Query 021689
Match_columns 309
No_of_seqs 176 out of 1877
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 07:51:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021689.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021689hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 9.6E-38 3.3E-42 278.7 23.3 305 2-308 68-379 (460)
2 3mkt_A Multi antimicrobial ext 99.6 2.4E-15 8.3E-20 133.7 13.9 146 2-147 294-446 (460)
3 2k1k_A Ephrin type-A receptor 45.8 29 0.00098 18.3 3.2 22 122-143 13-34 (38)
4 2ks1_B Epidermal growth factor 26.7 85 0.0029 17.2 4.4 9 138-146 29-37 (44)
5 2jwa_A Receptor tyrosine-prote 20.0 1.2E+02 0.0042 16.6 4.3 7 141-147 32-38 (44)
6 3hd7_B Syntaxin-1A; membrane p 11.8 1.9E+02 0.0066 19.2 3.0 22 237-258 70-91 (109)
7 4hkr_A Calcium release-activat 10.0 5.8E+02 0.02 19.3 13.5 98 200-298 58-164 (214)
8 4a01_A Proton pyrophosphatase; 9.8 1E+03 0.035 22.1 9.1 26 199-224 662-687 (766)
9 2knc_B Integrin beta-3; transm 9.1 1.3E+02 0.0045 18.8 1.3 20 121-140 9-28 (79)
10 2jek_A RV1873; structural geno 8.7 5.5E+02 0.019 18.1 6.0 91 9-100 53-143 (145)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=9.6e-38 Score=278.72 Aligned_cols=305 Identities=20% Similarity=0.318 Sum_probs=279.6
Q ss_pred cchhhhHhhhhhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhcCCChHHHHHHHHHHHHHHhHHHHHHHHH
Q 021689 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALNF 81 (309)
Q Consensus 2 ~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 81 (309)
+.+..+.++|++|++|+|+.++..++++.+..+.+++.+++..+.+|++.+++.+++..+.+..|++++.++.++..+..
T Consensus 68 ~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~ 147 (460)
T 3mkt_A 68 LMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQ 147 (460)
T ss_dssp HHHHGGGCTTTTSSSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999887777788899999999999999999999999999999999999
Q ss_pred HHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHh-h---cCchhhHHHHHHHHHHHHHHHHHHHHHhcccCcc---CC
Q 021689 82 PIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILK-L---GWGLIGAAITLNLSWWLIVILQLLYIFITKSDGA---WS 154 (309)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lli~~-~---~~g~~g~~la~~i~~~~~~~~~~~~~~~~~~~~~---~~ 154 (309)
.+++++|+.||++.++..++++.++|+++++++++. + ++|+.|+++++.+++.+..++..++.++++...+ ++
T Consensus 148 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (460)
T 3mkt_A 148 ALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFE 227 (460)
T ss_dssp HHTTTTCTTSCCTTTHHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSC
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhh
Confidence 999999999999999999999999999999999975 3 6999999999999999999998888876632211 12
Q ss_pred CCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021689 155 GFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNEL 234 (309)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~ 234 (309)
++.+.+++.+|++++.++|..++...+...+.+++.+++.+| +.++++|+++.++.++...+..+++++..|.+++++
T Consensus 228 ~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~ 305 (460)
T 3mkt_A 228 TFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKL 305 (460)
T ss_dssp CCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233445678999999999999999999999999999999997 678999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Q 021689 235 GAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGN 308 (309)
Q Consensus 235 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 308 (309)
|+||+|++|+..+++.+++..++++.++++.++++++.++|++|+|+.+.+.++++++++..++++++.+..+.
T Consensus 306 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 379 (460)
T 3mkt_A 306 GEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGS 379 (460)
T ss_dssp HSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998999999999999999999999877654
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.63 E-value=2.4e-15 Score=133.75 Aligned_cols=146 Identities=13% Similarity=0.150 Sum_probs=134.5
Q ss_pred cchhhhHhhhhhCCCchhhHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhcCCChHHHHHHHHHHHHHHhHHHHHHHH
Q 021689 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSP-LYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALN 80 (309)
Q Consensus 2 ~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 80 (309)
+.+..|.++|++|++|+|+.++..+.+.......+++.++ +..+.+++.+++.+|++..+.+..++++.+++.++.++.
T Consensus 294 ~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 373 (460)
T 3mkt_A 294 GAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQ 373 (460)
T ss_dssp HHHHHHHHHHHHHSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999877 789999999999888888899999999999999999999
Q ss_pred HHHHHHHHHccchhHHHHHHHHHH-HHHHHHHHHHHHh----hc-CchhhHHHHHHHHHHHHHHHHHHHHHhc
Q 021689 81 FPIQKFLQAQRKVLVMAWISAIVL-VLHALFSWLLILK----LG-WGLIGAAITLNLSWWLIVILQLLYIFIT 147 (309)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~lli~~----~~-~g~~g~~la~~i~~~~~~~~~~~~~~~~ 147 (309)
....+.+++.||++.+++.++.+. ++++++++++... .+ +|+.|+++++.+++.+..+...+..+|+
T Consensus 374 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~ 446 (460)
T 3mkt_A 374 VVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL 446 (460)
T ss_dssp HHHHHHHGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998 9999999999885 45 9999999999999999988876665544
No 3
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=45.82 E-value=29 Score=18.34 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=10.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 021689 122 LIGAAITLNLSWWLIVILQLLY 143 (309)
Q Consensus 122 ~~g~~la~~i~~~~~~~~~~~~ 143 (309)
+.|..++.+.+..+.....+++
T Consensus 13 IAGiVvG~v~gv~li~~l~~~~ 34 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGILVFR 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHHHHHHHHH
Confidence 4455555555554444444333
No 4
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=26.70 E-value=85 Score=17.16 Aligned_cols=9 Identities=11% Similarity=-0.068 Sum_probs=3.5
Q ss_pred HHHHHHHHh
Q 021689 138 ILQLLYIFI 146 (309)
Q Consensus 138 ~~~~~~~~~ 146 (309)
+..+++.++
T Consensus 29 ~~~~~~~RR 37 (44)
T 2ks1_B 29 LGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhhh
Confidence 333344443
No 5
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=20.04 E-value=1.2e+02 Score=16.55 Aligned_cols=7 Identities=14% Similarity=-0.164 Sum_probs=3.0
Q ss_pred HHHHHhc
Q 021689 141 LLYIFIT 147 (309)
Q Consensus 141 ~~~~~~~ 147 (309)
..+.+|+
T Consensus 32 ~~~~RRR 38 (44)
T 2jwa_A 32 GILIKRR 38 (44)
T ss_dssp HHHHHHH
T ss_pred Hhheehh
Confidence 3444444
No 6
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=11.82 E-value=1.9e+02 Score=19.21 Aligned_cols=22 Identities=9% Similarity=-0.028 Sum_probs=11.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHH
Q 021689 237 GNARAAKFSVLVVSITAVTIGV 258 (309)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~ 258 (309)
++.++++++-+++.+...++.+
T Consensus 70 ~eL~kA~~yqk~~rkk~~i~l~ 91 (109)
T 3hd7_B 70 SDTKKAVKYQSKARRKKIMIII 91 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcceehHH
Confidence 4455555555555555444443
No 7
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=10.04 E-value=5.8e+02 Score=19.32 Aligned_cols=98 Identities=12% Similarity=0.095 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 021689 200 IAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNE--------LGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNF 271 (309)
Q Consensus 200 ~~~~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 271 (309)
.-+.+|++...+.-...++..-+++-..|.+... ..+.-.++.+.++...-.++.++++++.+.-....-|
T Consensus 58 ~LLi~fav~Ttllv~vml~AlMIsTcILPnIeav~~~h~~~~v~esPH~r~~~yIE~AW~fST~lGi~LFL~evall~W- 136 (214)
T 4hkr_A 58 GMLIAFAICTTLLVAVHMLALMISTCILPNIETVSNLHSISLVHESPHERLHWYIETAWAFSTLLGLILFLLEIAILCW- 136 (214)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHTTTC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhe-
Confidence 3466888888888777777777777666655433 2234578888888888888888877777666665444
Q ss_pred cccccC-cHHHHHHHHHHHHHHHHHHHh
Q 021689 272 PFLFTN-SEAVAAETTKLSILLAITVLM 298 (309)
Q Consensus 272 ~~l~~~-~~~~~~~~~~~l~~~~~~~~~ 298 (309)
.+++.. .+.....+.-+.|...++..|
T Consensus 137 VKF~~~~~~aa~~~t~vliPv~i~F~~F 164 (214)
T 4hkr_A 137 VKFYDLSRRAAWSATVVLIPVMIIFMAF 164 (214)
T ss_dssp HHHTTTCHHHHHHHHHHTHHHHHHHHHH
T ss_pred EEeecCCcHHHHHHHHHHHHHHHHHHHH
Confidence 444543 333333344445555544444
No 8
>4a01_A Proton pyrophosphatase; hydrolase, membrane protein, proton pumping; HET: DMU; 2.35A {Vigna radiata}
Probab=9.80 E-value=1e+03 Score=22.11 Aligned_cols=26 Identities=8% Similarity=0.086 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021689 199 LIAVDAISVCMNIQGWDAMIAIGFNA 224 (309)
Q Consensus 199 ~~~~~~~~~~~~i~~~~~~~~~~~~~ 224 (309)
.++++.+-....+..+...+..+-+.
T Consensus 662 ~~al~G~L~G~~vsGv~~Ai~maNaG 687 (766)
T 4a01_A 662 VETLSGVLAGSLVSGVQIAISASNTG 687 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 56677777777666666655544333
No 9
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=9.13 E-value=1.3e+02 Score=18.79 Aligned_cols=20 Identities=10% Similarity=0.094 Sum_probs=9.3
Q ss_pred chhhHHHHHHHHHHHHHHHH
Q 021689 121 GLIGAAITLNLSWWLIVILQ 140 (309)
Q Consensus 121 g~~g~~la~~i~~~~~~~~~ 140 (309)
.+.++..+.+.+-++..++.
T Consensus 9 n~~~Iv~gvi~gilliGlll 28 (79)
T 2knc_B 9 DILVVLLSVMGAILLIGLAA 28 (79)
T ss_dssp CSHHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHH
Confidence 34445555555544444433
No 10
>2jek_A RV1873; structural genomics, unknown function, hypothetical protein, right-handed superhelix, TB structural genomics consortium; 1.38A {Mycobacterium tuberculosis} SCOP: a.255.1.1
Probab=8.71 E-value=5.5e+02 Score=18.14 Aligned_cols=91 Identities=12% Similarity=0.137 Sum_probs=0.0
Q ss_pred hhhhhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 021689 9 CGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALNFPIQKFLQ 88 (309)
Q Consensus 9 ~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~ 88 (309)
.+|++|-++.++++.++..-+.-.=+.-+.-.+.-.-....-..||. ++....-+.+...-...---..+..++..++.
T Consensus 53 ~A~~YgI~sl~EA~AYL~hpvLg~RL~e~~~~ll~~~~~sa~~IfG~-~D~~KlrSsMTLFa~a~~~~~~F~~vL~~~f~ 131 (145)
T 2jek_A 53 LAVRYGISSLEEAQAYLQHDLLGPRLHECTGLVNQVQGRSIEEIFGP-PDDLKLCSSMTLFARATDANQDFVALLAKYYG 131 (145)
T ss_dssp HHHHTSBCSHHHHHHHHHSTTHHHHHHHHHHHHHHCCSCCHHHHSCT-THHHHHHHHHHHHHHHCSCCHHHHHHHHHHST
T ss_pred hhhHhccCCHHHHHHHHcChHHHHHHHHHHHHHHhccCCCHHHHcCC-hhHHHHHhHHHHHHHcCCCchHHHHHHHHHcC
Q ss_pred HccchhHHHHHH
Q 021689 89 AQRKVLVMAWIS 100 (309)
Q Consensus 89 ~~~~~~~~~~~~ 100 (309)
|..+.+..-..+
T Consensus 132 G~~D~~Tl~~L~ 143 (145)
T 2jek_A 132 GGEDRRTVALLA 143 (145)
T ss_dssp TCCCHHHHHHHH
T ss_pred CCCCHHHHHHhc
Done!