Query 021689
Match_columns 309
No_of_seqs 176 out of 1877
Neff 10.6
Searched_HMMs 13730
Date Mon Mar 25 07:51:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021689.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021689hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nkzb_ f.3.1.1 (B:) Light-har 11.2 1E+02 0.0073 15.1 4.7 34 238-271 7-40 (41)
2 d2fyuk1 f.23.15.1 (K:1-53) Sub 8.9 1.5E+02 0.011 15.5 3.1 29 9-37 2-30 (53)
3 d1fftb2 f.17.2.1 (B:27-117) Cy 6.4 64 0.0047 19.2 0.5 17 164-180 61-77 (91)
4 d3dtub2 f.17.2.1 (B:30-129) Ba 6.0 2.9E+02 0.021 16.2 9.0 18 164-181 70-87 (100)
5 d2o3fa1 a.4.1.20 (A:1-83) Puta 5.1 2.6E+02 0.019 15.9 2.8 30 221-250 47-76 (83)
6 d2jeka1 a.255.1.1 (A:6-145) Hy 4.8 4.3E+02 0.031 16.9 5.4 91 7-98 46-136 (140)
7 d1ijdb_ f.3.1.1 (B:) Light-har 4.7 2.3E+02 0.017 13.6 4.6 32 238-269 8-39 (40)
8 d1su0b_ d.224.1.2 (B:) IscU ho 4.3 4.5E+02 0.033 16.3 4.9 31 221-251 61-91 (136)
9 d1m56d_ f.23.8.1 (D:) Bacteria 4.1 2.7E+02 0.02 13.6 4.1 26 234-259 4-29 (42)
10 d1u61a_ a.149.1.1 (A:) Hypothe 4.1 4.6E+02 0.033 16.1 4.7 30 222-251 94-123 (127)
No 1
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=11.15 E-value=1e+02 Score=15.05 Aligned_cols=34 Identities=6% Similarity=0.033 Sum_probs=25.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 021689 238 NARAAKFSVLVVSITAVTIGVCCTILVLATRYNF 271 (309)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 271 (309)
+-|++.++.-..-++-..+.+..=++.+...+|+
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCccc
Confidence 3577888888888888888887777777776654
No 2
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.95 E-value=1.5e+02 Score=15.53 Aligned_cols=29 Identities=3% Similarity=0.010 Sum_probs=19.7
Q ss_pred hhhhhCCCchhhHHHHHHHHHHHHHHHHH
Q 021689 9 CGQAFGAGSIRMLGVYMQRSWVILLITSC 37 (309)
Q Consensus 9 ~s~~~g~~~~~~~~~~~~~~~~~~~~~~i 37 (309)
.++.+|++..+.++....+........++
T Consensus 2 l~k~iG~k~~~ia~~wips~~~~G~a~gl 30 (53)
T d2fyuk1 2 LTRFLGPRYRQLARNWVPTASLWGAVGAV 30 (53)
T ss_dssp GGGGCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHhhhhhhhhhhhhe
Confidence 56778888777777777776665555443
No 3
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=6.44 E-value=64 Score=19.18 Aligned_cols=17 Identities=12% Similarity=0.124 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHH
Q 021689 164 LWAFVKLSLASAVMLCL 180 (309)
Q Consensus 164 ~~~~~~~~~p~~~~~~~ 180 (309)
..|+....+|..+....
T Consensus 61 ~lEi~WtiIP~iil~~i 77 (91)
T d1fftb2 61 KVEAVVWTVPILIIIFL 77 (91)
T ss_dssp HHHHHTTHHHHHHHHHH
T ss_pred eehhhHHHHHHHHHHHH
Confidence 45778888997764443
No 4
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.96 E-value=2.9e+02 Score=16.23 Aligned_cols=18 Identities=0% Similarity=0.041 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 021689 164 LWAFVKLSLASAVMLCLE 181 (309)
Q Consensus 164 ~~~~~~~~~p~~~~~~~~ 181 (309)
.-|+....+|..+.....
T Consensus 70 ~LEiiWTviP~lILi~l~ 87 (100)
T d3dtub2 70 PLEIAWTIVPIVILVAIG 87 (100)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 567889999977654443
No 5
>d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]}
Probab=5.10 E-value=2.6e+02 Score=15.87 Aligned_cols=30 Identities=20% Similarity=0.162 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 021689 221 GFNAAISVRVSNELGAGNARAAKFSVLVVS 250 (309)
Q Consensus 221 ~~~~a~~~~~~~~~g~~~~~~~~~~~~~~~ 250 (309)
+.+.+...+..+.+|=+++.+.|..++..+
T Consensus 47 ~vS~sTi~Rf~kklG~~gf~e~k~~l~~el 76 (83)
T d2o3fa1 47 NSSDAAVIRLCKSLGLKGFQDLKMRVAGDL 76 (83)
T ss_dssp TCCHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 456677789999999999999998776653
No 6
>d2jeka1 a.255.1.1 (A:6-145) Hypothetical protein Rv1873 (MT1922) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=4.84 E-value=4.3e+02 Score=16.91 Aligned_cols=91 Identities=11% Similarity=0.102 Sum_probs=49.0
Q ss_pred hHhhhhhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 021689 7 TLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALNFPIQKF 86 (309)
Q Consensus 7 ~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ 86 (309)
+-.++++|-++.++++.++..=+.-.=..-+.-.+.-.-....-..||..++..-.+..-+.-.... --..+..++..+
T Consensus 46 S~~a~~YaI~sl~EA~AYL~HPvLG~RL~ec~~~ll~~~~~s~~~IfG~~D~lKlrSsmTLF~~a~~-~~~~F~~~L~~~ 124 (140)
T d2jeka1 46 SPLAVRYGISSLEEAQAYLQHDLLGPRLHECTGLVNQVQGRSIEEIFGPPDDLKLCSSMTLFARATD-ANQDFVALLAKY 124 (140)
T ss_dssp SHHHHHTSBCSHHHHHHHHHSTTHHHHHHHHHHHHHHCCSCCHHHHSCTTHHHHHHHHHHHHHHHCS-CCHHHHHHHHHH
T ss_pred CHHHHHhccCCHHHHHHHHhChHhHHHHHHHHHHHHHccCCCHHHHCCChhHHHHHhHHHHHHHhCC-CchHHHHHHHHH
Confidence 3478999999999999998875433322222222233334455666766443322222112111111 012456677788
Q ss_pred HHHccchhHHHH
Q 021689 87 LQAQRKVLVMAW 98 (309)
Q Consensus 87 l~~~~~~~~~~~ 98 (309)
+.|..+.+..-.
T Consensus 125 f~G~~d~~Tl~~ 136 (140)
T d2jeka1 125 YGGGEDRRTVAL 136 (140)
T ss_dssp STTCCCHHHHHH
T ss_pred hCCCCCHHHHHH
Confidence 888877765543
No 7
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=4.70 E-value=2.3e+02 Score=13.60 Aligned_cols=32 Identities=13% Similarity=0.052 Sum_probs=22.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021689 238 NARAAKFSVLVVSITAVTIGVCCTILVLATRY 269 (309)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (309)
+-+++.++.-..-++-..+.+..=++.+...+
T Consensus 8 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tP 39 (40)
T d1ijdb_ 8 QAEELHKHVIDGTRVFLVIAAIAHFLAFTLTP 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhcCC
Confidence 45777888888888777777776666655544
No 8
>d1su0b_ d.224.1.2 (B:) IscU homolog SPy0289 {Streptococcus pyogenes [TaxId: 1314]}
Probab=4.26 E-value=4.5e+02 Score=16.32 Aligned_cols=31 Identities=13% Similarity=-0.007 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 021689 221 GFNAAISVRVSNELGAGNARAAKFSVLVVSI 251 (309)
Q Consensus 221 ~~~~a~~~~~~~~~g~~~~~~~~~~~~~~~~ 251 (309)
++++|...++++..-.++.+++++.......
T Consensus 61 ai~~ASasil~e~i~gk~~~e~~~l~~~~~~ 91 (136)
T d1su0b_ 61 TISTASSSMMTDAVIGKSKEEALALADIFSE 91 (136)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5677888888888888889998887665543
No 9
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.13 E-value=2.7e+02 Score=13.62 Aligned_cols=26 Identities=8% Similarity=-0.066 Sum_probs=12.8
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHH
Q 021689 234 LGAGNARAAKFSVLVVSITAVTIGVC 259 (309)
Q Consensus 234 ~g~~~~~~~~~~~~~~~~~~~~~~~~ 259 (309)
.|+-|.+.-.+...--++++.-..+.
T Consensus 4 HG~MDi~vQEKTF~gFik~~t~~~i~ 29 (42)
T d1m56d_ 4 AGSMDITQQEKTFAGFVRMVTWAAVV 29 (42)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555554444333
No 10
>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]}
Probab=4.06 E-value=4.6e+02 Score=16.13 Aligned_cols=30 Identities=10% Similarity=-0.063 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 021689 222 FNAAISVRVSNELGAGNARAAKFSVLVVSI 251 (309)
Q Consensus 222 ~~~a~~~~~~~~~g~~~~~~~~~~~~~~~~ 251 (309)
.+++....++..+=.++++++++....++.
T Consensus 94 lad~fEAliGalYLd~~~e~~~~~i~~~~~ 123 (127)
T d1u61a_ 94 HSTAFEALIGYHHLLNNRERLDEIVYKAIA 123 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 568888899988877889999998887654
Done!