ~ln~i~~~~~~ 116 (259)
T TIGR00765 106 TLNKIWRVKPR 116 (259)
T ss_pred HHHHHhCCCCC
Confidence 34445554443
No 61
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=27.80 E-value=2.9e+02 Score=21.42 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=18.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhc
Q 021689 121 GLIGAAITLNLSWWLIVILQLLYIFIT 147 (309)
Q Consensus 121 g~~g~~la~~i~~~~~~~~~~~~~~~~ 147 (309)
++.|...++.++.++.+++...+..+.
T Consensus 135 ~~s~s~~~~ti~yIiL~iLf~~Ya~nl 161 (189)
T PF05313_consen 135 SVSGSSGAYTISYIILAILFCIYAFNL 161 (189)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHheeec
Confidence 344666777778877777766666654
No 62
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=25.98 E-value=3.4e+02 Score=21.54 Aligned_cols=54 Identities=15% Similarity=0.067 Sum_probs=31.8
Q ss_pred hHhhhhhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhcCCChHHHHHH
Q 021689 7 TLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETAEISNAA 63 (309)
Q Consensus 7 ~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~ 63 (309)
|.....-+..++++.++..++.....++..+ ...+..+.+++.|+-+-+..+.+
T Consensus 22 p~f~~lt~~~~~~~r~~ia~~a~~~a~~ill---~f~~~G~~iL~~fgIsl~af~Ia 75 (203)
T PF01914_consen 22 PIFLSLTKGMSPKERRRIARRASIIAFIILL---IFAFFGQLILNFFGISLPAFRIA 75 (203)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhCCCHHHHHHH
Confidence 4444444455556666666666555544433 35566789999998776544443
No 63
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=24.08 E-value=1.1e+02 Score=15.23 Aligned_cols=20 Identities=15% Similarity=-0.200 Sum_probs=14.7
Q ss_pred hhcCCChHHHHHHHHHHHHH
Q 021689 233 ELGAGNARAAKFSVLVVSIT 252 (309)
Q Consensus 233 ~~g~~~~~~~~~~~~~~~~~ 252 (309)
.+..|+++++++..++++.+
T Consensus 11 ~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 11 YYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHTT-HHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHH
Confidence 34568999999999988754
No 64
>PRK10739 putative antibiotic transporter; Provisional
Probab=22.45 E-value=3.9e+02 Score=21.09 Aligned_cols=59 Identities=5% Similarity=0.009 Sum_probs=38.6
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcHHHHHHHHHHHH
Q 021689 228 VRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSI 290 (309)
Q Consensus 228 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~ 290 (309)
|..-..-.+.++++-|+..++... +.....+.+.+..+.+.++|.-+.+..+.+...+.
T Consensus 22 piflslt~~~~~~~r~~ia~~a~~----~a~~ill~f~~~G~~iL~~fGIsl~afrIAGGilL 80 (197)
T PRK10739 22 PIFMSVLKHLEPKRRRAIMIRELL----IALLVMLVFLFAGEKILAFLNLRTETVSISGGIIL 80 (197)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 555555555667776777666654 44455557777889999999877666666655443
No 65
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=21.57 E-value=7.5e+02 Score=23.99 Aligned_cols=110 Identities=14% Similarity=-0.069 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCccCCCCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHH
Q 021689 128 TLNLSWWLIVILQLLYIFITKSDGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISV 207 (309)
Q Consensus 128 a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (309)
+..+..+-.....+.--.||++|....-.+.+.+++..+.+..+--.++.+........+..-+.--+-.+.++++.+-.
T Consensus 527 a~~m~aVg~aA~~mV~EvRrQFre~pgi~eg~~~pdy~~cV~I~T~~alkemi~P~ll~v~~Pi~vg~~~g~~al~G~L~ 606 (682)
T PF03030_consen 527 ALTMKAVGRAAGKMVEEVRRQFREIPGIMEGKAKPDYARCVDISTRAALKEMILPGLLAVLAPIVVGFLLGPEALGGLLM 606 (682)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTTTTTSS---HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 021689 208 CMNIQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVV 249 (309)
Q Consensus 208 ~~~i~~~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~~~~~ 249 (309)
...+..+...+..+-+. +-.|++||++...
T Consensus 607 g~~~sG~~~Ai~m~n~G------------GAWDNAKKyIE~g 636 (682)
T PF03030_consen 607 GATVSGILLAIFMANAG------------GAWDNAKKYIEQG 636 (682)
T ss_dssp HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhccc------------hHHHHHHHHHhcc
No 66
>KOG2639 consensus Sodium sulfate symporter and related arsenite permeases [Inorganic ion transport and metabolism]
Probab=20.76 E-value=7.1e+02 Score=23.42 Aligned_cols=17 Identities=12% Similarity=0.096 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHH
Q 021689 164 LWAFVKLSLASAVMLCL 180 (309)
Q Consensus 164 ~~~~~~~~~p~~~~~~~ 180 (309)
+.+++|+|+|+++....
T Consensus 653 F~~fF~~GfPmml~si~ 669 (685)
T KOG2639|consen 653 FTQFFKVGFPMMLGSIT 669 (685)
T ss_pred ehhHHHhcccHHHHHHH
Confidence 55679999998886544
No 67
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=20.61 E-value=4.4e+02 Score=20.89 Aligned_cols=54 Identities=11% Similarity=0.044 Sum_probs=31.3
Q ss_pred hhHhhhhhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhcCCChHHHHH
Q 021689 6 ETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETAEISNA 62 (309)
Q Consensus 6 ~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~ 62 (309)
.|.....-+..++++.++..++.....+...+ .+.+..+.+++.|+-+-+..+.
T Consensus 24 ipvfl~lt~~~~~~~r~~ia~~~~l~a~~ill---~f~~~G~~iL~~fgIsl~afrI 77 (201)
T TIGR00427 24 IPIFISLTEYYTAAERNKIAKKANISSFIILL---IFLVFGDTILKLFGISIDAFRI 77 (201)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhCCCHHHHHH
Confidence 34444444455566666666655554444333 3556678888988877554443
No 68
>COG4920 Predicted membrane protein [Function unknown]
Probab=20.59 E-value=4e+02 Score=21.22 Aligned_cols=56 Identities=9% Similarity=-0.075 Sum_probs=30.7
Q ss_pred hcCCChHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcccccccc---CcHHHHHHHHHHH
Q 021689 234 LGAGNARAAKFSVLVVS--ITAVTIGVCCTILVLATRYNFPFLFT---NSEAVAAETTKLS 289 (309)
Q Consensus 234 ~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~---~~~~~~~~~~~~l 289 (309)
+-++|.+..+++-+... ...+.++++..+++..+-++....+. .++++.......+
T Consensus 81 L~~kDee~l~E~~~~~~~~f~~m~~ml~yfIll~~f~~p~~~~~a~n~~~~~~l~~f~~Fl 141 (249)
T COG4920 81 LLEKDEELLNEYKRFARASFMPMLTMLPYFILLATFLFPTLPPLAENGLGPVVLREFARFL 141 (249)
T ss_pred HHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcchHHHHHcCCChHHHHHHHHHH
Confidence 34466666655544332 34456667777777777676666652 3455544443333
No 69
>PRK10995 inner membrane protein; Provisional
Probab=20.51 E-value=4.6e+02 Score=21.08 Aligned_cols=54 Identities=13% Similarity=-0.049 Sum_probs=31.6
Q ss_pred hhHhhhhhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhcCCChHHHHH
Q 021689 6 ETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETAEISNA 62 (309)
Q Consensus 6 ~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~ 62 (309)
.|..-..-...++++.++..++.....+...+. ..+..+.+++.++-+.+..+.
T Consensus 25 ~pif~~lt~~~~~~~r~~ia~~~~~~a~~ill~---f~~~G~~il~~fgIs~~a~rI 78 (221)
T PRK10995 25 VALFLGLSGNMTPEERNRQALMASVYVFAIMMV---AFYAGQLVMSTFGISIPGLRI 78 (221)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCCCHHHHHH
Confidence 344444444556666666666665555544433 455578888888876554443
Done!