BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021691
(309 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BZB|A Chain A, Crystal Structure Of Uncharacterized Protein Cmq451c From
The Primitive Red Alga Cyanidioschyzon Merolae
pdb|3BZB|B Chain B, Crystal Structure Of Uncharacterized Protein Cmq451c From
The Primitive Red Alga Cyanidioschyzon Merolae
Length = 281
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 116 WPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISD-GNPQVVDYI 174
W LA ++ K V ELG+G GL ++A A +VV +D +P++++ +
Sbjct: 61 WSGARALADTLCWQPELIAGKTVCELGAGAGLVS-IVAFLAGADQVVATDYPDPEILNSL 119
Query: 175 QRNV-DANSGAFGGTTVKSMT---LHWNQDDFP------YIVDTFDVIVASDCTFFKEFH 224
+ N+ + + + TVK + + + D P + F V++ +D F + H
Sbjct: 120 ESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAH 179
Query: 225 KDLARIIKFLL 235
L R +K LL
Sbjct: 180 DALLRSVKXLL 190
>pdb|3G88|A Chain A, T. Thermophilus 16s Rrna G527 Methyltransferase In Complex
With Adomet In Space Group P61
pdb|3G88|B Chain B, T. Thermophilus 16s Rrna G527 Methyltransferase In Complex
With Adomet In Space Group P61
pdb|3G89|A Chain A, T. Thermophilus 16s Rrna G527 Methyltransferase In Complex
With Adomet And Amp In Space Group P61
pdb|3G89|B Chain B, T. Thermophilus 16s Rrna G527 Methyltransferase In Complex
With Adomet And Amp In Space Group P61
pdb|3G8A|A Chain A, T. Thermophilus 16s Rrna G527 Methyltransferase In Complex
With Adohcy In Space Group P61
pdb|3G8A|B Chain B, T. Thermophilus 16s Rrna G527 Methyltransferase In Complex
With Adohcy In Space Group P61
pdb|3G8A|C Chain C, T. Thermophilus 16s Rrna G527 Methyltransferase In Complex
With Adohcy In Space Group P61
pdb|3G8A|D Chain D, T. Thermophilus 16s Rrna G527 Methyltransferase In Complex
With Adohcy In Space Group P61
pdb|3G8A|E Chain E, T. Thermophilus 16s Rrna G527 Methyltransferase In Complex
With Adohcy In Space Group P61
pdb|3G8A|F Chain F, T. Thermophilus 16s Rrna G527 Methyltransferase In Complex
With Adohcy In Space Group P61
pdb|3G8B|A Chain A, T. Thermophilus 16s Rrna G527 Methyltransferase In Complex
With Adomet In Space Group I222
pdb|3G8B|B Chain B, T. Thermophilus 16s Rrna G527 Methyltransferase In Complex
With Adomet In Space Group I222
Length = 249
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 137 RVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVD 179
RV++LG+G G GL + LE+V+ D + V +++R ++
Sbjct: 83 RVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIE 125
>pdb|4DCM|A Chain A, Crystal Structure Of Methyltransferase Rlmg Modifying
G1835 Of 23s Rrna In Escherichia Coli
Length = 375
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 8/85 (9%)
Query: 98 DFEICNRCNI-DNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATT 156
D+ I N N+ TGL D+ A F H +++LG G G+ GL +
Sbjct: 192 DWTIHNHANVFSRTGL-------DIGARFFXQHLPENLEGEIVDLGCGNGVIGLTLLDKN 244
Query: 157 EALEVVISDGNPQVVDYIQRNVDAN 181
+VV D +P V + NV+ N
Sbjct: 245 PQAKVVFVDESPXAVASSRLNVETN 269
>pdb|2ZUL|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533) In Complex With
Cofactor S-Adenosyl-L-Methionine
pdb|2ZWV|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533)
Length = 375
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSM 193
R ++V++LG+GYG L + EVV + + V +Q+ ++AN+ +K+
Sbjct: 233 RGRQVLDLGAGYG--ALTLPLARMGAEVVGVEDDLASVLSLQKGLEANA-------LKAQ 283
Query: 194 TLHWNQDDFPYIVDTFDVIV 213
LH + D+ FD+IV
Sbjct: 284 ALHSDVDEALTEEARFDIIV 303
>pdb|3DMF|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet
pdb|3DMG|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adohcy
pdb|3DMH|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet And Guanosine
Length = 381
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSM 193
R ++V++LG+GYG L + EVV + + V +Q+ ++AN+ +K+
Sbjct: 233 RGRQVLDLGAGYG--ALTLPLARMGAEVVGVEDDLASVLSLQKGLEANA-------LKAQ 283
Query: 194 TLHWNQDDFPYIVDTFDVIV 213
LH + D+ FD+IV
Sbjct: 284 ALHSDVDEALTEEARFDIIV 303
>pdb|1T43|A Chain A, Crystal Structure Analysis Of E.Coli Protein
(N5)-Glutamine Methyltransferase (Hemk)
Length = 277
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 137 RVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNV 178
R+++LG+G G L +A+ E++ D P V QRN
Sbjct: 112 RILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNA 153
>pdb|2B3T|A Chain A, Molecular Basis For Bacterial Class 1 Release Factor
Methylation By Prmc
Length = 276
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 137 RVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNV 178
R+++LG+G G L +A+ E++ D P V QRN
Sbjct: 112 RILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNA 153
>pdb|2O0H|A Chain A, T4 Gp17 Atpase Domain Mutant Complexed With Atp
pdb|2O0J|A Chain A, T4 Gp17 Atpase Domain Mutant Complexed With Adp
pdb|2O0K|A Chain A, T4 Gp17 Atpase Domain Mutant
Length = 385
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 14/107 (13%)
Query: 121 VLAFFSLSHADMFRSKRVIELGSGYG-LAGLVIAATTEALEVVISDGNPQVVDYIQRNVD 179
V+A F L+H F + + + + G ++ V+ T +A+E++ P +V++ + +++
Sbjct: 194 VVAIF-LAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIE 252
Query: 180 ANSGAFGGTTVKSMTLHWNQDDFPYIV--DTFDVIVASDCTFFKEFH 224
++G+ G S P V ++F +I DC F FH
Sbjct: 253 LDNGSSIGAYASS----------PDAVRGNSFAMIYIEDCAFIPNFH 289
>pdb|3CPE|A Chain A, Crystal Structure Of T4 Gp17
Length = 592
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 14/107 (13%)
Query: 121 VLAFFSLSHADMFRSKRVIELGSGYG-LAGLVIAATTEALEVVISDGNPQVVDYIQRNVD 179
V+A F L+H F + + + + G ++ V+ T +A+E++ P +V++ + +++
Sbjct: 194 VVAIF-LAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIE 252
Query: 180 ANSGAFGGTTVKSMTLHWNQDDFPYIV--DTFDVIVASDCTFFKEFH 224
++G+ G S P V ++F +I DC F FH
Sbjct: 253 LDNGSSIGAYASS----------PDAVRGNSFAMIYIEDCAFIPNFH 289
>pdb|1YOE|A Chain A, Crystal Structure Of A The E. Coli Pyrimidine Nucleoside
Hydrolase Ybek With Bound Ribose
Length = 322
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 20/130 (15%)
Query: 104 RCNIDNTGLVCHWPSEDVLAFFSLSHADMF-RSKRVIELGSGYGLAGLVIAAT------T 156
R + + +V P +V A SH ++ + R++ +G GL AA
Sbjct: 124 RESAEPVTIVSTGPQTNV-ALLLNSHPELHSKIARIVIMGGAMGLGNWTPAAEFNIYVDP 182
Query: 157 EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASD 216
EA E+V G P V+ + T K+ + + F I + IVA
Sbjct: 183 EAAEIVFQSGIPVVMAGLD------------VTHKAQIHVEDTERFRAIGNPVSTIVAEL 230
Query: 217 CTFFKEFHKD 226
FF E+HKD
Sbjct: 231 LDFFLEYHKD 240
>pdb|3G5I|A Chain A, Crystal Structure Of The E.Coli Riha Pyrimidine
Nucleosidase Bound To A Iminoribitol-Based Inhibitor
pdb|3G5I|B Chain B, Crystal Structure Of The E.Coli Riha Pyrimidine
Nucleosidase Bound To A Iminoribitol-Based Inhibitor
pdb|3G5I|C Chain C, Crystal Structure Of The E.Coli Riha Pyrimidine
Nucleosidase Bound To A Iminoribitol-Based Inhibitor
pdb|3G5I|D Chain D, Crystal Structure Of The E.Coli Riha Pyrimidine
Nucleosidase Bound To A Iminoribitol-Based Inhibitor
Length = 312
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 20/130 (15%)
Query: 104 RCNIDNTGLVCHWPSEDVLAFFSLSHADMF-RSKRVIELGSGYGLAGLVIAAT------T 156
R + + +V P +V A SH ++ + R++ +G GL AA
Sbjct: 114 RESAEPVTIVSTGPQTNV-ALLLNSHPELHSKIARIVIMGGAMGLGNWTPAAEFNIYVDP 172
Query: 157 EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASD 216
EA E+V G P V+ + T K+ + + F I + IVA
Sbjct: 173 EAAEIVFQSGIPVVMAGLD------------VTHKAQIHVEDTERFRAIGNPVSTIVAEL 220
Query: 217 CTFFKEFHKD 226
FF E+HKD
Sbjct: 221 LDFFLEYHKD 230
>pdb|1ORV|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORW|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|2BUA|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUC|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2AJ8|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJB|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJC|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJD|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
Length = 728
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 253 SLDKFLEEIEGNHLHFSIIENYNAEIWKRHQMLMSGDESWPNYDKDHCYPFLVRI 307
+LDK L++++ +I + + W +QM++ P++DK YP L+ +
Sbjct: 461 ALDKMLQDVQMPSKKLDVINLHGTKFW--YQMILP-----PHFDKSKKYPLLIEV 508
>pdb|1VBF|A Chain A, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|B Chain B, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|C Chain C, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|D Chain D, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
Length = 231
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 122 LAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQR 176
L F L D+ + ++V+E+G+G G +IA + +VV + N + +Y +
Sbjct: 58 LGIFXLDELDLHKGQKVLEIGTGIGYYTALIAEIVD--KVVSVEINEKXYNYASK 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,471,657
Number of Sequences: 62578
Number of extensions: 400534
Number of successful extensions: 919
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 914
Number of HSP's gapped (non-prelim): 18
length of query: 309
length of database: 14,973,337
effective HSP length: 99
effective length of query: 210
effective length of database: 8,778,115
effective search space: 1843404150
effective search space used: 1843404150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)