Query 021691
Match_columns 309
No_of_seqs 368 out of 2077
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 04:56:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021691.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021691hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3201 Uncharacterized conser 100.0 2.6E-42 5.7E-47 276.4 6.9 198 106-308 1-199 (201)
2 PF10294 Methyltransf_16: Puta 99.9 1.2E-27 2.5E-32 201.9 11.4 153 107-264 13-173 (173)
3 COG3897 Predicted methyltransf 99.7 4E-17 8.7E-22 135.9 9.8 135 114-261 59-193 (218)
4 COG4123 Predicted O-methyltran 99.7 7.4E-16 1.6E-20 135.1 13.9 145 118-273 32-194 (248)
5 PF05175 MTS: Methyltransferas 99.7 1.8E-15 4E-20 127.3 15.1 119 117-248 18-141 (170)
6 PF12847 Methyltransf_18: Meth 99.6 1.2E-15 2.7E-20 118.8 10.8 106 134-246 1-110 (112)
7 PLN02244 tocopherol O-methyltr 99.6 1.3E-14 2.8E-19 135.1 18.9 149 120-276 99-281 (340)
8 COG2264 PrmA Ribosomal protein 99.6 7.4E-15 1.6E-19 132.1 15.6 147 107-272 141-287 (300)
9 PF06325 PrmA: Ribosomal prote 99.6 3.8E-15 8.3E-20 135.0 13.6 143 106-271 139-281 (295)
10 TIGR00537 hemK_rel_arch HemK-r 99.6 2E-14 4.2E-19 121.9 16.3 130 132-275 17-167 (179)
11 PF13847 Methyltransf_31: Meth 99.6 1.7E-14 3.7E-19 119.0 13.4 109 134-249 3-112 (152)
12 PRK00107 gidB 16S rRNA methylt 99.6 6E-14 1.3E-18 119.5 16.8 123 134-271 45-167 (187)
13 PLN02233 ubiquinone biosynthes 99.6 8.3E-14 1.8E-18 125.1 18.3 113 131-248 70-183 (261)
14 COG2226 UbiE Methylase involve 99.6 2.1E-14 4.6E-19 125.8 14.0 128 109-250 32-159 (238)
15 COG2227 UbiG 2-polyprenyl-3-me 99.6 4E-15 8.7E-20 128.6 9.2 107 133-250 58-164 (243)
16 TIGR02752 MenG_heptapren 2-hep 99.6 9E-14 1.9E-18 122.4 17.5 109 131-247 42-151 (231)
17 PLN02396 hexaprenyldihydroxybe 99.6 2.3E-14 4.9E-19 131.8 14.0 132 133-273 130-289 (322)
18 KOG2793 Putative N2,N2-dimethy 99.6 2.8E-14 6E-19 125.2 13.3 158 111-273 53-228 (248)
19 TIGR00138 gidB 16S rRNA methyl 99.6 1E-13 2.2E-18 117.7 14.8 126 133-273 41-169 (181)
20 smart00828 PKS_MT Methyltransf 99.6 1.2E-13 2.5E-18 121.2 15.5 133 136-276 1-147 (224)
21 COG2230 Cfa Cyclopropane fatty 99.6 1.3E-13 2.8E-18 123.1 15.2 149 117-276 55-226 (283)
22 PRK08287 cobalt-precorrin-6Y C 99.6 2.8E-13 6.1E-18 115.6 16.8 133 126-272 23-155 (187)
23 PRK15068 tRNA mo(5)U34 methylt 99.5 2.3E-13 5E-18 125.7 17.3 149 115-273 104-274 (322)
24 PTZ00098 phosphoethanolamine N 99.5 2.1E-13 4.6E-18 122.6 16.6 143 120-273 38-202 (263)
25 PF01209 Ubie_methyltran: ubiE 99.5 3.7E-14 8E-19 125.0 11.4 126 111-250 30-156 (233)
26 PRK11036 putative S-adenosyl-L 99.5 1.2E-13 2.5E-18 123.8 14.8 129 134-270 44-204 (255)
27 PRK14967 putative methyltransf 99.5 7.6E-13 1.6E-17 116.1 19.4 142 119-273 22-184 (223)
28 PRK11207 tellurite resistance 99.5 2.6E-13 5.5E-18 116.9 16.1 99 132-239 28-128 (197)
29 PRK15001 SAM-dependent 23S rib 99.5 1.5E-13 3.3E-18 128.6 15.5 119 123-247 217-340 (378)
30 PLN02336 phosphoethanolamine N 99.5 3.7E-13 8.1E-18 130.9 18.8 152 115-276 247-417 (475)
31 PF02353 CMAS: Mycolic acid cy 99.5 2.2E-13 4.8E-18 122.7 14.9 148 117-275 45-219 (273)
32 PLN02490 MPBQ/MSBQ methyltrans 99.5 4.1E-13 8.9E-18 124.1 16.9 132 134-276 113-259 (340)
33 KOG1270 Methyltransferases [Co 99.5 2.4E-14 5.2E-19 124.7 8.1 110 133-249 88-197 (282)
34 PRK00121 trmB tRNA (guanine-N( 99.5 1.1E-13 2.3E-18 119.8 11.8 129 134-269 40-177 (202)
35 PRK14968 putative methyltransf 99.5 1E-12 2.2E-17 111.6 17.6 144 115-272 8-172 (188)
36 PRK11873 arsM arsenite S-adeno 99.5 5.6E-13 1.2E-17 120.4 16.6 134 131-272 74-229 (272)
37 TIGR00452 methyltransferase, p 99.5 8.7E-13 1.9E-17 120.9 17.2 148 115-272 103-272 (314)
38 TIGR03704 PrmC_rel_meth putati 99.5 1E-12 2.2E-17 117.4 17.1 143 119-272 70-239 (251)
39 COG2813 RsmC 16S RNA G1207 met 99.5 3.6E-13 7.9E-18 120.6 14.2 116 123-248 147-267 (300)
40 TIGR00477 tehB tellurite resis 99.5 3.4E-13 7.4E-18 115.9 13.2 98 132-239 28-127 (195)
41 PRK00517 prmA ribosomal protei 99.5 8.7E-13 1.9E-17 117.8 16.3 136 115-272 102-237 (250)
42 PF08241 Methyltransf_11: Meth 99.5 9.7E-14 2.1E-18 104.1 8.5 91 139-239 1-91 (95)
43 PRK00377 cbiT cobalt-precorrin 99.5 1.4E-12 3E-17 112.4 16.9 135 129-273 35-170 (198)
44 PRK08317 hypothetical protein; 99.5 1.9E-12 4.1E-17 113.8 17.6 121 117-246 2-123 (241)
45 PRK14103 trans-aconitate 2-met 99.5 8.2E-13 1.8E-17 118.2 15.4 95 131-239 26-120 (255)
46 PF08242 Methyltransf_12: Meth 99.5 1E-14 2.3E-19 111.3 2.1 95 139-239 1-97 (99)
47 TIGR00406 prmA ribosomal prote 99.5 1.6E-12 3.5E-17 118.4 16.7 139 115-270 142-280 (288)
48 TIGR03533 L3_gln_methyl protei 99.5 2.5E-12 5.4E-17 116.9 17.3 127 134-271 121-272 (284)
49 PRK01683 trans-aconitate 2-met 99.5 2.4E-12 5.1E-17 115.3 16.7 109 123-245 20-128 (258)
50 PF13489 Methyltransf_23: Meth 99.5 6.8E-13 1.5E-17 109.5 11.7 99 132-250 20-118 (161)
51 PRK00216 ubiE ubiquinone/menaq 99.5 4.4E-12 9.5E-17 111.7 17.4 109 132-247 49-158 (239)
52 PRK10258 biotin biosynthesis p 99.5 1.2E-12 2.6E-17 116.8 13.7 111 122-247 30-140 (251)
53 PF08003 Methyltransf_9: Prote 99.4 4.7E-12 1E-16 113.4 16.3 146 116-271 98-265 (315)
54 PRK14966 unknown domain/N5-glu 99.4 7E-12 1.5E-16 117.9 18.0 142 115-268 234-400 (423)
55 PRK09489 rsmC 16S ribosomal RN 99.4 3.1E-12 6.8E-17 118.9 15.4 103 135-248 197-304 (342)
56 PRK13168 rumA 23S rRNA m(5)U19 99.4 2.6E-12 5.6E-17 123.8 15.4 152 119-284 282-435 (443)
57 TIGR02021 BchM-ChlM magnesium 99.4 4.1E-12 8.8E-17 111.1 15.2 129 132-273 53-206 (219)
58 COG2890 HemK Methylase of poly 99.4 5.8E-12 1.3E-16 114.0 16.5 118 137-266 113-255 (280)
59 PRK12335 tellurite resistance 99.4 2E-12 4.3E-17 117.8 13.4 97 133-239 119-217 (287)
60 TIGR02469 CbiT precorrin-6Y C5 99.4 5.7E-12 1.2E-16 99.5 14.3 107 125-239 10-116 (124)
61 PRK04266 fibrillarin; Provisio 99.4 9E-12 2E-16 109.3 16.9 153 110-273 45-210 (226)
62 TIGR03534 RF_mod_PrmC protein- 99.4 9.5E-12 2.1E-16 110.7 17.2 142 115-268 69-236 (251)
63 PRK15451 tRNA cmo(5)U34 methyl 99.4 3E-12 6.6E-17 114.1 13.6 107 133-248 55-165 (247)
64 PRK05134 bifunctional 3-demeth 99.4 8.3E-12 1.8E-16 110.1 16.0 141 123-273 37-205 (233)
65 TIGR00740 methyltransferase, p 99.4 7.7E-12 1.7E-16 110.9 14.8 108 134-250 53-164 (239)
66 COG2242 CobL Precorrin-6B meth 99.4 2.2E-11 4.8E-16 101.9 16.3 130 130-272 30-160 (187)
67 PRK11805 N5-glutamine S-adenos 99.4 2E-11 4.4E-16 112.0 17.5 125 136-271 135-284 (307)
68 TIGR01983 UbiG ubiquinone bios 99.4 1.6E-11 3.5E-16 107.4 15.9 132 132-272 43-202 (224)
69 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 2.6E-11 5.6E-16 105.6 17.0 106 132-247 37-143 (223)
70 PF13659 Methyltransf_26: Meth 99.4 1.8E-12 4E-17 101.7 8.3 106 135-246 1-114 (117)
71 PRK15128 23S rRNA m(5)C1962 me 99.4 4.6E-12 1E-16 119.8 12.4 136 133-274 219-370 (396)
72 PRK09328 N5-glutamine S-adenos 99.4 1.8E-11 3.9E-16 110.5 15.7 142 115-267 89-256 (275)
73 PLN02585 magnesium protoporphy 99.4 1.2E-11 2.7E-16 113.4 14.5 131 133-273 143-299 (315)
74 KOG1540 Ubiquinone biosynthesi 99.4 1.7E-11 3.7E-16 106.4 14.2 126 130-258 96-227 (296)
75 PRK11783 rlmL 23S rRNA m(2)G24 99.4 7E-12 1.5E-16 127.0 13.9 132 133-273 537-680 (702)
76 COG2263 Predicted RNA methylas 99.4 2.4E-11 5.1E-16 101.4 13.8 127 130-272 41-167 (198)
77 PRK07402 precorrin-6B methylas 99.3 2.5E-11 5.5E-16 104.3 14.6 135 125-271 31-168 (196)
78 TIGR00536 hemK_fam HemK family 99.3 4.6E-11 1E-15 108.6 17.0 142 116-267 95-263 (284)
79 KOG1271 Methyltransferases [Ge 99.3 1.4E-11 3E-16 101.8 12.1 159 100-269 28-201 (227)
80 TIGR00091 tRNA (guanine-N(7)-) 99.3 9.1E-12 2E-16 107.0 11.7 128 134-268 16-153 (194)
81 PRK01544 bifunctional N5-gluta 99.3 3.3E-11 7.3E-16 117.7 16.9 125 134-268 138-288 (506)
82 PRK13944 protein-L-isoaspartat 99.3 2.9E-11 6.3E-16 104.8 14.3 107 122-239 60-167 (205)
83 PF03848 TehB: Tellurite resis 99.3 1.4E-11 3E-16 104.8 11.8 103 131-245 27-131 (192)
84 TIGR02072 BioC biotin biosynth 99.3 2.4E-11 5.1E-16 106.9 13.7 103 133-247 33-135 (240)
85 PF13649 Methyltransf_25: Meth 99.3 2.8E-12 6E-17 98.3 6.3 95 138-239 1-101 (101)
86 TIGR01177 conserved hypothetic 99.3 4.3E-11 9.3E-16 111.1 15.5 132 120-266 168-309 (329)
87 PRK11705 cyclopropane fatty ac 99.3 5.4E-11 1.2E-15 112.4 16.3 137 124-276 157-315 (383)
88 TIGR02716 C20_methyl_CrtF C-20 99.3 1E-10 2.2E-15 107.5 17.0 114 124-247 139-254 (306)
89 PRK07580 Mg-protoporphyrin IX 99.3 5.8E-11 1.3E-15 104.3 14.6 133 132-277 61-218 (230)
90 PRK06922 hypothetical protein; 99.3 2E-11 4.4E-16 119.8 12.5 110 131-247 415-537 (677)
91 PRK11188 rrmJ 23S rRNA methylt 99.3 6.5E-11 1.4E-15 102.9 14.4 126 132-275 49-192 (209)
92 TIGR00080 pimt protein-L-isoas 99.3 4.5E-11 9.9E-16 104.3 13.5 107 121-239 64-171 (215)
93 TIGR00479 rumA 23S rRNA (uraci 99.3 3.4E-11 7.3E-16 115.8 13.8 151 119-282 277-429 (431)
94 PRK05785 hypothetical protein; 99.3 3E-11 6.4E-16 106.3 12.0 90 134-238 51-140 (226)
95 TIGR03587 Pse_Me-ase pseudamin 99.3 9.9E-11 2.1E-15 101.3 15.0 92 132-235 41-134 (204)
96 PRK13942 protein-L-isoaspartat 99.3 6.6E-11 1.4E-15 103.1 13.8 109 119-239 61-170 (212)
97 PRK10909 rsmD 16S rRNA m(2)G96 99.3 5.1E-11 1.1E-15 102.5 11.6 108 133-250 52-161 (199)
98 TIGR02085 meth_trns_rumB 23S r 99.2 8.8E-11 1.9E-15 110.8 13.4 136 133-284 232-367 (374)
99 PRK03522 rumB 23S rRNA methylu 99.2 6.4E-11 1.4E-15 109.3 12.1 136 133-284 172-307 (315)
100 PRK10901 16S rRNA methyltransf 99.2 1.8E-10 3.9E-15 110.6 15.4 147 111-268 224-396 (427)
101 PF05401 NodS: Nodulation prot 99.2 5.7E-11 1.2E-15 100.3 10.1 126 135-273 44-180 (201)
102 PLN02336 phosphoethanolamine N 99.2 1.2E-10 2.7E-15 113.3 13.9 129 131-269 34-178 (475)
103 PLN02672 methionine S-methyltr 99.2 3.3E-10 7.1E-15 117.7 17.4 150 116-270 99-300 (1082)
104 COG2519 GCD14 tRNA(1-methylade 99.2 2.1E-10 4.7E-15 100.1 13.6 130 125-268 85-215 (256)
105 PRK14121 tRNA (guanine-N(7)-)- 99.2 2.2E-10 4.8E-15 107.1 14.1 108 134-247 122-235 (390)
106 COG4106 Tam Trans-aconitate me 99.2 1.7E-10 3.8E-15 97.9 11.0 97 131-239 27-123 (257)
107 PTZ00146 fibrillarin; Provisio 99.2 1.5E-09 3.2E-14 97.9 17.2 150 112-272 107-270 (293)
108 PRK06202 hypothetical protein; 99.2 3.7E-10 8.1E-15 99.6 13.1 106 133-251 59-170 (232)
109 KOG1499 Protein arginine N-met 99.2 8E-11 1.7E-15 107.0 8.6 107 126-239 52-161 (346)
110 PHA03411 putative methyltransf 99.2 4.7E-10 1E-14 100.0 12.9 124 134-269 64-210 (279)
111 PRK11727 23S rRNA mA1618 methy 99.2 1.2E-09 2.7E-14 100.2 16.0 86 134-222 114-203 (321)
112 PLN03075 nicotianamine synthas 99.2 5.9E-10 1.3E-14 100.8 13.6 107 134-247 123-233 (296)
113 PRK00312 pcm protein-L-isoaspa 99.2 7.4E-10 1.6E-14 96.3 13.9 104 122-239 66-169 (212)
114 PLN02781 Probable caffeoyl-CoA 99.2 2E-10 4.4E-15 101.5 10.3 111 123-239 57-172 (234)
115 TIGR00563 rsmB ribosomal RNA s 99.2 7.8E-10 1.7E-14 106.2 14.8 123 117-248 225-369 (426)
116 TIGR00095 RNA methyltransferas 99.1 4.3E-10 9.3E-15 96.1 11.3 110 132-249 47-160 (189)
117 PRK04457 spermidine synthase; 99.1 3.7E-10 8E-15 101.4 11.4 124 134-264 66-194 (262)
118 PRK05031 tRNA (uracil-5-)-meth 99.1 4.7E-10 1E-14 105.4 12.5 148 119-283 192-353 (362)
119 TIGR02081 metW methionine bios 99.1 1.2E-09 2.6E-14 93.8 14.0 123 134-273 13-167 (194)
120 PF07021 MetW: Methionine bios 99.1 6.7E-10 1.4E-14 93.6 12.0 123 134-273 13-167 (193)
121 TIGR00438 rrmJ cell division p 99.1 2E-09 4.3E-14 91.9 14.9 126 121-264 19-162 (188)
122 COG4122 Predicted O-methyltran 99.1 3.7E-10 7.9E-15 97.8 10.3 107 132-247 57-165 (219)
123 PRK14902 16S rRNA methyltransf 99.1 1.5E-09 3.3E-14 104.7 15.8 131 132-269 248-404 (444)
124 TIGR03840 TMPT_Se_Te thiopurin 99.1 1.5E-09 3.2E-14 94.5 14.2 146 119-272 20-186 (213)
125 COG2265 TrmA SAM-dependent met 99.1 4.3E-10 9.4E-15 107.3 11.4 151 119-282 278-429 (432)
126 PF10672 Methyltrans_SAM: S-ad 99.1 7.9E-11 1.7E-15 106.3 5.8 158 106-274 101-265 (286)
127 PRK14904 16S rRNA methyltransf 99.1 2.4E-09 5.2E-14 103.4 16.4 127 110-249 229-379 (445)
128 cd02440 AdoMet_MTases S-adenos 99.1 1E-09 2.2E-14 82.3 10.9 97 137-239 1-98 (107)
129 COG1092 Predicted SAM-dependen 99.1 7.4E-10 1.6E-14 103.9 12.1 134 133-272 216-365 (393)
130 smart00138 MeTrc Methyltransfe 99.1 4.5E-10 9.8E-15 101.0 10.2 110 134-247 99-242 (264)
131 COG4976 Predicted methyltransf 99.1 4.4E-11 9.6E-16 102.3 3.1 148 107-273 103-265 (287)
132 TIGR00446 nop2p NOL1/NOP2/sun 99.1 2.8E-09 6E-14 96.0 14.6 110 132-249 69-201 (264)
133 KOG4300 Predicted methyltransf 99.1 1.2E-09 2.6E-14 92.2 11.2 116 137-261 79-198 (252)
134 PRK14901 16S rRNA methyltransf 99.1 3E-09 6.5E-14 102.4 15.6 131 131-267 249-407 (434)
135 KOG2904 Predicted methyltransf 99.1 3E-09 6.5E-14 93.4 13.5 106 116-224 128-238 (328)
136 PF08704 GCD14: tRNA methyltra 99.1 1.6E-09 3.6E-14 95.8 12.0 134 125-269 31-167 (247)
137 PRK13943 protein-L-isoaspartat 99.1 2.8E-09 6E-14 98.2 13.8 106 122-239 68-174 (322)
138 PF03602 Cons_hypoth95: Conser 99.1 2E-10 4.3E-15 97.6 5.7 111 133-250 41-156 (183)
139 PRK13255 thiopurine S-methyltr 99.1 3.8E-09 8.1E-14 92.3 13.6 146 119-272 23-189 (218)
140 COG2518 Pcm Protein-L-isoaspar 99.0 2.1E-09 4.5E-14 91.9 11.1 112 115-240 53-164 (209)
141 PRK11088 rrmA 23S rRNA methylt 99.0 2.1E-09 4.5E-14 97.2 11.7 110 119-249 71-183 (272)
142 TIGR02143 trmA_only tRNA (urac 99.0 9.7E-09 2.1E-13 96.2 14.9 149 119-284 183-345 (353)
143 PLN02476 O-methyltransferase 99.0 2E-09 4.3E-14 96.8 9.7 108 131-247 115-227 (278)
144 KOG1541 Predicted protein carb 99.0 5.3E-09 1.2E-13 89.2 11.3 122 134-268 50-182 (270)
145 PF01596 Methyltransf_3: O-met 99.0 1.8E-09 4E-14 93.2 8.6 121 118-247 29-154 (205)
146 KOG3010 Methyltransferase [Gen 99.0 1.5E-09 3.1E-14 93.9 7.8 104 136-247 35-138 (261)
147 PRK14903 16S rRNA methyltransf 99.0 9.6E-09 2.1E-13 98.7 14.3 112 131-249 234-368 (431)
148 PRK00811 spermidine synthase; 99.0 7.2E-09 1.6E-13 94.2 12.6 129 134-266 76-213 (283)
149 PF06080 DUF938: Protein of un 99.0 1.2E-08 2.7E-13 87.1 13.0 135 120-264 16-164 (204)
150 PF01135 PCMT: Protein-L-isoas 99.0 3.8E-09 8.2E-14 91.6 9.9 108 120-239 58-166 (209)
151 PRK01581 speE spermidine synth 99.0 8.7E-09 1.9E-13 95.4 12.6 135 134-273 150-297 (374)
152 TIGR03438 probable methyltrans 99.0 1.3E-08 2.7E-13 93.4 13.6 107 134-245 63-175 (301)
153 PHA03412 putative methyltransf 99.0 5.1E-09 1.1E-13 91.5 10.3 94 134-239 49-157 (241)
154 COG0742 N6-adenine-specific me 98.9 1.5E-08 3.3E-13 85.3 12.1 110 132-250 41-156 (187)
155 TIGR00417 speE spermidine synt 98.9 1.6E-08 3.5E-13 91.3 12.4 109 134-246 72-185 (270)
156 KOG2361 Predicted methyltransf 98.9 5.7E-09 1.2E-13 90.2 8.7 104 137-247 74-183 (264)
157 TIGR00478 tly hemolysin TlyA f 98.9 1.6E-08 3.4E-13 88.7 11.1 110 114-239 55-165 (228)
158 KOG3191 Predicted N6-DNA-methy 98.9 9.6E-08 2.1E-12 79.2 14.6 141 116-272 29-192 (209)
159 PLN02366 spermidine synthase 98.9 2.9E-08 6.3E-13 91.0 12.8 129 134-265 91-227 (308)
160 PF05958 tRNA_U5-meth_tr: tRNA 98.9 1.2E-08 2.5E-13 95.6 10.4 152 116-284 179-344 (352)
161 smart00650 rADc Ribosomal RNA 98.9 2.6E-08 5.6E-13 83.6 11.4 86 125-221 4-89 (169)
162 KOG2899 Predicted methyltransf 98.9 2.3E-08 5E-13 86.5 11.0 117 130-249 54-210 (288)
163 KOG1500 Protein arginine N-met 98.9 2.3E-08 5E-13 90.1 11.4 104 127-239 170-276 (517)
164 PRK04338 N(2),N(2)-dimethylgua 98.9 1.6E-08 3.4E-13 95.5 10.7 95 135-239 58-152 (382)
165 PRK03612 spermidine synthase; 98.8 2.9E-08 6.3E-13 97.6 12.4 132 134-269 297-440 (521)
166 PF05219 DREV: DREV methyltran 98.8 2.2E-07 4.7E-12 81.9 15.3 120 133-271 93-238 (265)
167 COG1041 Predicted DNA modifica 98.8 8.2E-08 1.8E-12 87.9 13.0 135 120-270 183-327 (347)
168 PF02527 GidB: rRNA small subu 98.8 1.2E-07 2.6E-12 80.5 12.9 125 137-274 51-176 (184)
169 PF02475 Met_10: Met-10+ like- 98.8 6E-08 1.3E-12 83.3 9.9 98 132-239 99-196 (200)
170 PLN02589 caffeoyl-CoA O-methyl 98.7 3E-08 6.5E-13 88.0 8.1 108 131-247 76-189 (247)
171 PF05185 PRMT5: PRMT5 arginine 98.7 7.7E-08 1.7E-12 92.5 10.9 101 133-239 185-291 (448)
172 KOG3420 Predicted RNA methylas 98.7 5E-08 1.1E-12 78.0 7.9 84 129-220 43-126 (185)
173 PF00891 Methyltransf_2: O-met 98.7 1.4E-07 3E-12 83.7 11.7 105 127-249 93-201 (241)
174 PTZ00338 dimethyladenosine tra 98.7 1E-07 2.3E-12 86.9 10.4 92 120-220 22-113 (294)
175 PF01861 DUF43: Protein of unk 98.7 1.1E-06 2.4E-11 76.7 16.2 148 114-271 25-176 (243)
176 COG2520 Predicted methyltransf 98.7 2.1E-07 4.6E-12 85.7 12.1 136 133-280 187-332 (341)
177 PRK04148 hypothetical protein; 98.7 1.6E-07 3.6E-12 75.1 9.4 99 121-239 3-102 (134)
178 PRK14896 ksgA 16S ribosomal RN 98.7 1.7E-07 3.7E-12 84.0 10.7 89 120-220 15-103 (258)
179 PRK00274 ksgA 16S ribosomal RN 98.7 9.9E-08 2.1E-12 86.3 9.1 89 121-221 29-117 (272)
180 PF01170 UPF0020: Putative RNA 98.7 8.5E-07 1.8E-11 75.2 14.0 137 120-270 14-168 (179)
181 PRK13256 thiopurine S-methyltr 98.7 5.7E-07 1.2E-11 78.7 13.2 137 104-247 15-165 (226)
182 KOG2920 Predicted methyltransf 98.6 3.2E-08 6.9E-13 87.9 5.0 127 109-239 89-228 (282)
183 PF05724 TPMT: Thiopurine S-me 98.6 3.3E-07 7.2E-12 80.0 11.2 162 106-273 11-190 (218)
184 TIGR00308 TRM1 tRNA(guanine-26 98.6 2.5E-07 5.4E-12 87.0 10.9 101 135-246 45-146 (374)
185 COG3963 Phospholipid N-methylt 98.6 3E-07 6.5E-12 75.3 9.3 131 109-249 25-158 (194)
186 PLN02823 spermine synthase 98.6 1E-06 2.2E-11 81.8 12.6 104 134-239 103-214 (336)
187 TIGR00755 ksgA dimethyladenosi 98.5 1E-06 2.3E-11 78.7 12.1 89 120-221 15-106 (253)
188 PF02390 Methyltransf_4: Putat 98.5 7.3E-07 1.6E-11 76.6 10.4 126 137-269 20-156 (195)
189 COG0357 GidB Predicted S-adeno 98.5 1.6E-06 3.5E-11 75.0 11.1 128 135-274 68-196 (215)
190 KOG2940 Predicted methyltransf 98.4 5.6E-07 1.2E-11 77.4 7.2 108 135-254 73-180 (325)
191 PF03291 Pox_MCEL: mRNA cappin 98.4 2.5E-06 5.3E-11 79.1 11.6 129 116-247 44-186 (331)
192 PRK00536 speE spermidine synth 98.4 5.1E-06 1.1E-10 74.3 12.1 118 134-267 72-193 (262)
193 PF09445 Methyltransf_15: RNA 98.4 2.6E-06 5.5E-11 70.7 9.4 78 136-218 1-79 (163)
194 KOG2187 tRNA uracil-5-methyltr 98.4 2.1E-06 4.5E-11 81.9 9.5 114 117-237 366-482 (534)
195 PRK11933 yebU rRNA (cytosine-C 98.3 1.4E-05 3E-10 77.4 13.6 130 110-249 90-244 (470)
196 PF05971 Methyltransf_10: Prot 98.2 6.1E-06 1.3E-10 74.8 9.6 84 135-222 103-191 (299)
197 KOG1661 Protein-L-isoaspartate 98.2 5.3E-06 1.2E-10 70.6 8.5 118 118-245 64-191 (237)
198 PRK11783 rlmL 23S rRNA m(2)G24 98.2 2.5E-05 5.3E-10 79.7 14.8 127 117-248 172-348 (702)
199 PLN02232 ubiquinone biosynthes 98.2 7E-06 1.5E-10 68.2 8.5 82 162-248 1-82 (160)
200 COG0421 SpeE Spermidine syntha 98.2 1.6E-05 3.6E-10 71.8 11.4 102 136-239 78-184 (282)
201 COG0220 Predicted S-adenosylme 98.2 1.5E-05 3.2E-10 69.9 10.7 108 136-250 50-166 (227)
202 KOG0820 Ribosomal RNA adenine 98.2 1.5E-05 3.2E-10 70.5 10.2 97 115-222 40-136 (315)
203 PF01564 Spermine_synth: Sperm 98.2 1.1E-05 2.4E-10 71.8 9.3 133 134-270 76-217 (246)
204 PF05891 Methyltransf_PK: AdoM 98.2 1.6E-05 3.4E-10 68.6 9.8 130 134-272 55-200 (218)
205 COG2521 Predicted archaeal met 98.1 6.2E-06 1.3E-10 71.3 6.5 135 132-269 132-273 (287)
206 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.1 7.3E-06 1.6E-10 73.0 7.3 138 131-272 53-238 (256)
207 KOG1663 O-methyltransferase [S 98.1 2.8E-05 6.1E-10 67.2 10.5 114 125-247 64-182 (237)
208 COG0030 KsgA Dimethyladenosine 98.1 2.6E-05 5.6E-10 69.4 10.3 91 121-220 17-107 (259)
209 PF02384 N6_Mtase: N-6 DNA Met 98.1 3.4E-05 7.3E-10 71.0 11.5 144 120-265 32-205 (311)
210 KOG2915 tRNA(1-methyladenosine 98.1 0.00014 3.1E-09 64.3 14.7 131 128-268 99-230 (314)
211 PF05148 Methyltransf_8: Hypot 98.1 5E-05 1.1E-09 65.0 11.5 128 115-272 54-184 (219)
212 TIGR02987 met_A_Alw26 type II 98.1 5.9E-05 1.3E-09 74.5 13.8 82 134-219 31-123 (524)
213 KOG3987 Uncharacterized conser 98.1 3.6E-06 7.9E-11 71.4 4.4 134 118-268 94-255 (288)
214 PRK01544 bifunctional N5-gluta 98.1 3.9E-05 8.5E-10 75.3 11.7 128 134-268 347-483 (506)
215 COG4076 Predicted RNA methylas 98.0 8.4E-06 1.8E-10 68.2 5.6 94 136-239 34-129 (252)
216 TIGR01444 fkbM_fam methyltrans 98.0 2.3E-05 4.9E-10 63.4 8.1 58 137-198 1-58 (143)
217 KOG1975 mRNA cap methyltransfe 98.0 2.3E-05 4.9E-10 70.8 8.4 105 134-239 117-231 (389)
218 PF01739 CheR: CheR methyltran 98.0 1.1E-05 2.3E-10 69.3 5.9 109 134-246 31-174 (196)
219 PRK10611 chemotaxis methyltran 98.0 2.7E-05 5.9E-10 70.7 8.3 110 135-247 116-262 (287)
220 COG1352 CheR Methylase of chem 98.0 7.2E-05 1.6E-09 67.1 10.9 135 107-247 66-241 (268)
221 PF09243 Rsm22: Mitochondrial 98.0 0.00021 4.5E-09 64.7 13.6 126 131-268 30-163 (274)
222 PF08123 DOT1: Histone methyla 97.9 2.1E-05 4.6E-10 68.0 6.7 108 129-239 37-152 (205)
223 PHA01634 hypothetical protein 97.9 5.7E-05 1.2E-09 59.3 7.9 75 132-217 26-100 (156)
224 PRK00050 16S rRNA m(4)C1402 me 97.9 2.8E-05 6.1E-10 70.8 6.6 59 122-180 7-66 (296)
225 KOG2497 Predicted methyltransf 97.9 9.3E-06 2E-10 72.4 3.2 130 105-238 62-193 (262)
226 PF04816 DUF633: Family of unk 97.9 0.00017 3.7E-09 62.3 11.0 122 138-271 1-122 (205)
227 KOG1709 Guanidinoacetate methy 97.9 0.00011 2.4E-09 62.9 9.4 100 133-239 100-200 (271)
228 COG0116 Predicted N6-adenine-s 97.9 0.00031 6.6E-09 65.6 13.1 120 120-247 177-344 (381)
229 PF12147 Methyltransf_20: Puta 97.9 0.00088 1.9E-08 60.2 15.4 135 108-247 105-249 (311)
230 COG4262 Predicted spermidine s 97.8 0.00024 5.1E-09 65.4 11.8 132 134-269 289-432 (508)
231 COG0144 Sun tRNA and rRNA cyto 97.8 0.0013 2.8E-08 61.7 17.0 133 131-270 153-314 (355)
232 PF01728 FtsJ: FtsJ-like methy 97.8 4.8E-05 1E-09 64.3 6.4 53 117-169 4-59 (181)
233 PF00398 RrnaAD: Ribosomal RNA 97.8 0.00031 6.8E-09 63.1 11.4 116 119-246 15-131 (262)
234 PF01269 Fibrillarin: Fibrilla 97.7 0.0013 2.9E-08 56.9 13.9 149 111-270 47-209 (229)
235 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.7 0.00015 3.2E-09 66.0 8.5 130 110-248 64-220 (283)
236 PF11968 DUF3321: Putative met 97.7 0.0007 1.5E-08 58.3 12.0 134 117-272 30-180 (219)
237 PRK11760 putative 23S rRNA C24 97.7 0.0022 4.7E-08 59.3 15.5 116 132-267 209-333 (357)
238 COG1189 Predicted rRNA methyla 97.6 0.00037 8.1E-09 60.7 9.3 111 115-239 60-172 (245)
239 COG0293 FtsJ 23S rRNA methylas 97.6 0.0014 3E-08 56.3 12.7 130 116-264 27-175 (205)
240 PF13679 Methyltransf_32: Meth 97.6 0.00016 3.4E-09 58.7 6.7 50 133-182 24-77 (141)
241 PRK10742 putative methyltransf 97.6 0.00034 7.4E-09 61.8 8.3 108 120-235 76-190 (250)
242 COG0500 SmtA SAM-dependent met 97.6 0.0022 4.7E-08 50.5 12.5 102 138-247 52-155 (257)
243 KOG3045 Predicted RNA methylas 97.5 0.0019 4.1E-08 57.0 11.6 126 115-272 162-290 (325)
244 COG2384 Predicted SAM-dependen 97.4 0.0044 9.6E-08 53.5 13.1 124 134-269 16-139 (226)
245 PF03141 Methyltransf_29: Puta 97.3 0.00014 3E-09 69.7 3.2 101 136-249 119-221 (506)
246 cd00315 Cyt_C5_DNA_methylase C 97.3 0.0058 1.3E-07 55.3 12.8 123 137-270 2-140 (275)
247 KOG1501 Arginine N-methyltrans 97.1 0.00099 2.2E-08 62.7 6.3 97 137-239 69-169 (636)
248 PF13578 Methyltransf_24: Meth 97.1 6.1E-05 1.3E-09 57.8 -1.4 101 139-247 1-104 (106)
249 PF07942 N2227: N2227-like pro 97.1 0.026 5.6E-07 50.8 14.8 134 134-273 56-242 (270)
250 COG1889 NOP1 Fibrillarin-like 97.0 0.048 1E-06 46.6 15.0 148 112-271 51-212 (231)
251 KOG2671 Putative RNA methylase 97.0 0.0024 5.3E-08 58.4 7.5 105 104-220 184-295 (421)
252 PF03059 NAS: Nicotianamine sy 97.0 0.009 2E-07 53.9 10.7 99 136-239 122-224 (276)
253 TIGR03439 methyl_EasF probable 96.9 0.025 5.4E-07 52.3 13.2 110 134-247 76-197 (319)
254 KOG2730 Methylase [General fun 96.9 0.00091 2E-08 57.6 3.5 108 108-222 69-179 (263)
255 COG1568 Predicted methyltransf 96.9 0.007 1.5E-07 53.9 8.9 133 130-269 148-284 (354)
256 KOG1269 SAM-dependent methyltr 96.7 0.0047 1E-07 57.9 7.2 103 131-239 107-209 (364)
257 PF02005 TRM: N2,N2-dimethylgu 96.6 0.0055 1.2E-07 57.9 7.2 105 134-247 49-154 (377)
258 KOG0024 Sorbitol dehydrogenase 96.6 0.005 1.1E-07 56.1 6.3 101 126-240 161-268 (354)
259 COG1867 TRM1 N2,N2-dimethylgua 96.6 0.014 3E-07 54.2 8.9 96 135-239 53-148 (380)
260 KOG1227 Putative methyltransfe 96.5 0.0024 5.1E-08 57.5 3.5 120 111-240 165-290 (351)
261 KOG3178 Hydroxyindole-O-methyl 96.4 0.032 6.9E-07 51.5 10.6 95 136-247 179-275 (342)
262 PF07091 FmrO: Ribosomal RNA m 96.3 0.019 4.1E-07 50.8 8.1 142 120-273 93-244 (251)
263 TIGR00006 S-adenosyl-methyltra 96.3 0.015 3.4E-07 53.2 7.8 60 121-180 7-66 (305)
264 PF04672 Methyltransf_19: S-ad 96.2 0.042 9.2E-07 49.2 9.9 126 136-268 70-214 (267)
265 PF06962 rRNA_methylase: Putat 96.1 0.048 1E-06 44.1 8.9 108 160-273 1-125 (140)
266 KOG4589 Cell division protein 96.1 0.07 1.5E-06 45.1 9.9 123 132-272 67-208 (232)
267 COG5459 Predicted rRNA methyla 96.0 0.019 4E-07 53.0 6.7 116 131-257 110-235 (484)
268 COG1063 Tdh Threonine dehydrog 96.0 0.029 6.4E-07 52.5 8.1 104 132-249 166-271 (350)
269 PRK09424 pntA NAD(P) transhydr 95.9 0.099 2.1E-06 51.4 11.5 107 132-248 162-286 (509)
270 COG1064 AdhP Zn-dependent alco 95.7 0.096 2.1E-06 48.6 10.1 91 130-240 162-254 (339)
271 PF04445 SAM_MT: Putative SAM- 95.7 0.083 1.8E-06 46.5 9.0 124 137-276 78-210 (234)
272 KOG1122 tRNA and rRNA cytosine 95.6 0.19 4.1E-06 47.6 11.7 112 132-249 239-373 (460)
273 PF00145 DNA_methylase: C-5 cy 95.6 0.027 5.9E-07 51.6 6.3 121 137-270 2-139 (335)
274 COG3129 Predicted SAM-dependen 95.6 0.061 1.3E-06 46.9 7.7 98 120-221 62-166 (292)
275 PF10354 DUF2431: Domain of un 95.5 0.18 4E-06 42.0 10.4 135 141-280 3-159 (166)
276 TIGR00675 dcm DNA-methyltransf 95.5 0.18 3.9E-06 46.6 11.3 120 138-270 1-137 (315)
277 PRK09880 L-idonate 5-dehydroge 95.5 0.088 1.9E-06 48.9 9.3 101 130-247 165-266 (343)
278 KOG3115 Methyltransferase-like 95.5 0.086 1.9E-06 45.1 8.1 47 136-182 62-108 (249)
279 TIGR01202 bchC 2-desacetyl-2-h 95.0 0.23 5.1E-06 45.4 10.5 88 133-247 143-231 (308)
280 KOG2078 tRNA modification enzy 95.0 0.022 4.7E-07 53.7 3.5 70 111-184 228-297 (495)
281 COG0270 Dcm Site-specific DNA 94.8 0.21 4.6E-06 46.3 9.6 123 135-268 3-142 (328)
282 KOG1331 Predicted methyltransf 94.7 0.073 1.6E-06 47.8 5.7 113 107-242 25-140 (293)
283 KOG2651 rRNA adenine N-6-methy 94.1 0.13 2.7E-06 48.1 6.1 54 121-175 140-193 (476)
284 COG1748 LYS9 Saccharopine dehy 94.1 0.41 8.9E-06 45.4 9.7 127 136-279 2-130 (389)
285 PF01555 N6_N4_Mtase: DNA meth 93.8 0.15 3.3E-06 43.8 5.9 54 120-176 178-231 (231)
286 PF03141 Methyltransf_29: Puta 93.7 0.14 3E-06 49.6 5.9 121 136-272 367-490 (506)
287 TIGR02822 adh_fam_2 zinc-bindi 93.7 0.79 1.7E-05 42.3 10.8 93 130-247 161-254 (329)
288 PRK10458 DNA cytosine methylas 93.6 1.2 2.6E-05 43.4 12.3 131 135-269 88-255 (467)
289 PRK11524 putative methyltransf 93.5 0.26 5.5E-06 44.8 7.1 58 121-181 196-253 (284)
290 KOG2352 Predicted spermine/spe 93.5 0.7 1.5E-05 44.6 10.1 103 136-246 50-162 (482)
291 KOG1253 tRNA methyltransferase 93.4 0.091 2E-06 50.6 4.0 99 134-239 109-210 (525)
292 COG1565 Uncharacterized conser 93.4 0.34 7.3E-06 45.2 7.6 63 119-181 59-132 (370)
293 PF04989 CmcI: Cephalosporin h 93.1 0.29 6.4E-06 42.2 6.4 106 134-247 32-147 (206)
294 KOG1562 Spermidine synthase [A 93.1 0.58 1.3E-05 42.4 8.4 107 133-239 120-230 (337)
295 cd08237 ribitol-5-phosphate_DH 92.9 0.5 1.1E-05 43.8 8.3 94 132-247 161-256 (341)
296 PRK13699 putative methylase; P 92.9 0.42 9.1E-06 42.0 7.3 57 122-181 152-208 (227)
297 COG2961 ComJ Protein involved 92.9 2.4 5.2E-05 37.6 11.7 148 109-266 61-215 (279)
298 KOG4058 Uncharacterized conser 92.8 1 2.2E-05 36.7 8.6 92 136-238 74-165 (199)
299 cd08281 liver_ADH_like1 Zinc-d 92.8 0.39 8.5E-06 45.1 7.4 103 130-247 187-290 (371)
300 KOG2198 tRNA cytosine-5-methyl 92.6 3.5 7.5E-05 38.6 12.9 131 131-268 152-319 (375)
301 cd05188 MDR Medium chain reduc 92.4 1.7 3.7E-05 38.0 10.7 106 122-248 121-233 (271)
302 PF11599 AviRa: RRNA methyltra 92.2 0.5 1.1E-05 40.9 6.5 71 108-180 27-99 (246)
303 KOG2912 Predicted DNA methylas 92.2 0.26 5.6E-06 45.1 5.0 79 139-221 107-191 (419)
304 PRK01747 mnmC bifunctional tRN 91.9 1.5 3.2E-05 44.8 10.9 133 136-277 59-231 (662)
305 PF02636 Methyltransf_28: Puta 91.6 0.34 7.3E-06 43.2 5.2 46 135-180 19-72 (252)
306 COG0286 HsdM Type I restrictio 91.5 1.1 2.3E-05 44.1 8.9 110 133-245 185-326 (489)
307 KOG0022 Alcohol dehydrogenase, 91.4 0.49 1.1E-05 43.3 5.9 47 130-176 188-235 (375)
308 cd08283 FDH_like_1 Glutathione 91.3 0.6 1.3E-05 44.1 6.9 109 130-247 180-306 (386)
309 PRK12749 quinate/shikimate deh 91.2 2.3 4.9E-05 38.8 10.3 129 132-268 121-252 (288)
310 PF14904 FAM86: Family of unkn 91.1 0.086 1.9E-06 39.7 0.7 40 4-46 58-97 (100)
311 COG4798 Predicted methyltransf 91.1 1.8 3.8E-05 37.1 8.6 134 131-270 45-202 (238)
312 PF05206 TRM13: Methyltransfer 90.6 0.61 1.3E-05 41.8 5.8 43 125-167 9-56 (259)
313 COG1062 AdhC Zn-dependent alco 90.6 0.7 1.5E-05 42.8 6.2 49 128-176 179-228 (366)
314 PRK12549 shikimate 5-dehydroge 90.5 6.8 0.00015 35.6 12.7 121 133-268 125-246 (284)
315 cd08230 glucose_DH Glucose deh 90.5 3.2 6.9E-05 38.6 10.9 96 132-247 170-269 (355)
316 TIGR01809 Shik-DH-AROM shikima 90.5 4.8 0.0001 36.5 11.6 122 133-268 123-250 (282)
317 cd08254 hydroxyacyl_CoA_DH 6-h 90.4 1.3 2.9E-05 40.3 8.1 101 131-247 162-263 (338)
318 PRK13699 putative methylase; P 90.4 1.4 3.1E-05 38.6 7.9 61 205-270 17-93 (227)
319 TIGR00561 pntA NAD(P) transhyd 90.0 1.6 3.4E-05 43.0 8.5 121 110-239 136-278 (511)
320 PF07757 AdoMet_MTase: Predict 89.8 0.48 1E-05 36.4 3.8 30 135-166 59-88 (112)
321 PRK12548 shikimate 5-dehydroge 89.7 2.7 5.9E-05 38.2 9.5 125 132-268 123-255 (289)
322 PRK10309 galactitol-1-phosphat 89.4 1.5 3.2E-05 40.6 7.7 46 130-175 156-202 (347)
323 cd08232 idonate-5-DH L-idonate 89.3 3.7 7.9E-05 37.6 10.2 98 133-247 164-262 (339)
324 PF02086 MethyltransfD12: D12 89.2 0.41 9E-06 42.4 3.6 57 122-180 8-64 (260)
325 PF01795 Methyltransf_5: MraW 89.1 0.36 7.9E-06 44.3 3.2 49 131-179 17-65 (310)
326 PLN02668 indole-3-acetate carb 88.8 6.2 0.00013 37.5 11.3 18 135-152 64-81 (386)
327 TIGR03366 HpnZ_proposed putati 88.6 1.6 3.4E-05 39.2 7.1 101 131-247 117-218 (280)
328 KOG1596 Fibrillarin and relate 88.4 15 0.00033 32.6 12.4 128 109-245 128-261 (317)
329 cd08255 2-desacetyl-2-hydroxye 88.4 5.8 0.00013 35.1 10.6 98 129-247 92-190 (277)
330 COG0275 Predicted S-adenosylme 88.3 1.9 4.2E-05 39.3 7.1 62 121-182 10-72 (314)
331 PF05050 Methyltransf_21: Meth 87.9 1.4 3E-05 35.7 5.7 44 140-183 1-50 (167)
332 KOG2798 Putative trehalase [Ca 87.2 11 0.00025 34.6 11.4 65 207-273 258-337 (369)
333 PF07279 DUF1442: Protein of u 87.2 10 0.00022 33.0 10.6 113 123-247 30-148 (218)
334 PF10237 N6-adenineMlase: Prob 87.1 9.1 0.0002 31.8 10.1 112 119-250 12-126 (162)
335 PRK15001 SAM-dependent 23S rib 87.1 8.2 0.00018 36.6 11.0 109 115-239 27-136 (378)
336 cd08293 PTGR2 Prostaglandin re 87.0 2.5 5.5E-05 38.8 7.6 101 132-247 150-254 (345)
337 PF01488 Shikimate_DH: Shikima 87.0 1.8 3.9E-05 34.6 5.7 79 132-221 9-88 (135)
338 PRK07523 gluconate 5-dehydroge 86.8 12 0.00026 32.6 11.6 80 133-218 8-97 (255)
339 PLN03154 putative allyl alcoho 86.7 3.3 7.2E-05 38.5 8.2 102 130-247 154-258 (348)
340 PF03686 UPF0146: Uncharacteri 86.6 1.6 3.4E-05 34.6 5.0 44 121-169 3-47 (127)
341 PRK00258 aroE shikimate 5-dehy 86.0 5 0.00011 36.2 8.7 119 132-268 120-240 (278)
342 cd08239 THR_DH_like L-threonin 85.2 3.1 6.8E-05 38.2 7.2 99 129-247 158-262 (339)
343 KOG2539 Mitochondrial/chloropl 85.2 3 6.4E-05 40.3 6.9 88 131-221 197-287 (491)
344 TIGR02356 adenyl_thiF thiazole 85.1 1.8 3.9E-05 37.2 5.1 35 133-168 19-55 (202)
345 PRK06124 gluconate 5-dehydroge 84.9 15 0.00033 32.0 11.2 80 133-218 9-98 (256)
346 PLN03209 translocon at the inn 84.9 36 0.00077 34.2 14.6 86 130-216 75-167 (576)
347 cd08240 6_hydroxyhexanoate_dh_ 84.8 3.4 7.4E-05 38.1 7.3 99 134-247 175-274 (350)
348 cd08234 threonine_DH_like L-th 84.6 15 0.00032 33.4 11.4 99 129-247 154-257 (334)
349 PLN02740 Alcohol dehydrogenase 84.5 2.2 4.8E-05 40.2 6.0 47 130-176 194-241 (381)
350 TIGR03201 dearomat_had 6-hydro 84.5 3.3 7.3E-05 38.4 7.1 46 130-176 162-208 (349)
351 PF03446 NAD_binding_2: NAD bi 84.3 1.2 2.5E-05 36.9 3.4 115 138-275 4-122 (163)
352 PRK07904 short chain dehydroge 84.1 19 0.00041 31.7 11.5 78 134-216 7-95 (253)
353 cd01065 NAD_bind_Shikimate_DH 84.1 16 0.00036 29.2 10.3 114 133-268 17-135 (155)
354 TIGR02354 thiF_fam2 thiamine b 83.8 7.8 0.00017 33.2 8.5 34 133-167 19-54 (200)
355 cd08233 butanediol_DH_like (2R 83.7 5.4 0.00012 36.8 8.1 104 129-247 167-272 (351)
356 TIGR02818 adh_III_F_hyde S-(hy 83.5 2.8 6.1E-05 39.3 6.2 47 130-176 181-228 (368)
357 KOG3924 Putative protein methy 83.5 2.9 6.4E-05 39.4 6.0 108 131-239 189-302 (419)
358 cd01487 E1_ThiF_like E1_ThiF_l 83.3 8.7 0.00019 32.1 8.4 31 137-168 1-33 (174)
359 cd05285 sorbitol_DH Sorbitol d 83.2 6.1 0.00013 36.4 8.2 105 128-247 156-265 (343)
360 PRK12826 3-ketoacyl-(acyl-carr 83.0 21 0.00046 30.7 11.3 81 133-219 4-94 (251)
361 cd08294 leukotriene_B4_DH_like 82.4 4.6 9.9E-05 36.7 7.0 100 130-246 139-240 (329)
362 COG1255 Uncharacterized protei 82.2 6 0.00013 30.8 6.2 80 136-239 15-95 (129)
363 COG4301 Uncharacterized conser 82.2 19 0.00042 32.1 10.1 123 120-247 64-193 (321)
364 TIGR03451 mycoS_dep_FDH mycoth 82.0 3.6 7.8E-05 38.3 6.2 103 130-247 172-276 (358)
365 PRK11524 putative methyltransf 81.9 5.2 0.00011 36.3 7.0 57 206-268 25-98 (284)
366 PRK11064 wecC UDP-N-acetyl-D-m 81.8 28 0.0006 33.4 12.3 111 136-264 4-136 (415)
367 COG0169 AroE Shikimate 5-dehyd 81.4 12 0.00027 34.0 9.2 131 132-280 123-255 (283)
368 PLN02827 Alcohol dehydrogenase 80.8 4.1 8.9E-05 38.4 6.2 46 130-175 189-235 (378)
369 COG0677 WecC UDP-N-acetyl-D-ma 80.8 17 0.00036 34.7 9.9 125 136-268 10-151 (436)
370 KOG0822 Protein kinase inhibit 80.6 5 0.00011 39.4 6.5 97 137-239 370-472 (649)
371 PRK12475 thiamine/molybdopteri 80.4 4.6 0.0001 37.7 6.3 35 133-168 22-58 (338)
372 cd05279 Zn_ADH1 Liver alcohol 80.3 5.7 0.00012 37.1 7.0 103 130-247 179-285 (365)
373 PRK08644 thiamine biosynthesis 79.8 13 0.00027 32.3 8.4 34 133-167 26-61 (212)
374 PRK14027 quinate/shikimate deh 79.7 14 0.00031 33.5 9.1 123 133-268 125-248 (283)
375 PRK15057 UDP-glucose 6-dehydro 79.6 40 0.00087 32.1 12.4 118 138-266 3-136 (388)
376 PRK07102 short chain dehydroge 79.5 30 0.00066 29.8 11.0 76 136-216 2-84 (243)
377 cd00401 AdoHcyase S-adenosyl-L 79.5 5.5 0.00012 38.3 6.5 89 132-247 199-289 (413)
378 cd00755 YgdL_like Family of ac 79.5 12 0.00026 32.9 8.3 42 133-174 9-51 (231)
379 PRK08703 short chain dehydroge 79.5 36 0.00078 29.2 11.4 47 133-180 4-52 (239)
380 cd08295 double_bond_reductase_ 79.2 10 0.00022 34.8 8.2 101 130-246 147-250 (338)
381 TIGR02825 B4_12hDH leukotriene 79.1 9.7 0.00021 34.7 8.0 102 129-247 133-237 (325)
382 PRK05708 2-dehydropantoate 2-r 78.3 14 0.00031 33.7 8.8 39 136-176 3-43 (305)
383 PRK05786 fabG 3-ketoacyl-(acyl 78.1 39 0.00085 28.8 11.2 78 134-218 4-91 (238)
384 PF11899 DUF3419: Protein of u 77.8 8 0.00017 36.7 7.0 59 115-180 20-79 (380)
385 PRK08213 gluconate 5-dehydroge 77.7 46 0.00099 29.0 11.7 79 133-217 10-98 (259)
386 COG0863 DNA modification methy 77.2 9.9 0.00021 34.2 7.4 60 120-182 209-268 (302)
387 PRK08328 hypothetical protein; 77.2 6.3 0.00014 34.6 5.8 36 133-168 25-61 (231)
388 PRK07688 thiamine/molybdopteri 76.9 6.2 0.00013 36.9 6.0 35 133-168 22-58 (339)
389 cd08301 alcohol_DH_plants Plan 76.9 6 0.00013 36.9 6.0 47 130-176 183-230 (369)
390 TIGR01963 PHB_DH 3-hydroxybuty 76.6 38 0.00082 29.2 10.8 77 135-217 1-87 (255)
391 PRK08223 hypothetical protein; 76.5 2.4 5.1E-05 38.6 3.0 45 133-178 25-71 (287)
392 cd08300 alcohol_DH_class_III c 76.2 6.7 0.00014 36.7 6.1 46 130-175 182-228 (368)
393 PF00107 ADH_zinc_N: Zinc-bind 75.6 3 6.5E-05 32.4 3.1 85 144-249 1-91 (130)
394 cd08285 NADP_ADH NADP(H)-depen 75.6 9.3 0.0002 35.2 6.9 103 130-247 162-266 (351)
395 PRK08762 molybdopterin biosynt 75.6 5.6 0.00012 37.6 5.4 35 133-167 133-168 (376)
396 PRK12429 3-hydroxybutyrate deh 75.3 45 0.00097 28.8 10.9 78 134-217 3-90 (258)
397 PRK07666 fabG 3-ketoacyl-(acyl 75.2 49 0.0011 28.3 11.0 78 134-217 6-93 (239)
398 PF06859 Bin3: Bicoid-interact 75.2 1.4 3.1E-05 34.0 1.0 38 208-248 1-44 (110)
399 PLN02586 probable cinnamyl alc 75.1 15 0.00033 34.2 8.2 37 132-169 181-218 (360)
400 cd08277 liver_alcohol_DH_like 75.0 7.3 0.00016 36.4 6.0 47 130-176 180-227 (365)
401 PRK06181 short chain dehydroge 74.9 45 0.00097 29.1 10.8 77 136-218 2-88 (263)
402 PRK06914 short chain dehydroge 74.8 59 0.0013 28.6 11.7 80 134-217 2-90 (280)
403 PRK08251 short chain dehydroge 74.8 54 0.0012 28.2 11.6 78 135-216 2-89 (248)
404 cd00757 ThiF_MoeB_HesA_family 74.5 6 0.00013 34.6 5.0 36 133-168 19-55 (228)
405 PRK05597 molybdopterin biosynt 74.5 6.7 0.00014 36.9 5.6 36 133-168 26-62 (355)
406 PRK08339 short chain dehydroge 74.4 44 0.00095 29.4 10.7 79 133-216 6-93 (263)
407 TIGR02819 fdhA_non_GSH formald 74.4 12 0.00026 35.5 7.4 47 130-176 181-228 (393)
408 PRK07454 short chain dehydroge 74.1 56 0.0012 28.0 11.3 79 134-218 5-93 (241)
409 PRK07326 short chain dehydroge 73.2 52 0.0011 28.1 10.6 77 134-217 5-91 (237)
410 PRK05565 fabG 3-ketoacyl-(acyl 72.9 59 0.0013 27.8 11.2 79 133-217 3-92 (247)
411 PRK09291 short chain dehydroge 72.2 64 0.0014 27.9 11.2 76 135-216 2-81 (257)
412 KOG1098 Putative SAM-dependent 72.0 5.5 0.00012 39.8 4.4 58 109-168 21-79 (780)
413 PLN02514 cinnamyl-alcohol dehy 71.9 25 0.00055 32.6 8.9 95 133-247 179-275 (357)
414 PRK05703 flhF flagellar biosyn 71.9 49 0.0011 31.9 10.9 125 134-267 220-360 (424)
415 KOG2811 Uncharacterized conser 71.8 14 0.00031 34.7 6.8 35 134-168 182-219 (420)
416 PF05430 Methyltransf_30: S-ad 71.8 15 0.00033 29.0 6.2 63 206-276 48-114 (124)
417 PF03269 DUF268: Caenorhabditi 71.4 36 0.00077 28.4 8.3 99 135-249 2-113 (177)
418 PTZ00357 methyltransferase; Pr 71.3 38 0.00082 34.8 9.9 101 137-237 703-823 (1072)
419 KOG0725 Reductases with broad 70.9 80 0.0017 28.4 12.3 84 131-218 4-99 (270)
420 cd08231 MDR_TM0436_like Hypoth 70.4 17 0.00037 33.7 7.3 99 134-247 177-280 (361)
421 cd08242 MDR_like Medium chain 70.3 47 0.001 29.9 10.1 87 131-239 152-239 (319)
422 PRK09590 celB cellobiose phosp 70.3 34 0.00073 26.1 7.6 73 137-239 3-75 (104)
423 TIGR01692 HIBADH 3-hydroxyisob 69.9 25 0.00053 31.8 8.1 106 144-270 3-113 (288)
424 cd08298 CAD2 Cinnamyl alcohol 69.8 58 0.0013 29.4 10.6 92 130-246 163-255 (329)
425 PRK08945 putative oxoacyl-(acy 69.8 72 0.0016 27.5 12.0 49 131-180 8-58 (247)
426 PRK07774 short chain dehydroge 69.3 73 0.0016 27.3 11.0 80 133-218 4-93 (250)
427 cd08238 sorbose_phosphate_red 69.2 11 0.00024 35.9 5.8 47 131-177 172-222 (410)
428 PRK05866 short chain dehydroge 69.0 80 0.0017 28.4 11.3 80 133-218 38-127 (293)
429 TIGR00507 aroE shikimate 5-deh 69.0 86 0.0019 28.0 11.4 117 132-268 114-233 (270)
430 PRK06194 hypothetical protein; 68.8 83 0.0018 27.8 11.3 80 133-218 4-93 (287)
431 cd08279 Zn_ADH_class_III Class 68.7 15 0.00033 34.1 6.6 103 130-247 178-282 (363)
432 COG1179 Dinucleotide-utilizing 68.7 3.7 8.1E-05 36.3 2.2 84 132-215 27-128 (263)
433 PRK07063 short chain dehydroge 68.1 81 0.0018 27.4 11.3 81 133-217 5-95 (260)
434 PRK05690 molybdopterin biosynt 68.0 3.8 8.3E-05 36.3 2.3 36 133-168 30-66 (245)
435 cd05278 FDH_like Formaldehyde 67.8 12 0.00027 34.2 5.7 101 131-246 164-266 (347)
436 PRK09242 tropinone reductase; 67.8 82 0.0018 27.3 11.3 81 133-217 7-97 (257)
437 PRK05600 thiamine biosynthesis 67.7 14 0.0003 35.0 6.1 36 133-168 39-75 (370)
438 cd01483 E1_enzyme_family Super 67.6 54 0.0012 26.0 8.8 30 137-167 1-32 (143)
439 PRK07062 short chain dehydroge 67.5 85 0.0018 27.4 11.6 82 133-218 6-97 (265)
440 KOG1201 Hydroxysteroid 17-beta 67.4 16 0.00034 33.4 6.0 78 131-216 34-122 (300)
441 TIGR02355 moeB molybdopterin s 67.2 3.3 7.1E-05 36.7 1.7 41 134-174 23-64 (240)
442 PRK07109 short chain dehydroge 67.0 87 0.0019 28.8 11.3 79 133-217 6-94 (334)
443 PLN02819 lysine-ketoglutarate 67.0 45 0.00097 36.0 10.2 124 134-276 568-707 (1042)
444 PRK06139 short chain dehydroge 66.7 72 0.0016 29.4 10.6 79 133-217 5-93 (330)
445 PRK08085 gluconate 5-dehydroge 66.6 86 0.0019 27.1 11.5 80 133-218 7-96 (254)
446 cd08282 PFDH_like Pseudomonas 66.4 24 0.00052 33.0 7.5 45 131-175 173-218 (375)
447 PRK12829 short chain dehydroge 66.4 75 0.0016 27.5 10.3 78 132-217 8-95 (264)
448 PRK08267 short chain dehydroge 66.2 59 0.0013 28.3 9.6 74 136-217 2-86 (260)
449 TIGR03206 benzo_BadH 2-hydroxy 66.0 86 0.0019 26.9 11.3 78 134-217 2-89 (250)
450 KOG0023 Alcohol dehydrogenase, 65.8 13 0.00028 34.5 5.1 43 131-174 178-221 (360)
451 COG0604 Qor NADPH:quinone redu 65.7 1.1E+02 0.0025 28.2 11.8 101 130-247 138-241 (326)
452 PRK07097 gluconate 5-dehydroge 65.6 93 0.002 27.2 11.7 80 133-218 8-97 (265)
453 PRK06138 short chain dehydroge 64.3 71 0.0015 27.4 9.7 79 133-218 3-91 (252)
454 KOG0821 Predicted ribosomal RN 64.2 12 0.00026 32.8 4.4 59 121-180 37-95 (326)
455 PRK13394 3-hydroxybutyrate deh 64.2 78 0.0017 27.4 10.0 80 133-218 5-94 (262)
456 PRK07411 hypothetical protein; 63.5 3.8 8.2E-05 39.0 1.4 42 134-176 37-80 (390)
457 PRK06522 2-dehydropantoate 2-r 63.2 98 0.0021 27.7 10.7 91 137-239 2-94 (304)
458 PRK05650 short chain dehydroge 63.2 96 0.0021 27.2 10.5 75 137-217 2-86 (270)
459 PLN00203 glutamyl-tRNA reducta 63.1 47 0.001 33.0 9.0 45 133-177 264-309 (519)
460 PF02558 ApbA: Ketopantoate re 62.7 8 0.00017 31.0 3.1 107 139-261 2-114 (151)
461 PRK03659 glutathione-regulated 62.7 65 0.0014 32.6 10.1 66 137-215 402-471 (601)
462 PRK07878 molybdopterin biosynt 62.0 5.3 0.00011 38.1 2.1 42 134-176 41-84 (392)
463 PRK15116 sulfur acceptor prote 61.9 1.2E+02 0.0027 27.3 12.3 39 132-170 27-66 (268)
464 COG5379 BtaA S-adenosylmethion 61.8 20 0.00044 32.8 5.6 60 115-180 48-107 (414)
465 cd08278 benzyl_alcohol_DH Benz 61.7 21 0.00046 33.2 6.2 97 131-247 183-285 (365)
466 TIGR02853 spore_dpaA dipicolin 61.6 51 0.0011 29.9 8.4 114 132-272 148-262 (287)
467 PF03435 Saccharop_dh: Sacchar 61.5 20 0.00043 33.8 5.9 73 138-219 1-78 (386)
468 COG4017 Uncharacterized protei 61.5 15 0.00032 31.5 4.4 47 131-179 41-88 (254)
469 PF02737 3HCDH_N: 3-hydroxyacy 60.9 19 0.00041 30.2 5.1 92 138-239 2-108 (180)
470 TIGR00497 hsdM type I restrict 60.1 46 0.00099 32.8 8.4 50 134-183 217-270 (501)
471 COG2084 MmsB 3-hydroxyisobutyr 60.1 28 0.00061 31.7 6.3 108 144-272 7-120 (286)
472 PRK15182 Vi polysaccharide bio 60.1 64 0.0014 31.1 9.2 117 136-259 7-132 (425)
473 COG1250 FadB 3-hydroxyacyl-CoA 59.4 1.1E+02 0.0025 28.1 10.2 121 136-261 4-130 (307)
474 PRK14106 murD UDP-N-acetylmura 59.2 1.7E+02 0.0037 28.0 12.5 72 134-218 4-78 (450)
475 PLN02702 L-idonate 5-dehydroge 59.1 29 0.00062 32.2 6.5 104 129-247 176-285 (364)
476 PRK12550 shikimate 5-dehydroge 58.9 64 0.0014 29.1 8.4 111 134-268 121-235 (272)
477 PRK08306 dipicolinate synthase 58.7 40 0.00086 30.8 7.2 115 132-273 149-264 (296)
478 cd08260 Zn_ADH6 Alcohol dehydr 58.7 39 0.00085 30.9 7.3 101 131-247 162-264 (345)
479 COG0686 Ald Alanine dehydrogen 58.6 34 0.00073 31.7 6.5 93 136-239 169-262 (371)
480 PRK06249 2-dehydropantoate 2-r 58.5 73 0.0016 29.1 9.0 91 136-239 6-100 (313)
481 cd08299 alcohol_DH_class_I_II_ 58.5 26 0.00057 32.8 6.2 46 130-175 186-232 (373)
482 PRK08324 short chain dehydroge 57.9 1.3E+02 0.0029 30.8 11.6 80 132-218 419-508 (681)
483 PRK06949 short chain dehydroge 57.3 74 0.0016 27.5 8.6 79 133-217 7-95 (258)
484 cd05288 PGDH Prostaglandin deh 57.1 60 0.0013 29.2 8.2 101 131-247 142-244 (329)
485 PRK10083 putative oxidoreducta 57.0 40 0.00086 30.7 7.0 48 129-176 155-204 (339)
486 PRK06182 short chain dehydroge 57.0 1.4E+02 0.0029 26.2 10.4 39 134-173 2-42 (273)
487 cd01075 NAD_bind_Leu_Phe_Val_D 56.5 38 0.00083 28.9 6.4 63 110-176 5-69 (200)
488 PRK14852 hypothetical protein; 56.3 13 0.00028 39.5 3.9 44 133-177 330-375 (989)
489 cd01485 E1-1_like Ubiquitin ac 56.2 12 0.00027 31.9 3.2 35 134-168 18-53 (198)
490 PF05575 V_cholerae_RfbT: Vibr 56.0 9.6 0.00021 31.8 2.4 58 124-183 71-128 (286)
491 cd08296 CAD_like Cinnamyl alco 55.8 39 0.00085 30.8 6.8 99 131-247 160-259 (333)
492 PRK09599 6-phosphogluconate de 55.7 1.1E+02 0.0025 27.6 9.7 115 138-272 3-119 (301)
493 PRK12490 6-phosphogluconate de 55.4 91 0.002 28.3 9.0 111 140-270 5-117 (299)
494 PF05711 TylF: Macrocin-O-meth 55.2 29 0.00062 30.9 5.4 131 133-271 74-236 (248)
495 PRK07530 3-hydroxybutyryl-CoA 55.1 43 0.00094 30.2 6.8 94 136-239 5-113 (292)
496 PTZ00245 ubiquitin activating 55.1 1E+02 0.0022 27.9 8.7 45 133-178 24-70 (287)
497 COG1893 ApbA Ketopantoate redu 54.8 83 0.0018 28.9 8.6 91 136-239 1-95 (307)
498 COG3392 Adenine-specific DNA m 54.7 9.1 0.0002 34.3 2.1 45 120-166 8-57 (330)
499 PRK09422 ethanol-active dehydr 54.6 39 0.00084 30.7 6.6 46 130-175 158-204 (338)
500 PRK07066 3-hydroxybutyryl-CoA 54.6 1.8E+02 0.0039 26.9 11.0 114 136-262 8-132 (321)
No 1
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.6e-42 Score=276.37 Aligned_cols=198 Identities=41% Similarity=0.721 Sum_probs=178.3
Q ss_pred ccCCCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCC-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCC
Q 021691 106 NIDNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSG-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGA 184 (309)
Q Consensus 106 ~~~~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~ 184 (309)
++||||++|+||+++.||.+++..+..++|++|||||.| +|+.|+++|...+...|..||++++.++++++-+-.|...
T Consensus 1 gfdntgnvciwpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s 80 (201)
T KOG3201|consen 1 GFDNTGNVCIWPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMAS 80 (201)
T ss_pred CcCCCCcEEecccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccccc
Confidence 379999999999999999999999999999999999999 7999999999989999999999999999999988888442
Q ss_pred CCCCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhC
Q 021691 185 FGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGN 264 (309)
Q Consensus 185 ~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~ 264 (309)
+..++.+..++|......+...+||+|+|+||+|+.+.+++|+++++++|+|.| .+++++|+|++++++|.+.+...
T Consensus 81 -~~tsc~vlrw~~~~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g--~Al~fsPRRg~sL~kF~de~~~~ 157 (201)
T KOG3201|consen 81 -SLTSCCVLRWLIWGAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSG--RALLFSPRRGQSLQKFLDEVGTV 157 (201)
T ss_pred -ccceehhhHHHHhhhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCccc--ceeEecCcccchHHHHHHHHHhc
Confidence 234454555555444444456799999999999999999999999999999999 69999999999999999999999
Q ss_pred CCeEEEEeccCchhhhhhhccccCCCCCCCCCCCCCcceEEEec
Q 021691 265 HLHFSIIENYNAEIWKRHQMLMSGDESWPNYDKDHCYPFLVRIT 308 (309)
Q Consensus 265 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~yp~l~~~~ 308 (309)
||.+...++|+..+|++|..+..++. +.|++++|||+|++||
T Consensus 158 gf~v~l~enyde~iwqrh~~Lkk~~e--~~ydenlhypllLqLt 199 (201)
T KOG3201|consen 158 GFTVCLEENYDEAIWQRHGRLKKGDE--PNYDENLHYPLLLQLT 199 (201)
T ss_pred eeEEEecccHhHHHHHHHHHHhcCCC--ccccccccchhhhhhh
Confidence 99999999999999999999999875 7799999999999987
No 2
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.95 E-value=1.2e-27 Score=201.88 Aligned_cols=153 Identities=36% Similarity=0.557 Sum_probs=105.1
Q ss_pred cCCCCceeecccHHHHHHHHhhC------cCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHh
Q 021691 107 IDNTGLVCHWPSEDVLAFFSLSH------ADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDA 180 (309)
Q Consensus 107 ~~~tG~~~~W~sa~~La~~l~~~------~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~ 180 (309)
.+.||.. +||++.+|++|+..+ ...+++++|||||||+|++|+.+|+..++.+|++||.++ +++.++.|++.
T Consensus 13 ~~~~G~~-vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~ 90 (173)
T PF10294_consen 13 GDGTGGK-VWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIEL 90 (173)
T ss_dssp -----------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHT
T ss_pred ccCCcEE-EechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHh
Confidence 3588987 999999999999994 567899999999999999999998876788999999998 99999999999
Q ss_pred ccCCCCCCceEEEEeeCCCCCCC--CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHH
Q 021691 181 NSGAFGGTTVKSMTLHWNQDDFP--YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFL 258 (309)
Q Consensus 181 n~~~~~~~~v~~~~l~w~~~~~~--~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~ 258 (309)
|+. ....++.+..++|++.... ....+||+|+++||+|+.+.++.|++++.++++++|. ++++.+.|..+...|+
T Consensus 91 N~~-~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~--vl~~~~~R~~~~~~F~ 167 (173)
T PF10294_consen 91 NGS-LLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGK--VLLAYKRRRKSEQEFF 167 (173)
T ss_dssp T---------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TT--EEEEEE-S-TGGCHHH
T ss_pred ccc-cccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCE--EEEEeCEecHHHHHHH
Confidence 983 2246889999999974311 1235899999999999999999999999999999994 8888888888888999
Q ss_pred HHHHhC
Q 021691 259 EEIEGN 264 (309)
Q Consensus 259 ~~~~~~ 264 (309)
+.++++
T Consensus 168 ~~~~k~ 173 (173)
T PF10294_consen 168 DRLKKH 173 (173)
T ss_dssp HHH---
T ss_pred HHhhhC
Confidence 998763
No 3
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=99.71 E-value=4e-17 Score=135.87 Aligned_cols=135 Identities=27% Similarity=0.306 Sum_probs=110.3
Q ss_pred eecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEE
Q 021691 114 CHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSM 193 (309)
Q Consensus 114 ~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~ 193 (309)
+.|.+++.||+|+..+++.++||+|||+|+|+|+++++.|+ .|+..|+++|+.|..+++++.|++.|+.. +.+.
T Consensus 59 ~~WagG~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~-aGA~~v~a~d~~P~~~~ai~lNa~angv~-----i~~~ 132 (218)
T COG3897 59 FAWAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAAR-AGAAEVVAADIDPWLEQAIRLNAAANGVS-----ILFT 132 (218)
T ss_pred HHHhhhHHHHHHHhcCccccccceeeecccccChHHHHHHH-hhhHHHHhcCCChHHHHHhhcchhhccce-----eEEe
Confidence 48999999999999999999999999999999999999665 58889999999999999999999999863 4443
Q ss_pred EeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHH
Q 021691 194 TLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEI 261 (309)
Q Consensus 194 ~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~ 261 (309)
..+-. .....||+|+++|++|.......++....++...|- .+++.++.|+.-..+-++.+
T Consensus 133 ~~d~~-----g~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g~--~vlvgdp~R~~lpk~~l~~~ 193 (218)
T COG3897 133 HADLI-----GSPPAFDLLLAGDLFYNHTEADRLIPWKDRLAEAGA--AVLVGDPGRAYLPKKRLEFL 193 (218)
T ss_pred ecccc-----CCCcceeEEEeeceecCchHHHHHHHHHHHHHhCCC--EEEEeCCCCCCCchhhhhhh
Confidence 33222 134679999999999999999999996666665555 67788999876554433333
No 4
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.68 E-value=7.4e-16 Score=135.08 Aligned_cols=145 Identities=25% Similarity=0.329 Sum_probs=117.1
Q ss_pred cHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeC
Q 021691 118 SEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHW 197 (309)
Q Consensus 118 sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w 197 (309)
-+..|+.|+.-. ..++|||||||+|++++++|++.+..+++++|+++++.+.|++|++.|++. .++++...|.
T Consensus 32 DaiLL~~~~~~~----~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~---~ri~v~~~Di 104 (248)
T COG4123 32 DAILLAAFAPVP----KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLE---ERIQVIEADI 104 (248)
T ss_pred HHHHHHhhcccc----cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcch---hceeEehhhH
Confidence 357788887432 378999999999999999999977789999999999999999999999984 5777777766
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCcc------------------cHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHH
Q 021691 198 NQDDFPYIVDTFDVIVASDCTFFKE------------------FHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLE 259 (309)
Q Consensus 198 ~~~~~~~~~~~fDvIi~~d~ly~~~------------------~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~ 259 (309)
.+........+||+|+|+.++|... .++++++...++||++| .+.+. .|++.+.++.+
T Consensus 105 ~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G--~l~~V--~r~erl~ei~~ 180 (248)
T COG4123 105 KEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGG--RLAFV--HRPERLAEIIE 180 (248)
T ss_pred HHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCC--EEEEE--ecHHHHHHHHH
Confidence 5544444445799999988877632 37889999999999999 33332 36778889999
Q ss_pred HHHhCCCeEEEEec
Q 021691 260 EIEGNHLHFSIIEN 273 (309)
Q Consensus 260 ~~~~~G~~~~~~~~ 273 (309)
.+++.+|....+..
T Consensus 181 ~l~~~~~~~k~i~~ 194 (248)
T COG4123 181 LLKSYNLEPKRIQF 194 (248)
T ss_pred HHHhcCCCceEEEE
Confidence 99999998877654
No 5
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.67 E-value=1.8e-15 Score=127.25 Aligned_cols=119 Identities=22% Similarity=0.271 Sum_probs=93.7
Q ss_pred ccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEee
Q 021691 117 PSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLH 196 (309)
Q Consensus 117 ~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~ 196 (309)
+++..|++++... .+++|||+|||+|.+++.+++..+..+|+++|+++.+++.+++|++.|+.. .+.+...|
T Consensus 18 ~~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~----~v~~~~~d 89 (170)
T PF05175_consen 18 AGTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLE----NVEVVQSD 89 (170)
T ss_dssp HHHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCT----TEEEEESS
T ss_pred HHHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcc----cccccccc
Confidence 4567788888765 578999999999999999999877778999999999999999999999984 26776666
Q ss_pred CCCCCCCCCCCCccEEEEcCCCCCcc-----cHHHHHHHHHHHHhcCCCeEEEEEee
Q 021691 197 WNQDDFPYIVDTFDVIVASDCTFFKE-----FHKDLARIIKFLLKKVGPSEALFFSP 248 (309)
Q Consensus 197 w~~~~~~~~~~~fDvIi~~d~ly~~~-----~~~~ll~~l~~lLk~~G~~~~ii~~~ 248 (309)
+-+.. ...+||+|+++.+++... ....+++...++|+++| .+++...
T Consensus 90 ~~~~~---~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G--~l~lv~~ 141 (170)
T PF05175_consen 90 LFEAL---PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGG--RLFLVIN 141 (170)
T ss_dssp TTTTC---CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEE--EEEEEEE
T ss_pred ccccc---cccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCC--EEEEEee
Confidence 54322 257899999998877654 36889999999999999 5544433
No 6
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.65 E-value=1.2e-15 Score=118.78 Aligned_cols=106 Identities=20% Similarity=0.282 Sum_probs=84.4
Q ss_pred CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691 134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV 213 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi 213 (309)
+|.+|||||||+|..++.+++..++.+|+++|.++++++.+++++...+. ..++++...++ . .......+||+|+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~---~~~i~~~~~d~-~-~~~~~~~~~D~v~ 75 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL---SDRITFVQGDA-E-FDPDFLEPFDLVI 75 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT---TTTEEEEESCC-H-GGTTTSSCEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC---CCCeEEEECcc-c-cCcccCCCCCEEE
Confidence 57899999999999999999976788999999999999999999966655 35788888777 1 1122345799999
Q ss_pred EcC-CCCC---cccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691 214 ASD-CTFF---KEFHKDLARIIKFLLKKVGPSEALFF 246 (309)
Q Consensus 214 ~~d-~ly~---~~~~~~ll~~l~~lLk~~G~~~~ii~ 246 (309)
+.. +.++ .+....+++.++++|+||| .+++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG--~lvi~ 110 (112)
T PF12847_consen 76 CSGFTLHFLLPLDERRRVLERIRRLLKPGG--RLVIN 110 (112)
T ss_dssp ECSGSGGGCCHHHHHHHHHHHHHHHEEEEE--EEEEE
T ss_pred ECCCccccccchhHHHHHHHHHHHhcCCCc--EEEEE
Confidence 988 3321 2567889999999999999 55543
No 7
>PLN02244 tocopherol O-methyltransferase
Probab=99.64 E-value=1.3e-14 Score=135.11 Aligned_cols=149 Identities=15% Similarity=0.114 Sum_probs=113.1
Q ss_pred HHHHHHHhhCcCc-----CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691 120 DVLAFFSLSHADM-----FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT 194 (309)
Q Consensus 120 ~~La~~l~~~~~~-----~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ 194 (309)
..+.+.+.....+ .++++|||+|||+|..+..+++.. +.+|+++|+++.+++.+++++..++.. .++.+..
T Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~---~~v~~~~ 174 (340)
T PLN02244 99 IRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLS---DKVSFQV 174 (340)
T ss_pred HHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCC---CceEEEE
Confidence 3344445444333 578899999999999999998876 569999999999999999998887762 3566666
Q ss_pred eeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC-----C------------------
Q 021691 195 LHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR-----G------------------ 251 (309)
Q Consensus 195 l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r-----~------------------ 251 (309)
.|..+ .+..+++||+|++..++++..+...+++.+.++|+||| .+++.+... .
T Consensus 175 ~D~~~--~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG--~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ 250 (340)
T PLN02244 175 ADALN--QPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGG--RIIIVTWCHRDLEPGETSLKPDEQKLLDKICAA 250 (340)
T ss_pred cCccc--CCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCc--EEEEEEecccccccccccCCHHHHHHHHHHHhh
Confidence 55433 34456799999999999999899999999999999999 555543110 0
Q ss_pred ------chHHHHHHHHHhCCCeEEEEeccCc
Q 021691 252 ------DSLDKFLEEIEGNHLHFSIIENYNA 276 (309)
Q Consensus 252 ------~~~~~f~~~~~~~G~~~~~~~~~~~ 276 (309)
.+.+++.+.++++||....++.+..
T Consensus 251 ~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s~ 281 (340)
T PLN02244 251 YYLPAWCSTSDYVKLAESLGLQDIKTEDWSE 281 (340)
T ss_pred ccCCCCCCHHHHHHHHHHCCCCeeEeeeCcH
Confidence 1345777889999999877776554
No 8
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=7.4e-15 Score=132.05 Aligned_cols=147 Identities=24% Similarity=0.201 Sum_probs=106.5
Q ss_pred cCCCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCC
Q 021691 107 IDNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFG 186 (309)
Q Consensus 107 ~~~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~ 186 (309)
|| ||.. |....-.+++.+.. .+|++|||+|||+|.++++.++ +|+.+|+|+|++|.+++.++.|++.|+...
T Consensus 141 FG-TG~H---pTT~lcL~~Le~~~--~~g~~vlDvGcGSGILaIAa~k-LGA~~v~g~DiDp~AV~aa~eNa~~N~v~~- 212 (300)
T COG2264 141 FG-TGTH---PTTSLCLEALEKLL--KKGKTVLDVGCGSGILAIAAAK-LGAKKVVGVDIDPQAVEAARENARLNGVEL- 212 (300)
T ss_pred cC-CCCC---hhHHHHHHHHHHhh--cCCCEEEEecCChhHHHHHHHH-cCCceEEEecCCHHHHHHHHHHHHHcCCch-
Confidence 44 5654 55555555555433 3899999999999999999555 789999999999999999999999999842
Q ss_pred CCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCC
Q 021691 187 GTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHL 266 (309)
Q Consensus 187 ~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~ 266 (309)
.+.+... .........+||+|+++= + .+.+..|...+.++++|+| .++++.-... ..+.+.+.+.+.||
T Consensus 213 --~~~~~~~---~~~~~~~~~~~DvIVANI-L--A~vl~~La~~~~~~lkpgg--~lIlSGIl~~-q~~~V~~a~~~~gf 281 (300)
T COG2264 213 --LVQAKGF---LLLEVPENGPFDVIVANI-L--AEVLVELAPDIKRLLKPGG--RLILSGILED-QAESVAEAYEQAGF 281 (300)
T ss_pred --hhhcccc---cchhhcccCcccEEEehh-h--HHHHHHHHHHHHHHcCCCc--eEEEEeehHh-HHHHHHHHHHhCCC
Confidence 1111111 111111235899999953 2 4456788999999999999 5666554443 36788899999999
Q ss_pred eEEEEe
Q 021691 267 HFSIIE 272 (309)
Q Consensus 267 ~~~~~~ 272 (309)
.+..+.
T Consensus 282 ~v~~~~ 287 (300)
T COG2264 282 EVVEVL 287 (300)
T ss_pred eEeEEE
Confidence 986654
No 9
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.63 E-value=3.8e-15 Score=134.96 Aligned_cols=143 Identities=22% Similarity=0.242 Sum_probs=101.4
Q ss_pred ccCCCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCC
Q 021691 106 NIDNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAF 185 (309)
Q Consensus 106 ~~~~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~ 185 (309)
.|| ||.+ |....-.+++... ..+|++|||+|||+|.+++++++ +|+.+|+++|++|.+++.+++|+..|++.
T Consensus 139 AFG-TG~H---~TT~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~k-lGA~~v~a~DiDp~Av~~a~~N~~~N~~~- 210 (295)
T PF06325_consen 139 AFG-TGHH---PTTRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAK-LGAKKVVAIDIDPLAVEAARENAELNGVE- 210 (295)
T ss_dssp SS--SSHC---HHHHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHH-TTBSEEEEEESSCHHHHHHHHHHHHTT-T-
T ss_pred ccc-CCCC---HHHHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHH-cCCCeEEEecCCHHHHHHHHHHHHHcCCC-
Confidence 344 4554 6666666666554 45789999999999999999655 68899999999999999999999999985
Q ss_pred CCCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCC
Q 021691 186 GGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNH 265 (309)
Q Consensus 186 ~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G 265 (309)
.++.+. . .......+||+|+++-. ...+..++..+.++|+++| .++++.-.. ...+.+.+.+++ |
T Consensus 211 --~~~~v~----~--~~~~~~~~~dlvvANI~---~~vL~~l~~~~~~~l~~~G--~lIlSGIl~-~~~~~v~~a~~~-g 275 (295)
T PF06325_consen 211 --DRIEVS----L--SEDLVEGKFDLVVANIL---ADVLLELAPDIASLLKPGG--YLILSGILE-EQEDEVIEAYKQ-G 275 (295)
T ss_dssp --TCEEES----C--TSCTCCS-EEEEEEES----HHHHHHHHHHCHHHEEEEE--EEEEEEEEG-GGHHHHHHHHHT-T
T ss_pred --eeEEEE----E--ecccccccCCEEEECCC---HHHHHHHHHHHHHhhCCCC--EEEEccccH-HHHHHHHHHHHC-C
Confidence 344332 1 11223489999999622 3455678888999999999 555554444 455778888876 9
Q ss_pred CeEEEE
Q 021691 266 LHFSII 271 (309)
Q Consensus 266 ~~~~~~ 271 (309)
|.+...
T Consensus 276 ~~~~~~ 281 (295)
T PF06325_consen 276 FELVEE 281 (295)
T ss_dssp EEEEEE
T ss_pred CEEEEE
Confidence 987543
No 10
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.62 E-value=2e-14 Score=121.92 Aligned_cols=130 Identities=16% Similarity=0.261 Sum_probs=98.4
Q ss_pred cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691 132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV 211 (309)
Q Consensus 132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv 211 (309)
..++++|||+|||+|..++.+++.. .+|+++|.++++++.+++|+..++. .+.+...|+... ..++||+
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~d~~~~----~~~~fD~ 85 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKG--KCILTTDINPFAVKELRENAKLNNV-----GLDVVMTDLFKG----VRGKFDV 85 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCC-----ceEEEEcccccc----cCCcccE
Confidence 3456799999999999999988763 3899999999999999999998865 345555554332 2358999
Q ss_pred EEEcCCCCCccc---------------------HHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEE
Q 021691 212 IVASDCTFFKEF---------------------HKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSI 270 (309)
Q Consensus 212 Ii~~d~ly~~~~---------------------~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~ 270 (309)
|+++.+++.... +..+++.+.++|+++| .+++..... .....+.+.+++.||..+.
T Consensus 86 Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG--~~~~~~~~~-~~~~~~~~~l~~~gf~~~~ 162 (179)
T TIGR00537 86 ILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGG--RVQLIQSSL-NGEPDTFDKLDERGFRYEI 162 (179)
T ss_pred EEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCC--EEEEEEecc-CChHHHHHHHHhCCCeEEE
Confidence 999877654321 4678999999999999 555555433 2356788899999999988
Q ss_pred EeccC
Q 021691 271 IENYN 275 (309)
Q Consensus 271 ~~~~~ 275 (309)
+..+.
T Consensus 163 ~~~~~ 167 (179)
T TIGR00537 163 VAERG 167 (179)
T ss_pred EEEee
Confidence 76543
No 11
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.60 E-value=1.7e-14 Score=118.99 Aligned_cols=109 Identities=16% Similarity=0.248 Sum_probs=91.0
Q ss_pred CCCeEEEeCCCCChhhHHHH-HhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691 134 RSKRVIELGSGYGLAGLVIA-ATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI 212 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la-~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI 212 (309)
++.+|||+|||+|..+..++ +..++.+|+++|.+++|++.++++++.++.. ++++...|+.+.+.. ..++||+|
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~----ni~~~~~d~~~l~~~-~~~~~D~I 77 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD----NIEFIQGDIEDLPQE-LEEKFDII 77 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST----TEEEEESBTTCGCGC-SSTTEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc----ccceEEeehhccccc-cCCCeeEE
Confidence 57899999999999999999 4566789999999999999999999988873 688888887763211 12789999
Q ss_pred EEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeec
Q 021691 213 VASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK 249 (309)
Q Consensus 213 i~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~ 249 (309)
+++.++++..+...+++.+.++|+++| .+++....
T Consensus 78 ~~~~~l~~~~~~~~~l~~~~~~lk~~G--~~i~~~~~ 112 (152)
T PF13847_consen 78 ISNGVLHHFPDPEKVLKNIIRLLKPGG--ILIISDPN 112 (152)
T ss_dssp EEESTGGGTSHHHHHHHHHHHHEEEEE--EEEEEEEE
T ss_pred EEcCchhhccCHHHHHHHHHHHcCCCc--EEEEEECC
Confidence 999999999999999999999999999 55555544
No 12
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.60 E-value=6e-14 Score=119.54 Aligned_cols=123 Identities=20% Similarity=0.233 Sum_probs=97.2
Q ss_pred CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691 134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV 213 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi 213 (309)
++++|||+|||+|..++.+++..++.+|+++|.++++++.++++++.++.. ++++...+..+. .. .++||+|+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~----~i~~~~~d~~~~--~~-~~~fDlV~ 117 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK----NVTVVHGRAEEF--GQ-EEKFDVVT 117 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC----CEEEEeccHhhC--CC-CCCccEEE
Confidence 488999999999999999988777889999999999999999999999873 366666654432 22 56899999
Q ss_pred EcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEE
Q 021691 214 ASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSII 271 (309)
Q Consensus 214 ~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~ 271 (309)
+.. ...++.+++.+.++|+||| .+++... ......+.+..+..|+.+..+
T Consensus 118 ~~~----~~~~~~~l~~~~~~LkpGG--~lv~~~~--~~~~~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 118 SRA----VASLSDLVELCLPLLKPGG--RFLALKG--RDPEEEIAELPKALGGKVEEV 167 (187)
T ss_pred Ecc----ccCHHHHHHHHHHhcCCCe--EEEEEeC--CChHHHHHHHHHhcCceEeee
Confidence 964 2457889999999999999 5555443 345567788888889887544
No 13
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.59 E-value=8.3e-14 Score=125.10 Aligned_cols=113 Identities=12% Similarity=0.038 Sum_probs=86.2
Q ss_pred CcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCc
Q 021691 131 DMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTF 209 (309)
Q Consensus 131 ~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~f 209 (309)
...++.+|||+|||+|..+..+++..+ ..+|+++|.+++|++.++++....... ...++.+...+.. ..+..+++|
T Consensus 70 ~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~-~~~~i~~~~~d~~--~lp~~~~sf 146 (261)
T PLN02233 70 GAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS-CYKNIEWIEGDAT--DLPFDDCYF 146 (261)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhc-cCCCeEEEEcccc--cCCCCCCCE
Confidence 345688999999999999998888754 469999999999999998775421110 0124555555433 334556789
Q ss_pred cEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee
Q 021691 210 DVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP 248 (309)
Q Consensus 210 DvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~ 248 (309)
|+|+++.++++..+...+++++.++|+||| .+++...
T Consensus 147 D~V~~~~~l~~~~d~~~~l~ei~rvLkpGG--~l~i~d~ 183 (261)
T PLN02233 147 DAITMGYGLRNVVDRLKAMQEMYRVLKPGS--RVSILDF 183 (261)
T ss_pred eEEEEecccccCCCHHHHHHHHHHHcCcCc--EEEEEEC
Confidence 999999999999999999999999999999 5555543
No 14
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.59 E-value=2.1e-14 Score=125.82 Aligned_cols=128 Identities=16% Similarity=0.190 Sum_probs=102.2
Q ss_pred CCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCC
Q 021691 109 NTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGT 188 (309)
Q Consensus 109 ~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~ 188 (309)
+.|...+|.-..+-. + ...+|.+|||+|||||-.++.+++..+.++|+++|+|+.||+.+++.+..-+..
T Consensus 32 S~g~~~~Wr~~~i~~--~----~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~---- 101 (238)
T COG2226 32 SFGLHRLWRRALISL--L----GIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQ---- 101 (238)
T ss_pred cCcchHHHHHHHHHh--h----CCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCcc----
Confidence 456666888554432 2 222799999999999999999999988889999999999999999998876552
Q ss_pred ceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC
Q 021691 189 TVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR 250 (309)
Q Consensus 189 ~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r 250 (309)
.++....| .+..|+++++||+|.++-.+.+..+++..+++++|+||||| ++++....+
T Consensus 102 ~i~fv~~d--Ae~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG--~~~vle~~~ 159 (238)
T COG2226 102 NVEFVVGD--AENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGG--RLLVLEFSK 159 (238)
T ss_pred ceEEEEec--hhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCe--EEEEEEcCC
Confidence 24444443 45567888999999999999999999999999999999999 555555443
No 15
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.59 E-value=4e-15 Score=128.56 Aligned_cols=107 Identities=16% Similarity=0.160 Sum_probs=86.1
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI 212 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI 212 (309)
.+|++|||+|||.|.++..+|+. +++|+++|.++++|+.++.....+++... .....- ++.....++||+|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~-----y~~~~~--edl~~~~~~FDvV 128 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVNID-----YRQATV--EDLASAGGQFDVV 128 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhcccccc-----chhhhH--HHHHhcCCCccEE
Confidence 68999999999999999999886 58999999999999999999999887411 111100 1111223799999
Q ss_pred EEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC
Q 021691 213 VASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR 250 (309)
Q Consensus 213 i~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r 250 (309)
+|.+++.|.++.+.+++.+.+++||+| .+++++..|
T Consensus 129 ~cmEVlEHv~dp~~~~~~c~~lvkP~G--~lf~STinr 164 (243)
T COG2227 129 TCMEVLEHVPDPESFLRACAKLVKPGG--ILFLSTINR 164 (243)
T ss_pred EEhhHHHccCCHHHHHHHHHHHcCCCc--EEEEecccc
Confidence 999999999999999999999999999 555555544
No 16
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.59 E-value=9e-14 Score=122.43 Aligned_cols=109 Identities=11% Similarity=0.070 Sum_probs=86.9
Q ss_pred CcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCc
Q 021691 131 DMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTF 209 (309)
Q Consensus 131 ~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~f 209 (309)
.+.++++|||+|||+|..+..+++..+ ..+|+++|.++.+++.+++++..++. .++.+...+... .+...++|
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~v~~~~~d~~~--~~~~~~~f 115 (231)
T TIGR02752 42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL----HNVELVHGNAME--LPFDDNSF 115 (231)
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC----CceEEEEechhc--CCCCCCCc
Confidence 445688999999999999999888753 56999999999999999999877665 245554444332 23345789
Q ss_pred cEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 210 DVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 210 DvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
|+|+++.++++..+...+++.+.++|+||| .+++..
T Consensus 116 D~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG--~l~~~~ 151 (231)
T TIGR02752 116 DYVTIGFGLRNVPDYMQVLREMYRVVKPGG--KVVCLE 151 (231)
T ss_pred cEEEEecccccCCCHHHHHHHHHHHcCcCe--EEEEEE
Confidence 999999888888889999999999999999 555544
No 17
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.59 E-value=2.3e-14 Score=131.84 Aligned_cols=132 Identities=13% Similarity=0.155 Sum_probs=100.8
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI 212 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI 212 (309)
.+|.+|||+|||+|.++..+++. +.+|+++|.++++++.++.+...++.. .++.+...+.. +.+...++||+|
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~---~~i~~~~~dae--~l~~~~~~FD~V 202 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVT---STIEYLCTTAE--KLADEGRKFDAV 202 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcc---cceeEEecCHH--HhhhccCCCCEE
Confidence 57789999999999999988874 569999999999999999887665431 23444443322 223335689999
Q ss_pred EEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC----------------------------CchHHHHHHHHHhC
Q 021691 213 VASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR----------------------------GDSLDKFLEEIEGN 264 (309)
Q Consensus 213 i~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r----------------------------~~~~~~f~~~~~~~ 264 (309)
++.++++|..+...+++.+.++|+||| .+++.+..+ ..+.+++.+.++++
T Consensus 203 i~~~vLeHv~d~~~~L~~l~r~LkPGG--~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~a 280 (322)
T PLN02396 203 LSLEVIEHVANPAEFCKSLSALTIPNG--ATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRA 280 (322)
T ss_pred EEhhHHHhcCCHHHHHHHHHHHcCCCc--EEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHc
Confidence 999999999999999999999999999 555543211 12456788889999
Q ss_pred CCeEEEEec
Q 021691 265 HLHFSIIEN 273 (309)
Q Consensus 265 G~~~~~~~~ 273 (309)
||.+..+..
T Consensus 281 Gf~i~~~~G 289 (322)
T PLN02396 281 SVDVKEMAG 289 (322)
T ss_pred CCeEEEEee
Confidence 998876543
No 18
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=99.58 E-value=2.8e-14 Score=125.19 Aligned_cols=158 Identities=28% Similarity=0.392 Sum_probs=116.1
Q ss_pred CceeecccHHHHHHHHhhCcC------cCC-----CCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHH
Q 021691 111 GLVCHWPSEDVLAFFSLSHAD------MFR-----SKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVD 179 (309)
Q Consensus 111 G~~~~W~sa~~La~~l~~~~~------~~~-----g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~ 179 (309)
+.. +|+++..++.++..+.. -.. .++|||||+|||++|+.+|..+ ..+|+.+| .+..+..++.|..
T Consensus 53 ~~~-~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~-~~~v~ltD-~~~~~~~L~~~~~ 129 (248)
T KOG2793|consen 53 SAY-LWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLL-GAEVVLTD-LPKVVENLKFNRD 129 (248)
T ss_pred eeE-EeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHh-cceeccCC-chhhHHHHHHhhh
Confidence 344 89999999999887544 122 4469999999999999977754 56999999 5778888888877
Q ss_pred hccCCCC--CCceEEEEeeCCCCCCC-CCCCC-ccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCch--
Q 021691 180 ANSGAFG--GTTVKSMTLHWNQDDFP-YIVDT-FDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDS-- 253 (309)
Q Consensus 180 ~n~~~~~--~~~v~~~~l~w~~~~~~-~~~~~-fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~-- 253 (309)
.|+.... ...+.+..++|++.... ...+. ||+|+++||+|.++..+.++.+++.+|..++ .+++..+.|...
T Consensus 130 ~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~--~i~l~~~lr~~~~~ 207 (248)
T KOG2793|consen 130 KNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDG--TIFLAYPLRRDAAW 207 (248)
T ss_pred hhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCC--eEEEEEecccchHH
Confidence 7765432 23789999999987532 22334 9999999999999999999999999999998 666667766532
Q ss_pred -HHHHHHHHHhCCCeEEEEec
Q 021691 254 -LDKFLEEIEGNHLHFSIIEN 273 (309)
Q Consensus 254 -~~~f~~~~~~~G~~~~~~~~ 273 (309)
...++.......+++.....
T Consensus 208 ~~~~~~~~~~~~~~~v~~~~~ 228 (248)
T KOG2793|consen 208 EIEVLLFKKDLKIFDVVQESF 228 (248)
T ss_pred HHHHHHhhhhhccceeeeEec
Confidence 22222233334556554443
No 19
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.56 E-value=1e-13 Score=117.72 Aligned_cols=126 Identities=20% Similarity=0.214 Sum_probs=92.9
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI 212 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI 212 (309)
.+|++|||+|||+|..++.+|...+..+|+++|.++.|++.++++++.++.. ++++...+..+. ...++||+|
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~----~i~~i~~d~~~~---~~~~~fD~I 113 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN----NVEIVNGRAEDF---QHEEQFDVI 113 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC----CeEEEecchhhc---cccCCccEE
Confidence 3588999999999999999888777789999999999999999999888762 467766665432 124689999
Q ss_pred EEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHH---HHHHHHhCCCeEEEEec
Q 021691 213 VASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDK---FLEEIEGNHLHFSIIEN 273 (309)
Q Consensus 213 i~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~---f~~~~~~~G~~~~~~~~ 273 (309)
++.. + ..++.+++.+.++|++|| .+++.. +.....+ ..+.+...|+.......
T Consensus 114 ~s~~-~---~~~~~~~~~~~~~LkpgG--~lvi~~--~~~~~~~~~~~~e~~~~~~~~~~~~~~ 169 (181)
T TIGR00138 114 TSRA-L---ASLNVLLELTLNLLKVGG--YFLAYK--GKKYLDEIEEAKRKCQVLGVEPLEVPP 169 (181)
T ss_pred Eehh-h---hCHHHHHHHHHHhcCCCC--EEEEEc--CCCcHHHHHHHHHhhhhcCceEeeccc
Confidence 9854 2 356778899999999999 444443 3333333 33445557887655443
No 20
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.56 E-value=1.2e-13 Score=121.16 Aligned_cols=133 Identities=18% Similarity=0.185 Sum_probs=105.6
Q ss_pred CeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEc
Q 021691 136 KRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVAS 215 (309)
Q Consensus 136 ~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~ 215 (309)
++|||+|||+|..+..+++.++..+|+++|.++++++.+++++...++. .++.+...|..... . .++||+|++.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~---~~i~~~~~d~~~~~--~-~~~fD~I~~~ 74 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQ---GRIRIFYRDSAKDP--F-PDTYDLVFGF 74 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCC---cceEEEecccccCC--C-CCCCCEeehH
Confidence 5799999999999999998877779999999999999999999887763 45666666554332 1 3579999999
Q ss_pred CCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC--------------CchHHHHHHHHHhCCCeEEEEeccCc
Q 021691 216 DCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR--------------GDSLDKFLEEIEGNHLHFSIIENYNA 276 (309)
Q Consensus 216 d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r--------------~~~~~~f~~~~~~~G~~~~~~~~~~~ 276 (309)
.++++..+...+++.+.++|+|+| .+++..... ..+..++.+.+.++||.+........
T Consensus 75 ~~l~~~~~~~~~l~~~~~~LkpgG--~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~ 147 (224)
T smart00828 75 EVIHHIKDKMDLFSNISRHLKDGG--HLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDASL 147 (224)
T ss_pred HHHHhCCCHHHHHHHHHHHcCCCC--EEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEECcH
Confidence 999998889999999999999999 555544211 12456788899999999877665443
No 21
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.55 E-value=1.3e-13 Score=123.14 Aligned_cols=149 Identities=17% Similarity=0.182 Sum_probs=117.4
Q ss_pred ccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEee
Q 021691 117 PSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLH 196 (309)
Q Consensus 117 ~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~ 196 (309)
++...-.+.+.....+.+|++|||||||.|.+++.+|+.+ +.+|++++.|++..+.+++.+...|+. .++++...|
T Consensus 55 eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~---~~v~v~l~d 130 (283)
T COG2230 55 EAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLE---DNVEVRLQD 130 (283)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCC---cccEEEecc
Confidence 4444456667777889999999999999999999999988 569999999999999999999999984 578888887
Q ss_pred CCCCCCCCCCCCccEEEEcCCCCCccc--HHHHHHHHHHHHhcCCCeEEEEEeecCC---------------------ch
Q 021691 197 WNQDDFPYIVDTFDVIVASDCTFFKEF--HKDLARIIKFLLKKVGPSEALFFSPKRG---------------------DS 253 (309)
Q Consensus 197 w~~~~~~~~~~~fDvIi~~d~ly~~~~--~~~ll~~l~~lLk~~G~~~~ii~~~~r~---------------------~~ 253 (309)
|.+.. ++||-|++..++.+... .+.+++.++++|+++| .+++.+...+ .+
T Consensus 131 ~rd~~-----e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G--~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs 203 (283)
T COG2230 131 YRDFE-----EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGG--RMLLHSITGPDQEFRRFPDFIDKYIFPGGELPS 203 (283)
T ss_pred ccccc-----cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCc--eEEEEEecCCCcccccchHHHHHhCCCCCcCCC
Confidence 76443 45999999999988655 9999999999999999 4554442211 12
Q ss_pred HHHHHHHHHhCCCeEEEEeccCc
Q 021691 254 LDKFLEEIEGNHLHFSIIENYNA 276 (309)
Q Consensus 254 ~~~f~~~~~~~G~~~~~~~~~~~ 276 (309)
.....+...+.|+.+...+....
T Consensus 204 ~~~i~~~~~~~~~~v~~~~~~~~ 226 (283)
T COG2230 204 ISEILELASEAGFVVLDVESLRP 226 (283)
T ss_pred HHHHHHHHHhcCcEEehHhhhcH
Confidence 34455667788888877665443
No 22
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.55 E-value=2.8e-13 Score=115.59 Aligned_cols=133 Identities=17% Similarity=0.149 Sum_probs=97.9
Q ss_pred HhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCC
Q 021691 126 SLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYI 205 (309)
Q Consensus 126 l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~ 205 (309)
+.......++.+|||+|||+|.+++.+++..+..+|+++|.++.+++.+++|+..++.. ++++...+.. ...
T Consensus 23 ~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~----~i~~~~~d~~----~~~ 94 (187)
T PRK08287 23 ALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG----NIDIIPGEAP----IEL 94 (187)
T ss_pred HHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC----CeEEEecCch----hhc
Confidence 33333455788999999999999999998877789999999999999999999988762 3554443321 112
Q ss_pred CCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEe
Q 021691 206 VDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIE 272 (309)
Q Consensus 206 ~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~ 272 (309)
..+||+|+++... ..+..+++.+.++|+++| .+++ .........++.+.+++.||....+.
T Consensus 95 ~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~gG--~lv~-~~~~~~~~~~~~~~l~~~g~~~~~~~ 155 (187)
T PRK08287 95 PGKADAIFIGGSG---GNLTAIIDWSLAHLHPGG--RLVL-TFILLENLHSALAHLEKCGVSELDCV 155 (187)
T ss_pred CcCCCEEEECCCc---cCHHHHHHHHHHhcCCCe--EEEE-EEecHhhHHHHHHHHHHCCCCcceEE
Confidence 3579999996543 346778999999999999 4444 33334456778889999998654433
No 23
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.55 E-value=2.3e-13 Score=125.65 Aligned_cols=149 Identities=17% Similarity=0.164 Sum_probs=106.1
Q ss_pred ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691 115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT 194 (309)
Q Consensus 115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ 194 (309)
-|++...... +..+.....|++|||+|||+|..+..++.. ++..|+++|.++.++...+......+. ..++.+..
T Consensus 104 ew~s~~k~~~-l~~~l~~l~g~~VLDIGCG~G~~~~~la~~-g~~~V~GiD~S~~~l~q~~a~~~~~~~---~~~i~~~~ 178 (322)
T PRK15068 104 EWRSDWKWDR-VLPHLSPLKGRTVLDVGCGNGYHMWRMLGA-GAKLVVGIDPSQLFLCQFEAVRKLLGN---DQRAHLLP 178 (322)
T ss_pred eehHHhHHHH-HHHhhCCCCCCEEEEeccCCcHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHHHHhcCC---CCCeEEEe
Confidence 4776665443 333334567899999999999999988876 566899999999988765443322221 13466665
Q ss_pred eeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee------------c-C---------Cc
Q 021691 195 LHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP------------K-R---------GD 252 (309)
Q Consensus 195 l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~------------~-r---------~~ 252 (309)
.+.... +. .++||+|++..++||..+...+++.+++.|+||| .+++.+. . + -.
T Consensus 179 ~d~e~l--p~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG--~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lp 253 (322)
T PRK15068 179 LGIEQL--PA-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGG--ELVLETLVIDGDENTVLVPGDRYAKMRNVYFIP 253 (322)
T ss_pred CCHHHC--CC-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCc--EEEEEEEEecCCCccccCchhHHhcCccceeCC
Confidence 554332 23 5789999999999999999999999999999999 4544321 0 0 11
Q ss_pred hHHHHHHHHHhCCCeEEEEec
Q 021691 253 SLDKFLEEIEGNHLHFSIIEN 273 (309)
Q Consensus 253 ~~~~f~~~~~~~G~~~~~~~~ 273 (309)
+...+.+.++++||....+..
T Consensus 254 s~~~l~~~L~~aGF~~i~~~~ 274 (322)
T PRK15068 254 SVPALKNWLERAGFKDVRIVD 274 (322)
T ss_pred CHHHHHHHHHHcCCceEEEEe
Confidence 456788899999999766554
No 24
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.55 E-value=2.1e-13 Score=122.58 Aligned_cols=143 Identities=16% Similarity=0.110 Sum_probs=104.8
Q ss_pred HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691 120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ 199 (309)
Q Consensus 120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~ 199 (309)
..-...+.....+.++.+|||+|||+|..+..+++.. +.+|+++|+++.+++.++++.... .++.+...+...
T Consensus 38 ~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~------~~i~~~~~D~~~ 110 (263)
T PTZ00098 38 IEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDK------NKIEFEANDILK 110 (263)
T ss_pred hHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcC------CceEEEECCccc
Confidence 3334445555566788999999999999998888765 459999999999999999875431 245555555432
Q ss_pred CCCCCCCCCccEEEEcCCCCCcc--cHHHHHHHHHHHHhcCCCeEEEEEeecC--------------------CchHHHH
Q 021691 200 DDFPYIVDTFDVIVASDCTFFKE--FHKDLARIIKFLLKKVGPSEALFFSPKR--------------------GDSLDKF 257 (309)
Q Consensus 200 ~~~~~~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~lLk~~G~~~~ii~~~~r--------------------~~~~~~f 257 (309)
.+..+++||+|++.+++++.. +...+++.+.++|+||| .+++..... ..+...+
T Consensus 111 --~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG--~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (263)
T PTZ00098 111 --KDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNG--ILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEY 186 (263)
T ss_pred --CCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCc--EEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHH
Confidence 233457899999998877653 78899999999999999 555544211 1134567
Q ss_pred HHHHHhCCCeEEEEec
Q 021691 258 LEEIEGNHLHFSIIEN 273 (309)
Q Consensus 258 ~~~~~~~G~~~~~~~~ 273 (309)
.+.++++||.....+.
T Consensus 187 ~~~l~~aGF~~v~~~d 202 (263)
T PTZ00098 187 GDLIKSCNFQNVVAKD 202 (263)
T ss_pred HHHHHHCCCCeeeEEe
Confidence 7889999998876654
No 25
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.55 E-value=3.7e-14 Score=125.02 Aligned_cols=126 Identities=17% Similarity=0.185 Sum_probs=83.4
Q ss_pred CceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCc
Q 021691 111 GLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTT 189 (309)
Q Consensus 111 G~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~ 189 (309)
|....|.. .+.+.+ ...+|.+|||+|||||.++..+++..+ ..+|+++|.++.|++.+++++...+.. +
T Consensus 30 g~~~~wr~--~~~~~~----~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~----~ 99 (233)
T PF01209_consen 30 GQDRRWRR--KLIKLL----GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ----N 99 (233)
T ss_dssp -------S--HHHHHH----T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT------S
T ss_pred cHHHHHHH--HHHhcc----CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC----C
Confidence 44435765 333333 345688999999999999999888764 469999999999999999999887652 5
Q ss_pred eEEEEeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC
Q 021691 190 VKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR 250 (309)
Q Consensus 190 v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r 250 (309)
+.....|.. ..+..+++||+|+++..+++..+....++++.++||||| .+++....+
T Consensus 100 i~~v~~da~--~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG--~l~ile~~~ 156 (233)
T PF01209_consen 100 IEFVQGDAE--DLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGG--RLVILEFSK 156 (233)
T ss_dssp EEEEE-BTT--B--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEE--EEEEEEEEB
T ss_pred eeEEEcCHH--HhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCe--EEEEeeccC
Confidence 666665543 345667899999999999999999999999999999999 555555444
No 26
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.55 E-value=1.2e-13 Score=123.75 Aligned_cols=129 Identities=12% Similarity=0.142 Sum_probs=98.8
Q ss_pred CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691 134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV 213 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi 213 (309)
++.+|||+|||+|..+..+++. +.+|+++|++++|++.+++++...+.. .++++...+..+.. +...++||+|+
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~---~~v~~~~~d~~~l~-~~~~~~fD~V~ 117 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVS---DNMQFIHCAAQDIA-QHLETPVDLIL 117 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCc---cceEEEEcCHHHHh-hhcCCCCCEEE
Confidence 5679999999999999999886 579999999999999999999887752 34555554443211 12356899999
Q ss_pred EcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeec--------------------------------CCchHHHHHHHH
Q 021691 214 ASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK--------------------------------RGDSLDKFLEEI 261 (309)
Q Consensus 214 ~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~--------------------------------r~~~~~~f~~~~ 261 (309)
+..++++..+...+++.+.++|+||| .+++.... ...+.+++.+.+
T Consensus 118 ~~~vl~~~~~~~~~l~~~~~~LkpgG--~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l 195 (255)
T PRK11036 118 FHAVLEWVADPKSVLQTLWSVLRPGG--ALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWL 195 (255)
T ss_pred ehhHHHhhCCHHHHHHHHHHHcCCCe--EEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHH
Confidence 99999998889999999999999999 44332111 112346777888
Q ss_pred HhCCCeEEE
Q 021691 262 EGNHLHFSI 270 (309)
Q Consensus 262 ~~~G~~~~~ 270 (309)
+++||++..
T Consensus 196 ~~aGf~~~~ 204 (255)
T PRK11036 196 EEAGWQIMG 204 (255)
T ss_pred HHCCCeEee
Confidence 999998864
No 27
>PRK14967 putative methyltransferase; Provisional
Probab=99.54 E-value=7.6e-13 Score=116.14 Aligned_cols=142 Identities=19% Similarity=0.199 Sum_probs=102.0
Q ss_pred HHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC
Q 021691 119 EDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN 198 (309)
Q Consensus 119 a~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~ 198 (309)
+..|++.+... ...++.+|||+|||+|.+++.+++. +..+|+++|+++.+++.+++|+..++. ++.+...|+.
T Consensus 22 s~~l~~~l~~~-~~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~-----~~~~~~~d~~ 94 (223)
T PRK14967 22 TQLLADALAAE-GLGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGV-----DVDVRRGDWA 94 (223)
T ss_pred HHHHHHHHHhc-ccCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCC-----eeEEEECchh
Confidence 45677766543 3456789999999999999998875 556999999999999999999988875 2455555554
Q ss_pred CCCCCCCCCCccEEEEcCCCCCcc---------------------cHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHH
Q 021691 199 QDDFPYIVDTFDVIVASDCTFFKE---------------------FHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKF 257 (309)
Q Consensus 199 ~~~~~~~~~~fDvIi~~d~ly~~~---------------------~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f 257 (309)
.. ....+||+|+++.+.+... ....+++.+.++|+++| .+++..... .....+
T Consensus 95 ~~---~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG--~l~~~~~~~-~~~~~~ 168 (223)
T PRK14967 95 RA---VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGG--SLLLVQSEL-SGVERT 168 (223)
T ss_pred hh---ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCc--EEEEEEecc-cCHHHH
Confidence 32 2346899999975543221 14567888999999999 455443332 245678
Q ss_pred HHHHHhCCCeEEEEec
Q 021691 258 LEEIEGNHLHFSIIEN 273 (309)
Q Consensus 258 ~~~~~~~G~~~~~~~~ 273 (309)
++.+++.|+.++....
T Consensus 169 ~~~l~~~g~~~~~~~~ 184 (223)
T PRK14967 169 LTRLSEAGLDAEVVAS 184 (223)
T ss_pred HHHHHHCCCCeEEEEe
Confidence 8889999998766543
No 28
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.54 E-value=2.6e-13 Score=116.91 Aligned_cols=99 Identities=20% Similarity=0.306 Sum_probs=80.5
Q ss_pred cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691 132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV 211 (309)
Q Consensus 132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv 211 (309)
..++++|||+|||+|..++.+|+. +.+|+++|.++.+++.+++++..++.. ++.+...++.... ..++||+
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~----~v~~~~~d~~~~~---~~~~fD~ 98 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLD----NLHTAVVDLNNLT---FDGEYDF 98 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCC----cceEEecChhhCC---cCCCcCE
Confidence 446789999999999999999886 569999999999999999998887762 3555555543322 2357999
Q ss_pred EEEcCCCCCc--ccHHHHHHHHHHHHhcCC
Q 021691 212 IVASDCTFFK--EFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 212 Ii~~d~ly~~--~~~~~ll~~l~~lLk~~G 239 (309)
|+++.++|+. .....+++.+.++|+|||
T Consensus 99 I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG 128 (197)
T PRK11207 99 ILSTVVLMFLEAKTIPGLIANMQRCTKPGG 128 (197)
T ss_pred EEEecchhhCCHHHHHHHHHHHHHHcCCCc
Confidence 9999988764 467899999999999999
No 29
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.54 E-value=1.5e-13 Score=128.61 Aligned_cols=119 Identities=19% Similarity=0.185 Sum_probs=85.9
Q ss_pred HHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC
Q 021691 123 AFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF 202 (309)
Q Consensus 123 a~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~ 202 (309)
+++++.+.....+.+|||||||+|.+++.+++..+..+|+++|.|+.+++.+++|++.|+... ..++.+..-|.. .
T Consensus 217 trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~-~~~v~~~~~D~l---~ 292 (378)
T PRK15001 217 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEA-LDRCEFMINNAL---S 292 (378)
T ss_pred HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCccc-CceEEEEEcccc---c
Confidence 344444433333569999999999999999998888899999999999999999999987521 123444333221 1
Q ss_pred CCCCCCccEEEEcCCCCCc-----ccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 203 PYIVDTFDVIVASDCTFFK-----EFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 203 ~~~~~~fDvIi~~d~ly~~-----~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
.....+||+|+++.++|.. .....+++.++++|++|| .+++..
T Consensus 293 ~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG--~L~iV~ 340 (378)
T PRK15001 293 GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKING--ELYIVA 340 (378)
T ss_pred cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCC--EEEEEE
Confidence 1223589999997776543 235678999999999999 555544
No 30
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.54 E-value=3.7e-13 Score=130.89 Aligned_cols=152 Identities=16% Similarity=0.154 Sum_probs=112.6
Q ss_pred ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691 115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT 194 (309)
Q Consensus 115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ 194 (309)
.++.+..-.+.+.....+.++.+|||+|||+|..++.+++.. +.+|+++|+++.+++.+++|..... .++.+..
T Consensus 247 ~v~~~v~~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~-----~~v~~~~ 320 (475)
T PLN02336 247 VSTGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRK-----CSVEFEV 320 (475)
T ss_pred CCCchHHHHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCC-----CceEEEE
Confidence 344554444445444445578899999999999999888876 4589999999999999998865222 3566666
Q ss_pred eeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC-------------------CchHH
Q 021691 195 LHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR-------------------GDSLD 255 (309)
Q Consensus 195 l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r-------------------~~~~~ 255 (309)
.|+.... .+.++||+|++.+++++..+...+++.++++|+||| .+++....+ ..+.+
T Consensus 321 ~d~~~~~--~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG--~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 396 (475)
T PLN02336 321 ADCTKKT--YPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGG--KVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQ 396 (475)
T ss_pred cCcccCC--CCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCe--EEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHH
Confidence 6665432 334689999999999999999999999999999999 555543211 12345
Q ss_pred HHHHHHHhCCCeEEEEeccCc
Q 021691 256 KFLEEIEGNHLHFSIIENYNA 276 (309)
Q Consensus 256 ~f~~~~~~~G~~~~~~~~~~~ 276 (309)
.+.+.++++||.+..++.+..
T Consensus 397 ~~~~~l~~aGF~~i~~~d~~~ 417 (475)
T PLN02336 397 AYGQMLKDAGFDDVIAEDRTD 417 (475)
T ss_pred HHHHHHHHCCCeeeeeecchH
Confidence 677889999999877665443
No 31
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.53 E-value=2.2e-13 Score=122.73 Aligned_cols=148 Identities=18% Similarity=0.177 Sum_probs=107.4
Q ss_pred ccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEee
Q 021691 117 PSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLH 196 (309)
Q Consensus 117 ~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~ 196 (309)
.|.....+++.....+.+|.+|||||||.|.+++.+|+..+ .+|++++.|++..+.+++.+...++. ..+.+...|
T Consensus 45 ~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g-~~v~gitlS~~Q~~~a~~~~~~~gl~---~~v~v~~~D 120 (273)
T PF02353_consen 45 EAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYG-CHVTGITLSEEQAEYARERIREAGLE---DRVEVRLQD 120 (273)
T ss_dssp HHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSS---STEEEEES-
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcC-cEEEEEECCHHHHHHHHHHHHhcCCC---CceEEEEee
Confidence 45556777888888899999999999999999999999885 59999999999999999999998884 567777776
Q ss_pred CCCCCCCCCCCCccEEEEcCCCCCc--ccHHHHHHHHHHHHhcCCCeEEEEEeec---------C---------------
Q 021691 197 WNQDDFPYIVDTFDVIVASDCTFFK--EFHKDLARIIKFLLKKVGPSEALFFSPK---------R--------------- 250 (309)
Q Consensus 197 w~~~~~~~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~lLk~~G~~~~ii~~~~---------r--------------- 250 (309)
|.+. ..+||.|++..++.+. +..+.+++.+.++|+||| .+++.... +
T Consensus 121 ~~~~-----~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG--~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg 193 (273)
T PF02353_consen 121 YRDL-----PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGG--RLVLQTITHRDPPYHAERRSSSDFIRKYIFPGG 193 (273)
T ss_dssp GGG--------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTE--EEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS
T ss_pred cccc-----CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCc--EEEEEecccccccchhhcCCCceEEEEeeCCCC
Confidence 6532 3489999999999886 678999999999999999 44432210 0
Q ss_pred -CchHHHHHHHHHhCCCeEEEEeccC
Q 021691 251 -GDSLDKFLEEIEGNHLHFSIIENYN 275 (309)
Q Consensus 251 -~~~~~~f~~~~~~~G~~~~~~~~~~ 275 (309)
-.+...+...+.+.||.+..+++..
T Consensus 194 ~lps~~~~~~~~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 194 YLPSLSEILRAAEDAGLEVEDVENLG 219 (273)
T ss_dssp ---BHHHHHHHHHHTT-EEEEEEE-H
T ss_pred CCCCHHHHHHHHhcCCEEEEEEEEcC
Confidence 1134456667888999998877644
No 32
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.53 E-value=4.1e-13 Score=124.06 Aligned_cols=132 Identities=18% Similarity=0.222 Sum_probs=100.9
Q ss_pred CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691 134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV 213 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi 213 (309)
++.+|||||||+|..++.+++..++.+|+++|.+++|++.++++...++ +.+...+.. ..+...++||+|+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~-------i~~i~gD~e--~lp~~~~sFDvVI 183 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE-------CKIIEGDAE--DLPFPTDYADRYV 183 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccC-------CeEEeccHH--hCCCCCCceeEEE
Confidence 5789999999999999998887777899999999999999998765332 333333332 2233457899999
Q ss_pred EcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC---------------CchHHHHHHHHHhCCCeEEEEeccCc
Q 021691 214 ASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR---------------GDSLDKFLEEIEGNHLHFSIIENYNA 276 (309)
Q Consensus 214 ~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r---------------~~~~~~f~~~~~~~G~~~~~~~~~~~ 276 (309)
++.++++..+...+++.+.++|++|| .+++..+.. ..+.+++.+.++++||....++....
T Consensus 184 s~~~L~~~~d~~~~L~e~~rvLkPGG--~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~ 259 (340)
T PLN02490 184 SAGSIEYWPDPQRGIKEAYRVLKIGG--KACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIGP 259 (340)
T ss_pred EcChhhhCCCHHHHHHHHHHhcCCCc--EEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcCh
Confidence 99999988888999999999999999 554443211 12457788999999999876665433
No 33
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.53 E-value=2.4e-14 Score=124.68 Aligned_cols=110 Identities=16% Similarity=0.249 Sum_probs=83.4
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI 212 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI 212 (309)
+.|++|||+|||+|+++..||+. ++.|+|+|.+++|++.++.....+-... ..+. ..+...........+.||.|
T Consensus 88 ~~g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~--~~~~-y~l~~~~~~~E~~~~~fDaV 162 (282)
T KOG1270|consen 88 LLGMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLE--GAIA-YRLEYEDTDVEGLTGKFDAV 162 (282)
T ss_pred cCCceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhc--cccc-eeeehhhcchhhccccccee
Confidence 44689999999999999999997 6899999999999999998855443321 1111 11222222223334679999
Q ss_pred EEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeec
Q 021691 213 VASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK 249 (309)
Q Consensus 213 i~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~ 249 (309)
+|++++.|..+++.+++.+.++|+|+| .+++.+-.
T Consensus 163 vcsevleHV~dp~~~l~~l~~~lkP~G--~lfittin 197 (282)
T KOG1270|consen 163 VCSEVLEHVKDPQEFLNCLSALLKPNG--RLFITTIN 197 (282)
T ss_pred eeHHHHHHHhCHHHHHHHHHHHhCCCC--ceEeeehh
Confidence 999999999999999999999999999 55555533
No 34
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.52 E-value=1.1e-13 Score=119.77 Aligned_cols=129 Identities=12% Similarity=0.067 Sum_probs=97.2
Q ss_pred CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeC-CCCCCCCCCCCccEE
Q 021691 134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHW-NQDDFPYIVDTFDVI 212 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w-~~~~~~~~~~~fDvI 212 (309)
.+.+|||+|||+|..+..+++..+..+|+++|.++++++.+++++..++. .++.+...++ .........++||+|
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~----~~v~~~~~d~~~~l~~~~~~~~~D~V 115 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL----TNLRLLCGDAVEVLLDMFPDGSLDRI 115 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC----CCEEEEecCHHHHHHHHcCccccceE
Confidence 46799999999999999998887778999999999999999999988875 3466666655 221111335689999
Q ss_pred EEcCCCCCcc--------cHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEE
Q 021691 213 VASDCTFFKE--------FHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFS 269 (309)
Q Consensus 213 i~~d~ly~~~--------~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~ 269 (309)
+++.+..+.. ..+.+++.+.++|+|+| .+++ ............+.+++.|+.++
T Consensus 116 ~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG--~l~i-~~~~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 116 YLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGG--EIHF-ATDWEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHcCCCC--EEEE-EcCCHHHHHHHHHHHHhCccccc
Confidence 9865432211 25789999999999999 4444 44444556778889999998765
No 35
>PRK14968 putative methyltransferase; Provisional
Probab=99.52 E-value=1e-12 Score=111.65 Aligned_cols=144 Identities=23% Similarity=0.245 Sum_probs=103.8
Q ss_pred ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691 115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT 194 (309)
Q Consensus 115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ 194 (309)
-++-+..|..++.. .++++|||+|||+|..+..+++. +.+|+++|.++++++.+++|+..++... ..+.+..
T Consensus 8 p~~~~~~l~~~~~~----~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~--~~~~~~~ 79 (188)
T PRK14968 8 PAEDSFLLAENAVD----KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRN--NGVEVIR 79 (188)
T ss_pred cchhHHHHHHhhhc----cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCC--cceEEEe
Confidence 45666677776653 46889999999999999998887 5799999999999999999999887631 1155555
Q ss_pred eeCCCCCCCCCCCCccEEEEcCCCCC---------------------cccHHHHHHHHHHHHhcCCCeEEEEEeecCCch
Q 021691 195 LHWNQDDFPYIVDTFDVIVASDCTFF---------------------KEFHKDLARIIKFLLKKVGPSEALFFSPKRGDS 253 (309)
Q Consensus 195 l~w~~~~~~~~~~~fDvIi~~d~ly~---------------------~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~ 253 (309)
.|+.+. ....+||+|+++.+++. ......+++.+.++|+++| .+++..+. ...
T Consensus 80 ~d~~~~---~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG--~~~~~~~~-~~~ 153 (188)
T PRK14968 80 SDLFEP---FRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGG--RILLLQSS-LTG 153 (188)
T ss_pred cccccc---ccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCe--EEEEEEcc-cCC
Confidence 554332 22347999999766543 1224668899999999999 44443332 223
Q ss_pred HHHHHHHHHhCCCeEEEEe
Q 021691 254 LDKFLEEIEGNHLHFSIIE 272 (309)
Q Consensus 254 ~~~f~~~~~~~G~~~~~~~ 272 (309)
.+.+.+.+.+.||.+..+.
T Consensus 154 ~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 154 EDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred HHHHHHHHHHCCCeeeeee
Confidence 4667888999999876543
No 36
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.52 E-value=5.6e-13 Score=120.41 Aligned_cols=134 Identities=16% Similarity=0.151 Sum_probs=102.2
Q ss_pred CcCCCCeEEEeCCCCChhhHHHHHhcCC-cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCc
Q 021691 131 DMFRSKRVIELGSGYGLAGLVIAATTEA-LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTF 209 (309)
Q Consensus 131 ~~~~g~~VLELG~GtG~~~l~la~~~~~-~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~f 209 (309)
.+.+|.+|||+|||+|..++.+++..+. .+|+++|.++.+++.++++...++. .++.+...++.. .+..+++|
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~----~~v~~~~~d~~~--l~~~~~~f 147 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY----TNVEFRLGEIEA--LPVADNSV 147 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC----CCEEEEEcchhh--CCCCCCce
Confidence 3557899999999999988877776544 4899999999999999999887765 245555555432 23345689
Q ss_pred cEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeec---------------------CCchHHHHHHHHHhCCCeE
Q 021691 210 DVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK---------------------RGDSLDKFLEEIEGNHLHF 268 (309)
Q Consensus 210 DvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~---------------------r~~~~~~f~~~~~~~G~~~ 268 (309)
|+|+++.++++..+.+.+++.+.++|+||| .+++.... ...+..++.+.++++||..
T Consensus 148 D~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG--~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~ 225 (272)
T PRK11873 148 DVIISNCVINLSPDKERVFKEAFRVLKPGG--RFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVD 225 (272)
T ss_pred eEEEEcCcccCCCCHHHHHHHHHHHcCCCc--EEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCc
Confidence 999998888888888999999999999999 55554311 1124567888899999987
Q ss_pred EEEe
Q 021691 269 SIIE 272 (309)
Q Consensus 269 ~~~~ 272 (309)
..+.
T Consensus 226 v~i~ 229 (272)
T PRK11873 226 ITIQ 229 (272)
T ss_pred eEEE
Confidence 5543
No 37
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.51 E-value=8.7e-13 Score=120.92 Aligned_cols=148 Identities=14% Similarity=0.110 Sum_probs=101.7
Q ss_pred ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691 115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT 194 (309)
Q Consensus 115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ 194 (309)
-|-|......++. +....+|++|||+|||+|..+..++.. ++..|+++|.++.|+..++..-...+. ...+.+..
T Consensus 103 e~~s~~~~~~~l~-~l~~~~g~~VLDvGCG~G~~~~~~~~~-g~~~v~GiDpS~~ml~q~~~~~~~~~~---~~~v~~~~ 177 (314)
T TIGR00452 103 EWRSDIKWDRVLP-HLSPLKGRTILDVGCGSGYHMWRMLGH-GAKSLVGIDPTVLFLCQFEAVRKLLDN---DKRAILEP 177 (314)
T ss_pred HHHHHHHHHHHHH-hcCCCCCCEEEEeccCCcHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHHHHHhcc---CCCeEEEE
Confidence 4666665554443 345678999999999999998887765 556899999999998765432221111 12344444
Q ss_pred eeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee-----c--------C---------Cc
Q 021691 195 LHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP-----K--------R---------GD 252 (309)
Q Consensus 195 l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~-----~--------r---------~~ 252 (309)
.+..+ .+. ..+||+|++..++||..+....++.++++|++|| .+++.+. . + ..
T Consensus 178 ~~ie~--lp~-~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG--~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flp 252 (314)
T TIGR00452 178 LGIEQ--LHE-LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKG--ELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIP 252 (314)
T ss_pred CCHHH--CCC-CCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCC--EEEEEEEEecCccccccCchHHHHhccccccCC
Confidence 43322 222 2479999999999999999999999999999999 4544321 0 0 11
Q ss_pred hHHHHHHHHHhCCCeEEEEe
Q 021691 253 SLDKFLEEIEGNHLHFSIIE 272 (309)
Q Consensus 253 ~~~~f~~~~~~~G~~~~~~~ 272 (309)
+...+.+.++++||+...+.
T Consensus 253 S~~~L~~~L~~aGF~~V~i~ 272 (314)
T TIGR00452 253 SVSALKNWLEKVGFENFRIL 272 (314)
T ss_pred CHHHHHHHHHHCCCeEEEEE
Confidence 34566788999999976544
No 38
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.51 E-value=1e-12 Score=117.37 Aligned_cols=143 Identities=17% Similarity=0.129 Sum_probs=98.6
Q ss_pred HHHHHHHHhhCcC-cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeC
Q 021691 119 EDVLAFFSLSHAD-MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHW 197 (309)
Q Consensus 119 a~~La~~l~~~~~-~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w 197 (309)
+..|.+.+..... ...+.+|||+|||+|.+++.+++..++.+|+++|+|+.+++.+++|+..|+. ++...|+
T Consensus 70 Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~-------~~~~~D~ 142 (251)
T TIGR03704 70 TEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGG-------TVHEGDL 142 (251)
T ss_pred HHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-------EEEEeec
Confidence 4556555544322 1234589999999999999999887778999999999999999999988763 3344444
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCcc--------------------------cHHHHHHHHHHHHhcCCCeEEEEEeecCC
Q 021691 198 NQDDFPYIVDTFDVIVASDCTFFKE--------------------------FHKDLARIIKFLLKKVGPSEALFFSPKRG 251 (309)
Q Consensus 198 ~~~~~~~~~~~fDvIi~~d~ly~~~--------------------------~~~~ll~~l~~lLk~~G~~~~ii~~~~r~ 251 (309)
.........++||+|+++.+..... .+..+++.+.++|+++| .+++.. . .
T Consensus 143 ~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG--~l~l~~-~-~ 218 (251)
T TIGR03704 143 YDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGG--HLLVET-S-E 218 (251)
T ss_pred hhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCC--EEEEEE-C-c
Confidence 3221111235799999965433111 13477888889999999 444433 2 2
Q ss_pred chHHHHHHHHHhCCCeEEEEe
Q 021691 252 DSLDKFLEEIEGNHLHFSIIE 272 (309)
Q Consensus 252 ~~~~~f~~~~~~~G~~~~~~~ 272 (309)
.......+.+++.||......
T Consensus 219 ~~~~~v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 219 RQAPLAVEAFARAGLIARVAS 239 (251)
T ss_pred chHHHHHHHHHHCCCCceeeE
Confidence 345678888999999876654
No 39
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=3.6e-13 Score=120.57 Aligned_cols=116 Identities=22% Similarity=0.333 Sum_probs=87.4
Q ss_pred HHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC
Q 021691 123 AFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF 202 (309)
Q Consensus 123 a~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~ 202 (309)
++.++++.....+.+|||||||.|.+|+.+|+..|..+++.+|.|..+++.+|+|+..|+... ..+ |.....
T Consensus 147 S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~----~~v----~~s~~~ 218 (300)
T COG2813 147 SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVEN----TEV----WASNLY 218 (300)
T ss_pred HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCc----cEE----EEeccc
Confidence 344444444444559999999999999999999998999999999999999999999998842 111 111222
Q ss_pred CCCCCCccEEEEcCCCCCccc-----HHHHHHHHHHHHhcCCCeEEEEEee
Q 021691 203 PYIVDTFDVIVASDCTFFKEF-----HKDLARIIKFLLKKVGPSEALFFSP 248 (309)
Q Consensus 203 ~~~~~~fDvIi~~d~ly~~~~-----~~~ll~~l~~lLk~~G~~~~ii~~~ 248 (309)
....++||+||++.++|.... -..++....+.|++|| .+.+...
T Consensus 219 ~~v~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gG--eL~iVan 267 (300)
T COG2813 219 EPVEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGG--ELWIVAN 267 (300)
T ss_pred ccccccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCC--EEEEEEc
Confidence 223348999999999887433 3478999999999999 5555554
No 40
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.50 E-value=3.4e-13 Score=115.95 Aligned_cols=98 Identities=14% Similarity=0.223 Sum_probs=78.1
Q ss_pred cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691 132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV 211 (309)
Q Consensus 132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv 211 (309)
..++.+|||+|||+|..++.+|+. +.+|+++|.++.|++.+++++..+++. +.....+..... ..++||+
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~-----v~~~~~d~~~~~---~~~~fD~ 97 (195)
T TIGR00477 28 TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLP-----LRTDAYDINAAA---LNEDYDF 97 (195)
T ss_pred cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCC-----ceeEeccchhcc---ccCCCCE
Confidence 345679999999999999999885 569999999999999999998877762 344444432211 2357999
Q ss_pred EEEcCCCCCc--ccHHHHHHHHHHHHhcCC
Q 021691 212 IVASDCTFFK--EFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 212 Ii~~d~ly~~--~~~~~ll~~l~~lLk~~G 239 (309)
|+++.++++. ...+.+++.+.++|+|||
T Consensus 98 I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 127 (195)
T TIGR00477 98 IFSTVVFMFLQAGRVPEIIANMQAHTRPGG 127 (195)
T ss_pred EEEecccccCCHHHHHHHHHHHHHHhCCCc
Confidence 9999888764 567899999999999999
No 41
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.50 E-value=8.7e-13 Score=117.78 Aligned_cols=136 Identities=23% Similarity=0.201 Sum_probs=99.3
Q ss_pred ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691 115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT 194 (309)
Q Consensus 115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ 194 (309)
..+....+.+.+... ..++++|||+|||+|.+++.+++ .++.+|+++|+++.+++.+++|+..|++. ..+.+..
T Consensus 102 ~h~tt~~~l~~l~~~--~~~~~~VLDiGcGsG~l~i~~~~-~g~~~v~giDis~~~l~~A~~n~~~~~~~---~~~~~~~ 175 (250)
T PRK00517 102 THPTTRLCLEALEKL--VLPGKTVLDVGCGSGILAIAAAK-LGAKKVLAVDIDPQAVEAARENAELNGVE---LNVYLPQ 175 (250)
T ss_pred CCHHHHHHHHHHHhh--cCCCCEEEEeCCcHHHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCC---ceEEEcc
Confidence 346666666666543 34789999999999999998666 46667999999999999999999998872 2222211
Q ss_pred eeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEe
Q 021691 195 LHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIE 272 (309)
Q Consensus 195 l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~ 272 (309)
...+||+|+++-. ...+..++..+.++|++|| .+++.... ....+.+.+.+++.||.+....
T Consensus 176 ----------~~~~fD~Vvani~---~~~~~~l~~~~~~~LkpgG--~lilsgi~-~~~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 176 ----------GDLKADVIVANIL---ANPLLELAPDLARLLKPGG--RLILSGIL-EEQADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred ----------CCCCcCEEEEcCc---HHHHHHHHHHHHHhcCCCc--EEEEEECc-HhhHHHHHHHHHHCCCEEEEEE
Confidence 1127999998532 3446778899999999999 55554433 3455778889999999876543
No 42
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.50 E-value=9.7e-14 Score=104.15 Aligned_cols=91 Identities=19% Similarity=0.238 Sum_probs=74.2
Q ss_pred EEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEcCCC
Q 021691 139 IELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCT 218 (309)
Q Consensus 139 LELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~l 218 (309)
||+|||+|..+..+++. ++.+|+++|.++++++.++++....+. .+...+.. ..+..+++||+|++..++
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~-------~~~~~d~~--~l~~~~~sfD~v~~~~~~ 70 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGV-------SFRQGDAE--DLPFPDNSFDVVFSNSVL 70 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTE-------EEEESBTT--SSSS-TT-EEEEEEESHG
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCc-------hheeehHH--hCccccccccccccccce
Confidence 89999999999999887 788999999999999999987665433 34444433 335567899999999999
Q ss_pred CCcccHHHHHHHHHHHHhcCC
Q 021691 219 FFKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 219 y~~~~~~~ll~~l~~lLk~~G 239 (309)
++.++...+++++.++|||+|
T Consensus 71 ~~~~~~~~~l~e~~rvLk~gG 91 (95)
T PF08241_consen 71 HHLEDPEAALREIYRVLKPGG 91 (95)
T ss_dssp GGSSHHHHHHHHHHHHEEEEE
T ss_pred eeccCHHHHHHHHHHHcCcCe
Confidence 999999999999999999999
No 43
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.50 E-value=1.4e-12 Score=112.38 Aligned_cols=135 Identities=15% Similarity=0.174 Sum_probs=101.2
Q ss_pred CcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCC
Q 021691 129 HADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVD 207 (309)
Q Consensus 129 ~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~ 207 (309)
...+.++.+|||+|||+|.+++.+|+..+ +.+|+++|.++.+++.+++|+..+++. .++.+...+..+. .+...+
T Consensus 35 ~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~---~~v~~~~~d~~~~-l~~~~~ 110 (198)
T PRK00377 35 KLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL---NNIVLIKGEAPEI-LFTINE 110 (198)
T ss_pred HcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC---CCeEEEEechhhh-HhhcCC
Confidence 34667889999999999999999887653 469999999999999999999988752 3455544443221 122336
Q ss_pred CccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEec
Q 021691 208 TFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIEN 273 (309)
Q Consensus 208 ~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~ 273 (309)
.||.|++.. .......+++.+.++|+|+| .+++ .....++..+..+.+++.||.++.++.
T Consensus 111 ~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG--~lv~-~~~~~~~~~~~~~~l~~~g~~~~~~~~ 170 (198)
T PRK00377 111 KFDRIFIGG---GSEKLKEIISASWEIIKKGG--RIVI-DAILLETVNNALSALENIGFNLEITEV 170 (198)
T ss_pred CCCEEEECC---CcccHHHHHHHHHHHcCCCc--EEEE-EeecHHHHHHHHHHHHHcCCCeEEEEE
Confidence 899999853 23456889999999999999 4443 444556778888899999997766654
No 44
>PRK08317 hypothetical protein; Provisional
Probab=99.49 E-value=1.9e-12 Score=113.81 Aligned_cols=121 Identities=15% Similarity=0.126 Sum_probs=91.2
Q ss_pred ccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhc-CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEe
Q 021691 117 PSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATT-EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTL 195 (309)
Q Consensus 117 ~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~-~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l 195 (309)
|-...+-+.+.......++.+|||+|||+|..+..++... +..+|+++|.++.+++.++++..... .++.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~-----~~~~~~~~ 76 (241)
T PRK08317 2 PDFRRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG-----PNVEFVRG 76 (241)
T ss_pred chHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC-----CceEEEec
Confidence 3334444455555566788999999999999999988876 45799999999999999998733221 24455544
Q ss_pred eCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691 196 HWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFF 246 (309)
Q Consensus 196 ~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~ 246 (309)
+.... +...++||+|++..++.+..+...+++.+.++|+++| .+++.
T Consensus 77 d~~~~--~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG--~l~~~ 123 (241)
T PRK08317 77 DADGL--PFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGG--RVVVL 123 (241)
T ss_pred ccccC--CCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCc--EEEEE
Confidence 43322 2345789999999999998899999999999999999 44443
No 45
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.49 E-value=8.2e-13 Score=118.23 Aligned_cols=95 Identities=20% Similarity=0.150 Sum_probs=77.1
Q ss_pred CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691 131 DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD 210 (309)
Q Consensus 131 ~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD 210 (309)
...++.+|||+|||+|.++..+++..+..+|+++|.++.|++.++++ +. .+...|... . ...++||
T Consensus 26 ~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----~~-------~~~~~d~~~--~-~~~~~fD 91 (255)
T PRK14103 26 GAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----GV-------DARTGDVRD--W-KPKPDTD 91 (255)
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----CC-------cEEEcChhh--C-CCCCCce
Confidence 44577899999999999999999887778999999999999998753 22 233333221 1 1246899
Q ss_pred EEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691 211 VIVASDCTFFKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 211 vIi~~d~ly~~~~~~~ll~~l~~lLk~~G 239 (309)
+|+++.++++..+...+++.+.++|+|||
T Consensus 92 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG 120 (255)
T PRK14103 92 VVVSNAALQWVPEHADLLVRWVDELAPGS 120 (255)
T ss_pred EEEEehhhhhCCCHHHHHHHHHHhCCCCc
Confidence 99999999999899999999999999999
No 46
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.48 E-value=1e-14 Score=111.30 Aligned_cols=95 Identities=20% Similarity=0.231 Sum_probs=64.0
Q ss_pred EEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC--CCCCCCccEEEEcC
Q 021691 139 IELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF--PYIVDTFDVIVASD 216 (309)
Q Consensus 139 LELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~--~~~~~~fDvIi~~d 216 (309)
||+|||+|..+..+++.++..+|+++|+|+.|++.+++++...... ... .+.+...+. ....++||+|+++.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~fD~V~~~~ 74 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND----NFE--RLRFDVLDLFDYDPPESFDLVVASN 74 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT-------EE--EEE--SSS---CCC----SEEEEE-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc----cee--EEEeecCChhhcccccccceehhhh
Confidence 7999999999999988888899999999999999888888776542 122 223322222 12235999999999
Q ss_pred CCCCcccHHHHHHHHHHHHhcCC
Q 021691 217 CTFFKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 217 ~ly~~~~~~~ll~~l~~lLk~~G 239 (309)
++++.+++..+++.++++|+|||
T Consensus 75 vl~~l~~~~~~l~~~~~~L~pgG 97 (99)
T PF08242_consen 75 VLHHLEDIEAVLRNIYRLLKPGG 97 (99)
T ss_dssp TTS--S-HHHHHHHHTTT-TSS-
T ss_pred hHhhhhhHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999
No 47
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.48 E-value=1.6e-12 Score=118.36 Aligned_cols=139 Identities=20% Similarity=0.179 Sum_probs=98.4
Q ss_pred ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691 115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT 194 (309)
Q Consensus 115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ 194 (309)
+.|......+++... ..+|++|||+|||+|.+++.+++ .++.+|+++|+++.+++.+++|+..|++. ..+....
T Consensus 142 ~h~tt~l~l~~l~~~--~~~g~~VLDvGcGsG~lai~aa~-~g~~~V~avDid~~al~~a~~n~~~n~~~---~~~~~~~ 215 (288)
T TIGR00406 142 THPTTSLCLEWLEDL--DLKDKNVIDVGCGSGILSIAALK-LGAAKVVGIDIDPLAVESARKNAELNQVS---DRLQVKL 215 (288)
T ss_pred CCHHHHHHHHHHHhh--cCCCCEEEEeCCChhHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCC---cceEEEe
Confidence 346665555555433 24689999999999999998766 56779999999999999999999999873 2333332
Q ss_pred eeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEE
Q 021691 195 LHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSI 270 (309)
Q Consensus 195 l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~ 270 (309)
.+ ......++||+|+++-. ...+..++..+.++|+||| .+++... .......+.+.+++. |.+..
T Consensus 216 ~~----~~~~~~~~fDlVvan~~---~~~l~~ll~~~~~~LkpgG--~li~sgi-~~~~~~~v~~~~~~~-f~~~~ 280 (288)
T TIGR00406 216 IY----LEQPIEGKADVIVANIL---AEVIKELYPQFSRLVKPGG--WLILSGI-LETQAQSVCDAYEQG-FTVVE 280 (288)
T ss_pred cc----cccccCCCceEEEEecC---HHHHHHHHHHHHHHcCCCc--EEEEEeC-cHhHHHHHHHHHHcc-Cceee
Confidence 21 11223468999999633 3455688999999999999 5555444 334556777778766 76643
No 48
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.47 E-value=2.5e-12 Score=116.86 Aligned_cols=127 Identities=15% Similarity=0.143 Sum_probs=94.0
Q ss_pred CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691 134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV 213 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi 213 (309)
++++|||+|||+|..++.+++..+..+|+++|+|+.+++.+++|+..+++. .++.+...|+... ....+||+|+
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~---~~i~~~~~D~~~~---~~~~~fD~Iv 194 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLE---DRVTLIQSDLFAA---LPGRKYDLIV 194 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEECchhhc---cCCCCccEEE
Confidence 457999999999999999999877789999999999999999999999873 3566766665322 1235799999
Q ss_pred EcCCCCCc-------------------------ccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeE
Q 021691 214 ASDCTFFK-------------------------EFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHF 268 (309)
Q Consensus 214 ~~d~ly~~-------------------------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~ 268 (309)
++.+.... .....+++.+.++|++|| .+ ++.... ....+.+.+.+.||.+
T Consensus 195 ~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG--~l-~~e~g~--~~~~v~~~~~~~~~~~ 269 (284)
T TIGR03533 195 SNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENG--VL-VVEVGN--SMEALEEAYPDVPFTW 269 (284)
T ss_pred ECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCC--EE-EEEECc--CHHHHHHHHHhCCCce
Confidence 96543211 123567888899999999 33 344333 2257778888888876
Q ss_pred EEE
Q 021691 269 SII 271 (309)
Q Consensus 269 ~~~ 271 (309)
...
T Consensus 270 ~~~ 272 (284)
T TIGR03533 270 LEF 272 (284)
T ss_pred eee
Confidence 433
No 49
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.47 E-value=2.4e-12 Score=115.35 Aligned_cols=109 Identities=17% Similarity=0.132 Sum_probs=83.5
Q ss_pred HHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC
Q 021691 123 AFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF 202 (309)
Q Consensus 123 a~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~ 202 (309)
+..+.......++.+|||+|||+|.++..+++..++.+|+++|.++.|++.++++.. ++.+...|....
T Consensus 20 ~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~---------~~~~~~~d~~~~-- 88 (258)
T PRK01683 20 ARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP---------DCQFVEADIASW-- 88 (258)
T ss_pred HHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC---------CCeEEECchhcc--
Confidence 334444444567889999999999999999988877899999999999999987642 122222222111
Q ss_pred CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEE
Q 021691 203 PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALF 245 (309)
Q Consensus 203 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii 245 (309)
....+||+|+++.++++..+...+++.+.++|+||| .+++
T Consensus 89 -~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG--~~~~ 128 (258)
T PRK01683 89 -QPPQALDLIFANASLQWLPDHLELFPRLVSLLAPGG--VLAV 128 (258)
T ss_pred -CCCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCc--EEEE
Confidence 123589999999999998899999999999999999 4444
No 50
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.46 E-value=6.8e-13 Score=109.55 Aligned_cols=99 Identities=26% Similarity=0.342 Sum_probs=76.0
Q ss_pred cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691 132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV 211 (309)
Q Consensus 132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv 211 (309)
..++++|||+|||+|..+..+++. +.+|+++|.++.+++. .+ +.....+- .......++||+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~------~~--------~~~~~~~~--~~~~~~~~~fD~ 81 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK------RN--------VVFDNFDA--QDPPFPDGSFDL 81 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH------TT--------SEEEEEEC--HTHHCHSSSEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh------hh--------hhhhhhhh--hhhhccccchhh
Confidence 457889999999999999988665 4499999999999888 11 11111110 112234578999
Q ss_pred EEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC
Q 021691 212 IVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR 250 (309)
Q Consensus 212 Ii~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r 250 (309)
|++++++++..+...+++.+.++|+||| .+++..+.+
T Consensus 82 i~~~~~l~~~~d~~~~l~~l~~~LkpgG--~l~~~~~~~ 118 (161)
T PF13489_consen 82 IICNDVLEHLPDPEEFLKELSRLLKPGG--YLVISDPNR 118 (161)
T ss_dssp EEEESSGGGSSHHHHHHHHHHHCEEEEE--EEEEEEEBT
T ss_pred HhhHHHHhhcccHHHHHHHHHHhcCCCC--EEEEEEcCC
Confidence 9999999999999999999999999999 666666543
No 51
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.46 E-value=4.4e-12 Score=111.69 Aligned_cols=109 Identities=16% Similarity=0.099 Sum_probs=86.8
Q ss_pred cCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691 132 MFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD 210 (309)
Q Consensus 132 ~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD 210 (309)
..++.+|||+|||+|..+..++...+ ..+|+++|.++.+++.+++++..++.. .++.+...+.... +...++||
T Consensus 49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~---~~~~~~~~d~~~~--~~~~~~~D 123 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLS---GNVEFVQGDAEAL--PFPDNSFD 123 (239)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccc---cCeEEEecccccC--CCCCCCcc
Confidence 34678999999999999999888765 479999999999999999998765442 3455555554432 23346899
Q ss_pred EEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 211 VIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 211 vIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
+|+++.++++..+...+++.+.++|+++| .+++..
T Consensus 124 ~I~~~~~l~~~~~~~~~l~~~~~~L~~gG--~li~~~ 158 (239)
T PRK00216 124 AVTIAFGLRNVPDIDKALREMYRVLKPGG--RLVILE 158 (239)
T ss_pred EEEEecccccCCCHHHHHHHHHHhccCCc--EEEEEE
Confidence 99999999998899999999999999999 555543
No 52
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.46 E-value=1.2e-12 Score=116.85 Aligned_cols=111 Identities=15% Similarity=0.111 Sum_probs=81.9
Q ss_pred HHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC
Q 021691 122 LAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD 201 (309)
Q Consensus 122 La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~ 201 (309)
.++.+.+.....++.+|||+|||+|.++..+++. +.+|+++|.++.|++.++++... ..+...|...
T Consensus 30 ~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~---------~~~~~~d~~~-- 96 (251)
T PRK10258 30 SADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAA---------DHYLAGDIES-- 96 (251)
T ss_pred HHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCC---------CCEEEcCccc--
Confidence 3444444333345689999999999998888764 57999999999999999876421 1222333322
Q ss_pred CCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 202 FPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 202 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
.+..+++||+|+++.++++..+...++..+.++|+||| .+++..
T Consensus 97 ~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG--~l~~~~ 140 (251)
T PRK10258 97 LPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGG--VVAFTT 140 (251)
T ss_pred CcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCe--EEEEEe
Confidence 23445689999999999998899999999999999999 455443
No 53
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.44 E-value=4.7e-12 Score=113.41 Aligned_cols=146 Identities=18% Similarity=0.221 Sum_probs=101.3
Q ss_pred cccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEe
Q 021691 116 WPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTL 195 (309)
Q Consensus 116 W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l 195 (309)
|.|...-.+ +..+.....|++|||+|||.|..+..++.. |++.|+|+|.++...-..+.--..-+. ...+..+
T Consensus 98 WrSd~KW~r-l~p~l~~L~gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~lf~~QF~~i~~~lg~-----~~~~~~l 170 (315)
T PF08003_consen 98 WRSDWKWDR-LLPHLPDLKGKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPLFYLQFEAIKHFLGQ-----DPPVFEL 170 (315)
T ss_pred ccccchHHH-HHhhhCCcCCCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChHHHHHHHHHHHHhCC-----CccEEEc
Confidence 666655444 344445679999999999999999997765 788999999887665443322122221 1122223
Q ss_pred eCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe------------ec-C---------Cch
Q 021691 196 HWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS------------PK-R---------GDS 253 (309)
Q Consensus 196 ~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~------------~~-r---------~~~ 253 (309)
..+-+..+. .+.||+|++..++||..++-..+..++..|++|| .+++-+ |. | -.+
T Consensus 171 plgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gG--eLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs 247 (315)
T PF08003_consen 171 PLGVEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGG--ELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPS 247 (315)
T ss_pred Ccchhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCC--EEEEEEeeecCCCceEEccCCcccCCCceEEeCC
Confidence 223344444 5789999999999999999999999999999999 454332 11 1 125
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 021691 254 LDKFLEEIEGNHLHFSII 271 (309)
Q Consensus 254 ~~~f~~~~~~~G~~~~~~ 271 (309)
...+...++++||.-..+
T Consensus 248 ~~~L~~wl~r~gF~~v~~ 265 (315)
T PF08003_consen 248 VAALKNWLERAGFKDVRC 265 (315)
T ss_pred HHHHHHHHHHcCCceEEE
Confidence 678889999999985443
No 54
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.44 E-value=7e-12 Score=117.94 Aligned_cols=142 Identities=20% Similarity=0.177 Sum_probs=102.3
Q ss_pred ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691 115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT 194 (309)
Q Consensus 115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ 194 (309)
--|..+.|.+.+.... .++.+|||+|||+|.+++.+++..+..+|+++|+|+.|++.+++|++.++. ++.+..
T Consensus 234 PRpeTE~LVe~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-----rV~fi~ 306 (423)
T PRK14966 234 PRPETEHLVEAVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-----RVEFAH 306 (423)
T ss_pred CCccHHHHHHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----cEEEEE
Confidence 3455677777776543 256799999999999999998877788999999999999999999988764 467777
Q ss_pred eeCCCCCCCCCCCCccEEEEcCCCCCc-------------------------ccHHHHHHHHHHHHhcCCCeEEEEEeec
Q 021691 195 LHWNQDDFPYIVDTFDVIVASDCTFFK-------------------------EFHKDLARIIKFLLKKVGPSEALFFSPK 249 (309)
Q Consensus 195 l~w~~~~~~~~~~~fDvIi~~d~ly~~-------------------------~~~~~ll~~l~~lLk~~G~~~~ii~~~~ 249 (309)
.||.+...+ ..++||+|+++.+.... ..+..+++.+.+.|+++| .+++...
T Consensus 307 gDl~e~~l~-~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG--~lilEiG- 382 (423)
T PRK14966 307 GSWFDTDMP-SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGG--FLLLEHG- 382 (423)
T ss_pred cchhccccc-cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCc--EEEEEEC-
Confidence 777543221 23579999996653211 124467778888999999 4333222
Q ss_pred CCchHHHHHHHHHhCCCeE
Q 021691 250 RGDSLDKFLEEIEGNHLHF 268 (309)
Q Consensus 250 r~~~~~~f~~~~~~~G~~~ 268 (309)
....+...+.+++.||..
T Consensus 383 -~~Q~e~V~~ll~~~Gf~~ 400 (423)
T PRK14966 383 -FDQGAAVRGVLAENGFSG 400 (423)
T ss_pred -ccHHHHHHHHHHHCCCcE
Confidence 233456777788888864
No 55
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.43 E-value=3.1e-12 Score=118.89 Aligned_cols=103 Identities=18% Similarity=0.220 Sum_probs=81.0
Q ss_pred CCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEE
Q 021691 135 SKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVA 214 (309)
Q Consensus 135 g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~ 214 (309)
..+|||||||+|.+++.+++..+..+|+++|+++.|++.++.|++.|++. . .+...|.. ....++||+|++
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~---~--~~~~~D~~----~~~~~~fDlIvs 267 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE---G--EVFASNVF----SDIKGRFDMIIS 267 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC---C--EEEEcccc----cccCCCccEEEE
Confidence 45899999999999999999877779999999999999999999999873 1 22222221 123468999999
Q ss_pred cCCCCC-----cccHHHHHHHHHHHHhcCCCeEEEEEee
Q 021691 215 SDCTFF-----KEFHKDLARIIKFLLKKVGPSEALFFSP 248 (309)
Q Consensus 215 ~d~ly~-----~~~~~~ll~~l~~lLk~~G~~~~ii~~~ 248 (309)
+.++|. ......+++.+.++|++|| .+++.+.
T Consensus 268 NPPFH~g~~~~~~~~~~~i~~a~~~LkpgG--~L~iVan 304 (342)
T PRK09489 268 NPPFHDGIQTSLDAAQTLIRGAVRHLNSGG--ELRIVAN 304 (342)
T ss_pred CCCccCCccccHHHHHHHHHHHHHhcCcCC--EEEEEEe
Confidence 887765 2456889999999999999 5655554
No 56
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.43 E-value=2.6e-12 Score=123.85 Aligned_cols=152 Identities=18% Similarity=0.146 Sum_probs=111.7
Q ss_pred HHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC
Q 021691 119 EDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN 198 (309)
Q Consensus 119 a~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~ 198 (309)
++.|.+.+.......++.+|||+|||+|.+++.+|+. +.+|+++|.++.|++.+++|+..|++. ++.+...|+.
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~----~v~~~~~d~~ 355 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ--AAEVVGVEGVEAMVERARENARRNGLD----NVTFYHANLE 355 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCC----ceEEEEeChH
Confidence 4667777766555667889999999999999999887 479999999999999999999999873 4777777765
Q ss_pred CCCC--CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEeccCc
Q 021691 199 QDDF--PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYNA 276 (309)
Q Consensus 199 ~~~~--~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~~~~ 276 (309)
+... +....+||+|++ |+.|.. ....++.+.+ +++++ +++.++ .+.|+.+-+..+.+.|+.++.+..+|.
T Consensus 356 ~~l~~~~~~~~~fD~Vi~-dPPr~g--~~~~~~~l~~-~~~~~---ivyvSC-np~tlaRDl~~L~~~gY~l~~i~~~Dm 427 (443)
T PRK13168 356 EDFTDQPWALGGFDKVLL-DPPRAG--AAEVMQALAK-LGPKR---IVYVSC-NPATLARDAGVLVEAGYRLKRAGMLDM 427 (443)
T ss_pred HhhhhhhhhcCCCCEEEE-CcCCcC--hHHHHHHHHh-cCCCe---EEEEEe-ChHHhhccHHHHhhCCcEEEEEEEecc
Confidence 3221 122457999998 666653 2345565555 34544 444444 667777777888889999999998887
Q ss_pred hhhhhhhc
Q 021691 277 EIWKRHQM 284 (309)
Q Consensus 277 ~~~~~~~~ 284 (309)
-++..|-+
T Consensus 428 FP~T~HvE 435 (443)
T PRK13168 428 FPHTGHVE 435 (443)
T ss_pred CCCCCcEE
Confidence 66665543
No 57
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.43 E-value=4.1e-12 Score=111.13 Aligned_cols=129 Identities=18% Similarity=0.157 Sum_probs=92.3
Q ss_pred cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691 132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV 211 (309)
Q Consensus 132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv 211 (309)
..++++|||+|||+|.++..+++. +.+|+++|++++|++.+++++..++.. .++.+...++... .++||+
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~---~~i~~~~~d~~~~-----~~~fD~ 122 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVA---GNVEFEVNDLLSL-----CGEFDI 122 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCC---CceEEEECChhhC-----CCCcCE
Confidence 457899999999999999998875 569999999999999999998876642 2455555544322 268999
Q ss_pred EEEcCCCCCc--ccHHHHHHHHHHHHhcCCCeEEEEEeecC-----------------------CchHHHHHHHHHhCCC
Q 021691 212 IVASDCTFFK--EFHKDLARIIKFLLKKVGPSEALFFSPKR-----------------------GDSLDKFLEEIEGNHL 266 (309)
Q Consensus 212 Ii~~d~ly~~--~~~~~ll~~l~~lLk~~G~~~~ii~~~~r-----------------------~~~~~~f~~~~~~~G~ 266 (309)
|++.+++++. .....+++.+.+++++++ ++.+.+.. ..+.+++.+.++++||
T Consensus 123 ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 199 (219)
T TIGR02021 123 VVCMDVLIHYPASDMAKALGHLASLTKERV---IFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGW 199 (219)
T ss_pred EEEhhHHHhCCHHHHHHHHHHHHHHhCCCE---EEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCc
Confidence 9999987653 346677888888876443 44443211 1134567777778888
Q ss_pred eEEEEec
Q 021691 267 HFSIIEN 273 (309)
Q Consensus 267 ~~~~~~~ 273 (309)
.+...+.
T Consensus 200 ~v~~~~~ 206 (219)
T TIGR02021 200 KIVREGL 206 (219)
T ss_pred eeeeeec
Confidence 7766554
No 58
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=5.8e-12 Score=114.01 Aligned_cols=118 Identities=19% Similarity=0.229 Sum_probs=88.3
Q ss_pred eEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEcC
Q 021691 137 RVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASD 216 (309)
Q Consensus 137 ~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d 216 (309)
+|||||||+|.+++.+|+.++..+|+++|+|+++++.+++|+..|++ .++.....+|-... .++||+|+++.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l----~~~~~~~~dlf~~~----~~~fDlIVsNP 184 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL----VRVLVVQSDLFEPL----RGKFDLIVSNP 184 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC----ccEEEEeeeccccc----CCceeEEEeCC
Confidence 89999999999999999998888999999999999999999999997 23444444665332 34899999966
Q ss_pred CCCCcc-------------------------cHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCC
Q 021691 217 CTFFKE-------------------------FHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHL 266 (309)
Q Consensus 217 ~ly~~~-------------------------~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~ 266 (309)
+.-..+ .+..++..+.+.|+++| ++++.... ...+...+.+.+.|+
T Consensus 185 PYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g---~l~le~g~-~q~~~v~~~~~~~~~ 255 (280)
T COG2890 185 PYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGG---VLILEIGL-TQGEAVKALFEDTGF 255 (280)
T ss_pred CCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCc---EEEEEECC-CcHHHHHHHHHhcCC
Confidence 532221 24567788889999977 44444332 234667788888884
No 59
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.43 E-value=2e-12 Score=117.80 Aligned_cols=97 Identities=19% Similarity=0.295 Sum_probs=79.2
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI 212 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI 212 (309)
.++++|||+|||+|..++.+++. +.+|+++|.++.+++.+++++..+++ ++.+...|..... ..++||+|
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l-----~v~~~~~D~~~~~---~~~~fD~I 188 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENL-----NIRTGLYDINSAS---IQEEYDFI 188 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCC-----ceEEEEechhccc---ccCCccEE
Confidence 34569999999999999998885 56999999999999999999988776 3455555443322 25789999
Q ss_pred EEcCCCCCc--ccHHHHHHHHHHHHhcCC
Q 021691 213 VASDCTFFK--EFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 213 i~~d~ly~~--~~~~~ll~~l~~lLk~~G 239 (309)
++..++++. +..+.+++.+.++|+|||
T Consensus 189 ~~~~vl~~l~~~~~~~~l~~~~~~LkpgG 217 (287)
T PRK12335 189 LSTVVLMFLNRERIPAIIKNMQEHTNPGG 217 (287)
T ss_pred EEcchhhhCCHHHHHHHHHHHHHhcCCCc
Confidence 999888764 478899999999999999
No 60
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.43 E-value=5.7e-12 Score=99.46 Aligned_cols=107 Identities=15% Similarity=0.157 Sum_probs=80.5
Q ss_pred HHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCC
Q 021691 125 FSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPY 204 (309)
Q Consensus 125 ~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~ 204 (309)
.+.......++++|||+|||+|..+..+++..+..+|+++|.++.+++.+++++..++.. ++.+...+.... ...
T Consensus 10 ~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~-~~~ 84 (124)
T TIGR02469 10 LTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS----NIVIVEGDAPEA-LED 84 (124)
T ss_pred HHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC----ceEEEecccccc-Chh
Confidence 344444455678999999999999999998877789999999999999999999887652 344443332211 112
Q ss_pred CCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691 205 IVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 205 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G 239 (309)
...+||+|++.... .....+++.+.++|+++|
T Consensus 85 ~~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~gG 116 (124)
T TIGR02469 85 SLPEPDRVFIGGSG---GLLQEILEAIWRRLRPGG 116 (124)
T ss_pred hcCCCCEEEECCcc---hhHHHHHHHHHHHcCCCC
Confidence 23589999996543 345789999999999999
No 61
>PRK04266 fibrillarin; Provisional
Probab=99.43 E-value=9e-12 Score=109.33 Aligned_cols=153 Identities=14% Similarity=0.183 Sum_probs=98.3
Q ss_pred CCceeecccHHH-HHHHHhh---CcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCC
Q 021691 110 TGLVCHWPSEDV-LAFFSLS---HADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAF 185 (309)
Q Consensus 110 tG~~~~W~sa~~-La~~l~~---~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~ 185 (309)
.+++ +|..... ++.+++. ...+.+|.+|||+|||+|..++.++...+..+|+++|.++.|++.+.+++...
T Consensus 45 ~~~~-~~~~~r~~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---- 119 (226)
T PRK04266 45 VEYR-EWNPRRSKLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---- 119 (226)
T ss_pred cEEE-EECCCccchHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc----
Confidence 3444 6655332 4444443 34566889999999999999999999876568999999999999888776542
Q ss_pred CCCceEEEEeeCCCCC-CCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee------cCC--chHHH
Q 021691 186 GGTTVKSMTLHWNQDD-FPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP------KRG--DSLDK 256 (309)
Q Consensus 186 ~~~~v~~~~l~w~~~~-~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~------~r~--~~~~~ 256 (309)
.++.....|-.... ......+||+|++. .. .+.....+++.+.++||||| .+++.-+ ... ...+.
T Consensus 120 --~nv~~i~~D~~~~~~~~~l~~~~D~i~~d-~~-~p~~~~~~L~~~~r~LKpGG--~lvI~v~~~~~d~~~~~~~~~~~ 193 (226)
T PRK04266 120 --KNIIPILADARKPERYAHVVEKVDVIYQD-VA-QPNQAEIAIDNAEFFLKDGG--YLLLAIKARSIDVTKDPKEIFKE 193 (226)
T ss_pred --CCcEEEECCCCCcchhhhccccCCEEEEC-CC-ChhHHHHHHHHHHHhcCCCc--EEEEEEecccccCcCCHHHHHHH
Confidence 13344333332211 01123569999963 21 12223456899999999999 5555211 111 12234
Q ss_pred HHHHHHhCCCeEEEEec
Q 021691 257 FLEEIEGNHLHFSIIEN 273 (309)
Q Consensus 257 f~~~~~~~G~~~~~~~~ 273 (309)
..+.++++||+......
T Consensus 194 ~~~~l~~aGF~~i~~~~ 210 (226)
T PRK04266 194 EIRKLEEGGFEILEVVD 210 (226)
T ss_pred HHHHHHHcCCeEEEEEc
Confidence 56888899999866554
No 62
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.42 E-value=9.5e-12 Score=110.68 Aligned_cols=142 Identities=20% Similarity=0.201 Sum_probs=102.0
Q ss_pred ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691 115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT 194 (309)
Q Consensus 115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ 194 (309)
-++....+.+.+..... ..+++|||+|||+|..++.+++..+..+|+++|.++.+++.++.|+..++.. ++.+..
T Consensus 69 p~~~~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~----~~~~~~ 143 (251)
T TIGR03534 69 PRPDTEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD----NVTFLQ 143 (251)
T ss_pred CCCChHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC----eEEEEE
Confidence 34555666666554432 2456999999999999999999877789999999999999999999988762 466666
Q ss_pred eeCCCCCCCCCCCCccEEEEcCCCCCcc--------------------------cHHHHHHHHHHHHhcCCCeEEEEEee
Q 021691 195 LHWNQDDFPYIVDTFDVIVASDCTFFKE--------------------------FHKDLARIIKFLLKKVGPSEALFFSP 248 (309)
Q Consensus 195 l~w~~~~~~~~~~~fDvIi~~d~ly~~~--------------------------~~~~ll~~l~~lLk~~G~~~~ii~~~ 248 (309)
.++... ...++||+|+++.+.+... ....+++.+.++|+++| .+++...
T Consensus 144 ~d~~~~---~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG--~~~~~~~ 218 (251)
T TIGR03534 144 SDWFEP---LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGG--WLLLEIG 218 (251)
T ss_pred Cchhcc---CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCC--EEEEEEC
Confidence 665432 2346899999966544311 12467888999999999 4444332
Q ss_pred cCCchHHHHHHHHHhCCCeE
Q 021691 249 KRGDSLDKFLEEIEGNHLHF 268 (309)
Q Consensus 249 ~r~~~~~~f~~~~~~~G~~~ 268 (309)
....+.+.+.++++||..
T Consensus 219 --~~~~~~~~~~l~~~gf~~ 236 (251)
T TIGR03534 219 --YDQGEAVRALFEAAGFAD 236 (251)
T ss_pred --ccHHHHHHHHHHhCCCCc
Confidence 233456777888889864
No 63
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.42 E-value=3e-12 Score=114.09 Aligned_cols=107 Identities=19% Similarity=0.249 Sum_probs=82.7
Q ss_pred CCCCeEEEeCCCCChhhHHHHHh--cCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691 133 FRSKRVIELGSGYGLAGLVIAAT--TEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD 210 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~--~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD 210 (309)
.++.+|||+|||+|..+..+++. .+..+|+++|.++.|++.+++++..++.. .++++...+.... + ...+|
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~---~~v~~~~~d~~~~--~--~~~~D 127 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP---TPVDVIEGDIRDI--A--IENAS 127 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC---CCeEEEeCChhhC--C--CCCCC
Confidence 36789999999999999888774 35679999999999999999999887652 3456655544322 1 24589
Q ss_pred EEEEcCCCCCcc--cHHHHHHHHHHHHhcCCCeEEEEEee
Q 021691 211 VIVASDCTFFKE--FHKDLARIIKFLLKKVGPSEALFFSP 248 (309)
Q Consensus 211 vIi~~d~ly~~~--~~~~ll~~l~~lLk~~G~~~~ii~~~ 248 (309)
+|+++.++++.. ....+++.+++.|+||| .+++...
T Consensus 128 ~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG--~l~l~e~ 165 (247)
T PRK15451 128 MVVLNFTLQFLEPSERQALLDKIYQGLNPGG--ALVLSEK 165 (247)
T ss_pred EEehhhHHHhCCHHHHHHHHHHHHHhcCCCC--EEEEEEe
Confidence 999988887643 45789999999999999 5666553
No 64
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.41 E-value=8.3e-12 Score=110.08 Aligned_cols=141 Identities=16% Similarity=0.109 Sum_probs=103.6
Q ss_pred HHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC
Q 021691 123 AFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF 202 (309)
Q Consensus 123 a~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~ 202 (309)
..|+.......++++|||+|||+|..+..+++. +.+|+++|.++.+++.+++++..++. .+.+...++....
T Consensus 37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~- 108 (233)
T PRK05134 37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGL-----KIDYRQTTAEELA- 108 (233)
T ss_pred HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCC-----ceEEEecCHHHhh-
Confidence 456666555668899999999999999888775 46899999999999999998877654 2344444433221
Q ss_pred CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC----------------------------CchH
Q 021691 203 PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR----------------------------GDSL 254 (309)
Q Consensus 203 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r----------------------------~~~~ 254 (309)
....++||+|+++.++++..+...+++.+.++|+++| .+++....+ -.+.
T Consensus 109 ~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG--~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (233)
T PRK05134 109 AEHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGG--LVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKP 186 (233)
T ss_pred hhcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCc--EEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCH
Confidence 1234689999999999998899999999999999999 454443211 1133
Q ss_pred HHHHHHHHhCCCeEEEEec
Q 021691 255 DKFLEEIEGNHLHFSIIEN 273 (309)
Q Consensus 255 ~~f~~~~~~~G~~~~~~~~ 273 (309)
.++.+.++++||.+.....
T Consensus 187 ~~~~~~l~~~Gf~~v~~~~ 205 (233)
T PRK05134 187 SELAAWLRQAGLEVQDITG 205 (233)
T ss_pred HHHHHHHHHCCCeEeeeee
Confidence 4577788889998765543
No 65
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.40 E-value=7.7e-12 Score=110.86 Aligned_cols=108 Identities=16% Similarity=0.154 Sum_probs=83.7
Q ss_pred CCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691 134 RSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV 211 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv 211 (309)
++.+|||+|||+|..+..+++.. ++.+|+++|.++.|++.+++++...+.. .++.+...++.... ...+|+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~---~~v~~~~~d~~~~~----~~~~d~ 125 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE---IPVEILCNDIRHVE----IKNASM 125 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC---CCeEEEECChhhCC----CCCCCE
Confidence 67799999999999999888764 5679999999999999999998765431 34666665554322 235899
Q ss_pred EEEcCCCCCc--ccHHHHHHHHHHHHhcCCCeEEEEEeecC
Q 021691 212 IVASDCTFFK--EFHKDLARIIKFLLKKVGPSEALFFSPKR 250 (309)
Q Consensus 212 Ii~~d~ly~~--~~~~~ll~~l~~lLk~~G~~~~ii~~~~r 250 (309)
|+++.++++. .+...+++.+.+.|+||| .+++..+.+
T Consensus 126 v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG--~l~i~d~~~ 164 (239)
T TIGR00740 126 VILNFTLQFLPPEDRIALLTKIYEGLNPNG--VLVLSEKFR 164 (239)
T ss_pred EeeecchhhCCHHHHHHHHHHHHHhcCCCe--EEEEeeccc
Confidence 9998888775 356789999999999999 666665433
No 66
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.39 E-value=2.2e-11 Score=101.90 Aligned_cols=130 Identities=16% Similarity=0.146 Sum_probs=102.6
Q ss_pred cCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCc
Q 021691 130 ADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTF 209 (309)
Q Consensus 130 ~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~f 209 (309)
..+.+|.+++|+|||||.+++.+|...+..+|+++|.++++++.+++|++..+. .++.+...+--+. .+.. .+|
T Consensus 30 L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~----~n~~vv~g~Ap~~-L~~~-~~~ 103 (187)
T COG2242 30 LRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV----DNLEVVEGDAPEA-LPDL-PSP 103 (187)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC----CcEEEEeccchHh-hcCC-CCC
Confidence 456789999999999999999999888889999999999999999999999986 3565554432211 1222 279
Q ss_pred cEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCC-eEEEEe
Q 021691 210 DVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHL-HFSIIE 272 (309)
Q Consensus 210 DvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~-~~~~~~ 272 (309)
|.|+...- ...+.+++++...|+++| -++.....-++....++.+++.|+ .+..+.
T Consensus 104 daiFIGGg----~~i~~ile~~~~~l~~gg---rlV~naitlE~~~~a~~~~~~~g~~ei~~v~ 160 (187)
T COG2242 104 DAIFIGGG----GNIEEILEAAWERLKPGG---RLVANAITLETLAKALEALEQLGGREIVQVQ 160 (187)
T ss_pred CEEEECCC----CCHHHHHHHHHHHcCcCC---eEEEEeecHHHHHHHHHHHHHcCCceEEEEE
Confidence 99998644 567899999999999999 455566667788888999999999 554443
No 67
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.39 E-value=2e-11 Score=111.97 Aligned_cols=125 Identities=14% Similarity=0.115 Sum_probs=91.4
Q ss_pred CeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEc
Q 021691 136 KRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVAS 215 (309)
Q Consensus 136 ~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~ 215 (309)
++|||+|||+|.+++.+++..+..+|+++|+++.+++.+++|+..+++. .++.+...|+.+. ....+||+|+++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~---~~i~~~~~D~~~~---l~~~~fDlIvsN 208 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLE---DRVTLIESDLFAA---LPGRRYDLIVSN 208 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC---CcEEEEECchhhh---CCCCCccEEEEC
Confidence 6899999999999999999887889999999999999999999998863 3567766665322 123579999996
Q ss_pred CCCCCc-------------------------ccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEE
Q 021691 216 DCTFFK-------------------------EFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSI 270 (309)
Q Consensus 216 d~ly~~-------------------------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~ 270 (309)
.+.... ..+..+++.+.++|++|| .++ +..... ...+.+.+.+.|+.+-.
T Consensus 209 PPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG--~l~-~E~g~~--~~~~~~~~~~~~~~~~~ 283 (307)
T PRK11805 209 PPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDG--VLV-VEVGNS--RVHLEEAYPDVPFTWLE 283 (307)
T ss_pred CCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCC--EEE-EEECcC--HHHHHHHHhhCCCEEEE
Confidence 543211 124577889999999999 343 333332 23466677777776543
Q ss_pred E
Q 021691 271 I 271 (309)
Q Consensus 271 ~ 271 (309)
.
T Consensus 284 ~ 284 (307)
T PRK11805 284 F 284 (307)
T ss_pred e
Confidence 3
No 68
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.39 E-value=1.6e-11 Score=107.43 Aligned_cols=132 Identities=16% Similarity=0.125 Sum_probs=96.3
Q ss_pred cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691 132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV 211 (309)
Q Consensus 132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv 211 (309)
...+.+|||+|||+|..+..+++. ..+|+++|.++.+++.+++++..++.. ++.+...+...... ...++||+
T Consensus 43 ~~~~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~----~~~~~~~d~~~~~~-~~~~~~D~ 115 (224)
T TIGR01983 43 PLFGLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDPLL----KIEYRCTSVEDLAE-KGAKSFDV 115 (224)
T ss_pred CCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcCCC----ceEEEeCCHHHhhc-CCCCCccE
Confidence 346889999999999999887775 457999999999999999998877651 34444443322211 11368999
Q ss_pred EEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCC----------------------------chHHHHHHHHHh
Q 021691 212 IVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRG----------------------------DSLDKFLEEIEG 263 (309)
Q Consensus 212 Ii~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~----------------------------~~~~~f~~~~~~ 263 (309)
|+++.++++..+...+++.+.++|+++| .+++....+. .+..++.+.+++
T Consensus 116 i~~~~~l~~~~~~~~~l~~~~~~L~~gG--~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 193 (224)
T TIGR01983 116 VTCMEVLEHVPDPQAFIRACAQLLKPGG--ILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLES 193 (224)
T ss_pred EEehhHHHhCCCHHHHHHHHHHhcCCCc--EEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHH
Confidence 9999999999999999999999999999 4544432111 022356677888
Q ss_pred CCCeEEEEe
Q 021691 264 NHLHFSIIE 272 (309)
Q Consensus 264 ~G~~~~~~~ 272 (309)
+||.+..+.
T Consensus 194 ~G~~i~~~~ 202 (224)
T TIGR01983 194 AGLRVKDVK 202 (224)
T ss_pred cCCeeeeee
Confidence 888876554
No 69
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.38 E-value=2.6e-11 Score=105.63 Aligned_cols=106 Identities=13% Similarity=0.180 Sum_probs=83.0
Q ss_pred cCCCCeEEEeCCCCChhhHHHHHhcCC-cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691 132 MFRSKRVIELGSGYGLAGLVIAATTEA-LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD 210 (309)
Q Consensus 132 ~~~g~~VLELG~GtG~~~l~la~~~~~-~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD 210 (309)
..++.+|||+|||+|..+..+++..+. .+++++|.++.+++.++++.. . ..++.+...+..+. +...++||
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~---~~~i~~~~~d~~~~--~~~~~~~D 108 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---L---PLNIEFIQADAEAL--PFEDNSFD 108 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---c---CCCceEEecchhcC--CCCCCcEE
Confidence 337889999999999999998887654 589999999999999998865 1 12344444444322 23346899
Q ss_pred EEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 211 VIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 211 vIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
+|+++..+++..+...+++.+.++|++|| .+++..
T Consensus 109 ~i~~~~~~~~~~~~~~~l~~~~~~L~~gG--~l~~~~ 143 (223)
T TIGR01934 109 AVTIAFGLRNVTDIQKALREMYRVLKPGG--RLVILE 143 (223)
T ss_pred EEEEeeeeCCcccHHHHHHHHHHHcCCCc--EEEEEE
Confidence 99999999888899999999999999999 555544
No 70
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.38 E-value=1.8e-12 Score=101.65 Aligned_cols=106 Identities=24% Similarity=0.219 Sum_probs=81.6
Q ss_pred CCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEE
Q 021691 135 SKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVA 214 (309)
Q Consensus 135 g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~ 214 (309)
|.+|||+|||+|.+.+.+++.. ..+++++|+++.+++.++.|+..++.. .++.+...|+..........+||+|++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~D~Iv~ 76 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLD---DRVEVIVGDARDLPEPLPDGKFDLIVT 76 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTT---TTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCC---ceEEEEECchhhchhhccCceeEEEEE
Confidence 5689999999999999988875 689999999999999999999998773 457777666643332344688999999
Q ss_pred cCCCCCc--------ccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691 215 SDCTFFK--------EFHKDLARIIKFLLKKVGPSEALFF 246 (309)
Q Consensus 215 ~d~ly~~--------~~~~~ll~~l~~lLk~~G~~~~ii~ 246 (309)
+.+.... .....+++.+.++|+++| .+++.
T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG--~~~~~ 114 (117)
T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGG--VLVFI 114 (117)
T ss_dssp --STTSBTT----GGCHHHHHHHHHHHHEEEEE--EEEEE
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHHcCCCe--EEEEE
Confidence 7665532 245788999999999999 44443
No 71
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.37 E-value=4.6e-12 Score=119.84 Aligned_cols=136 Identities=24% Similarity=0.169 Sum_probs=96.6
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC--CCCCCCCcc
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD--FPYIVDTFD 210 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~--~~~~~~~fD 210 (309)
.+|++|||+|||+|.+++.++. .++.+|+++|.++.+++.+++|+..|++.. .++++...|.-+.. ......+||
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~-~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~--~~v~~i~~D~~~~l~~~~~~~~~fD 295 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALM-GGCSQVVSVDTSQEALDIARQNVELNKLDL--SKAEFVRDDVFKLLRTYRDRGEKFD 295 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCC--CcEEEEEccHHHHHHHHHhcCCCCC
Confidence 4689999999999999987554 466799999999999999999999998731 24555554432211 011235799
Q ss_pred EEEEcCCCCCcc----------cHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHH----HhCCCeEEEEecc
Q 021691 211 VIVASDCTFFKE----------FHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEI----EGNHLHFSIIENY 274 (309)
Q Consensus 211 vIi~~d~ly~~~----------~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~----~~~G~~~~~~~~~ 274 (309)
+|++ |+.|+.. .+..++....++|+++| .++.+++...-+.+.|.+.+ .++|-.+..++..
T Consensus 296 lVil-DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG--~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l~~~ 370 (396)
T PRK15128 296 VIVM-DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGG--ILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQF 370 (396)
T ss_pred EEEE-CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCe--EEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEEEc
Confidence 9998 5555432 35566677889999999 67777776666666666554 4557777766653
No 72
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.37 E-value=1.8e-11 Score=110.50 Aligned_cols=142 Identities=21% Similarity=0.253 Sum_probs=102.1
Q ss_pred ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691 115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT 194 (309)
Q Consensus 115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ 194 (309)
-.|..+.|.+.+.......++.+|||+|||+|..++.++...+..+|+++|+++.+++.+++|+. +.. ..++.+..
T Consensus 89 pr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~---~~~i~~~~ 164 (275)
T PRK09328 89 PRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGL---GARVEFLQ 164 (275)
T ss_pred CCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCC---CCcEEEEE
Confidence 34556777777765444557789999999999999999998877899999999999999999988 222 23567776
Q ss_pred eeCCCCCCCCCCCCccEEEEcCCCCCc--------------------------ccHHHHHHHHHHHHhcCCCeEEEEEee
Q 021691 195 LHWNQDDFPYIVDTFDVIVASDCTFFK--------------------------EFHKDLARIIKFLLKKVGPSEALFFSP 248 (309)
Q Consensus 195 l~w~~~~~~~~~~~fDvIi~~d~ly~~--------------------------~~~~~ll~~l~~lLk~~G~~~~ii~~~ 248 (309)
.|+.... ..++||+|+++.+.... ..+..+++.+.++|++|| .+++ ..
T Consensus 165 ~d~~~~~---~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG--~l~~-e~ 238 (275)
T PRK09328 165 GDWFEPL---PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGG--WLLL-EI 238 (275)
T ss_pred ccccCcC---CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCC--EEEE-EE
Confidence 6664321 24689999996543321 123567788889999999 4444 32
Q ss_pred cCCchHHHHHHHHHhCCCe
Q 021691 249 KRGDSLDKFLEEIEGNHLH 267 (309)
Q Consensus 249 ~r~~~~~~f~~~~~~~G~~ 267 (309)
. ....+.+.+.+.+.||.
T Consensus 239 g-~~~~~~~~~~l~~~gf~ 256 (275)
T PRK09328 239 G-YDQGEAVRALLAAAGFA 256 (275)
T ss_pred C-chHHHHHHHHHHhCCCc
Confidence 2 22335677788888886
No 73
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.37 E-value=1.2e-11 Score=113.44 Aligned_cols=131 Identities=15% Similarity=0.116 Sum_probs=86.6
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCC-CCCceEEEEeeCCCCCCCCCCCCccE
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAF-GGTTVKSMTLHWNQDDFPYIVDTFDV 211 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~-~~~~v~~~~l~w~~~~~~~~~~~fDv 211 (309)
.++.+|||+|||+|.+++.+++. +.+|+++|+++.|++.+++++...+... ....+.+...|+. ...++||+
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~-----~l~~~fD~ 215 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE-----SLSGKYDT 215 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh-----hcCCCcCE
Confidence 46789999999999999998885 5699999999999999999987643210 0123444444432 22468999
Q ss_pred EEEcCCCCCccc--HHHHHHHHHHHHhcCCCeEEEEEeecC-----------------------CchHHHHHHHHHhCCC
Q 021691 212 IVASDCTFFKEF--HKDLARIIKFLLKKVGPSEALFFSPKR-----------------------GDSLDKFLEEIEGNHL 266 (309)
Q Consensus 212 Ii~~d~ly~~~~--~~~ll~~l~~lLk~~G~~~~ii~~~~r-----------------------~~~~~~f~~~~~~~G~ 266 (309)
|++.++++|..+ ...+++.+.++ .+++ .++.+.+.. ..+.+++.+.++++||
T Consensus 216 Vv~~~vL~H~p~~~~~~ll~~l~~l-~~g~--liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf 292 (315)
T PLN02585 216 VTCLDVLIHYPQDKADGMIAHLASL-AEKR--LIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGW 292 (315)
T ss_pred EEEcCEEEecCHHHHHHHHHHHHhh-cCCE--EEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCC
Confidence 999999876433 33455555543 3333 333222110 0135677888888898
Q ss_pred eEEEEec
Q 021691 267 HFSIIEN 273 (309)
Q Consensus 267 ~~~~~~~ 273 (309)
.+...+.
T Consensus 293 ~v~~~~~ 299 (315)
T PLN02585 293 KVARREM 299 (315)
T ss_pred EEEEEEE
Confidence 8876554
No 74
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.36 E-value=1.7e-11 Score=106.39 Aligned_cols=126 Identities=18% Similarity=0.187 Sum_probs=97.4
Q ss_pred cCcCCCCeEEEeCCCCChhhHHHHHhcCC------cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC
Q 021691 130 ADMFRSKRVIELGSGYGLAGLVIAATTEA------LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP 203 (309)
Q Consensus 130 ~~~~~g~~VLELG~GtG~~~l~la~~~~~------~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~ 203 (309)
.+...|.+|||++||||.++..+.+..+. .+|+..|+||+||+..+++....++... ..+..... +.+..+
T Consensus 96 L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~-~~~~w~~~--dAE~Lp 172 (296)
T KOG1540|consen 96 LGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKAS-SRVEWVEG--DAEDLP 172 (296)
T ss_pred cCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcC-CceEEEeC--CcccCC
Confidence 35567899999999999999988887766 7999999999999999999877666321 12322222 345567
Q ss_pred CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHH
Q 021691 204 YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFL 258 (309)
Q Consensus 204 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~ 258 (309)
+++.+||...++.-+-+..+++..+++.+|+|||||+..++-+.....+.+..|.
T Consensus 173 Fdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy 227 (296)
T KOG1540|consen 173 FDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFY 227 (296)
T ss_pred CCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHH
Confidence 7889999999999898899999999999999999996655555554444444443
No 75
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.36 E-value=7e-12 Score=127.01 Aligned_cols=132 Identities=20% Similarity=0.113 Sum_probs=97.0
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI 212 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI 212 (309)
.+|++|||||||+|.+++.+|+. |+.+|+++|.|+.+++.+++|+..|++.. .++++...|..+.. .....+||+|
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~--~~v~~i~~D~~~~l-~~~~~~fDlI 612 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSG--RQHRLIQADCLAWL-KEAREQFDLI 612 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCc--cceEEEEccHHHHH-HHcCCCcCEE
Confidence 36899999999999999997774 67789999999999999999999998741 24555555432111 1114589999
Q ss_pred EEcCCCCCc------------ccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEec
Q 021691 213 VASDCTFFK------------EFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIEN 273 (309)
Q Consensus 213 i~~d~ly~~------------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~ 273 (309)
++. +.|+. .++..++..+.++|++|| .+++.+..+... .-.+.+.+.|+.++.++.
T Consensus 613 ilD-PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG--~l~~~~~~~~~~--~~~~~~~~~g~~~~~i~~ 680 (702)
T PRK11783 613 FID-PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGG--TLYFSNNKRGFK--MDEEGLAKLGLKAEEITA 680 (702)
T ss_pred EEC-CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCC--EEEEEeCCccCC--hhHHHHHhCCCeEEEEec
Confidence 994 44432 245678889999999999 555555444333 337778889999988775
No 76
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=2.4e-11 Score=101.44 Aligned_cols=127 Identities=17% Similarity=0.155 Sum_probs=84.3
Q ss_pred cCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCc
Q 021691 130 ADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTF 209 (309)
Q Consensus 130 ~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~f 209 (309)
.....|++|+|||||||.+++.+ +.+|+.+|+++|+++++++.+++|+...+ .+|.+..-| .......|
T Consensus 41 ~g~l~g~~V~DlG~GTG~La~ga-~~lGa~~V~~vdiD~~a~ei~r~N~~~l~-----g~v~f~~~d-----v~~~~~~~ 109 (198)
T COG2263 41 RGDLEGKTVLDLGAGTGILAIGA-ALLGASRVLAVDIDPEALEIARANAEELL-----GDVEFVVAD-----VSDFRGKF 109 (198)
T ss_pred cCCcCCCEEEEcCCCcCHHHHHH-HhcCCcEEEEEecCHHHHHHHHHHHHhhC-----CceEEEEcc-----hhhcCCcc
Confidence 35678999999999999999985 55789999999999999999999999843 345555443 33445789
Q ss_pred cEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEe
Q 021691 210 DVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIE 272 (309)
Q Consensus 210 DvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~ 272 (309)
|.++++.++-....+ .=...+...|.-.. + +.+..+..+.+-......++|+.+....
T Consensus 110 dtvimNPPFG~~~rh-aDr~Fl~~Ale~s~---v-VYsiH~a~~~~f~~~~~~~~G~~v~~~~ 167 (198)
T COG2263 110 DTVIMNPPFGSQRRH-ADRPFLLKALEISD---V-VYSIHKAGSRDFVEKFAADLGGTVTHIE 167 (198)
T ss_pred ceEEECCCCcccccc-CCHHHHHHHHHhhh---e-EEEeeccccHHHHHHHHHhcCCeEEEEE
Confidence 999997765432111 11122222332222 3 3343443454545566788898876654
No 77
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.35 E-value=2.5e-11 Score=104.32 Aligned_cols=135 Identities=14% Similarity=0.128 Sum_probs=90.0
Q ss_pred HHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCC
Q 021691 125 FSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPY 204 (309)
Q Consensus 125 ~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~ 204 (309)
.+.......++.+|||+|||+|..++.+++..++.+|+++|.++++++.+++|++.++.. ++++...+.... ...
T Consensus 31 ~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~----~v~~~~~d~~~~-~~~ 105 (196)
T PRK07402 31 LLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK----NVEVIEGSAPEC-LAQ 105 (196)
T ss_pred HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----CeEEEECchHHH-Hhh
Confidence 334444455788999999999999999887767789999999999999999999988762 455544433211 111
Q ss_pred CCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHH---hCCCeEEEE
Q 021691 205 IVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIE---GNHLHFSII 271 (309)
Q Consensus 205 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~---~~G~~~~~~ 271 (309)
....+|.|+.. .......+++.+.++|+||| .+++.... .++.....+.++ ..++.+..+
T Consensus 106 ~~~~~d~v~~~----~~~~~~~~l~~~~~~LkpgG--~li~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 168 (196)
T PRK07402 106 LAPAPDRVCIE----GGRPIKEILQAVWQYLKPGG--RLVATASS-LEGLYAISEGLAQLQARNIEVVQA 168 (196)
T ss_pred CCCCCCEEEEE----CCcCHHHHHHHHHHhcCCCe--EEEEEeec-HHHHHHHHHHHHhcCCCCceEEEE
Confidence 22346776552 12456889999999999999 55555443 233333334443 445555443
No 78
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.35 E-value=4.6e-11 Score=108.63 Aligned_cols=142 Identities=17% Similarity=0.154 Sum_probs=95.7
Q ss_pred cccHHHHHHHHhhCc-CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691 116 WPSEDVLAFFSLSHA-DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT 194 (309)
Q Consensus 116 W~sa~~La~~l~~~~-~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ 194 (309)
.|..+.|.+.+.... ...++.+|||+|||+|.+++.++...+..+|+++|+++.+++.+++|+..++.. .++.+..
T Consensus 95 r~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~---~~v~~~~ 171 (284)
T TIGR00536 95 RPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLE---HRVEFIQ 171 (284)
T ss_pred CCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEE
Confidence 344455555544321 111236999999999999999999877789999999999999999999998873 3477777
Q ss_pred eeCCCCCCCCCCCCccEEEEcCCCCCc-------------------------ccHHHHHHHHHHHHhcCCCeEEEEEeec
Q 021691 195 LHWNQDDFPYIVDTFDVIVASDCTFFK-------------------------EFHKDLARIIKFLLKKVGPSEALFFSPK 249 (309)
Q Consensus 195 l~w~~~~~~~~~~~fDvIi~~d~ly~~-------------------------~~~~~ll~~l~~lLk~~G~~~~ii~~~~ 249 (309)
.||.... ...+||+|+++.+.... ..+..++..+.++|+++| .+++...
T Consensus 172 ~d~~~~~---~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG---~l~~e~g 245 (284)
T TIGR00536 172 SNLFEPL---AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNG---FLVCEIG 245 (284)
T ss_pred CchhccC---cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCC---EEEEEEC
Confidence 7765321 22379999996433211 135567888899999999 3444333
Q ss_pred CCchHHHHHHHHH-hCCCe
Q 021691 250 RGDSLDKFLEEIE-GNHLH 267 (309)
Q Consensus 250 r~~~~~~f~~~~~-~~G~~ 267 (309)
. .......+.+. +.||.
T Consensus 246 ~-~q~~~~~~~~~~~~~~~ 263 (284)
T TIGR00536 246 N-WQQKSLKELLRIKFTWY 263 (284)
T ss_pred c-cHHHHHHHHHHhcCCCc
Confidence 2 22234455555 35664
No 79
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.35 E-value=1.4e-11 Score=101.81 Aligned_cols=159 Identities=16% Similarity=0.181 Sum_probs=115.7
Q ss_pred eeecccccCCCCceeecc---cHHHHHHHHhhCcC---cCCCC-eEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHH
Q 021691 100 EICNRCNIDNTGLVCHWP---SEDVLAFFSLSHAD---MFRSK-RVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVD 172 (309)
Q Consensus 100 ~~~~~~~~~~tG~~~~W~---sa~~La~~l~~~~~---~~~g~-~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~ 172 (309)
++.|-..++.+|- +|= +.+.+..|+..+.. +-... +|||||||.|.+-..|++.-=..+.+++|+++.+++
T Consensus 28 El~Nfr~hgd~GE--vWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~ 105 (227)
T KOG1271|consen 28 ELTNFREHGDEGE--VWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVE 105 (227)
T ss_pred HHhhcccCCCccc--eecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHH
Confidence 3444456788887 584 45668889888765 22333 999999999999888887643456999999999999
Q ss_pred HHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCC--------cccHHHHHHHHHHHHhcCCCeEEE
Q 021691 173 YIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFF--------KEFHKDLARIIKFLLKKVGPSEAL 244 (309)
Q Consensus 173 ~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~--------~~~~~~ll~~l~~lLk~~G~~~~i 244 (309)
.|+..++.++.. ..|++.++|...+ ....++||+|+--..+-. ...+...+..+.++|+|+| .++
T Consensus 106 LA~niAe~~~~~---n~I~f~q~DI~~~--~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~g--ifv 178 (227)
T KOG1271|consen 106 LAQNIAERDGFS---NEIRFQQLDITDP--DFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGG--IFV 178 (227)
T ss_pred HHHHHHHhcCCC---cceeEEEeeccCC--cccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCc--EEE
Confidence 999888889884 4589999988765 344567888765322111 1122456788999999999 555
Q ss_pred EEeecCCchHHHHHHHHHhCCCeEE
Q 021691 245 FFSPKRGDSLDKFLEEIEGNHLHFS 269 (309)
Q Consensus 245 i~~~~r~~~~~~f~~~~~~~G~~~~ 269 (309)
|.+ ...|.+++.+.+...||.+.
T Consensus 179 ItS--CN~T~dELv~~f~~~~f~~~ 201 (227)
T KOG1271|consen 179 ITS--CNFTKDELVEEFENFNFEYL 201 (227)
T ss_pred EEe--cCccHHHHHHHHhcCCeEEE
Confidence 544 34688899999999888753
No 80
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.35 E-value=9.1e-12 Score=107.00 Aligned_cols=128 Identities=11% Similarity=0.069 Sum_probs=93.0
Q ss_pred CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC-CCCCCCccEE
Q 021691 134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF-PYIVDTFDVI 212 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~-~~~~~~fDvI 212 (309)
.+.+|||||||+|.++..+|+..+...|+++|.++.+++.+++++..+++ .++.+...+...... ....+.+|.|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l----~ni~~i~~d~~~~~~~~~~~~~~d~v 91 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL----KNLHVLCGDANELLDKFFPDGSLSKV 91 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC----CCEEEEccCHHHHHHhhCCCCceeEE
Confidence 35689999999999999999988888999999999999999999988776 256666555432111 1223589999
Q ss_pred EEcCCCCCcc-c-------HHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCC-CeE
Q 021691 213 VASDCTFFKE-F-------HKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNH-LHF 268 (309)
Q Consensus 213 i~~d~ly~~~-~-------~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G-~~~ 268 (309)
+++.+..+.+ . .+.+++.+.++|++|| . +++.+........+.+.+.+.+ |..
T Consensus 92 ~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG--~-l~~~td~~~~~~~~~~~~~~~~~f~~ 153 (194)
T TIGR00091 92 FLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGG--V-IHFKTDNEPLFEDMLKVLSENDLFEN 153 (194)
T ss_pred EEECCCcCCCCCccccccCCHHHHHHHHHHhCCCC--E-EEEEeCCHHHHHHHHHHHHhCCCeEe
Confidence 9864332221 1 2679999999999999 4 4444444445566777887776 544
No 81
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.34 E-value=3.3e-11 Score=117.65 Aligned_cols=125 Identities=14% Similarity=0.184 Sum_probs=91.0
Q ss_pred CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691 134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV 213 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi 213 (309)
++.+|||+|||+|.+++.+++..+..+|+++|+|+.+++.+++|+..+++. .++.+...||-.. ...++||+|+
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~---~~v~~~~~D~~~~---~~~~~fDlIv 211 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVT---DRIQIIHSNWFEN---IEKQKFDFIV 211 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCc---cceeeeecchhhh---CcCCCccEEE
Confidence 356899999999999999988888889999999999999999999988763 3566666665322 1235799999
Q ss_pred EcCCCCCc--------------------------ccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCe
Q 021691 214 ASDCTFFK--------------------------EFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLH 267 (309)
Q Consensus 214 ~~d~ly~~--------------------------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~ 267 (309)
++.+.... ..+..+++.+.++|+++| .+++ ... ....+...+.+.+.||.
T Consensus 212 sNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG--~l~l-Eig-~~q~~~v~~~~~~~g~~ 287 (506)
T PRK01544 212 SNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNG--KIIL-EIG-FKQEEAVTQIFLDHGYN 287 (506)
T ss_pred ECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCC--EEEE-EEC-CchHHHHHHHHHhcCCC
Confidence 96543321 123456778889999999 4443 322 23345667777788886
Q ss_pred E
Q 021691 268 F 268 (309)
Q Consensus 268 ~ 268 (309)
.
T Consensus 288 ~ 288 (506)
T PRK01544 288 I 288 (506)
T ss_pred c
Confidence 4
No 82
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.34 E-value=2.9e-11 Score=104.77 Aligned_cols=107 Identities=16% Similarity=0.136 Sum_probs=79.1
Q ss_pred HHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCC
Q 021691 122 LAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQD 200 (309)
Q Consensus 122 La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~ 200 (309)
+..++.+.....++.+|||+|||+|..+..+++..+ ..+|+++|.++++++.+++|+..++.. .++++...|....
T Consensus 60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~---~~v~~~~~d~~~~ 136 (205)
T PRK13944 60 MVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW---GVVEVYHGDGKRG 136 (205)
T ss_pred HHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC---CcEEEEECCcccC
Confidence 334454544556788999999999999988888764 468999999999999999999988762 3456655554322
Q ss_pred CCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691 201 DFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 201 ~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G 239 (309)
. ....+||+|++.....+ +.+.+.+.|++||
T Consensus 137 ~--~~~~~fD~Ii~~~~~~~------~~~~l~~~L~~gG 167 (205)
T PRK13944 137 L--EKHAPFDAIIVTAAAST------IPSALVRQLKDGG 167 (205)
T ss_pred C--ccCCCccEEEEccCcch------hhHHHHHhcCcCc
Confidence 1 12368999999766543 3357888999999
No 83
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.33 E-value=1.4e-11 Score=104.80 Aligned_cols=103 Identities=22% Similarity=0.402 Sum_probs=80.2
Q ss_pred CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691 131 DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD 210 (309)
Q Consensus 131 ~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD 210 (309)
...++.++||||||.|..++.||+. +..|+++|.|+.+++.+++.++..++ .+++...|...... .+.||
T Consensus 27 ~~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l-----~i~~~~~Dl~~~~~---~~~yD 96 (192)
T PF03848_consen 27 PLLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGL-----DIRTRVADLNDFDF---PEEYD 96 (192)
T ss_dssp TTS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT------TEEEEE-BGCCBS----TTTEE
T ss_pred hhcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCc-----eeEEEEecchhccc---cCCcC
Confidence 4456789999999999999999997 77999999999999999988888777 36777777654432 35799
Q ss_pred EEEEcCCCCC--cccHHHHHHHHHHHHhcCCCeEEEE
Q 021691 211 VIVASDCTFF--KEFHKDLARIIKFLLKKVGPSEALF 245 (309)
Q Consensus 211 vIi~~d~ly~--~~~~~~ll~~l~~lLk~~G~~~~ii 245 (309)
+|++.-++++ .+.++.+++.++..++||| ..++
T Consensus 97 ~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG--~~li 131 (192)
T PF03848_consen 97 FIVSTVVFMFLQRELRPQIIENMKAATKPGG--YNLI 131 (192)
T ss_dssp EEEEESSGGGS-GGGHHHHHHHHHHTEEEEE--EEEE
T ss_pred EEEEEEEeccCCHHHHHHHHHHHHhhcCCcE--EEEE
Confidence 9998665554 6678899999999999999 4444
No 84
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.33 E-value=2.4e-11 Score=106.92 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=81.7
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI 212 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI 212 (309)
..+++|||+|||+|..+..+++..+..+|+++|.++.+++.++.+... ++.+...+... .+...++||+|
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--------~~~~~~~d~~~--~~~~~~~fD~v 102 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE--------NVQFICGDAEK--LPLEDSSFDLI 102 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC--------CCeEEecchhh--CCCCCCceeEE
Confidence 456799999999999999999887777899999999999988876431 23444444432 23345789999
Q ss_pred EEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 213 VASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 213 i~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
+++.++++..+...++..+.++|+++| .+++..
T Consensus 103 i~~~~l~~~~~~~~~l~~~~~~L~~~G--~l~~~~ 135 (240)
T TIGR02072 103 VSNLALQWCDDLSQALSELARVLKPGG--LLAFST 135 (240)
T ss_pred EEhhhhhhccCHHHHHHHHHHHcCCCc--EEEEEe
Confidence 999999999899999999999999999 455443
No 85
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.32 E-value=2.8e-12 Score=98.29 Aligned_cols=95 Identities=22% Similarity=0.345 Sum_probs=71.4
Q ss_pred EEEeCCCCChhhHHHHHhc---CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEE
Q 021691 138 VIELGSGYGLAGLVIAATT---EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVA 214 (309)
Q Consensus 138 VLELG~GtG~~~l~la~~~---~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~ 214 (309)
|||+|||+|.....++..+ +..+++++|++++|++.++++....+. ++++...|..+ .+...++||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-----~~~~~~~D~~~--l~~~~~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-----KVRFVQADARD--LPFSDGKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-----TSEEEESCTTC--HHHHSSSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-----ceEEEECCHhH--CcccCCCeeEEEE
Confidence 7999999999999998875 237999999999999999999877544 45666666543 2334579999999
Q ss_pred cCC-CCC--cccHHHHHHHHHHHHhcCC
Q 021691 215 SDC-TFF--KEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 215 ~d~-ly~--~~~~~~ll~~l~~lLk~~G 239 (309)
+.. +++ .+....+++.+.++|+|+|
T Consensus 74 ~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 74 SGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp -TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 554 433 5578899999999999986
No 86
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.32 E-value=4.3e-11 Score=111.09 Aligned_cols=132 Identities=15% Similarity=0.071 Sum_probs=96.6
Q ss_pred HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691 120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ 199 (309)
Q Consensus 120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~ 199 (309)
..|+..+.......+|.+|||.|||+|.+.+.++.. +.+|+++|+++.|++.++.|++.++.. .+.+...|..
T Consensus 168 ~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~----~i~~~~~D~~- 240 (329)
T TIGR01177 168 PKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIE----DFFVKRGDAT- 240 (329)
T ss_pred HHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCC----CCeEEecchh-
Confidence 567777766556678899999999999998886654 679999999999999999999988773 2444333332
Q ss_pred CCCCCCCCCccEEEEcCCCCCc----------ccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCC
Q 021691 200 DDFPYIVDTFDVIVASDCTFFK----------EFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHL 266 (309)
Q Consensus 200 ~~~~~~~~~fDvIi~~d~ly~~----------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~ 266 (309)
..+...++||+|+++ +.|.. .....+++.+.++|++|| .+++..+... .+.+.++++||
T Consensus 241 -~l~~~~~~~D~Iv~d-PPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG--~lv~~~~~~~----~~~~~~~~~g~ 309 (329)
T TIGR01177 241 -KLPLSSESVDAIATD-PPYGRSTTAAGDGLESLYERSLEEFHEVLKSEG--WIVYAVPTRI----DLESLAEDAFR 309 (329)
T ss_pred -cCCcccCCCCEEEEC-CCCcCcccccCCchHHHHHHHHHHHHHHccCCc--EEEEEEcCCC----CHHHHHhhcCc
Confidence 233335789999995 44432 225789999999999999 5555555442 24456788888
No 87
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.32 E-value=5.4e-11 Score=112.36 Aligned_cols=137 Identities=15% Similarity=0.125 Sum_probs=96.9
Q ss_pred HHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC
Q 021691 124 FFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP 203 (309)
Q Consensus 124 ~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~ 203 (309)
..+.....+.+|.+|||+|||+|.+++.+++..+ .+|+++|.++++++.+++++. +. .+++...++..
T Consensus 157 ~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g-~~V~giDlS~~~l~~A~~~~~--~l-----~v~~~~~D~~~---- 224 (383)
T PRK11705 157 DLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYG-VSVVGVTISAEQQKLAQERCA--GL-----PVEIRLQDYRD---- 224 (383)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhc--cC-----eEEEEECchhh----
Confidence 3444555667889999999999999998888654 599999999999999998873 22 24444444432
Q ss_pred CCCCCccEEEEcCCCCCc--ccHHHHHHHHHHHHhcCCCeEEEEEeecC--------------------CchHHHHHHHH
Q 021691 204 YIVDTFDVIVASDCTFFK--EFHKDLARIIKFLLKKVGPSEALFFSPKR--------------------GDSLDKFLEEI 261 (309)
Q Consensus 204 ~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~lLk~~G~~~~ii~~~~r--------------------~~~~~~f~~~~ 261 (309)
..++||.|++..++++. ...+.+++.+.++|+||| .+++..... -.+...+.+.
T Consensus 225 -l~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG--~lvl~~i~~~~~~~~~~~~i~~yifp~g~lps~~~i~~~- 300 (383)
T PRK11705 225 -LNGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDG--LFLLHTIGSNKTDTNVDPWINKYIFPNGCLPSVRQIAQA- 300 (383)
T ss_pred -cCCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCc--EEEEEEccCCCCCCCCCCCceeeecCCCcCCCHHHHHHH-
Confidence 24689999998888775 456789999999999999 454433110 0123444444
Q ss_pred HhCCCeEEEEeccCc
Q 021691 262 EGNHLHFSIIENYNA 276 (309)
Q Consensus 262 ~~~G~~~~~~~~~~~ 276 (309)
.+.||.+..++.+..
T Consensus 301 ~~~~~~v~d~~~~~~ 315 (383)
T PRK11705 301 SEGLFVMEDWHNFGA 315 (383)
T ss_pred HHCCcEEEEEecChh
Confidence 345888887766544
No 88
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.31 E-value=1e-10 Score=107.50 Aligned_cols=114 Identities=14% Similarity=0.235 Sum_probs=88.7
Q ss_pred HHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC
Q 021691 124 FFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP 203 (309)
Q Consensus 124 ~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~ 203 (309)
..+.......++.+|||+|||+|..++.+++.++..+++++|. |.+++.+++|+...++. .++++...|......
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~---~rv~~~~~d~~~~~~- 213 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVA---DRMRGIAVDIYKESY- 213 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCcc---ceEEEEecCccCCCC-
Confidence 3344444555678999999999999999999988889999996 89999999999988873 456776665443221
Q ss_pred CCCCCccEEEEcCCCCCccc--HHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 204 YIVDTFDVIVASDCTFFKEF--HKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 204 ~~~~~fDvIi~~d~ly~~~~--~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
+.+|+|+.+.++|+..+ ...+++.+++.|+||| .+++..
T Consensus 214 ---~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG--~l~i~d 254 (306)
T TIGR02716 214 ---PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGG--RLLILD 254 (306)
T ss_pred ---CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCC--EEEEEE
Confidence 24799999898886543 4679999999999999 566654
No 89
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.31 E-value=5.8e-11 Score=104.26 Aligned_cols=133 Identities=17% Similarity=0.210 Sum_probs=90.6
Q ss_pred cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691 132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV 211 (309)
Q Consensus 132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv 211 (309)
..++.+|||+|||+|..+..+++. ..+|+++|.++.+++.++++....+.. .++.+...++. ...++||+
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~~---~~i~~~~~d~~-----~~~~~fD~ 130 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARR--GAKVVASDISPQMVEEARERAPEAGLA---GNITFEVGDLE-----SLLGRFDT 130 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCc---cCcEEEEcCch-----hccCCcCE
Confidence 346789999999999999998876 357999999999999999998776652 34555555432 23468999
Q ss_pred EEEcCCCCC--cccHHHHHHHHHHHHhcCCCeEEEEEeecC-----------------------CchHHHHHHHHHhCCC
Q 021691 212 IVASDCTFF--KEFHKDLARIIKFLLKKVGPSEALFFSPKR-----------------------GDSLDKFLEEIEGNHL 266 (309)
Q Consensus 212 Ii~~d~ly~--~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r-----------------------~~~~~~f~~~~~~~G~ 266 (309)
|++.+++++ .+....+++.+.++++. + .++.+.+.. ..+..++.+.++++||
T Consensus 131 v~~~~~l~~~~~~~~~~~l~~l~~~~~~-~--~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 207 (230)
T PRK07580 131 VVCLDVLIHYPQEDAARMLAHLASLTRG-S--LIFTFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGF 207 (230)
T ss_pred EEEcchhhcCCHHHHHHHHHHHHhhcCC-e--EEEEECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCC
Confidence 999998855 33455666666665532 2 233332210 0123456777888888
Q ss_pred eEEEEeccCch
Q 021691 267 HFSIIENYNAE 277 (309)
Q Consensus 267 ~~~~~~~~~~~ 277 (309)
.+..+......
T Consensus 208 ~~~~~~~~~~~ 218 (230)
T PRK07580 208 KVVRTERISSG 218 (230)
T ss_pred ceEeeeeccch
Confidence 87776655444
No 90
>PRK06922 hypothetical protein; Provisional
Probab=99.30 E-value=2e-11 Score=119.84 Aligned_cols=110 Identities=17% Similarity=0.167 Sum_probs=82.9
Q ss_pred CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691 131 DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD 210 (309)
Q Consensus 131 ~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD 210 (309)
...++.+|||+|||+|..+..+++..+..+|+++|.++.|++.++++...++. ++.+...|.........+++||
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~-----~ie~I~gDa~dLp~~fedeSFD 489 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR-----SWNVIKGDAINLSSSFEKESVD 489 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-----CeEEEEcchHhCccccCCCCEE
Confidence 34578899999999999998888888888999999999999999988765543 2333333322211113457899
Q ss_pred EEEEcCCCCC-------------cccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 211 VIVASDCTFF-------------KEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 211 vIi~~d~ly~-------------~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
+|+++.++++ ......+++.+.++||||| .+++..
T Consensus 490 vVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGG--rLII~D 537 (677)
T PRK06922 490 TIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGG--RIIIRD 537 (677)
T ss_pred EEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCc--EEEEEe
Confidence 9999877764 2456889999999999999 666654
No 91
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.30 E-value=6.5e-11 Score=102.86 Aligned_cols=126 Identities=13% Similarity=0.118 Sum_probs=87.5
Q ss_pred cCCCCeEEEeCCCCChhhHHHHHhcCC-cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC------CC
Q 021691 132 MFRSKRVIELGSGYGLAGLVIAATTEA-LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF------PY 204 (309)
Q Consensus 132 ~~~g~~VLELG~GtG~~~l~la~~~~~-~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~------~~ 204 (309)
+.+|.+|||||||+|..+..+++..+. .+|+++|+++ | +.. ..+.+...|...... ..
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~----~~v~~i~~D~~~~~~~~~i~~~~ 113 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI----VGVDFLQGDFRDELVLKALLERV 113 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC----CCcEEEecCCCChHHHHHHHHHh
Confidence 457889999999999999988887643 5999999988 1 112 235666666654320 12
Q ss_pred CCCCccEEEEcCCCCCccc-----------HHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEec
Q 021691 205 IVDTFDVIVASDCTFFKEF-----------HKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIEN 273 (309)
Q Consensus 205 ~~~~fDvIi~~d~ly~~~~-----------~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~ 273 (309)
...+||+|+++.+.+.... ...+++.+.++|+||| .+++...+...+.+|+..+++.-..++....
T Consensus 114 ~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG---~~vi~~~~~~~~~~~l~~l~~~f~~v~~~Kp 190 (209)
T PRK11188 114 GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGG---SFVVKVFQGEGFDEYLREIRSLFTKVKVRKP 190 (209)
T ss_pred CCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCC---EEEEEEecCcCHHHHHHHHHhCceEEEEECC
Confidence 3568999999665554321 2568899999999999 3444455667778888888776556665554
Q ss_pred cC
Q 021691 274 YN 275 (309)
Q Consensus 274 ~~ 275 (309)
..
T Consensus 191 ~s 192 (209)
T PRK11188 191 DS 192 (209)
T ss_pred cc
Confidence 33
No 92
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.30 E-value=4.5e-11 Score=104.29 Aligned_cols=107 Identities=17% Similarity=0.165 Sum_probs=79.1
Q ss_pred HHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691 121 VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ 199 (309)
Q Consensus 121 ~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~ 199 (309)
.+...+.+...+.++.+|||+|||+|..+..+++..+ ..+|+++|.++++++.+++|+..+++ .++++...|...
T Consensus 64 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~----~~v~~~~~d~~~ 139 (215)
T TIGR00080 64 HMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL----DNVIVIVGDGTQ 139 (215)
T ss_pred HHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC----CCeEEEECCccc
Confidence 3334454445567889999999999999999988754 35799999999999999999998876 246665555432
Q ss_pred CCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691 200 DDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 200 ~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G 239 (309)
.. ....+||+|++..+. ..+.+.+.+.|++||
T Consensus 140 ~~--~~~~~fD~Ii~~~~~------~~~~~~~~~~L~~gG 171 (215)
T TIGR00080 140 GW--EPLAPYDRIYVTAAG------PKIPEALIDQLKEGG 171 (215)
T ss_pred CC--cccCCCCEEEEcCCc------ccccHHHHHhcCcCc
Confidence 21 123589999986543 234466788999999
No 93
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.30 E-value=3.4e-11 Score=115.81 Aligned_cols=151 Identities=20% Similarity=0.139 Sum_probs=106.6
Q ss_pred HHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC
Q 021691 119 EDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN 198 (309)
Q Consensus 119 a~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~ 198 (309)
+..|.+.+.......++.+|||+|||+|.+++.+|+. +.+|+++|.++.+++.+++|+..|++. ++++...|+.
T Consensus 277 ~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~~~~----nv~~~~~d~~ 350 (431)
T TIGR00479 277 NEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELNGIA----NVEFLAGTLE 350 (431)
T ss_pred HHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHhCCC----ceEEEeCCHH
Confidence 3445555555444556789999999999999999886 569999999999999999999999873 5666666553
Q ss_pred CCC--CCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEeccCc
Q 021691 199 QDD--FPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYNA 276 (309)
Q Consensus 199 ~~~--~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~~~~ 276 (309)
... ......+||+|++ |+.+. .....+++.+.+ +++++ +++.++ .+.++..-++.+.+.|+.++.+..+|.
T Consensus 351 ~~l~~~~~~~~~~D~vi~-dPPr~-G~~~~~l~~l~~-l~~~~---ivyvsc-~p~tlard~~~l~~~gy~~~~~~~~Dm 423 (431)
T TIGR00479 351 TVLPKQPWAGQIPDVLLL-DPPRK-GCAAEVLRTIIE-LKPER---IVYVSC-NPATLARDLEFLCKEGYGITWVQPVDM 423 (431)
T ss_pred HHHHHHHhcCCCCCEEEE-CcCCC-CCCHHHHHHHHh-cCCCE---EEEEcC-CHHHHHHHHHHHHHCCeeEEEEEEecc
Confidence 211 1112356999998 55543 224556666554 55654 444443 467888888888899999998888777
Q ss_pred hhhhhh
Q 021691 277 EIWKRH 282 (309)
Q Consensus 277 ~~~~~~ 282 (309)
-+...|
T Consensus 424 FP~T~H 429 (431)
T TIGR00479 424 FPHTAH 429 (431)
T ss_pred CCCCCC
Confidence 555443
No 94
>PRK05785 hypothetical protein; Provisional
Probab=99.29 E-value=3e-11 Score=106.26 Aligned_cols=90 Identities=16% Similarity=0.193 Sum_probs=72.7
Q ss_pred CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691 134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV 213 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi 213 (309)
++.+|||+|||||..+..+++.. +.+|+++|.+++|++.++.+. . ....+. ...+..+++||+|+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~---~---------~~~~d~--~~lp~~d~sfD~v~ 115 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD---D---------KVVGSF--EALPFRDKSFDVVM 115 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc---c---------eEEech--hhCCCCCCCEEEEE
Confidence 36799999999999999988875 469999999999999987641 0 111222 23455678999999
Q ss_pred EcCCCCCcccHHHHHHHHHHHHhcC
Q 021691 214 ASDCTFFKEFHKDLARIIKFLLKKV 238 (309)
Q Consensus 214 ~~d~ly~~~~~~~ll~~l~~lLk~~ 238 (309)
++.++++..+.+.+++++.++|+|.
T Consensus 116 ~~~~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 116 SSFALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred ecChhhccCCHHHHHHHHHHHhcCc
Confidence 9999999999999999999999983
No 95
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.29 E-value=9.9e-11 Score=101.32 Aligned_cols=92 Identities=11% Similarity=0.105 Sum_probs=67.1
Q ss_pred cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691 132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV 211 (309)
Q Consensus 132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv 211 (309)
..++.+|||+|||+|..+..++...++.+|+++|+|++|++.++++.. .+.+...+... +..+++||+
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~---------~~~~~~~d~~~---~~~~~sfD~ 108 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP---------NINIIQGSLFD---PFKDNFFDL 108 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC---------CCcEEEeeccC---CCCCCCEEE
Confidence 346789999999999999998887677899999999999999987642 12233333222 345678999
Q ss_pred EEEcCCCCCcc--cHHHHHHHHHHHH
Q 021691 212 IVASDCTFFKE--FHKDLARIIKFLL 235 (309)
Q Consensus 212 Ii~~d~ly~~~--~~~~ll~~l~~lL 235 (309)
|++..+++|.. ....+++.+.+++
T Consensus 109 V~~~~vL~hl~p~~~~~~l~el~r~~ 134 (204)
T TIGR03587 109 VLTKGVLIHINPDNLPTAYRELYRCS 134 (204)
T ss_pred EEECChhhhCCHHHHHHHHHHHHhhc
Confidence 99999998753 3445555555554
No 96
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.29 E-value=6.6e-11 Score=103.09 Aligned_cols=109 Identities=17% Similarity=0.165 Sum_probs=80.2
Q ss_pred HHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCC-cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeC
Q 021691 119 EDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEA-LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHW 197 (309)
Q Consensus 119 a~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~-~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w 197 (309)
+..+..++.+...+.+|.+|||+|||+|..+..+++..+. .+|+++|.++++++.+++|+..++. .++.+...|.
T Consensus 61 ~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~----~~v~~~~gd~ 136 (212)
T PRK13942 61 AIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY----DNVEVIVGDG 136 (212)
T ss_pred cHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC----CCeEEEECCc
Confidence 3445555555556678999999999999999988887543 6999999999999999999998876 2456555543
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691 198 NQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 198 ~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G 239 (309)
... .....+||+|++..... .+...+.+.|++||
T Consensus 137 ~~~--~~~~~~fD~I~~~~~~~------~~~~~l~~~LkpgG 170 (212)
T PRK13942 137 TLG--YEENAPYDRIYVTAAGP------DIPKPLIEQLKDGG 170 (212)
T ss_pred ccC--CCcCCCcCEEEECCCcc------cchHHHHHhhCCCc
Confidence 221 12246899999864432 23456778899999
No 97
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.26 E-value=5.1e-11 Score=102.48 Aligned_cols=108 Identities=12% Similarity=0.122 Sum_probs=78.0
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI 212 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI 212 (309)
..+.+|||||||+|.+++.++.. ++.+|+++|.++.+++.+++|++.++.. ++.+..-|+.... .....+||+|
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr-~a~~V~~vE~~~~a~~~a~~Nl~~~~~~----~v~~~~~D~~~~l-~~~~~~fDlV 125 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSR-YAAGATLLEMDRAVAQQLIKNLATLKAG----NARVVNTNALSFL-AQPGTPHNVV 125 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHhCCC----cEEEEEchHHHHH-hhcCCCceEE
Confidence 46789999999999999965444 4679999999999999999999999863 4565555543211 1123469999
Q ss_pred EEcCCCCCcccHHHHHHHHHHH--HhcCCCeEEEEEeecC
Q 021691 213 VASDCTFFKEFHKDLARIIKFL--LKKVGPSEALFFSPKR 250 (309)
Q Consensus 213 i~~d~ly~~~~~~~ll~~l~~l--Lk~~G~~~~ii~~~~r 250 (309)
++ |+.|.....+.+++.+... |++++ +++..+..
T Consensus 126 ~~-DPPy~~g~~~~~l~~l~~~~~l~~~~---iv~ve~~~ 161 (199)
T PRK10909 126 FV-DPPFRKGLLEETINLLEDNGWLADEA---LIYVESEV 161 (199)
T ss_pred EE-CCCCCCChHHHHHHHHHHCCCcCCCc---EEEEEecC
Confidence 99 6667777777777777653 56666 55544443
No 98
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.25 E-value=8.8e-11 Score=110.78 Aligned_cols=136 Identities=11% Similarity=0.083 Sum_probs=97.2
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI 212 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI 212 (309)
..+++|||||||+|.+++.+|.. +.+|+++|+++.+++.+++|++.|++. ++.+...|..... .....+||+|
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~----~~~~~~~d~~~~~-~~~~~~~D~v 304 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLD----NLSFAALDSAKFA-TAQMSAPELV 304 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCC----cEEEEECCHHHHH-HhcCCCCCEE
Confidence 45789999999999999998864 579999999999999999999999873 4666555543211 1112459999
Q ss_pred EEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEeccCchhhhhhhc
Q 021691 213 VASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYNAEIWKRHQM 284 (309)
Q Consensus 213 i~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~~~~~~~~~~~~ 284 (309)
+. |+.+. .....+++.+.+ ++|++ +++.++ ++.|+.+-+..+ .||.++.+..+|.-++..|-+
T Consensus 305 i~-DPPr~-G~~~~~l~~l~~-~~p~~---ivyvsc-~p~TlaRDl~~L--~gy~l~~~~~~DmFPqT~HvE 367 (374)
T TIGR02085 305 LV-NPPRR-GIGKELCDYLSQ-MAPKF---ILYSSC-NAQTMAKDIAEL--SGYQIERVQLFDMFPHTSHYE 367 (374)
T ss_pred EE-CCCCC-CCcHHHHHHHHh-cCCCe---EEEEEe-CHHHHHHHHHHh--cCceEEEEEEeccCCCCCcEE
Confidence 99 66664 445666666654 45544 444443 556777777777 689999998888766655533
No 99
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.25 E-value=6.4e-11 Score=109.27 Aligned_cols=136 Identities=13% Similarity=0.129 Sum_probs=91.0
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI 212 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI 212 (309)
.++.+|||+|||+|.+++.+|.. +.+|+++|.++.+++.+++|++.|++. ++++...|..... .....+||+|
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~----~v~~~~~D~~~~~-~~~~~~~D~V 244 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLT----NVQFQALDSTQFA-TAQGEVPDLV 244 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCC----ceEEEEcCHHHHH-HhcCCCCeEE
Confidence 35789999999999999998885 579999999999999999999999872 4666655543211 1123469999
Q ss_pred EEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEeccCchhhhhhhc
Q 021691 213 VASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYNAEIWKRHQM 284 (309)
Q Consensus 213 i~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~~~~~~~~~~~~ 284 (309)
+...+ +. .....+++.+ ...+...+++.++ .+.++.+-++.+ .|+.++.+..+|.-++..|-+
T Consensus 245 v~dPP-r~-G~~~~~~~~l----~~~~~~~ivyvsc-~p~t~~rd~~~l--~~y~~~~~~~~DmFP~T~HvE 307 (315)
T PRK03522 245 LVNPP-RR-GIGKELCDYL----SQMAPRFILYSSC-NAQTMAKDLAHL--PGYRIERVQLFDMFPHTAHYE 307 (315)
T ss_pred EECCC-CC-CccHHHHHHH----HHcCCCeEEEEEC-CcccchhHHhhc--cCcEEEEEEEeccCCCCCeEE
Confidence 99544 32 2223333333 3333334555444 445555545555 589999888888766655543
No 100
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.24 E-value=1.8e-10 Score=110.60 Aligned_cols=147 Identities=14% Similarity=0.078 Sum_probs=96.0
Q ss_pred CceeecccHHH-HHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCc
Q 021691 111 GLVCHWPSEDV-LAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTT 189 (309)
Q Consensus 111 G~~~~W~sa~~-La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~ 189 (309)
|...+-+.+-. .+..+ ...+|.+|||+|||+|..++.+++..++.+|+++|.++.+++.+++|++.++..
T Consensus 224 G~~~iQd~~s~~~~~~l----~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~----- 294 (427)
T PRK10901 224 GWVSVQDAAAQLAATLL----APQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK----- 294 (427)
T ss_pred ceEEEECHHHHHHHHHc----CCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----
Confidence 44434444433 33333 345789999999999999999988766579999999999999999999998762
Q ss_pred eEEEEeeCCCCCCCCCCCCccEEEEcCCCCCc---------------c-------cHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 190 VKSMTLHWNQDDFPYIVDTFDVIVASDCTFFK---------------E-------FHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 190 v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~---------------~-------~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
+.+...|...........+||.|++..+.... . ....++..+.++|+||| .+++++
T Consensus 295 ~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG--~lvyst 372 (427)
T PRK10901 295 ATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGG--TLLYAT 372 (427)
T ss_pred eEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCC--EEEEEe
Confidence 34444443321111124679999984432211 1 12468899999999999 555554
Q ss_pred e--cCCchHHHHHHHHHhC-CCeE
Q 021691 248 P--KRGDSLDKFLEEIEGN-HLHF 268 (309)
Q Consensus 248 ~--~r~~~~~~f~~~~~~~-G~~~ 268 (309)
+ .+.+..+.....++++ ++.+
T Consensus 373 cs~~~~Ene~~v~~~l~~~~~~~~ 396 (427)
T PRK10901 373 CSILPEENEQQIKAFLARHPDAEL 396 (427)
T ss_pred CCCChhhCHHHHHHHHHhCCCCEE
Confidence 3 2344444455555554 4543
No 101
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.24 E-value=5.7e-11 Score=100.29 Aligned_cols=126 Identities=15% Similarity=0.211 Sum_probs=86.4
Q ss_pred CCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEE
Q 021691 135 SKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVA 214 (309)
Q Consensus 135 g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~ 214 (309)
-.++||+|||.|.++..||.+ +.+++++|+++.+++.+++++... .+|.+...+.... .+.++||+|+.
T Consensus 44 y~~alEvGCs~G~lT~~LA~r--Cd~LlavDis~~Al~~Ar~Rl~~~------~~V~~~~~dvp~~---~P~~~FDLIV~ 112 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPR--CDRLLAVDISPRALARARERLAGL------PHVEWIQADVPEF---WPEGRFDLIVL 112 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGG--EEEEEEEES-HHHHHHHHHHTTT-------SSEEEEES-TTT------SS-EEEEEE
T ss_pred cceeEecCCCccHHHHHHHHh--hCceEEEeCCHHHHHHHHHhcCCC------CCeEEEECcCCCC---CCCCCeeEEEE
Confidence 358999999999999999988 468999999999999999886532 3567776655332 35689999999
Q ss_pred cCCCCCccc---HHHHHHHHHHHHhcCCCeEEEEEeecC--------CchHHHHHHHHHhCCCeEEEEec
Q 021691 215 SDCTFFKEF---HKDLARIIKFLLKKVGPSEALFFSPKR--------GDSLDKFLEEIEGNHLHFSIIEN 273 (309)
Q Consensus 215 ~d~ly~~~~---~~~ll~~l~~lLk~~G~~~~ii~~~~r--------~~~~~~f~~~~~~~G~~~~~~~~ 273 (309)
+.++|+..+ ...++..+...|+||| .+++.+.+. ....+...+++.+.-..++.++.
T Consensus 113 SEVlYYL~~~~~L~~~l~~l~~~L~pgG--~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~ 180 (201)
T PF05401_consen 113 SEVLYYLDDAEDLRAALDRLVAALAPGG--HLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVEC 180 (201)
T ss_dssp ES-GGGSSSHHHHHHHHHHHHHTEEEEE--EEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEE
T ss_pred ehHhHcCCCHHHHHHHHHHHHHHhCCCC--EEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEE
Confidence 999999754 5668888889999999 566655321 12234556666666556666554
No 102
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.23 E-value=1.2e-10 Score=113.28 Aligned_cols=129 Identities=20% Similarity=0.141 Sum_probs=91.6
Q ss_pred CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691 131 DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD 210 (309)
Q Consensus 131 ~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD 210 (309)
...++++|||+|||+|..+..+++. ..+|+++|.++.|++.++. .++. ..++.+...+......+...++||
T Consensus 34 ~~~~~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~---~~~~---~~~i~~~~~d~~~~~~~~~~~~fD 105 (475)
T PLN02336 34 PPYEGKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNES---INGH---YKNVKFMCADVTSPDLNISDGSVD 105 (475)
T ss_pred CccCCCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHH---Hhcc---CCceEEEEecccccccCCCCCCEE
Confidence 3446789999999999999999886 4699999999999987654 2222 134566666654333444567899
Q ss_pred EEEEcCCCCCccc--HHHHHHHHHHHHhcCCCeEEEEEeec-----------CC---chHHHHHHHHHhCCCeEE
Q 021691 211 VIVASDCTFFKEF--HKDLARIIKFLLKKVGPSEALFFSPK-----------RG---DSLDKFLEEIEGNHLHFS 269 (309)
Q Consensus 211 vIi~~d~ly~~~~--~~~ll~~l~~lLk~~G~~~~ii~~~~-----------r~---~~~~~f~~~~~~~G~~~~ 269 (309)
+|++..++++..+ ...+++.+.++|+|+| .+++.... .+ .....+.+.+.++|+...
T Consensus 106 ~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG--~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 178 (475)
T PLN02336 106 LIFSNWLLMYLSDKEVENLAERMVKWLKVGG--YIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDE 178 (475)
T ss_pred EEehhhhHHhCCHHHHHHHHHHHHHhcCCCe--EEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccC
Confidence 9999998887654 6789999999999999 44443210 11 124556667778776543
No 103
>PLN02672 methionine S-methyltransferase
Probab=99.23 E-value=3.3e-10 Score=117.72 Aligned_cols=150 Identities=18% Similarity=0.030 Sum_probs=102.9
Q ss_pred cccHHHHHHHHhhCc-CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCC---------
Q 021691 116 WPSEDVLAFFSLSHA-DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAF--------- 185 (309)
Q Consensus 116 W~sa~~La~~l~~~~-~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~--------- 185 (309)
-|-++.|.+.+...+ ..+++++|||||||+|.+++.+++.++..+|+++|+|+++++.+++|+..|++..
T Consensus 99 RpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~ 178 (1082)
T PLN02672 99 EDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGE 178 (1082)
T ss_pred chhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccc
Confidence 455667777754433 2346789999999999999999998877899999999999999999999986530
Q ss_pred ---CCCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCcc--------------------------------------cH
Q 021691 186 ---GGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKE--------------------------------------FH 224 (309)
Q Consensus 186 ---~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~--------------------------------------~~ 224 (309)
...++.+..-||.... .....+||+||++.+.-... .+
T Consensus 179 ~~~l~~rV~f~~sDl~~~~-~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~y 257 (1082)
T PLN02672 179 GKTLLDRVEFYESDLLGYC-RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLI 257 (1082)
T ss_pred cccccccEEEEECchhhhc-cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHH
Confidence 1135777777775432 11123699999976531100 12
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHH-HHHHhCCCeEEE
Q 021691 225 KDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFL-EEIEGNHLHFSI 270 (309)
Q Consensus 225 ~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~-~~~~~~G~~~~~ 270 (309)
..++....++|+++| .+++..... .-+... +.+++.||....
T Consensus 258 r~i~~~a~~~L~pgG---~l~lEiG~~-q~~~v~~~l~~~~gf~~~~ 300 (1082)
T PLN02672 258 ARAVEEGISVIKPMG---IMIFNMGGR-PGQAVCERLFERRGFRITK 300 (1082)
T ss_pred HHHHHHHHHhccCCC---EEEEEECcc-HHHHHHHHHHHHCCCCeeE
Confidence 557778888999999 444443332 223455 477778887643
No 104
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=2.1e-10 Score=100.12 Aligned_cols=130 Identities=14% Similarity=0.109 Sum_probs=99.9
Q ss_pred HHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCC-cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC
Q 021691 125 FSLSHADMFRSKRVIELGSGYGLAGLVIAATTEA-LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP 203 (309)
Q Consensus 125 ~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~-~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~ 203 (309)
|+.....+.+|.+|||.|.|+|.++.++|...+. ++|+..|+.++..+.|++|++..++. .++....-|..+..
T Consensus 85 ~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~---d~v~~~~~Dv~~~~-- 159 (256)
T COG2519 85 YIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG---DRVTLKLGDVREGI-- 159 (256)
T ss_pred HHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc---cceEEEeccccccc--
Confidence 3444567889999999999999999999975544 89999999999999999999998774 23555444333222
Q ss_pred CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeE
Q 021691 204 YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHF 268 (309)
Q Consensus 204 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~ 268 (309)
....||.|+. +..++...+..+.++|+||| .++++.|.- +..++..+.+++.||..
T Consensus 160 -~~~~vDav~L-----Dmp~PW~~le~~~~~Lkpgg--~~~~y~P~v-eQv~kt~~~l~~~g~~~ 215 (256)
T COG2519 160 -DEEDVDAVFL-----DLPDPWNVLEHVSDALKPGG--VVVVYSPTV-EQVEKTVEALRERGFVD 215 (256)
T ss_pred -cccccCEEEE-----cCCChHHHHHHHHHHhCCCc--EEEEEcCCH-HHHHHHHHHHHhcCccc
Confidence 2348999998 35678899999999999999 677776654 34466777888888764
No 105
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.22 E-value=2.2e-10 Score=107.14 Aligned_cols=108 Identities=12% Similarity=0.026 Sum_probs=84.2
Q ss_pred CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691 134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV 213 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi 213 (309)
.+..+||||||+|...+.+|+..+...++|+|+++.+++.+.+++..+++ .++.+...|.........++++|.|+
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL----~NV~~i~~DA~~ll~~~~~~s~D~I~ 197 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL----KNLLIINYDARLLLELLPSNSVEKIF 197 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC----CcEEEEECCHHHhhhhCCCCceeEEE
Confidence 46799999999999999999998888999999999999999999998887 35776666543222234467899999
Q ss_pred EcCCCCCccc------HHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 214 ASDCTFFKEF------HKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 214 ~~d~ly~~~~------~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
++-+.-+... .+.+++.+.++|++|| .+.+.+
T Consensus 198 lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG--~l~l~T 235 (390)
T PRK14121 198 VHFPVPWDKKPHRRVISEDFLNEALRVLKPGG--TLELRT 235 (390)
T ss_pred EeCCCCccccchhhccHHHHHHHHHHHcCCCc--EEEEEE
Confidence 8654433222 2689999999999999 444444
No 106
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.19 E-value=1.7e-10 Score=97.91 Aligned_cols=97 Identities=16% Similarity=0.152 Sum_probs=78.5
Q ss_pred CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691 131 DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD 210 (309)
Q Consensus 131 ~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD 210 (309)
.+-+-.+|.|||||+|..+-.++.++|.+.++|+|.|++|++.++.... ++++...|... -.+...+|
T Consensus 27 p~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp---------~~~f~~aDl~~---w~p~~~~d 94 (257)
T COG4106 27 PLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP---------DATFEEADLRT---WKPEQPTD 94 (257)
T ss_pred CccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC---------CCceecccHhh---cCCCCccc
Confidence 3445679999999999999999999999999999999999999976532 22222222111 12346799
Q ss_pred EEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691 211 VIVASDCTFFKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 211 vIi~~d~ly~~~~~~~ll~~l~~lLk~~G 239 (309)
+++++-++++..++..++..+...|.|||
T Consensus 95 llfaNAvlqWlpdH~~ll~rL~~~L~Pgg 123 (257)
T COG4106 95 LLFANAVLQWLPDHPELLPRLVSQLAPGG 123 (257)
T ss_pred hhhhhhhhhhccccHHHHHHHHHhhCCCc
Confidence 99999999999999999999999999999
No 107
>PTZ00146 fibrillarin; Provisional
Probab=99.18 E-value=1.5e-09 Score=97.88 Aligned_cols=150 Identities=13% Similarity=0.106 Sum_probs=95.5
Q ss_pred ceeecccHH-HHHHHHhh---CcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCC
Q 021691 112 LVCHWPSED-VLAFFSLS---HADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFG 186 (309)
Q Consensus 112 ~~~~W~sa~-~La~~l~~---~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~ 186 (309)
++ +|+.-. .||.-++. ...+.++.+|||||||+|..+..+|...+ ..+|+++|.++.+++.+...+...
T Consensus 107 yR-~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r----- 180 (293)
T PTZ00146 107 YR-VWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR----- 180 (293)
T ss_pred ee-eeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-----
Confidence 66 998643 36655543 23456889999999999999999998875 358999999998776665543321
Q ss_pred CCceEEEEeeCCCCC-CCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC-----CchHHHH---
Q 021691 187 GTTVKSMTLHWNQDD-FPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR-----GDSLDKF--- 257 (309)
Q Consensus 187 ~~~v~~~~l~w~~~~-~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r-----~~~~~~f--- 257 (309)
.++....-|..... .......||+|++ |+. .+.....++..++++||++| .+++.-..+ +...+.|
T Consensus 181 -~NI~~I~~Da~~p~~y~~~~~~vDvV~~-Dva-~pdq~~il~~na~r~LKpGG--~~vI~ika~~id~g~~pe~~f~~e 255 (293)
T PTZ00146 181 -PNIVPIIEDARYPQKYRMLVPMVDVIFA-DVA-QPDQARIVALNAQYFLKNGG--HFIISIKANCIDSTAKPEVVFASE 255 (293)
T ss_pred -CCCEEEECCccChhhhhcccCCCCEEEE-eCC-CcchHHHHHHHHHHhccCCC--EEEEEEeccccccCCCHHHHHHHH
Confidence 13344333332211 1123357999999 443 35555567778999999999 455532211 1111222
Q ss_pred HHHHHhCCCeEEEEe
Q 021691 258 LEEIEGNHLHFSIIE 272 (309)
Q Consensus 258 ~~~~~~~G~~~~~~~ 272 (309)
.+.+++.||+.....
T Consensus 256 v~~L~~~GF~~~e~v 270 (293)
T PTZ00146 256 VQKLKKEGLKPKEQL 270 (293)
T ss_pred HHHHHHcCCceEEEE
Confidence 466888999865433
No 108
>PRK06202 hypothetical protein; Provisional
Probab=99.18 E-value=3.7e-10 Score=99.62 Aligned_cols=106 Identities=18% Similarity=0.137 Sum_probs=74.7
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhc----CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCC
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATT----EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDT 208 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~----~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~ 208 (309)
.++.+|||||||+|.++..+++.. +..+|+++|.+++|++.++++...++. .+...+-+ ..+..+++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~-------~~~~~~~~--~l~~~~~~ 129 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV-------TFRQAVSD--ELVAEGER 129 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCC-------eEEEEecc--cccccCCC
Confidence 456799999999999988887642 235899999999999999887654433 22222211 11223568
Q ss_pred ccEEEEcCCCCCccc--HHHHHHHHHHHHhcCCCeEEEEEeecCC
Q 021691 209 FDVIVASDCTFFKEF--HKDLARIIKFLLKKVGPSEALFFSPKRG 251 (309)
Q Consensus 209 fDvIi~~d~ly~~~~--~~~ll~~l~~lLk~~G~~~~ii~~~~r~ 251 (309)
||+|+++.++++..+ ...+++.+.++++ | .+++....++
T Consensus 130 fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~--~~~i~dl~~~ 170 (232)
T PRK06202 130 FDVVTSNHFLHHLDDAEVVRLLADSAALAR--R--LVLHNDLIRS 170 (232)
T ss_pred ccEEEECCeeecCChHHHHHHHHHHHHhcC--e--eEEEeccccC
Confidence 999999999998665 4568888888886 3 3555554443
No 109
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.17 E-value=8e-11 Score=106.99 Aligned_cols=107 Identities=20% Similarity=0.358 Sum_probs=83.1
Q ss_pred HhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCC
Q 021691 126 SLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYI 205 (309)
Q Consensus 126 l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~ 205 (309)
+.++.+++++|.|||+|||||.+++.+|+. |+.+|+++|.+ ++.+.+++.+..|++. ..+++......+-..|
T Consensus 52 i~~n~~lf~dK~VlDVGcGtGILS~F~akA-GA~~V~aVe~S-~ia~~a~~iv~~N~~~---~ii~vi~gkvEdi~LP-- 124 (346)
T KOG1499|consen 52 ILQNKHLFKDKTVLDVGCGTGILSMFAAKA-GARKVYAVEAS-SIADFARKIVKDNGLE---DVITVIKGKVEDIELP-- 124 (346)
T ss_pred HhcchhhcCCCEEEEcCCCccHHHHHHHHh-CcceEEEEech-HHHHHHHHHHHhcCcc---ceEEEeecceEEEecC--
Confidence 456778999999999999999999998775 78999999955 5669999999999985 3455555444333333
Q ss_pred CCCccEEEEcC---CCCCcccHHHHHHHHHHHHhcCC
Q 021691 206 VDTFDVIVASD---CTFFKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 206 ~~~fDvIi~~d---~ly~~~~~~~ll~~l~~lLk~~G 239 (309)
.++.|+|++-- ++++...+...+-.-.+.|++||
T Consensus 125 ~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G 161 (346)
T KOG1499|consen 125 VEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGG 161 (346)
T ss_pred ccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCc
Confidence 57899999843 55556667777777789999999
No 110
>PHA03411 putative methyltransferase; Provisional
Probab=99.16 E-value=4.7e-10 Score=100.04 Aligned_cols=124 Identities=14% Similarity=0.119 Sum_probs=85.1
Q ss_pred CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691 134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV 213 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi 213 (309)
.+.+|||+|||+|.+++.+++..++.+|+++|+++.|++.+++|.. ++.+...|.... ....+||+|+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~---------~v~~v~~D~~e~---~~~~kFDlII 131 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP---------EAEWITSDVFEF---ESNEKFDVVI 131 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc---------CCEEEECchhhh---cccCCCcEEE
Confidence 3568999999999999988887656799999999999999988632 122222222111 1235799999
Q ss_pred EcCCCCCccc--------------------HHHHHHHHHHHHhcCCCeEEEEEe-ec--CCchHHHHHHHHHhCCCeEE
Q 021691 214 ASDCTFFKEF--------------------HKDLARIIKFLLKKVGPSEALFFS-PK--RGDSLDKFLEEIEGNHLHFS 269 (309)
Q Consensus 214 ~~d~ly~~~~--------------------~~~ll~~l~~lLk~~G~~~~ii~~-~~--r~~~~~~f~~~~~~~G~~~~ 269 (309)
+++++++... +..++.....+|+|+|...+++.+ +. ..-..+++.+.+++.||...
T Consensus 132 sNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~~~ 210 (279)
T PHA03411 132 SNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVTY 210 (279)
T ss_pred EcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcEec
Confidence 9888776211 356667778888999833323222 11 23345788999999999764
No 111
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.16 E-value=1.2e-09 Score=100.21 Aligned_cols=86 Identities=17% Similarity=0.139 Sum_probs=62.6
Q ss_pred CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhc-cCCCCCCceEEEEe-eCCC--CCCCCCCCCc
Q 021691 134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDAN-SGAFGGTTVKSMTL-HWNQ--DDFPYIVDTF 209 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n-~~~~~~~~v~~~~l-~w~~--~~~~~~~~~f 209 (309)
.+.+|||||||+|.+...++....+.+++++|+++.+++.+++|++.| ++. .++.+... +-.. .......+.|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~---~~I~~~~~~~~~~i~~~i~~~~~~f 190 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLN---GAIRLRLQKDSKAIFKGIIHKNERF 190 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCc---CcEEEEEccchhhhhhcccccCCce
Confidence 457999999999977777777666789999999999999999999999 673 34544321 1110 0111234689
Q ss_pred cEEEEcCCCCCcc
Q 021691 210 DVIVASDCTFFKE 222 (309)
Q Consensus 210 DvIi~~d~ly~~~ 222 (309)
|+|+|+.++|...
T Consensus 191 DlivcNPPf~~s~ 203 (321)
T PRK11727 191 DATLCNPPFHASA 203 (321)
T ss_pred EEEEeCCCCcCcc
Confidence 9999988877643
No 112
>PLN03075 nicotianamine synthase; Provisional
Probab=99.16 E-value=5.9e-10 Score=100.78 Aligned_cols=107 Identities=17% Similarity=0.078 Sum_probs=80.9
Q ss_pred CCCeEEEeCCCCC-hhhHHHH-HhcCCcEEEEEcCCHHHHHHHHHHHHh-ccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691 134 RSKRVIELGSGYG-LAGLVIA-ATTEALEVVISDGNPQVVDYIQRNVDA-NSGAFGGTTVKSMTLHWNQDDFPYIVDTFD 210 (309)
Q Consensus 134 ~g~~VLELG~GtG-~~~l~la-~~~~~~~V~~tD~~~~~l~~~~~n~~~-n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD 210 (309)
++++|+|+|||.| +.++.++ ...+..+++++|.++++++.+++++.. .++ ..++++...|..+.. ...+.||
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL---~~rV~F~~~Da~~~~--~~l~~FD 197 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL---SKRMFFHTADVMDVT--ESLKEYD 197 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc---cCCcEEEECchhhcc--cccCCcC
Confidence 7799999999965 5555555 456778999999999999999999965 555 346777777654321 1236799
Q ss_pred EEEEcCCCCC-cccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 211 VIVASDCTFF-KEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 211 vIi~~d~ly~-~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
+|+++-.+|+ .+....+++.+.+.|+||| .+++-.
T Consensus 198 lVF~~ALi~~dk~~k~~vL~~l~~~LkPGG--~Lvlr~ 233 (296)
T PLN03075 198 VVFLAALVGMDKEEKVKVIEHLGKHMAPGA--LLMLRS 233 (296)
T ss_pred EEEEecccccccccHHHHHHHHHHhcCCCc--EEEEec
Confidence 9999844454 4889999999999999999 444433
No 113
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.16 E-value=7.4e-10 Score=96.35 Aligned_cols=104 Identities=17% Similarity=0.132 Sum_probs=76.0
Q ss_pred HHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC
Q 021691 122 LAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD 201 (309)
Q Consensus 122 La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~ 201 (309)
+..++.......++.+|||+|||+|..+..+++.. .+|+++|.++++++.+++++..+++. ++.+...+....
T Consensus 66 ~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~----~v~~~~~d~~~~- 138 (212)
T PRK00312 66 MVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLH----NVSVRHGDGWKG- 138 (212)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCC----ceEEEECCcccC-
Confidence 33344444556678999999999999998887763 48999999999999999999988763 355555543221
Q ss_pred CCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691 202 FPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 202 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G 239 (309)
....++||+|++..+. ..+.+.+.+.|++||
T Consensus 139 -~~~~~~fD~I~~~~~~------~~~~~~l~~~L~~gG 169 (212)
T PRK00312 139 -WPAYAPFDRILVTAAA------PEIPRALLEQLKEGG 169 (212)
T ss_pred -CCcCCCcCEEEEccCc------hhhhHHHHHhcCCCc
Confidence 1123689999996543 233567789999999
No 114
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.16 E-value=2e-10 Score=101.45 Aligned_cols=111 Identities=14% Similarity=0.048 Sum_probs=82.5
Q ss_pred HHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC
Q 021691 123 AFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD 201 (309)
Q Consensus 123 a~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~ 201 (309)
++++.......++++|||+|||+|..++.+|+..+ +++|+++|.++++++.+++|++.+++. .++++...+..+..
T Consensus 57 g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~---~~i~~~~gda~~~L 133 (234)
T PLN02781 57 GLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD---HKINFIQSDALSAL 133 (234)
T ss_pred HHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEEccHHHHH
Confidence 33333333445688999999999999888887654 579999999999999999999999884 45666655543221
Q ss_pred C---C-CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691 202 F---P-YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 202 ~---~-~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G 239 (309)
. . ...++||+|+. |.- ...+..++..+.++|++||
T Consensus 134 ~~l~~~~~~~~fD~Vfi-Da~--k~~y~~~~~~~~~ll~~GG 172 (234)
T PLN02781 134 DQLLNNDPKPEFDFAFV-DAD--KPNYVHFHEQLLKLVKVGG 172 (234)
T ss_pred HHHHhCCCCCCCCEEEE-CCC--HHHHHHHHHHHHHhcCCCe
Confidence 0 0 11368999998 432 4567788999999999999
No 115
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.15 E-value=7.8e-10 Score=106.19 Aligned_cols=123 Identities=13% Similarity=0.020 Sum_probs=84.5
Q ss_pred ccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEee
Q 021691 117 PSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLH 196 (309)
Q Consensus 117 ~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~ 196 (309)
.++..++..+ ...+|.+|||+|||+|..++.++...+.++|+++|.++.+++.+++|++.+++. ..+.....+
T Consensus 225 ~~s~~~~~~L----~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~---~~v~~~~~d 297 (426)
T TIGR00563 225 ASAQWVATWL----APQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT---IKAETKDGD 297 (426)
T ss_pred HHHHHHHHHh----CCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC---eEEEEeccc
Confidence 3455555544 345788999999999999999998877679999999999999999999998873 122223332
Q ss_pred CCCCCCCCCCCCccEEEEcCC------CCCccc----------------HHHHHHHHHHHHhcCCCeEEEEEee
Q 021691 197 WNQDDFPYIVDTFDVIVASDC------TFFKEF----------------HKDLARIIKFLLKKVGPSEALFFSP 248 (309)
Q Consensus 197 w~~~~~~~~~~~fDvIi~~d~------ly~~~~----------------~~~ll~~l~~lLk~~G~~~~ii~~~ 248 (309)
...........+||.|++..+ +...++ ...++..+.++|+||| .++++++
T Consensus 298 ~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG--~lvystc 369 (426)
T TIGR00563 298 GRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGG--TLVYATC 369 (426)
T ss_pred cccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCc--EEEEEeC
Confidence 211111113467999997221 111111 3578899999999999 5666554
No 116
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.14 E-value=4.3e-10 Score=96.15 Aligned_cols=110 Identities=12% Similarity=0.099 Sum_probs=76.6
Q ss_pred cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCC-CCC-Cc
Q 021691 132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPY-IVD-TF 209 (309)
Q Consensus 132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~-~~~-~f 209 (309)
...|++||||+||+|.+|+.++.+ ++.+|+++|.++.+++.+++|++.|+.. .++.+...|........ ... .|
T Consensus 47 ~~~g~~vLDLfaGsG~lglea~sr-ga~~v~~vE~~~~a~~~~~~N~~~~~~~---~~~~~~~~D~~~~l~~~~~~~~~~ 122 (189)
T TIGR00095 47 EIQGAHLLDVFAGSGLLGEEALSR-GAKVAFLEEDDRKANQTLKENLALLKSG---EQAEVVRNSALRALKFLAKKPTFD 122 (189)
T ss_pred hcCCCEEEEecCCCcHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHhCCc---ccEEEEehhHHHHHHHhhccCCCc
Confidence 357899999999999999997775 6679999999999999999999999873 23444444331110001 112 35
Q ss_pred cEEEEcCCCCCcccHHHHHHHHHH--HHhcCCCeEEEEEeec
Q 021691 210 DVIVASDCTFFKEFHKDLARIIKF--LLKKVGPSEALFFSPK 249 (309)
Q Consensus 210 DvIi~~d~ly~~~~~~~ll~~l~~--lLk~~G~~~~ii~~~~ 249 (309)
|+|+. |+.|.....+.++..+.. +|+++| +++....
T Consensus 123 dvv~~-DPPy~~~~~~~~l~~l~~~~~l~~~~---iiv~E~~ 160 (189)
T TIGR00095 123 NVIYL-DPPFFNGALQALLELCENNWILEDTV---LIVVEED 160 (189)
T ss_pred eEEEE-CcCCCCCcHHHHHHHHHHCCCCCCCe---EEEEEec
Confidence 66655 999987777777776644 566666 4554433
No 117
>PRK04457 spermidine synthase; Provisional
Probab=99.14 E-value=3.7e-10 Score=101.44 Aligned_cols=124 Identities=17% Similarity=0.179 Sum_probs=86.5
Q ss_pred CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691 134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV 213 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi 213 (309)
++++|||||||+|.++..+++..+..+|+++|+++++++.+++++..++. ..++++...|..+. ......+||+|+
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~---~~rv~v~~~Da~~~-l~~~~~~yD~I~ 141 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPEN---GERFEVIEADGAEY-IAVHRHSTDVIL 141 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCC---CCceEEEECCHHHH-HHhCCCCCCEEE
Confidence 46899999999999999998888888999999999999999998765432 23555554443211 112235899999
Q ss_pred EcCCCCCcc-----cHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhC
Q 021691 214 ASDCTFFKE-----FHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGN 264 (309)
Q Consensus 214 ~~d~ly~~~-----~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~ 264 (309)
+ |.+.... ....+++.++++|+|+| .+++-...+......+.+.+++.
T Consensus 142 ~-D~~~~~~~~~~l~t~efl~~~~~~L~pgG--vlvin~~~~~~~~~~~l~~l~~~ 194 (262)
T PRK04457 142 V-DGFDGEGIIDALCTQPFFDDCRNALSSDG--IFVVNLWSRDKRYDRYLERLESS 194 (262)
T ss_pred E-eCCCCCCCccccCcHHHHHHHHHhcCCCc--EEEEEcCCCchhHHHHHHHHHHh
Confidence 8 4432211 13689999999999999 44443333444455666666554
No 118
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.14 E-value=4.7e-10 Score=105.35 Aligned_cols=148 Identities=16% Similarity=0.160 Sum_probs=99.9
Q ss_pred HHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC
Q 021691 119 EDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN 198 (309)
Q Consensus 119 a~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~ 198 (309)
+..|.+++...... .+.+||||+||+|.+++.+++. +.+|+++|.++.+++.+++|+..|++. ++.+...|..
T Consensus 192 ~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~~~~~~----~v~~~~~d~~ 264 (362)
T PRK05031 192 NEKMLEWALDATKG-SKGDLLELYCGNGNFTLALARN--FRRVLATEISKPSVAAAQYNIAANGID----NVQIIRMSAE 264 (362)
T ss_pred HHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHHhCCC----cEEEEECCHH
Confidence 55566666554322 2357999999999999988876 569999999999999999999999873 4566555443
Q ss_pred CCC--CCC------------CCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhC
Q 021691 199 QDD--FPY------------IVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGN 264 (309)
Q Consensus 199 ~~~--~~~------------~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~ 264 (309)
... ... ...+||+|+. |+.+ ....+.+++.+.+ +.+ +++.++.. .++.+-+..+.+
T Consensus 265 ~~l~~~~~~~~~~~~~~~~~~~~~~D~v~l-DPPR-~G~~~~~l~~l~~---~~~---ivyvSC~p-~tlarDl~~L~~- 334 (362)
T PRK05031 265 EFTQAMNGVREFNRLKGIDLKSYNFSTIFV-DPPR-AGLDDETLKLVQA---YER---ILYISCNP-ETLCENLETLSQ- 334 (362)
T ss_pred HHHHHHhhcccccccccccccCCCCCEEEE-CCCC-CCCcHHHHHHHHc---cCC---EEEEEeCH-HHHHHHHHHHcC-
Confidence 210 000 0125899999 7776 3445555555544 443 45544433 666665566654
Q ss_pred CCeEEEEeccCchhhhhhh
Q 021691 265 HLHFSIIENYNAEIWKRHQ 283 (309)
Q Consensus 265 G~~~~~~~~~~~~~~~~~~ 283 (309)
||.++.+..+|.-+...|-
T Consensus 335 gY~l~~v~~~DmFPqT~Hv 353 (362)
T PRK05031 335 THKVERFALFDQFPYTHHM 353 (362)
T ss_pred CcEEEEEEEcccCCCCCcE
Confidence 9999998888876555553
No 119
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.14 E-value=1.2e-09 Score=93.78 Aligned_cols=123 Identities=11% Similarity=0.028 Sum_probs=85.9
Q ss_pred CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691 134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV 213 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi 213 (309)
++++|||+|||+|..+..++... ...++++|.++++++.++.+ +. .+...+......+..+++||+|+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~----~~-------~~~~~d~~~~l~~~~~~sfD~Vi 80 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR----GV-------NVIQGDLDEGLEAFPDKSFDYVI 80 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc----CC-------eEEEEEhhhcccccCCCCcCEEE
Confidence 56799999999999988877653 45789999999999887642 22 33333332211123456899999
Q ss_pred EcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee--------------------------------cCCchHHHHHHHH
Q 021691 214 ASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP--------------------------------KRGDSLDKFLEEI 261 (309)
Q Consensus 214 ~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~--------------------------------~r~~~~~~f~~~~ 261 (309)
++.++++..+...+++.+.+.++++ ++..+ .+..+.+++.+.+
T Consensus 81 ~~~~l~~~~d~~~~l~e~~r~~~~~-----ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll 155 (194)
T TIGR02081 81 LSQTLQATRNPEEILDEMLRVGRHA-----IVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLC 155 (194)
T ss_pred EhhHhHcCcCHHHHHHHHHHhCCeE-----EEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHH
Confidence 9999999888888888887765432 11100 0123567788899
Q ss_pred HhCCCeEEEEec
Q 021691 262 EGNHLHFSIIEN 273 (309)
Q Consensus 262 ~~~G~~~~~~~~ 273 (309)
+++||++.....
T Consensus 156 ~~~Gf~v~~~~~ 167 (194)
T TIGR02081 156 GELNLRILDRAA 167 (194)
T ss_pred HHCCCEEEEEEE
Confidence 999999876554
No 120
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.14 E-value=6.7e-10 Score=93.61 Aligned_cols=123 Identities=11% Similarity=0.051 Sum_probs=91.3
Q ss_pred CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691 134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV 213 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi 213 (309)
+|.+|||||||.|.+-..|... .+.+..++|++++.+..+.+ +|+ .+.+.|.+......++++||+||
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~----rGv-------~Viq~Dld~gL~~f~d~sFD~VI 80 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVA----RGV-------SVIQGDLDEGLADFPDQSFDYVI 80 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHH----cCC-------CEEECCHHHhHhhCCCCCccEEe
Confidence 6889999999999887776654 46789999999987665543 344 56777777666567789999999
Q ss_pred EcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee--------------------------------cCCchHHHHHHHH
Q 021691 214 ASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP--------------------------------KRGDSLDKFLEEI 261 (309)
Q Consensus 214 ~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~--------------------------------~r~~~~~~f~~~~ 261 (309)
++.++.....+..+++++.|+ +. .+++.-| .+.-|...|.+.|
T Consensus 81 lsqtLQ~~~~P~~vL~EmlRV---gr--~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc 155 (193)
T PF07021_consen 81 LSQTLQAVRRPDEVLEEMLRV---GR--RAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLC 155 (193)
T ss_pred hHhHHHhHhHHHHHHHHHHHh---cC--eEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHH
Confidence 999999988888887777655 33 2333221 0123788999999
Q ss_pred HhCCCeEEEEec
Q 021691 262 EGNHLHFSIIEN 273 (309)
Q Consensus 262 ~~~G~~~~~~~~ 273 (309)
++.|+.+..-..
T Consensus 156 ~~~~i~I~~~~~ 167 (193)
T PF07021_consen 156 RELGIRIEERVF 167 (193)
T ss_pred HHCCCEEEEEEE
Confidence 999999866443
No 121
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.13 E-value=2e-09 Score=91.93 Aligned_cols=126 Identities=17% Similarity=0.183 Sum_probs=82.1
Q ss_pred HHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhc-CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691 121 VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATT-EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ 199 (309)
Q Consensus 121 ~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~-~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~ 199 (309)
.+.+.......+.+|.+|||+|||+|.++..+++.. +..+|+++|+++.+ .. ..+.+...+..+
T Consensus 19 ~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~----~~i~~~~~d~~~ 83 (188)
T TIGR00438 19 KLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI----ENVDFIRGDFTD 83 (188)
T ss_pred HHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC----CCceEEEeeCCC
Confidence 344444445566789999999999999998888775 45689999999854 11 123444455443
Q ss_pred CCC------CCCCCCccEEEEcCCCCC-----c------ccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHH
Q 021691 200 DDF------PYIVDTFDVIVASDCTFF-----K------EFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIE 262 (309)
Q Consensus 200 ~~~------~~~~~~fDvIi~~d~ly~-----~------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~ 262 (309)
... ....++||+|++..+.+. . ...+.+++.+.++|+|+| .+++.. .....+.+++..++
T Consensus 84 ~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG--~lvi~~-~~~~~~~~~l~~l~ 160 (188)
T TIGR00438 84 EEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKG--NFVVKV-FQGEEIDEYLNELR 160 (188)
T ss_pred hhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCC--EEEEEE-ccCccHHHHHHHHH
Confidence 210 123457999998543221 1 123678999999999999 444433 44555667777776
Q ss_pred hC
Q 021691 263 GN 264 (309)
Q Consensus 263 ~~ 264 (309)
+.
T Consensus 161 ~~ 162 (188)
T TIGR00438 161 KL 162 (188)
T ss_pred hh
Confidence 65
No 122
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.13 E-value=3.7e-10 Score=97.82 Aligned_cols=107 Identities=14% Similarity=0.146 Sum_probs=86.4
Q ss_pred cCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE-eeCCCCCCCCCCCCc
Q 021691 132 MFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT-LHWNQDDFPYIVDTF 209 (309)
Q Consensus 132 ~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~-l~w~~~~~~~~~~~f 209 (309)
....++|||+|++.|+-++.+|..++ ..+++.+|.+++..+.+++|++..+.. .++.... +|+-+.......++|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~---~~i~~~~~gdal~~l~~~~~~~f 133 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD---DRIELLLGGDALDVLSRLLDGSF 133 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc---ceEEEEecCcHHHHHHhccCCCc
Confidence 34789999999999999999999888 679999999999999999999999984 3455554 354433222456899
Q ss_pred cEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 210 DVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 210 DvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
|+|+. |+ .+...+..+..+.++|++|| +++++
T Consensus 134 DliFI-Da--dK~~yp~~le~~~~lLr~GG---liv~D 165 (219)
T COG4122 134 DLVFI-DA--DKADYPEYLERALPLLRPGG---LIVAD 165 (219)
T ss_pred cEEEE-eC--ChhhCHHHHHHHHHHhCCCc---EEEEe
Confidence 99998 43 57788999999999999999 55555
No 123
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.13 E-value=1.5e-09 Score=104.72 Aligned_cols=131 Identities=14% Similarity=0.069 Sum_probs=89.5
Q ss_pred cCCCCeEEEeCCCCChhhHHHHHhc-CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691 132 MFRSKRVIELGSGYGLAGLVIAATT-EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD 210 (309)
Q Consensus 132 ~~~g~~VLELG~GtG~~~l~la~~~-~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD 210 (309)
..+|.+|||+|||+|..++.+++.. +..+|+++|+++.+++.+++|++.+++. ++.+...|...... ...++||
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~----~v~~~~~D~~~~~~-~~~~~fD 322 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT----NIETKALDARKVHE-KFAEKFD 322 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----eEEEEeCCcccccc-hhcccCC
Confidence 3468899999999999999988876 4579999999999999999999998873 36666665543211 1126799
Q ss_pred EEEEcCCCCCcc---------------c-------HHHHHHHHHHHHhcCCCeEEEEEeecC--CchHHHHHHHHHhC-C
Q 021691 211 VIVASDCTFFKE---------------F-------HKDLARIIKFLLKKVGPSEALFFSPKR--GDSLDKFLEEIEGN-H 265 (309)
Q Consensus 211 vIi~~d~ly~~~---------------~-------~~~ll~~l~~lLk~~G~~~~ii~~~~r--~~~~~~f~~~~~~~-G 265 (309)
+|++..+.+... + ...++..+.++|+||| .+++.++.- .+........++++ +
T Consensus 323 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG--~lvystcs~~~~Ene~vv~~~l~~~~~ 400 (444)
T PRK14902 323 KILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGG--ILVYSTCTIEKEENEEVIEAFLEEHPE 400 (444)
T ss_pred EEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCC--EEEEEcCCCChhhhHHHHHHHHHhCCC
Confidence 999844322111 1 2457889999999999 566554332 23333344445554 3
Q ss_pred CeEE
Q 021691 266 LHFS 269 (309)
Q Consensus 266 ~~~~ 269 (309)
|...
T Consensus 401 ~~~~ 404 (444)
T PRK14902 401 FELV 404 (444)
T ss_pred cEEe
Confidence 5543
No 124
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.13 E-value=1.5e-09 Score=94.53 Aligned_cols=146 Identities=12% Similarity=0.007 Sum_probs=92.2
Q ss_pred HHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCC-----------CC
Q 021691 119 EDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAF-----------GG 187 (309)
Q Consensus 119 a~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~-----------~~ 187 (309)
...|.+++.... ..++.+|||+|||.|.-++.+|.+ +.+|+++|+++.+++.+.. .++... ..
T Consensus 20 ~~~l~~~~~~l~-~~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~ 93 (213)
T TIGR03840 20 NPLLVKHWPALG-LPAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRA 93 (213)
T ss_pred CHHHHHHHHhhC-CCCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeec
Confidence 455666665431 135679999999999999999986 7799999999999997633 222211 12
Q ss_pred CceEEEEeeCCCCCCCCCCCCccEEEEcCCCCC--cccHHHHHHHHHHHHhcCCCeEEEEEeec-----C---CchHHHH
Q 021691 188 TTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFF--KEFHKDLARIIKFLLKKVGPSEALFFSPK-----R---GDSLDKF 257 (309)
Q Consensus 188 ~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~--~~~~~~ll~~l~~lLk~~G~~~~ii~~~~-----r---~~~~~~f 257 (309)
.+|++...|..+... ...++||.|+...++.+ .+..+..++.+.++|+|||...++.+... + .-+.+++
T Consensus 94 ~~v~~~~~D~~~~~~-~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~~~eL 172 (213)
T TIGR03840 94 GNIEIFCGDFFALTA-ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVSPAEV 172 (213)
T ss_pred CceEEEEccCCCCCc-ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCCHHHH
Confidence 345555555443221 11357999998665544 45677899999999999994323322221 1 1234555
Q ss_pred HHHHHhCCCeEEEEe
Q 021691 258 LEEIEGNHLHFSIIE 272 (309)
Q Consensus 258 ~~~~~~~G~~~~~~~ 272 (309)
.+.+. .++.++.++
T Consensus 173 ~~~f~-~~~~i~~~~ 186 (213)
T TIGR03840 173 EALYG-GHYEIELLE 186 (213)
T ss_pred HHHhc-CCceEEEEe
Confidence 55554 345555544
No 125
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=4.3e-10 Score=107.26 Aligned_cols=151 Identities=17% Similarity=0.163 Sum_probs=110.0
Q ss_pred HHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC
Q 021691 119 EDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN 198 (309)
Q Consensus 119 a~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~ 198 (309)
+..|..+.....+..++.+||||-||.|.+|+.||+. ..+|+++|+++++++.+++|++.|++. ++.+...+-.
T Consensus 278 ~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~----N~~f~~~~ae 351 (432)
T COG2265 278 AEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGID----NVEFIAGDAE 351 (432)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCC----cEEEEeCCHH
Confidence 5667777777777778889999999999999999975 789999999999999999999999984 4666555332
Q ss_pred CCCCCC-CCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEeccCch
Q 021691 199 QDDFPY-IVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYNAE 277 (309)
Q Consensus 199 ~~~~~~-~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~~~~~ 277 (309)
...... ....||.|+. |+.--. .-+.+++.+.++ +. .-|++...++.|+.+....+.+.|+.++.+..+|.-
T Consensus 352 ~~~~~~~~~~~~d~Vvv-DPPR~G-~~~~~lk~l~~~---~p--~~IvYVSCNP~TlaRDl~~L~~~gy~i~~v~~~DmF 424 (432)
T COG2265 352 EFTPAWWEGYKPDVVVV-DPPRAG-ADREVLKQLAKL---KP--KRIVYVSCNPATLARDLAILASTGYEIERVQPFDMF 424 (432)
T ss_pred HHhhhccccCCCCEEEE-CCCCCC-CCHHHHHHHHhc---CC--CcEEEEeCCHHHHHHHHHHHHhCCeEEEEEEEeccC
Confidence 211111 2357899999 554322 223444544443 22 223334447789999999999999999999888877
Q ss_pred hhhhh
Q 021691 278 IWKRH 282 (309)
Q Consensus 278 ~~~~~ 282 (309)
+|..|
T Consensus 425 P~T~H 429 (432)
T COG2265 425 PHTHH 429 (432)
T ss_pred CCccc
Confidence 77655
No 126
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.11 E-value=7.9e-11 Score=106.30 Aligned_cols=158 Identities=23% Similarity=0.131 Sum_probs=101.8
Q ss_pred ccCCCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCC
Q 021691 106 NIDNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAF 185 (309)
Q Consensus 106 ~~~~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~ 185 (309)
..-.||+. .-....=.++... .+|++||++-|-||.+|+.+++ .|+.+|+.+|.|..+++.+++|+..|++..
T Consensus 101 ~gqktGlF---lDqR~nR~~v~~~---~~gkrvLnlFsYTGgfsv~Aa~-gGA~~v~~VD~S~~al~~a~~N~~lNg~~~ 173 (286)
T PF10672_consen 101 DGQKTGLF---LDQRENRKWVRKY---AKGKRVLNLFSYTGGFSVAAAA-GGAKEVVSVDSSKRALEWAKENAALNGLDL 173 (286)
T ss_dssp SSSSTSS----GGGHHHHHHHHHH---CTTCEEEEET-TTTHHHHHHHH-TTESEEEEEES-HHHHHHHHHHHHHTT-CC
T ss_pred CCCcceEc---HHHHhhHHHHHHH---cCCCceEEecCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 34678985 1112222233332 3689999999999999998554 677899999999999999999999999853
Q ss_pred CCCceEEEEeeCCCCCC-CCCCCCccEEEEcCCCCC------cccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHH
Q 021691 186 GGTTVKSMTLHWNQDDF-PYIVDTFDVIVASDCTFF------KEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFL 258 (309)
Q Consensus 186 ~~~~v~~~~l~w~~~~~-~~~~~~fDvIi~~d~ly~------~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~ 258 (309)
..+++...|.-.... -...++||+||+-.+.|. ..++..++..+.++|+++| .++.+++...-+.+.|.
T Consensus 174 --~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG--~l~~~scs~~i~~~~l~ 249 (286)
T PF10672_consen 174 --DRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGG--LLLTCSCSHHISPDFLL 249 (286)
T ss_dssp --TCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEE--EEEEEE--TTS-HHHHH
T ss_pred --cceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCC--EEEEEcCCcccCHHHHH
Confidence 345554433211000 011358999999555554 2357788999999999999 66667776666677788
Q ss_pred HHHHhCCCeEEEEecc
Q 021691 259 EEIEGNHLHFSIIENY 274 (309)
Q Consensus 259 ~~~~~~G~~~~~~~~~ 274 (309)
+.+.+.+-.++.++.+
T Consensus 250 ~~~~~~a~~~~~~~~~ 265 (286)
T PF10672_consen 250 EAVAEAAREVEFIERL 265 (286)
T ss_dssp HHHHHHHHHCEEEEEE
T ss_pred HHHHHhCccceEeeee
Confidence 8777766555555543
No 127
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.11 E-value=2.4e-09 Score=103.37 Aligned_cols=127 Identities=19% Similarity=0.170 Sum_probs=89.7
Q ss_pred CCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCC
Q 021691 110 TGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGT 188 (309)
Q Consensus 110 tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~ 188 (309)
-|...+++.+..++-.++. ..+|++|||+|||+|..++.+++..+ ..+|+++|.++.+++.+++|+..+++.
T Consensus 229 ~G~~~vqd~~s~l~~~~l~---~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~---- 301 (445)
T PRK14904 229 LGLVSVQNPTQALACLLLN---PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT---- 301 (445)
T ss_pred CcEEEEeCHHHHHHHHhcC---CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC----
Confidence 4555578655555544443 35789999999999999988887653 469999999999999999999988762
Q ss_pred ceEEEEeeCCCCCCCCCCCCccEEEEcCCCCC----------------cc-------cHHHHHHHHHHHHhcCCCeEEEE
Q 021691 189 TVKSMTLHWNQDDFPYIVDTFDVIVASDCTFF----------------KE-------FHKDLARIIKFLLKKVGPSEALF 245 (309)
Q Consensus 189 ~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~----------------~~-------~~~~ll~~l~~lLk~~G~~~~ii 245 (309)
++.+...|..... ...+||+|++ |+.+. .+ ....++..+.++|++|| .+++
T Consensus 302 ~v~~~~~Da~~~~---~~~~fD~Vl~-D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG--~lvy 375 (445)
T PRK14904 302 IIETIEGDARSFS---PEEQPDAILL-DAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGG--VLVY 375 (445)
T ss_pred eEEEEeCcccccc---cCCCCCEEEE-cCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCc--EEEE
Confidence 4555555443221 2357999997 43221 01 12358999999999999 5666
Q ss_pred Eeec
Q 021691 246 FSPK 249 (309)
Q Consensus 246 ~~~~ 249 (309)
.++.
T Consensus 376 stcs 379 (445)
T PRK14904 376 ATCS 379 (445)
T ss_pred EeCC
Confidence 5543
No 128
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.11 E-value=1e-09 Score=82.28 Aligned_cols=97 Identities=23% Similarity=0.236 Sum_probs=75.9
Q ss_pred eEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEcC
Q 021691 137 RVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASD 216 (309)
Q Consensus 137 ~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d 216 (309)
+|+|+|||+|..+..+++ .+..+++++|.++.+++.++++...+.. ..+.+...++..... ...++||+|+++.
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLA----DNVEVLKGDAEELPP-EADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccc----cceEEEEcChhhhcc-ccCCceEEEEEcc
Confidence 589999999999988777 4678999999999999999864433332 345555555543322 2346799999999
Q ss_pred CCCC-cccHHHHHHHHHHHHhcCC
Q 021691 217 CTFF-KEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 217 ~ly~-~~~~~~ll~~l~~lLk~~G 239 (309)
++++ ......+++.+.++++++|
T Consensus 75 ~~~~~~~~~~~~l~~~~~~l~~~g 98 (107)
T cd02440 75 PLHHLVEDLARFLEEARRLLKPGG 98 (107)
T ss_pred ceeehhhHHHHHHHHHHHHcCCCC
Confidence 9888 8889999999999999999
No 129
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.11 E-value=7.4e-10 Score=103.88 Aligned_cols=134 Identities=25% Similarity=0.203 Sum_probs=97.8
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE---eeCCCCCCCCCCCCc
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT---LHWNQDDFPYIVDTF 209 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~---l~w~~~~~~~~~~~f 209 (309)
..|++||++-|-||.+|+.+|. .|+.+||.+|.|..+++.+++|++.|++... ++.... ++|-... .....+|
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~-gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~--~~~~i~~Dvf~~l~~~-~~~g~~f 291 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAAL-GGASEVTSVDLSKRALEWARENAELNGLDGD--RHRFIVGDVFKWLRKA-ERRGEKF 291 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHh-cCCCceEEEeccHHHHHHHHHHHHhcCCCcc--ceeeehhhHHHHHHHH-HhcCCcc
Confidence 4599999999999999999555 5777999999999999999999999998532 222222 2221111 1224589
Q ss_pred cEEEEcCCCCC---------cccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHH----hCCCeEEEEe
Q 021691 210 DVIVASDCTFF---------KEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIE----GNHLHFSIIE 272 (309)
Q Consensus 210 DvIi~~d~ly~---------~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~----~~G~~~~~~~ 272 (309)
|+||.-++-|. ..++..++....++|+|+| .++++++.+.-..+.|.+.+. ..|...+.++
T Consensus 292 DlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG--~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~~ 365 (393)
T COG1092 292 DLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGG--TLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEIE 365 (393)
T ss_pred cEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCC--EEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEee
Confidence 99999555554 2467889999999999999 777788777777777766554 4455555554
No 130
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.10 E-value=4.5e-10 Score=101.02 Aligned_cols=110 Identities=14% Similarity=0.151 Sum_probs=76.2
Q ss_pred CCCeEEEeCCCCCh----hhHHHHHhcC-----CcEEEEEcCCHHHHHHHHHHHHh----ccCC-----------C----
Q 021691 134 RSKRVIELGSGYGL----AGLVIAATTE-----ALEVVISDGNPQVVDYIQRNVDA----NSGA-----------F---- 185 (309)
Q Consensus 134 ~g~~VLELG~GtG~----~~l~la~~~~-----~~~V~~tD~~~~~l~~~~~n~~~----n~~~-----------~---- 185 (309)
++.+|+|+|||||. +++.+++..+ ..+|+|+|+|+.||+.+++.+-. .++. .
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 4555665443 35899999999999999976410 1110 0
Q ss_pred ----CCCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCc--ccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 186 ----GGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFK--EFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 186 ----~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
-...|.+...|..... ...++||+|+|.+++++. +....+++.+.+.|+||| .+++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~--~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG--~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAES--PPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGG--YLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCC--CccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCe--EEEEEC
Confidence 0124555555544322 235789999999887664 456789999999999999 555543
No 131
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.10 E-value=4.4e-11 Score=102.28 Aligned_cols=148 Identities=22% Similarity=0.216 Sum_probs=98.4
Q ss_pred cCCCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCC
Q 021691 107 IDNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFG 186 (309)
Q Consensus 107 ~~~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~ 186 (309)
.++-|+. -| +.|++-+... ..-+=+++||||||||+.|..+-.. +.+.+++|+|..|++.+.++--...+.
T Consensus 103 VdkL~Y~--vP--~~l~emI~~~-~~g~F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eKg~YD~L~-- 173 (287)
T COG4976 103 VDKLGYS--VP--ELLAEMIGKA-DLGPFRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEKGLYDTLY-- 173 (287)
T ss_pred HHHhcCc--cH--HHHHHHHHhc-cCCccceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhccchHHHH--
Confidence 4555553 12 4555544332 2222479999999999999987666 679999999999999887653222110
Q ss_pred CCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeec--------------C-C
Q 021691 187 GTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK--------------R-G 251 (309)
Q Consensus 187 ~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~--------------r-~ 251 (309)
......+.. .....+||+|.++|++-.....+.++.....+|+++| ++.++.. | .
T Consensus 174 ----~Aea~~Fl~---~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gG---lfaFSvE~l~~~~~f~l~ps~RyA 243 (287)
T COG4976 174 ----VAEAVLFLE---DLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGG---LFAFSVETLPDDGGFVLGPSQRYA 243 (287)
T ss_pred ----HHHHHHHhh---hccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCc---eEEEEecccCCCCCeecchhhhhc
Confidence 000000111 1234689999999999999999999999999999999 4444421 1 1
Q ss_pred chHHHHHHHHHhCCCeEEEEec
Q 021691 252 DSLDKFLEEIEGNHLHFSIIEN 273 (309)
Q Consensus 252 ~~~~~f~~~~~~~G~~~~~~~~ 273 (309)
....-....+...||.+..++.
T Consensus 244 H~~~YVr~~l~~~Gl~~i~~~~ 265 (287)
T COG4976 244 HSESYVRALLAASGLEVIAIED 265 (287)
T ss_pred cchHHHHHHHHhcCceEEEeec
Confidence 2223456778889999866654
No 132
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.09 E-value=2.8e-09 Score=95.98 Aligned_cols=110 Identities=17% Similarity=0.120 Sum_probs=79.9
Q ss_pred cCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691 132 MFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD 210 (309)
Q Consensus 132 ~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD 210 (309)
..+|.+|||+|||+|..++.+|...+ .+.|+++|.++.+++.+++|++.+++. ++.+...|... .....+.||
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~----~v~~~~~D~~~--~~~~~~~fD 142 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL----NVAVTNFDGRV--FGAAVPKFD 142 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC----cEEEecCCHHH--hhhhccCCC
Confidence 35788999999999999999888764 358999999999999999999998872 45555544322 122235699
Q ss_pred EEEEcCCCCCc---------------c-------cHHHHHHHHHHHHhcCCCeEEEEEeec
Q 021691 211 VIVASDCTFFK---------------E-------FHKDLARIIKFLLKKVGPSEALFFSPK 249 (309)
Q Consensus 211 vIi~~d~ly~~---------------~-------~~~~ll~~l~~lLk~~G~~~~ii~~~~ 249 (309)
+|++..+.... . ....+++.+.++|++|| .++++++.
T Consensus 143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG--~lvYstcs 201 (264)
T TIGR00446 143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGG--VLVYSTCS 201 (264)
T ss_pred EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCC--EEEEEeCC
Confidence 99983332211 0 12458888999999999 66666544
No 133
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.09 E-value=1.2e-09 Score=92.24 Aligned_cols=116 Identities=16% Similarity=0.223 Sum_probs=85.6
Q ss_pred eEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceE-EEEeeCCCCCCC-CCCCCccEEEE
Q 021691 137 RVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVK-SMTLHWNQDDFP-YIVDTFDVIVA 214 (309)
Q Consensus 137 ~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~-~~~l~w~~~~~~-~~~~~fDvIi~ 214 (309)
.|||+|||||..--+. .--+..+|+++|.++.|-+.+.+.+..+.. .++. +...+. ++.+ ..++++|+|++
T Consensus 79 ~vLEvgcGtG~Nfkfy-~~~p~~svt~lDpn~~mee~~~ks~~E~k~----~~~~~fvva~g--e~l~~l~d~s~DtVV~ 151 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFY-PWKPINSVTCLDPNEKMEEIADKSAAEKKP----LQVERFVVADG--ENLPQLADGSYDTVVC 151 (252)
T ss_pred ceEEecccCCCCcccc-cCCCCceEEEeCCcHHHHHHHHHHHhhccC----cceEEEEeech--hcCcccccCCeeeEEE
Confidence 6899999999765442 223567999999999999999999998854 2333 222221 2333 34689999999
Q ss_pred cCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCC--chHHHHHHHH
Q 021691 215 SDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRG--DSLDKFLEEI 261 (309)
Q Consensus 215 ~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~--~~~~~f~~~~ 261 (309)
.-++-..++....++.++++|+||| .+++..+.+. .+...+++..
T Consensus 152 TlvLCSve~~~k~L~e~~rlLRpgG--~iifiEHva~~y~~~n~i~q~v 198 (252)
T KOG4300|consen 152 TLVLCSVEDPVKQLNEVRRLLRPGG--RIIFIEHVAGEYGFWNRILQQV 198 (252)
T ss_pred EEEEeccCCHHHHHHHHHHhcCCCc--EEEEEecccccchHHHHHHHHH
Confidence 9999999999999999999999999 6666665553 3444455443
No 134
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.08 E-value=3e-09 Score=102.38 Aligned_cols=131 Identities=13% Similarity=0.058 Sum_probs=89.9
Q ss_pred CcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC--CCCC
Q 021691 131 DMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP--YIVD 207 (309)
Q Consensus 131 ~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~--~~~~ 207 (309)
...+|.+|||+|||+|..++.++...+ .++|+++|.++.+++.+++|+..+++. ++.+...|....... ...+
T Consensus 249 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~----~v~~~~~D~~~~~~~~~~~~~ 324 (434)
T PRK14901 249 DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK----SIKILAADSRNLLELKPQWRG 324 (434)
T ss_pred CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC----eEEEEeCChhhcccccccccc
Confidence 445789999999999999999888754 469999999999999999999999873 455555543322111 2246
Q ss_pred CccEEEEcCCC------CCcc----------------cHHHHHHHHHHHHhcCCCeEEEEEeec--CCchHHHHHHHHHh
Q 021691 208 TFDVIVASDCT------FFKE----------------FHKDLARIIKFLLKKVGPSEALFFSPK--RGDSLDKFLEEIEG 263 (309)
Q Consensus 208 ~fDvIi~~d~l------y~~~----------------~~~~ll~~l~~lLk~~G~~~~ii~~~~--r~~~~~~f~~~~~~ 263 (309)
+||.|++..+. .... ....++..+.++|+||| .++++++. ..+........+++
T Consensus 325 ~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG--~lvystcsi~~~Ene~~v~~~l~~ 402 (434)
T PRK14901 325 YFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGG--TLVYATCTLHPAENEAQIEQFLAR 402 (434)
T ss_pred cCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCC--EEEEEeCCCChhhHHHHHHHHHHh
Confidence 89999983221 1111 13578899999999999 56655533 33444445555555
Q ss_pred C-CCe
Q 021691 264 N-HLH 267 (309)
Q Consensus 264 ~-G~~ 267 (309)
+ +|.
T Consensus 403 ~~~~~ 407 (434)
T PRK14901 403 HPDWK 407 (434)
T ss_pred CCCcE
Confidence 5 454
No 135
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.07 E-value=3e-09 Score=93.40 Aligned_cols=106 Identities=13% Similarity=0.177 Sum_probs=77.4
Q ss_pred cccHHHHHHHHhh--CcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEE
Q 021691 116 WPSEDVLAFFSLS--HADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSM 193 (309)
Q Consensus 116 W~sa~~La~~l~~--~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~ 193 (309)
|+.++.+-..+.. +...+.+..+||+|||+|..++.+++.++...|+|+|.++.++..+.+|++.+++. +.+.+.
T Consensus 128 pETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~---g~i~v~ 204 (328)
T KOG2904|consen 128 PETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLS---GRIEVI 204 (328)
T ss_pred ccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhc---CceEEE
Confidence 6655554333332 33455667899999999999999999999999999999999999999999999884 556665
Q ss_pred EeeCCCCC---CCCCCCCccEEEEcCCCCCcccH
Q 021691 194 TLHWNQDD---FPYIVDTFDVIVASDCTFFKEFH 224 (309)
Q Consensus 194 ~l~w~~~~---~~~~~~~fDvIi~~d~ly~~~~~ 224 (309)
..+...+. .+.+.++.|+++++.+.-..++.
T Consensus 205 ~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~ 238 (328)
T KOG2904|consen 205 HNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDN 238 (328)
T ss_pred ecccccccccccccccCceeEEecCCCcccccch
Confidence 44332221 22446899999997665444443
No 136
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.07 E-value=1.6e-09 Score=95.83 Aligned_cols=134 Identities=19% Similarity=0.190 Sum_probs=97.0
Q ss_pred HHhhCcCcCCCCeEEEeCCCCChhhHHHHHhc-CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC
Q 021691 125 FSLSHADMFRSKRVIELGSGYGLAGLVIAATT-EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP 203 (309)
Q Consensus 125 ~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~-~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~ 203 (309)
++....++.+|.+|||-|.|+|.++..++... +.++|+..|.+++..+.+++|++.+++. ..|.+..-|...+...
T Consensus 31 ~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~---~~v~~~~~Dv~~~g~~ 107 (247)
T PF08704_consen 31 YILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD---DNVTVHHRDVCEEGFD 107 (247)
T ss_dssp HHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC---TTEEEEES-GGCG--S
T ss_pred HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC---CCceeEecceeccccc
Confidence 34445678899999999999999999999765 4579999999999999999999999883 5678877777543322
Q ss_pred -CCCCCccEEEEcCCCCCcccHHHHHHHHHHHH-hcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEE
Q 021691 204 -YIVDTFDVIVASDCTFFKEFHKDLARIIKFLL-KKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFS 269 (309)
Q Consensus 204 -~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lL-k~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~ 269 (309)
.....+|.|+. |. ..+...+..+.+.| ++|| .+..+.|.- +...+..+.+++.||...
T Consensus 108 ~~~~~~~DavfL-Dl----p~Pw~~i~~~~~~L~~~gG--~i~~fsP~i-eQv~~~~~~L~~~gf~~i 167 (247)
T PF08704_consen 108 EELESDFDAVFL-DL----PDPWEAIPHAKRALKKPGG--RICCFSPCI-EQVQKTVEALREHGFTDI 167 (247)
T ss_dssp TT-TTSEEEEEE-ES----SSGGGGHHHHHHHE-EEEE--EEEEEESSH-HHHHHHHHHHHHTTEEEE
T ss_pred ccccCcccEEEE-eC----CCHHHHHHHHHHHHhcCCc--eEEEECCCH-HHHHHHHHHHHHCCCeee
Confidence 23468999998 43 45566788888999 8888 666666543 345677889999998753
No 137
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.06 E-value=2.8e-09 Score=98.22 Aligned_cols=106 Identities=19% Similarity=0.168 Sum_probs=76.0
Q ss_pred HHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCC-cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCC
Q 021691 122 LAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEA-LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQD 200 (309)
Q Consensus 122 La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~-~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~ 200 (309)
+..++.+..++.++.+|||+|||+|..+..+++..+. .+|+++|.++++++.+++++..++.. ++.+...|....
T Consensus 68 l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~----nV~~i~gD~~~~ 143 (322)
T PRK13943 68 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE----NVIFVCGDGYYG 143 (322)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC----cEEEEeCChhhc
Confidence 3334444455667899999999999999999987653 47999999999999999999988763 455544443211
Q ss_pred CCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691 201 DFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 201 ~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G 239 (309)
.....+||+|++...+ +.....+.+.|+++|
T Consensus 144 --~~~~~~fD~Ii~~~g~------~~ip~~~~~~LkpgG 174 (322)
T PRK13943 144 --VPEFAPYDVIFVTVGV------DEVPETWFTQLKEGG 174 (322)
T ss_pred --ccccCCccEEEECCch------HHhHHHHHHhcCCCC
Confidence 1122579999986332 223445678899999
No 138
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.06 E-value=2e-10 Score=97.63 Aligned_cols=111 Identities=21% Similarity=0.284 Sum_probs=74.9
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC--CCCCCCCcc
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD--FPYIVDTFD 210 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~--~~~~~~~fD 210 (309)
..|.+||||.||+|.+|+.++. .|+.+|+++|.++.++..+++|++.-+.. .++.+...|..... ......+||
T Consensus 41 ~~g~~vLDLFaGSGalGlEALS-RGA~~v~fVE~~~~a~~~i~~N~~~l~~~---~~~~v~~~d~~~~l~~~~~~~~~fD 116 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALS-RGAKSVVFVEKNRKAIKIIKKNLEKLGLE---DKIRVIKGDAFKFLLKLAKKGEKFD 116 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHH-TT-SEEEEEES-HHHHHHHHHHHHHHT-G---GGEEEEESSHHHHHHHHHHCTS-EE
T ss_pred cCCCeEEEcCCccCccHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHHhCCC---cceeeeccCHHHHHHhhcccCCCce
Confidence 6899999999999999999555 57899999999999999999999987763 23444433321111 001247899
Q ss_pred EEEEcCCCCCccc-HHHHHHHHH--HHHhcCCCeEEEEEeecC
Q 021691 211 VIVASDCTFFKEF-HKDLARIIK--FLLKKVGPSEALFFSPKR 250 (309)
Q Consensus 211 vIi~~d~ly~~~~-~~~ll~~l~--~lLk~~G~~~~ii~~~~r 250 (309)
+|++ |+.|.... ...++..+. .+|+++| .+++-+..+
T Consensus 117 iIfl-DPPY~~~~~~~~~l~~l~~~~~l~~~~--~ii~E~~~~ 156 (183)
T PF03602_consen 117 IIFL-DPPYAKGLYYEELLELLAENNLLNEDG--LIIIEHSKK 156 (183)
T ss_dssp EEEE---STTSCHHHHHHHHHHHHTTSEEEEE--EEEEEEETT
T ss_pred EEEE-CCCcccchHHHHHHHHHHHCCCCCCCE--EEEEEecCC
Confidence 9999 89999887 488888887 6888888 444433333
No 139
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.06 E-value=3.8e-09 Score=92.34 Aligned_cols=146 Identities=12% Similarity=0.039 Sum_probs=91.6
Q ss_pred HHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCC-----------CC
Q 021691 119 EDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAF-----------GG 187 (309)
Q Consensus 119 a~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~-----------~~ 187 (309)
...|.+|+... ...++.+|||+|||.|.-++.||.. +.+|+|+|+++.+++.+.. .+++.. ..
T Consensus 23 ~~~L~~~~~~~-~~~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~ 96 (218)
T PRK13255 23 NPLLQKYWPAL-ALPAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQA 96 (218)
T ss_pred CHHHHHHHHhh-CCCCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHH---HcCCCcccccccccccccc
Confidence 34456666432 2235679999999999999999886 7799999999999998642 333321 12
Q ss_pred CceEEEEeeCCCCCCCCCCCCccEEEEcCCCCC--cccHHHHHHHHHHHHhcCCCeEEEEEee--c---C---CchHHHH
Q 021691 188 TTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFF--KEFHKDLARIIKFLLKKVGPSEALFFSP--K---R---GDSLDKF 257 (309)
Q Consensus 188 ~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~--~~~~~~ll~~l~~lLk~~G~~~~ii~~~--~---r---~~~~~~f 257 (309)
.+|+....|.-+... ...+.||.|+...++.+ .+.....++.+.++|+|||...++.... . + .-+.+++
T Consensus 97 ~~v~~~~~D~~~l~~-~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~el 175 (218)
T PRK13255 97 GEITIYCGDFFALTA-ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEEV 175 (218)
T ss_pred CceEEEECcccCCCc-ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHHH
Confidence 344444443332211 12357999997665444 5567889999999999999433322221 1 1 1245566
Q ss_pred HHHHHhCCCeEEEEe
Q 021691 258 LEEIEGNHLHFSIIE 272 (309)
Q Consensus 258 ~~~~~~~G~~~~~~~ 272 (309)
.+.+.. +|.++.++
T Consensus 176 ~~~~~~-~~~i~~~~ 189 (218)
T PRK13255 176 EALYAG-CFEIELLE 189 (218)
T ss_pred HHHhcC-CceEEEee
Confidence 666643 35655544
No 140
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2.1e-09 Score=91.95 Aligned_cols=112 Identities=18% Similarity=0.152 Sum_probs=83.4
Q ss_pred ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691 115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT 194 (309)
Q Consensus 115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ 194 (309)
.|=++-.+...+.+...+.+|.+|||+|||+|..+-.+|+. ..+|+.+|..++..+.+++|++..+.. +|.+..
T Consensus 53 qtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l--~~~V~siEr~~~L~~~A~~~L~~lg~~----nV~v~~ 126 (209)
T COG2518 53 QTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARL--VGRVVSIERIEELAEQARRNLETLGYE----NVTVRH 126 (209)
T ss_pred ceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHH--hCeEEEEEEcHHHHHHHHHHHHHcCCC----ceEEEE
Confidence 34455555556666677889999999999999999999998 449999999999999999999998883 466666
Q ss_pred eeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCC
Q 021691 195 LHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGP 240 (309)
Q Consensus 195 l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~ 240 (309)
.|....- ....+||.|+..-..- .+-+.+.+-|++||+
T Consensus 127 gDG~~G~--~~~aPyD~I~Vtaaa~------~vP~~Ll~QL~~gGr 164 (209)
T COG2518 127 GDGSKGW--PEEAPYDRIIVTAAAP------EVPEALLDQLKPGGR 164 (209)
T ss_pred CCcccCC--CCCCCcCEEEEeeccC------CCCHHHHHhcccCCE
Confidence 5543221 1247899998854432 222456677899994
No 141
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.04 E-value=2.1e-09 Score=97.22 Aligned_cols=110 Identities=15% Similarity=0.222 Sum_probs=73.8
Q ss_pred HHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCC---cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEe
Q 021691 119 EDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEA---LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTL 195 (309)
Q Consensus 119 a~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~---~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l 195 (309)
...++..+..... ..+.+|||+|||+|..+..+++..+. ..|+++|+++.|++.++++. .++.+...
T Consensus 71 ~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---------~~~~~~~~ 140 (272)
T PRK11088 71 RDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---------PQVTFCVA 140 (272)
T ss_pred HHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---------CCCeEEEe
Confidence 3444444543321 24568999999999999888876542 37999999999999987652 12333333
Q ss_pred eCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeec
Q 021691 196 HWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK 249 (309)
Q Consensus 196 ~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~ 249 (309)
+. ...+..+++||+|++... +..++.+.++|+||| .+++..+.
T Consensus 141 d~--~~lp~~~~sfD~I~~~~~-------~~~~~e~~rvLkpgG--~li~~~p~ 183 (272)
T PRK11088 141 SS--HRLPFADQSLDAIIRIYA-------PCKAEELARVVKPGG--IVITVTPG 183 (272)
T ss_pred ec--ccCCCcCCceeEEEEecC-------CCCHHHHHhhccCCC--EEEEEeCC
Confidence 32 223445678999998543 234678999999999 56555543
No 142
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.00 E-value=9.7e-09 Score=96.17 Aligned_cols=149 Identities=15% Similarity=0.142 Sum_probs=98.1
Q ss_pred HHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC
Q 021691 119 EDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN 198 (309)
Q Consensus 119 a~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~ 198 (309)
...|.+++...... .+++|||||||+|.+++.+++. +.+|+++|.++++++.+++|+..|++. ++.+...|..
T Consensus 183 ~~~l~~~v~~~~~~-~~~~vlDl~~G~G~~sl~la~~--~~~v~~vE~~~~av~~a~~n~~~~~~~----~v~~~~~d~~ 255 (353)
T TIGR02143 183 NIKMLEWACEVTQG-SKGDLLELYCGNGNFSLALAQN--FRRVLATEIAKPSVNAAQYNIAANNID----NVQIIRMSAE 255 (353)
T ss_pred HHHHHHHHHHHhhc-CCCcEEEEeccccHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCC----cEEEEEcCHH
Confidence 34555555544322 2347999999999999998887 469999999999999999999999873 4555554443
Q ss_pred CCCCC------C---C-----CCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhC
Q 021691 199 QDDFP------Y---I-----VDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGN 264 (309)
Q Consensus 199 ~~~~~------~---~-----~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~ 264 (309)
..... . . ...||+|+. |+.. ....+.+++.+.+ +++ +++.++ .+.|+.+-+..+.+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~l-DPPR-~G~~~~~l~~l~~---~~~---ivYvsC-~p~tlaRDl~~L~~- 325 (353)
T TIGR02143 256 EFTQAMNGVREFRRLKGIDLKSYNCSTIFV-DPPR-AGLDPDTCKLVQA---YER---ILYISC-NPETLKANLEQLSE- 325 (353)
T ss_pred HHHHHHhhccccccccccccccCCCCEEEE-CCCC-CCCcHHHHHHHHc---CCc---EEEEEc-CHHHHHHHHHHHhc-
Confidence 21100 0 0 124899999 6663 4445556565544 443 444443 44677766667764
Q ss_pred CCeEEEEeccCchhhhhhhc
Q 021691 265 HLHFSIIENYNAEIWKRHQM 284 (309)
Q Consensus 265 G~~~~~~~~~~~~~~~~~~~ 284 (309)
|+.++.+..+|.-+...|-+
T Consensus 326 ~Y~l~~v~~~DmFP~T~HvE 345 (353)
T TIGR02143 326 THRVERFALFDQFPYTHHME 345 (353)
T ss_pred CcEEEEEEEcccCCCCCcEE
Confidence 49998888888766555533
No 143
>PLN02476 O-methyltransferase
Probab=99.00 E-value=2e-09 Score=96.82 Aligned_cols=108 Identities=15% Similarity=0.167 Sum_probs=82.3
Q ss_pred CcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC----CCC
Q 021691 131 DMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF----PYI 205 (309)
Q Consensus 131 ~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~----~~~ 205 (309)
...+.++|||+|+|+|..++.+|+..+ .++|+.+|.+++..+.+++|++.+++. .++++...+..+... ...
T Consensus 115 ~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~---~~I~li~GdA~e~L~~l~~~~~ 191 (278)
T PLN02476 115 QILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS---HKVNVKHGLAAESLKSMIQNGE 191 (278)
T ss_pred HhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEEcCHHHHHHHHHhccc
Confidence 445689999999999999999988765 458999999999999999999999984 456655443322110 011
Q ss_pred CCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 206 VDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 206 ~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
.++||+|+. |. ....+...++.+.++|++|| +++++
T Consensus 192 ~~~FD~VFI-Da--~K~~Y~~y~e~~l~lL~~GG---vIV~D 227 (278)
T PLN02476 192 GSSYDFAFV-DA--DKRMYQDYFELLLQLVRVGG---VIVMD 227 (278)
T ss_pred CCCCCEEEE-CC--CHHHHHHHHHHHHHhcCCCc---EEEEe
Confidence 358999999 54 36678899999999999999 45544
No 144
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.99 E-value=5.3e-09 Score=89.18 Aligned_cols=122 Identities=16% Similarity=0.249 Sum_probs=87.4
Q ss_pred CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691 134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV 213 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi 213 (309)
.+.-|||+|||+|+.|-.+... +...+++|+|+.|++.+...--. + ....-|.+ ...++..++||-+|
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~e-g--------dlil~DMG-~GlpfrpGtFDg~I 117 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERELE-G--------DLILCDMG-EGLPFRPGTFDGVI 117 (270)
T ss_pred CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhhh-c--------CeeeeecC-CCCCCCCCccceEE
Confidence 4668999999999999886554 57899999999999999862111 1 12233444 44567789999999
Q ss_pred EcCCCCCc-----------ccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeE
Q 021691 214 ASDCTFFK-----------EFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHF 268 (309)
Q Consensus 214 ~~d~ly~~-----------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~ 268 (309)
+-..+.+. .-+-.++.+++.+|+++++ .++-+.+......+...+.+..+||.-
T Consensus 118 SISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~r-aV~QfYpen~~q~d~i~~~a~~aGF~G 182 (270)
T KOG1541|consen 118 SISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGAR-AVLQFYPENEAQIDMIMQQAMKAGFGG 182 (270)
T ss_pred EeeeeeeecccCccccChHHHHHHHhhhhhhhhccCce-eEEEecccchHHHHHHHHHHHhhccCC
Confidence 86654331 1234568899999999984 223355666777788888888888753
No 145
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.98 E-value=1.8e-09 Score=93.25 Aligned_cols=121 Identities=15% Similarity=0.085 Sum_probs=89.8
Q ss_pred cHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEee
Q 021691 118 SEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLH 196 (309)
Q Consensus 118 sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~ 196 (309)
.+..-++++.......+.++|||+|+|+|.-++.+|...+ .++|+.+|.+++..+.++++++..++. .+|++...+
T Consensus 29 i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~---~~I~~~~gd 105 (205)
T PF01596_consen 29 ISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD---DRIEVIEGD 105 (205)
T ss_dssp HHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG---GGEEEEES-
T ss_pred cCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC---CcEEEEEec
Confidence 3344444444444455778999999999999999998776 479999999999999999999998873 467776654
Q ss_pred CCCCCC----CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 197 WNQDDF----PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 197 w~~~~~----~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
..+... ....++||+|+. |. ....+...+..+.++|++|| +++++
T Consensus 106 a~~~l~~l~~~~~~~~fD~VFi-Da--~K~~y~~y~~~~~~ll~~gg---vii~D 154 (205)
T PF01596_consen 106 ALEVLPELANDGEEGQFDFVFI-DA--DKRNYLEYFEKALPLLRPGG---VIIAD 154 (205)
T ss_dssp HHHHHHHHHHTTTTTSEEEEEE-ES--TGGGHHHHHHHHHHHEEEEE---EEEEE
T ss_pred cHhhHHHHHhccCCCceeEEEE-cc--cccchhhHHHHHhhhccCCe---EEEEc
Confidence 432100 111358999999 44 47788899999999999999 66665
No 146
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.98 E-value=1.5e-09 Score=93.87 Aligned_cols=104 Identities=17% Similarity=0.156 Sum_probs=72.6
Q ss_pred CeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEc
Q 021691 136 KRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVAS 215 (309)
Q Consensus 136 ~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~ 215 (309)
+.++|+|||+|..++.+|.. -.+|+|||.++.||+.+++.-...-. ....+...- ........+++.|+|+++
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~--~k~VIatD~s~~mL~~a~k~~~~~y~---~t~~~ms~~--~~v~L~g~e~SVDlI~~A 107 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH--YKEVIATDVSEAMLKVAKKHPPVTYC---HTPSTMSSD--EMVDLLGGEESVDLITAA 107 (261)
T ss_pred ceEEEeccCCCcchHHHHHh--hhhheeecCCHHHHHHhhcCCCcccc---cCCcccccc--ccccccCCCcceeeehhh
Confidence 37899999999999998887 56899999999999988764222111 011110000 001112236899999999
Q ss_pred CCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 216 DCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 216 d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
.|+|+-+ .+.+.+.++++|+++|...++...
T Consensus 108 qa~HWFd-le~fy~~~~rvLRk~Gg~iavW~Y 138 (261)
T KOG3010|consen 108 QAVHWFD-LERFYKEAYRVLRKDGGLIAVWNY 138 (261)
T ss_pred hhHHhhc-hHHHHHHHHHHcCCCCCEEEEEEc
Confidence 9998874 689999999999998854444443
No 147
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.98 E-value=9.6e-09 Score=98.66 Aligned_cols=112 Identities=16% Similarity=0.150 Sum_probs=81.2
Q ss_pred CcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCc
Q 021691 131 DMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTF 209 (309)
Q Consensus 131 ~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~f 209 (309)
...+|.+|||+|||+|..++.++...+ ..+|+++|+++.+++.+++|++..++. ++.+...|..... ....++|
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~----~v~~~~~Da~~l~-~~~~~~f 308 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS----SIEIKIADAERLT-EYVQDTF 308 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC----eEEEEECchhhhh-hhhhccC
Confidence 345788999999999999999888763 569999999999999999999988762 4566655543221 1224679
Q ss_pred cEEEEcCCCCCc----------------------ccHHHHHHHHHHHHhcCCCeEEEEEeec
Q 021691 210 DVIVASDCTFFK----------------------EFHKDLARIIKFLLKKVGPSEALFFSPK 249 (309)
Q Consensus 210 DvIi~~d~ly~~----------------------~~~~~ll~~l~~lLk~~G~~~~ii~~~~ 249 (309)
|.|++..+.... .....++..+.++|++|| .++++++.
T Consensus 309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG--~LvYsTCs 368 (431)
T PRK14903 309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGG--ILLYSTCT 368 (431)
T ss_pred CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCC--EEEEEECC
Confidence 999983222111 122557888999999999 56665544
No 148
>PRK00811 spermidine synthase; Provisional
Probab=98.98 E-value=7.2e-09 Score=94.17 Aligned_cols=129 Identities=19% Similarity=0.215 Sum_probs=83.3
Q ss_pred CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccC-CCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691 134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSG-AFGGTTVKSMTLHWNQDDFPYIVDTFDVI 212 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~-~~~~~~v~~~~l~w~~~~~~~~~~~fDvI 212 (309)
.+++||+||||+|..+..+++..+..+|+++|+++.+++.+++++...+. .....++++...|..... ....++||+|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l-~~~~~~yDvI 154 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFV-AETENSFDVI 154 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHH-hhCCCcccEE
Confidence 46899999999999999888765667999999999999999998764321 112345655554432111 1134689999
Q ss_pred EEcCCC--CCcc---cHHHHHHHHHHHHhcCCCeEEEEEeec---CCchHHHHHHHHHhCCC
Q 021691 213 VASDCT--FFKE---FHKDLARIIKFLLKKVGPSEALFFSPK---RGDSLDKFLEEIEGNHL 266 (309)
Q Consensus 213 i~~d~l--y~~~---~~~~ll~~l~~lLk~~G~~~~ii~~~~---r~~~~~~f~~~~~~~G~ 266 (309)
++ |+. +... .-..+++.+++.|+++| .+++.... ....+....+.+++..-
T Consensus 155 i~-D~~dp~~~~~~l~t~ef~~~~~~~L~~gG--vlv~~~~~~~~~~~~~~~i~~tl~~~F~ 213 (283)
T PRK00811 155 IV-DSTDPVGPAEGLFTKEFYENCKRALKEDG--IFVAQSGSPFYQADEIKDMHRKLKEVFP 213 (283)
T ss_pred EE-CCCCCCCchhhhhHHHHHHHHHHhcCCCc--EEEEeCCCcccCHHHHHHHHHHHHHHCC
Confidence 98 431 1111 12567889999999999 44433221 12234445555666533
No 149
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.97 E-value=1.2e-08 Score=87.10 Aligned_cols=135 Identities=19% Similarity=0.222 Sum_probs=98.6
Q ss_pred HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691 120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ 199 (309)
Q Consensus 120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~ 199 (309)
.+|.+++-.. +.+|||||||||-.+..+|+.++.-...-+|.++..+..++..+...+...-.. ...+|...
T Consensus 16 ~vL~~~l~~~-----~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~---P~~lDv~~ 87 (204)
T PF06080_consen 16 EVLKQYLPDS-----GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRP---PLALDVSA 87 (204)
T ss_pred HHHHHHhCcc-----CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCC---CeEeecCC
Confidence 4555555322 226999999999999999999998899999999999999998888877643222 22333333
Q ss_pred CCCC------CCCCCccEEEEcCCCCCc--ccHHHHHHHHHHHHhcCCCeEEEEEeecC------CchHHHHHHHHHhC
Q 021691 200 DDFP------YIVDTFDVIVASDCTFFK--EFHKDLARIIKFLLKKVGPSEALFFSPKR------GDSLDKFLEEIEGN 264 (309)
Q Consensus 200 ~~~~------~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~lLk~~G~~~~ii~~~~r------~~~~~~f~~~~~~~ 264 (309)
...+ ....+||.|+++.++|.. ...+.+++.+.++|+++| .++++.|.+ .++-..|-+.++..
T Consensus 88 ~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG--~L~~YGPF~~~G~~ts~SN~~FD~sLr~r 164 (204)
T PF06080_consen 88 PPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGG--LLFLYGPFNRDGKFTSESNAAFDASLRSR 164 (204)
T ss_pred CCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCC--EEEEeCCcccCCEeCCcHHHHHHHHHhcC
Confidence 2111 235689999999999884 567889999999999999 777877754 23445676666654
No 150
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.97 E-value=3.8e-09 Score=91.56 Aligned_cols=108 Identities=19% Similarity=0.204 Sum_probs=75.7
Q ss_pred HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCC-cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC
Q 021691 120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEA-LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN 198 (309)
Q Consensus 120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~-~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~ 198 (309)
..+...+++...+.+|.+|||+|||+|..+-.+|...+. .+|+++|.++.+++.+++|+...+.. +|.+...|..
T Consensus 58 P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~----nv~~~~gdg~ 133 (209)
T PF01135_consen 58 PSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID----NVEVVVGDGS 133 (209)
T ss_dssp HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH----SEEEEES-GG
T ss_pred HHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC----ceeEEEcchh
Confidence 334344555556889999999999999999998988664 47999999999999999999998873 5666665533
Q ss_pred CCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691 199 QDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 199 ~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G 239 (309)
... ....+||.|+....+.. +-..+.+.|++||
T Consensus 134 ~g~--~~~apfD~I~v~~a~~~------ip~~l~~qL~~gG 166 (209)
T PF01135_consen 134 EGW--PEEAPFDRIIVTAAVPE------IPEALLEQLKPGG 166 (209)
T ss_dssp GTT--GGG-SEEEEEESSBBSS--------HHHHHTEEEEE
T ss_pred hcc--ccCCCcCEEEEeeccch------HHHHHHHhcCCCc
Confidence 221 12468999999655432 2245667789999
No 151
>PRK01581 speE spermidine synthase; Validated
Probab=98.96 E-value=8.7e-09 Score=95.39 Aligned_cols=135 Identities=20% Similarity=0.174 Sum_probs=87.1
Q ss_pred CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHH---HhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691 134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNV---DANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD 210 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~---~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD 210 (309)
..++||+||||+|.....+++..+..+|+++|++++|++.++..- ..++......++++..-|.... .....++||
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~f-L~~~~~~YD 228 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEF-LSSPSSLYD 228 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHH-HHhcCCCcc
Confidence 467999999999998888777655679999999999999999621 1222222234566555433221 112346899
Q ss_pred EEEEcCCCCCcc------cHHHHHHHHHHHHhcCCCeEEEEEeecCC----chHHHHHHHHHhCCCeEEEEec
Q 021691 211 VIVASDCTFFKE------FHKDLARIIKFLLKKVGPSEALFFSPKRG----DSLDKFLEEIEGNHLHFSIIEN 273 (309)
Q Consensus 211 vIi~~d~ly~~~------~~~~ll~~l~~lLk~~G~~~~ii~~~~r~----~~~~~f~~~~~~~G~~~~~~~~ 273 (309)
+|++ |+..... .-..+++.+++.|+|+| . ++.....+ ..+..+.+.+++.|+.+.....
T Consensus 229 VIIv-Dl~DP~~~~~~~LyT~EFy~~~~~~LkPgG--V-~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t 297 (374)
T PRK01581 229 VIII-DFPDPATELLSTLYTSELFARIATFLTEDG--A-FVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHT 297 (374)
T ss_pred EEEE-cCCCccccchhhhhHHHHHHHHHHhcCCCc--E-EEEecCChhhhHHHHHHHHHHHHHhCCceEEEEE
Confidence 9998 5432111 12567899999999999 3 33332222 2224466778888887765433
No 152
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.96 E-value=1.3e-08 Score=93.42 Aligned_cols=107 Identities=17% Similarity=0.088 Sum_probs=73.0
Q ss_pred CCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC-CCCC--CCCc
Q 021691 134 RSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD-FPYI--VDTF 209 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~-~~~~--~~~f 209 (309)
++.+|||||||+|..+..+++... +.+|+++|+|++||+.+++++..... ..++.....|..... .... ....
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p---~~~v~~i~gD~~~~~~~~~~~~~~~~ 139 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP---QLEVHGICADFTQPLALPPEPAAGRR 139 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC---CceEEEEEEcccchhhhhcccccCCe
Confidence 568999999999999998888764 47899999999999999998775432 123444444443211 1110 1123
Q ss_pred cEEEEcCCCCC--cccHHHHHHHHHHHHhcCCCeEEEE
Q 021691 210 DVIVASDCTFF--KEFHKDLARIIKFLLKKVGPSEALF 245 (309)
Q Consensus 210 DvIi~~d~ly~--~~~~~~ll~~l~~lLk~~G~~~~ii 245 (309)
.++++...+++ .+....+++.+++.|+||| .+++
T Consensus 140 ~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG--~~li 175 (301)
T TIGR03438 140 LGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGG--GLLI 175 (301)
T ss_pred EEEEecccccCCCHHHHHHHHHHHHHhcCCCC--EEEE
Confidence 34444445554 4557789999999999999 4444
No 153
>PHA03412 putative methyltransferase; Provisional
Probab=98.95 E-value=5.1e-09 Score=91.46 Aligned_cols=94 Identities=15% Similarity=0.092 Sum_probs=66.5
Q ss_pred CCCeEEEeCCCCChhhHHHHHhc---CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691 134 RSKRVIELGSGYGLAGLVIAATT---EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD 210 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~---~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD 210 (309)
.+.+|||+|||+|.+++.+++.. +..+|+++|+++.+++.+++|+.. +.+...|.... ....+||
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~---------~~~~~~D~~~~---~~~~~FD 116 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPE---------ATWINADALTT---EFDTLFD 116 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccC---------CEEEEcchhcc---cccCCcc
Confidence 36799999999999999988763 245899999999999999987532 22222222211 1245899
Q ss_pred EEEEcCCCCCc------------ccHHHHHHHHHHHHhcCC
Q 021691 211 VIVASDCTFFK------------EFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 211 vIi~~d~ly~~------------~~~~~ll~~l~~lLk~~G 239 (309)
+||++.+++.. ..+..++....+++++|+
T Consensus 117 lIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~ 157 (241)
T PHA03412 117 MAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGT 157 (241)
T ss_pred EEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCE
Confidence 99998776631 124557888888766655
No 154
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.93 E-value=1.5e-08 Score=85.29 Aligned_cols=110 Identities=17% Similarity=0.216 Sum_probs=77.3
Q ss_pred cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCC--CCc
Q 021691 132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIV--DTF 209 (309)
Q Consensus 132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~--~~f 209 (309)
.+.|.+||||-||+|.+|+.++. .|+.+|+++|.+..++..+++|++.-+.. ..+.+..-|-. .-..... ++|
T Consensus 41 ~i~g~~~LDlFAGSGaLGlEAlS-RGA~~~~~vE~~~~a~~~l~~N~~~l~~~---~~~~~~~~da~-~~L~~~~~~~~F 115 (187)
T COG0742 41 EIEGARVLDLFAGSGALGLEALS-RGAARVVFVEKDRKAVKILKENLKALGLE---GEARVLRNDAL-RALKQLGTREPF 115 (187)
T ss_pred ccCCCEEEEecCCccHhHHHHHh-CCCceEEEEecCHHHHHHHHHHHHHhCCc---cceEEEeecHH-HHHHhcCCCCcc
Confidence 47899999999999999999555 58899999999999999999999887753 23333333221 1111122 359
Q ss_pred cEEEEcCCCCCcccHHHHHHHHH----HHHhcCCCeEEEEEeecC
Q 021691 210 DVIVASDCTFFKEFHKDLARIIK----FLLKKVGPSEALFFSPKR 250 (309)
Q Consensus 210 DvIi~~d~ly~~~~~~~ll~~l~----~lLk~~G~~~~ii~~~~r 250 (309)
|+|+. |+.|.....+.....+. .+|++++ ++++....
T Consensus 116 DlVfl-DPPy~~~l~~~~~~~~~~~~~~~L~~~~---~iv~E~~~ 156 (187)
T COG0742 116 DLVFL-DPPYAKGLLDKELALLLLEENGWLKPGA---LIVVEHDK 156 (187)
T ss_pred cEEEe-CCCCccchhhHHHHHHHHHhcCCcCCCc---EEEEEeCC
Confidence 99999 99999766644443333 6688888 55555444
No 155
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.91 E-value=1.6e-08 Score=91.28 Aligned_cols=109 Identities=19% Similarity=0.202 Sum_probs=73.3
Q ss_pred CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691 134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV 213 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi 213 (309)
.+++||+||||+|..+..+++..+..+|+++|+++++++.+++++...+......++++...|.... .....++||+|+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~-l~~~~~~yDvIi 150 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKF-LADTENTFDVII 150 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHH-HHhCCCCccEEE
Confidence 4569999999999988887776556799999999999999999875533222233454443222110 011246899999
Q ss_pred EcCCCCC---ccc--HHHHHHHHHHHHhcCCCeEEEEE
Q 021691 214 ASDCTFF---KEF--HKDLARIIKFLLKKVGPSEALFF 246 (309)
Q Consensus 214 ~~d~ly~---~~~--~~~ll~~l~~lLk~~G~~~~ii~ 246 (309)
+ |.... ... ...+++.++++|+++| .+++.
T Consensus 151 ~-D~~~~~~~~~~l~~~ef~~~~~~~L~pgG--~lv~~ 185 (270)
T TIGR00417 151 V-DSTDPVGPAETLFTKEFYELLKKALNEDG--IFVAQ 185 (270)
T ss_pred E-eCCCCCCcccchhHHHHHHHHHHHhCCCc--EEEEc
Confidence 8 43321 111 3577889999999999 44443
No 156
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.91 E-value=5.7e-09 Score=90.20 Aligned_cols=104 Identities=19% Similarity=0.287 Sum_probs=77.3
Q ss_pred eEEEeCCCCChhhHHHHHhcCC--cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC--CCCCCCCccEE
Q 021691 137 RVIELGSGYGLAGLVIAATTEA--LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD--FPYIVDTFDVI 212 (309)
Q Consensus 137 ~VLELG~GtG~~~l~la~~~~~--~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~--~~~~~~~fDvI 212 (309)
+|||+|||.|-....+.+..+. -+|.+.|.+|.+++..+++...+.. ++.+...|...+. .+...+++|+|
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~-----~~~afv~Dlt~~~~~~~~~~~svD~i 148 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDES-----RVEAFVWDLTSPSLKEPPEEGSVDII 148 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchh-----hhcccceeccchhccCCCCcCccceE
Confidence 7999999999888887776655 6899999999999999988766542 3333333433332 23346789999
Q ss_pred EEcCCCC--CcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 213 VASDCTF--FKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 213 i~~d~ly--~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
++--++- +++.+...++.+.++||||| .+++-+
T Consensus 149 t~IFvLSAi~pek~~~a~~nl~~llKPGG--~llfrD 183 (264)
T KOG2361|consen 149 TLIFVLSAIHPEKMQSVIKNLRTLLKPGG--SLLFRD 183 (264)
T ss_pred EEEEEEeccChHHHHHHHHHHHHHhCCCc--EEEEee
Confidence 8865443 36778999999999999999 455444
No 157
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.89 E-value=1.6e-08 Score=88.74 Aligned_cols=110 Identities=16% Similarity=0.037 Sum_probs=76.2
Q ss_pred eecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHH-HHHHHHhccCCCCCCceEE
Q 021691 114 CHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDY-IQRNVDANSGAFGGTTVKS 192 (309)
Q Consensus 114 ~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~-~~~n~~~n~~~~~~~~v~~ 192 (309)
+++.++..|...+......+.|++|||+|||||.++..+++. |+.+|+++|.++.++.. ++.+.+.- ..+..+++
T Consensus 55 ~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~--~~~~~ni~- 130 (228)
T TIGR00478 55 FVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVK--VLERTNIR- 130 (228)
T ss_pred hhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCee--EeecCCcc-
Confidence 378889999998887765678999999999999999998885 77899999999977765 33321100 01122333
Q ss_pred EEeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691 193 MTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 193 ~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G 239 (309)
.++|.+... .-..+|+++++ +..++..+..+|++ |
T Consensus 131 -~~~~~~~~~--d~~~~DvsfiS--------~~~~l~~i~~~l~~-~ 165 (228)
T TIGR00478 131 -YVTPADIFP--DFATFDVSFIS--------LISILPELDLLLNP-N 165 (228)
T ss_pred -cCCHhHcCC--CceeeeEEEee--------hHhHHHHHHHHhCc-C
Confidence 445554321 12367877775 23357888999998 6
No 158
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=9.6e-08 Score=79.24 Aligned_cols=141 Identities=16% Similarity=0.161 Sum_probs=96.4
Q ss_pred cccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691 116 WPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT 194 (309)
Q Consensus 116 W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ 194 (309)
-++-+.=+.++.++. .+-+||||||+|.++-.+++..+ ...+.++|+||.+++...+.+..|+.. +.+..
T Consensus 29 lDaLekd~~eL~~~~----~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~-----~~~V~ 99 (209)
T KOG3191|consen 29 LDALEKDAAELKGHN----PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH-----IDVVR 99 (209)
T ss_pred HHHHHHHHHHHhhcC----ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc-----cceee
Confidence 344444455554432 56899999999999999888764 457899999999999999999999863 33333
Q ss_pred eeCCCCCCCCCCCCccEEEEcCCCCCc----------------------ccHHHHHHHHHHHHhcCCCeEEEEEeecCCc
Q 021691 195 LHWNQDDFPYIVDTFDVIVASDCTFFK----------------------EFHKDLARIIKFLLKKVGPSEALFFSPKRGD 252 (309)
Q Consensus 195 l~w~~~~~~~~~~~fDvIi~~d~ly~~----------------------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~ 252 (309)
-|....- ..++.|+++-+.+ |-+ ...+.++..+..+|.|.| .+++ -..+.+
T Consensus 100 tdl~~~l---~~~~VDvLvfNPP-YVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~G--v~Yl-v~~~~N 172 (209)
T KOG3191|consen 100 TDLLSGL---RNESVDVLVFNPP-YVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRG--VFYL-VALRAN 172 (209)
T ss_pred hhHHhhh---ccCCccEEEECCC-cCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCc--eEEe-eehhhc
Confidence 3222111 1267898888554 321 125668888889999999 3333 333445
Q ss_pred hHHHHHHHHHhCCCeEEEEe
Q 021691 253 SLDKFLEEIEGNHLHFSIIE 272 (309)
Q Consensus 253 ~~~~f~~~~~~~G~~~~~~~ 272 (309)
..++.++.++..||.+....
T Consensus 173 ~p~ei~k~l~~~g~~~~~~~ 192 (209)
T KOG3191|consen 173 KPKEILKILEKKGYGVRIAM 192 (209)
T ss_pred CHHHHHHHHhhcccceeEEE
Confidence 55778888999999876544
No 159
>PLN02366 spermidine synthase
Probab=98.87 E-value=2.9e-08 Score=90.98 Aligned_cols=129 Identities=16% Similarity=0.097 Sum_probs=84.4
Q ss_pred CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691 134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV 213 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi 213 (309)
..++||+||||.|.....+++..+..+|+++|+++.+++.+++.+...+......++++..-|..........++||+|+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 46899999999999999888874557999999999999999998764322223456666555421111111246799999
Q ss_pred EcCCCCCcc-----cHHHHHHHHHHHHhcCCCeEEEEEee--c-CCchHHHHHHHHHhCC
Q 021691 214 ASDCTFFKE-----FHKDLARIIKFLLKKVGPSEALFFSP--K-RGDSLDKFLEEIEGNH 265 (309)
Q Consensus 214 ~~d~ly~~~-----~~~~ll~~l~~lLk~~G~~~~ii~~~--~-r~~~~~~f~~~~~~~G 265 (309)
+ |...... .-..+++.+++.|+|+| .++..+. . ....+..+.+.+++.+
T Consensus 171 ~-D~~dp~~~~~~L~t~ef~~~~~~~L~pgG--vlv~q~~s~~~~~~~~~~i~~tl~~~F 227 (308)
T PLN02366 171 V-DSSDPVGPAQELFEKPFFESVARALRPGG--VVCTQAESMWLHMDLIEDLIAICRETF 227 (308)
T ss_pred E-cCCCCCCchhhhhHHHHHHHHHHhcCCCc--EEEECcCCcccchHHHHHHHHHHHHHC
Confidence 8 4422111 12467899999999999 3333221 1 2334455666676664
No 160
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.87 E-value=1.2e-08 Score=95.57 Aligned_cols=152 Identities=16% Similarity=0.110 Sum_probs=94.4
Q ss_pred cccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEe
Q 021691 116 WPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTL 195 (309)
Q Consensus 116 W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l 195 (309)
+.....|.+++.......++ +||||.||+|.+|+.+|.. +.+|+|+|+++++++.|++|+..|++. ++++...
T Consensus 179 ~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~N~i~----n~~f~~~ 251 (352)
T PF05958_consen 179 PEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKLNGID----NVEFIRG 251 (352)
T ss_dssp HHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHHTT------SEEEEE-
T ss_pred HHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHHcCCC----cceEEEe
Confidence 45566777777776555555 8999999999999999886 679999999999999999999999984 5665544
Q ss_pred eCCCCC--------C------CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHH
Q 021691 196 HWNQDD--------F------PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEI 261 (309)
Q Consensus 196 ~w~~~~--------~------~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~ 261 (309)
+-++.. . ......+|+|+. |+.-..-. +.+++.+.+ . . .+++.++ .+.|+.+-+..+
T Consensus 252 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vil-DPPR~G~~-~~~~~~~~~---~-~--~ivYvSC-nP~tlaRDl~~L 322 (352)
T PF05958_consen 252 DAEDFAKALAKAREFNRLKGIDLKSFKFDAVIL-DPPRAGLD-EKVIELIKK---L-K--RIVYVSC-NPATLARDLKIL 322 (352)
T ss_dssp -SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE----TT-SC-HHHHHHHHH---S-S--EEEEEES--HHHHHHHHHHH
T ss_pred eccchhHHHHhhHHHHhhhhhhhhhcCCCEEEE-cCCCCCch-HHHHHHHhc---C-C--eEEEEEC-CHHHHHHHHHHH
Confidence 321100 0 001236899988 55543222 334444432 2 2 4444443 557777777777
Q ss_pred HhCCCeEEEEeccCchhhhhhhc
Q 021691 262 EGNHLHFSIIENYNAEIWKRHQM 284 (309)
Q Consensus 262 ~~~G~~~~~~~~~~~~~~~~~~~ 284 (309)
.+ |++++.+..+|.-++..|-+
T Consensus 323 ~~-~y~~~~v~~~DmFP~T~HvE 344 (352)
T PF05958_consen 323 KE-GYKLEKVQPVDMFPQTHHVE 344 (352)
T ss_dssp HC-CEEEEEEEEE-SSTTSS--E
T ss_pred hh-cCEEEEEEEeecCCCCCcEE
Confidence 65 89999888888766665543
No 161
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.87 E-value=2.6e-08 Score=83.55 Aligned_cols=86 Identities=14% Similarity=0.106 Sum_probs=62.2
Q ss_pred HHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCC
Q 021691 125 FSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPY 204 (309)
Q Consensus 125 ~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~ 204 (309)
.+.......++.+|||+|||+|.++..+++. +.+|+++|.++.+++.+++++... .++++...|..... .
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~------~~v~ii~~D~~~~~--~ 73 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAA------DNLTVIHGDALKFD--L 73 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccC------CCEEEEECchhcCC--c
Confidence 4444445567889999999999999998887 579999999999999999887531 24555555443322 2
Q ss_pred CCCCccEEEEcCCCCCc
Q 021691 205 IVDTFDVIVASDCTFFK 221 (309)
Q Consensus 205 ~~~~fDvIi~~d~ly~~ 221 (309)
...+||.|+++ +.|+.
T Consensus 74 ~~~~~d~vi~n-~Py~~ 89 (169)
T smart00650 74 PKLQPYKVVGN-LPYNI 89 (169)
T ss_pred cccCCCEEEEC-CCccc
Confidence 23469999985 55553
No 162
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.87 E-value=2.3e-08 Score=86.48 Aligned_cols=117 Identities=22% Similarity=0.323 Sum_probs=82.2
Q ss_pred cCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCC-------------CCceEE----
Q 021691 130 ADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFG-------------GTTVKS---- 192 (309)
Q Consensus 130 ~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~-------------~~~v~~---- 192 (309)
.+.+.++.+||+||-+|.+++.+|+.+++..|+|+|+++..|+.|+++++.-.-... ...+..
T Consensus 54 ~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a 133 (288)
T KOG2899|consen 54 KDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA 133 (288)
T ss_pred ccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccc
Confidence 466788999999999999999999999999999999999999999999874321100 000000
Q ss_pred ---EEee-----CCC--------C-CCCCCCCCccEEEEcCCC------CCcccHHHHHHHHHHHHhcCCCeEEEEEeec
Q 021691 193 ---MTLH-----WNQ--------D-DFPYIVDTFDVIVASDCT------FFKEFHKDLARIIKFLLKKVGPSEALFFSPK 249 (309)
Q Consensus 193 ---~~l~-----w~~--------~-~~~~~~~~fDvIi~~d~l------y~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~ 249 (309)
...+ |.. . -.......||+|+|-.+. ++.+-+..+++.+.++|.||| +++..|.
T Consensus 134 ~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgG---iLvvEPQ 210 (288)
T KOG2899|consen 134 DRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGG---ILVVEPQ 210 (288)
T ss_pred cccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCc---EEEEcCC
Confidence 0000 000 0 001234689999996654 335668889999999999999 5666653
No 163
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.87 E-value=2.3e-08 Score=90.12 Aligned_cols=104 Identities=19% Similarity=0.311 Sum_probs=79.1
Q ss_pred hhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCC
Q 021691 127 LSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIV 206 (309)
Q Consensus 127 ~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~ 206 (309)
+.+...|.|+.|||+|||+|+++...|. .|+++|++++ ..+|.+.+++-++.|.+. .++.+...+.++-+ +.
T Consensus 170 l~N~sDF~~kiVlDVGaGSGILS~FAaq-AGA~~vYAvE-AS~MAqyA~~Lv~~N~~~---~rItVI~GKiEdie---LP 241 (517)
T KOG1500|consen 170 LENHSDFQDKIVLDVGAGSGILSFFAAQ-AGAKKVYAVE-ASEMAQYARKLVASNNLA---DRITVIPGKIEDIE---LP 241 (517)
T ss_pred HhcccccCCcEEEEecCCccHHHHHHHH-hCcceEEEEe-hhHHHHHHHHHHhcCCcc---ceEEEccCcccccc---Cc
Confidence 3455678999999999999999998554 6899999999 567999999999999774 56777666544333 45
Q ss_pred CCccEEEEcC---CCCCcccHHHHHHHHHHHHhcCC
Q 021691 207 DTFDVIVASD---CTFFKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 207 ~~fDvIi~~d---~ly~~~~~~~ll~~l~~lLk~~G 239 (309)
++.|+||+-. .+++....+..+. .++.|+|+|
T Consensus 242 Ek~DviISEPMG~mL~NERMLEsYl~-Ark~l~P~G 276 (517)
T KOG1500|consen 242 EKVDVIISEPMGYMLVNERMLESYLH-ARKWLKPNG 276 (517)
T ss_pred hhccEEEeccchhhhhhHHHHHHHHH-HHhhcCCCC
Confidence 6899999954 3455555555554 359999999
No 164
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.86 E-value=1.6e-08 Score=95.47 Aligned_cols=95 Identities=23% Similarity=0.211 Sum_probs=71.5
Q ss_pred CCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEE
Q 021691 135 SKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVA 214 (309)
Q Consensus 135 g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~ 214 (309)
+.+|||++||+|..|+.+|+..++.+|+++|+++.+++.+++|++.|++. .+.+...|..... .. ..+||+|+.
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~----~~~v~~~Da~~~l-~~-~~~fD~V~l 131 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE----NEKVFNKDANALL-HE-ERKFDVVDI 131 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----ceEEEhhhHHHHH-hh-cCCCCEEEE
Confidence 46899999999999999988777779999999999999999999999874 2333333322111 11 356999999
Q ss_pred cCCCCCcccHHHHHHHHHHHHhcCC
Q 021691 215 SDCTFFKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 215 ~d~ly~~~~~~~ll~~l~~lLk~~G 239 (309)
|++ .....++....+.++++|
T Consensus 132 -DP~---Gs~~~~l~~al~~~~~~g 152 (382)
T PRK04338 132 -DPF---GSPAPFLDSAIRSVKRGG 152 (382)
T ss_pred -CCC---CCcHHHHHHHHHHhcCCC
Confidence 764 344567777666678888
No 165
>PRK03612 spermidine synthase; Provisional
Probab=98.84 E-value=2.9e-08 Score=97.56 Aligned_cols=132 Identities=21% Similarity=0.251 Sum_probs=86.6
Q ss_pred CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHh---ccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691 134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDA---NSGAFGGTTVKSMTLHWNQDDFPYIVDTFD 210 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~---n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD 210 (309)
++++|||+|||+|..+..+++..+..+|+++|+++++++.++++... |+......++++..-|-... .....++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~-l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNW-LRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHH-HHhCCCCCC
Confidence 56899999999999998887753337999999999999999985422 22112234555554432211 112246899
Q ss_pred EEEEcCCCCCc-c-----cHHHHHHHHHHHHhcCCCeEEEEEee---cCCchHHHHHHHHHhCCCeEE
Q 021691 211 VIVASDCTFFK-E-----FHKDLARIIKFLLKKVGPSEALFFSP---KRGDSLDKFLEEIEGNHLHFS 269 (309)
Q Consensus 211 vIi~~d~ly~~-~-----~~~~ll~~l~~lLk~~G~~~~ii~~~---~r~~~~~~f~~~~~~~G~~~~ 269 (309)
+|++ |+.... . .-..+++.+++.|+|+| .+++... .+...+....+.+++.||.+.
T Consensus 376 vIi~-D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG--~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~ 440 (521)
T PRK03612 376 VIIV-DLPDPSNPALGKLYSVEFYRLLKRRLAPDG--LLVVQSTSPYFAPKAFWSIEATLEAAGLATT 440 (521)
T ss_pred EEEE-eCCCCCCcchhccchHHHHHHHHHhcCCCe--EEEEecCCcccchHHHHHHHHHHHHcCCEEE
Confidence 9999 433221 1 12357889999999999 4444332 124455667788889999543
No 166
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.81 E-value=2.2e-07 Score=81.87 Aligned_cols=120 Identities=20% Similarity=0.216 Sum_probs=88.7
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI 212 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI 212 (309)
....++||||+|.|-++..++.. -.+|++|+.|+.|...+++ .|.. .....+|.+. +.+||+|
T Consensus 93 ~~~~~lLDlGAGdG~VT~~l~~~--f~~v~aTE~S~~Mr~rL~~----kg~~------vl~~~~w~~~-----~~~fDvI 155 (265)
T PF05219_consen 93 WKDKSLLDLGAGDGEVTERLAPL--FKEVYATEASPPMRWRLSK----KGFT------VLDIDDWQQT-----DFKFDVI 155 (265)
T ss_pred ccCCceEEecCCCcHHHHHHHhh--cceEEeecCCHHHHHHHHh----CCCe------EEehhhhhcc-----CCceEEE
Confidence 35678999999999999999887 4589999999999766654 3442 2233446532 3579999
Q ss_pred EEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe--ecC------------C--------ch----HHHHHHHHHhCCC
Q 021691 213 VASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS--PKR------------G--------DS----LDKFLEEIEGNHL 266 (309)
Q Consensus 213 i~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~--~~r------------~--------~~----~~~f~~~~~~~G~ 266 (309)
.|.+++-....+..+++.+++.|+|+| .++++. |.+ + .+ ...|.+.++.+||
T Consensus 156 scLNvLDRc~~P~~LL~~i~~~l~p~G--~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF 233 (265)
T PF05219_consen 156 SCLNVLDRCDRPLTLLRDIRRALKPNG--RLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGF 233 (265)
T ss_pred eehhhhhccCCHHHHHHHHHHHhCCCC--EEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCC
Confidence 999999888999999999999999999 444332 111 1 12 2356688899999
Q ss_pred eEEEE
Q 021691 267 HFSII 271 (309)
Q Consensus 267 ~~~~~ 271 (309)
+++..
T Consensus 234 ~v~~~ 238 (265)
T PF05219_consen 234 EVERW 238 (265)
T ss_pred EEEEE
Confidence 98654
No 167
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.80 E-value=8.2e-08 Score=87.93 Aligned_cols=135 Identities=17% Similarity=0.145 Sum_probs=102.6
Q ss_pred HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691 120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ 199 (309)
Q Consensus 120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~ 199 (309)
-.||+.+.+.....+|..|||=-||||.+.+.+... +.+|+|+|++..|++-++.|++.-++. ...+... |+.
T Consensus 183 P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~----~~~~~~~-~Da 255 (347)
T COG1041 183 PRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIE----DYPVLKV-LDA 255 (347)
T ss_pred HHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcC----ceeEEEe-ccc
Confidence 568888888888899999999999999998885443 679999999999999999999988753 2212111 233
Q ss_pred CCCCCCCCCccEEEEcCCCCCcc----------cHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEE
Q 021691 200 DDFPYIVDTFDVIVASDCTFFKE----------FHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFS 269 (309)
Q Consensus 200 ~~~~~~~~~fDvIi~~d~ly~~~----------~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~ 269 (309)
...+....+||.|++ |+.|... ....+++++.++|+++| .+++.++.. ....+.+.||.+.
T Consensus 256 ~~lpl~~~~vdaIat-DPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG--~~vf~~p~~------~~~~~~~~~f~v~ 326 (347)
T COG1041 256 TNLPLRDNSVDAIAT-DPPYGRSTKIKGEGLDELYEEALESASEVLKPGG--RIVFAAPRD------PRHELEELGFKVL 326 (347)
T ss_pred ccCCCCCCccceEEe-cCCCCcccccccccHHHHHHHHHHHHHHHhhcCc--EEEEecCCc------chhhHhhcCceEE
Confidence 344444457999988 8888743 37788999999999999 666666622 4467778899875
Q ss_pred E
Q 021691 270 I 270 (309)
Q Consensus 270 ~ 270 (309)
.
T Consensus 327 ~ 327 (347)
T COG1041 327 G 327 (347)
T ss_pred E
Confidence 4
No 168
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.79 E-value=1.2e-07 Score=80.47 Aligned_cols=125 Identities=20% Similarity=0.326 Sum_probs=91.1
Q ss_pred eEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEcC
Q 021691 137 RVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASD 216 (309)
Q Consensus 137 ~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d 216 (309)
+++|+|+|.|++|+.+|-..|..+|+.+|....=+..++.-+..-++. ++.+...+.++ .....+||+|++-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~----nv~v~~~R~E~---~~~~~~fd~v~aRA 123 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS----NVEVINGRAEE---PEYRESFDVVTARA 123 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S----SEEEEES-HHH---TTTTT-EEEEEEES
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC----CEEEEEeeecc---cccCCCccEEEeeh
Confidence 899999999999999999999999999999998888888888877773 56666665544 33467899999953
Q ss_pred CCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC-CchHHHHHHHHHhCCCeEEEEecc
Q 021691 217 CTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR-GDSLDKFLEEIEGNHLHFSIIENY 274 (309)
Q Consensus 217 ~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r-~~~~~~f~~~~~~~G~~~~~~~~~ 274 (309)
+ .....++.....+++++| .++++-... .+..+.....+...+.....+..+
T Consensus 124 v----~~l~~l~~~~~~~l~~~G--~~l~~KG~~~~~El~~~~~~~~~~~~~~~~v~~~ 176 (184)
T PF02527_consen 124 V----APLDKLLELARPLLKPGG--RLLAYKGPDAEEELEEAKKAWKKLGLKVLSVPEF 176 (184)
T ss_dssp S----SSHHHHHHHHGGGEEEEE--EEEEEESS--HHHHHTHHHHHHCCCEEEEEEEEE
T ss_pred h----cCHHHHHHHHHHhcCCCC--EEEEEcCCChHHHHHHHHhHHHHhCCEEeeeccc
Confidence 3 356788999999999999 444443222 233445566677777777666654
No 169
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.75 E-value=6e-08 Score=83.34 Aligned_cols=98 Identities=21% Similarity=0.208 Sum_probs=69.1
Q ss_pred cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691 132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV 211 (309)
Q Consensus 132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv 211 (309)
..+|..|+|+.||.|.+++.+|+..+++.|+++|.||.+++.+++|++.|++. ..+.+...|..... . ...||-
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~---~~i~~~~~D~~~~~--~-~~~~dr 172 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVE---NRIEVINGDAREFL--P-EGKFDR 172 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-T---TTEEEEES-GGG------TT-EEE
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCC---CeEEEEcCCHHHhc--C-ccccCE
Confidence 45789999999999999999999667889999999999999999999999984 45666666544322 1 578999
Q ss_pred EEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691 212 IVASDCTFFKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 212 Ii~~d~ly~~~~~~~ll~~l~~lLk~~G 239 (309)
|++..+-... .++..+..+++++|
T Consensus 173 vim~lp~~~~----~fl~~~~~~~~~~g 196 (200)
T PF02475_consen 173 VIMNLPESSL----EFLDAALSLLKEGG 196 (200)
T ss_dssp EEE--TSSGG----GGHHHHHHHEEEEE
T ss_pred EEECChHHHH----HHHHHHHHHhcCCc
Confidence 9996554333 35666778888776
No 170
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.75 E-value=3e-08 Score=88.00 Aligned_cols=108 Identities=17% Similarity=0.068 Sum_probs=81.7
Q ss_pred CcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-----C
Q 021691 131 DMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP-----Y 204 (309)
Q Consensus 131 ~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~-----~ 204 (309)
...+.++|||||+++|.-++.+|...+ .++|+.+|.+++..+.++.+++..++. .+|++...+..+.... .
T Consensus 76 ~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~---~~I~~~~G~a~e~L~~l~~~~~ 152 (247)
T PLN02589 76 KLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA---HKIDFREGPALPVLDQMIEDGK 152 (247)
T ss_pred HHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC---CceEEEeccHHHHHHHHHhccc
Confidence 334678999999999999999988764 569999999999999999999999874 4666655443221100 0
Q ss_pred CCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 205 IVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 205 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
..++||+|+. |. +...+...++.+.++|++|| +++++
T Consensus 153 ~~~~fD~iFi-Da--dK~~Y~~y~~~~l~ll~~GG---viv~D 189 (247)
T PLN02589 153 YHGTFDFIFV-DA--DKDNYINYHKRLIDLVKVGG---VIGYD 189 (247)
T ss_pred cCCcccEEEe-cC--CHHHhHHHHHHHHHhcCCCe---EEEEc
Confidence 1368999999 43 36677888888899999999 55554
No 171
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.73 E-value=7.7e-08 Score=92.48 Aligned_cols=101 Identities=22% Similarity=0.272 Sum_probs=73.8
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhc----CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCC
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATT----EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDT 208 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~----~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~ 208 (309)
.+++.|+|+|||+|.++..+++.. ++.+|++++.|+.++..+++.+..|+.. .+|++..-|..+-.. ..+
T Consensus 185 ~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~---~~V~vi~~d~r~v~l---pek 258 (448)
T PF05185_consen 185 SKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWG---DKVTVIHGDMREVEL---PEK 258 (448)
T ss_dssp ETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTT---TTEEEEES-TTTSCH---SS-
T ss_pred ccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCC---CeEEEEeCcccCCCC---CCc
Confidence 357899999999999988765542 3579999999999999998888889883 568887776554443 348
Q ss_pred ccEEEEcC--CCCCcccHHHHHHHHHHHHhcCC
Q 021691 209 FDVIVASD--CTFFKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 209 fDvIi~~d--~ly~~~~~~~ll~~l~~lLk~~G 239 (309)
.|+||+-- .+-..+..+..+....++|+|+|
T Consensus 259 vDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~G 291 (448)
T PF05185_consen 259 VDIIVSELLGSFGDNELSPECLDAADRFLKPDG 291 (448)
T ss_dssp EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEE
T ss_pred eeEEEEeccCCccccccCHHHHHHHHhhcCCCC
Confidence 99999822 22334566777889999999998
No 172
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=5e-08 Score=77.97 Aligned_cols=84 Identities=15% Similarity=0.177 Sum_probs=62.6
Q ss_pred CcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCC
Q 021691 129 HADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDT 208 (309)
Q Consensus 129 ~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~ 208 (309)
.-..+.|+.++|||||+|.+++. +...++..|+|+|++|++++...+|++...++ +.+.+.+...... ..+.
T Consensus 43 TygdiEgkkl~DLgcgcGmLs~a-~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq-----idlLqcdildle~--~~g~ 114 (185)
T KOG3420|consen 43 TYGDIEGKKLKDLGCGCGMLSIA-FSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ-----IDLLQCDILDLEL--KGGI 114 (185)
T ss_pred hhccccCcchhhhcCchhhhHHH-hhcCCCceEEeeecCHHHHHHHhhchHHhhhh-----hheeeeeccchhc--cCCe
Confidence 34568999999999999999976 45567789999999999999999999887663 2333333332222 2378
Q ss_pred ccEEEEcCCCCC
Q 021691 209 FDVIVASDCTFF 220 (309)
Q Consensus 209 fDvIi~~d~ly~ 220 (309)
||.++.+.++--
T Consensus 115 fDtaviNppFGT 126 (185)
T KOG3420|consen 115 FDTAVINPPFGT 126 (185)
T ss_pred EeeEEecCCCCc
Confidence 999999666543
No 173
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.72 E-value=1.4e-07 Score=83.65 Aligned_cols=105 Identities=21% Similarity=0.191 Sum_probs=81.0
Q ss_pred hhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCC
Q 021691 127 LSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIV 206 (309)
Q Consensus 127 ~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~ 206 (309)
......-+.++|+|||+|+|..+..+++.+|..+++..|. |.+++.+++ ..+|++...|+- +. .+
T Consensus 93 ~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----------~~rv~~~~gd~f-~~--~P- 157 (241)
T PF00891_consen 93 LEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----------ADRVEFVPGDFF-DP--LP- 157 (241)
T ss_dssp HHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----------TTTEEEEES-TT-TC--CS-
T ss_pred hccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----------ccccccccccHH-hh--hc-
Confidence 3333444567999999999999999999999999999995 999988887 246778777765 22 22
Q ss_pred CCccEEEEcCCCCCc--ccHHHHHHHHHHHHhcC--CCeEEEEEeec
Q 021691 207 DTFDVIVASDCTFFK--EFHKDLARIIKFLLKKV--GPSEALFFSPK 249 (309)
Q Consensus 207 ~~fDvIi~~d~ly~~--~~~~~ll~~l~~lLk~~--G~~~~ii~~~~ 249 (309)
. +|+|+...++|+. +....+++.+++.|+|| | ++++....
T Consensus 158 ~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g--~llI~e~~ 201 (241)
T PF00891_consen 158 V-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDG--RLLIIEMV 201 (241)
T ss_dssp S-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTE--EEEEEEEE
T ss_pred c-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCC--eEEEEeec
Confidence 2 9999999999874 45667899999999998 7 67776643
No 174
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.70 E-value=1e-07 Score=86.86 Aligned_cols=92 Identities=16% Similarity=0.178 Sum_probs=68.4
Q ss_pred HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691 120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ 199 (309)
Q Consensus 120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~ 199 (309)
..+.+.+.......++.+|||+|||+|.++..+++. +.+|+++|+++.+++.+++++..++. ..++++...|...
T Consensus 22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~~---~~~v~ii~~Dal~ 96 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSPL---ASKLEVIEGDALK 96 (294)
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcCC---CCcEEEEECCHhh
Confidence 344555666566678899999999999999998886 56899999999999999999887653 2356666665543
Q ss_pred CCCCCCCCCccEEEEcCCCCC
Q 021691 200 DDFPYIVDTFDVIVASDCTFF 220 (309)
Q Consensus 200 ~~~~~~~~~fDvIi~~d~ly~ 220 (309)
.. ...||+|+++-+.+.
T Consensus 97 ~~----~~~~d~VvaNlPY~I 113 (294)
T PTZ00338 97 TE----FPYFDVCVANVPYQI 113 (294)
T ss_pred hc----ccccCEEEecCCccc
Confidence 22 236899998555443
No 175
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.70 E-value=1.1e-06 Score=76.68 Aligned_cols=148 Identities=18% Similarity=0.125 Sum_probs=96.7
Q ss_pred eecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEE
Q 021691 114 CHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSM 193 (309)
Q Consensus 114 ~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~ 193 (309)
|+++.+..=+.|+.++. ...||+||=+| --=+.|+++|....+++|+.+|+++.+++.+++.++..++ .+++.
T Consensus 25 ~T~eT~~~Ra~~~~~~g-dL~gk~il~lG-DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl-----~i~~~ 97 (243)
T PF01861_consen 25 ATPETTLRRAALMAERG-DLEGKRILFLG-DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL-----PIEAV 97 (243)
T ss_dssp B-HHHHHHHHHHHHHTT--STT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-------EEEE
T ss_pred ccHHHHHHHHHHHHhcC-cccCCEEEEEc-CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC-----ceEEE
Confidence 48888888888888874 45799999998 3457788888877788999999999999999999999988 37888
Q ss_pred EeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee-cCCchH---HHHHHHHHhCCCeEE
Q 021691 194 TLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP-KRGDSL---DKFLEEIEGNHLHFS 269 (309)
Q Consensus 194 ~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~-~r~~~~---~~f~~~~~~~G~~~~ 269 (309)
..|......+...++||+++. |+.|-.+.+..++..-...|+..|. ..+++. .+..+. .++.+.+.+.|+.++
T Consensus 98 ~~DlR~~LP~~~~~~fD~f~T-DPPyT~~G~~LFlsRgi~~Lk~~g~--~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~ 174 (243)
T PF01861_consen 98 HYDLRDPLPEELRGKFDVFFT-DPPYTPEGLKLFLSRGIEALKGEGC--AGYFGFTHKEASPDKWLEVQRFLLEMGLVIT 174 (243)
T ss_dssp ---TTS---TTTSS-BSEEEE----SSHHHHHHHHHHHHHTB-STT---EEEEEE-TTT--HHHHHHHHHHHHTS--EEE
T ss_pred EecccccCCHHHhcCCCEEEe-CCCCCHHHHHHHHHHHHHHhCCCCc--eEEEEEecCcCcHHHHHHHHHHHHHCCcCHH
Confidence 887776655556789999999 9999999999999988889987663 333333 233233 356667778999887
Q ss_pred EE
Q 021691 270 II 271 (309)
Q Consensus 270 ~~ 271 (309)
.+
T Consensus 175 di 176 (243)
T PF01861_consen 175 DI 176 (243)
T ss_dssp EE
T ss_pred HH
Confidence 64
No 176
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.69 E-value=2.1e-07 Score=85.74 Aligned_cols=136 Identities=16% Similarity=0.220 Sum_probs=91.3
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI 212 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI 212 (309)
..|.+|+|+-||.|.+++.+|+. +..+|+++|+||.+++.+++|+++|+.. ..+.....|-.... ...+.||-|
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~-g~~~V~A~diNP~A~~~L~eNi~LN~v~---~~v~~i~gD~rev~--~~~~~aDrI 260 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKK-GRPKVYAIDINPDAVEYLKENIRLNKVE---GRVEPILGDAREVA--PELGVADRI 260 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhc-CCceEEEEecCHHHHHHHHHHHHhcCcc---ceeeEEeccHHHhh--hccccCCEE
Confidence 35899999999999999998886 4445999999999999999999999984 33555555433221 112679999
Q ss_pred EEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe--ecCC---chHHHHHHHHHhCCCeEE-----EEeccCchhhh
Q 021691 213 VASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS--PKRG---DSLDKFLEEIEGNHLHFS-----IIENYNAEIWK 280 (309)
Q Consensus 213 i~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~--~~r~---~~~~~f~~~~~~~G~~~~-----~~~~~~~~~~~ 280 (309)
++..+.. -..++....++++++| .+.+.. +... .....+...+.+.|.+++ .+..|.+.+|+
T Consensus 261 im~~p~~----a~~fl~~A~~~~k~~g--~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~~v~~~r~VksysP~v~h 332 (341)
T COG2520 261 IMGLPKS----AHEFLPLALELLKDGG--IIHYYEFVPEDDIEERPEKRIKSAARKGGYKVEVLKVRRVKSYSPGVYH 332 (341)
T ss_pred EeCCCCc----chhhHHHHHHHhhcCc--EEEEEeccchhhcccchHHHHHHHHhhccCcceEEEEEEecccCCCeeE
Confidence 9975442 3456667777777787 332222 2221 133555666666665333 35556666664
No 177
>PRK04148 hypothetical protein; Provisional
Probab=98.67 E-value=1.6e-07 Score=75.06 Aligned_cols=99 Identities=19% Similarity=0.267 Sum_probs=66.8
Q ss_pred HHHHHHhhCcCcCCCCeEEEeCCCCCh-hhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691 121 VLAFFSLSHADMFRSKRVIELGSGYGL-AGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ 199 (309)
Q Consensus 121 ~La~~l~~~~~~~~g~~VLELG~GtG~-~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~ 199 (309)
.+++|+..+....++++|||+|||+|. ++..|++. +.+|+++|+++.+++.++.+ +. .+..-|+-+
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~----~~-------~~v~dDlf~ 69 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL----GL-------NAFVDDLFN 69 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh----CC-------eEEECcCCC
Confidence 467787776655577899999999996 88888765 57999999999998888765 22 344444443
Q ss_pred CCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691 200 DDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 200 ~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G 239 (309)
.+. ..-..+|+|.+.-+ .+.+...+.++-+.-|
T Consensus 70 p~~-~~y~~a~liysirp------p~el~~~~~~la~~~~ 102 (134)
T PRK04148 70 PNL-EIYKNAKLIYSIRP------PRDLQPFILELAKKIN 102 (134)
T ss_pred CCH-HHHhcCCEEEEeCC------CHHHHHHHHHHHHHcC
Confidence 322 12356788877433 3455555555555544
No 178
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.67 E-value=1.7e-07 Score=84.04 Aligned_cols=89 Identities=18% Similarity=0.182 Sum_probs=66.0
Q ss_pred HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691 120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ 199 (309)
Q Consensus 120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~ 199 (309)
..+++.+.+.....++.+|||+|||+|.++..+++. +.+|+++|+++.+++.+++++.. . .++.+...|...
T Consensus 15 ~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~--~----~~v~ii~~D~~~ 86 (258)
T PRK14896 15 DRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA--A----GNVEIIEGDALK 86 (258)
T ss_pred HHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc--C----CCEEEEEecccc
Confidence 445556666666678899999999999999999887 56899999999999999988753 1 245555555433
Q ss_pred CCCCCCCCCccEEEEcCCCCC
Q 021691 200 DDFPYIVDTFDVIVASDCTFF 220 (309)
Q Consensus 200 ~~~~~~~~~fDvIi~~d~ly~ 220 (309)
.. ...||.|+++.+.+.
T Consensus 87 ~~----~~~~d~Vv~NlPy~i 103 (258)
T PRK14896 87 VD----LPEFNKVVSNLPYQI 103 (258)
T ss_pred CC----chhceEEEEcCCccc
Confidence 22 135899999766544
No 179
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.67 E-value=9.9e-08 Score=86.28 Aligned_cols=89 Identities=11% Similarity=0.025 Sum_probs=63.9
Q ss_pred HHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCC
Q 021691 121 VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQD 200 (309)
Q Consensus 121 ~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~ 200 (309)
.+++.+.......++.+|||+|||+|.++..+++.. .+|+++|.+++|++.+++++.. .++.+...|+...
T Consensus 29 ~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~~-------~~v~~i~~D~~~~ 99 (272)
T PRK00274 29 NILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFAE-------DNLTIIEGDALKV 99 (272)
T ss_pred HHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhcc-------CceEEEEChhhcC
Confidence 345556665566788899999999999999998873 4999999999999999887632 2456666665543
Q ss_pred CCCCCCCCccEEEEcCCCCCc
Q 021691 201 DFPYIVDTFDVIVASDCTFFK 221 (309)
Q Consensus 201 ~~~~~~~~fDvIi~~d~ly~~ 221 (309)
..+. ..+|.|+++.+ |+.
T Consensus 100 ~~~~--~~~~~vv~NlP-Y~i 117 (272)
T PRK00274 100 DLSE--LQPLKVVANLP-YNI 117 (272)
T ss_pred CHHH--cCcceEEEeCC-ccc
Confidence 2211 11588888755 543
No 180
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.65 E-value=8.5e-07 Score=75.17 Aligned_cols=137 Identities=16% Similarity=0.150 Sum_probs=86.7
Q ss_pred HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcE---------EEEEcCCHHHHHHHHHHHHhccCCCCCCce
Q 021691 120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALE---------VVISDGNPQVVDYIQRNVDANSGAFGGTTV 190 (309)
Q Consensus 120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~---------V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v 190 (309)
..||.-+.......+|..|||--||+|.+.+..|....... ++++|+++++++.++.|+...+.. ..+
T Consensus 14 ~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~---~~i 90 (179)
T PF01170_consen 14 PTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE---DYI 90 (179)
T ss_dssp HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C---GGE
T ss_pred HHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccC---Cce
Confidence 56777777766667888999999999999888766544434 889999999999999999988773 345
Q ss_pred EEEEeeCCCCCCCCCCCCccEEEEcCCCCCc---------ccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHH
Q 021691 191 KSMTLHWNQDDFPYIVDTFDVIVASDCTFFK---------EFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEI 261 (309)
Q Consensus 191 ~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~---------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~ 261 (309)
.+...|. ...+...+.+|+|++ |+.|.. ..+..+++.+.+++++ . .+++.. ... .|.+.+
T Consensus 91 ~~~~~D~--~~l~~~~~~~d~Ivt-nPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~--~v~l~~-~~~----~~~~~~ 159 (179)
T PF01170_consen 91 DFIQWDA--RELPLPDGSVDAIVT-NPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-R--AVFLTT-SNR----ELEKAL 159 (179)
T ss_dssp EEEE--G--GGGGGTTSBSCEEEE-E--STTSHCHHHHHHHHHHHHHHHHHCHSTT-C--EEEEEE-SCC----CHHHHH
T ss_pred EEEecch--hhcccccCCCCEEEE-CcchhhhccCHHHHHHHHHHHHHHHHHHCCC-C--EEEEEE-CCH----HHHHHh
Confidence 5554433 333344578999999 555552 2345566777777766 2 333333 332 245556
Q ss_pred HhCCCeEEE
Q 021691 262 EGNHLHFSI 270 (309)
Q Consensus 262 ~~~G~~~~~ 270 (309)
...++....
T Consensus 160 ~~~~~~~~~ 168 (179)
T PF01170_consen 160 GLKGWRKRK 168 (179)
T ss_dssp TSTTSEEEE
T ss_pred cchhhceEE
Confidence 666665543
No 181
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.65 E-value=5.7e-07 Score=78.69 Aligned_cols=137 Identities=11% Similarity=0.085 Sum_probs=90.1
Q ss_pred ccccCCCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccC
Q 021691 104 RCNIDNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSG 183 (309)
Q Consensus 104 ~~~~~~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~ 183 (309)
+...+.||+. .=.....|.+|..... ..++.+||..|||.|.-...||.. +.+|+|+|+++.+++.+.+. |++
T Consensus 15 rw~~~~~~f~-~~~pnp~L~~~~~~l~-~~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e---~~~ 87 (226)
T PRK13256 15 RWQNDDVGFC-QESPNEFLVKHFSKLN-INDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQ---NTI 87 (226)
T ss_pred HHhcCCCCCc-cCCCCHHHHHHHHhcC-CCCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHH---cCC
Confidence 3444667763 2223455656654432 235789999999999999999886 67899999999999988552 221
Q ss_pred C-----------CCCCceEEEEeeCCCCCC-CCCCCCccEEEEcC--CCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 184 A-----------FGGTTVKSMTLHWNQDDF-PYIVDTFDVIVASD--CTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 184 ~-----------~~~~~v~~~~l~w~~~~~-~~~~~~fDvIi~~d--~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
. .....+++...|.-+... ....++||+|+-.- |...++.....++.+.++|+|+|...++.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 88 NYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred CcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 1 112345555554433221 12235899977544 4445778899999999999999965555544
No 182
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=98.64 E-value=3.2e-08 Score=87.92 Aligned_cols=127 Identities=25% Similarity=0.268 Sum_probs=84.5
Q ss_pred CCCceeecccHHHHHHHHhhC---cCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHH-HHHHhccCC
Q 021691 109 NTGLVCHWPSEDVLAFFSLSH---ADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQ-RNVDANSGA 184 (309)
Q Consensus 109 ~tG~~~~W~sa~~La~~l~~~---~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~-~n~~~n~~~ 184 (309)
.-|++ +|+++..|..++... .-.+.||+|||||||+|+.++.+... +...|.+.|.|.++++... .|+..|...
T Consensus 89 EGg~k-~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~-~~~~~~fqD~na~vl~~~t~pn~~~~~~~ 166 (282)
T KOG2920|consen 89 EGGLK-LWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVK-GAVSVHFQDFNAEVLRLVTLPNILVNSHA 166 (282)
T ss_pred ecceE-EeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhh-ccceeeeEecchhheeeecccceecchhh
Confidence 34677 999999999999865 34578999999999999999997665 4579999999998884322 222222111
Q ss_pred C----CCCce-EEE---EeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHH-HHHHHHHHhcCC
Q 021691 185 F----GGTTV-KSM---TLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDL-ARIIKFLLKKVG 239 (309)
Q Consensus 185 ~----~~~~v-~~~---~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~l-l~~l~~lLk~~G 239 (309)
. ....+ ... ..||.... .....||+|+++..+|.....+.+ ......+++++|
T Consensus 167 ~~~~~e~~~~~~i~~s~l~dg~~~~--t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~ 228 (282)
T KOG2920|consen 167 GVEEKENHKVDEILNSLLSDGVFNH--TERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDG 228 (282)
T ss_pred hhhhhhcccceeccccccccchhhh--ccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccc
Confidence 0 00000 000 01331100 001379999999999998888877 666666777777
No 183
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.63 E-value=3.3e-07 Score=80.03 Aligned_cols=162 Identities=17% Similarity=0.130 Sum_probs=98.2
Q ss_pred ccCCCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHH-HHHhccCC
Q 021691 106 NIDNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQR-NVDANSGA 184 (309)
Q Consensus 106 ~~~~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~-n~~~n~~~ 184 (309)
..+.||+. .=.....|.+|+.. ....++.+||..|||.|.-.+.||.. +.+|+|+|+++.+++.+.+ +.......
T Consensus 11 ~~~~~~w~-~~~~~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~ 86 (218)
T PF05724_consen 11 QEGQTPWD-QGEPNPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVT 86 (218)
T ss_dssp HTT--TT---TTSTHHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECT
T ss_pred hcCCCCCC-CCCCCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcc
Confidence 34566654 33335667777776 34456779999999999999999986 6799999999999998843 21111111
Q ss_pred -------CCCCceEEEEeeCCCCCCCCCCCCccEEEEcCC--CCCcccHHHHHHHHHHHHhcCCCeEEEEEeec----C-
Q 021691 185 -------FGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDC--TFFKEFHKDLARIIKFLLKKVGPSEALFFSPK----R- 250 (309)
Q Consensus 185 -------~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~--ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~----r- 250 (309)
....+|++...|.-+.. +...++||+|+=..+ .-.++.++..++.+.++|+|+|...++.+... .
T Consensus 87 ~~~~~~~~~~~~i~~~~gDfF~l~-~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~G 165 (218)
T PF05724_consen 87 SVGGFKRYQAGRITIYCGDFFELP-PEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEG 165 (218)
T ss_dssp TCTTEEEETTSSEEEEES-TTTGG-GSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSS
T ss_pred cccceeeecCCceEEEEcccccCC-hhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCC
Confidence 01234455444433211 112358999987543 34478899999999999999994212222211 0
Q ss_pred -C--chHHHHHHHHHhCCCeEEEEec
Q 021691 251 -G--DSLDKFLEEIEGNHLHFSIIEN 273 (309)
Q Consensus 251 -~--~~~~~f~~~~~~~G~~~~~~~~ 273 (309)
+ -+.+++.+.+. .+|.++.++.
T Consensus 166 PPf~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 166 PPFSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp SS----HHHHHHHHT-TTEEEEEEEE
T ss_pred cCCCCCHHHHHHHhc-CCcEEEEEec
Confidence 1 13345555555 7888877765
No 184
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.63 E-value=2.5e-07 Score=87.03 Aligned_cols=101 Identities=22% Similarity=0.137 Sum_probs=74.4
Q ss_pred CCeEEEeCCCCChhhHHHHHhc-CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691 135 SKRVIELGSGYGLAGLVIAATT-EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV 213 (309)
Q Consensus 135 g~~VLELG~GtG~~~l~la~~~-~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi 213 (309)
+.+|||+.||+|..|+.+++.. ++.+|+++|.++++++.+++|++.|+.. ++.+...|..... .....+||+|.
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~----~~~v~~~Da~~~l-~~~~~~fDvId 119 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE----NIEVPNEDAANVL-RYRNRKFHVID 119 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----cEEEEchhHHHHH-HHhCCCCCEEE
Confidence 3589999999999999988875 5689999999999999999999999873 3444433322111 11135799999
Q ss_pred EcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691 214 ASDCTFFKEFHKDLARIIKFLLKKVGPSEALFF 246 (309)
Q Consensus 214 ~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~ 246 (309)
. |+ |. ....+++.+.+.++++| .+.+.
T Consensus 120 l-DP-fG--s~~~fld~al~~~~~~g--lL~vT 146 (374)
T TIGR00308 120 I-DP-FG--TPAPFVDSAIQASAERG--LLLVT 146 (374)
T ss_pred e-CC-CC--CcHHHHHHHHHhcccCC--EEEEE
Confidence 8 88 43 33467888888888888 44444
No 185
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.61 E-value=3e-07 Score=75.34 Aligned_cols=131 Identities=16% Similarity=0.099 Sum_probs=92.6
Q ss_pred CCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhc-CCcEEEEEcCCHHHHHHHHHHHHhccCCCCC
Q 021691 109 NTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATT-EALEVVISDGNPQVVDYIQRNVDANSGAFGG 187 (309)
Q Consensus 109 ~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~-~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~ 187 (309)
+.|. +-|++-.+|+-+......-.|+-|||+|.|||.++-++.++. ....+++++.+++....+.+.....++
T Consensus 25 tVGa--I~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~i---- 98 (194)
T COG3963 25 TVGA--ILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNI---- 98 (194)
T ss_pred eeee--ecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccc----
Confidence 4565 789999999999998888899999999999999998876652 346899999999999988776443222
Q ss_pred CceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCc--ccHHHHHHHHHHHHhcCCCeEEEEEeec
Q 021691 188 TTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFK--EFHKDLARIIKFLLKKVGPSEALFFSPK 249 (309)
Q Consensus 188 ~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~lLk~~G~~~~ii~~~~ 249 (309)
+.....+............||.|+++-++-.. ...-.+++.+...|..|| .++.++..
T Consensus 99 --i~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg--~lvqftYg 158 (194)
T COG3963 99 --INGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGG--PLVQFTYG 158 (194)
T ss_pred --cccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCC--eEEEEEec
Confidence 11111111111122345789999998766553 344567888888888888 45555543
No 186
>PLN02823 spermine synthase
Probab=98.55 E-value=1e-06 Score=81.76 Aligned_cols=104 Identities=23% Similarity=0.300 Sum_probs=72.5
Q ss_pred CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691 134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV 213 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi 213 (309)
..++||.||+|.|.....+++..+..+|+++|+++++++.+++.+..++-.....++++..-|.-... ....++||+|+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L-~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAEL-EKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHH-hhCCCCccEEE
Confidence 45799999999999998877766678999999999999999998776542223345655544322111 12346899999
Q ss_pred EcCCCCCc--c-----cHHHHHH-HHHHHHhcCC
Q 021691 214 ASDCTFFK--E-----FHKDLAR-IIKFLLKKVG 239 (309)
Q Consensus 214 ~~d~ly~~--~-----~~~~ll~-~l~~lLk~~G 239 (309)
+ |+.-.. . .-..+++ .+++.|+++|
T Consensus 182 ~-D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~G 214 (336)
T PLN02823 182 G-DLADPVEGGPCYQLYTKSFYERIVKPKLNPGG 214 (336)
T ss_pred e-cCCCccccCcchhhccHHHHHHHHHHhcCCCc
Confidence 8 542110 0 0234666 8899999999
No 187
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.54 E-value=1e-06 Score=78.72 Aligned_cols=89 Identities=12% Similarity=0.183 Sum_probs=62.1
Q ss_pred HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691 120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ 199 (309)
Q Consensus 120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~ 199 (309)
..+.+.+.+.....++.+|||+|||+|.++..+++.. .+|+++|.++.+++.++.++.. ..++.+...|...
T Consensus 15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~------~~~v~v~~~D~~~ 86 (253)
T TIGR00755 15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL------YERLEVIEGDALK 86 (253)
T ss_pred HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc------CCcEEEEECchhc
Confidence 4445556665566678999999999999999998874 4799999999999999887643 1245555554433
Q ss_pred CCCCCCCCCcc---EEEEcCCCCCc
Q 021691 200 DDFPYIVDTFD---VIVASDCTFFK 221 (309)
Q Consensus 200 ~~~~~~~~~fD---vIi~~d~ly~~ 221 (309)
... ..|| +|+++-+ |+.
T Consensus 87 ~~~----~~~d~~~~vvsNlP-y~i 106 (253)
T TIGR00755 87 VDL----PDFPKQLKVVSNLP-YNI 106 (253)
T ss_pred CCh----hHcCCcceEEEcCC-hhh
Confidence 222 1355 7777544 543
No 188
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.53 E-value=7.3e-07 Score=76.60 Aligned_cols=126 Identities=15% Similarity=0.162 Sum_probs=87.3
Q ss_pred eEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC-CCCCCCccEEEEc
Q 021691 137 RVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF-PYIVDTFDVIVAS 215 (309)
Q Consensus 137 ~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~-~~~~~~fDvIi~~ 215 (309)
-+||||||.|...+.+|+..+...++|+|.....+..+...+...++ .++.+...+...... -..++++|-|...
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l----~Nv~~~~~da~~~l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL----KNVRFLRGDARELLRRLFPPGSVDRIYIN 95 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT----SSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc----cceEEEEccHHHHHhhcccCCchheEEEe
Confidence 79999999999999999999999999999999999999999988877 467776665432111 1224688888774
Q ss_pred CCC-CCcc-------cHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhC--CCeEE
Q 021691 216 DCT-FFKE-------FHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGN--HLHFS 269 (309)
Q Consensus 216 d~l-y~~~-------~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~--G~~~~ 269 (309)
-+= +... .-+.++..+.++|++|| .+.+.+....-.+...+.+.+. +|...
T Consensus 96 FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG---~l~~~TD~~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 96 FPDPWPKKRHHKRRLVNPEFLELLARVLKPGG---ELYFATDVEEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp S-----SGGGGGGSTTSHHHHHHHHHHEEEEE---EEEEEES-HHHHHHHHHHHHHHSTTEEEE
T ss_pred CCCCCcccchhhhhcCCchHHHHHHHHcCCCC---EEEEEeCCHHHHHHHHHHHHhcCcCeEEc
Confidence 321 1111 24779999999999999 4444554445555666777773 56543
No 189
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.48 E-value=1.6e-06 Score=75.03 Aligned_cols=128 Identities=18% Similarity=0.137 Sum_probs=87.1
Q ss_pred CCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCC-ccEEE
Q 021691 135 SKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDT-FDVIV 213 (309)
Q Consensus 135 g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~-fDvIi 213 (309)
+++++|+|+|.|++|+.+|-.++..+|+.+|....=+..++.-...-++. ++++...+.++. .. ..+ ||+|.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~----nv~i~~~RaE~~--~~-~~~~~D~vt 140 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE----NVEIVHGRAEEF--GQ-EKKQYDVVT 140 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC----CeEEehhhHhhc--cc-ccccCcEEE
Confidence 68999999999999999998888889999999887777777766665552 344443332211 11 123 99999
Q ss_pred EcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEecc
Q 021691 214 ASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENY 274 (309)
Q Consensus 214 ~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~~ 274 (309)
+-. ......++.-...+++++|...++.+.. -.+-..+...++...|+.++.+..+
T Consensus 141 sRA----va~L~~l~e~~~pllk~~g~~~~~k~~~-~~~e~~e~~~a~~~~~~~~~~~~~~ 196 (215)
T COG0357 141 SRA----VASLNVLLELCLPLLKVGGGFLAYKGLA-GKDELPEAEKAILPLGGQVEKVFSL 196 (215)
T ss_pred eeh----ccchHHHHHHHHHhcccCCcchhhhHHh-hhhhHHHHHHHHHhhcCcEEEEEEe
Confidence 943 3456788889999999988322112221 2234456667777778887766543
No 190
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.44 E-value=5.6e-07 Score=77.40 Aligned_cols=108 Identities=13% Similarity=0.185 Sum_probs=84.0
Q ss_pred CCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEE
Q 021691 135 SKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVA 214 (309)
Q Consensus 135 g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~ 214 (309)
...++|||||.|.+...+.+. +..+++.+|.+-.|++.++.. +. ..+.+..+.-+++..++.++++|+||+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e-~vekli~~DtS~~M~~s~~~~-qd-------p~i~~~~~v~DEE~Ldf~ens~DLiis 143 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGE-GVEKLIMMDTSYDMIKSCRDA-QD-------PSIETSYFVGDEEFLDFKENSVDLIIS 143 (325)
T ss_pred CcceeecccchhhhhHHHHhc-chhheeeeecchHHHHHhhcc-CC-------CceEEEEEecchhcccccccchhhhhh
Confidence 357999999999999887665 467899999999999988753 11 344555555556666677899999999
Q ss_pred cCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchH
Q 021691 215 SDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSL 254 (309)
Q Consensus 215 ~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~ 254 (309)
+-.+|+..+.+..+..++..|||+| .++.+-...+|+
T Consensus 144 SlslHW~NdLPg~m~~ck~~lKPDg---~FiasmlggdTL 180 (325)
T KOG2940|consen 144 SLSLHWTNDLPGSMIQCKLALKPDG---LFIASMLGGDTL 180 (325)
T ss_pred hhhhhhhccCchHHHHHHHhcCCCc---cchhHHhccccH
Confidence 9999999999999999999999999 444443333433
No 191
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.42 E-value=2.5e-06 Score=79.08 Aligned_cols=129 Identities=12% Similarity=0.081 Sum_probs=77.5
Q ss_pred cccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCC----CCceE
Q 021691 116 WPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFG----GTTVK 191 (309)
Q Consensus 116 W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~----~~~v~ 191 (309)
|--+..+..|+.......++.+|||||||-|.--.-... .+...++|+|++...|+.++++.....-... .....
T Consensus 44 wvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~-~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~ 122 (331)
T PF03291_consen 44 WVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQK-AKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFI 122 (331)
T ss_dssp HHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHH-TT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCE
T ss_pred HHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccch
Confidence 666777777765433333788999999997654333344 3578999999999999999998843211100 01122
Q ss_pred EE--EeeCCCCC----CCCCCCCccEEEEcCCCCC----cccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 192 SM--TLHWNQDD----FPYIVDTFDVIVASDCTFF----KEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 192 ~~--~l~w~~~~----~~~~~~~fDvIi~~d~ly~----~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
+. ..|--... ......+||+|=|-.++|. .+....+++.+...|+||| .+|...
T Consensus 123 a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG--~FIgT~ 186 (331)
T PF03291_consen 123 AEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGG--YFIGTT 186 (331)
T ss_dssp EEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEE--EEEEEE
T ss_pred hheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCC--EEEEEe
Confidence 22 22111110 1111358999999887776 4566779999999999999 444444
No 192
>PRK00536 speE spermidine synthase; Provisional
Probab=98.38 E-value=5.1e-06 Score=74.32 Aligned_cols=118 Identities=11% Similarity=0.022 Sum_probs=81.4
Q ss_pred CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691 134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV 213 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi 213 (309)
..++||=+|.|-|.....+.+. + .+|+.+|+++++++.+++-+....-.+...++++.. |-. ....++||+||
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh-~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~--~~~---~~~~~~fDVII 144 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKY-D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK--QLL---DLDIKKYDLII 144 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCc-C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee--hhh---hccCCcCCEEE
Confidence 4589999999999999998886 3 499999999999999999665533334455666553 211 11236899999
Q ss_pred EcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC----CchHHHHHHHHHhCCCe
Q 021691 214 ASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR----GDSLDKFLEEIEGNHLH 267 (309)
Q Consensus 214 ~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r----~~~~~~f~~~~~~~G~~ 267 (309)
. |.++. +...+.+++.|+++| +++..... ...+....+.+++ .|.
T Consensus 145 v-Ds~~~----~~fy~~~~~~L~~~G---i~v~Qs~sp~~~~~~~~~i~~~l~~-~F~ 193 (262)
T PRK00536 145 C-LQEPD----IHKIDGLKRMLKEDG---VFISVAKHPLLEHVSMQNALKNMGD-FFS 193 (262)
T ss_pred E-cCCCC----hHHHHHHHHhcCCCc---EEEECCCCcccCHHHHHHHHHHHHh-hCC
Confidence 8 77665 456688999999999 33333222 2233444555555 465
No 193
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.38 E-value=2.6e-06 Score=70.69 Aligned_cols=78 Identities=18% Similarity=0.143 Sum_probs=55.2
Q ss_pred CeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCC-CccEEEE
Q 021691 136 KRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVD-TFDVIVA 214 (309)
Q Consensus 136 ~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~-~fDvIi~ 214 (309)
+.|+|+.||.|..++.+|+. ..+|+++|+++.-++.+++|++.-|.. .+|.+...||.+........ .||+|++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~--~~~Viaidid~~~~~~a~hNa~vYGv~---~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART--FDRVIAIDIDPERLECAKHNAEVYGVA---DNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT--T-EEEEEES-HHHHHHHHHHHHHTT-G---GGEEEEES-HHHHGGGB------SEEEE
T ss_pred CEEEEeccCcCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEeCCHHHHHhhccccccccEEEE
Confidence 36999999999999999997 568999999999999999999998873 57888888886543222112 2899999
Q ss_pred cCCC
Q 021691 215 SDCT 218 (309)
Q Consensus 215 ~d~l 218 (309)
+++.
T Consensus 76 SPPW 79 (163)
T PF09445_consen 76 SPPW 79 (163)
T ss_dssp ---B
T ss_pred CCCC
Confidence 7754
No 194
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=2.1e-06 Score=81.91 Aligned_cols=114 Identities=16% Similarity=0.159 Sum_probs=81.3
Q ss_pred ccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEee
Q 021691 117 PSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLH 196 (309)
Q Consensus 117 ~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~ 196 (309)
.++++|..++.++..+..++.++|+-||||..|+.+|+. ..+|+++++++++++.|+.|+..|++. +.++....
T Consensus 366 ~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~Ngis----Na~Fi~gq 439 (534)
T KOG2187|consen 366 SAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGIS----NATFIVGQ 439 (534)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCcc----ceeeeecc
Confidence 457899999999998889999999999999999998886 789999999999999999999999985 33333331
Q ss_pred CCCC---CCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhc
Q 021691 197 WNQD---DFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKK 237 (309)
Q Consensus 197 w~~~---~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~ 237 (309)
-++. ......++-++|...|+.- ...+..+++.++..-++
T Consensus 440 aE~~~~sl~~~~~~~~~~v~iiDPpR-~Glh~~~ik~l~~~~~~ 482 (534)
T KOG2187|consen 440 AEDLFPSLLTPCCDSETLVAIIDPPR-KGLHMKVIKALRAYKNP 482 (534)
T ss_pred hhhccchhcccCCCCCceEEEECCCc-ccccHHHHHHHHhccCc
Confidence 1111 0111112345555556554 44556666666665443
No 195
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.28 E-value=1.4e-05 Score=77.38 Aligned_cols=130 Identities=17% Similarity=0.158 Sum_probs=86.5
Q ss_pred CCceeeccc-HHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCC-cEEEEEcCCHHHHHHHHHHHHhccCCCCC
Q 021691 110 TGLVCHWPS-EDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEA-LEVVISDGNPQVVDYIQRNVDANSGAFGG 187 (309)
Q Consensus 110 tG~~~~W~s-a~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~-~~V~~tD~~~~~l~~~~~n~~~n~~~~~~ 187 (309)
.|+.++=+. +...+..+.. ...+|.+|||++||.|.=+..+|...+. +.|++.|+++.-+..+++|++..|+.
T Consensus 90 ~G~~yvQd~sS~l~~~~L~~--~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~--- 164 (470)
T PRK11933 90 SGLFYIQEASSMLPVAALFA--DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS--- 164 (470)
T ss_pred CCcEEEECHHHHHHHHHhcc--CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC---
Confidence 355544443 4444444432 3357899999999999998888887643 58999999999999999999998873
Q ss_pred CceEEEEeeCCCCCCCCCCCCccEEEEcCCCCC-------cc----------------cHHHHHHHHHHHHhcCCCeEEE
Q 021691 188 TTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFF-------KE----------------FHKDLARIIKFLLKKVGPSEAL 244 (309)
Q Consensus 188 ~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~-------~~----------------~~~~ll~~l~~lLk~~G~~~~i 244 (309)
++.+...|-.... ......||.|+. |+.-. .. .-..++....++|+||| .++
T Consensus 165 -nv~v~~~D~~~~~-~~~~~~fD~ILv-DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG--~LV 239 (470)
T PRK11933 165 -NVALTHFDGRVFG-AALPETFDAILL-DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGG--TLV 239 (470)
T ss_pred -eEEEEeCchhhhh-hhchhhcCeEEE-cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCc--EEE
Confidence 4444443322111 122457999997 32211 11 12567888889999999 566
Q ss_pred EEeec
Q 021691 245 FFSPK 249 (309)
Q Consensus 245 i~~~~ 249 (309)
++++.
T Consensus 240 YSTCT 244 (470)
T PRK11933 240 YSTCT 244 (470)
T ss_pred EECCC
Confidence 65543
No 196
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.25 E-value=6.1e-06 Score=74.85 Aligned_cols=84 Identities=15% Similarity=0.193 Sum_probs=50.3
Q ss_pred CCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhc-cCCCCCCceEEEEeeCCCCC---CCCCCCCc
Q 021691 135 SKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDAN-SGAFGGTTVKSMTLHWNQDD---FPYIVDTF 209 (309)
Q Consensus 135 g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n-~~~~~~~~v~~~~l~w~~~~---~~~~~~~f 209 (309)
.-++||+|+|. ++..+..++.+ +-+++|||+++..++.|++|++.| ++. .+|.+....-...- .....+.|
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~---~~I~l~~~~~~~~i~~~i~~~~e~~ 178 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLE---SRIELRKQKNPDNIFDGIIQPNERF 178 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-T---TTEEEEE--ST-SSTTTSTT--S-E
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccc---cceEEEEcCCccccchhhhccccee
Confidence 56899999996 57777767665 679999999999999999999999 773 56666554321111 11224689
Q ss_pred cEEEEcCCCCCcc
Q 021691 210 DVIVASDCTFFKE 222 (309)
Q Consensus 210 DvIi~~d~ly~~~ 222 (309)
|+.+|++++|...
T Consensus 179 dftmCNPPFy~s~ 191 (299)
T PF05971_consen 179 DFTMCNPPFYSSQ 191 (299)
T ss_dssp EEEEE-----SS-
T ss_pred eEEecCCccccCh
Confidence 9999999988743
No 197
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=5.3e-06 Score=70.57 Aligned_cols=118 Identities=18% Similarity=0.186 Sum_probs=77.5
Q ss_pred cHHHHHHHHhhCc--CcCCCCeEEEeCCCCChhhHHHHHhcCCc--EEEEEcCCHHHHHHHHHHHHhccCC------CCC
Q 021691 118 SEDVLAFFSLSHA--DMFRSKRVIELGSGYGLAGLVIAATTEAL--EVVISDGNPQVVDYIQRNVDANSGA------FGG 187 (309)
Q Consensus 118 sa~~La~~l~~~~--~~~~g~~VLELG~GtG~~~l~la~~~~~~--~V~~tD~~~~~l~~~~~n~~~n~~~------~~~ 187 (309)
|+..+-.++++.. .+.+|.+.||+|+|+|.++-.++...++. .++++|.-++.++..++|+...--. +..
T Consensus 64 SAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~ 143 (237)
T KOG1661|consen 64 SAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKR 143 (237)
T ss_pred cchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhcc
Confidence 3444433444332 36789999999999999988878666543 3499999999999999999875421 123
Q ss_pred CceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEE
Q 021691 188 TTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALF 245 (309)
Q Consensus 188 ~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii 245 (309)
+++.+...|.... .....+||.|.+. .....+.+.+-..|+++| .+++
T Consensus 144 ~~l~ivvGDgr~g--~~e~a~YDaIhvG------Aaa~~~pq~l~dqL~~gG--rlli 191 (237)
T KOG1661|consen 144 GELSIVVGDGRKG--YAEQAPYDAIHVG------AAASELPQELLDQLKPGG--RLLI 191 (237)
T ss_pred CceEEEeCCcccc--CCccCCcceEEEc------cCccccHHHHHHhhccCC--eEEE
Confidence 4444444332221 1234689999874 233455666777788888 4444
No 198
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.24 E-value=2.5e-05 Score=79.72 Aligned_cols=127 Identities=16% Similarity=0.050 Sum_probs=84.5
Q ss_pred ccHHHHHHHHhhCcCc-CCCCeEEEeCCCCChhhHHHHHhc---------------------------------------
Q 021691 117 PSEDVLAFFSLSHADM-FRSKRVIELGSGYGLAGLVIAATT--------------------------------------- 156 (309)
Q Consensus 117 ~sa~~La~~l~~~~~~-~~g~~VLELG~GtG~~~l~la~~~--------------------------------------- 156 (309)
|--..||.-++..... .++..++|-+||+|.+.+..|...
T Consensus 172 pl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~ 251 (702)
T PRK11783 172 PLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAG 251 (702)
T ss_pred CCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence 3446788777765544 457899999999999988866531
Q ss_pred ---CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCc----ccHHHHHH
Q 021691 157 ---EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFK----EFHKDLAR 229 (309)
Q Consensus 157 ---~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~----~~~~~ll~ 229 (309)
...+++|+|+++.+++.++.|+..+++. ..+.+...|+.+...+...++||+|+++.+.... .....+..
T Consensus 252 ~~~~~~~i~G~Did~~av~~A~~N~~~~g~~---~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~ 328 (702)
T PRK11783 252 LAELPSKFYGSDIDPRVIQAARKNARRAGVA---ELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYS 328 (702)
T ss_pred ccccCceEEEEECCHHHHHHHHHHHHHcCCC---cceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHH
Confidence 0126999999999999999999999983 3566666666543332223579999996554321 23344555
Q ss_pred HHHHHHh---cCCCeEEEEEee
Q 021691 230 IIKFLLK---KVGPSEALFFSP 248 (309)
Q Consensus 230 ~l~~lLk---~~G~~~~ii~~~ 248 (309)
.+-..++ +++ .+.+++.
T Consensus 329 ~lg~~lk~~~~g~--~~~llt~ 348 (702)
T PRK11783 329 QLGRRLKQQFGGW--NAALFSS 348 (702)
T ss_pred HHHHHHHHhCCCC--eEEEEeC
Confidence 5555555 455 4444443
No 199
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.21 E-value=7e-06 Score=68.24 Aligned_cols=82 Identities=9% Similarity=-0.068 Sum_probs=60.8
Q ss_pred EEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCe
Q 021691 162 VISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPS 241 (309)
Q Consensus 162 ~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~ 241 (309)
+|+|.+++|++.++++....+.. ...++++...|.. ..+..+++||+|+++.++++..+...+++.++++|||||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~-~~~~i~~~~~d~~--~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG-- 75 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS-CYKCIEWIEGDAI--DLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGS-- 75 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc-CCCceEEEEechh--hCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCe--
Confidence 48999999999998776543211 0124555555433 345556789999999999998999999999999999999
Q ss_pred EEEEEee
Q 021691 242 EALFFSP 248 (309)
Q Consensus 242 ~~ii~~~ 248 (309)
.+++...
T Consensus 76 ~l~i~d~ 82 (160)
T PLN02232 76 RVSILDF 82 (160)
T ss_pred EEEEEEC
Confidence 5555543
No 200
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.20 E-value=1.6e-05 Score=71.85 Aligned_cols=102 Identities=21% Similarity=0.217 Sum_probs=73.3
Q ss_pred CeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEc
Q 021691 136 KRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVAS 215 (309)
Q Consensus 136 ~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~ 215 (309)
++||-||-|.|.....+.+..+..+++.+|+++.+++.+++-+..........++....-|..+-- .....+||+||.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v-~~~~~~fDvIi~- 155 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFL-RDCEEKFDVIIV- 155 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHH-HhCCCcCCEEEE-
Confidence 799999999999999999988788999999999999999988765432111344544433322111 112348999999
Q ss_pred CCCCCcc-----cHHHHHHHHHHHHhcCC
Q 021691 216 DCTFFKE-----FHKDLARIIKFLLKKVG 239 (309)
Q Consensus 216 d~ly~~~-----~~~~ll~~l~~lLk~~G 239 (309)
|+.-... .-..+.+.+++.|+++|
T Consensus 156 D~tdp~gp~~~Lft~eFy~~~~~~L~~~G 184 (282)
T COG0421 156 DSTDPVGPAEALFTEEFYEGCRRALKEDG 184 (282)
T ss_pred cCCCCCCcccccCCHHHHHHHHHhcCCCc
Confidence 5543311 12678899999999999
No 201
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.20 E-value=1.5e-05 Score=69.91 Aligned_cols=108 Identities=14% Similarity=0.047 Sum_probs=78.6
Q ss_pred CeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCC-CCCCccEEEE
Q 021691 136 KRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPY-IVDTFDVIVA 214 (309)
Q Consensus 136 ~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~-~~~~fDvIi~ 214 (309)
..+||||||.|-.-+.+|+..|...++|+|+....+..+.+.+...++. ++.+...|........ .+++.|-|..
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~----Nlri~~~DA~~~l~~~~~~~sl~~I~i 125 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK----NLRLLCGDAVEVLDYLIPDGSLDKIYI 125 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC----cEEEEcCCHHHHHHhcCCCCCeeEEEE
Confidence 4799999999999999999999999999999999999999998888772 5666555433222122 2347888766
Q ss_pred cCC-CCCcc-------cHHHHHHHHHHHHhcCCCeEEEEEeecC
Q 021691 215 SDC-TFFKE-------FHKDLARIIKFLLKKVGPSEALFFSPKR 250 (309)
Q Consensus 215 ~d~-ly~~~-------~~~~ll~~l~~lLk~~G~~~~ii~~~~r 250 (309)
.-+ .++.. ..+.+++.+.+.|++|| .+.+.+..
T Consensus 126 ~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG---~l~~aTD~ 166 (227)
T COG0220 126 NFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGG---VLHFATDN 166 (227)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHccCCC---EEEEEecC
Confidence 432 22221 24789999999999999 44444443
No 202
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.18 E-value=1.5e-05 Score=70.46 Aligned_cols=97 Identities=18% Similarity=0.268 Sum_probs=69.4
Q ss_pred ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691 115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT 194 (309)
Q Consensus 115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ 194 (309)
+-....++.. +.+...+.++..|||+|.|||.++..+... +++|+|++.+|.|+..+++.++.... ....++..
T Consensus 40 ilkNp~v~~~-I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~---~~kLqV~~ 113 (315)
T KOG0820|consen 40 ILKNPLVIDQ-IVEKADLKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPK---SGKLQVLH 113 (315)
T ss_pred hhcCHHHHHH-HHhccCCCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCc---cceeeEEe
Confidence 3334455554 444556778899999999999999998886 78999999999999999998765433 34556665
Q ss_pred eeCCCCCCCCCCCCccEEEEcCCCCCcc
Q 021691 195 LHWNQDDFPYIVDTFDVIVASDCTFFKE 222 (309)
Q Consensus 195 l~w~~~~~~~~~~~fDvIi~~d~ly~~~ 222 (309)
.|.-..+ ...||.+|++ ..|..+
T Consensus 114 gD~lK~d----~P~fd~cVsN-lPyqIS 136 (315)
T KOG0820|consen 114 GDFLKTD----LPRFDGCVSN-LPYQIS 136 (315)
T ss_pred cccccCC----Ccccceeecc-CCcccc
Confidence 5443333 2569999994 445443
No 203
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.16 E-value=1.1e-05 Score=71.79 Aligned_cols=133 Identities=17% Similarity=0.209 Sum_probs=83.8
Q ss_pred CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCC-CccEE
Q 021691 134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVD-TFDVI 212 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~-~fDvI 212 (309)
+.++||=||.|.|.....+.+..+..+|+++|+++.+++.+++-+..........++++..-|...-. ..... +||+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l-~~~~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFL-KETQEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHH-HTSSST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHH-HhccCCcccEE
Confidence 57899999999999988887765568999999999999999998776443223445655443221100 11123 89999
Q ss_pred EEcCCCCC--cc---cHHHHHHHHHHHHhcCCCeEEEEEeec---CCchHHHHHHHHHhCCCeEEE
Q 021691 213 VASDCTFF--KE---FHKDLARIIKFLLKKVGPSEALFFSPK---RGDSLDKFLEEIEGNHLHFSI 270 (309)
Q Consensus 213 i~~d~ly~--~~---~~~~ll~~l~~lLk~~G~~~~ii~~~~---r~~~~~~f~~~~~~~G~~~~~ 270 (309)
+. |+.-. .. .-...++.+++.|+++| .+++-... ....+....+.+++....+..
T Consensus 155 i~-D~~dp~~~~~~l~t~ef~~~~~~~L~~~G--v~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~ 217 (246)
T PF01564_consen 155 IV-DLTDPDGPAPNLFTREFYQLCKRRLKPDG--VLVLQAGSPFLHPELFKSILKTLRSVFPQVKP 217 (246)
T ss_dssp EE-ESSSTTSCGGGGSSHHHHHHHHHHEEEEE--EEEEEEEETTTTHHHHHHHHHHHHTTSSEEEE
T ss_pred EE-eCCCCCCCcccccCHHHHHHHHhhcCCCc--EEEEEccCcccchHHHHHHHHHHHHhCCceEE
Confidence 98 44321 11 13678899999999999 44433322 233444556667777665443
No 204
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.16 E-value=1.6e-05 Score=68.59 Aligned_cols=130 Identities=17% Similarity=0.140 Sum_probs=81.2
Q ss_pred CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691 134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV 213 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi 213 (309)
...++||.|||.|.++-.+.... ..+|-.+|..+..++.+++.+...... ..++-...+ .+......+||+|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~--v~~~~~~gL----Q~f~P~~~~YDlIW 127 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPR--VGEFYCVGL----QDFTPEEGKYDLIW 127 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCC--EEEEEES-G----GG----TT-EEEEE
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCC--cceEEecCH----hhccCCCCcEeEEE
Confidence 45699999999999987543322 579999999999999999765542211 011111111 11112246899999
Q ss_pred EcCCCCC--cccHHHHHHHHHHHHhcCCCeEEEEEe-----------ecC---CchHHHHHHHHHhCCCeEEEEe
Q 021691 214 ASDCTFF--KEFHKDLARIIKFLLKKVGPSEALFFS-----------PKR---GDSLDKFLEEIEGNHLHFSIIE 272 (309)
Q Consensus 214 ~~d~ly~--~~~~~~ll~~l~~lLk~~G~~~~ii~~-----------~~r---~~~~~~f~~~~~~~G~~~~~~~ 272 (309)
+--|+-| ..+.-.+++..+..|+|+| .+++=. ... ..+.+.|.+.++++|+.+...+
T Consensus 128 ~QW~lghLTD~dlv~fL~RCk~~L~~~G--~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 128 IQWCLGHLTDEDLVAFLKRCKQALKPNG--VIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp EES-GGGS-HHHHHHHHHHHHHHEEEEE--EEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred ehHhhccCCHHHHHHHHHHHHHhCcCCc--EEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEec
Confidence 9888877 4567778889999999998 333211 000 2356889999999999986544
No 205
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.12 E-value=6.2e-06 Score=71.29 Aligned_cols=135 Identities=17% Similarity=0.195 Sum_probs=88.0
Q ss_pred cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691 132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV 211 (309)
Q Consensus 132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv 211 (309)
..+|.+|||-..|-|..++.++++ |+.+|+.++.+|.+++.+.-|==..++. ...+.+...|-.+.-..+.+.+||+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwSr~l~--~~~i~iilGD~~e~V~~~~D~sfDa 208 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWSRELF--EIAIKIILGDAYEVVKDFDDESFDA 208 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccCCCCcccc--ccccEEecccHHHHHhcCCccccce
Confidence 457999999999999999997665 6669999999999999887542111111 1123333332222222345678999
Q ss_pred EEEcCCCCCcc---cHHHHHHHHHHHHhcCCCeEEEEEeec---C-CchHHHHHHHHHhCCCeEE
Q 021691 212 IVASDCTFFKE---FHKDLARIIKFLLKKVGPSEALFFSPK---R-GDSLDKFLEEIEGNHLHFS 269 (309)
Q Consensus 212 Ii~~d~ly~~~---~~~~ll~~l~~lLk~~G~~~~ii~~~~---r-~~~~~~f~~~~~~~G~~~~ 269 (309)
||--.+=+... .-+.+-+++.++|++||+..-.+..|. | .+......+.+++.||.+.
T Consensus 209 IiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v 273 (287)
T COG2521 209 IIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVV 273 (287)
T ss_pred EeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceee
Confidence 98833322211 235677899999999995333333333 2 3445678889999999853
No 206
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.12 E-value=7.3e-06 Score=72.96 Aligned_cols=138 Identities=21% Similarity=0.209 Sum_probs=86.0
Q ss_pred CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCC-------------C-----------
Q 021691 131 DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAF-------------G----------- 186 (309)
Q Consensus 131 ~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~-------------~----------- 186 (309)
...+|.++||+|||.-+..+..|.. -..+++++|..+..++.+++-++..+ .+ +
T Consensus 53 g~~~g~~llDiGsGPtiy~~lsa~~-~f~~I~l~dy~~~N~~el~kWl~~~~-a~DWs~~~~~v~~lEg~~~~~~e~e~~ 130 (256)
T PF01234_consen 53 GGVKGETLLDIGSGPTIYQLLSACE-WFEEIVLSDYSEQNREELEKWLRKEG-AFDWSPFWKYVCELEGKREKWEEKEEK 130 (256)
T ss_dssp SSS-EEEEEEES-TT--GGGTTGGG-TEEEEEEEESSHHHHHHHHHHHTT-T-S--THHHHHHHHHHTTSSSGHHHHHHH
T ss_pred cCcCCCEEEEeCCCcHHHhhhhHHH-hhcceEEeeccHhhHHHHHHHHCCCC-CCCccHHHHHHHhccCCcchhhhHHHH
Confidence 4567889999999987665443322 35689999999999999988876542 11 0
Q ss_pred -CCceE-EEEeeCCCCCCCC----CCCCccEEEEcCCCC----CcccHHHHHHHHHHHHhcCCCeEEEEEeecC------
Q 021691 187 -GTTVK-SMTLHWNQDDFPY----IVDTFDVIVASDCTF----FKEFHKDLARIIKFLLKKVGPSEALFFSPKR------ 250 (309)
Q Consensus 187 -~~~v~-~~~l~w~~~~~~~----~~~~fDvIi~~d~ly----~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r------ 250 (309)
+..|+ +...|....+.-. ..++||+|+++-|+- +.+.+...++.+.++||||| .+++....+
T Consensus 131 lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG--~Lil~~~l~~t~Y~v 208 (256)
T PF01234_consen 131 LRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGG--HLILAGVLGSTYYMV 208 (256)
T ss_dssp HHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEE--EEEEEEESS-SEEEE
T ss_pred HHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCc--EEEEEEEcCceeEEE
Confidence 01132 2223332222111 123599999988764 35678889999999999999 555544221
Q ss_pred --------CchHHHHHHHHHhCCCeEEEEe
Q 021691 251 --------GDSLDKFLEEIEGNHLHFSIIE 272 (309)
Q Consensus 251 --------~~~~~~f~~~~~~~G~~~~~~~ 272 (309)
.-+.+...+.++++|+.+...+
T Consensus 209 G~~~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 209 GGHKFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp TTEEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred CCEecccccCCHHHHHHHHHHcCCEEEecc
Confidence 2245667788999999987766
No 207
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.12 E-value=2.8e-05 Score=67.21 Aligned_cols=114 Identities=18% Similarity=0.096 Sum_probs=83.2
Q ss_pred HHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC--
Q 021691 125 FSLSHADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD-- 201 (309)
Q Consensus 125 ~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~-- 201 (309)
|+.....+...+++||||.=||.-++..|...+ .++|++.|++++..+....-++..+.. .+|++....--+..
T Consensus 64 fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~---~KI~~i~g~a~esLd~ 140 (237)
T KOG1663|consen 64 FLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD---HKITFIEGPALESLDE 140 (237)
T ss_pred HHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc---ceeeeeecchhhhHHH
Confidence 333333456789999999999998888888776 469999999999999998888888773 56666554322110
Q ss_pred --CCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 202 --FPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 202 --~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
.....++||+++. | ++..........+-+|+++|| +++++
T Consensus 141 l~~~~~~~tfDfaFv-D--adK~nY~~y~e~~l~Llr~GG---vi~~D 182 (237)
T KOG1663|consen 141 LLADGESGTFDFAFV-D--ADKDNYSNYYERLLRLLRVGG---VIVVD 182 (237)
T ss_pred HHhcCCCCceeEEEE-c--cchHHHHHHHHHHHhhccccc---EEEEe
Confidence 0123578999998 3 345666688889999999999 55554
No 208
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=2.6e-05 Score=69.36 Aligned_cols=91 Identities=14% Similarity=0.114 Sum_probs=65.0
Q ss_pred HHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCC
Q 021691 121 VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQD 200 (309)
Q Consensus 121 ~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~ 200 (309)
.+.+.+....+..++.+|||+|+|.|.++..|++. +.+|+++++++.+++.+++.... ..++.+...|.-..
T Consensus 17 ~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~------~~n~~vi~~DaLk~ 88 (259)
T COG0030 17 NVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFAP------YDNLTVINGDALKF 88 (259)
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhccc------ccceEEEeCchhcC
Confidence 34566666667777899999999999999999997 67899999999999999987651 13445554443333
Q ss_pred CCCCCCCCccEEEEcCCCCC
Q 021691 201 DFPYIVDTFDVIVASDCTFF 220 (309)
Q Consensus 201 ~~~~~~~~fDvIi~~d~ly~ 220 (309)
+.+... +++.|+++-+.+-
T Consensus 89 d~~~l~-~~~~vVaNlPY~I 107 (259)
T COG0030 89 DFPSLA-QPYKVVANLPYNI 107 (259)
T ss_pred cchhhc-CCCEEEEcCCCcc
Confidence 322211 6788999555443
No 209
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.10 E-value=3.4e-05 Score=71.01 Aligned_cols=144 Identities=13% Similarity=0.042 Sum_probs=83.7
Q ss_pred HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHh-------cCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEE
Q 021691 120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAAT-------TEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKS 192 (309)
Q Consensus 120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~-------~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~ 192 (309)
..+++++........+.+|+|-.||+|.+.+.+... ....+++|.|+++.++..++.|+..++... .....
T Consensus 32 ~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~--~~~~i 109 (311)
T PF02384_consen 32 REIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDN--SNINI 109 (311)
T ss_dssp HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHC--BGCEE
T ss_pred HHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccc--ccccc
Confidence 445555555445567889999999999887776653 256789999999999999999988776532 11223
Q ss_pred EEeeCCCCCCCCCCCCccEEEEcCCCCCc--c-------------------cHHHHHHHHHHHHhcCCCeEEEEEee--c
Q 021691 193 MTLHWNQDDFPYIVDTFDVIVASDCTFFK--E-------------------FHKDLARIIKFLLKKVGPSEALFFSP--K 249 (309)
Q Consensus 193 ~~l~w~~~~~~~~~~~fDvIi~~d~ly~~--~-------------------~~~~ll~~l~~lLk~~G~~~~ii~~~--~ 249 (309)
...+.-.........+||+|+++.++-.. . .--.++..+.+.|+++|+..+++-.. .
T Consensus 110 ~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~ 189 (311)
T PF02384_consen 110 IQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLF 189 (311)
T ss_dssp EES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHH
T ss_pred cccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhh
Confidence 33322111111124689999997765433 0 11246677888999999433333321 1
Q ss_pred CCchHHHHHHHHHhCC
Q 021691 250 RGDSLDKFLEEIEGNH 265 (309)
Q Consensus 250 r~~~~~~f~~~~~~~G 265 (309)
+......+.+.+-+.+
T Consensus 190 ~~~~~~~iR~~ll~~~ 205 (311)
T PF02384_consen 190 SSSSEKKIRKYLLENG 205 (311)
T ss_dssp GSTHHHHHHHHHHHHE
T ss_pred ccchHHHHHHHHHhhc
Confidence 2233456666665543
No 210
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=0.00014 Score=64.28 Aligned_cols=131 Identities=15% Similarity=0.076 Sum_probs=93.2
Q ss_pred hCcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCC
Q 021691 128 SHADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIV 206 (309)
Q Consensus 128 ~~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~ 206 (309)
+..+..+|.+|||-|+|+|.++.++++..+ .++++-.|.+..-.+.+.+-.+..++ ..++++..-|..........
T Consensus 99 ~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi---~~~vt~~hrDVc~~GF~~ks 175 (314)
T KOG2915|consen 99 SMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI---GDNVTVTHRDVCGSGFLIKS 175 (314)
T ss_pred HHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC---CcceEEEEeecccCCccccc
Confidence 334677899999999999999999998763 46899999998888888888888887 35677777766555443335
Q ss_pred CCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeE
Q 021691 207 DTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHF 268 (309)
Q Consensus 207 ~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~ 268 (309)
..+|.|+. |.. .+...+..+...|+.+|. .++-+++. -+..++-.+++.+.||.-
T Consensus 176 ~~aDaVFL-DlP----aPw~AiPha~~~lk~~g~-r~csFSPC-IEQvqrtce~l~~~gf~~ 230 (314)
T KOG2915|consen 176 LKADAVFL-DLP----APWEAIPHAAKILKDEGG-RLCSFSPC-IEQVQRTCEALRSLGFIE 230 (314)
T ss_pred cccceEEE-cCC----ChhhhhhhhHHHhhhcCc-eEEeccHH-HHHHHHHHHHHHhCCCce
Confidence 67899988 443 344555666668888773 23333332 244456778888888753
No 211
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.10 E-value=5e-05 Score=65.01 Aligned_cols=128 Identities=16% Similarity=0.191 Sum_probs=77.7
Q ss_pred ecccHHH--HHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEE
Q 021691 115 HWPSEDV--LAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKS 192 (309)
Q Consensus 115 ~W~sa~~--La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~ 192 (309)
.||--.+ ..+|+...+ .+..|-|+|||-+.++..+. ...+|..-|.-. .| ..|.+
T Consensus 54 ~WP~nPvd~iI~~l~~~~---~~~viaD~GCGdA~la~~~~---~~~~V~SfDLva-----------~n------~~Vta 110 (219)
T PF05148_consen 54 KWPVNPVDVIIEWLKKRP---KSLVIADFGCGDAKLAKAVP---NKHKVHSFDLVA-----------PN------PRVTA 110 (219)
T ss_dssp TSSS-HHHHHHHHHCTS----TTS-EEEES-TT-HHHHH-----S---EEEEESS------------SS------TTEEE
T ss_pred cCCCCcHHHHHHHHHhcC---CCEEEEECCCchHHHHHhcc---cCceEEEeeccC-----------CC------CCEEE
Confidence 6887654 677776543 45689999999998774431 234688888632 11 12322
Q ss_pred EEeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee-cCCchHHHHHHHHHhCCCeEEEE
Q 021691 193 MTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP-KRGDSLDKFLEEIEGNHLHFSII 271 (309)
Q Consensus 193 ~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~-~r~~~~~~f~~~~~~~G~~~~~~ 271 (309)
-|. ...|..+++.|++|.+-.+-. .++...+.+..|+||++| .++++.. .|-...+.|.+.++..||.....
T Consensus 111 --cdi--a~vPL~~~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G--~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~ 183 (219)
T PF05148_consen 111 --CDI--ANVPLEDESVDVAVFCLSLMG-TNWPDFIREANRVLKPGG--ILKIAEVKSRFENVKQFIKALKKLGFKLKSK 183 (219)
T ss_dssp --S-T--TS-S--TT-EEEEEEES---S-S-HHHHHHHHHHHEEEEE--EEEEEEEGGG-S-HHHHHHHHHCTTEEEEEE
T ss_pred --ecC--ccCcCCCCceeEEEEEhhhhC-CCcHHHHHHHHheeccCc--EEEEEEecccCcCHHHHHHHHHHCCCeEEec
Confidence 222 344556789999998766654 467899999999999999 6666654 46667799999999999998765
Q ss_pred e
Q 021691 272 E 272 (309)
Q Consensus 272 ~ 272 (309)
.
T Consensus 184 d 184 (219)
T PF05148_consen 184 D 184 (219)
T ss_dssp E
T ss_pred c
Confidence 4
No 212
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.09 E-value=5.9e-05 Score=74.51 Aligned_cols=82 Identities=11% Similarity=0.143 Sum_probs=54.5
Q ss_pred CCCeEEEeCCCCChhhHHHHHhcCC--------cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC---C
Q 021691 134 RSKRVIELGSGYGLAGLVIAATTEA--------LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD---F 202 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~~~--------~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~---~ 202 (309)
.+.+|||.|||+|.+.+.++..... ..+++.|+++.++..++.|+...+.. .+.+...+.-... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~----~~~i~~~d~l~~~~~~~ 106 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALL----EINVINFNSLSYVLLNI 106 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCC----Cceeeeccccccccccc
Confidence 4569999999999998887766531 47899999999999999998776511 1122211111110 0
Q ss_pred CCCCCCccEEEEcCCCC
Q 021691 203 PYIVDTFDVIVASDCTF 219 (309)
Q Consensus 203 ~~~~~~fDvIi~~d~ly 219 (309)
....+.||+||++.+.-
T Consensus 107 ~~~~~~fD~IIgNPPy~ 123 (524)
T TIGR02987 107 ESYLDLFDIVITNPPYG 123 (524)
T ss_pred ccccCcccEEEeCCCcc
Confidence 11235799999976654
No 213
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.09 E-value=3.6e-06 Score=71.38 Aligned_cols=134 Identities=18% Similarity=0.176 Sum_probs=91.2
Q ss_pred cHHHHHHHHhhCcCc--CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEe
Q 021691 118 SEDVLAFFSLSHADM--FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTL 195 (309)
Q Consensus 118 sa~~La~~l~~~~~~--~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l 195 (309)
|.....+++.-.... ....++||||+|-|-++..++-. -.+|.+|+.|..|...+++. +. + ....+
T Consensus 94 Se~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~--feevyATElS~tMr~rL~kk----~y-----n-Vl~~~ 161 (288)
T KOG3987|consen 94 SEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPT--FEEVYATELSWTMRDRLKKK----NY-----N-VLTEI 161 (288)
T ss_pred cHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcch--HHHHHHHHhhHHHHHHHhhc----CC-----c-eeeeh
Confidence 445556666554322 23479999999999999887665 45799999999998888753 11 1 12345
Q ss_pred eCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhc-CCCeEEEEEee-------------cCC----------
Q 021691 196 HWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKK-VGPSEALFFSP-------------KRG---------- 251 (309)
Q Consensus 196 ~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~-~G~~~~ii~~~-------------~r~---------- 251 (309)
+|.+. +-+||+|.|-..+-...+.-.|++.++.+|+| +|+..+-+.-| .|+
T Consensus 162 ew~~t-----~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~ 236 (288)
T KOG3987|consen 162 EWLQT-----DVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRS 236 (288)
T ss_pred hhhhc-----CceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCcc
Confidence 56543 34699999988776667788999999999999 67432211111 121
Q ss_pred --chHHHHHHHHHhCCCeE
Q 021691 252 --DSLDKFLEEIEGNHLHF 268 (309)
Q Consensus 252 --~~~~~f~~~~~~~G~~~ 268 (309)
+....|.+.++++|+.+
T Consensus 237 ~ee~v~~~~e~lr~~g~~v 255 (288)
T KOG3987|consen 237 FEEEVARFMELLRNCGYRV 255 (288)
T ss_pred HHHHHHHHHHHHHhcCchh
Confidence 12346888899999887
No 214
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.06 E-value=3.9e-05 Score=75.28 Aligned_cols=128 Identities=16% Similarity=0.101 Sum_probs=86.1
Q ss_pred CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691 134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV 213 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi 213 (309)
.+..+||||||.|-..+.+|+..|...++|+|.....+..+.+.+...++ .++.+...+...-......+++|-|.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l----~N~~~~~~~~~~~~~~~~~~sv~~i~ 422 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI----TNFLLFPNNLDLILNDLPNNSLDGIY 422 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC----CeEEEEcCCHHHHHHhcCcccccEEE
Confidence 35689999999999999999999999999999999988888888777666 34544433322111123456788887
Q ss_pred EcCCCCCcc--------cHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCC-CeE
Q 021691 214 ASDCTFFKE--------FHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNH-LHF 268 (309)
Q Consensus 214 ~~d~ly~~~--------~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G-~~~ 268 (309)
...+==+++ ..+.+++.+.++|++|| .+.+.+....-....++.+.+.+ |..
T Consensus 423 i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG---~i~~~TD~~~y~~~~~~~~~~~~~f~~ 483 (506)
T PRK01544 423 ILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNG---NLVFASDIENYFYEAIELIQQNGNFEI 483 (506)
T ss_pred EECCCCCCCCCCccccccCHHHHHHHHHhcCCCC---EEEEEcCCHHHHHHHHHHHHhCCCeEe
Confidence 743322211 24779999999999999 44444443333334455566654 543
No 215
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.04 E-value=8.4e-06 Score=68.18 Aligned_cols=94 Identities=18% Similarity=0.290 Sum_probs=68.5
Q ss_pred CeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEc
Q 021691 136 KRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVAS 215 (309)
Q Consensus 136 ~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~ 215 (309)
..+.|||+|+|.++...|+. +.+|++++.+|.....+++|+..++. .++.+...|-..-+. ...|+|+|-
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~----~n~evv~gDA~~y~f----e~ADvvicE 103 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGD----VNWEVVVGDARDYDF----ENADVVICE 103 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCC----cceEEEecccccccc----cccceeHHH
Confidence 58999999999999997776 88999999999999999999987776 355555543322221 457999883
Q ss_pred --CCCCCcccHHHHHHHHHHHHhcCC
Q 021691 216 --DCTFFKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 216 --d~ly~~~~~~~ll~~l~~lLk~~G 239 (309)
|..-..+..-..++.+...|+.++
T Consensus 104 mlDTaLi~E~qVpV~n~vleFLr~d~ 129 (252)
T COG4076 104 MLDTALIEEKQVPVINAVLEFLRYDP 129 (252)
T ss_pred HhhHHhhcccccHHHHHHHHHhhcCC
Confidence 222233444556667777888877
No 216
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.04 E-value=2.3e-05 Score=63.45 Aligned_cols=58 Identities=21% Similarity=0.251 Sum_probs=48.7
Q ss_pred eEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC
Q 021691 137 RVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN 198 (309)
Q Consensus 137 ~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~ 198 (309)
.|+|+|||.|..++.+++..+..+|+++|.+|.+.+.+++|++.|+.. ++.+....+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~----~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP----NVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC----cEEEEEeeee
Confidence 489999999999999988766669999999999999999999999863 3555555444
No 217
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.02 E-value=2.3e-05 Score=70.85 Aligned_cols=105 Identities=17% Similarity=0.143 Sum_probs=70.4
Q ss_pred CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCC--ceEEEEeeCCCC----CCCCCCC
Q 021691 134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGT--TVKSMTLHWNQD----DFPYIVD 207 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~--~v~~~~l~w~~~----~~~~~~~ 207 (309)
++..+++||||-|.-.+-.-+ .+...++++|+.+-.++.+++..+...-....- .+.+...|-... ..+..+.
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~k-AgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDK-AGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred cccccceeccCCcccHhHhhh-hcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 577899999998766555444 356799999999999999998876432211111 122222222111 1122345
Q ss_pred CccEEEEcCCCCC----cccHHHHHHHHHHHHhcCC
Q 021691 208 TFDVIVASDCTFF----KEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 208 ~fDvIi~~d~ly~----~~~~~~ll~~l~~lLk~~G 239 (309)
+||+|=|--++|. .+....++..+.+.|+|||
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG 231 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGG 231 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCc
Confidence 5999988777765 4567778999999999999
No 218
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.01 E-value=1.1e-05 Score=69.31 Aligned_cols=109 Identities=17% Similarity=0.166 Sum_probs=63.9
Q ss_pred CCCeEEEeCCCCC----hhhHHHHHhc---C--CcEEEEEcCCHHHHHHHHHHHH-hccCC--------------CC---
Q 021691 134 RSKRVIELGSGYG----LAGLVIAATT---E--ALEVVISDGNPQVVDYIQRNVD-ANSGA--------------FG--- 186 (309)
Q Consensus 134 ~g~~VLELG~GtG----~~~l~la~~~---~--~~~V~~tD~~~~~l~~~~~n~~-~n~~~--------------~~--- 186 (309)
+.-+|+-.||+|| .+++.+.... . .-+++|||+|+.+|+.|++-+= .+.+. .+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 3469999999999 3344444411 1 2489999999999999985321 01110 00
Q ss_pred ------CCceEEEEeeCCCCCCCCCCCCccEEEEcCCC--CCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691 187 ------GTTVKSMTLHWNQDDFPYIVDTFDVIVASDCT--FFKEFHKDLARIIKFLLKKVGPSEALFF 246 (309)
Q Consensus 187 ------~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~l--y~~~~~~~ll~~l~~lLk~~G~~~~ii~ 246 (309)
+..|.+..++..+ .....+.||+|+|-+++ |+.+....+++.+.+.|+||| .+++.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~--~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG--~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLD--PDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGG--YLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT---S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEE--EEEE-
T ss_pred eEChHHcCceEEEecccCC--CCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCC--EEEEe
Confidence 2357777776655 22345789999998865 336677889999999999999 44443
No 219
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.98 E-value=2.7e-05 Score=70.67 Aligned_cols=110 Identities=18% Similarity=0.162 Sum_probs=72.2
Q ss_pred CCeEEEeCCCCC----hhhHHHHHhcC----CcEEEEEcCCHHHHHHHHHHHHh----ccC-------------------
Q 021691 135 SKRVIELGSGYG----LAGLVIAATTE----ALEVVISDGNPQVVDYIQRNVDA----NSG------------------- 183 (309)
Q Consensus 135 g~~VLELG~GtG----~~~l~la~~~~----~~~V~~tD~~~~~l~~~~~n~~~----n~~------------------- 183 (309)
.-+|.-.||+|| .+++.+....+ .-+|+|||+|+.+|+.|++-+-. .++
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 369999999999 33444444322 24799999999999999875310 000
Q ss_pred -CC---CCCceEEEEeeCCCCCCCCCCCCccEEEEcCCCC--CcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 184 -AF---GGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTF--FKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 184 -~~---~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly--~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
.+ -+..|.+..++......+ ..+.||+|+|-+++. ..+....+++.+.+.|+||| .+++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~-~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG--~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWA-VPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDG--LLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCc-cCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCc--EEEEeC
Confidence 00 013455555555432221 246899999977653 35678999999999999999 444433
No 220
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.98 E-value=7.2e-05 Score=67.14 Aligned_cols=135 Identities=16% Similarity=0.152 Sum_probs=84.6
Q ss_pred cCCCCceeecccH--HHHHHHHhhCc-CcC--CCCeEEEeCCCCC----hhhHHHHHhcC-----CcEEEEEcCCHHHHH
Q 021691 107 IDNTGLVCHWPSE--DVLAFFSLSHA-DMF--RSKRVIELGSGYG----LAGLVIAATTE-----ALEVVISDGNPQVVD 172 (309)
Q Consensus 107 ~~~tG~~~~W~sa--~~La~~l~~~~-~~~--~g~~VLELG~GtG----~~~l~la~~~~-----~~~V~~tD~~~~~l~ 172 (309)
++-|++. |+.. ..|.+.+.... ... +.-+|.-.||+|| .+++.+....+ .-+|+|||+|..+|+
T Consensus 66 in~T~FF--R~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~ 143 (268)
T COG1352 66 INVTEFF--RDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLE 143 (268)
T ss_pred hccchhc--cCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHH
Confidence 4666653 5443 33566655311 101 3569999999999 44555556554 358999999999999
Q ss_pred HHHHHHHh-----ccCCC----------C----------CCceEEEEeeCCCCCCCCCCCCccEEEEcCCC-C-CcccHH
Q 021691 173 YIQRNVDA-----NSGAF----------G----------GTTVKSMTLHWNQDDFPYIVDTFDVIVASDCT-F-FKEFHK 225 (309)
Q Consensus 173 ~~~~n~~~-----n~~~~----------~----------~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~l-y-~~~~~~ 225 (309)
.|+.-+=. -++.. . ...|.+..++...+.. ..+.||+|+|-+++ | +.+...
T Consensus 144 ~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~--~~~~fD~IfCRNVLIYFd~~~q~ 221 (268)
T COG1352 144 KARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP--FLGKFDLIFCRNVLIYFDEETQE 221 (268)
T ss_pred HHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc--ccCCCCEEEEcceEEeeCHHHHH
Confidence 99853211 11110 0 1235555554443332 45779999998854 4 456778
Q ss_pred HHHHHHHHHHhcCCCeEEEEEe
Q 021691 226 DLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 226 ~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
.++..++..|++|| .+++.+
T Consensus 222 ~il~~f~~~L~~gG--~LflG~ 241 (268)
T COG1352 222 RILRRFADSLKPGG--LLFLGH 241 (268)
T ss_pred HHHHHHHHHhCCCC--EEEEcc
Confidence 89999999999999 444433
No 221
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.96 E-value=0.00021 Score=64.68 Aligned_cols=126 Identities=17% Similarity=0.177 Sum_probs=77.2
Q ss_pred CcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC--CCCCC
Q 021691 131 DMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF--PYIVD 207 (309)
Q Consensus 131 ~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~--~~~~~ 207 (309)
..+..++|||+|||+|....++...++ ..+++++|.|+.|++.++.-+... .... . ..|..... .....
T Consensus 30 p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~-~~~~--~-----~~~~~~~~~~~~~~~ 101 (274)
T PF09243_consen 30 PDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG-PNNR--N-----AEWRRVLYRDFLPFP 101 (274)
T ss_pred cCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc-cccc--c-----chhhhhhhcccccCC
Confidence 346778999999999987777666555 458999999999999888754432 2110 0 01111100 01112
Q ss_pred CccEEEEcCCCCCccc--HHHHHHHHHHHHhcCCCeEEEEEeecCCchH---HHHHHHHHhCCCeE
Q 021691 208 TFDVIVASDCTFFKEF--HKDLARIIKFLLKKVGPSEALFFSPKRGDSL---DKFLEEIEGNHLHF 268 (309)
Q Consensus 208 ~fDvIi~~d~ly~~~~--~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~---~~f~~~~~~~G~~~ 268 (309)
..|+|+++.++-.... ...+++.+...+++ .+++..+..+..+ .+..+.+.+.|+.+
T Consensus 102 ~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~----~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v 163 (274)
T PF09243_consen 102 PDDLVIASYVLNELPSAARAELVRSLWNKTAP----VLVLVEPGTPAGFRRIAEARDQLLEKGAHV 163 (274)
T ss_pred CCcEEEEehhhhcCCchHHHHHHHHHHHhccC----cEEEEcCCChHHHHHHHHHHHHHhhCCCce
Confidence 3499999998876554 34444444444432 5777777665443 34556677777765
No 222
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.95 E-value=2.1e-05 Score=67.97 Aligned_cols=108 Identities=19% Similarity=0.212 Sum_probs=59.0
Q ss_pred CcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHh-------ccCCCCCCceEEEEeeCCCCC
Q 021691 129 HADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDA-------NSGAFGGTTVKSMTLHWNQDD 201 (309)
Q Consensus 129 ~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~-------n~~~~~~~~v~~~~l~w~~~~ 201 (309)
...+.++...+|||||.|-+-+.+|...+..+++|+++.+...+.++.+.+. .+.. ..++.....|.-+.+
T Consensus 37 ~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~--~~~v~l~~gdfl~~~ 114 (205)
T PF08123_consen 37 ELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKR--PGKVELIHGDFLDPD 114 (205)
T ss_dssp HTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB-----EEEEECS-TTTHH
T ss_pred HhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcc--cccceeeccCccccH
Confidence 3456678899999999999988888888888899999999888777654433 2221 234444443332211
Q ss_pred CC-CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691 202 FP-YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 202 ~~-~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G 239 (309)
.. ..-...|+|++++..|.++....+.+.+ .-||+|.
T Consensus 115 ~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~-~~lk~G~ 152 (205)
T PF08123_consen 115 FVKDIWSDADVVFVNNTCFDPDLNLALAELL-LELKPGA 152 (205)
T ss_dssp HHHHHGHC-SEEEE--TTT-HHHHHHHHHHH-TTS-TT-
T ss_pred hHhhhhcCCCEEEEeccccCHHHHHHHHHHH-hcCCCCC
Confidence 00 0013579999999998876666553333 4455554
No 223
>PHA01634 hypothetical protein
Probab=97.92 E-value=5.7e-05 Score=59.29 Aligned_cols=75 Identities=17% Similarity=0.180 Sum_probs=59.0
Q ss_pred cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691 132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV 211 (309)
Q Consensus 132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv 211 (309)
.+.+++|+|+|++.|--++.++. .|+++|++.+.++...+..+.|++.|.+-. --+..-.|.. .-++||+
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l-~GAK~Vva~E~~~kl~k~~een~k~nnI~D----K~v~~~eW~~-----~Y~~~Di 95 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLL-RGASFVVQYEKEEKLRKKWEEVCAYFNICD----KAVMKGEWNG-----EYEDVDI 95 (156)
T ss_pred eecCCEEEEecCCccchhhHHhh-cCccEEEEeccCHHHHHHHHHHhhhheeee----ceeecccccc-----cCCCcce
Confidence 36899999999999999999776 478999999999999999999999987631 1223336764 2367898
Q ss_pred EEEcCC
Q 021691 212 IVASDC 217 (309)
Q Consensus 212 Ii~~d~ 217 (309)
.+. ||
T Consensus 96 ~~i-DC 100 (156)
T PHA01634 96 FVM-DC 100 (156)
T ss_pred EEE-Ec
Confidence 877 55
No 224
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.89 E-value=2.8e-05 Score=70.80 Aligned_cols=59 Identities=10% Similarity=0.026 Sum_probs=47.1
Q ss_pred HHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHh
Q 021691 122 LAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDA 180 (309)
Q Consensus 122 La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~ 180 (309)
|.+-+.+.....+|..++|.+||.|..+..+++..+ ..+|+|+|.+++|++.+++++..
T Consensus 7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~ 66 (296)
T PRK00050 7 LLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP 66 (296)
T ss_pred cHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc
Confidence 333344433445788999999999999999998875 57999999999999999987643
No 225
>KOG2497 consensus Predicted methyltransferase [General function prediction only]
Probab=97.87 E-value=9.3e-06 Score=72.36 Aligned_cols=130 Identities=18% Similarity=0.072 Sum_probs=80.9
Q ss_pred cccCCCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCC
Q 021691 105 CNIDNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGA 184 (309)
Q Consensus 105 ~~~~~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~ 184 (309)
.....||.. +|++++.|+.++.+++....+++|.++|||.+...+..++. + .-|...|....+.-....+...+...
T Consensus 62 ~~~~~tg~~-~w~~al~L~~~l~~~~d~~~~~~v~~l~~gi~~~~~~~a~~-~-~~v~~~~~~~~~~~~l~~~~~~~~~~ 138 (262)
T KOG2497|consen 62 FLLARTGLS-VWESALSLEADLRDKPDLSSELTVEELGCDIALKHVLAARV-P-DCVVTLDSLRCAGLLLEEIILLSRDL 138 (262)
T ss_pred HHHHHhccc-cchHHHHHHHHHhhCcccccccchHhhccCHHHHHHHHHhc-c-cceecCCccCcHHHHHHHHHhccccc
Confidence 345788886 99999999999999998899999999999999988554553 2 23333333333333333333222211
Q ss_pred CCCCceEEEEeeCCCCCC-C-CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcC
Q 021691 185 FGGTTVKSMTLHWNQDDF-P-YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKV 238 (309)
Q Consensus 185 ~~~~~v~~~~l~w~~~~~-~-~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~ 238 (309)
.....-+...++|..... + .....+|+|+++|+.|. .....++..+..+|..+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~AdV~yd-~~~~~~~~~~~~lL~~~ 193 (262)
T KOG2497|consen 139 SLEVRDSAPELNQAFLESKPETSQEFTDLLGGADVIYD-TELRHLLETLMTLLLRW 193 (262)
T ss_pred cccccccchhHHHHHHhcCcccccchhhheeccCeeeh-hhhhHHHHHHHHHHHhc
Confidence 111111222222221110 1 01233899999999999 77888888888877654
No 226
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.87 E-value=0.00017 Score=62.31 Aligned_cols=122 Identities=13% Similarity=0.088 Sum_probs=75.5
Q ss_pred EEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEcCC
Q 021691 138 VIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDC 217 (309)
Q Consensus 138 VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ 217 (309)
|.|+||--|.+++.|++...+.+|+++|+++.-++.+++++..+++. .++.+...|.-.. . .+.+..|.|+.+.+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~---~~i~~rlgdGL~~-l-~~~e~~d~ivIAGM 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLE---DRIEVRLGDGLEV-L-KPGEDVDTIVIAGM 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-T---TTEEEEE-SGGGG----GGG---EEEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCc---ccEEEEECCcccc-c-CCCCCCCEEEEecC
Confidence 68999999999999999876778999999999999999999999874 4666655532211 1 11223688777643
Q ss_pred CCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEE
Q 021691 218 TFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSII 271 (309)
Q Consensus 218 ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~ 271 (309)
....+..++......++.. .-++..|.. ....+.+.+.++||....-
T Consensus 76 --GG~lI~~ILe~~~~~~~~~---~~lILqP~~--~~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 76 --GGELIIEILEAGPEKLSSA---KRLILQPNT--HAYELRRWLYENGFEIIDE 122 (205)
T ss_dssp ---HHHHHHHHHHTGGGGTT-----EEEEEESS---HHHHHHHHHHTTEEEEEE
T ss_pred --CHHHHHHHHHhhHHHhccC---CeEEEeCCC--ChHHHHHHHHHCCCEEEEe
Confidence 1222333333333333221 245556654 3356778889999987543
No 227
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.86 E-value=0.00011 Score=62.87 Aligned_cols=100 Identities=21% Similarity=0.201 Sum_probs=77.8
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI 212 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI 212 (309)
.+|.|||++|-|.|++.-.+-+. +..+=+.++.+|++++.++.+.-. ...+|......|.+.....+++.||-|
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~-~p~~H~IiE~hp~V~krmr~~gw~-----ek~nViil~g~WeDvl~~L~d~~FDGI 173 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA-PPDEHWIIEAHPDVLKRMRDWGWR-----EKENVIILEGRWEDVLNTLPDKHFDGI 173 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc-CCcceEEEecCHHHHHHHHhcccc-----cccceEEEecchHhhhccccccCccee
Confidence 46889999999999998876554 455667779999999998875322 245788888889877666667889999
Q ss_pred EEcCCC-CCcccHHHHHHHHHHHHhcCC
Q 021691 213 VASDCT-FFKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 213 i~~d~l-y~~~~~~~ll~~l~~lLk~~G 239 (309)
+- |.+ -.-++...+.+.+.+||||+|
T Consensus 174 ~y-DTy~e~yEdl~~~hqh~~rLLkP~g 200 (271)
T KOG1709|consen 174 YY-DTYSELYEDLRHFHQHVVRLLKPEG 200 (271)
T ss_pred Ee-echhhHHHHHHHHHHHHhhhcCCCc
Confidence 87 554 345677788889999999999
No 228
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.86 E-value=0.00031 Score=65.61 Aligned_cols=120 Identities=16% Similarity=0.171 Sum_probs=84.2
Q ss_pred HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC--------------------------------Cc-------E
Q 021691 120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTE--------------------------------AL-------E 160 (309)
Q Consensus 120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~--------------------------------~~-------~ 160 (309)
..||.-+.....-.++..++|-=||+|.+.+..|.... .+ .
T Consensus 177 etLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~ 256 (381)
T COG0116 177 ETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPI 256 (381)
T ss_pred HHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccce
Confidence 56777777777777778999999999999998766532 01 3
Q ss_pred EEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCc---------ccHHHHHHHH
Q 021691 161 VVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFK---------EFHKDLARII 231 (309)
Q Consensus 161 V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~---------~~~~~ll~~l 231 (309)
++++|+++.+++.|+.|++..|+. ..|.+.+.|...-..+. ..+|+||++. .|.. ..+..+.+++
T Consensus 257 ~~G~Did~r~i~~Ak~NA~~AGv~---d~I~f~~~d~~~l~~~~--~~~gvvI~NP-PYGeRlg~~~~v~~LY~~fg~~l 330 (381)
T COG0116 257 IYGSDIDPRHIEGAKANARAAGVG---DLIEFKQADATDLKEPL--EEYGVVISNP-PYGERLGSEALVAKLYREFGRTL 330 (381)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCC---ceEEEEEcchhhCCCCC--CcCCEEEeCC-CcchhcCChhhHHHHHHHHHHHH
Confidence 779999999999999999999984 56777766554333222 6899999954 4542 1344455566
Q ss_pred HHHHhcCCCeEEEEEe
Q 021691 232 KFLLKKVGPSEALFFS 247 (309)
Q Consensus 232 ~~lLk~~G~~~~ii~~ 247 (309)
++.++.-+ ..++.+
T Consensus 331 k~~~~~ws--~~v~tt 344 (381)
T COG0116 331 KRLLAGWS--RYVFTT 344 (381)
T ss_pred HHHhcCCc--eEEEEc
Confidence 66665444 444443
No 229
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.86 E-value=0.00088 Score=60.17 Aligned_cols=135 Identities=10% Similarity=0.013 Sum_probs=88.9
Q ss_pred CCCCceeecccHHHHHHHHhhCcC----cCCCCeEEEeCCCCChhhHHHHHhcCC--cEEEEEcCCHHHHHHHHHHHHhc
Q 021691 108 DNTGLVCHWPSEDVLAFFSLSHAD----MFRSKRVIELGSGYGLAGLVIAATTEA--LEVVISDGNPQVVDYIQRNVDAN 181 (309)
Q Consensus 108 ~~tG~~~~W~sa~~La~~l~~~~~----~~~g~~VLELG~GtG~~~l~la~~~~~--~~V~~tD~~~~~l~~~~~n~~~n 181 (309)
+..||+=+-.--.+|-+.+..... .-..-+|||+.||.|..-+-+....+. .+|...|.++..++..++-++.+
T Consensus 105 naiGWrGIR~Rk~~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~ 184 (311)
T PF12147_consen 105 NAIGWRGIRQRKVHLEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAER 184 (311)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHc
Confidence 455554233333444444443221 124459999999999776655555554 68999999999999999999999
Q ss_pred cCCCCCCceEEEEeeCCCCC-CCCCCCCccEEEEcCCCCCc---ccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 182 SGAFGGTTVKSMTLHWNQDD-FPYIVDTFDVIVASDCTFFK---EFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 182 ~~~~~~~~v~~~~l~w~~~~-~~~~~~~fDvIi~~d~ly~~---~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
++. ..+++...|.-+.. .......+++++.+..+-.- ......++-+..++.|+| .+|+..
T Consensus 185 gL~---~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG--~lIyTg 249 (311)
T PF12147_consen 185 GLE---DIARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGG--YLIYTG 249 (311)
T ss_pred CCc---cceEEEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCc--EEEEcC
Confidence 984 33466666543321 22345678999998765433 335667888999999999 444433
No 230
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.85 E-value=0.00024 Score=65.40 Aligned_cols=132 Identities=17% Similarity=0.191 Sum_probs=87.7
Q ss_pred CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHh---ccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691 134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDA---NSGAFGGTTVKSMTLHWNQDDFPYIVDTFD 210 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~---n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD 210 (309)
.-++||=||.|-|+....+.+.-+-.+++.+|.+|+|++.+++|... |+-.+...++++..-|-.+.. ......||
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wl-r~a~~~fD 367 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWL-RTAADMFD 367 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHH-Hhhccccc
Confidence 34799999999999999987754468999999999999999976543 555555667766544322111 11235899
Q ss_pred EEEEcCCCC-Cccc-----HHHHHHHHHHHHhcCCCeEEEEEeec---CCchHHHHHHHHHhCCCeEE
Q 021691 211 VIVASDCTF-FKEF-----HKDLARIIKFLLKKVGPSEALFFSPK---RGDSLDKFLEEIEGNHLHFS 269 (309)
Q Consensus 211 vIi~~d~ly-~~~~-----~~~ll~~l~~lLk~~G~~~~ii~~~~---r~~~~~~f~~~~~~~G~~~~ 269 (309)
+||. |..- .... -..+-..+++.|+++| .+++.+.. .+..+......++++|+.+-
T Consensus 368 ~vIV-Dl~DP~tps~~rlYS~eFY~ll~~~l~e~G--l~VvQags~y~tp~vfw~i~aTik~AG~~~~ 432 (508)
T COG4262 368 VVIV-DLPDPSTPSIGRLYSVEFYRLLSRHLAETG--LMVVQAGSPYFTPRVFWRIDATIKSAGYRVW 432 (508)
T ss_pred EEEE-eCCCCCCcchhhhhhHHHHHHHHHhcCcCc--eEEEecCCCccCCceeeeehhHHHhCcceee
Confidence 9998 3221 1111 1334566778888889 55655533 24455556677889998764
No 231
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.83 E-value=0.0013 Score=61.74 Aligned_cols=133 Identities=17% Similarity=0.138 Sum_probs=86.2
Q ss_pred CcCCCCeEEEeCCCCChhhHHHHHhcCC--cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC-CCCCCC
Q 021691 131 DMFRSKRVIELGSGYGLAGLVIAATTEA--LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD-FPYIVD 207 (309)
Q Consensus 131 ~~~~g~~VLELG~GtG~~~l~la~~~~~--~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~-~~~~~~ 207 (309)
+..+|.+|||+-++.|.=+..+|..... ..|++.|.++.=+..++.|+..-|.. ++.+...|-.... ......
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~----nv~~~~~d~~~~~~~~~~~~ 228 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR----NVIVVNKDARRLAELLPGGE 228 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC----ceEEEecccccccccccccC
Confidence 4567899999999998777777777653 56799999999999999999998873 3444443322111 111223
Q ss_pred CccEEEEcCCCCC-----------------------cccHHHHHHHHHHHHhcCCCeEEEEEeecC--CchHHHHHHHHH
Q 021691 208 TFDVIVASDCTFF-----------------------KEFHKDLARIIKFLLKKVGPSEALFFSPKR--GDSLDKFLEEIE 262 (309)
Q Consensus 208 ~fDvIi~~d~ly~-----------------------~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r--~~~~~~f~~~~~ 262 (309)
+||.|+. |+.-. ......++....++||+|| .++++++.- .+..+.....++
T Consensus 229 ~fD~iLl-DaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG--~LVYSTCS~~~eENE~vV~~~L~ 305 (355)
T COG0144 229 KFDRILL-DAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGG--VLVYSTCSLTPEENEEVVERFLE 305 (355)
T ss_pred cCcEEEE-CCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCC--EEEEEccCCchhcCHHHHHHHHH
Confidence 6999998 42211 0124568889999999999 666666543 223233334444
Q ss_pred hC-CCeEEE
Q 021691 263 GN-HLHFSI 270 (309)
Q Consensus 263 ~~-G~~~~~ 270 (309)
+. ++..+.
T Consensus 306 ~~~~~~~~~ 314 (355)
T COG0144 306 RHPDFELEP 314 (355)
T ss_pred hCCCceeec
Confidence 44 444443
No 232
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.81 E-value=4.8e-05 Score=64.34 Aligned_cols=53 Identities=21% Similarity=0.086 Sum_probs=39.2
Q ss_pred ccHHHHHHHHhhCcCcC--CCCeEEEeCCCCChhhHHHHHhc-CCcEEEEEcCCHH
Q 021691 117 PSEDVLAFFSLSHADMF--RSKRVIELGSGYGLAGLVIAATT-EALEVVISDGNPQ 169 (309)
Q Consensus 117 ~sa~~La~~l~~~~~~~--~g~~VLELG~GtG~~~l~la~~~-~~~~V~~tD~~~~ 169 (309)
.|+..|.+......-+. .+.+||||||++|..+..++... .+.+|+++|..+.
T Consensus 4 Ra~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 4 RAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp THHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred HHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 45677777766654233 34899999999999999987764 3579999998765
No 233
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.77 E-value=0.00031 Score=63.12 Aligned_cols=116 Identities=13% Similarity=0.182 Sum_probs=74.8
Q ss_pred HHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC
Q 021691 119 EDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN 198 (309)
Q Consensus 119 a~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~ 198 (309)
...+++.+.+.....++..|||+|+|+|.++..+++. +.+|+++|.++.+.+.+++.... ..++.+...|.-
T Consensus 15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~--~~~v~~vE~d~~~~~~L~~~~~~------~~~~~vi~~D~l 86 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKR--GKRVIAVEIDPDLAKHLKERFAS------NPNVEVINGDFL 86 (262)
T ss_dssp HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH--SSEEEEEESSHHHHHHHHHHCTT------CSSEEEEES-TT
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc--cCcceeecCcHhHHHHHHHHhhh------cccceeeecchh
Confidence 3556666666666668999999999999999999988 38999999999999999986552 245666666554
Q ss_pred CCCCCC-CCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691 199 QDDFPY-IVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFF 246 (309)
Q Consensus 199 ~~~~~~-~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~ 246 (309)
..+... .......|+++- .|... ..++..+...-+ -|...++++
T Consensus 87 ~~~~~~~~~~~~~~vv~Nl-Py~is--~~il~~ll~~~~-~g~~~~~l~ 131 (262)
T PF00398_consen 87 KWDLYDLLKNQPLLVVGNL-PYNIS--SPILRKLLELYR-FGRVRMVLM 131 (262)
T ss_dssp TSCGGGHCSSSEEEEEEEE-TGTGH--HHHHHHHHHHGG-GCEEEEEEE
T ss_pred ccccHHhhcCCceEEEEEe-cccch--HHHHHHHhhccc-ccccceEEE
Confidence 333221 123456777764 45332 345554444333 343334443
No 234
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.72 E-value=0.0013 Score=56.93 Aligned_cols=149 Identities=13% Similarity=0.129 Sum_probs=90.5
Q ss_pred CceeecccHH-HHHHHHhhC---cCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCC
Q 021691 111 GLVCHWPSED-VLAFFSLSH---ADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAF 185 (309)
Q Consensus 111 G~~~~W~sa~-~La~~l~~~---~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~ 185 (309)
+++ +|..-. .||..+..- ..+.+|.+||=||+.+|..--.++-..+ .+.|++++.++.....+-.-++..
T Consensus 47 eYR-~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---- 121 (229)
T PF01269_consen 47 EYR-VWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---- 121 (229)
T ss_dssp EEE-EE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS----
T ss_pred cee-ecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC----
Confidence 556 897643 466666543 3567899999999999977666777766 679999999997766654333321
Q ss_pred CCCceEEEEeeCCCCC-CCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC--------CchHHH
Q 021691 186 GGTTVKSMTLHWNQDD-FPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR--------GDSLDK 256 (309)
Q Consensus 186 ~~~~v~~~~l~w~~~~-~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r--------~~~~~~ 256 (309)
.++-...-|-..+. ....-+..|+|++ |+. .++..+-+......+||++| .++++-..+ ...+..
T Consensus 122 --~NIiPIl~DAr~P~~Y~~lv~~VDvI~~-DVa-Qp~Qa~I~~~Na~~fLk~gG--~~~i~iKa~siD~t~~p~~vf~~ 195 (229)
T PF01269_consen 122 --PNIIPILEDARHPEKYRMLVEMVDVIFQ-DVA-QPDQARIAALNARHFLKPGG--HLIISIKARSIDSTADPEEVFAE 195 (229)
T ss_dssp --TTEEEEES-TTSGGGGTTTS--EEEEEE-E-S-STTHHHHHHHHHHHHEEEEE--EEEEEEEHHHH-SSSSHHHHHHH
T ss_pred --CceeeeeccCCChHHhhcccccccEEEe-cCC-ChHHHHHHHHHHHhhccCCc--EEEEEEecCcccCcCCHHHHHHH
Confidence 23333333222211 1123468999998 766 45667788899999999999 454443221 122334
Q ss_pred HHHHHHhCCCeEEE
Q 021691 257 FLEEIEGNHLHFSI 270 (309)
Q Consensus 257 f~~~~~~~G~~~~~ 270 (309)
-.+.+++.||+...
T Consensus 196 e~~~L~~~~~~~~e 209 (229)
T PF01269_consen 196 EVKKLKEEGFKPLE 209 (229)
T ss_dssp HHHHHHCTTCEEEE
T ss_pred HHHHHHHcCCChhe
Confidence 45567777888744
No 235
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.71 E-value=0.00015 Score=65.99 Aligned_cols=130 Identities=18% Similarity=0.187 Sum_probs=89.3
Q ss_pred CCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCC
Q 021691 110 TGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGT 188 (309)
Q Consensus 110 tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~ 188 (309)
.|++++++.+-.++-.++. ..+|.+|||+.||.|.=+..+|...+ .+.|++.|.++.-+..++.|+...|..
T Consensus 64 ~G~~~vQd~sS~l~~~~L~---~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~---- 136 (283)
T PF01189_consen 64 NGLFYVQDESSQLVALALD---PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF---- 136 (283)
T ss_dssp TTSEEEHHHHHHHHHHHHT---TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S----
T ss_pred CCcEEeccccccccccccc---ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc----
Confidence 4777788887777666553 34788999999999988888888766 579999999999999999999988773
Q ss_pred ceEEEEeeCCCCCCCCCCCCccEEEEcC-CCC-----Cc----------------ccHHHHHHHHHHHH----hcCCCeE
Q 021691 189 TVKSMTLHWNQDDFPYIVDTFDVIVASD-CTF-----FK----------------EFHKDLARIIKFLL----KKVGPSE 242 (309)
Q Consensus 189 ~v~~~~l~w~~~~~~~~~~~fDvIi~~d-~ly-----~~----------------~~~~~ll~~l~~lL----k~~G~~~ 242 (309)
.+.+...|............||.|+.-. |.- .. .....+++...+++ ++|| .
T Consensus 137 ~v~~~~~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG--~ 214 (283)
T PF01189_consen 137 NVIVINADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGG--R 214 (283)
T ss_dssp SEEEEESHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEE--E
T ss_pred eEEEEeeccccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCC--e
Confidence 4444432221111011223699999822 211 11 11345788888999 9999 6
Q ss_pred EEEEee
Q 021691 243 ALFFSP 248 (309)
Q Consensus 243 ~ii~~~ 248 (309)
++++++
T Consensus 215 lvYsTC 220 (283)
T PF01189_consen 215 LVYSTC 220 (283)
T ss_dssp EEEEES
T ss_pred EEEEec
Confidence 666664
No 236
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.71 E-value=0.0007 Score=58.34 Aligned_cols=134 Identities=19% Similarity=0.131 Sum_probs=87.9
Q ss_pred ccHHHHHHHHhhCcCcCC----CCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEE
Q 021691 117 PSEDVLAFFSLSHADMFR----SKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKS 192 (309)
Q Consensus 117 ~sa~~La~~l~~~~~~~~----g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~ 192 (309)
+++.+|.+|+........ ..++||+||=+....+. ..+--.|+.+|.++.- -.+
T Consensus 30 dSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~~-------------------~~I 87 (219)
T PF11968_consen 30 DSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQH-------------------PGI 87 (219)
T ss_pred chhHHHHHHhhhhccccccccccceEEeecccCCCCccc---ccCceeeEEeecCCCC-------------------CCc
Confidence 567888999887543222 25999999975443322 2344579999986521 122
Q ss_pred EEeeCCCCCCC-CCCCCccEEEEcCCCCCc---ccHHHHHHHHHHHHhcCCC---eEEEEEee------cCCchHHHHHH
Q 021691 193 MTLHWNQDDFP-YIVDTFDVIVASDCTFFK---EFHKDLARIIKFLLKKVGP---SEALFFSP------KRGDSLDKFLE 259 (309)
Q Consensus 193 ~~l~w~~~~~~-~~~~~fDvIi~~d~ly~~---~~~~~ll~~l~~lLk~~G~---~~~ii~~~------~r~~~~~~f~~ 259 (309)
.+-|+-+-..+ ...+.||+|.++-++-+. .....+++...++|+++|. ..+++..| .|--+.+.|.+
T Consensus 88 ~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~ 167 (219)
T PF11968_consen 88 LQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLRE 167 (219)
T ss_pred eeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHH
Confidence 23333333332 235789999999888664 4577899999999999994 11444443 24456678999
Q ss_pred HHHhCCCeEEEEe
Q 021691 260 EIEGNHLHFSIIE 272 (309)
Q Consensus 260 ~~~~~G~~~~~~~ 272 (309)
.+...||.....+
T Consensus 168 im~~LGf~~~~~~ 180 (219)
T PF11968_consen 168 IMESLGFTRVKYK 180 (219)
T ss_pred HHHhCCcEEEEEE
Confidence 9999999875543
No 237
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.68 E-value=0.0022 Score=59.27 Aligned_cols=116 Identities=17% Similarity=0.213 Sum_probs=68.5
Q ss_pred cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691 132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV 211 (309)
Q Consensus 132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv 211 (309)
+.+|+++|||||++|..+..+++. +.+|+++|..+ | ..++..+ .+|.....+--... + ....+|+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~-l----~~~L~~~------~~V~h~~~d~fr~~-p-~~~~vDw 273 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGP-M----AQSLMDT------GQVEHLRADGFKFR-P-PRKNVDW 273 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechh-c----CHhhhCC------CCEEEEeccCcccC-C-CCCCCCE
Confidence 468999999999999999998886 45999999543 2 2222222 23443333221111 1 1468999
Q ss_pred EEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee-----cCCchHHHHH----HHHHhCCCe
Q 021691 212 IVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP-----KRGDSLDKFL----EEIEGNHLH 267 (309)
Q Consensus 212 Ii~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~-----~r~~~~~~f~----~~~~~~G~~ 267 (309)
++| |+.-.+ ..+.+.+.+.|..+- ..-.++.- .|.++...++ +.+.++|..
T Consensus 274 vVc-Dmve~P---~rva~lm~~Wl~~g~-cr~aIfnLKlpmk~r~~~v~~~l~~i~~~l~~~g~~ 333 (357)
T PRK11760 274 LVC-DMVEKP---ARVAELMAQWLVNGW-CREAIFNLKLPMKKRYEEVRQCLELIEEQLDENGIN 333 (357)
T ss_pred EEE-ecccCH---HHHHHHHHHHHhcCc-ccEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 999 776444 456677777776552 23333332 2333334443 445566764
No 238
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.00037 Score=60.73 Aligned_cols=111 Identities=19% Similarity=0.079 Sum_probs=74.0
Q ss_pred ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHH-HHHHHHHhccCCCCCCceEEE
Q 021691 115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVD-YIQRNVDANSGAFGGTTVKSM 193 (309)
Q Consensus 115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~-~~~~n~~~n~~~~~~~~v~~~ 193 (309)
+=.++..|...+....-.++|+.|||+|+-||.++..+.. .|+.+|+++|..-.-+. .+|. ..+|.+.
T Consensus 60 VSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq-~gAk~VyavDVG~~Ql~~kLR~----------d~rV~~~ 128 (245)
T COG1189 60 VSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQ-RGAKHVYAVDVGYGQLHWKLRN----------DPRVIVL 128 (245)
T ss_pred cccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHH-cCCcEEEEEEccCCccCHhHhc----------CCcEEEE
Confidence 5667888998888887778999999999999999987555 68999999997542221 1111 1222222
Q ss_pred -EeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691 194 -TLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 194 -~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G 239 (309)
..+...-......+..|++++ |+-|. ....++..+..++++++
T Consensus 129 E~tN~r~l~~~~~~~~~d~~v~-DvSFI--SL~~iLp~l~~l~~~~~ 172 (245)
T COG1189 129 ERTNVRYLTPEDFTEKPDLIVI-DVSFI--SLKLILPALLLLLKDGG 172 (245)
T ss_pred ecCChhhCCHHHcccCCCeEEE-Eeehh--hHHHHHHHHHHhcCCCc
Confidence 111111111122347899998 65544 35678888999999988
No 239
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.0014 Score=56.25 Aligned_cols=130 Identities=16% Similarity=0.059 Sum_probs=85.3
Q ss_pred cccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCC-cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691 116 WPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEA-LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT 194 (309)
Q Consensus 116 W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~-~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ 194 (309)
=-|+..|.+....+.-+.+|.+|+||||-.|..+..+++..+. .+|+++|+.|-- . ...|...+
T Consensus 27 SRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~----~~~V~~iq 91 (205)
T COG0293 27 SRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------P----IPGVIFLQ 91 (205)
T ss_pred chHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------c----CCCceEEe
Confidence 4567777777776644456799999999999999998888765 359999987621 1 12366666
Q ss_pred eeCCCCCCC------CCCCCccEEEEcCCCCCc------------ccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHH
Q 021691 195 LHWNQDDFP------YIVDTFDVIVASDCTFFK------------EFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDK 256 (309)
Q Consensus 195 l~w~~~~~~------~~~~~fDvIi~~d~ly~~------------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~ 256 (309)
.|...++.. ....++|+|++ |..-.. ..-..++.....+|+++| .++.-..++...+.
T Consensus 92 ~d~~~~~~~~~l~~~l~~~~~DvV~s-D~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G---~fv~K~fqg~~~~~ 167 (205)
T COG0293 92 GDITDEDTLEKLLEALGGAPVDVVLS-DMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGG---SFVAKVFQGEDFED 167 (205)
T ss_pred eeccCccHHHHHHHHcCCCCcceEEe-cCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCC---eEEEEEEeCCCHHH
Confidence 666655432 12345799997 433211 122345566677899999 33444445566677
Q ss_pred HHHHHHhC
Q 021691 257 FLEEIEGN 264 (309)
Q Consensus 257 f~~~~~~~ 264 (309)
++..+++.
T Consensus 168 ~l~~~~~~ 175 (205)
T COG0293 168 LLKALRRL 175 (205)
T ss_pred HHHHHHHh
Confidence 88888765
No 240
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.63 E-value=0.00016 Score=58.75 Aligned_cols=50 Identities=28% Similarity=0.345 Sum_probs=43.1
Q ss_pred CCCCeEEEeCCCCChhhHHHHHh----cCCcEEEEEcCCHHHHHHHHHHHHhcc
Q 021691 133 FRSKRVIELGSGYGLAGLVIAAT----TEALEVVISDGNPQVVDYIQRNVDANS 182 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~----~~~~~V~~tD~~~~~l~~~~~n~~~n~ 182 (309)
.+..+|+|+|||-|.++..++.. ....+|+++|.++..++.+++..+..+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 56789999999999999999882 156799999999999999988887765
No 241
>PRK10742 putative methyltransferase; Provisional
Probab=97.57 E-value=0.00034 Score=61.75 Aligned_cols=108 Identities=15% Similarity=0.157 Sum_probs=68.7
Q ss_pred HHHHHHHhhCcCcCCCC--eEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCC--CC---CCceEE
Q 021691 120 DVLAFFSLSHADMFRSK--RVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGA--FG---GTTVKS 192 (309)
Q Consensus 120 ~~La~~l~~~~~~~~g~--~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~--~~---~~~v~~ 192 (309)
+.|++-+ .+.+|. +|||+-+|+|..++.+|.. | .+|+++|.++.+...++.+++..... .. ..++++
T Consensus 76 ~~l~kAv----glk~g~~p~VLD~TAGlG~Da~~las~-G-~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l 149 (250)
T PRK10742 76 EAVAKAV----GIKGDYLPDVVDATAGLGRDAFVLASV-G-CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQL 149 (250)
T ss_pred cHHHHHh----CCCCCCCCEEEECCCCccHHHHHHHHc-C-CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEE
Confidence 4455443 344566 8999999999999998876 4 46999999999999999999873211 00 023333
Q ss_pred EEeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHH
Q 021691 193 MTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLL 235 (309)
Q Consensus 193 ~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lL 235 (309)
...+-.... .....+||+|+. |+.|-.....++.+.=-+++
T Consensus 150 ~~~da~~~L-~~~~~~fDVVYl-DPMfp~~~ksa~vkk~mr~~ 190 (250)
T PRK10742 150 IHASSLTAL-TDITPRPQVVYL-DPMFPHKQKSALVKKEMRVF 190 (250)
T ss_pred EeCcHHHHH-hhCCCCCcEEEE-CCCCCCCccccchhhhHHHH
Confidence 332211111 112347999998 88888666555443333333
No 242
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.56 E-value=0.0022 Score=50.54 Aligned_cols=102 Identities=19% Similarity=0.212 Sum_probs=63.4
Q ss_pred EEEeCCCCChhhHHHHHhcCC-cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCC-CCccEEEEc
Q 021691 138 VIELGSGYGLAGLVIAATTEA-LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIV-DTFDVIVAS 215 (309)
Q Consensus 138 VLELG~GtG~~~l~la~~~~~-~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~-~~fDvIi~~ 215 (309)
++|+|||+|... .++...+. ..++++|.++.++...+..... ... ..+.....+......+... ..||++ ..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~-~~ 125 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGL---GLVDFVVADALGGVLPFEDSASFDLV-IS 125 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCC---CceEEEEeccccCCCCCCCCCceeEE-ee
Confidence 999999999876 43444322 3899999999999985444332 210 1134444444332123333 479999 54
Q ss_pred CCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 216 DCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 216 d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
...++.......+..+.+.++++| .+++..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~g--~~~~~~ 155 (257)
T COG0500 126 LLVLHLLPPAKALRELLRVLKPGG--RLVLSD 155 (257)
T ss_pred eeehhcCCHHHHHHHHHHhcCCCc--EEEEEe
Confidence 444333337889999999999988 444443
No 243
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.48 E-value=0.0019 Score=56.96 Aligned_cols=126 Identities=15% Similarity=0.154 Sum_probs=82.7
Q ss_pred ecccHHH--HHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEE
Q 021691 115 HWPSEDV--LAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKS 192 (309)
Q Consensus 115 ~W~sa~~--La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~ 192 (309)
-||-.-+ +.+++...+ ....|-|+|||-+-++. . ...+|...|..+ .| .+|.+
T Consensus 162 kWP~nPld~ii~~ik~r~---~~~vIaD~GCGEakiA~---~--~~~kV~SfDL~a-----------~~------~~V~~ 216 (325)
T KOG3045|consen 162 KWPENPLDVIIRKIKRRP---KNIVIADFGCGEAKIAS---S--ERHKVHSFDLVA-----------VN------ERVIA 216 (325)
T ss_pred hCCCChHHHHHHHHHhCc---CceEEEecccchhhhhh---c--cccceeeeeeec-----------CC------Cceee
Confidence 3665332 455554442 45678899999886543 1 134788888532 11 12222
Q ss_pred EEeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee-cCCchHHHHHHHHHhCCCeEEEE
Q 021691 193 MTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP-KRGDSLDKFLEEIEGNHLHFSII 271 (309)
Q Consensus 193 ~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~-~r~~~~~~f~~~~~~~G~~~~~~ 271 (309)
. |. ...+..+++.|+++..-.+. ..++..++.++.++|++|| .+.+... .|-.....|.+.+...||.+...
T Consensus 217 c--Dm--~~vPl~d~svDvaV~CLSLM-gtn~~df~kEa~RiLk~gG--~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~ 289 (325)
T KOG3045|consen 217 C--DM--RNVPLEDESVDVAVFCLSLM-GTNLADFIKEANRILKPGG--LLYIAEVKSRFSDVKGFVRALTKLGFDVKHK 289 (325)
T ss_pred c--cc--cCCcCccCcccEEEeeHhhh-cccHHHHHHHHHHHhccCc--eEEEEehhhhcccHHHHHHHHHHcCCeeeeh
Confidence 2 21 33566678999998865544 3467889999999999999 5555443 45566778999999999998765
Q ss_pred e
Q 021691 272 E 272 (309)
Q Consensus 272 ~ 272 (309)
.
T Consensus 290 d 290 (325)
T KOG3045|consen 290 D 290 (325)
T ss_pred h
Confidence 4
No 244
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.43 E-value=0.0044 Score=53.49 Aligned_cols=124 Identities=19% Similarity=0.174 Sum_probs=82.9
Q ss_pred CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691 134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV 213 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi 213 (309)
++.++.|+||--|.+..++.+..++..+++.|+++..++.+.+|+..+++. .++++...|.-. .-..+..+|+|+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~---~~i~vr~~dgl~--~l~~~d~~d~iv 90 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLS---ERIDVRLGDGLA--VLELEDEIDVIV 90 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCc---ceEEEeccCCcc--ccCccCCcCEEE
Confidence 355699999999999999999888899999999999999999999999884 566666664421 112345789988
Q ss_pred EcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEE
Q 021691 214 ASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFS 269 (309)
Q Consensus 214 ~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~ 269 (309)
.+.+ ....+..+++.-..-|+.-. . ++..|.. ....+.+.+.+++|...
T Consensus 91 IAGM--GG~lI~~ILee~~~~l~~~~--r-lILQPn~--~~~~LR~~L~~~~~~I~ 139 (226)
T COG2384 91 IAGM--GGTLIREILEEGKEKLKGVE--R-LILQPNI--HTYELREWLSANSYEIK 139 (226)
T ss_pred EeCC--cHHHHHHHHHHhhhhhcCcc--e-EEECCCC--CHHHHHHHHHhCCceee
Confidence 7654 12234444444444443221 3 3444433 12345555666666654
No 245
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.35 E-value=0.00014 Score=69.72 Aligned_cols=101 Identities=16% Similarity=0.184 Sum_probs=62.3
Q ss_pred CeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHh-ccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEE
Q 021691 136 KRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDA-NSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVA 214 (309)
Q Consensus 136 ~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~-n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~ 214 (309)
+.+||+|||+|.+|-.+..+ .|+.+-..+.-...++..+.+ .|+ .+...-.+....+.+.+.||+|=|
T Consensus 119 R~~LDvGcG~aSF~a~l~~r----~V~t~s~a~~d~~~~qvqfaleRGv-------pa~~~~~~s~rLPfp~~~fDmvHc 187 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER----NVTTMSFAPNDEHEAQVQFALERGV-------PAMIGVLGSQRLPFPSNAFDMVHC 187 (506)
T ss_pred EEEEeccceeehhHHHHhhC----CceEEEcccccCCchhhhhhhhcCc-------chhhhhhccccccCCccchhhhhc
Confidence 47899999999999887664 344443333211112211111 232 111111223456778899999999
Q ss_pred cCCCCCccc-HHHHHHHHHHHHhcCCCeEEEEEeec
Q 021691 215 SDCTFFKEF-HKDLARIIKFLLKKVGPSEALFFSPK 249 (309)
Q Consensus 215 ~d~ly~~~~-~~~ll~~l~~lLk~~G~~~~ii~~~~ 249 (309)
+.|+-.... -.-++-.+.|+|+||| .+++.++.
T Consensus 188 src~i~W~~~~g~~l~evdRvLRpGG--yfv~S~pp 221 (506)
T PF03141_consen 188 SRCLIPWHPNDGFLLFEVDRVLRPGG--YFVLSGPP 221 (506)
T ss_pred ccccccchhcccceeehhhhhhccCc--eEEecCCc
Confidence 998765322 2457789999999999 77777654
No 246
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.27 E-value=0.0058 Score=55.32 Aligned_cols=123 Identities=17% Similarity=0.107 Sum_probs=78.0
Q ss_pred eEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEcC
Q 021691 137 RVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASD 216 (309)
Q Consensus 137 ~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d 216 (309)
+|+||.||.|.+++.+.. .|...|.++|.++.+++..++|....-. ... +..++.. .....+|+|+++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~-~G~~~v~a~e~~~~a~~~~~~N~~~~~~---~~D--i~~~~~~-----~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEK-AGFEIVAANEIDKSAAETYEANFPNKLI---EGD--ITKIDEK-----DFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHH-cCCEEEEEEeCCHHHHHHHHHhCCCCCc---cCc--cccCchh-----hcCCCCCEEEeCC
Confidence 699999999999887655 4666789999999999999888642211 111 1111111 1134699999977
Q ss_pred CCCC----------cccHHHHHHHHHHHHhcCCCeEEEEEeec------CCchHHHHHHHHHhCCCeEEE
Q 021691 217 CTFF----------KEFHKDLARIIKFLLKKVGPSEALFFSPK------RGDSLDKFLEEIEGNHLHFSI 270 (309)
Q Consensus 217 ~ly~----------~~~~~~ll~~l~~lLk~~G~~~~ii~~~~------r~~~~~~f~~~~~~~G~~~~~ 270 (309)
+.-. .+....|+..+.++++.-.+..+++-... ....+..+.+.+++.|+.+..
T Consensus 71 PCq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~ 140 (275)
T cd00315 71 PCQPFSIAGKRKGFEDTRGTLFFEIIRILKEKKPKYFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYW 140 (275)
T ss_pred CChhhhHHhhcCCCCCchHHHHHHHHHHHHhcCCCEEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEE
Confidence 5532 12344467677777765544333332221 134577888899999988754
No 247
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.13 E-value=0.00099 Score=62.68 Aligned_cols=97 Identities=16% Similarity=0.169 Sum_probs=64.3
Q ss_pred eEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCC-CCCccEEEEc
Q 021691 137 RVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYI-VDTFDVIVAS 215 (309)
Q Consensus 137 ~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~-~~~fDvIi~~ 215 (309)
-|||+|+|||++++.++. .++..|++.+.=..|.+.+++-...|+.. .++.+..-.=. +.... ....|+++..
T Consensus 69 ~vLdigtGTGLLSmMAvr-agaD~vtA~EvfkPM~d~arkI~~kng~S---dkI~vInkrSt--ev~vg~~~RadI~v~e 142 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVR-AGADSVTACEVFKPMVDLARKIMHKNGMS---DKINVINKRST--EVKVGGSSRADIAVRE 142 (636)
T ss_pred EEEEccCCccHHHHHHHH-hcCCeEEeehhhchHHHHHHHHHhcCCCc---cceeeeccccc--eeeecCcchhhhhhHh
Confidence 689999999999998555 57889999999999999999999999985 34544332111 11111 1235666654
Q ss_pred CCCC---CcccHHHHHHHHHHHHhcCC
Q 021691 216 DCTF---FKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 216 d~ly---~~~~~~~ll~~l~~lLk~~G 239 (309)
+..- ....++.+-....+|++++.
T Consensus 143 ~fdtEligeGalps~qhAh~~L~~~nc 169 (636)
T KOG1501|consen 143 DFDTELIGEGALPSLQHAHDMLLVDNC 169 (636)
T ss_pred hhhhhhhccccchhHHHHHHHhcccCC
Confidence 3211 12345556666667777765
No 248
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.13 E-value=6.1e-05 Score=57.83 Aligned_cols=101 Identities=16% Similarity=0.033 Sum_probs=36.9
Q ss_pred EEeCCCCChhhHHHHHhcCC---cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEc
Q 021691 139 IELGSGYGLAGLVIAATTEA---LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVAS 215 (309)
Q Consensus 139 LELG~GtG~~~l~la~~~~~---~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~ 215 (309)
||+|+..|..++.+++.+.. .+++++|..+. .+..++.++..+.. .++++...+-.+........+||+|+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~---~~~~~~~g~s~~~l~~~~~~~~dli~i- 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLS---DRVEFIQGDSPDFLPSLPDGPIDLIFI- 75 (106)
T ss_dssp --------------------------EEEESS-------------GGG----BTEEEEES-THHHHHHHHH--EEEEEE-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCC---CeEEEEEcCcHHHHHHcCCCCEEEEEE-
Confidence 69999999888877765443 37999999885 33444444444432 234444432211100111368999998
Q ss_pred CCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 216 DCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 216 d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
|.-|..+....-+..+...|+++| +++++
T Consensus 76 Dg~H~~~~~~~dl~~~~~~l~~gg---viv~d 104 (106)
T PF13578_consen 76 DGDHSYEAVLRDLENALPRLAPGG---VIVFD 104 (106)
T ss_dssp ES---HHHHHHHHHHHGGGEEEEE---EEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCe---EEEEe
Confidence 776666677777888888899988 55543
No 249
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.09 E-value=0.026 Score=50.78 Aligned_cols=134 Identities=22% Similarity=0.108 Sum_probs=83.1
Q ss_pred CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCC-CC--------------------CceEE
Q 021691 134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAF-GG--------------------TTVKS 192 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~-~~--------------------~~v~~ 192 (309)
...+||==|||.|.++..+|+. +..|.+.|.|--|+=..+ .-.|+... .. ..+.+
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~--fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~i 131 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASN--FILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRI 131 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHH--HHHcccCCCCcEEEecceecccCCCCHHHhCCceEe
Confidence 4569999999999999999987 679999999988854443 33333110 00 00111
Q ss_pred E--------------EeeCCCCC--CCC--CCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeec----C
Q 021691 193 M--------------TLHWNQDD--FPY--IVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK----R 250 (309)
Q Consensus 193 ~--------------~l~w~~~~--~~~--~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~----r 250 (309)
- .+.+++-. ... ..++||+|+.+--+--...+-..++++.++||||| .-|=+.|. .
T Consensus 132 PDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG--~WIN~GPLlyh~~ 209 (270)
T PF07942_consen 132 PDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGG--YWINFGPLLYHFE 209 (270)
T ss_pred CCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCC--EEEecCCccccCC
Confidence 0 00001000 001 13689999886222224557788899999999999 33323321 1
Q ss_pred ----------CchHHHHHHHHHhCCCeEEEEec
Q 021691 251 ----------GDSLDKFLEEIEGNHLHFSIIEN 273 (309)
Q Consensus 251 ----------~~~~~~f~~~~~~~G~~~~~~~~ 273 (309)
.-+.+++...+++.||++...+.
T Consensus 210 ~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 210 PMSIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 22567899999999999876543
No 250
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.05 E-value=0.048 Score=46.61 Aligned_cols=148 Identities=16% Similarity=0.183 Sum_probs=93.4
Q ss_pred ceeecccHH-HHHHHHhhC---cCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHh-ccCCCC
Q 021691 112 LVCHWPSED-VLAFFSLSH---ADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDA-NSGAFG 186 (309)
Q Consensus 112 ~~~~W~sa~-~La~~l~~~---~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~-n~~~~~ 186 (309)
++ .|+.-. .||.-++.- ..+.+|.+||=||+-+|..--.++-..+.+.+++++.++.+...+-.-++. +++
T Consensus 51 YR-~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni--- 126 (231)
T COG1889 51 YR-EWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNI--- 126 (231)
T ss_pred ee-eeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCc---
Confidence 45 898743 365555542 346689999999999998877778888878899999999887765544433 222
Q ss_pred CCceEEEEeeCCCCC-CCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC--------CchHHHH
Q 021691 187 GTTVKSMTLHWNQDD-FPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR--------GDSLDKF 257 (309)
Q Consensus 187 ~~~v~~~~l~w~~~~-~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r--------~~~~~~f 257 (309)
-...-|-..+. ....-+..|+|+. |+.. +...+-+.......|+++| .+++.-.-| ...+++-
T Consensus 127 ----~PIL~DA~~P~~Y~~~Ve~VDviy~-DVAQ-p~Qa~I~~~Na~~FLk~~G--~~~i~iKArSIdvT~dp~~vf~~e 198 (231)
T COG1889 127 ----IPILEDARKPEKYRHLVEKVDVIYQ-DVAQ-PNQAEILADNAEFFLKKGG--YVVIAIKARSIDVTADPEEVFKDE 198 (231)
T ss_pred ----eeeecccCCcHHhhhhcccccEEEE-ecCC-chHHHHHHHHHHHhcccCC--eEEEEEEeecccccCCHHHHHHHH
Confidence 11111111111 1122356888887 5543 4556778899999999999 444433222 1233444
Q ss_pred HHHHHhCCCeEEEE
Q 021691 258 LEEIEGNHLHFSII 271 (309)
Q Consensus 258 ~~~~~~~G~~~~~~ 271 (309)
.+.+++.||.+...
T Consensus 199 v~kL~~~~f~i~e~ 212 (231)
T COG1889 199 VEKLEEGGFEILEV 212 (231)
T ss_pred HHHHHhcCceeeEE
Confidence 56677888876443
No 251
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.01 E-value=0.0024 Score=58.41 Aligned_cols=105 Identities=21% Similarity=0.186 Sum_probs=68.9
Q ss_pred ccccCCCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHH-------HHHH
Q 021691 104 RCNIDNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVD-------YIQR 176 (309)
Q Consensus 104 ~~~~~~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~-------~~~~ 176 (309)
|.=+|+|-. +|++ +-.+.+.....+|+-|.|=-.|||.+-+.+|. + ++.|+|+|++-.++. .++.
T Consensus 184 R~yiGnTSm----DAeL--Sli~AN~Amv~pGdivyDPFVGTGslLvsaa~-F-Ga~viGtDIDyr~vragrg~~~si~a 255 (421)
T KOG2671|consen 184 RCYIGNTSM----DAEL--SLIMANQAMVKPGDIVYDPFVGTGSLLVSAAH-F-GAYVIGTDIDYRTVRAGRGEDESIKA 255 (421)
T ss_pred ccccCCccc----chhH--HHHHhhhhccCCCCEEecCccccCceeeehhh-h-cceeeccccchheeecccCCCcchhH
Confidence 444688854 4443 33444555667899999999999988777555 4 569999999998887 4556
Q ss_pred HHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCC
Q 021691 177 NVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFF 220 (309)
Q Consensus 177 n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~ 220 (309)
|.+.-+... .-+.+...|........ ...||.|+| |+.|.
T Consensus 256 NFkQYg~~~--~fldvl~~D~sn~~~rs-n~~fDaIvc-DPPYG 295 (421)
T KOG2671|consen 256 NFKQYGSSS--QFLDVLTADFSNPPLRS-NLKFDAIVC-DPPYG 295 (421)
T ss_pred hHHHhCCcc--hhhheeeecccCcchhh-cceeeEEEe-CCCcc
Confidence 666655421 12334444443332222 467999999 88876
No 252
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.96 E-value=0.009 Score=53.87 Aligned_cols=99 Identities=18% Similarity=0.156 Sum_probs=59.6
Q ss_pred CeEEEeCCCC-ChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHH-hccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691 136 KRVIELGSGY-GLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVD-ANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI 212 (309)
Q Consensus 136 ~~VLELG~Gt-G~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~-~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI 212 (309)
++|+=||||. -+.++.+++..+ +..|+++|+++++++.+++-+. ..++ ..++.+...|..... .....||+|
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L---~~~m~f~~~d~~~~~--~dl~~~DvV 196 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL---SKRMSFITADVLDVT--YDLKEYDVV 196 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH----SSEEEEES-GGGG---GG----SEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc---cCCeEEEecchhccc--cccccCCEE
Confidence 5999999996 788888887643 5689999999999999998877 3444 245666655443221 123579999
Q ss_pred EEcCCCC-CcccHHHHHHHHHHHHhcCC
Q 021691 213 VASDCTF-FKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 213 i~~d~ly-~~~~~~~ll~~l~~lLk~~G 239 (309)
+.+..+. ..+....++..+.+.+++|.
T Consensus 197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga 224 (276)
T PF03059_consen 197 FLAALVGMDAEPKEEILEHLAKHMAPGA 224 (276)
T ss_dssp EE-TT-S----SHHHHHHHHHHHS-TTS
T ss_pred EEhhhcccccchHHHHHHHHHhhCCCCc
Confidence 8877665 35577899999999999988
No 253
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.89 E-value=0.025 Score=52.28 Aligned_cols=110 Identities=9% Similarity=-0.038 Sum_probs=66.7
Q ss_pred CCCeEEEeCCCCChhhHHHHHhc----CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC--C--CCC
Q 021691 134 RSKRVIELGSGYGLAGLVIAATT----EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD--F--PYI 205 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~----~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~--~--~~~ 205 (309)
++..++|||||.|.=...+...+ ....++++|+|.++|+.+..++...... ...+.....+..... . +..
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p--~l~v~~l~gdy~~~l~~l~~~~~ 153 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFS--HVRCAGLLGTYDDGLAWLKRPEN 153 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCC--CeEEEEEEecHHHHHhhcccccc
Confidence 56689999999986433333322 2357999999999999999988733221 122333333333221 1 111
Q ss_pred CCCccEEEEcC-CCCC--cccHHHHHHHHHH-HHhcCCCeEEEEEe
Q 021691 206 VDTFDVIVASD-CTFF--KEFHKDLARIIKF-LLKKVGPSEALFFS 247 (309)
Q Consensus 206 ~~~fDvIi~~d-~ly~--~~~~~~ll~~l~~-lLk~~G~~~~ii~~ 247 (309)
.....+++.-. .+.+ +.....+++.+++ .|++++ .+++..
T Consensus 154 ~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d--~lLiG~ 197 (319)
T TIGR03439 154 RSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSD--SFLIGL 197 (319)
T ss_pred cCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCC--EEEEec
Confidence 23456665533 4433 4556678889988 999988 555543
No 254
>KOG2730 consensus Methylase [General function prediction only]
Probab=96.88 E-value=0.00091 Score=57.56 Aligned_cols=108 Identities=11% Similarity=0.025 Sum_probs=75.1
Q ss_pred CCCCceeecccHHHHHHHHhhCcC-cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCC
Q 021691 108 DNTGLVCHWPSEDVLAFFSLSHAD-MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFG 186 (309)
Q Consensus 108 ~~tG~~~~W~sa~~La~~l~~~~~-~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~ 186 (309)
+--|+. |-+-+..+..+..... ......|+|.-||.|...+..|.. +..|+++|++|.-+..+++|++.-|+.
T Consensus 69 d~e~wf--svTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~--~~~VisIdiDPikIa~AkhNaeiYGI~-- 142 (263)
T KOG2730|consen 69 DREGWF--SVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQ--GPYVIAIDIDPVKIACARHNAEVYGVP-- 142 (263)
T ss_pred cccceE--EeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHh--CCeEEEEeccHHHHHHHhccceeecCC--
Confidence 455664 4444444444443221 124568999999998888888887 558999999999999999999999985
Q ss_pred CCceEEEEeeCCCCCCC--CCCCCccEEEEcCCCCCcc
Q 021691 187 GTTVKSMTLHWNQDDFP--YIVDTFDVIVASDCTFFKE 222 (309)
Q Consensus 187 ~~~v~~~~l~w~~~~~~--~~~~~fDvIi~~d~ly~~~ 222 (309)
.+|.+.+.||-+.-.. .....+|+|+.+.+.-.++
T Consensus 143 -~rItFI~GD~ld~~~~lq~~K~~~~~vf~sppwggp~ 179 (263)
T KOG2730|consen 143 -DRITFICGDFLDLASKLKADKIKYDCVFLSPPWGGPS 179 (263)
T ss_pred -ceeEEEechHHHHHHHHhhhhheeeeeecCCCCCCcc
Confidence 4889988888643211 1223477888877655443
No 255
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=96.86 E-value=0.007 Score=53.95 Aligned_cols=133 Identities=17% Similarity=0.183 Sum_probs=90.3
Q ss_pred cCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCc
Q 021691 130 ADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTF 209 (309)
Q Consensus 130 ~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~f 209 (309)
.....||.|+=+| ---+.|+++|...-+.+|..+|+++..+..+.+-++.-+. .++.+..+|..++.......+|
T Consensus 148 RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~----~~ie~~~~Dlr~plpe~~~~kF 222 (354)
T COG1568 148 RGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY----NNIEAFVFDLRNPLPEDLKRKF 222 (354)
T ss_pred ccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc----cchhheeehhcccChHHHHhhC
Confidence 3456799999999 6678888888776688999999999999999998888777 3566777766655444456899
Q ss_pred cEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHH----HHHhCCCeEE
Q 021691 210 DVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLE----EIEGNHLHFS 269 (309)
Q Consensus 210 DvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~----~~~~~G~~~~ 269 (309)
|+.+- |+.+-...+..++..=-..|+..|. .-++.-+.+..+.+++.+ +..+.|+-..
T Consensus 223 DvfiT-DPpeTi~alk~FlgRGI~tLkg~~~-aGyfgiT~ressidkW~eiQr~lIn~~gvVIT 284 (354)
T COG1568 223 DVFIT-DPPETIKALKLFLGRGIATLKGEGC-AGYFGITRRESSIDKWREIQRILINEMGVVIT 284 (354)
T ss_pred Ceeec-CchhhHHHHHHHHhccHHHhcCCCc-cceEeeeeccccHHHHHHHHHHHHHhcCeeeH
Confidence 99877 7766655555555444444544331 123333455556665544 3445666543
No 256
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.71 E-value=0.0047 Score=57.95 Aligned_cols=103 Identities=18% Similarity=0.121 Sum_probs=76.2
Q ss_pred CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691 131 DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD 210 (309)
Q Consensus 131 ~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD 210 (309)
..+++..++|+|||.|.+..+++. .....+++.|.++.-+...........+.. ...+ ..-|- ...+..+..||
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~-k~~~---~~~~~-~~~~fedn~fd 180 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDN-KCNF---VVADF-GKMPFEDNTFD 180 (364)
T ss_pred cCcccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhh-hcce---ehhhh-hcCCCCccccC
Confidence 345677899999999999998766 456799999999877666655444433321 1122 22121 12345578999
Q ss_pred EEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691 211 VIVASDCTFFKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 211 vIi~~d~ly~~~~~~~ll~~l~~lLk~~G 239 (309)
.+-+.+..-+.++...+++++.+.++|||
T Consensus 181 ~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG 209 (364)
T KOG1269|consen 181 GVRFLEVVCHAPDLEKVYAEIYRVLKPGG 209 (364)
T ss_pred cEEEEeecccCCcHHHHHHHHhcccCCCc
Confidence 99999999999999999999999999999
No 257
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.65 E-value=0.0055 Score=57.92 Aligned_cols=105 Identities=20% Similarity=0.125 Sum_probs=70.3
Q ss_pred CCCeEEEeCCCCChhhHHHHHh-cCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691 134 RSKRVIELGSGYGLAGLVIAAT-TEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI 212 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~-~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI 212 (309)
.+.+|||.=||+|+=|+..++. .+..+|++-|+|+++++.+++|++.|++..+ .+.+...|-.... ......||+|
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~--~~~v~~~DAn~ll-~~~~~~fD~I 125 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDE--RIEVSNMDANVLL-YSRQERFDVI 125 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGC--CEEEEES-HHHHH-CHSTT-EEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCc--eEEEehhhHHHHh-hhccccCCEE
Confidence 3459999999999999999988 4557999999999999999999999998531 3544443222111 1235789999
Q ss_pred EEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 213 VASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 213 i~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
=. |++-. ...+++...+.++.|| .+.+.+
T Consensus 126 Dl-DPfGS---p~pfldsA~~~v~~gG--ll~vTa 154 (377)
T PF02005_consen 126 DL-DPFGS---PAPFLDSALQAVKDGG--LLCVTA 154 (377)
T ss_dssp EE---SS-----HHHHHHHHHHEEEEE--EEEEEE
T ss_pred Ee-CCCCC---ccHhHHHHHHHhhcCC--EEEEec
Confidence 66 66543 4577888888898888 444443
No 258
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.61 E-value=0.005 Score=56.14 Aligned_cols=101 Identities=19% Similarity=0.144 Sum_probs=67.9
Q ss_pred HhhCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC---
Q 021691 126 SLSHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD--- 201 (309)
Q Consensus 126 l~~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~--- 201 (309)
.........|.+||=+|||. |++++..|+..|+.+|+.+|.++.-++.+++ +-...... ..... ....
T Consensus 161 Acr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~~~~------~~~~~-~~~~~~~ 232 (354)
T KOG0024|consen 161 ACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATVTDP------SSHKS-SPQELAE 232 (354)
T ss_pred hhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeEEee------ccccc-cHHHHHH
Confidence 44455677899999999995 9999999999999999999999999999987 32221110 00000 0000
Q ss_pred -C--CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCC
Q 021691 202 -F--PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGP 240 (309)
Q Consensus 202 -~--~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~ 240 (309)
. ......||+.+- -.-.+.-+++.-..++.+|.
T Consensus 233 ~v~~~~g~~~~d~~~d------CsG~~~~~~aai~a~r~gGt 268 (354)
T KOG0024|consen 233 LVEKALGKKQPDVTFD------CSGAEVTIRAAIKATRSGGT 268 (354)
T ss_pred HHHhhccccCCCeEEE------ccCchHHHHHHHHHhccCCE
Confidence 0 011234677665 34456677888888999993
No 259
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.56 E-value=0.014 Score=54.21 Aligned_cols=96 Identities=27% Similarity=0.313 Sum_probs=68.6
Q ss_pred CCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEE
Q 021691 135 SKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVA 214 (309)
Q Consensus 135 g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~ 214 (309)
.++|+|-=||||+=|+..|...+..+|++-|+||++++.++.|+..|... +..+..-|-. .........||+|=.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~----~~~v~n~DAN-~lm~~~~~~fd~IDi 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGE----DAEVINKDAN-ALLHELHRAFDVIDI 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcc----cceeecchHH-HHHHhcCCCccEEec
Confidence 68999999999999999999887779999999999999999999999331 1111111110 001122368999844
Q ss_pred cCCCCCcccHHHHHHHHHHHHhcCC
Q 021691 215 SDCTFFKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 215 ~d~ly~~~~~~~ll~~l~~lLk~~G 239 (309)
|++-. +.++++...+..+.+|
T Consensus 128 -DPFGS---PaPFlDaA~~s~~~~G 148 (380)
T COG1867 128 -DPFGS---PAPFLDAALRSVRRGG 148 (380)
T ss_pred -CCCCC---CchHHHHHHHHhhcCC
Confidence 66543 3466777777777788
No 260
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.51 E-value=0.0024 Score=57.47 Aligned_cols=120 Identities=18% Similarity=0.107 Sum_probs=78.0
Q ss_pred CceeecccHHHHHHHHhh--C----cCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCC
Q 021691 111 GLVCHWPSEDVLAFFSLS--H----ADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGA 184 (309)
Q Consensus 111 G~~~~W~sa~~La~~l~~--~----~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~ 184 (309)
|..++|++...+-.+--. . .-...|..|.||.+|.|.+++...-.++++.|.+.|.||.+++.+++|++.|+..
T Consensus 165 GI~~~~d~t~~MFS~GN~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~ 244 (351)
T KOG1227|consen 165 GITQIWDPTKTMFSRGNIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVM 244 (351)
T ss_pred CeEEEechhhhhhhcCcHHHHHHhhhcccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchH
Confidence 766799998877443111 0 0112467899999999999984444568999999999999999999999999763
Q ss_pred CCCCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCC
Q 021691 185 FGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGP 240 (309)
Q Consensus 185 ~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~ 240 (309)
. +.... .++...+.+....|-|...-..-.....+ +.-++|++.|.
T Consensus 245 ~---r~~i~---~gd~R~~~~~~~AdrVnLGLlPSse~~W~----~A~k~Lk~egg 290 (351)
T KOG1227|consen 245 D---RCRIT---EGDNRNPKPRLRADRVNLGLLPSSEQGWP----TAIKALKPEGG 290 (351)
T ss_pred H---HHHhh---hccccccCccccchheeeccccccccchH----HHHHHhhhcCC
Confidence 2 11111 11222333456678777754443344333 44556777764
No 261
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.45 E-value=0.032 Score=51.50 Aligned_cols=95 Identities=12% Similarity=-0.044 Sum_probs=66.4
Q ss_pred CeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEc
Q 021691 136 KRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVAS 215 (309)
Q Consensus 136 ~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~ 215 (309)
...+|+|+|+|.+.-.+...++ +|-+++.+...+-.++.++. .++. .+...-+ .. .++-|+|++-
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~-~gV~----~v~gdmf-------q~-~P~~daI~mk 243 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA-PGVE----HVAGDMF-------QD-TPKGDAIWMK 243 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc-CCcc----eeccccc-------cc-CCCcCeEEEE
Confidence 6889999999988777767654 58888887776666666654 4431 1111111 11 2445899999
Q ss_pred CCCCCc--ccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 216 DCTFFK--EFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 216 d~ly~~--~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
-++++. ++...+++..++-|+++| .+++..
T Consensus 244 WiLhdwtDedcvkiLknC~~sL~~~G--kIiv~E 275 (342)
T KOG3178|consen 244 WILHDWTDEDCVKILKNCKKSLPPGG--KIIVVE 275 (342)
T ss_pred eecccCChHHHHHHHHHHHHhCCCCC--EEEEEe
Confidence 999995 556778999999999999 565554
No 262
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.34 E-value=0.019 Score=50.78 Aligned_cols=142 Identities=11% Similarity=0.013 Sum_probs=76.4
Q ss_pred HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691 120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ 199 (309)
Q Consensus 120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~ 199 (309)
..+..++... .....+|+|||||.=-+++......+...++|.|++..+++.+.+-+..-+. ...+...|.-
T Consensus 93 d~fY~~if~~--~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-----~~~~~v~Dl~- 164 (251)
T PF07091_consen 93 DEFYDEIFGR--IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-----PHDARVRDLL- 164 (251)
T ss_dssp HHHHHHHCCC--S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT------CEEEEEE-TT-
T ss_pred HHHHHHHHhc--CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-----CcceeEeeee-
Confidence 4444445443 2236799999999887777655544557999999999999999988777665 2333333222
Q ss_pred CCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC-----Cc-----hHHHHHHHHHhCCCeEE
Q 021691 200 DDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR-----GD-----SLDKFLEEIEGNHLHFS 269 (309)
Q Consensus 200 ~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r-----~~-----~~~~f~~~~~~~G~~~~ 269 (309)
...+....|+.+.--++...+.... ....++|..-....++++-|.+ .. ....|...+.+.|+.+.
T Consensus 165 --~~~~~~~~DlaLllK~lp~le~q~~--g~g~~ll~~~~~~~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~~ 240 (251)
T PF07091_consen 165 --SDPPKEPADLALLLKTLPCLERQRR--GAGLELLDALRSPHVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIVD 240 (251)
T ss_dssp --TSHTTSEESEEEEET-HHHHHHHST--THHHHHHHHSCESEEEEEEES-------TTHHHCHHHHHHHHCCTTCEEEE
T ss_pred --ccCCCCCcchhhHHHHHHHHHHHhc--chHHHHHHHhCCCeEEEeccccccccCccccccCHHHHHHHhcccCCceee
Confidence 1224467899988544332211111 1112233322222455555543 11 12345556667777776
Q ss_pred EEec
Q 021691 270 IIEN 273 (309)
Q Consensus 270 ~~~~ 273 (309)
..+.
T Consensus 241 ~~~~ 244 (251)
T PF07091_consen 241 RLTF 244 (251)
T ss_dssp EEEE
T ss_pred eeec
Confidence 6654
No 263
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.33 E-value=0.015 Score=53.15 Aligned_cols=60 Identities=15% Similarity=0.166 Sum_probs=49.2
Q ss_pred HHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHh
Q 021691 121 VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDA 180 (309)
Q Consensus 121 ~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~ 180 (309)
+|.+-+.+.....+|..++|.=+|.|..+.++++.++..+|+++|.++.+++.+++++..
T Consensus 7 Vll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~ 66 (305)
T TIGR00006 7 VLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD 66 (305)
T ss_pred hhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence 444445554455678899999999999999999887668999999999999999988764
No 264
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.24 E-value=0.042 Score=49.17 Aligned_cols=126 Identities=11% Similarity=0.071 Sum_probs=69.8
Q ss_pred CeEEEeCCCC---ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC----------
Q 021691 136 KRVIELGSGY---GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF---------- 202 (309)
Q Consensus 136 ~~VLELG~Gt---G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~---------- 202 (309)
...||||||. |.+-...-+..+.++|+-+|.+|-++..++.-+..+.- ....+...|..+...
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~----g~t~~v~aD~r~p~~iL~~p~~~~~ 145 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR----GRTAYVQADLRDPEAILAHPEVRGL 145 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT----SEEEEEE--TT-HHHHHCSHHHHCC
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC----ccEEEEeCCCCCHHHHhcCHHHHhc
Confidence 5799999993 55444444456788999999999999999987766532 234555555543211
Q ss_pred CCCCCCccEEEEcCCCCCc---ccHHHHHHHHHHHHhcCCCeEEEEEeecC---CchHHHHHHHHHhCCCeE
Q 021691 203 PYIVDTFDVIVASDCTFFK---EFHKDLARIIKFLLKKVGPSEALFFSPKR---GDSLDKFLEEIEGNHLHF 268 (309)
Q Consensus 203 ~~~~~~fDvIi~~d~ly~~---~~~~~ll~~l~~lLk~~G~~~~ii~~~~r---~~~~~~f~~~~~~~G~~~ 268 (309)
-....+. .|++..++|+. ++...++..++..|.+|. .+.+.+... +...+.+.+.+.+.+..+
T Consensus 146 lD~~rPV-avll~~vLh~v~D~~dp~~iv~~l~d~lapGS--~L~ish~t~d~~p~~~~~~~~~~~~~~~~~ 214 (267)
T PF04672_consen 146 LDFDRPV-AVLLVAVLHFVPDDDDPAGIVARLRDALAPGS--YLAISHATDDGAPERAEALEAVYAQAGSPG 214 (267)
T ss_dssp --TTS---EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT---EEEEEEEB-TTSHHHHHHHHHHHHHCCS--
T ss_pred CCCCCCe-eeeeeeeeccCCCccCHHHHHHHHHHhCCCCc--eEEEEecCCCCCHHHHHHHHHHHHcCCCCc
Confidence 0112222 35566777774 568889999999999988 555544332 223345666666665443
No 265
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.14 E-value=0.048 Score=44.05 Aligned_cols=108 Identities=13% Similarity=0.083 Sum_probs=60.7
Q ss_pred EEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCC-CCccEEEEcCCCCC---------cccHHHHHH
Q 021691 160 EVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIV-DTFDVIVASDCTFF---------KEFHKDLAR 229 (309)
Q Consensus 160 ~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~-~~fDvIi~~d~ly~---------~~~~~~ll~ 229 (309)
+|++.|+.+++++..+++++.++.. .+++...-.-..-. .... +++|+++-+--.-- .+.--..++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~---~~v~li~~sHe~l~-~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLE---DRVTLILDSHENLD-EYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-G---SGEEEEES-GGGGG-GT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCC---CcEEEEECCHHHHH-hhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHH
Confidence 6999999999999999999998873 24544333221111 1122 47898887532111 222345667
Q ss_pred HHHHHHhcCCCeEEEEEeecCCc-------hHHHHHHHHHhCCCeEEEEec
Q 021691 230 IIKFLLKKVGPSEALFFSPKRGD-------SLDKFLEEIEGNHLHFSIIEN 273 (309)
Q Consensus 230 ~l~~lLk~~G~~~~ii~~~~r~~-------~~~~f~~~~~~~G~~~~~~~~ 273 (309)
.+.++|++|| .+.+..+..+. ...+|++.+....|.+...+.
T Consensus 77 ~al~lL~~gG--~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~ 125 (140)
T PF06962_consen 77 AALELLKPGG--IITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQF 125 (140)
T ss_dssp HHHHHEEEEE--EEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEE
T ss_pred HHHHhhccCC--EEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEc
Confidence 7788899999 55555444322 234566666666777755543
No 266
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.12 E-value=0.07 Score=45.10 Aligned_cols=123 Identities=11% Similarity=0.045 Sum_probs=70.0
Q ss_pred cCCCCeEEEeCCCCChhhHHHHHhc-CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC------CCC
Q 021691 132 MFRSKRVIELGSGYGLAGLVIAATT-EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD------FPY 204 (309)
Q Consensus 132 ~~~g~~VLELG~GtG~~~l~la~~~-~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~------~~~ 204 (309)
+.++.+|||+||..|..+..+-++. |.+.|.++|+.+ ...-.|... +.. -|..+.. ...
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh--------~~p~~Ga~~----i~~--~dvtdp~~~~ki~e~l 132 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH--------IEPPEGATI----IQG--NDVTDPETYRKIFEAL 132 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee--------ccCCCCccc----ccc--cccCCHHHHHHHHHhC
Confidence 4578999999999999999876666 667899999642 111111110 000 0111111 012
Q ss_pred CCCCccEEEEcCCCCCc-----ccHHHHHHH-------HHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEe
Q 021691 205 IVDTFDVIVASDCTFFK-----EFHKDLARI-------IKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIE 272 (309)
Q Consensus 205 ~~~~fDvIi~~d~ly~~-----~~~~~ll~~-------l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~ 272 (309)
+..+.|+|++ |..... -++..+++. ...++.|+| .+++-...+.....|...+.+.--.|..+.
T Consensus 133 p~r~VdvVlS-DMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g---~fvcK~w~g~e~~~l~r~l~~~f~~Vk~vK 208 (232)
T KOG4589|consen 133 PNRPVDVVLS-DMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNG---SFVCKLWDGSEEALLQRRLQAVFTNVKKVK 208 (232)
T ss_pred CCCcccEEEe-ccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCc---EEEEEEecCCchHHHHHHHHHHhhhcEeeC
Confidence 3467899988 666552 234443333 334567888 455555555555667777766533444443
No 267
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.04 E-value=0.019 Score=52.98 Aligned_cols=116 Identities=13% Similarity=0.217 Sum_probs=68.9
Q ss_pred CcCCCCeEEEeCCCCChhhHHHHHhcCC-cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC-----CC
Q 021691 131 DMFRSKRVIELGSGYGLAGLVIAATTEA-LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF-----PY 204 (309)
Q Consensus 131 ~~~~g~~VLELG~GtG~~~l~la~~~~~-~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~-----~~ 204 (309)
..|..++|||+|.|.|....++-..+|. ..++.++.|+.. ..+-.-+..|-. ....+|...+. +.
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~l-rkV~~tl~~nv~--------t~~td~r~s~vt~dRl~l 180 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPAL-RKVGDTLAENVS--------TEKTDWRASDVTEDRLSL 180 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHH-HHHHHHHHhhcc--------cccCCCCCCccchhccCC
Confidence 4567789999999988766554444443 457777777643 323233333322 22244443322 11
Q ss_pred -CCCCccEEEEcCCCCCc---ccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHH
Q 021691 205 -IVDTFDVIVASDCTFFK---EFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKF 257 (309)
Q Consensus 205 -~~~~fDvIi~~d~ly~~---~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f 257 (309)
....+++|+..|=+-.. ..+...++.+..++.+|| .++++.+..+..++..
T Consensus 181 p~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg--~lVivErGtp~Gf~~I 235 (484)
T COG5459 181 PAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGG--HLVIVERGTPAGFERI 235 (484)
T ss_pred CccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCC--eEEEEeCCCchhHHHH
Confidence 13467888777644332 334558888899999988 6777776665555443
No 268
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.98 E-value=0.029 Score=52.55 Aligned_cols=104 Identities=14% Similarity=0.086 Sum_probs=67.8
Q ss_pred cCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC-CCCCCCCc
Q 021691 132 MFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD-FPYIVDTF 209 (309)
Q Consensus 132 ~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~-~~~~~~~f 209 (309)
...+.+|+=+|||. |++++.+|+..++.+|+++|.+++=++.+++............. +..... .......|
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~------~~~~~~~~~t~g~g~ 239 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSED------DAGAEILELTGGRGA 239 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccc------cHHHHHHHHhCCCCC
Confidence 34455999999996 99999999999999999999999999988763222111000000 000000 00112368
Q ss_pred cEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeec
Q 021691 210 DVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK 249 (309)
Q Consensus 210 DvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~ 249 (309)
|+++-+-- .+..+....++++++| .+++....
T Consensus 240 D~vie~~G------~~~~~~~ai~~~r~gG--~v~~vGv~ 271 (350)
T COG1063 240 DVVIEAVG------SPPALDQALEALRPGG--TVVVVGVY 271 (350)
T ss_pred CEEEECCC------CHHHHHHHHHHhcCCC--EEEEEecc
Confidence 99887433 4567888889999999 56555544
No 269
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.89 E-value=0.099 Score=51.36 Aligned_cols=107 Identities=18% Similarity=0.193 Sum_probs=66.4
Q ss_pred cCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC--------CC-
Q 021691 132 MFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ--------DD- 201 (309)
Q Consensus 132 ~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~--------~~- 201 (309)
..++.+|+=+|||. |+.++..|+..|+ +|+++|.+++.++.++.- |..+ ..+....-++.. .+
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aesl----GA~~--v~i~~~e~~~~~~gya~~~s~~~ 234 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESM----GAEF--LELDFEEEGGSGDGYAKVMSEEF 234 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCeE--EEeccccccccccchhhhcchhH
Confidence 45789999999995 9999999999887 899999999988887752 2210 000000000000 00
Q ss_pred -------CCCCCCCccEEEEcCCCCCcccHHHH-HHHHHHHHhcCCCeEEEEEee
Q 021691 202 -------FPYIVDTFDVIVASDCTFFKEFHKDL-ARIIKFLLKKVGPSEALFFSP 248 (309)
Q Consensus 202 -------~~~~~~~fDvIi~~d~ly~~~~~~~l-l~~l~~lLk~~G~~~~ii~~~ 248 (309)
.......+|+||.+-..-.... +.+ .+...+.++++| .++....
T Consensus 235 ~~~~~~~~~~~~~gaDVVIetag~pg~~a-P~lit~~~v~~mkpGg--vIVdvg~ 286 (509)
T PRK09424 235 IKAEMALFAEQAKEVDIIITTALIPGKPA-PKLITAEMVASMKPGS--VIVDLAA 286 (509)
T ss_pred HHHHHHHHHhccCCCCEEEECCCCCcccC-cchHHHHHHHhcCCCC--EEEEEcc
Confidence 0000146899998543322222 344 488899999999 5555543
No 270
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.71 E-value=0.096 Score=48.62 Aligned_cols=91 Identities=15% Similarity=0.161 Sum_probs=61.2
Q ss_pred cCcCCCCeEEEeCCC-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC-CCCCCCCCC
Q 021691 130 ADMFRSKRVIELGSG-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN-QDDFPYIVD 207 (309)
Q Consensus 130 ~~~~~g~~VLELG~G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~-~~~~~~~~~ 207 (309)
....+|++|+=.|+| .|..++.+|+..+ ++|+++|.+++-++.+++--... + .++. .+.......
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~----------~--i~~~~~~~~~~~~~ 228 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADH----------V--INSSDSDALEAVKE 228 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcE----------E--EEcCCchhhHHhHh
Confidence 356689999999998 3677888899777 79999999999888887532111 1 1222 111112223
Q ss_pred CccEEEEcCCCCCcccHHHHHHHHHHHHhcCCC
Q 021691 208 TFDVIVASDCTFFKEFHKDLARIIKFLLKKVGP 240 (309)
Q Consensus 208 ~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~ 240 (309)
.||+|+..- . +..+....++|+++|+
T Consensus 229 ~~d~ii~tv------~-~~~~~~~l~~l~~~G~ 254 (339)
T COG1064 229 IADAIIDTV------G-PATLEPSLKALRRGGT 254 (339)
T ss_pred hCcEEEECC------C-hhhHHHHHHHHhcCCE
Confidence 499998842 2 5566777788888883
No 271
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.66 E-value=0.083 Score=46.48 Aligned_cols=124 Identities=15% Similarity=0.140 Sum_probs=60.7
Q ss_pred eEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCC-----CceEEEEeeCCCCCCCCCCCCccE
Q 021691 137 RVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGG-----TTVKSMTLHWNQDDFPYIVDTFDV 211 (309)
Q Consensus 137 ~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~-----~~v~~~~l~w~~~~~~~~~~~fDv 211 (309)
+|||.=+|-|.-++.+|.. +.+|++++.||-+-..++.-+......... .++++...|-.+.. .....+||+
T Consensus 78 ~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L-~~~~~s~DV 154 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYL-RQPDNSFDV 154 (234)
T ss_dssp -EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHC-CCHSS--SE
T ss_pred EEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHH-hhcCCCCCE
Confidence 8999999999999998865 458999999997777776554432211111 24555444332211 134578999
Q ss_pred EEEcCCCCCcccHHHH----HHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEeccCc
Q 021691 212 IVASDCTFFKEFHKDL----ARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYNA 276 (309)
Q Consensus 212 Ii~~d~ly~~~~~~~l----l~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~~~~ 276 (309)
|.. |+.|-.....++ ++.++.++..+. .+.+.+.++++-+.-.|+.-+....
T Consensus 155 VY~-DPMFp~~~ksa~vkk~m~~lr~L~~~d~------------~~~ell~~Alr~Ar~RVVvKrp~~a 210 (234)
T PF04445_consen 155 VYF-DPMFPERKKSALVKKEMRVLRDLAGHDP------------DAEELLEEALRVARKRVVVKRPRKA 210 (234)
T ss_dssp EEE---S-----TTTT-SHHHHHHHHHHSHHT------------TGGGGHHHHHHH-SSEEEEEEETT-
T ss_pred EEE-CCCCCCcccccccccchHHHHHhhccCc------------CHHHHHHHHHHhcCcEEEEecCCCC
Confidence 999 888875433333 344444443221 2223344555655666665544333
No 272
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=95.63 E-value=0.19 Score=47.60 Aligned_cols=112 Identities=13% Similarity=0.111 Sum_probs=74.3
Q ss_pred cCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691 132 MFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD 210 (309)
Q Consensus 132 ~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD 210 (309)
..+|.||||+-|-.|.=+.++|+... .+.|+|.|.+..-+..++.|+...|.. +..+...|-.........++||
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~----ntiv~n~D~~ef~~~~~~~~fD 314 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT----NTIVSNYDGREFPEKEFPGSFD 314 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC----ceEEEccCcccccccccCcccc
Confidence 34789999999998766666666543 468999999999999999999998873 3334444433221122234899
Q ss_pred EEEEcC-C-----CCCc----------------ccHHHHHHHHHHHHhcCCCeEEEEEeec
Q 021691 211 VIVASD-C-----TFFK----------------EFHKDLARIIKFLLKKVGPSEALFFSPK 249 (309)
Q Consensus 211 vIi~~d-~-----ly~~----------------~~~~~ll~~l~~lLk~~G~~~~ii~~~~ 249 (309)
-|+.-. | ++-. .....|+.....++++|| .++++++.
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GG--vLVYSTCS 373 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGG--VLVYSTCS 373 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCc--EEEEEeee
Confidence 998722 2 1111 123457777788999999 55555543
No 273
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=95.63 E-value=0.027 Score=51.61 Aligned_cols=121 Identities=17% Similarity=0.151 Sum_probs=70.8
Q ss_pred eEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEcC
Q 021691 137 RVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASD 216 (309)
Q Consensus 137 ~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d 216 (309)
+|+||-||.|.+++.+.. .|..-|.++|+++.+.+..+.|.. +.. ..|............+|++++..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~-ag~~~~~a~e~~~~a~~~y~~N~~-~~~----------~~Di~~~~~~~l~~~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQ-AGFEVVWAVEIDPDACETYKANFP-EVI----------CGDITEIDPSDLPKDVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHH-TTEEEEEEEESSHHHHHHHHHHHT-EEE----------ESHGGGCHHHHHHHT-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHh-cCcEEEEEeecCHHHHHhhhhccc-ccc----------cccccccccccccccceEEEecc
Confidence 799999999999988655 455678999999999999999876 211 11111111001111589999977
Q ss_pred CCCC----------cccHHHHHHHHHHHHhcCCCeEEEEEe-ecC------CchHHHHHHHHHhCCCeEEE
Q 021691 217 CTFF----------KEFHKDLARIIKFLLKKVGPSEALFFS-PKR------GDSLDKFLEEIEGNHLHFSI 270 (309)
Q Consensus 217 ~ly~----------~~~~~~ll~~l~~lLk~~G~~~~ii~~-~~r------~~~~~~f~~~~~~~G~~~~~ 270 (309)
+.-. .+....|+..+.++++.-.+ .++++. ... ...++.+.+.+++.|+.+..
T Consensus 70 PCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~P-k~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~~ 139 (335)
T PF00145_consen 70 PCQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKP-KYFLLENVPGLLSSKNGEVFKEILEELEELGYNVQW 139 (335)
T ss_dssp --TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS--SEEEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEEEE
T ss_pred CCceEeccccccccccccchhhHHHHHHHhhccc-eEEEecccceeeccccccccccccccccccceeehh
Confidence 5433 11223355555555544333 344444 221 24578888999999987753
No 274
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.58 E-value=0.061 Score=46.92 Aligned_cols=98 Identities=14% Similarity=0.098 Sum_probs=59.4
Q ss_pred HHHHHHHhhCcCcC--CCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhc-cCCCCCCceEEEEe
Q 021691 120 DVLAFFSLSHADMF--RSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDAN-SGAFGGTTVKSMTL 195 (309)
Q Consensus 120 ~~La~~l~~~~~~~--~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n-~~~~~~~~v~~~~l 195 (309)
.+|++.+.+..... ++.++||+|.|. .+.-+.=...+ +.+.+++|+++..++.++.++..| ++. ..++...-
T Consensus 62 h~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eY-gwrfvGseid~~sl~sA~~ii~~N~~l~---~~I~lr~q 137 (292)
T COG3129 62 HHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEY-GWRFVGSEIDSQSLSSAKAIISANPGLE---RAIRLRRQ 137 (292)
T ss_pred HHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceee-cceeecCccCHHHHHHHHHHHHcCcchh---hheeEEec
Confidence 55777766644333 445788988774 22222111122 468999999999999999999999 552 22332221
Q ss_pred eCCCCCC---CCCCCCccEEEEcCCCCCc
Q 021691 196 HWNQDDF---PYIVDTFDVIVASDCTFFK 221 (309)
Q Consensus 196 ~w~~~~~---~~~~~~fDvIi~~d~ly~~ 221 (309)
.=...-. ....+.||+++|+.++|..
T Consensus 138 k~~~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 138 KDSDAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred cCccccccccccccceeeeEecCCCcchh
Confidence 1000000 1124689999998888764
No 275
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=95.54 E-value=0.18 Score=42.05 Aligned_cols=135 Identities=16% Similarity=0.072 Sum_probs=78.4
Q ss_pred eCCCCChhhHHHHHhcC-CcEEEEEcCCHH--HHHH---HHHHHHhccCCCCCCceEEEEeeCCCCCC--CCCCCCccEE
Q 021691 141 LGSGYGLAGLVIAATTE-ALEVVISDGNPQ--VVDY---IQRNVDANSGAFGGTTVKSMTLHWNQDDF--PYIVDTFDVI 212 (309)
Q Consensus 141 LG~GtG~~~l~la~~~~-~~~V~~tD~~~~--~l~~---~~~n~~~n~~~~~~~~v~~~~l~w~~~~~--~~~~~~fDvI 212 (309)
+|=|-=-+++.||+..+ +..+++|-.+.+ +.+. +..|++.-... ...| ...+|-..-.. ......||.|
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~--g~~V-~~~VDat~l~~~~~~~~~~FDrI 79 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELREL--GVTV-LHGVDATKLHKHFRLKNQRFDRI 79 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhc--CCcc-ccCCCCCcccccccccCCcCCEE
Confidence 34455566777788777 778888876542 2221 22333322100 0111 11111111111 1235789999
Q ss_pred EEcCCCCC-------------cccHHHHHHHHHHHHhcCCCeEEEEEeecC-CchHHHHHHHHHhCCCeEEEEeccCchh
Q 021691 213 VASDCTFF-------------KEFHKDLARIIKFLLKKVGPSEALFFSPKR-GDSLDKFLEEIEGNHLHFSIIENYNAEI 278 (309)
Q Consensus 213 i~~d~ly~-------------~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r-~~~~~~f~~~~~~~G~~~~~~~~~~~~~ 278 (309)
+-+.+--. ...+..+++....+|+++| .+.+..... +.......+.+++.|+.......|+...
T Consensus 80 iFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G--~IhVTl~~~~py~~W~i~~lA~~~gl~l~~~~~F~~~~ 157 (166)
T PF10354_consen 80 IFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDG--EIHVTLKDGQPYDSWNIEELAAEAGLVLVRKVPFDPSD 157 (166)
T ss_pred EEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCC--EEEEEeCCCCCCccccHHHHHHhcCCEEEEEecCCHHH
Confidence 99765443 1245667888899999999 555544333 3355567788999999998888777766
Q ss_pred hh
Q 021691 279 WK 280 (309)
Q Consensus 279 ~~ 280 (309)
|.
T Consensus 158 yp 159 (166)
T PF10354_consen 158 YP 159 (166)
T ss_pred CC
Confidence 63
No 276
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.51 E-value=0.18 Score=46.56 Aligned_cols=120 Identities=16% Similarity=0.126 Sum_probs=74.6
Q ss_pred EEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEcCC
Q 021691 138 VIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDC 217 (309)
Q Consensus 138 VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ 217 (309)
|+||.||.|.+++.+-. .|..-+.++|.++.+.+..+.|... ... ...+ ..++. .. ...+|++++..+
T Consensus 1 vidLF~G~GG~~~Gl~~-aG~~~~~a~e~~~~a~~ty~~N~~~-~~~--~~Di--~~~~~-----~~-~~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQ-AGFKCVFASEIDKYAQKTYEANFGN-KVP--FGDI--TKISP-----SD-IPDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHH-cCCeEEEEEeCCHHHHHHHHHhCCC-CCC--ccCh--hhhhh-----hh-CCCcCEEEecCC
Confidence 68999999999888654 4544567899999999999888643 110 1111 11111 01 135899999765
Q ss_pred CCC----------cccHHHHHHHHHHHHhcCCCeEEEEEe-ec------CCchHHHHHHHHHhCCCeEEE
Q 021691 218 TFF----------KEFHKDLARIIKFLLKKVGPSEALFFS-PK------RGDSLDKFLEEIEGNHLHFSI 270 (309)
Q Consensus 218 ly~----------~~~~~~ll~~l~~lLk~~G~~~~ii~~-~~------r~~~~~~f~~~~~~~G~~~~~ 270 (309)
.-. .+....|+..+.++++.-.+ .++++. .. ....+..+...+++.|+.+..
T Consensus 69 Cq~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~P-~~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~ 137 (315)
T TIGR00675 69 CQPFSIAGKRKGFEDTRGTLFFEIVRILKEKKP-KFFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYY 137 (315)
T ss_pred CcccchhcccCCCCCchhhHHHHHHHHHhhcCC-CEEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEE
Confidence 432 12344577777777765444 334433 21 235677888899999998754
No 277
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.50 E-value=0.088 Score=48.88 Aligned_cols=101 Identities=18% Similarity=0.154 Sum_probs=62.1
Q ss_pred cCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCC
Q 021691 130 ADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDT 208 (309)
Q Consensus 130 ~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~ 208 (309)
....+|++||=.|||. |..++.+|+..++.+|+++|.+++-++.+++ .+.. .-+....-++.+ .....+.
T Consensus 165 ~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~--~~~~~g~ 235 (343)
T PRK09880 165 AGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGAD---KLVNPQNDDLDH--YKAEKGY 235 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCc---EEecCCcccHHH--HhccCCC
Confidence 3445789999999984 8888888888877789999999988877764 2221 000000000100 0011235
Q ss_pred ccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 209 FDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 209 fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
+|+|+-+ .-. +..+....++++++| .++.+.
T Consensus 236 ~D~vid~--~G~----~~~~~~~~~~l~~~G--~iv~~G 266 (343)
T PRK09880 236 FDVSFEV--SGH----PSSINTCLEVTRAKG--VMVQVG 266 (343)
T ss_pred CCEEEEC--CCC----HHHHHHHHHHhhcCC--EEEEEc
Confidence 8988763 221 345677778899999 555554
No 278
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=95.49 E-value=0.086 Score=45.14 Aligned_cols=47 Identities=19% Similarity=0.303 Sum_probs=42.2
Q ss_pred CeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhcc
Q 021691 136 KRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANS 182 (309)
Q Consensus 136 ~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~ 182 (309)
-.+.|||||.|.+-+.++-.+|..-++|.++-..+-++++..+.+-.
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR 108 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALR 108 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHh
Confidence 36899999999999999999999999999999999999999988754
No 279
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=95.04 E-value=0.23 Score=45.39 Aligned_cols=88 Identities=15% Similarity=0.101 Sum_probs=57.1
Q ss_pred CCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691 133 FRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV 211 (309)
Q Consensus 133 ~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv 211 (309)
.++++||=+|||. |++++.+|+..|+..|+++|.+++-++.+... .. + +-... ....+|+
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~~------i-----~~~~~----~~~g~Dv 203 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----EV------L-----DPEKD----PRRDYRA 203 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----cc------c-----Chhhc----cCCCCCE
Confidence 3678899999984 88888889988877788899887665554421 11 0 00000 1235898
Q ss_pred EEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 212 IVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 212 Ii~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
|+-+ .- .+..+....++++++| .++++.
T Consensus 204 vid~--~G----~~~~~~~~~~~l~~~G--~iv~~G 231 (308)
T TIGR01202 204 IYDA--SG----DPSLIDTLVRRLAKGG--EIVLAG 231 (308)
T ss_pred EEEC--CC----CHHHHHHHHHhhhcCc--EEEEEe
Confidence 8753 22 2346677788999999 555544
No 280
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=95.03 E-value=0.022 Score=53.74 Aligned_cols=70 Identities=21% Similarity=0.230 Sum_probs=54.8
Q ss_pred CceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCC
Q 021691 111 GLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGA 184 (309)
Q Consensus 111 G~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~ 184 (309)
|-+ .|.+-+..-+--. ..-..+|..|.|+-||.|-+++.+++. +..|++-|.+|++++.++.|+..|.+.
T Consensus 228 skV-YWnsRL~~Eherl-sg~fk~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNkv~ 297 (495)
T KOG2078|consen 228 SKV-YWNSRLSHEHERL-SGLFKPGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNKVD 297 (495)
T ss_pred ceE-EeeccchhHHHHH-hhccCCcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhccccccc
Confidence 444 6996554432222 223457889999999999999997776 579999999999999999999999875
No 281
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.81 E-value=0.21 Score=46.34 Aligned_cols=123 Identities=16% Similarity=0.146 Sum_probs=76.8
Q ss_pred CCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCC-CccEEE
Q 021691 135 SKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVD-TFDVIV 213 (309)
Q Consensus 135 g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~-~fDvIi 213 (309)
..+++||-||.|.+++.+... |..-+.++|+++.+++.-+.|...... ...|........... .+|+++
T Consensus 3 ~~~~idLFsG~GG~~lGf~~a-gf~~~~a~Eid~~a~~ty~~n~~~~~~---------~~~di~~~~~~~~~~~~~Dvli 72 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEA-GFEIVFANEIDPPAVATYKANFPHGDI---------ILGDIKELDGEALRKSDVDVLI 72 (328)
T ss_pred CceEEeeccCCchHHHHHHhc-CCeEEEEEecCHHHHHHHHHhCCCCce---------eechHhhcChhhccccCCCEEE
Confidence 358999999999999876554 455688999999999999888653111 011111111111112 789999
Q ss_pred EcCCCCC----------cccHHHHHHHHHHHHhcCCCeEEEEEeec------CCchHHHHHHHHHhCCCeE
Q 021691 214 ASDCTFF----------KEFHKDLARIIKFLLKKVGPSEALFFSPK------RGDSLDKFLEEIEGNHLHF 268 (309)
Q Consensus 214 ~~d~ly~----------~~~~~~ll~~l~~lLk~~G~~~~ii~~~~------r~~~~~~f~~~~~~~G~~~ 268 (309)
+..+... .+....|+-.+.++++.-.+ .++++..- ...+++.+.+.+++.|+.+
T Consensus 73 gGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~~ 142 (328)
T COG0270 73 GGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVKGLLSSKGQTFDEIKKELEELGYGV 142 (328)
T ss_pred eCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCchHHhcCchHHHHHHHHHHHcCCcc
Confidence 9876644 12344455666666554443 33333321 3457888999999999863
No 282
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=94.66 E-value=0.073 Score=47.83 Aligned_cols=113 Identities=14% Similarity=0.153 Sum_probs=74.3
Q ss_pred cCCCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCC
Q 021691 107 IDNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFG 186 (309)
Q Consensus 107 ~~~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~ 186 (309)
+..|-.. .||-..- |+...+ .|..++|.|||.|-.... .+...+++.|.+...+.-+++. ++.
T Consensus 25 fs~tr~~-~Wp~v~q---fl~~~~---~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~---~~~--- 87 (293)
T KOG1331|consen 25 FSATRAA-PWPMVRQ---FLDSQP---TGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRS---GGD--- 87 (293)
T ss_pred ccccccC-ccHHHHH---HHhccC---CcceeeecccCCcccCcC----CCcceeeecchhhhhccccccC---CCc---
Confidence 4556666 8996544 343333 478999999999965432 3556799999887766665532 110
Q ss_pred CCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCcc---cHHHHHHHHHHHHhcCCCeE
Q 021691 187 GTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKE---FHKDLARIIKFLLKKVGPSE 242 (309)
Q Consensus 187 ~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~---~~~~ll~~l~~lLk~~G~~~ 242 (309)
.+...| ....+....+||.+++..++||.. ....+++.+.+.++|+|...
T Consensus 88 ----~~~~ad--~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~l 140 (293)
T KOG1331|consen 88 ----NVCRAD--ALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNAL 140 (293)
T ss_pred ----eeehhh--hhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceE
Confidence 111111 123345567899999999999854 46678899999999999533
No 283
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=94.11 E-value=0.13 Score=48.13 Aligned_cols=54 Identities=22% Similarity=0.308 Sum_probs=40.4
Q ss_pred HHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHH
Q 021691 121 VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQ 175 (309)
Q Consensus 121 ~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~ 175 (309)
.|++.+.+......-..|+|+|+|.|.++.+++-.++ -.|.++|.|....+.++
T Consensus 140 ~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~-lsV~aIegsq~~~~ra~ 193 (476)
T KOG2651|consen 140 RLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYG-LSVKAIEGSQRLVERAQ 193 (476)
T ss_pred HHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccC-ceEEEeccchHHHHHHH
Confidence 3555555444444557999999999999999887764 58999999977666654
No 284
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=94.07 E-value=0.41 Score=45.35 Aligned_cols=127 Identities=17% Similarity=0.159 Sum_probs=73.8
Q ss_pred CeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC-CCCCCCccEEE
Q 021691 136 KRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF-PYIVDTFDVIV 213 (309)
Q Consensus 136 ~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~-~~~~~~fDvIi 213 (309)
++||=||||. |......+...+..+|++.|.+++..+.+..+.. .++++..+|..+.+. ...-..+|+||
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~--------~~v~~~~vD~~d~~al~~li~~~d~VI 73 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG--------GKVEALQVDAADVDALVALIKDFDLVI 73 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc--------ccceeEEecccChHHHHHHHhcCCEEE
Confidence 5799999973 6444433333445799999999887776655422 256777777655421 12234569999
Q ss_pred EcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEeccCchhh
Q 021691 214 ASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYNAEIW 279 (309)
Q Consensus 214 ~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~~~~~~~ 279 (309)
.+-+.|... ..++..++.+- ..+-.+...... .++.+.++++|.....---+++.+-
T Consensus 74 n~~p~~~~~------~i~ka~i~~gv--~yvDts~~~~~~-~~~~~~a~~Agit~v~~~G~dPGi~ 130 (389)
T COG1748 74 NAAPPFVDL------TILKACIKTGV--DYVDTSYYEEPP-WKLDEEAKKAGITAVLGCGFDPGIT 130 (389)
T ss_pred EeCCchhhH------HHHHHHHHhCC--CEEEcccCCchh-hhhhHHHHHcCeEEEcccCcCcchH
Confidence 976655432 33444444432 222223233333 6777888888877654434555433
No 285
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=93.76 E-value=0.15 Score=43.85 Aligned_cols=54 Identities=7% Similarity=0.003 Sum_probs=38.7
Q ss_pred HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHH
Q 021691 120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQR 176 (309)
Q Consensus 120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~ 176 (309)
..|.+.+.... ..+|..|||--||+|..++++.+. +.+.+++|++++..+.+++
T Consensus 178 ~~l~~~lI~~~-t~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 178 VELIERLIKAS-TNPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHH-S-TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhh-hccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence 44555555432 246889999999999999885554 6789999999999988864
No 286
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=93.70 E-value=0.14 Score=49.58 Aligned_cols=121 Identities=15% Similarity=0.174 Sum_probs=72.2
Q ss_pred CeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEc
Q 021691 136 KRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVAS 215 (309)
Q Consensus 136 ~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~ 215 (309)
++|+|+.+|.|.++-+|... .|+..-.-|..-.+.-.-+-..|+ -....||.+. .+.-..+||+|-++
T Consensus 367 RNVMDMnAg~GGFAAAL~~~----~VWVMNVVP~~~~ntL~vIydRGL-------IG~yhDWCE~-fsTYPRTYDLlHA~ 434 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD----PVWVMNVVPVSGPNTLPVIYDRGL-------IGVYHDWCEA-FSTYPRTYDLLHAD 434 (506)
T ss_pred eeeeeecccccHHHHHhccC----CceEEEecccCCCCcchhhhhccc-------chhccchhhc-cCCCCcchhheehh
Confidence 58999999999887665432 355544333211111112222333 2235678743 34456899999886
Q ss_pred CCCCC---cccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEe
Q 021691 216 DCTFF---KEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIE 272 (309)
Q Consensus 216 d~ly~---~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~ 272 (309)
.++-. .-.+..++-++.|+|+|+| .+++-+. .....+....+....+.+....
T Consensus 435 ~lfs~~~~rC~~~~illEmDRILRP~G--~~iiRD~--~~vl~~v~~i~~~lrW~~~~~d 490 (506)
T PF03141_consen 435 GLFSLYKDRCEMEDILLEMDRILRPGG--WVIIRDT--VDVLEKVKKIAKSLRWEVRIHD 490 (506)
T ss_pred hhhhhhcccccHHHHHHHhHhhcCCCc--eEEEecc--HHHHHHHHHHHHhCcceEEEEe
Confidence 65433 3457889999999999999 5555222 2344555666666666655443
No 287
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=93.66 E-value=0.79 Score=42.32 Aligned_cols=93 Identities=13% Similarity=-0.013 Sum_probs=59.3
Q ss_pred cCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCC
Q 021691 130 ADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDT 208 (309)
Q Consensus 130 ~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~ 208 (309)
....+|.+||=.|+|. |...+.+|+..++ +|+++|.+++-++.+++ .|.. .+ ... ... ....
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~----~Ga~----~v--i~~--~~~----~~~~ 223 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALA----LGAA----SA--GGA--YDT----PPEP 223 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----hCCc----ee--ccc--ccc----Cccc
Confidence 4556789999999874 7777777887765 79999998887666654 2321 11 000 000 1235
Q ss_pred ccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 209 FDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 209 fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
+|+++-.+.. ...+....++++++| .++++.
T Consensus 224 ~d~~i~~~~~------~~~~~~~~~~l~~~G--~~v~~G 254 (329)
T TIGR02822 224 LDAAILFAPA------GGLVPPALEALDRGG--VLAVAG 254 (329)
T ss_pred ceEEEECCCc------HHHHHHHHHhhCCCc--EEEEEe
Confidence 8887765442 246777778999999 455544
No 288
>PRK10458 DNA cytosine methylase; Provisional
Probab=93.62 E-value=1.2 Score=43.37 Aligned_cols=131 Identities=14% Similarity=0.112 Sum_probs=76.3
Q ss_pred CCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccC-CCCCCceEEEEeeCCCCC----------CC
Q 021691 135 SKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSG-AFGGTTVKSMTLHWNQDD----------FP 203 (309)
Q Consensus 135 g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~-~~~~~~v~~~~l~w~~~~----------~~ 203 (309)
..+++||-||.|.+++.+-. .|..-|.++|+++.+.+.-+.|...... ..-...+ ..++..... ..
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~-aG~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI--~~i~~~~~~~~~~~~~~~~~~ 164 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEA-IGGQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDI--RDITLSHKEGVSDEEAAEHIR 164 (467)
T ss_pred CceEEEeCcCccHHHHHHHH-cCCEEEEEEechHHHHHHHHHHcCCCCccceeccCh--hhCccccccccchhhhhhhhh
Confidence 45999999999999888644 4666778999999998888887521110 0000111 111110000 00
Q ss_pred CCCCCccEEEEcCCCCCc-------------------ccHHHHHHHHHHHHhcCCCeEEEEEee-------cCCchHHHH
Q 021691 204 YIVDTFDVIVASDCTFFK-------------------EFHKDLARIIKFLLKKVGPSEALFFSP-------KRGDSLDKF 257 (309)
Q Consensus 204 ~~~~~fDvIi~~d~ly~~-------------------~~~~~ll~~l~~lLk~~G~~~~ii~~~-------~r~~~~~~f 257 (309)
.....+|++++..+...- +....|+..+.++++.-.+ .++++.. ....+++.+
T Consensus 165 ~~~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf~~~~rii~~~kP-k~fvlENV~gl~s~~~g~~f~~i 243 (467)
T PRK10458 165 QHIPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLFFDVARIIDAKRP-AIFVLENVKNLKSHDKGKTFRII 243 (467)
T ss_pred ccCCCCCEEEEcCCCCccchhcccccccccccccccCCccccHHHHHHHHHHHhCC-CEEEEeCcHhhhcccccHHHHHH
Confidence 112358999987755321 1123366666677654433 3444332 234578889
Q ss_pred HHHHHhCCCeEE
Q 021691 258 LEEIEGNHLHFS 269 (309)
Q Consensus 258 ~~~~~~~G~~~~ 269 (309)
.+.+++.|+.+.
T Consensus 244 ~~~L~~lGY~v~ 255 (467)
T PRK10458 244 MQTLDELGYDVA 255 (467)
T ss_pred HHHHHHcCCeEE
Confidence 999999999875
No 289
>PRK11524 putative methyltransferase; Provisional
Probab=93.49 E-value=0.26 Score=44.82 Aligned_cols=58 Identities=16% Similarity=0.057 Sum_probs=44.6
Q ss_pred HHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhc
Q 021691 121 VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDAN 181 (309)
Q Consensus 121 ~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n 181 (309)
.|.+.+.... ..+|..|||--+|+|..++++.+. +.+.+|+|++++.++.+++++...
T Consensus 196 ~L~erlI~~~-S~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~~~ 253 (284)
T PRK11524 196 ALLKRIILAS-SNPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLDVA 253 (284)
T ss_pred HHHHHHHHHh-CCCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHhc
Confidence 3444444321 257889999999999999885444 679999999999999999987643
No 290
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=93.45 E-value=0.7 Score=44.64 Aligned_cols=103 Identities=12% Similarity=0.189 Sum_probs=67.0
Q ss_pred CeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEc
Q 021691 136 KRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVAS 215 (309)
Q Consensus 136 ~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~ 215 (309)
-++|.+|||.--+...+-+ .|-..|+.+|+|+-+++.+...- +.. .........+- ....+.+++||+|+.-
T Consensus 50 ~~~l~lGCGNS~l~e~ly~-~G~~dI~~iD~S~V~V~~m~~~~---~~~--~~~~~~~~~d~--~~l~fedESFdiVIdk 121 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYK-NGFEDITNIDSSSVVVAAMQVRN---AKE--RPEMQMVEMDM--DQLVFEDESFDIVIDK 121 (482)
T ss_pred ceeEeecCCCCHHHHHHHh-cCCCCceeccccHHHHHHHHhcc---ccC--CcceEEEEecc--hhccCCCcceeEEEec
Confidence 3899999999988877655 45678999999999888776532 111 12233333322 2234456789988874
Q ss_pred CCC----------CCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691 216 DCT----------FFKEFHKDLARIIKFLLKKVGPSEALFF 246 (309)
Q Consensus 216 d~l----------y~~~~~~~ll~~l~~lLk~~G~~~~ii~ 246 (309)
..+ ++.......+..+.++++++|+...+.+
T Consensus 122 GtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 122 GTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 332 2233456678899999999995433333
No 291
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.36 E-value=0.091 Score=50.60 Aligned_cols=99 Identities=29% Similarity=0.243 Sum_probs=70.0
Q ss_pred CCCeEEEeCCCCChhhHHHHHhcCC-cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCC--CCCCCCCCcc
Q 021691 134 RSKRVIELGSGYGLAGLVIAATTEA-LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQD--DFPYIVDTFD 210 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~~~-~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~--~~~~~~~~fD 210 (309)
.+-+|||-=|++|+-++..|+..++ .+|++-|.++.++..+++|++.|+.. ..+....-|.... ..+.....||
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~---~ive~~~~DA~~lM~~~~~~~~~FD 185 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE---DIVEPHHSDANVLMYEHPMVAKFFD 185 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch---hhcccccchHHHHHHhccccccccc
Confidence 4679999999999999998888765 58999999999999999999999763 2222222221111 1112246899
Q ss_pred EEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691 211 VIVASDCTFFKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 211 vIi~~d~ly~~~~~~~ll~~l~~lLk~~G 239 (309)
+|=. |++-.. ..+++...+.++.+|
T Consensus 186 vIDL-DPyGs~---s~FLDsAvqav~~gG 210 (525)
T KOG1253|consen 186 VIDL-DPYGSP---SPFLDSAVQAVRDGG 210 (525)
T ss_pred eEec-CCCCCc---cHHHHHHHHHhhcCC
Confidence 9855 664433 456777777778888
No 292
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=93.36 E-value=0.34 Score=45.17 Aligned_cols=63 Identities=24% Similarity=0.246 Sum_probs=45.0
Q ss_pred HHHHHHHHhhCc---CcCCCCeEEEeCCCCChhhHHHHHhc--------CCcEEEEEcCCHHHHHHHHHHHHhc
Q 021691 119 EDVLAFFSLSHA---DMFRSKRVIELGSGYGLAGLVIAATT--------EALEVVISDGNPQVVDYIQRNVDAN 181 (309)
Q Consensus 119 a~~La~~l~~~~---~~~~g~~VLELG~GtG~~~l~la~~~--------~~~~V~~tD~~~~~l~~~~~n~~~n 181 (309)
++.+|.|+.+.- .....-.++|+|+|+|.+..-+.+.. .+.++..++.|++..+.=+.+++..
T Consensus 59 Gella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 59 GELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 466777777642 22234589999999998876555443 3679999999999877777666654
No 293
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=93.12 E-value=0.29 Score=42.17 Aligned_cols=106 Identities=9% Similarity=-0.005 Sum_probs=53.7
Q ss_pred CCCeEEEeCCCCChhhHHHHHhc----CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC----CCC
Q 021691 134 RSKRVIELGSGYGLAGLVIAATT----EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF----PYI 205 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~----~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~----~~~ 205 (309)
+.+.|+|+|.-.|.-.+..|..+ +.++|+++|++....+.. .++...+ ..+|++.+.+..+.+. ...
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp~---~~rI~~i~Gds~d~~~~~~v~~~ 106 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHPM---SPRITFIQGDSIDPEIVDQVREL 106 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG-------TTEEEEES-SSSTHHHHTSGSS
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhccc---cCceEEEECCCCCHHHHHHHHHh
Confidence 56799999999887777665432 567999999964322211 1111112 2567777765543321 111
Q ss_pred --CCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 206 --VDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 206 --~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
.....+|+- |.-|..+..-.-++....++++|+ .+++.+
T Consensus 107 ~~~~~~vlVil-Ds~H~~~hvl~eL~~y~plv~~G~--Y~IVeD 147 (206)
T PF04989_consen 107 ASPPHPVLVIL-DSSHTHEHVLAELEAYAPLVSPGS--YLIVED 147 (206)
T ss_dssp ----SSEEEEE-SS----SSHHHHHHHHHHT--TT---EEEETS
T ss_pred hccCCceEEEE-CCCccHHHHHHHHHHhCccCCCCC--EEEEEe
Confidence 233445655 888888888888889999999998 666655
No 294
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=93.07 E-value=0.58 Score=42.44 Aligned_cols=107 Identities=19% Similarity=0.150 Sum_probs=71.5
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI 212 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI 212 (309)
...++||=+|-|-|.+-...+++-.-..++..|++..+++.-++-...-...+...+|.....|...-......++||+|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 45689999999988776666666445689999999999999888776544334445554443322211111235789999
Q ss_pred EE--cCCCCC--cccHHHHHHHHHHHHhcCC
Q 021691 213 VA--SDCTFF--KEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 213 i~--~d~ly~--~~~~~~ll~~l~~lLk~~G 239 (309)
+. +|++-. .......+..+.+.||++|
T Consensus 200 i~dssdpvgpa~~lf~~~~~~~v~~aLk~dg 230 (337)
T KOG1562|consen 200 ITDSSDPVGPACALFQKPYFGLVLDALKGDG 230 (337)
T ss_pred EEecCCccchHHHHHHHHHHHHHHHhhCCCc
Confidence 87 334332 1234667788899999999
No 295
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=92.92 E-value=0.5 Score=43.85 Aligned_cols=94 Identities=10% Similarity=0.002 Sum_probs=58.1
Q ss_pred cCCCCeEEEeCCCC-ChhhHHHHHh-cCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCc
Q 021691 132 MFRSKRVIELGSGY-GLAGLVIAAT-TEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTF 209 (309)
Q Consensus 132 ~~~g~~VLELG~Gt-G~~~l~la~~-~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~f 209 (309)
..+|.+||=+|||. |+..+.+|+. .++.+|+++|.+++-++.++. .+.. ... -++. ....+
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~~-----~~~--~~~~------~~~g~ 223 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADET-----YLI--DDIP------EDLAV 223 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCce-----eeh--hhhh------hccCC
Confidence 45789999999984 7777666765 567789999999877776653 1110 000 0111 01248
Q ss_pred cEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 210 DVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 210 DvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
|+|+- +.-.. ..+..+....++++++| .++++.
T Consensus 224 d~viD--~~G~~-~~~~~~~~~~~~l~~~G--~iv~~G 256 (341)
T cd08237 224 DHAFE--CVGGR-GSQSAINQIIDYIRPQG--TIGLMG 256 (341)
T ss_pred cEEEE--CCCCC-ccHHHHHHHHHhCcCCc--EEEEEe
Confidence 88874 22211 13456777788999999 555544
No 296
>PRK13699 putative methylase; Provisional
Probab=92.92 E-value=0.42 Score=41.99 Aligned_cols=57 Identities=11% Similarity=-0.087 Sum_probs=43.5
Q ss_pred HHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhc
Q 021691 122 LAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDAN 181 (309)
Q Consensus 122 La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n 181 (309)
|.+.+.... ..+|..|||--||+|..++++.+. +.+++++|++++..+.+.+.+...
T Consensus 152 l~~~~i~~~-s~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 152 SLQPLIESF-THPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHh-CCCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHHHH
Confidence 444444322 236889999999999999885443 578999999999999998887653
No 297
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=92.91 E-value=2.4 Score=37.59 Aligned_cols=148 Identities=13% Similarity=0.181 Sum_probs=99.4
Q ss_pred CCCceeecccH---HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCC
Q 021691 109 NTGLVCHWPSE---DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAF 185 (309)
Q Consensus 109 ~tG~~~~W~sa---~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~ 185 (309)
.+|...+|.++ ..|..|+....++.+|.+ |..-+|+-.++..+.+ ++.++.+++..|+-...+++|+..
T Consensus 61 ~~GI~RL~~a~~lpa~l~~yl~~i~~lN~~~~-l~~YpGSP~lA~~llR--~qDRl~l~ELHp~D~~~L~~~f~~----- 132 (279)
T COG2961 61 EQGIARLWQAADLPAELEPYLDAVRQLNPGGG-LRYYPGSPLLARQLLR--EQDRLVLTELHPSDAPLLRNNFAG----- 132 (279)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHhCCCCC-cccCCCCHHHHHHHcc--hhceeeeeecCccHHHHHHHHhCC-----
Confidence 34444578764 446777776666666666 7889998877666544 367999999999999999888762
Q ss_pred CCCceEEEEeeCCCCCCC-C-CCCCccEEEEcCCCC-CcccHHHHHHHHHHHHhcCCC-eEEEEEeecCCchHHHHHHHH
Q 021691 186 GGTTVKSMTLHWNQDDFP-Y-IVDTFDVIVASDCTF-FKEFHKDLARIIKFLLKKVGP-SEALFFSPKRGDSLDKFLEEI 261 (309)
Q Consensus 186 ~~~~v~~~~l~w~~~~~~-~-~~~~fDvIi~~d~ly-~~~~~~~ll~~l~~lLk~~G~-~~~ii~~~~r~~~~~~f~~~~ 261 (309)
..++++...|.-..... . +.+.=-+|+. |+.| ...+++.+++++.+.++.-.. ..+|+.-.......+.|.+.+
T Consensus 133 -d~~vrv~~~DG~~~l~a~LPP~erRglVLI-DPPfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~~~f~~~L 210 (279)
T COG2961 133 -DRRVRVLRGDGFLALKAHLPPKERRGLVLI-DPPFELKDEYQRVVEALAEAYKRFATGTYAIWYPIKDRRQIRRFLRAL 210 (279)
T ss_pred -CcceEEEecCcHHHHhhhCCCCCcceEEEe-CCCcccccHHHHHHHHHHHHHHhhcCceEEEEEeecchHHHHHHHHHH
Confidence 23566666543221111 1 1233456776 5555 477899999999999986432 244554445567788999999
Q ss_pred HhCCC
Q 021691 262 EGNHL 266 (309)
Q Consensus 262 ~~~G~ 266 (309)
++.|+
T Consensus 211 ~~~~i 215 (279)
T COG2961 211 EALGI 215 (279)
T ss_pred hhcCc
Confidence 99987
No 298
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.81 E-value=1 Score=36.70 Aligned_cols=92 Identities=20% Similarity=0.124 Sum_probs=56.5
Q ss_pred CeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEc
Q 021691 136 KRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVAS 215 (309)
Q Consensus 136 ~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~ 215 (309)
.+.+|||+|-|.+-+.+|+ ++...-++++.||=.+.+.+-..-..+.. ....+..-|.-. ....+-++-+|+.+
T Consensus 74 GklvDlGSGDGRiVlaaar-~g~~~a~GvELNpwLVaysrl~a~R~g~~---k~trf~RkdlwK--~dl~dy~~vviFga 147 (199)
T KOG4058|consen 74 GKLVDLGSGDGRIVLAAAR-CGLRPAVGVELNPWLVAYSRLHAWRAGCA---KSTRFRRKDLWK--VDLRDYRNVVIFGA 147 (199)
T ss_pred CcEEeccCCCceeehhhhh-hCCCcCCceeccHHHHHHHHHHHHHHhcc---cchhhhhhhhhh--ccccccceEEEeeh
Confidence 3688999999999888655 45678999999999999988777666653 222222222111 11122345556554
Q ss_pred CCCCCcccHHHHHHHHHHHHhcC
Q 021691 216 DCTFFKEFHKDLARIIKFLLKKV 238 (309)
Q Consensus 216 d~ly~~~~~~~ll~~l~~lLk~~ 238 (309)
.+.++.|...+..-+..+
T Consensus 148 -----es~m~dLe~KL~~E~p~n 165 (199)
T KOG4058|consen 148 -----ESVMPDLEDKLRTELPAN 165 (199)
T ss_pred -----HHHHhhhHHHHHhhCcCC
Confidence 334555555555444333
No 299
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=92.76 E-value=0.39 Score=45.06 Aligned_cols=103 Identities=17% Similarity=0.062 Sum_probs=60.7
Q ss_pred cCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCC
Q 021691 130 ADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDT 208 (309)
Q Consensus 130 ~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~ 208 (309)
..+.+|.+||=.|+|. |...+.+|+..++.+|+++|.+++-++.+++ .+.. .-+....-+|...-.....+.
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~i~~~~~~g 259 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGAT---ATVNAGDPNAVEQVRELTGGG 259 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCc---eEeCCCchhHHHHHHHHhCCC
Confidence 3456788999999874 7777788888777689999999887777754 2221 001100001100000011225
Q ss_pred ccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 209 FDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 209 fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
+|+|+-+ .-. ...+....++++++| .++.+.
T Consensus 260 ~d~vid~--~G~----~~~~~~~~~~l~~~G--~iv~~G 290 (371)
T cd08281 260 VDYAFEM--AGS----VPALETAYEITRRGG--TTVTAG 290 (371)
T ss_pred CCEEEEC--CCC----hHHHHHHHHHHhcCC--EEEEEc
Confidence 8988753 211 345666778899999 555544
No 300
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=92.55 E-value=3.5 Score=38.64 Aligned_cols=131 Identities=11% Similarity=0.053 Sum_probs=73.6
Q ss_pred CcCCCCeEEEeCCCCChhhHHHHHhcCC----cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE---eeCCCCCC-
Q 021691 131 DMFRSKRVIELGSGYGLAGLVIAATTEA----LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT---LHWNQDDF- 202 (309)
Q Consensus 131 ~~~~g~~VLELG~GtG~~~l~la~~~~~----~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~---l~w~~~~~- 202 (309)
++.+|.+|||+-+-.|.=++.+....-. ..|++-|.++.=+..+++.+..-... .+.+.. ..|.....
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~----~~~v~~~~~~~~p~~~~~ 227 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSP----NLLVTNHDASLFPNIYLK 227 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCc----ceeeecccceeccccccc
Confidence 4568999999999988766555444322 38999999998888887776432211 111111 11111100
Q ss_pred ---CCCCCCccEEEEcCCC--CCc----------------------ccHHHHHHHHHHHHhcCCCeEEEEEeecCC--ch
Q 021691 203 ---PYIVDTFDVIVASDCT--FFK----------------------EFHKDLARIIKFLLKKVGPSEALFFSPKRG--DS 253 (309)
Q Consensus 203 ---~~~~~~fDvIi~~d~l--y~~----------------------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~--~~ 253 (309)
+.....||-|++ |+. .+. ..--.++..-.++|++|| .++++++.-. +.
T Consensus 228 ~~~~~~~~~fDrVLv-DVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG--~lVYSTCSLnpieN 304 (375)
T KOG2198|consen 228 DGNDKEQLKFDRVLV-DVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGG--RLVYSTCSLNPIEN 304 (375)
T ss_pred cCchhhhhhcceeEE-ecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCC--EEEEeccCCCchhh
Confidence 112357999988 433 220 011235666678999999 6777665432 22
Q ss_pred HHHHHHHHHhCCCeE
Q 021691 254 LDKFLEEIEGNHLHF 268 (309)
Q Consensus 254 ~~~f~~~~~~~G~~~ 268 (309)
..-.-+++++.|-.+
T Consensus 305 EaVV~~~L~~~~~~~ 319 (375)
T KOG2198|consen 305 EAVVQEALQKVGGAV 319 (375)
T ss_pred HHHHHHHHHHhcCcc
Confidence 233444555555443
No 301
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=92.38 E-value=1.7 Score=37.96 Aligned_cols=106 Identities=17% Similarity=0.238 Sum_probs=61.6
Q ss_pred HHHHHhhCcC-cCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691 122 LAFFSLSHAD-MFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ 199 (309)
Q Consensus 122 La~~l~~~~~-~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~ 199 (309)
.+.+...... ..+|.+||-.|+|. |...+.+++..+ .+|++++.+++..+.++.. +.. . .++...
T Consensus 121 ~a~~~l~~~~~~~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~----g~~----~----~~~~~~ 187 (271)
T cd05188 121 TAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKEL----GAD----H----VIDYKE 187 (271)
T ss_pred HHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHh----CCc----e----eccCCc
Confidence 3444433333 36789999999985 666666677655 7899999988776666432 211 0 011111
Q ss_pred CCC-----CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee
Q 021691 200 DDF-----PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP 248 (309)
Q Consensus 200 ~~~-----~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~ 248 (309)
... ......+|+|+.+-. . ......+.+.++++| .++.+..
T Consensus 188 ~~~~~~~~~~~~~~~d~vi~~~~--~----~~~~~~~~~~l~~~G--~~v~~~~ 233 (271)
T cd05188 188 EDLEEELRLTGGGGADVVIDAVG--G----PETLAQALRLLRPGG--RIVVVGG 233 (271)
T ss_pred CCHHHHHHHhcCCCCCEEEECCC--C----HHHHHHHHHhcccCC--EEEEEcc
Confidence 110 012356999986421 1 145666777888888 5555543
No 302
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=92.22 E-value=0.5 Score=40.92 Aligned_cols=71 Identities=10% Similarity=0.033 Sum_probs=41.8
Q ss_pred CCCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCC--cEEEEEcCCHHHHHHHHHHHHh
Q 021691 108 DNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEA--LEVVISDGNPQVVDYIQRNVDA 180 (309)
Q Consensus 108 ~~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~--~~V~~tD~~~~~l~~~~~n~~~ 180 (309)
|++++- +--+++++.+-+.. ..-..+-++-|=-||.|.+--.+....+. ..|+++|+++++++.+++|+..
T Consensus 27 G~p~FP-VRLAsEi~qR~l~~-l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~L 99 (246)
T PF11599_consen 27 GFPAFP-VRLASEIFQRALHY-LEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSL 99 (246)
T ss_dssp TB-----HHHHHHHHHHHHCT-SSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHC
T ss_pred CCCCcc-HHHHHHHHHHHHHh-hcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhh
Confidence 555554 34444444433322 22223458999999999765555554333 5899999999999999999864
No 303
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=92.21 E-value=0.26 Score=45.07 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=49.0
Q ss_pred EEeCCCCC-hhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCC-----CCCCCCCCccEE
Q 021691 139 IELGSGYG-LAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQD-----DFPYIVDTFDVI 212 (309)
Q Consensus 139 LELG~GtG-~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~-----~~~~~~~~fDvI 212 (309)
+|+|.|+- +..+.=|.. .....+++|++...++.++.|+..|++.. .+.+....-... .....+..||++
T Consensus 107 iDIgtgasci~~llg~rq-~n~~f~~teidd~s~~~a~snV~qn~lss---~ikvV~~~~~ktll~d~~~~~~e~~ydFc 182 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQ-NNWYFLATEIDDMSFNYAKSNVEQNNLSS---LIKVVKVEPQKTLLMDALKEESEIIYDFC 182 (419)
T ss_pred eeccCchhhhHHhhhchh-ccceeeeeeccccccchhhcccccccccc---ceeeEEecchhhcchhhhccCccceeeEE
Confidence 67776653 222221222 23678999999999999999999999853 333333211111 011224569999
Q ss_pred EEcCCCCCc
Q 021691 213 VASDCTFFK 221 (309)
Q Consensus 213 i~~d~ly~~ 221 (309)
+|+.++|..
T Consensus 183 McNPPFfe~ 191 (419)
T KOG2912|consen 183 MCNPPFFEN 191 (419)
T ss_pred ecCCchhhc
Confidence 998888754
No 304
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=91.95 E-value=1.5 Score=44.77 Aligned_cols=133 Identities=14% Similarity=0.131 Sum_probs=75.6
Q ss_pred CeEEEeCCCCChhhHHHHHhc-------C-----CcEEEEEcCCHHHHHHHHHHH--------------Hh-----ccC-
Q 021691 136 KRVIELGSGYGLAGLVIAATT-------E-----ALEVVISDGNPQVVDYIQRNV--------------DA-----NSG- 183 (309)
Q Consensus 136 ~~VLELG~GtG~~~l~la~~~-------~-----~~~V~~tD~~~~~l~~~~~n~--------------~~-----n~~- 183 (309)
-+|+|+|=|+|+..++..+.+ + .-+++.++..|-..+.+++.. .. .++
T Consensus 59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 138 (662)
T PRK01747 59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCH 138 (662)
T ss_pred EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCce
Confidence 589999999998877766444 1 137899997552222222211 11 011
Q ss_pred --CCCCCceEEEEeeCCCCC--CCCCCCCccEEEEcCCCC---Cccc-HHHHHHHHHHHHhcCCCeEEEEEeecCCchHH
Q 021691 184 --AFGGTTVKSMTLHWNQDD--FPYIVDTFDVIVASDCTF---FKEF-HKDLARIIKFLLKKVGPSEALFFSPKRGDSLD 255 (309)
Q Consensus 184 --~~~~~~v~~~~l~w~~~~--~~~~~~~fDvIi~~d~ly---~~~~-~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~ 255 (309)
.+...++.. .+-|++.. .+.....||+++. |.+- +++. -+.+++.+.+++++++ .+.-++ .-.
T Consensus 139 ~~~~~~~~~~l-~l~~gd~~~~~~~~~~~~d~~~l-D~FsP~~np~~W~~~~~~~l~~~~~~~~--~~~t~t-----~a~ 209 (662)
T PRK01747 139 RLLFDDGRVTL-DLWFGDANELLPQLDARADAWFL-DGFAPAKNPDMWSPNLFNALARLARPGA--TLATFT-----SAG 209 (662)
T ss_pred EEEecCCcEEE-EEEecCHHHHHHhccccccEEEe-CCCCCccChhhccHHHHHHHHHHhCCCC--EEEEee-----hHH
Confidence 001122222 23333321 1223356899987 5332 2221 3679999999999998 333222 224
Q ss_pred HHHHHHHhCCCeEEEEeccCch
Q 021691 256 KFLEEIEGNHLHFSIIENYNAE 277 (309)
Q Consensus 256 ~f~~~~~~~G~~~~~~~~~~~~ 277 (309)
.....+.++||.+.....+..+
T Consensus 210 ~vr~~l~~~GF~v~~~~~~g~k 231 (662)
T PRK01747 210 FVRRGLQEAGFTVRKVKGFGRK 231 (662)
T ss_pred HHHHHHHHcCCeeeecCCCchh
Confidence 5677899999999887766543
No 305
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=91.57 E-value=0.34 Score=43.16 Aligned_cols=46 Identities=20% Similarity=0.284 Sum_probs=33.4
Q ss_pred CCeEEEeCCCCChhhHHHHHhcC--------CcEEEEEcCCHHHHHHHHHHHHh
Q 021691 135 SKRVIELGSGYGLAGLVIAATTE--------ALEVVISDGNPQVVDYIQRNVDA 180 (309)
Q Consensus 135 g~~VLELG~GtG~~~l~la~~~~--------~~~V~~tD~~~~~l~~~~~n~~~ 180 (309)
.-+|+|+|+|.|.++.-+...+. ..+++.+|.||.+.+.-++.+..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 35999999999988877666543 24899999999887777766544
No 306
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=91.46 E-value=1.1 Score=44.12 Aligned_cols=110 Identities=13% Similarity=-0.014 Sum_probs=70.4
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhcC----CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC-C--CCC
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATTE----ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD-F--PYI 205 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~~----~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~-~--~~~ 205 (309)
.++.+|.|--||+|.+-+..++..+ ...+.|.|.++.....++.|+-.+++.. .+.....+--..+ . ...
T Consensus 185 ~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~---~~~i~~~dtl~~~~~~~~~~ 261 (489)
T COG0286 185 EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG---DANIRHGDTLSNPKHDDKDD 261 (489)
T ss_pred CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc---cccccccccccCCcccccCC
Confidence 3556999999999977665555543 2468999999999999999999998842 1111111000001 0 113
Q ss_pred CCCccEEEEcCCCCCc-------------------------ccHHHHHHHHHHHHhcCCCeEEEE
Q 021691 206 VDTFDVIVASDCTFFK-------------------------EFHKDLARIIKFLLKKVGPSEALF 245 (309)
Q Consensus 206 ~~~fDvIi~~d~ly~~-------------------------~~~~~ll~~l~~lLk~~G~~~~ii 245 (309)
...||+|+++.++... ......+..+...|+++|+..+++
T Consensus 262 ~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl 326 (489)
T COG0286 262 KGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVL 326 (489)
T ss_pred ccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEe
Confidence 3679999997766410 112567788888899888433333
No 307
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.36 E-value=0.49 Score=43.31 Aligned_cols=47 Identities=26% Similarity=0.227 Sum_probs=40.6
Q ss_pred cCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHH
Q 021691 130 ADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQR 176 (309)
Q Consensus 130 ~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~ 176 (309)
....+|.+|.=+|.|. |+..+.-|+..|+++++++|+|++=.+.+++
T Consensus 188 Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 188 AKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred cccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence 3556899999999995 8888888899999999999999988887765
No 308
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=91.29 E-value=0.6 Score=44.13 Aligned_cols=109 Identities=17% Similarity=0.077 Sum_probs=66.0
Q ss_pred cCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEee-CCCCCCC-CCC
Q 021691 130 ADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLH-WNQDDFP-YIV 206 (309)
Q Consensus 130 ~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~-w~~~~~~-~~~ 206 (309)
....+|.+||.+|||. |...+.+|+..+..+|+++|.+++.++.++... +.. .+....-+ |...... ...
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~~----vi~~~~~~~~~~~l~~~~~~ 252 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GAE----TINFEEVDDVVEALRELTGG 252 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---CcE----EEcCCcchHHHHHHHHHcCC
Confidence 3456789999999987 888888899887667999999999888887641 110 01100000 1000000 112
Q ss_pred CCccEEEEcCCC---------------CCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 207 DTFDVIVASDCT---------------FFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 207 ~~fDvIi~~d~l---------------y~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
..+|+|+-+--- ....+....+..+.++++++| .++.+.
T Consensus 253 ~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G--~iv~~g 306 (386)
T cd08283 253 RGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGG--TVSIIG 306 (386)
T ss_pred CCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCC--EEEEEc
Confidence 358988774210 001223557788889999998 555554
No 309
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=91.24 E-value=2.3 Score=38.80 Aligned_cols=129 Identities=13% Similarity=0.101 Sum_probs=63.7
Q ss_pred cCCCCeEEEeCCCCChhhHHH-HHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC-CCCCCCCc
Q 021691 132 MFRSKRVIELGSGYGLAGLVI-AATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD-FPYIVDTF 209 (309)
Q Consensus 132 ~~~g~~VLELG~GtG~~~l~l-a~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~-~~~~~~~f 209 (309)
..++++||=||||--.-+++. ....+..+++.++.+++..+.++.-++.-+... ...+.+ ..|.... .......+
T Consensus 121 ~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~-~~~~~~--~~~~~~~~l~~~~~~a 197 (288)
T PRK12749 121 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENT-DCVVTV--TDLADQQAFAEALASA 197 (288)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhcc-CceEEE--echhhhhhhhhhcccC
Confidence 357889999999842223332 233577899999998643334433322211100 011222 2332110 11112468
Q ss_pred cEEEEcCCCCCcccHHH-HHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeE
Q 021691 210 DVIVASDCTFFKEFHKD-LARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHF 268 (309)
Q Consensus 210 DvIi~~d~ly~~~~~~~-ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~ 268 (309)
|+||.+-++-....... ++.. ...++++. ++++.........|++.+++.|.++
T Consensus 198 DivINaTp~Gm~~~~~~~~~~~-~~~l~~~~----~v~D~vY~P~~T~ll~~A~~~G~~~ 252 (288)
T PRK12749 198 DILTNGTKVGMKPLENESLVND-ISLLHPGL----LVTECVYNPHMTKLLQQAQQAGCKT 252 (288)
T ss_pred CEEEECCCCCCCCCCCCCCCCc-HHHCCCCC----EEEEecCCCccCHHHHHHHHCCCeE
Confidence 99999776644221111 1100 12344432 3333222222347999999999876
No 310
>PF14904 FAM86: Family of unknown function
Probab=91.14 E-value=0.086 Score=39.69 Aligned_cols=40 Identities=5% Similarity=0.009 Sum_probs=31.6
Q ss_pred CCCCCCCCchhhHHHHHHHHHhccCCCCCCCchhhhccccccc
Q 021691 4 DNTKTTLRPASLRWKILRQALLRRSSPQNSDEQSQIGVMNRIS 46 (309)
Q Consensus 4 ~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s 46 (309)
|....+||+.+||..+||.+|.+.|+. ..|+.|+|++.+.
T Consensus 58 Plc~k~Pps~kY~~~FLk~lI~k~Ea~---~~EplDeLYeala 97 (100)
T PF14904_consen 58 PLCVKYPPSVKYRRCFLKELIKKHEAV---HCEPLDELYEALA 97 (100)
T ss_pred cchhhCCCchhHHHHHHHHHHHHHHHh---cCCcHHHHHHHHH
Confidence 445679999999999999999999865 3345677777665
No 311
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=91.14 E-value=1.8 Score=37.08 Aligned_cols=134 Identities=15% Similarity=0.035 Sum_probs=70.3
Q ss_pred CcCCCCeEEEeCCCCChhhHHHHHhcCCc-EEEEEcCCH----------HHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691 131 DMFRSKRVIELGSGYGLAGLVIAATTEAL-EVVISDGNP----------QVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ 199 (309)
Q Consensus 131 ~~~~g~~VLELG~GtG~~~l~la~~~~~~-~V~~tD~~~----------~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~ 199 (309)
.+.+|.+|+|+--|.|..+..++...++. .|++.=.++ .+-...++....|.-.++...+ .+.--+
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~---A~~~pq 121 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLV---ALGAPQ 121 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCccc---ccCCCC
Confidence 45689999999999999998888876653 455443222 1111222222223221111111 000000
Q ss_pred CCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC----C---------chHHHHHHHHHhCCC
Q 021691 200 DDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR----G---------DSLDKFLEEIEGNHL 266 (309)
Q Consensus 200 ~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r----~---------~~~~~f~~~~~~~G~ 266 (309)
...-....++|.++-+-.++ ..........+.+.||||| ..++..+.- + -......+..+..||
T Consensus 122 ~~d~~~~~~~yhdmh~k~i~-~~~A~~vna~vf~~LKPGG--v~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGF 198 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNIH-PATAAKVNAAVFKALKPGG--VYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGF 198 (238)
T ss_pred cccccccchhhhhhhccccC-cchHHHHHHHHHHhcCCCc--EEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcc
Confidence 00000112333333322222 5667788899999999999 555554321 1 112345677888999
Q ss_pred eEEE
Q 021691 267 HFSI 270 (309)
Q Consensus 267 ~~~~ 270 (309)
..+-
T Consensus 199 kl~a 202 (238)
T COG4798 199 KLEA 202 (238)
T ss_pred eeee
Confidence 8764
No 312
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=90.61 E-value=0.61 Score=41.82 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=33.5
Q ss_pred HHhhCcCcCCCCeEEEeCCCCChhhHHHHHhc-----CCcEEEEEcCC
Q 021691 125 FSLSHADMFRSKRVIELGSGYGLAGLVIAATT-----EALEVVISDGN 167 (309)
Q Consensus 125 ~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~-----~~~~V~~tD~~ 167 (309)
.+.+..-+.++..++|+|||.|.++..++... +...++++|..
T Consensus 9 ~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~ 56 (259)
T PF05206_consen 9 NLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRA 56 (259)
T ss_pred HHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecC
Confidence 34444344566799999999999999999887 45689999974
No 313
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=90.56 E-value=0.7 Score=42.78 Aligned_cols=49 Identities=24% Similarity=0.333 Sum_probs=42.7
Q ss_pred hCcCcCCCCeEEEeCCC-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHH
Q 021691 128 SHADMFRSKRVIELGSG-YGLAGLVIAATTEALEVVISDGNPQVVDYIQR 176 (309)
Q Consensus 128 ~~~~~~~g~~VLELG~G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~ 176 (309)
......+|.+|.=+||| .|+..+.-|+..++.+++++|++++-++.+++
T Consensus 179 nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~ 228 (366)
T COG1062 179 NTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK 228 (366)
T ss_pred hcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh
Confidence 33456789999999998 59999999999999999999999998888875
No 314
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=90.49 E-value=6.8 Score=35.57 Aligned_cols=121 Identities=15% Similarity=0.006 Sum_probs=64.8
Q ss_pred CCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691 133 FRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV 211 (309)
Q Consensus 133 ~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv 211 (309)
.++++|+=||||- |......+...+..+|+.+|.+++-.+.+.+.+..... .+.+ ..|.+. ......+|+
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~-----~~~~--~~~~~~--~~~~~~aDi 195 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFP-----AARA--TAGSDL--AAALAAADG 195 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCC-----CeEE--Eeccch--HhhhCCCCE
Confidence 4678999999984 54444434445777999999997666555544432211 1122 222211 111245899
Q ss_pred EEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeE
Q 021691 212 IVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHF 268 (309)
Q Consensus 212 Ii~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~ 268 (309)
||.+-++........-+. ...++++. ++++.......-.|++.+++.|.++
T Consensus 196 VInaTp~Gm~~~~~~~~~--~~~l~~~~----~v~DivY~P~~T~ll~~A~~~G~~~ 246 (284)
T PRK12549 196 LVHATPTGMAKHPGLPLP--AELLRPGL----WVADIVYFPLETELLRAARALGCRT 246 (284)
T ss_pred EEECCcCCCCCCCCCCCC--HHHcCCCc----EEEEeeeCCCCCHHHHHHHHCCCeE
Confidence 999765543211100011 13455443 2333221112247999999999875
No 315
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=90.48 E-value=3.2 Score=38.56 Aligned_cols=96 Identities=22% Similarity=0.261 Sum_probs=57.5
Q ss_pred cCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcC---CHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCC
Q 021691 132 MFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDG---NPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVD 207 (309)
Q Consensus 132 ~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~---~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~ 207 (309)
..+|.+||=.|+|. |.+.+.+|+..++ +|++++. +++-++.+++ .+.. .+....-++.. .....
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~----~Ga~----~v~~~~~~~~~---~~~~~ 237 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEE----LGAT----YVNSSKTPVAE---VKLVG 237 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH----cCCE----EecCCccchhh---hhhcC
Confidence 34788999999984 8888888888766 7999986 5655555442 2321 01100001110 01124
Q ss_pred CccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 208 TFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 208 ~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
.+|+|+-+ .- ....+....++++++| .++++.
T Consensus 238 ~~d~vid~--~g----~~~~~~~~~~~l~~~G--~~v~~G 269 (355)
T cd08230 238 EFDLIIEA--TG----VPPLAFEALPALAPNG--VVILFG 269 (355)
T ss_pred CCCEEEEC--cC----CHHHHHHHHHHccCCc--EEEEEe
Confidence 68988764 21 1346677888899999 555544
No 316
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=90.45 E-value=4.8 Score=36.49 Aligned_cols=122 Identities=11% Similarity=0.057 Sum_probs=63.0
Q ss_pred CCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691 133 FRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV 211 (309)
Q Consensus 133 ~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv 211 (309)
.++++||=||||- |......+...+..+|+.++.+++-.+.+...+.... .+ ..+.+.. +.......+|+
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~------~~--~~~~~~~-~~~~~~~~~Di 193 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVG------VI--TRLEGDS-GGLAIEKAAEV 193 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcC------cc--eeccchh-hhhhcccCCCE
Confidence 5689999999984 5444443444677899999998754444433322111 11 1122111 11112256899
Q ss_pred EEEcCCCCCcccHHHHHHHHHHH-----HhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeE
Q 021691 212 IVASDCTFFKEFHKDLARIIKFL-----LKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHF 268 (309)
Q Consensus 212 Ii~~d~ly~~~~~~~ll~~l~~l-----Lk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~ 268 (309)
||.+-++-.......+ ...... +.+. .++++.........|++.+++.|..+
T Consensus 194 VInaTp~g~~~~~~~l-~~~~~~~~~~~~~~~----~~v~D~vY~P~~T~ll~~A~~~G~~~ 250 (282)
T TIGR01809 194 LVSTVPADVPADYVDL-FATVPFLLLKRKSSE----GIFLDAAYDPWPTPLVAIVSAAGWRV 250 (282)
T ss_pred EEECCCCCCCCCHHHh-hhhhhhhccccCCCC----cEEEEEeeCCCCCHHHHHHHHCCCEE
Confidence 9998666543332221 111111 1122 22333222222257999999999776
No 317
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=90.38 E-value=1.3 Score=40.32 Aligned_cols=101 Identities=16% Similarity=0.157 Sum_probs=59.6
Q ss_pred CcCCCCeEEEeCCC-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCc
Q 021691 131 DMFRSKRVIELGSG-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTF 209 (309)
Q Consensus 131 ~~~~g~~VLELG~G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~f 209 (309)
.+.++.+||-.|+| .|...+.+|+..+ .+|++++.+++..+.+++ .+.. ..+......+...........+
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G-~~V~~~~~s~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~~~ 233 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMG-AAVIAVDIKEEKLELAKE----LGAD---EVLNSLDDSPKDKKAAGLGGGF 233 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHH----hCCC---EEEcCCCcCHHHHHHHhcCCCc
Confidence 45678899998887 3777777788765 469999999988777754 2221 0000000000000001123468
Q ss_pred cEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 210 DVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 210 DvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
|+|+.+ .. ....+....+.|+++| .++.+.
T Consensus 234 D~vid~--~g----~~~~~~~~~~~l~~~G--~~v~~g 263 (338)
T cd08254 234 DVIFDF--VG----TQPTFEDAQKAVKPGG--RIVVVG 263 (338)
T ss_pred eEEEEC--CC----CHHHHHHHHHHhhcCC--EEEEEC
Confidence 988753 21 1356777889999999 555543
No 318
>PRK13699 putative methylase; Provisional
Probab=90.38 E-value=1.4 Score=38.61 Aligned_cols=61 Identities=16% Similarity=0.192 Sum_probs=41.5
Q ss_pred CCCCccEEEEcCCCCCc----------------ccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeE
Q 021691 205 IVDTFDVIVASDCTFFK----------------EFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHF 268 (309)
Q Consensus 205 ~~~~fDvIi~~d~ly~~----------------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~ 268 (309)
+++++|+|+. |+.|.. +.....+.++.++||++| .++++...+ ....+...+++.||.+
T Consensus 17 pd~SVDLIiT-DPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg--~l~if~~~~--~~~~~~~al~~~GF~l 91 (227)
T PRK13699 17 PDNAVDFILT-DPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDA--LMVSFYGWN--RVDRFMAAWKNAGFSV 91 (227)
T ss_pred CccccceEEe-CCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCC--EEEEEeccc--cHHHHHHHHHHCCCEE
Confidence 4567899988 666642 224567889999999987 454444333 2356778888999986
Q ss_pred EE
Q 021691 269 SI 270 (309)
Q Consensus 269 ~~ 270 (309)
..
T Consensus 92 ~~ 93 (227)
T PRK13699 92 VG 93 (227)
T ss_pred ee
Confidence 53
No 319
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=90.00 E-value=1.6 Score=43.05 Aligned_cols=121 Identities=18% Similarity=0.174 Sum_probs=70.6
Q ss_pred CCceeecccHHHHHHHHhhC---cCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCC
Q 021691 110 TGLVCHWPSEDVLAFFSLSH---ADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAF 185 (309)
Q Consensus 110 tG~~~~W~sa~~La~~l~~~---~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~ 185 (309)
.|.+.+-+++..+.+++--. ....++.+|+=+|+|. |+..+.+++..|+ .|+++|.+++.++.++. + +..
T Consensus 136 AGy~Avi~Aa~~lgr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~-l---Ga~- 209 (511)
T TIGR00561 136 AGYRAIIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS-M---GAE- 209 (511)
T ss_pred HHHHHHHHHHHHhhhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH-c---CCe-
Confidence 34444555556666554211 1234678999999995 8988888888765 69999999987776664 1 221
Q ss_pred CCCceEEEEeeCC----------CCC--------CCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691 186 GGTTVKSMTLHWN----------QDD--------FPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 186 ~~~~v~~~~l~w~----------~~~--------~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G 239 (309)
.+.+...+-+ ..+ .......+|+|+..-.+-....+.-+.+...+.+|+|+
T Consensus 210 ---~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGs 278 (511)
T TIGR00561 210 ---FLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGS 278 (511)
T ss_pred ---EEeccccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCC
Confidence 0111100000 000 01112469999886544333333346677788888887
No 320
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=89.82 E-value=0.48 Score=36.41 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=23.7
Q ss_pred CCeEEEeCCCCChhhHHHHHhcCCcEEEEEcC
Q 021691 135 SKRVIELGSGYGLAGLVIAATTEALEVVISDG 166 (309)
Q Consensus 135 g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~ 166 (309)
.....|||||.|++--.|.+. +..=.++|.
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 346899999999988877665 667788884
No 321
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=89.73 E-value=2.7 Score=38.22 Aligned_cols=125 Identities=15% Similarity=0.155 Sum_probs=62.7
Q ss_pred cCCCCeEEEeCCCCChhhHHHH---HhcCCcEEEEEcCCHH---HHHHHHHHHHhccCCCCCCceEEEEeeCCCCC-CCC
Q 021691 132 MFRSKRVIELGSGYGLAGLVIA---ATTEALEVVISDGNPQ---VVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD-FPY 204 (309)
Q Consensus 132 ~~~g~~VLELG~GtG~~~l~la---~~~~~~~V~~tD~~~~---~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~-~~~ 204 (309)
...+++||=+|+| |.. .+++ ...|..+|+.++.+++ -.+.+.+.+.... ..+.+...+|.... ...
T Consensus 123 ~~~~k~vlI~GAG-Gag-rAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~-----~~~~~~~~d~~~~~~~~~ 195 (289)
T PRK12548 123 DVKGKKLTVIGAG-GAA-TAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEV-----PECIVNVYDLNDTEKLKA 195 (289)
T ss_pred CcCCCEEEEECCc-HHH-HHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcC-----CCceeEEechhhhhHHHh
Confidence 3568899999997 422 2222 2346667999999863 3333333332211 12233344554321 111
Q ss_pred CCCCccEEEEcCCCCCcccHHH-HHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeE
Q 021691 205 IVDTFDVIVASDCTFFKEFHKD-LARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHF 268 (309)
Q Consensus 205 ~~~~fDvIi~~d~ly~~~~~~~-ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~ 268 (309)
.-..+|+||.+-++-..+..+. .+.. ...|.++. ++++.......-.|++.+++.|.++
T Consensus 196 ~~~~~DilINaTp~Gm~~~~~~~~~~~-~~~l~~~~----~v~D~vY~P~~T~ll~~A~~~G~~~ 255 (289)
T PRK12548 196 EIASSDILVNATLVGMKPNDGETNIKD-TSVFRKDL----VVADTVYNPKKTKLLEDAEAAGCKT 255 (289)
T ss_pred hhccCCEEEEeCCCCCCCCCCCCCCCc-HHhcCCCC----EEEEecCCCCCCHHHHHHHHCCCee
Confidence 1235799998776654221110 1100 13454443 2333222112257999999999865
No 322
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=89.35 E-value=1.5 Score=40.57 Aligned_cols=46 Identities=28% Similarity=0.307 Sum_probs=36.4
Q ss_pred cCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHH
Q 021691 130 ADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQ 175 (309)
Q Consensus 130 ~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~ 175 (309)
....+|.+||=+|+|. |...+.+|+..+...|+++|.+++-++.++
T Consensus 156 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~ 202 (347)
T PRK10309 156 AQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAK 202 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH
Confidence 3455788999999875 888888888887766899999888777664
No 323
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=89.26 E-value=3.7 Score=37.64 Aligned_cols=98 Identities=17% Similarity=0.166 Sum_probs=57.0
Q ss_pred CCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691 133 FRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV 211 (309)
Q Consensus 133 ~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv 211 (309)
.+|.+||-.|+|. |...+.+|+..+..+|++++.+++..+.+++ . +.. .-+.....++. ........+|+
T Consensus 164 ~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~-~---g~~---~vi~~~~~~~~--~~~~~~~~vd~ 234 (339)
T cd08232 164 LAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA-M---GAD---ETVNLARDPLA--AYAADKGDFDV 234 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-c---CCC---EEEcCCchhhh--hhhccCCCccE
Confidence 3789999988874 6666677777765589999988887775543 1 211 00000000000 01111235899
Q ss_pred EEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 212 IVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 212 Ii~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
|+.+-- -...+..+.+.|+++| .++.+.
T Consensus 235 vld~~g------~~~~~~~~~~~L~~~G--~~v~~g 262 (339)
T cd08232 235 VFEASG------APAALASALRVVRPGG--TVVQVG 262 (339)
T ss_pred EEECCC------CHHHHHHHHHHHhcCC--EEEEEe
Confidence 987411 1245677788889998 555443
No 324
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=89.15 E-value=0.41 Score=42.41 Aligned_cols=57 Identities=21% Similarity=0.259 Sum_probs=37.6
Q ss_pred HHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHh
Q 021691 122 LAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDA 180 (309)
Q Consensus 122 La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~ 180 (309)
|+.++.+........+++|+-||+|.+++.+.. .+.+|++-|+++..+...+.-++.
T Consensus 8 l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~--~~~~vi~ND~~~~l~~~~~~~l~~ 64 (260)
T PF02086_consen 8 LAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQ--PGKRVIINDINPDLINFWKAVLKN 64 (260)
T ss_dssp GHHHHHHHS-S-S-SEEEETT-TTSHHHHCC-----SSEEEEEES-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCEEEEEecchhHHHHHhcc--cccceeeeechHHHHHHHHHHHhc
Confidence 555665543222678999999999999988654 477999999999888777644443
No 325
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=89.10 E-value=0.36 Score=44.30 Aligned_cols=49 Identities=10% Similarity=0.079 Sum_probs=37.6
Q ss_pred CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHH
Q 021691 131 DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVD 179 (309)
Q Consensus 131 ~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~ 179 (309)
...++..++|.=-|.|..+..+.+.++..+|++.|.++++++.+++++.
T Consensus 17 ~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~ 65 (310)
T PF01795_consen 17 NPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLK 65 (310)
T ss_dssp T--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTC
T ss_pred CcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHh
Confidence 3556789999999999999999988888999999999999999987765
No 326
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=88.80 E-value=6.2 Score=37.49 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=15.1
Q ss_pred CCeEEEeCCCCChhhHHH
Q 021691 135 SKRVIELGSGYGLAGLVI 152 (309)
Q Consensus 135 g~~VLELG~GtG~~~l~l 152 (309)
..+|+|+|||+|..++.+
T Consensus 64 ~~~iaDlGcs~G~ntl~~ 81 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHI 81 (386)
T ss_pred ceeEEEecCCCCccHHHH
Confidence 568999999999887654
No 327
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=88.65 E-value=1.6 Score=39.22 Aligned_cols=101 Identities=20% Similarity=0.174 Sum_probs=60.1
Q ss_pred CcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCc
Q 021691 131 DMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTF 209 (309)
Q Consensus 131 ~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~f 209 (309)
...+|.+||=.|+|. |...+.+|+..+..+|+++|.+++-++.+++ .+.. .-+..... ............+
T Consensus 117 ~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~~~~~-~~~~~~~~~~~g~ 188 (280)
T TIGR03366 117 GDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGAT---ALAEPEVL-AERQGGLQNGRGV 188 (280)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc---EecCchhh-HHHHHHHhCCCCC
Confidence 344789999999984 8888888888877679999988877666654 2221 00000000 0000000012358
Q ss_pred cEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 210 DVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 210 DvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
|+|+-+ .- ....++...++++++| .++.+.
T Consensus 189 d~vid~--~G----~~~~~~~~~~~l~~~G--~iv~~G 218 (280)
T TIGR03366 189 DVALEF--SG----ATAAVRACLESLDVGG--TAVLAG 218 (280)
T ss_pred CEEEEC--CC----ChHHHHHHHHHhcCCC--EEEEec
Confidence 988763 11 2346677788899999 565555
No 328
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=88.43 E-value=15 Score=32.62 Aligned_cols=128 Identities=16% Similarity=0.128 Sum_probs=70.1
Q ss_pred CCCceeecccHH-HHHHHHhh---CcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccC
Q 021691 109 NTGLVCHWPSED-VLAFFSLS---HADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSG 183 (309)
Q Consensus 109 ~tG~~~~W~sa~-~La~~l~~---~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~ 183 (309)
..=++ +|..-. .||.-++- +.++.+|.+||=||+++|..--.++...+ ..-|++++.++..=..+- |+...
T Consensus 128 kvEyR-VWnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~-nmAkk-- 203 (317)
T KOG1596|consen 128 KVEYR-VWNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLI-NMAKK-- 203 (317)
T ss_pred cEEEE-EeChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHH-HHhhc--
Confidence 34445 898743 36666653 56778999999999999965444444443 356899998764332221 11110
Q ss_pred CCCCCceEEEEeeCCCCC-CCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEE
Q 021691 184 AFGGTTVKSMTLHWNQDD-FPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALF 245 (309)
Q Consensus 184 ~~~~~~v~~~~l~w~~~~-~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii 245 (309)
+.+|....-|-..+. ...+-+..|+|++ |+.. ++....+.-..+.+|+++|...+-+
T Consensus 204 ---RtNiiPIiEDArhP~KYRmlVgmVDvIFa-Dvaq-pdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 204 ---RTNIIPIIEDARHPAKYRMLVGMVDVIFA-DVAQ-PDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred ---cCCceeeeccCCCchheeeeeeeEEEEec-cCCC-chhhhhhhhhhhhhhccCCeEEEEE
Confidence 122211111111110 0112345788877 6544 3334455567788999999544333
No 329
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=88.42 E-value=5.8 Score=35.10 Aligned_cols=98 Identities=21% Similarity=0.173 Sum_probs=58.4
Q ss_pred CcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCC
Q 021691 129 HADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVD 207 (309)
Q Consensus 129 ~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~ 207 (309)
.....+|.+||=.|+|. |...+.+|+..+..+|++++.+++-.+.+++. +.. ..+ ....... ....
T Consensus 92 ~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~---~~~----~~~~~~~--~~~~ 158 (277)
T cd08255 92 DAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPA---DPV----AADTADE--IGGR 158 (277)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCC---ccc----cccchhh--hcCC
Confidence 34556788999998874 77777778877765599999988877655542 210 000 0000000 1124
Q ss_pred CccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 208 TFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 208 ~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
.+|+|+-. ... ...+....+.++++| .++.+.
T Consensus 159 ~~d~vl~~--~~~----~~~~~~~~~~l~~~g--~~~~~g 190 (277)
T cd08255 159 GADVVIEA--SGS----PSALETALRLLRDRG--RVVLVG 190 (277)
T ss_pred CCCEEEEc--cCC----hHHHHHHHHHhcCCc--EEEEEe
Confidence 58988852 111 345677778888888 455443
No 330
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=88.26 E-value=1.9 Score=39.28 Aligned_cols=62 Identities=15% Similarity=0.025 Sum_probs=49.5
Q ss_pred HHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCC-cEEEEEcCCHHHHHHHHHHHHhcc
Q 021691 121 VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEA-LEVVISDGNPQVVDYIQRNVDANS 182 (309)
Q Consensus 121 ~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~-~~V~~tD~~~~~l~~~~~n~~~n~ 182 (309)
+|.+-+.......++...+|.=-|.|..+.++.+.++. ++++++|.+|.+++.+++....++
T Consensus 10 VLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~ 72 (314)
T COG0275 10 VLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD 72 (314)
T ss_pred hHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC
Confidence 45555555556667789999988999999888888764 569999999999999999886644
No 331
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=87.90 E-value=1.4 Score=35.74 Aligned_cols=44 Identities=18% Similarity=0.276 Sum_probs=28.4
Q ss_pred EeCCCCC--hhhHHHH--HhcCCcEEEEEcCCHHHHHHHHHH--HHhccC
Q 021691 140 ELGSGYG--LAGLVIA--ATTEALEVVISDGNPQVVDYIQRN--VDANSG 183 (309)
Q Consensus 140 ELG~GtG--~~~l~la--~~~~~~~V~~tD~~~~~l~~~~~n--~~~n~~ 183 (309)
|+||+.| ......+ ...+..+|+++|.+|..++.+++| +..|..
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~ 50 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDK 50 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCC
Confidence 8999999 4433332 344567899999999999999999 777643
No 332
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=87.23 E-value=11 Score=34.61 Aligned_cols=65 Identities=15% Similarity=0.094 Sum_probs=43.9
Q ss_pred CCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee-----cC----------CchHHHHHHHHHhCCCeEEEE
Q 021691 207 DTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP-----KR----------GDSLDKFLEEIEGNHLHFSII 271 (309)
Q Consensus 207 ~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~-----~r----------~~~~~~f~~~~~~~G~~~~~~ 271 (309)
+.||+|+-+--+--...+-..++++..+|+||| .-+=+.| .. .-+.+.....++..||.+...
T Consensus 258 ~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GG--vWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke 335 (369)
T KOG2798|consen 258 GSYDVVVTCFFIDTAHNILEYIDTIYKILKPGG--VWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKE 335 (369)
T ss_pred CccceEEEEEEeechHHHHHHHHHHHHhccCCc--EEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEe
Confidence 469999886332234567778899999999999 2222221 11 235677888888999998765
Q ss_pred ec
Q 021691 272 EN 273 (309)
Q Consensus 272 ~~ 273 (309)
+.
T Consensus 336 ~~ 337 (369)
T KOG2798|consen 336 RG 337 (369)
T ss_pred ee
Confidence 53
No 333
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=87.22 E-value=10 Score=32.96 Aligned_cols=113 Identities=18% Similarity=0.112 Sum_probs=60.4
Q ss_pred HHHHhhCcCcCCCCeEEEeCCCCC----hhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC
Q 021691 123 AFFSLSHADMFRSKRVIELGSGYG----LAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN 198 (309)
Q Consensus 123 a~~l~~~~~~~~g~~VLELG~GtG----~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~ 198 (309)
++|+.....-..-+.++|..|+.| .++++.|++.-+++++++-.+++.+...++.+...+.. ..+.+...
T Consensus 30 aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~---~~vEfvvg--- 103 (218)
T PF07279_consen 30 AEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLS---DVVEFVVG--- 103 (218)
T ss_pred HHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcccc---ccceEEec---
Confidence 344433333334578999977643 34455555544568888888888777777777665552 22333322
Q ss_pred CCC--CCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 199 QDD--FPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 199 ~~~--~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
+.. .-..-...|+++. ||= .+.....+.++++.+.+..+++..
T Consensus 104 ~~~e~~~~~~~~iDF~vV-Dc~-----~~d~~~~vl~~~~~~~~GaVVV~~ 148 (218)
T PF07279_consen 104 EAPEEVMPGLKGIDFVVV-DCK-----REDFAARVLRAAKLSPRGAVVVCY 148 (218)
T ss_pred CCHHHHHhhccCCCEEEE-eCC-----chhHHHHHHHHhccCCCceEEEEe
Confidence 211 1111246888887 553 333443444455544333444443
No 334
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=87.14 E-value=9.1 Score=31.77 Aligned_cols=112 Identities=20% Similarity=0.272 Sum_probs=68.3
Q ss_pred HHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC
Q 021691 119 EDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN 198 (309)
Q Consensus 119 a~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~ 198 (309)
+..|++.+.... ..+.+|+=|||=+-...+.- ...+..++++.|++... ...+- + .+...|..
T Consensus 12 ~~~l~~~l~~~~--~~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF--------~~~~~-----~-~F~fyD~~ 74 (162)
T PF10237_consen 12 AEFLARELLDGA--LDDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRF--------EQFGG-----D-EFVFYDYN 74 (162)
T ss_pred HHHHHHHHHHhc--CCCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchH--------HhcCC-----c-ceEECCCC
Confidence 455677666532 24579999999765555442 12356789999998643 11111 1 23345544
Q ss_pred CCCC--CCCCCCccEEEEcCCCCC-cccHHHHHHHHHHHHhcCCCeEEEEEeecC
Q 021691 199 QDDF--PYIVDTFDVIVASDCTFF-KEFHKDLARIIKFLLKKVGPSEALFFSPKR 250 (309)
Q Consensus 199 ~~~~--~~~~~~fDvIi~~d~ly~-~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r 250 (309)
.+.. ....++||+|++ |+.|- .+.......+++.++++++ .+++++...
T Consensus 75 ~p~~~~~~l~~~~d~vv~-DPPFl~~ec~~k~a~ti~~L~k~~~--kii~~Tg~~ 126 (162)
T PF10237_consen 75 EPEELPEELKGKFDVVVI-DPPFLSEECLTKTAETIRLLLKPGG--KIILCTGEE 126 (162)
T ss_pred ChhhhhhhcCCCceEEEE-CCCCCCHHHHHHHHHHHHHHhCccc--eEEEecHHH
Confidence 3321 123579999999 55554 5555677788888888876 666666543
No 335
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=87.08 E-value=8.2 Score=36.63 Aligned_cols=109 Identities=16% Similarity=0.123 Sum_probs=68.1
Q ss_pred ecccHHH-HHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEE
Q 021691 115 HWPSEDV-LAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSM 193 (309)
Q Consensus 115 ~W~sa~~-La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~ 193 (309)
-|+|+.. |-+++.... ..+ +|+=++=.-|.++..++.. +. ...+| +--.-..++.|++.|++.. ..++.
T Consensus 27 awdaade~ll~~~~~~~--~~~-~~~i~nd~fGal~~~l~~~-~~--~~~~d-s~~~~~~~~~n~~~n~~~~--~~~~~- 96 (378)
T PRK15001 27 AWEAADEYLLQQLDDTE--IRG-PVLILNDAFGALSCALAEH-KP--YSIGD-SYISELATRENLRLNGIDE--SSVKF- 96 (378)
T ss_pred ccccHHHHHHHHHhhcc--cCC-CEEEEcCchhHHHHHHHhC-CC--Ceeeh-HHHHHHHHHHHHHHcCCCc--cccee-
Confidence 8999765 455554421 123 7999999999999988753 22 23356 4444556788999998742 11222
Q ss_pred EeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691 194 TLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 194 ~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G 239 (309)
++ ..+.+...+|+|+. -+.-.....+..+..+...+.+++
T Consensus 97 -~~----~~~~~~~~~d~vl~-~~PK~~~~l~~~l~~l~~~l~~~~ 136 (378)
T PRK15001 97 -LD----STADYPQQPGVVLI-KVPKTLALLEQQLRALRKVVTSDT 136 (378)
T ss_pred -ec----ccccccCCCCEEEE-EeCCCHHHHHHHHHHHHhhCCCCC
Confidence 21 11223456999988 233334456667778888888888
No 336
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=87.03 E-value=2.5 Score=38.81 Aligned_cols=101 Identities=10% Similarity=0.060 Sum_probs=57.0
Q ss_pred cCCC--CeEEEeCC-C-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCC
Q 021691 132 MFRS--KRVIELGS-G-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVD 207 (309)
Q Consensus 132 ~~~g--~~VLELG~-G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~ 207 (309)
..+| .+||=.|+ | .|...+.+|+..|+.+|++++.+++-.+.+++.+ +.. .-+.....+|...-......
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~l---Ga~---~vi~~~~~~~~~~i~~~~~~ 223 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSEL---GFD---AAINYKTDNVAERLRELCPE 223 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhc---CCc---EEEECCCCCHHHHHHHHCCC
Confidence 4444 89998886 4 5888888888877658999998887666665432 221 00110000110000001124
Q ss_pred CccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 208 TFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 208 ~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
.+|+|+-+ +-. ..+....+.|+++| .++.+.
T Consensus 224 gvd~vid~--~g~-----~~~~~~~~~l~~~G--~iv~~G 254 (345)
T cd08293 224 GVDVYFDN--VGG-----EISDTVISQMNENS--HIILCG 254 (345)
T ss_pred CceEEEEC--CCc-----HHHHHHHHHhccCC--EEEEEe
Confidence 68999853 221 12466778899999 455443
No 337
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=87.02 E-value=1.8 Score=34.60 Aligned_cols=79 Identities=15% Similarity=0.249 Sum_probs=47.7
Q ss_pred cCCCCeEEEeCCC-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691 132 MFRSKRVIELGSG-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD 210 (309)
Q Consensus 132 ~~~g~~VLELG~G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD 210 (309)
...+++||=+|+| +|..........+..+|+.+..+.+-.+.+.+.+ .+ ..+.+. .|.+. ......+|
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~--~~-----~~~~~~--~~~~~--~~~~~~~D 77 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF--GG-----VNIEAI--PLEDL--EEALQEAD 77 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH--TG-----CSEEEE--EGGGH--CHHHHTES
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc--Cc-----ccccee--eHHHH--HHHHhhCC
Confidence 4679999999998 3544443334457788999999977666555554 11 123333 33221 11235799
Q ss_pred EEEEcCCCCCc
Q 021691 211 VIVASDCTFFK 221 (309)
Q Consensus 211 vIi~~d~ly~~ 221 (309)
+|+.+-..-..
T Consensus 78 ivI~aT~~~~~ 88 (135)
T PF01488_consen 78 IVINATPSGMP 88 (135)
T ss_dssp EEEE-SSTTST
T ss_pred eEEEecCCCCc
Confidence 99997655443
No 338
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=86.82 E-value=12 Score=32.62 Aligned_cols=80 Identities=14% Similarity=0.265 Sum_probs=48.0
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC--------
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF-------- 202 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~-------- 202 (309)
+.|++||=.|+ +|.+|..+++.+ .+.+|++++.+++.++.+...+...+ .++.....|..+...
T Consensus 8 ~~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~-----~~~~~~~~D~~~~~~~~~~~~~~ 81 (255)
T PRK07523 8 LTGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG-----LSAHALAFDVTDHDAVRAAIDAF 81 (255)
T ss_pred CCCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-----ceEEEEEccCCCHHHHHHHHHHH
Confidence 46889998886 555566655543 25689999998877766655554432 234444455443221
Q ss_pred CCCCCCccEEEEcCCC
Q 021691 203 PYIVDTFDVIVASDCT 218 (309)
Q Consensus 203 ~~~~~~fDvIi~~d~l 218 (309)
....+..|+|+.+...
T Consensus 82 ~~~~~~~d~li~~ag~ 97 (255)
T PRK07523 82 EAEIGPIDILVNNAGM 97 (255)
T ss_pred HHhcCCCCEEEECCCC
Confidence 0012467988886644
No 339
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=86.74 E-value=3.3 Score=38.53 Aligned_cols=102 Identities=16% Similarity=0.081 Sum_probs=59.0
Q ss_pred cCcCCCCeEEEeCC-C-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEe-eCCCCCCCCCC
Q 021691 130 ADMFRSKRVIELGS-G-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTL-HWNQDDFPYIV 206 (309)
Q Consensus 130 ~~~~~g~~VLELG~-G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l-~w~~~~~~~~~ 206 (309)
....+|.+||=.|+ | .|...+.+|+..|. +|++++.+++-.+.+++. .+.. .-+....- ++.........
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~~---lGa~---~vi~~~~~~~~~~~i~~~~~ 226 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKNK---LGFD---EAFNYKEEPDLDAALKRYFP 226 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHh---cCCC---EEEECCCcccHHHHHHHHCC
Confidence 35567899999998 4 58888888888764 799999888766666432 2221 00110000 01000000012
Q ss_pred CCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 207 DTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 207 ~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
..+|+|+- ++- ...+....++++++| .++++.
T Consensus 227 ~gvD~v~d--~vG-----~~~~~~~~~~l~~~G--~iv~~G 258 (348)
T PLN03154 227 EGIDIYFD--NVG-----GDMLDAALLNMKIHG--RIAVCG 258 (348)
T ss_pred CCcEEEEE--CCC-----HHHHHHHHHHhccCC--EEEEEC
Confidence 35898875 322 235677788899999 455443
No 340
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=86.57 E-value=1.6 Score=34.58 Aligned_cols=44 Identities=18% Similarity=0.346 Sum_probs=28.5
Q ss_pred HHHHHHhhCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHH
Q 021691 121 VLAFFSLSHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQ 169 (309)
Q Consensus 121 ~La~~l~~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~ 169 (309)
.+|+|+..+. ...+|.|+|-|. --++..|++. +..|++||+++.
T Consensus 3 ~~a~~ia~~~---~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~ 47 (127)
T PF03686_consen 3 DFAEYIARLN---NYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR 47 (127)
T ss_dssp HHHHHHHHHS----SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S
T ss_pred hHHHHHHHhC---CCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc
Confidence 4677877543 334999999996 5666666665 479999999986
No 341
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=86.03 E-value=5 Score=36.24 Aligned_cols=119 Identities=13% Similarity=0.122 Sum_probs=63.0
Q ss_pred cCCCCeEEEeCCC-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691 132 MFRSKRVIELGSG-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD 210 (309)
Q Consensus 132 ~~~g~~VLELG~G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD 210 (309)
...+++||=+|+| .|..........+..+|+.++.+++-.+.+.+.+.... .+.. ++ ........+|
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~------~~~~---~~---~~~~~~~~~D 187 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALG------KAEL---DL---ELQEELADFD 187 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc------ceee---cc---cchhccccCC
Confidence 3568899999997 24333322233455799999999876666555443211 1111 11 1111225689
Q ss_pred EEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee-cCCchHHHHHHHHHhCCCeE
Q 021691 211 VIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP-KRGDSLDKFLEEIEGNHLHF 268 (309)
Q Consensus 211 vIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~-~r~~~~~~f~~~~~~~G~~~ 268 (309)
+||.+-+.-.....+. .......++++. ++++. +++ ....|++.+++.|..+
T Consensus 188 ivInaTp~g~~~~~~~-~~~~~~~l~~~~----~v~DivY~P-~~T~ll~~A~~~G~~~ 240 (278)
T PRK00258 188 LIINATSAGMSGELPL-PPLPLSLLRPGT----IVYDMIYGP-LPTPFLAWAKAQGART 240 (278)
T ss_pred EEEECCcCCCCCCCCC-CCCCHHHcCCCC----EEEEeecCC-CCCHHHHHHHHCcCee
Confidence 9999766543221100 000113344433 23332 232 2247999999999866
No 342
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=85.24 E-value=3.1 Score=38.19 Aligned_cols=99 Identities=19% Similarity=0.234 Sum_probs=59.4
Q ss_pred CcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC----C
Q 021691 129 HADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF----P 203 (309)
Q Consensus 129 ~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~----~ 203 (309)
.....+|.+||=+|+|. |...+.+|+..++.+|+++|.+++-.+.+++. +.. .+ ++...... .
T Consensus 158 ~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----ga~----~~----i~~~~~~~~~~~~ 225 (339)
T cd08239 158 RVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----GAD----FV----INSGQDDVQEIRE 225 (339)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC----EE----EcCCcchHHHHHH
Confidence 34556799999999874 77777788888776699999988776666432 221 00 11111000 0
Q ss_pred -CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 204 -YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 204 -~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
.....+|+|+-+ .-. ...+....++|+++| .++++.
T Consensus 226 ~~~~~~~d~vid~--~g~----~~~~~~~~~~l~~~G--~~v~~g 262 (339)
T cd08239 226 LTSGAGADVAIEC--SGN----TAARRLALEAVRPWG--RLVLVG 262 (339)
T ss_pred HhCCCCCCEEEEC--CCC----HHHHHHHHHHhhcCC--EEEEEc
Confidence 112368998853 211 334556667889998 555544
No 343
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=85.22 E-value=3 Score=40.26 Aligned_cols=88 Identities=17% Similarity=0.277 Sum_probs=53.8
Q ss_pred CcCCCCeEEEeCCCCChhhHHHHHhcCC--cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-CCCC
Q 021691 131 DMFRSKRVIELGSGYGLAGLVIAATTEA--LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP-YIVD 207 (309)
Q Consensus 131 ~~~~g~~VLELG~GtG~~~l~la~~~~~--~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~-~~~~ 207 (309)
..++...++|+|+|+|.-+-++-...+. ..++.||.+..|+.....+... +..++. +-+..+.......+ ....
T Consensus 197 p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~-~~~~g~--~~v~~~~~~r~~~pi~~~~ 273 (491)
T KOG2539|consen 197 PKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD-GSHIGE--PIVRKLVFHRQRLPIDIKN 273 (491)
T ss_pred cccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcC-hhhcCc--hhccccchhcccCCCCccc
Confidence 4456678999999987655544444443 5799999999999988887754 221111 11111111111122 2245
Q ss_pred CccEEEEcCCCCCc
Q 021691 208 TFDVIVASDCTFFK 221 (309)
Q Consensus 208 ~fDvIi~~d~ly~~ 221 (309)
.||+|+++..+++.
T Consensus 274 ~yDlvi~ah~l~~~ 287 (491)
T KOG2539|consen 274 GYDLVICAHKLHEL 287 (491)
T ss_pred ceeeEEeeeeeecc
Confidence 69999999988774
No 344
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=85.07 E-value=1.8 Score=37.19 Aligned_cols=35 Identities=26% Similarity=0.393 Sum_probs=25.0
Q ss_pred CCCCeEEEeCCCC-Chh-hHHHHHhcCCcEEEEEcCCH
Q 021691 133 FRSKRVIELGSGY-GLA-GLVIAATTEALEVVISDGNP 168 (309)
Q Consensus 133 ~~g~~VLELG~Gt-G~~-~l~la~~~~~~~V~~tD~~~ 168 (309)
..+++||=+|||. |.. ...|+ ..|..+++.+|.+.
T Consensus 19 l~~~~VlviG~GglGs~ia~~La-~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLA-GAGVGTIVIVDDDH 55 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHH-HcCCCeEEEecCCE
Confidence 4578999999984 543 34444 45778999999773
No 345
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=84.89 E-value=15 Score=31.97 Aligned_cols=80 Identities=15% Similarity=0.258 Sum_probs=48.5
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-------
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP------- 203 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~------- 203 (309)
+.|++||=.|++.| +|..+++.+ .+.+|++++.+++.++.+...++..+. ++.....|..+...-
T Consensus 9 ~~~k~ilItGas~~-IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~Dl~~~~~~~~~~~~~ 82 (256)
T PRK06124 9 LAGQVALVTGSARG-LGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGG-----AAEALAFDIADEEAVAAAFARI 82 (256)
T ss_pred CCCCEEEEECCCch-HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCC-----ceEEEEccCCCHHHHHHHHHHH
Confidence 57899998886544 455444432 256999999998777766665554332 345556665543210
Q ss_pred -CCCCCccEEEEcCCC
Q 021691 204 -YIVDTFDVIVASDCT 218 (309)
Q Consensus 204 -~~~~~fDvIi~~d~l 218 (309)
...+++|+|+.+-..
T Consensus 83 ~~~~~~id~vi~~ag~ 98 (256)
T PRK06124 83 DAEHGRLDILVNNVGA 98 (256)
T ss_pred HHhcCCCCEEEECCCC
Confidence 012467998876543
No 346
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=84.86 E-value=36 Score=34.22 Aligned_cols=86 Identities=10% Similarity=0.037 Sum_probs=49.8
Q ss_pred cCcCCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCC----CCCceEEEEeeCCCCCC-
Q 021691 130 ADMFRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAF----GGTTVKSMTLHWNQDDF- 202 (309)
Q Consensus 130 ~~~~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~----~~~~v~~~~l~w~~~~~- 202 (309)
.+...|++||=.|+. |.+|..+++.+ .+.+|++++.+.+-++.+...+....+.. ...++.+...|..+.+.
T Consensus 75 ~~~~~gKvVLVTGAT-GgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI 153 (576)
T PLN03209 75 LDTKDEDLAFVAGAT-GKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI 153 (576)
T ss_pred cccCCCCEEEEECCC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence 456678899988874 55666655443 35689999998877666555443322110 01235566666554321
Q ss_pred CCCCCCccEEEEcC
Q 021691 203 PYIVDTFDVIVASD 216 (309)
Q Consensus 203 ~~~~~~fDvIi~~d 216 (309)
...-+..|+||.+-
T Consensus 154 ~~aLggiDiVVn~A 167 (576)
T PLN03209 154 GPALGNASVVICCI 167 (576)
T ss_pred HHHhcCCCEEEEcc
Confidence 11124689888754
No 347
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=84.81 E-value=3.4 Score=38.13 Aligned_cols=99 Identities=13% Similarity=0.165 Sum_probs=56.8
Q ss_pred CCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691 134 RSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI 212 (309)
Q Consensus 134 ~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI 212 (309)
+|.+||=.|+|. |...+.+|+..+..+|++++.+++-.+.+++ .+.. .-+.....++.........+.+|+|
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~~~d~v 247 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA----AGAD---VVVNGSDPDAAKRIIKAAGGGVDAV 247 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc---EEecCCCccHHHHHHHHhCCCCcEE
Confidence 678999998874 7777778888877789999988877666643 1221 0000000011000000111268998
Q ss_pred EEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 213 VASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 213 i~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
+.+ .- ....+....+.|+++| .++.+.
T Consensus 248 id~--~g----~~~~~~~~~~~l~~~g--~~v~~g 274 (350)
T cd08240 248 IDF--VN----NSATASLAFDILAKGG--KLVLVG 274 (350)
T ss_pred EEC--CC----CHHHHHHHHHHhhcCC--eEEEEC
Confidence 863 11 1345777788888888 454443
No 348
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=84.56 E-value=15 Score=33.42 Aligned_cols=99 Identities=16% Similarity=0.195 Sum_probs=59.0
Q ss_pred CcCcCCCCeEEEeCCC-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC----CC
Q 021691 129 HADMFRSKRVIELGSG-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD----FP 203 (309)
Q Consensus 129 ~~~~~~g~~VLELG~G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~----~~ 203 (309)
.....+|.+||-.|+| .|...+.+|+..+...|++++.+++..+.+++. +.. .+ ++-.... ..
T Consensus 154 ~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~------~~--~~~~~~~~~~~~~ 221 (334)
T cd08234 154 LLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----GAT------ET--VDPSREDPEAQKE 221 (334)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCe------EE--ecCCCCCHHHHHH
Confidence 3455678899999876 366666777776655589999888877766432 221 00 1100110 01
Q ss_pred CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 204 YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 204 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
.....+|+|+.+ .. ....+....+.|+++| .++.+.
T Consensus 222 ~~~~~vd~v~~~--~~----~~~~~~~~~~~l~~~G--~~v~~g 257 (334)
T cd08234 222 DNPYGFDVVIEA--TG----VPKTLEQAIEYARRGG--TVLVFG 257 (334)
T ss_pred hcCCCCcEEEEC--CC----ChHHHHHHHHHHhcCC--EEEEEe
Confidence 123568999863 11 1356677778888988 455443
No 349
>PLN02740 Alcohol dehydrogenase-like
Probab=84.54 E-value=2.2 Score=40.16 Aligned_cols=47 Identities=26% Similarity=0.211 Sum_probs=38.3
Q ss_pred cCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHH
Q 021691 130 ADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQR 176 (309)
Q Consensus 130 ~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~ 176 (309)
....+|.+||=+|+|. |...+.+|+..++.+|+++|.+++-++.+++
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 3566789999999984 8888888888877689999999887777754
No 350
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=84.53 E-value=3.3 Score=38.35 Aligned_cols=46 Identities=26% Similarity=0.315 Sum_probs=36.9
Q ss_pred cCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHH
Q 021691 130 ADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQR 176 (309)
Q Consensus 130 ~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~ 176 (309)
....+|.+||=+|+|. |...+.+|+..+. +|+++|.+++-++.+++
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG 208 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence 4456789999999975 8888888888765 79999999987777653
No 351
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=84.25 E-value=1.2 Score=36.86 Aligned_cols=115 Identities=13% Similarity=0.099 Sum_probs=64.8
Q ss_pred EEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEc
Q 021691 138 VIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVAS 215 (309)
Q Consensus 138 VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~ 215 (309)
|-=+|.| ..|..+|+.+ .+.+|++-|.+++..+.+.+. +. .. . ..........|+|+..
T Consensus 4 Ig~IGlG--~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~----g~-------~~--~----~s~~e~~~~~dvvi~~ 64 (163)
T PF03446_consen 4 IGFIGLG--NMGSAMARNLAKAGYEVTVYDRSPEKAEALAEA----GA-------EV--A----DSPAEAAEQADVVILC 64 (163)
T ss_dssp EEEE--S--HHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT----TE-------EE--E----SSHHHHHHHBSEEEE-
T ss_pred EEEEchH--HHHHHHHHHHHhcCCeEEeeccchhhhhhhHHh----hh-------hh--h----hhhhhHhhcccceEee
Confidence 3335554 4555544432 257899999998777666542 11 00 0 1111112345988884
Q ss_pred CCCCCcccHHHHHHH--HHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEeccC
Q 021691 216 DCTFFKEFHKDLARI--IKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYN 275 (309)
Q Consensus 216 d~ly~~~~~~~ll~~--l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~~~ 275 (309)
+.+......++.. +...|+++. .++-+++..+.+..++.+.+.+.|..+.......
T Consensus 65 --v~~~~~v~~v~~~~~i~~~l~~g~--iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~G 122 (163)
T PF03446_consen 65 --VPDDDAVEAVLFGENILAGLRPGK--IIIDMSTISPETSRELAERLAAKGVRYVDAPVSG 122 (163)
T ss_dssp --SSSHHHHHHHHHCTTHGGGS-TTE--EEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEES
T ss_pred --cccchhhhhhhhhhHHhhccccce--EEEecCCcchhhhhhhhhhhhhccceeeeeeeec
Confidence 4455555566555 555555554 5566667778888899999999998877665544
No 352
>PRK07904 short chain dehydrogenase; Provisional
Probab=84.15 E-value=19 Score=31.67 Aligned_cols=78 Identities=17% Similarity=0.169 Sum_probs=45.9
Q ss_pred CCCeEEEeCCCCChhhHHHHHhc---CCcEEEEEcCCHHH-HHHHHHHHHhccCCCCCCceEEEEeeCCCCCC-----CC
Q 021691 134 RSKRVIELGSGYGLAGLVIAATT---EALEVVISDGNPQV-VDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF-----PY 204 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~---~~~~V~~tD~~~~~-l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~-----~~ 204 (309)
.+++||=.|++.| +|..+|+.+ ++.+|++++.+++- ++.+.+.+...+. .++.+..+|..+... ..
T Consensus 7 ~~~~vlItGas~g-iG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~----~~v~~~~~D~~~~~~~~~~~~~ 81 (253)
T PRK07904 7 NPQTILLLGGTSE-IGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGA----SSVEVIDFDALDTDSHPKVIDA 81 (253)
T ss_pred CCcEEEEEcCCcH-HHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCC----CceEEEEecCCChHHHHHHHHH
Confidence 4678999998554 455555432 34699999988764 6655555544321 245666666654321 00
Q ss_pred --CCCCccEEEEcC
Q 021691 205 --IVDTFDVIVASD 216 (309)
Q Consensus 205 --~~~~fDvIi~~d 216 (309)
..+..|+++.+-
T Consensus 82 ~~~~g~id~li~~a 95 (253)
T PRK07904 82 AFAGGDVDVAIVAF 95 (253)
T ss_pred HHhcCCCCEEEEee
Confidence 114789887643
No 353
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=84.12 E-value=16 Score=29.17 Aligned_cols=114 Identities=18% Similarity=0.144 Sum_probs=58.7
Q ss_pred CCCCeEEEeCCCCChhhHHHHH---hcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCc
Q 021691 133 FRSKRVIELGSGYGLAGLVIAA---TTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTF 209 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~---~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~f 209 (309)
.++++|+=+|+| ..|..++. ..+..+|+++|.+++-.+.+.+.+..... .+.+ .++ .......
T Consensus 17 ~~~~~i~iiG~G--~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~-----~~~~--~~~-----~~~~~~~ 82 (155)
T cd01065 17 LKGKKVLILGAG--GAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGI-----AIAY--LDL-----EELLAEA 82 (155)
T ss_pred CCCCEEEEECCc--HHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccc-----ceee--cch-----hhccccC
Confidence 567899999986 33333332 22346899999998766655444332110 0111 111 1113568
Q ss_pred cEEEEcCCCCCc--ccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeE
Q 021691 210 DVIVASDCTFFK--EFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHF 268 (309)
Q Consensus 210 DvIi~~d~ly~~--~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~ 268 (309)
|+|+.+-+.... .... +. ...++++. .++-.+.....+ .+.+.+++.|..+
T Consensus 83 Dvvi~~~~~~~~~~~~~~--~~--~~~~~~~~--~v~D~~~~~~~~--~l~~~~~~~g~~~ 135 (155)
T cd01065 83 DLIINTTPVGMKPGDELP--LP--PSLLKPGG--VVYDVVYNPLET--PLLKEARALGAKT 135 (155)
T ss_pred CEEEeCcCCCCCCCCCCC--CC--HHHcCCCC--EEEEcCcCCCCC--HHHHHHHHCCCce
Confidence 999986544332 1100 00 12244444 333333333333 7888899988755
No 354
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=83.78 E-value=7.8 Score=33.25 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=24.8
Q ss_pred CCCCeEEEeCCCC-Ch-hhHHHHHhcCCcEEEEEcCC
Q 021691 133 FRSKRVIELGSGY-GL-AGLVIAATTEALEVVISDGN 167 (309)
Q Consensus 133 ~~g~~VLELG~Gt-G~-~~l~la~~~~~~~V~~tD~~ 167 (309)
...++|+=+|||. |. ++..+++ .|-.+++.+|.+
T Consensus 19 L~~~~V~IvG~GglGs~ia~~La~-~Gvg~i~lvD~D 54 (200)
T TIGR02354 19 LEQATVAICGLGGLGSNVAINLAR-AGIGKLILVDFD 54 (200)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHH-cCCCEEEEECCC
Confidence 4567999999984 54 3444444 566789999988
No 355
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=83.69 E-value=5.4 Score=36.82 Aligned_cols=104 Identities=12% Similarity=0.107 Sum_probs=59.1
Q ss_pred CcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-CCC
Q 021691 129 HADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP-YIV 206 (309)
Q Consensus 129 ~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~-~~~ 206 (309)
.....+|.+||=.|+|. |...+.+|+..+..+|++++.+++-.+.+++ . +.. .-+.....+|...-.. ...
T Consensus 167 ~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~-~---ga~---~~i~~~~~~~~~~l~~~~~~ 239 (351)
T cd08233 167 RSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE-L---GAT---IVLDPTEVDVVAEVRKLTGG 239 (351)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-h---CCC---EEECCCccCHHHHHHHHhCC
Confidence 34556788999888763 6777777887776689999988887776643 1 221 0011000111100000 112
Q ss_pred CCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 207 DTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 207 ~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
..+|+|+-+-. ....+....+.|+++| .++.+.
T Consensus 240 ~~~d~vid~~g------~~~~~~~~~~~l~~~G--~~v~~g 272 (351)
T cd08233 240 GGVDVSFDCAG------VQATLDTAIDALRPRG--TAVNVA 272 (351)
T ss_pred CCCCEEEECCC------CHHHHHHHHHhccCCC--EEEEEc
Confidence 34899986311 1235667778888888 454443
No 356
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=83.50 E-value=2.8 Score=39.26 Aligned_cols=47 Identities=23% Similarity=0.285 Sum_probs=38.0
Q ss_pred cCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHH
Q 021691 130 ADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQR 176 (309)
Q Consensus 130 ~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~ 176 (309)
....+|.+||=.|+|. |...+.+|+..++.+|+++|.+++-++.+++
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 3456789999999974 8888888888877789999999887777754
No 357
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=83.49 E-value=2.9 Score=39.43 Aligned_cols=108 Identities=17% Similarity=0.100 Sum_probs=62.5
Q ss_pred CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccC--C-CC--CCceEEEEeeCCCCCC-CC
Q 021691 131 DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSG--A-FG--GTTVKSMTLHWNQDDF-PY 204 (309)
Q Consensus 131 ~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~--~-~~--~~~v~~~~l~w~~~~~-~~ 204 (309)
.+-++....|||+|.|-+-.++|..++..+=+|+++....-+.+..|...+.- . ++ ...+.....+.-.... ..
T Consensus 189 ~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~e 268 (419)
T KOG3924|consen 189 KLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTE 268 (419)
T ss_pred ccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHH
Confidence 45677789999999998877778877777777777655444444444333211 0 11 1223333332221111 12
Q ss_pred CCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691 205 IVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 205 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G 239 (309)
.....++|+++.+.|+++..-.+- .+..-+++|-
T Consensus 269 I~~eatvi~vNN~~Fdp~L~lr~~-eil~~ck~gt 302 (419)
T KOG3924|consen 269 IQTEATVIFVNNVAFDPELKLRSK-EILQKCKDGT 302 (419)
T ss_pred HhhcceEEEEecccCCHHHHHhhH-HHHhhCCCcc
Confidence 345689999999999876654444 4444444443
No 358
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=83.28 E-value=8.7 Score=32.12 Aligned_cols=31 Identities=19% Similarity=0.212 Sum_probs=21.4
Q ss_pred eEEEeCCCC-Ch-hhHHHHHhcCCcEEEEEcCCH
Q 021691 137 RVIELGSGY-GL-AGLVIAATTEALEVVISDGNP 168 (309)
Q Consensus 137 ~VLELG~Gt-G~-~~l~la~~~~~~~V~~tD~~~ 168 (309)
+|+=+|||. |. +...+++ .|..+++.+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~-~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLAR-SGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHH-cCCCeEEEEeCCE
Confidence 478889984 54 3444444 5777899999765
No 359
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=83.19 E-value=6.1 Score=36.36 Aligned_cols=105 Identities=18% Similarity=0.219 Sum_probs=59.6
Q ss_pred hCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeC---CCC-CC
Q 021691 128 SHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHW---NQD-DF 202 (309)
Q Consensus 128 ~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w---~~~-~~ 202 (309)
......+|.+||=.|+|. |...+.+|+..|...|++++.+++-.+.++. . +.. .-+.....++ ... ..
T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~-~---g~~---~vi~~~~~~~~~~~~~~~~ 228 (343)
T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKE-L---GAT---HTVNVRTEDTPESAEKIAE 228 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-c---CCc---EEeccccccchhHHHHHHH
Confidence 344566788999888764 7777778888776559999888876666643 2 221 0001111111 000 00
Q ss_pred CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 203 PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 203 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
......+|+|+-+ .. ....+....+.++++| .++.+.
T Consensus 229 ~~~~~~~d~vld~--~g----~~~~~~~~~~~l~~~G--~~v~~g 265 (343)
T cd05285 229 LLGGKGPDVVIEC--TG----AESCIQTAIYATRPGG--TVVLVG 265 (343)
T ss_pred HhCCCCCCEEEEC--CC----CHHHHHHHHHHhhcCC--EEEEEc
Confidence 0112458999863 11 1235677788888888 455443
No 360
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=82.99 E-value=21 Score=30.67 Aligned_cols=81 Identities=16% Similarity=0.156 Sum_probs=48.1
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-------
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP------- 203 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~------- 203 (309)
..+++||=.|+ +|.+|..+++.+ .+.+|++++.++..+..+...+...+ .++.....|+.+...-
T Consensus 4 ~~~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~ 77 (251)
T PRK12826 4 LEGRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG-----GKARARQVDVRDRAALKAAVAAG 77 (251)
T ss_pred CCCCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-----CeEEEEECCCCCHHHHHHHHHHH
Confidence 35788997776 455666555432 24689999998776665555554332 2355666666543210
Q ss_pred -CCCCCccEEEEcCCCC
Q 021691 204 -YIVDTFDVIVASDCTF 219 (309)
Q Consensus 204 -~~~~~fDvIi~~d~ly 219 (309)
...+++|+|+.+-..+
T Consensus 78 ~~~~~~~d~vi~~ag~~ 94 (251)
T PRK12826 78 VEDFGRLDILVANAGIF 94 (251)
T ss_pred HHHhCCCCEEEECCCCC
Confidence 0113689988865443
No 361
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=82.39 E-value=4.6 Score=36.69 Aligned_cols=100 Identities=13% Similarity=0.087 Sum_probs=58.0
Q ss_pred cCcCCCCeEEEeCC-C-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCC
Q 021691 130 ADMFRSKRVIELGS-G-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVD 207 (309)
Q Consensus 130 ~~~~~g~~VLELG~-G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~ 207 (309)
....+|.+||=.|+ | .|...+.+|+..|. +|++++.+++-.+.+++ .+.. .-+....-+|..........
T Consensus 139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~----~Ga~---~vi~~~~~~~~~~v~~~~~~ 210 (329)
T cd08294 139 CKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKE----LGFD---AVFNYKTVSLEEALKEAAPD 210 (329)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC---EEEeCCCccHHHHHHHHCCC
Confidence 44567899998884 3 47777888888765 79999988877776654 2221 00110001111000001124
Q ss_pred CccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691 208 TFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFF 246 (309)
Q Consensus 208 ~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~ 246 (309)
.+|+|+- ++- ...+....++++++| .++.+
T Consensus 211 gvd~vld--~~g-----~~~~~~~~~~l~~~G--~iv~~ 240 (329)
T cd08294 211 GIDCYFD--NVG-----GEFSSTVLSHMNDFG--RVAVC 240 (329)
T ss_pred CcEEEEE--CCC-----HHHHHHHHHhhccCC--EEEEE
Confidence 5898885 322 245677788899999 45444
No 362
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=82.23 E-value=6 Score=30.84 Aligned_cols=80 Identities=18% Similarity=0.220 Sum_probs=45.9
Q ss_pred CeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEE
Q 021691 136 KRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVA 214 (309)
Q Consensus 136 ~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~ 214 (309)
++|.|+|.|- =.++-.|+++ +..|+++|+++. ++. .++ ++..-|..++. .-+--+
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~-------~a~-~g~-------~~v~DDitnP~-------~~iY~~ 70 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK-------TAP-EGL-------RFVVDDITNPN-------ISIYEG 70 (129)
T ss_pred CcEEEEccchHHHHHHHHHHc--CCcEEEEecccc-------cCc-ccc-------eEEEccCCCcc-------HHHhhC
Confidence 3899999985 3556666665 478999999875 111 122 22222222221 122223
Q ss_pred cCCCCCcccHHHHHHHHHHHHhcCC
Q 021691 215 SDCTFFKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 215 ~d~ly~~~~~~~ll~~l~~lLk~~G 239 (309)
++.+|.....+.+.+.+.++-+.-|
T Consensus 71 A~lIYSiRpppEl~~~ildva~aVg 95 (129)
T COG1255 71 ADLIYSIRPPPELQSAILDVAKAVG 95 (129)
T ss_pred ccceeecCCCHHHHHHHHHHHHhhC
Confidence 3444555556777777777776655
No 363
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=82.21 E-value=19 Score=32.13 Aligned_cols=123 Identities=11% Similarity=0.002 Sum_probs=68.0
Q ss_pred HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhc----CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEe
Q 021691 120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATT----EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTL 195 (309)
Q Consensus 120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~----~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l 195 (309)
.+|..+.........+...+|||+|+.-=+..+...+ ...+++.+|++...+....+.+...-.. -.|.....
T Consensus 64 aIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~---l~v~~l~~ 140 (321)
T COG4301 64 AILQARAAEIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPG---LEVNALCG 140 (321)
T ss_pred HHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCC---CeEeehhh
Confidence 3444344333445567899999999874443333322 2368999999999988665555443221 13333333
Q ss_pred eCCCCCCCCCCC-CccEEEEcCCC--CCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 196 HWNQDDFPYIVD-TFDVIVASDCT--FFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 196 ~w~~~~~~~~~~-~fDvIi~~d~l--y~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
+........+.. .==.++....+ +.++.-..++..++..++||. .+++-.
T Consensus 141 ~~~~~La~~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd--~~LlGv 193 (321)
T COG4301 141 DYELALAELPRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGD--YFLLGV 193 (321)
T ss_pred hHHHHHhcccCCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcc--eEEEec
Confidence 333221111111 11112222233 336667788999999999987 555543
No 364
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=82.02 E-value=3.6 Score=38.28 Aligned_cols=103 Identities=16% Similarity=0.091 Sum_probs=61.0
Q ss_pred cCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-CCCC
Q 021691 130 ADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP-YIVD 207 (309)
Q Consensus 130 ~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~-~~~~ 207 (309)
....+|.+||=.|+|. |...+.+|+..+..+|+++|.+++-++.+++ .+.. .-+....-+|...-.. ....
T Consensus 172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~---~~i~~~~~~~~~~i~~~~~~~ 244 (358)
T TIGR03451 172 GGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGAT---HTVNSSGTDPVEAIRALTGGF 244 (358)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc---eEEcCCCcCHHHHHHHHhCCC
Confidence 3456789999999874 7788888888877679999999887777753 2221 0011111111000000 1123
Q ss_pred CccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 208 TFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 208 ~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
.+|+|+- +.-. +..+....++++++| .++++.
T Consensus 245 g~d~vid--~~g~----~~~~~~~~~~~~~~G--~iv~~G 276 (358)
T TIGR03451 245 GADVVID--AVGR----PETYKQAFYARDLAG--TVVLVG 276 (358)
T ss_pred CCCEEEE--CCCC----HHHHHHHHHHhccCC--EEEEEC
Confidence 5898874 3332 234566677889999 555544
No 365
>PRK11524 putative methyltransferase; Provisional
Probab=81.88 E-value=5.2 Score=36.26 Aligned_cols=57 Identities=16% Similarity=0.263 Sum_probs=35.1
Q ss_pred CCCccEEEEcCCCCCc-----------------ccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeE
Q 021691 206 VDTFDVIVASDCTFFK-----------------EFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHF 268 (309)
Q Consensus 206 ~~~fDvIi~~d~ly~~-----------------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~ 268 (309)
+++||+|++ |+.|.. .....++..+.++|+++| .++++..... .. +...+.+.||.+
T Consensus 25 ~~siDlIit-DPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G--~i~i~~~~~~--~~-~~~~~~~~~f~~ 98 (284)
T PRK11524 25 SESVDLIFA-DPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQG--TMYIMNSTEN--MP-FIDLYCRKLFTI 98 (284)
T ss_pred cCcccEEEE-CCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCc--EEEEEcCchh--hh-HHHHHHhcCcce
Confidence 467999999 554532 113568899999999999 5555433221 12 344455567654
No 366
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=81.80 E-value=28 Score=33.45 Aligned_cols=111 Identities=21% Similarity=0.207 Sum_probs=60.7
Q ss_pred CeEEEeCCCC-Chh-hHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCC-------------CCceEEEEeeCCCC
Q 021691 136 KRVIELGSGY-GLA-GLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFG-------------GTTVKSMTLHWNQD 200 (309)
Q Consensus 136 ~~VLELG~Gt-G~~-~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~-------------~~~v~~~~l~w~~~ 200 (309)
++|.=+|.|. |.. +..+++. +.+|++.|.+++.++.++.. ..... .+...+. .
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~--G~~V~~~D~~~~~v~~l~~g----~~~~~e~~l~~~l~~~~~~g~l~~~-----~- 71 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRG----EIHIVEPDLDMVVKTAVEGGYLRAT-----T- 71 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhC--CCEEEEEeCCHHHHHHHHCC----CCCcCCCCHHHHHHHHhhcCceeee-----c-
Confidence 4676777774 322 2223332 57999999999888764321 11000 0111111 0
Q ss_pred CCCCCCCCccEEEEcCCCC-------CcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhC
Q 021691 201 DFPYIVDTFDVIVASDCTF-------FKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGN 264 (309)
Q Consensus 201 ~~~~~~~~fDvIi~~d~ly-------~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~ 264 (309)
.....|+|+.+-+.- +.......++.+...++++. .++..++..+.+.+++...+.+.
T Consensus 72 ----~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~--iVI~~STv~pgtt~~~~~~l~~~ 136 (415)
T PRK11064 72 ----TPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGD--LVILESTSPVGATEQMAEWLAEA 136 (415)
T ss_pred ----ccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCC--EEEEeCCCCCCHHHHHHHHHHHh
Confidence 012468887644331 22345555666777776655 56666666777777777666654
No 367
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=81.42 E-value=12 Score=33.95 Aligned_cols=131 Identities=15% Similarity=0.134 Sum_probs=70.9
Q ss_pred cCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691 132 MFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD 210 (309)
Q Consensus 132 ~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD 210 (309)
..+|++||=+|+|- +..-+...+..+..+++.+..+.+-.+.+.+.+...+. .+..... . +.... ..+|
T Consensus 123 ~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~-----~~~~~~~--~--~~~~~-~~~d 192 (283)
T COG0169 123 DVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGA-----AVEAAAL--A--DLEGL-EEAD 192 (283)
T ss_pred ccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccc-----ccccccc--c--ccccc-cccC
Confidence 44689999999985 33323323345668999999987666666555443321 1111111 0 00111 1589
Q ss_pred EEEEcCCCCCccc-HHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEeccCchhhh
Q 021691 211 VIVASDCTFFKEF-HKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYNAEIWK 280 (309)
Q Consensus 211 vIi~~d~ly~~~~-~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~~~~~~~~ 280 (309)
+||-+-++-.... -+.++. ..+|+++. ++++.......-.|++.+++.|-.+ +.-...-+++
T Consensus 193 liINaTp~Gm~~~~~~~~~~--~~~l~~~~----~v~D~vY~P~~TplL~~A~~~G~~~--idGl~Mlv~Q 255 (283)
T COG0169 193 LLINATPVGMAGPEGDSPVP--AELLPKGA----IVYDVVYNPLETPLLREARAQGAKT--IDGLGMLVHQ 255 (283)
T ss_pred EEEECCCCCCCCCCCCCCCc--HHhcCcCC----EEEEeccCCCCCHHHHHHHHcCCeE--ECcHHHHHHH
Confidence 9999776655443 122333 55565544 3333222212347999999998773 4333333443
No 368
>PLN02827 Alcohol dehydrogenase-like
Probab=80.84 E-value=4.1 Score=38.41 Aligned_cols=46 Identities=26% Similarity=0.295 Sum_probs=36.6
Q ss_pred cCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHH
Q 021691 130 ADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQ 175 (309)
Q Consensus 130 ~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~ 175 (309)
....+|.+||=.|+|. |...+.+|+..+...|+++|.+++-.+.++
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~ 235 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAK 235 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH
Confidence 3456799999999875 888888888887778999998887666664
No 369
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=80.83 E-value=17 Score=34.66 Aligned_cols=125 Identities=22% Similarity=0.244 Sum_probs=64.6
Q ss_pred CeEEEeCCCC-ChhhHH-HHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCC-CCCC-----ceEEEEeeCCCCCCCCCCC
Q 021691 136 KRVIELGSGY-GLAGLV-IAATTEALEVVISDGNPQVVDYIQRNVDANSGA-FGGT-----TVKSMTLHWNQDDFPYIVD 207 (309)
Q Consensus 136 ~~VLELG~Gt-G~~~l~-la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~-~~~~-----~v~~~~l~w~~~~~~~~~~ 207 (309)
.+|-=+|=|. |+..-. +|+ .+.+|+|+|+++..++.+..- .+.+. .... .+....+....+ +....
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~--~G~~ViG~DIn~~~Vd~ln~G--~~~i~e~~~~~~v~~~v~~g~lraTtd--~~~l~ 83 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFAS--AGFKVIGVDINQKKVDKLNRG--ESYIEEPDLDEVVKEAVESGKLRATTD--PEELK 83 (436)
T ss_pred eEEEEEccccccHHHHHHHHH--cCCceEeEeCCHHHHHHHhCC--cceeecCcHHHHHHHHHhcCCceEecC--hhhcc
Confidence 4566666663 655332 233 257999999999888876421 01000 0000 000001111101 11112
Q ss_pred CccEEEEc-CCCCC------cccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHh--CCCeE
Q 021691 208 TFDVIVAS-DCTFF------KEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEG--NHLHF 268 (309)
Q Consensus 208 ~fDvIi~~-d~ly~------~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~--~G~~~ 268 (309)
..|+++.+ ..... .+......+++...|++|- .+++-++..+.+.+++..-+.+ .|+.+
T Consensus 84 ~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~--LVIlEST~~PGTTe~v~~plle~~sgL~~ 151 (436)
T COG0677 84 ECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGD--LVILESTTPPGTTEEVVKPLLEERSGLKF 151 (436)
T ss_pred cCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCC--EEEEecCCCCCcHHHHHHHHHhhcCCCcc
Confidence 45665443 33222 2335667788889999887 6666666666676776665544 45555
No 370
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=80.56 E-value=5 Score=39.44 Aligned_cols=97 Identities=19% Similarity=0.195 Sum_probs=62.9
Q ss_pred eEEEeCCCCChhhHH---HHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691 137 RVIELGSGYGLAGLV---IAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI 212 (309)
Q Consensus 137 ~VLELG~GtG~~~l~---la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI 212 (309)
.|+=+|+|-|-+.-. .|+... .-++++++-+|.++-.++. ....+. ..+|+...-|......+ ..+.|++
T Consensus 370 VimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W---~~~Vtii~~DMR~w~ap--~eq~DI~ 443 (649)
T KOG0822|consen 370 VIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECW---DNRVTIISSDMRKWNAP--REQADII 443 (649)
T ss_pred EEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhh---cCeeEEEeccccccCCc--hhhccch
Confidence 577889999965433 333322 2378999999999887764 222222 24566555544433322 3678998
Q ss_pred EEc--CCCCCcccHHHHHHHHHHHHhcCC
Q 021691 213 VAS--DCTFFKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 213 i~~--d~ly~~~~~~~ll~~l~~lLk~~G 239 (309)
++- ..+-+.+.-+..+.-+.++||++|
T Consensus 444 VSELLGSFGDNELSPECLDG~q~fLkpdg 472 (649)
T KOG0822|consen 444 VSELLGSFGDNELSPECLDGAQKFLKPDG 472 (649)
T ss_pred HHHhhccccCccCCHHHHHHHHhhcCCCc
Confidence 872 234445667888999999999998
No 371
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=80.45 E-value=4.6 Score=37.69 Aligned_cols=35 Identities=26% Similarity=0.387 Sum_probs=25.0
Q ss_pred CCCCeEEEeCCCC-Chh-hHHHHHhcCCcEEEEEcCCH
Q 021691 133 FRSKRVIELGSGY-GLA-GLVIAATTEALEVVISDGNP 168 (309)
Q Consensus 133 ~~g~~VLELG~Gt-G~~-~l~la~~~~~~~V~~tD~~~ 168 (309)
..+++||=+|||. |.. +..|++ .|..+++.+|.+.
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~-aGvg~i~lvD~D~ 58 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVR-AGIGKLTIADRDY 58 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCc
Confidence 4568999999984 533 344444 5677999999874
No 372
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=80.34 E-value=5.7 Score=37.06 Aligned_cols=103 Identities=12% Similarity=0.029 Sum_probs=58.5
Q ss_pred cCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEe--eCCCCCCCCCC
Q 021691 130 ADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTL--HWNQDDFPYIV 206 (309)
Q Consensus 130 ~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l--~w~~~~~~~~~ 206 (309)
....+|.+||=.|+|. |...+.+|+..+...|++++.+++-.+.+++ +..... +..... ++.........
T Consensus 179 ~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~-~g~~~~------v~~~~~~~~~~~~l~~~~~ 251 (365)
T cd05279 179 AKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ-LGATEC------INPRDQDKPIVEVLTEMTD 251 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-hCCCee------cccccccchHHHHHHHHhC
Confidence 4556788999888874 7777777888877679999988877666643 211111 111111 00000000012
Q ss_pred CCccEEEEcCCCCCcccHHHHHHHHHHHHh-cCCCeEEEEEe
Q 021691 207 DTFDVIVASDCTFFKEFHKDLARIIKFLLK-KVGPSEALFFS 247 (309)
Q Consensus 207 ~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk-~~G~~~~ii~~ 247 (309)
+.+|+|+-+ .-. ...+....+.++ ++| .++.+.
T Consensus 252 ~~~d~vid~--~g~----~~~~~~~~~~l~~~~G--~~v~~g 285 (365)
T cd05279 252 GGVDYAFEV--IGS----ADTLKQALDATRLGGG--TSVVVG 285 (365)
T ss_pred CCCcEEEEC--CCC----HHHHHHHHHHhccCCC--EEEEEe
Confidence 458999863 211 345666777788 888 454443
No 373
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=79.85 E-value=13 Score=32.28 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=24.8
Q ss_pred CCCCeEEEeCCCC-Ch-hhHHHHHhcCCcEEEEEcCC
Q 021691 133 FRSKRVIELGSGY-GL-AGLVIAATTEALEVVISDGN 167 (309)
Q Consensus 133 ~~g~~VLELG~Gt-G~-~~l~la~~~~~~~V~~tD~~ 167 (309)
.+..+|+=+|||. |. +...|++ .|..+++.+|.+
T Consensus 26 L~~~~V~ViG~GglGs~ia~~La~-~Gvg~i~lvD~D 61 (212)
T PRK08644 26 LKKAKVGIAGAGGLGSNIAVALAR-SGVGNLKLVDFD 61 (212)
T ss_pred HhCCCEEEECcCHHHHHHHHHHHH-cCCCeEEEEeCC
Confidence 4677999999984 54 3444444 577899999987
No 374
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=79.70 E-value=14 Score=33.51 Aligned_cols=123 Identities=11% Similarity=0.013 Sum_probs=62.7
Q ss_pred CCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691 133 FRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV 211 (309)
Q Consensus 133 ~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv 211 (309)
..+++||=||||- |....+.....+..+++.++.+++-.+.+...+... . ....+. ..++... ......+|+
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~-~--~~~~~~--~~~~~~~--~~~~~~~di 197 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNA-V--GREAVV--GVDARGI--EDVIAAADG 197 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhc-c--CcceEE--ecCHhHH--HHHHhhcCE
Confidence 4688999999984 433333233467789999999875544443332211 1 001111 1222110 111246899
Q ss_pred EEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeE
Q 021691 212 IVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHF 268 (309)
Q Consensus 212 Ii~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~ 268 (309)
||-+-++-.....+..+.. ..+.++. ++++.......-.|++.+++.|.++
T Consensus 198 vINaTp~Gm~~~~~~~~~~--~~l~~~~----~v~D~vY~P~~T~ll~~A~~~G~~~ 248 (283)
T PRK14027 198 VVNATPMGMPAHPGTAFDV--SCLTKDH----WVGDVVYMPIETELLKAARALGCET 248 (283)
T ss_pred EEEcCCCCCCCCCCCCCCH--HHcCCCc----EEEEcccCCCCCHHHHHHHHCCCEE
Confidence 9987665432211101111 2344332 3333322223347999999999865
No 375
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=79.56 E-value=40 Score=32.09 Aligned_cols=118 Identities=14% Similarity=0.092 Sum_probs=61.5
Q ss_pred EEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhc---cCC----CCCCceEEEEeeCCCCCCCCCCCCc
Q 021691 138 VIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDAN---SGA----FGGTTVKSMTLHWNQDDFPYIVDTF 209 (309)
Q Consensus 138 VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n---~~~----~~~~~v~~~~l~w~~~~~~~~~~~f 209 (309)
|-=+|.|. |+..-.+.+. +.+|+++|.+++.++.+++..... ++. ....++.. .... .......
T Consensus 3 I~VIGlGyvGl~~A~~lA~--G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~-----t~~~-~~~~~~a 74 (388)
T PRK15057 3 ITISGTGYVGLSNGLLIAQ--NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNA-----TLDK-NEAYRDA 74 (388)
T ss_pred EEEECCCHHHHHHHHHHHh--CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEE-----ecch-hhhhcCC
Confidence 44467773 5443333232 478999999999988887532110 000 00011111 0000 0111346
Q ss_pred cEEEEcCCCC--------CcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCC
Q 021691 210 DVIVASDCTF--------FKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHL 266 (309)
Q Consensus 210 DvIi~~d~ly--------~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~ 266 (309)
|+|+.+=+.- +.......++.+.+ ++++. .++..++..+.+.+++.+.+.+.|+
T Consensus 75 d~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~--lVV~~STv~pgtt~~l~~~~~~~~v 136 (388)
T PRK15057 75 DYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYA--VMVIKSTVPVGFTAAMHKKYRTENI 136 (388)
T ss_pred CEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCC--EEEEeeecCCchHHHHHHHhhcCcE
Confidence 7776643221 22344556666666 45544 6666777777888888777766543
No 376
>PRK07102 short chain dehydrogenase; Provisional
Probab=79.52 E-value=30 Score=29.79 Aligned_cols=76 Identities=9% Similarity=0.134 Sum_probs=42.6
Q ss_pred CeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-----CCCCC
Q 021691 136 KRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP-----YIVDT 208 (309)
Q Consensus 136 ~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~-----~~~~~ 208 (309)
++|+=.|+ +|.+|..+++.+ .+.+|+++|.+++-.+.+.+.+..... .++.+...|..+...- .....
T Consensus 2 ~~vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~~ 76 (243)
T PRK07102 2 KKILIIGA-TSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGA----VAVSTHELDILDTASHAAFLDSLPAL 76 (243)
T ss_pred cEEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcC----CeEEEEecCCCChHHHHHHHHHHhhc
Confidence 57887775 455555555443 246899999988766655444443321 2455555555433210 11235
Q ss_pred ccEEEEcC
Q 021691 209 FDVIVASD 216 (309)
Q Consensus 209 fDvIi~~d 216 (309)
+|+++.+-
T Consensus 77 ~d~vv~~a 84 (243)
T PRK07102 77 PDIVLIAV 84 (243)
T ss_pred CCEEEECC
Confidence 79988753
No 377
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=79.51 E-value=5.5 Score=38.27 Aligned_cols=89 Identities=18% Similarity=0.130 Sum_probs=56.4
Q ss_pred cCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691 132 MFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD 210 (309)
Q Consensus 132 ~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD 210 (309)
...|++|+=+|+|. |......++..|+ +|+++|.++.-++.++. .|.. +... . + ....+|
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~----~G~~-------~~~~--~-e----~v~~aD 259 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM----EGYE-------VMTM--E-E----AVKEGD 259 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh----cCCE-------EccH--H-H----HHcCCC
Confidence 46899999999995 8777777777766 89999999876665543 2321 1111 0 1 113579
Q ss_pred EEEEcCCCCCcccHHHHHH-HHHHHHhcCCCeEEEEEe
Q 021691 211 VIVASDCTFFKEFHKDLAR-IIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 211 vIi~~d~ly~~~~~~~ll~-~l~~lLk~~G~~~~ii~~ 247 (309)
+|+.+- .. ...+. .....++++| .++.+.
T Consensus 260 VVI~at-----G~-~~~i~~~~l~~mk~Gg--ilvnvG 289 (413)
T cd00401 260 IFVTTT-----GN-KDIITGEHFEQMKDGA--IVCNIG 289 (413)
T ss_pred EEEECC-----CC-HHHHHHHHHhcCCCCc--EEEEeC
Confidence 998742 22 33444 4477888888 444444
No 378
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=79.49 E-value=12 Score=32.93 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=27.9
Q ss_pred CCCCeEEEeCCC-CChhhHHHHHhcCCcEEEEEcCCHHHHHHH
Q 021691 133 FRSKRVIELGSG-YGLAGLVIAATTEALEVVISDGNPQVVDYI 174 (309)
Q Consensus 133 ~~g~~VLELG~G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~ 174 (309)
..+.+|+=+||| .|........+.|..+++.+|.+.--..++
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNl 51 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNL 51 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhh
Confidence 356799999998 465444333446788999999765333333
No 379
>PRK08703 short chain dehydrogenase; Provisional
Probab=79.47 E-value=36 Score=29.22 Aligned_cols=47 Identities=11% Similarity=0.170 Sum_probs=32.0
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHh
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDA 180 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~ 180 (309)
.++++||=.|+ +|.+|..+++.+ .+.+|++++.+++.++.+...+..
T Consensus 4 l~~k~vlItG~-sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~ 52 (239)
T PRK08703 4 LSDKTILVTGA-SQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVE 52 (239)
T ss_pred CCCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHH
Confidence 46789999996 455555555433 256899999998777666555543
No 380
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=79.22 E-value=10 Score=34.83 Aligned_cols=101 Identities=13% Similarity=0.086 Sum_probs=58.0
Q ss_pred cCcCCCCeEEEeCC-C-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE-eeCCCCCCCCCC
Q 021691 130 ADMFRSKRVIELGS-G-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT-LHWNQDDFPYIV 206 (309)
Q Consensus 130 ~~~~~g~~VLELG~-G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~-l~w~~~~~~~~~ 206 (309)
....+|.+||=.|+ | .|...+.+|+..|. +|++++.+++-.+.++..+ +.. .-+.... -++.........
T Consensus 147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~l---Ga~---~vi~~~~~~~~~~~i~~~~~ 219 (338)
T cd08295 147 CKPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNKL---GFD---DAFNYKEEPDLDAALKRYFP 219 (338)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhc---CCc---eeEEcCCcccHHHHHHHhCC
Confidence 45668899999887 4 47777778887765 7999998887766665422 221 0011000 011000000112
Q ss_pred CCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691 207 DTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFF 246 (309)
Q Consensus 207 ~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~ 246 (309)
..+|+|+-. +- ...+....+.|+++| .++.+
T Consensus 220 ~gvd~v~d~--~g-----~~~~~~~~~~l~~~G--~iv~~ 250 (338)
T cd08295 220 NGIDIYFDN--VG-----GKMLDAVLLNMNLHG--RIAAC 250 (338)
T ss_pred CCcEEEEEC--CC-----HHHHHHHHHHhccCc--EEEEe
Confidence 468988753 22 245667788889998 45544
No 381
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=79.10 E-value=9.7 Score=34.68 Aligned_cols=102 Identities=16% Similarity=0.118 Sum_probs=58.5
Q ss_pred CcCcCCCCeEEEeCC-C-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEe-eCCCCCCCCC
Q 021691 129 HADMFRSKRVIELGS-G-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTL-HWNQDDFPYI 205 (309)
Q Consensus 129 ~~~~~~g~~VLELG~-G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l-~w~~~~~~~~ 205 (309)
.....+|.+||=.|+ | .|...+.+|+..|. +|++++.+++-.+.++. .+.. .-+....- +|........
T Consensus 133 ~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~~~ 204 (325)
T TIGR02825 133 ICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKK----LGFD---VAFNYKTVKSLEETLKKAS 204 (325)
T ss_pred HhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC---EEEeccccccHHHHHHHhC
Confidence 345667899998885 4 58888888887665 89999988877666643 2321 00110000 1110000011
Q ss_pred CCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 206 VDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 206 ~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
...+|+|+- ++- ...+....++++++| .++.+.
T Consensus 205 ~~gvdvv~d--~~G-----~~~~~~~~~~l~~~G--~iv~~G 237 (325)
T TIGR02825 205 PDGYDCYFD--NVG-----GEFSNTVIGQMKKFG--RIAICG 237 (325)
T ss_pred CCCeEEEEE--CCC-----HHHHHHHHHHhCcCc--EEEEec
Confidence 235898875 322 123577788899999 555443
No 382
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=78.27 E-value=14 Score=33.73 Aligned_cols=39 Identities=23% Similarity=0.143 Sum_probs=28.4
Q ss_pred CeEEEeCCCC--ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHH
Q 021691 136 KRVIELGSGY--GLAGLVIAATTEALEVVISDGNPQVVDYIQR 176 (309)
Q Consensus 136 ~~VLELG~Gt--G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~ 176 (309)
++|+=+|+|. |+++..|++. +..|++++..++-++.+++
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~--G~~V~lv~r~~~~~~~i~~ 43 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA--GLPVRLILRDRQRLAAYQQ 43 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC--CCCeEEEEechHHHHHHhh
Confidence 4788899995 4667777664 4689999988766665654
No 383
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.10 E-value=39 Score=28.83 Aligned_cols=78 Identities=14% Similarity=0.215 Sum_probs=45.0
Q ss_pred CCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC--------
Q 021691 134 RSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP-------- 203 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~-------- 203 (309)
++++||=.|++ |.+|..+++.+ .+.+|++++.+++-++.+.+.+... ..+.....|+.+...-
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~~~~ 76 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY------GNIHYVVGDVSSTESARNVIEKAA 76 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEECCCCCHHHHHHHHHHHH
Confidence 57899999986 44444444433 2568999999887766554444322 1345555666543210
Q ss_pred CCCCCccEEEEcCCC
Q 021691 204 YIVDTFDVIVASDCT 218 (309)
Q Consensus 204 ~~~~~fDvIi~~d~l 218 (309)
..-+..|.++.+...
T Consensus 77 ~~~~~id~ii~~ag~ 91 (238)
T PRK05786 77 KVLNAIDGLVVTVGG 91 (238)
T ss_pred HHhCCCCEEEEcCCC
Confidence 011356877765543
No 384
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=77.85 E-value=8 Score=36.73 Aligned_cols=59 Identities=17% Similarity=0.155 Sum_probs=43.0
Q ss_pred ecccHHHHHHHHhhCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHh
Q 021691 115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDA 180 (309)
Q Consensus 115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~ 180 (309)
+|+-..+.-+.+ ++.++.+||=|.+|. -.+.. +++ ++++|++||.||.-+..++-++..
T Consensus 20 ~WEDp~vD~~aL----~i~~~d~vl~ItSaG~N~L~y-L~~--~P~~I~aVDlNp~Q~aLleLKlAa 79 (380)
T PF11899_consen 20 CWEDPRVDMEAL----NIGPDDRVLTITSAGCNALDY-LLA--GPKRIHAVDLNPAQNALLELKLAA 79 (380)
T ss_pred ccCCcHHHHHHh----CCCCCCeEEEEccCCchHHHH-Hhc--CCceEEEEeCCHHHHHHHHHHHHH
Confidence 799888887766 445688999997754 44444 333 478999999999888877665543
No 385
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=77.67 E-value=46 Score=28.97 Aligned_cols=79 Identities=15% Similarity=0.137 Sum_probs=48.1
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-------
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP------- 203 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~------- 203 (309)
..+++||=.|+ +|.+|..+++.+ .+.+|++++.+++-++.+.+.+...+ .++.....|..+...-
T Consensus 10 ~~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~-----~~~~~~~~Dl~d~~~i~~~~~~~ 83 (259)
T PRK08213 10 LSGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG-----IDALWIAADVADEADIERLAEET 83 (259)
T ss_pred cCCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-----CeEEEEEccCCCHHHHHHHHHHH
Confidence 46789999985 566666666543 24589999998877766665554432 2344555555433211
Q ss_pred -CCCCCccEEEEcCC
Q 021691 204 -YIVDTFDVIVASDC 217 (309)
Q Consensus 204 -~~~~~fDvIi~~d~ 217 (309)
...+.+|.|+.+..
T Consensus 84 ~~~~~~id~vi~~ag 98 (259)
T PRK08213 84 LERFGHVDILVNNAG 98 (259)
T ss_pred HHHhCCCCEEEECCC
Confidence 01246899888654
No 386
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=77.23 E-value=9.9 Score=34.23 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=46.8
Q ss_pred HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhcc
Q 021691 120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANS 182 (309)
Q Consensus 120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~ 182 (309)
..|...+... ....|..|||--+|+|..++++ ... +..+++.|++++-++.+.+.+....
T Consensus 209 ~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa-~~~-~r~~ig~e~~~~y~~~~~~r~~~~~ 268 (302)
T COG0863 209 LALIERLIRD-YSFPGDIVLDPFAGSGTTGIAA-KNL-GRRFIGIEINPEYVEVALKRLQEGL 268 (302)
T ss_pred HHHHHHHHHh-cCCCCCEEeecCCCCChHHHHH-HHc-CCceEEEecCHHHHHHHHHHHHhhc
Confidence 3444444444 5678899999999999999874 443 5789999999999999998887654
No 387
>PRK08328 hypothetical protein; Provisional
Probab=77.23 E-value=6.3 Score=34.61 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=25.5
Q ss_pred CCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCH
Q 021691 133 FRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNP 168 (309)
Q Consensus 133 ~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~ 168 (309)
..+.+|+=+|||. |..........|.++++.+|.+.
T Consensus 25 L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 3567999999984 64444334446788999999654
No 388
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=76.88 E-value=6.2 Score=36.86 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=24.8
Q ss_pred CCCCeEEEeCCCC-Ch-hhHHHHHhcCCcEEEEEcCCH
Q 021691 133 FRSKRVIELGSGY-GL-AGLVIAATTEALEVVISDGNP 168 (309)
Q Consensus 133 ~~g~~VLELG~Gt-G~-~~l~la~~~~~~~V~~tD~~~ 168 (309)
...++||=+|||. |. +...|++ .|-.+++.+|.+.
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~-aGvg~i~lvD~D~ 58 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVR-AGVGKVTIVDRDY 58 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHH-cCCCeEEEEeCCc
Confidence 3567999999984 53 3444444 4777999999863
No 389
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=76.86 E-value=6 Score=36.94 Aligned_cols=47 Identities=26% Similarity=0.239 Sum_probs=37.0
Q ss_pred cCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHH
Q 021691 130 ADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQR 176 (309)
Q Consensus 130 ~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~ 176 (309)
....+|.+||=.|+|. |...+.+|+..+..+|+++|.+++-++.+++
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~ 230 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK 230 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 3456789999999874 7777778888776689999999887777643
No 390
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=76.59 E-value=38 Score=29.22 Aligned_cols=77 Identities=17% Similarity=0.176 Sum_probs=45.2
Q ss_pred CCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC--------CC
Q 021691 135 SKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF--------PY 204 (309)
Q Consensus 135 g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~--------~~ 204 (309)
+++||=.|+ +|.+|..+++.+ .+.+|++++.+++-.+.+...+...+ .++.....|+.+... ..
T Consensus 1 ~~~vlItGa-~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (255)
T TIGR01963 1 GKTALVTGA-ASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAG-----GSVIYLVADVTKEDEIADMIAAAAA 74 (255)
T ss_pred CCEEEEcCC-cchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-----CceEEEECCCCCHHHHHHHHHHHHH
Confidence 356777774 566666666543 24589999998876666655443322 245666666654320 01
Q ss_pred CCCCccEEEEcCC
Q 021691 205 IVDTFDVIVASDC 217 (309)
Q Consensus 205 ~~~~fDvIi~~d~ 217 (309)
.....|+|+.+..
T Consensus 75 ~~~~~d~vi~~a~ 87 (255)
T TIGR01963 75 EFGGLDILVNNAG 87 (255)
T ss_pred hcCCCCEEEECCC
Confidence 1245798887553
No 391
>PRK08223 hypothetical protein; Validated
Probab=76.54 E-value=2.4 Score=38.63 Aligned_cols=45 Identities=24% Similarity=0.192 Sum_probs=30.7
Q ss_pred CCCCeEEEeCCCC-Chh-hHHHHHhcCCcEEEEEcCCHHHHHHHHHHH
Q 021691 133 FRSKRVIELGSGY-GLA-GLVIAATTEALEVVISDGNPQVVDYIQRNV 178 (309)
Q Consensus 133 ~~g~~VLELG~Gt-G~~-~l~la~~~~~~~V~~tD~~~~~l~~~~~n~ 178 (309)
.++.+||=+|||- |.. ...||+ .|..+++.+|.+.--+.++.+++
T Consensus 25 L~~s~VlIvG~GGLGs~va~~LA~-aGVG~i~lvD~D~Ve~SNLnRQ~ 71 (287)
T PRK08223 25 LRNSRVAIAGLGGVGGIHLLTLAR-LGIGKFTIADFDVFELRNFNRQA 71 (287)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHH-hCCCeEEEEeCCCcchhcccccc
Confidence 3567999999984 654 444444 57889999998765555554443
No 392
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=76.23 E-value=6.7 Score=36.67 Aligned_cols=46 Identities=26% Similarity=0.258 Sum_probs=36.4
Q ss_pred cCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHH
Q 021691 130 ADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQ 175 (309)
Q Consensus 130 ~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~ 175 (309)
....+|.+||=+|+|. |...+.+|+..+..+|+++|.+++-++.++
T Consensus 182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~ 228 (368)
T cd08300 182 AKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAK 228 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 3456789999999874 777777888877668999999988777664
No 393
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=75.59 E-value=3 Score=32.39 Aligned_cols=85 Identities=18% Similarity=0.242 Sum_probs=56.2
Q ss_pred CCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC------CCCCCccEEEEcCC
Q 021691 144 GYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP------YIVDTFDVIVASDC 217 (309)
Q Consensus 144 GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~------~~~~~fDvIi~~d~ 217 (309)
|.|+.++.+|+..| .+|+++|.++.-++.+++ .+.. ..++..+.+.. .....+|+|+-.-.
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~----~Ga~--------~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKE----LGAD--------HVIDYSDDDFVEQIRELTGGRGVDVVIDCVG 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHH----TTES--------EEEETTTSSHHHHHHHHTTTSSEEEEEESSS
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHh----hccc--------ccccccccccccccccccccccceEEEEecC
Confidence 56888999999888 899999999988877764 2321 11233222110 11247999986411
Q ss_pred CCCcccHHHHHHHHHHHHhcCCCeEEEEEeec
Q 021691 218 TFFKEFHKDLARIIKFLLKKVGPSEALFFSPK 249 (309)
Q Consensus 218 ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~ 249 (309)
.+..++....+++++| .++++...
T Consensus 68 ------~~~~~~~~~~~l~~~G--~~v~vg~~ 91 (130)
T PF00107_consen 68 ------SGDTLQEAIKLLRPGG--RIVVVGVY 91 (130)
T ss_dssp ------SHHHHHHHHHHEEEEE--EEEEESST
T ss_pred ------cHHHHHHHHHHhccCC--EEEEEEcc
Confidence 2567888889999999 56555543
No 394
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=75.58 E-value=9.3 Score=35.24 Aligned_cols=103 Identities=16% Similarity=0.070 Sum_probs=60.3
Q ss_pred cCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-CCCC
Q 021691 130 ADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP-YIVD 207 (309)
Q Consensus 130 ~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~-~~~~ 207 (309)
....+|++||=.|+|. |...+.+|+..+...|+++|.+++-.+.++. .+.. .-+.....++...-.. ....
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~v~~~~~~~~~~i~~~~~~~ 234 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGAT---DIVDYKNGDVVEQILKLTGGK 234 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc---eEecCCCCCHHHHHHHHhCCC
Confidence 3456789999999874 7777788888877789999998876666653 2221 0010000000000000 1124
Q ss_pred CccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 208 TFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 208 ~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
.+|+|+-+ .-. ...+....++|+++| .++.+.
T Consensus 235 ~~d~vld~--~g~----~~~~~~~~~~l~~~G--~~v~~g 266 (351)
T cd08285 235 GVDAVIIA--GGG----QDTFEQALKVLKPGG--TISNVN 266 (351)
T ss_pred CCcEEEEC--CCC----HHHHHHHHHHhhcCC--EEEEec
Confidence 58988852 211 346778888899998 455443
No 395
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=75.56 E-value=5.6 Score=37.61 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=25.3
Q ss_pred CCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCC
Q 021691 133 FRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGN 167 (309)
Q Consensus 133 ~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~ 167 (309)
..+++|+=+|||. |..........|..+++.+|.+
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4678999999984 6443333344677899999987
No 396
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=75.35 E-value=45 Score=28.80 Aligned_cols=78 Identities=18% Similarity=0.209 Sum_probs=47.0
Q ss_pred CCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC--------
Q 021691 134 RSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP-------- 203 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~-------- 203 (309)
++++||=.|+ +|.+|..+++.+ .+.+|++++.++...+.+...+...+ .++.....|..+...-
T Consensus 3 ~~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~ 76 (258)
T PRK12429 3 KGKVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG-----GKAIGVAMDVTDEEAINAGIDYAV 76 (258)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC-----CcEEEEEcCCCCHHHHHHHHHHHH
Confidence 5678886665 566677666643 25689999999887776655554432 2455555555433210
Q ss_pred CCCCCccEEEEcCC
Q 021691 204 YIVDTFDVIVASDC 217 (309)
Q Consensus 204 ~~~~~fDvIi~~d~ 217 (309)
...+.+|+|+.+-.
T Consensus 77 ~~~~~~d~vi~~a~ 90 (258)
T PRK12429 77 ETFGGVDILVNNAG 90 (258)
T ss_pred HHcCCCCEEEECCC
Confidence 01246899887543
No 397
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.19 E-value=49 Score=28.31 Aligned_cols=78 Identities=14% Similarity=0.155 Sum_probs=45.0
Q ss_pred CCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC--------C
Q 021691 134 RSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF--------P 203 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~--------~ 203 (309)
.+++||=.|+ +|.+|..+++.+ .+.+|++++.++.-.+.+...+...+ .++.....|..+... .
T Consensus 6 ~~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~ 79 (239)
T PRK07666 6 QGKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG-----VKVVIATADVSDYEEVTAAIEQLK 79 (239)
T ss_pred CCCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC-----CeEEEEECCCCCHHHHHHHHHHHH
Confidence 4678888885 566666665543 25699999998876665554443322 234444444432211 0
Q ss_pred CCCCCccEEEEcCC
Q 021691 204 YIVDTFDVIVASDC 217 (309)
Q Consensus 204 ~~~~~fDvIi~~d~ 217 (309)
...+..|+|+.+-.
T Consensus 80 ~~~~~id~vi~~ag 93 (239)
T PRK07666 80 NELGSIDILINNAG 93 (239)
T ss_pred HHcCCccEEEEcCc
Confidence 01146799887643
No 398
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=75.16 E-value=1.4 Score=33.97 Aligned_cols=38 Identities=34% Similarity=0.432 Sum_probs=27.4
Q ss_pred CccEEEEcCCCCC------cccHHHHHHHHHHHHhcCCCeEEEEEee
Q 021691 208 TFDVIVASDCTFF------KEFHKDLARIIKFLLKKVGPSEALFFSP 248 (309)
Q Consensus 208 ~fDvIi~~d~ly~------~~~~~~ll~~l~~lLk~~G~~~~ii~~~ 248 (309)
+||+|+|-.+.-+ .+-+..+++.+..+|+||| .++..+
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG---~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGG---ILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEE---EEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCC---EEEEeC
Confidence 4899999877643 4557789999999999999 444443
No 399
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=75.08 E-value=15 Score=34.20 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=28.6
Q ss_pred cCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHH
Q 021691 132 MFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQ 169 (309)
Q Consensus 132 ~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~ 169 (309)
..+|.+||=.|+|. |...+.+|+..++ +|++++.+++
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~ 218 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSN 218 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcc
Confidence 34688999899984 8888888888765 7888887654
No 400
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=74.96 E-value=7.3 Score=36.37 Aligned_cols=47 Identities=21% Similarity=0.220 Sum_probs=36.9
Q ss_pred cCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHH
Q 021691 130 ADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQR 176 (309)
Q Consensus 130 ~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~ 176 (309)
....+|.+||=.|+|. |...+.+|+..+..+|+++|.+++-++.++.
T Consensus 180 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~ 227 (365)
T cd08277 180 AKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE 227 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 4556789999999874 7777778888877689999998877776643
No 401
>PRK06181 short chain dehydrogenase; Provisional
Probab=74.85 E-value=45 Score=29.07 Aligned_cols=77 Identities=13% Similarity=0.133 Sum_probs=42.5
Q ss_pred CeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC--------CC
Q 021691 136 KRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP--------YI 205 (309)
Q Consensus 136 ~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~--------~~ 205 (309)
++||=.|+ +|.+|..+++.+ .+.+|++++.++.-.+.+...+...+ ..+.+...|..+...- ..
T Consensus 2 ~~vlVtGa-sg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~~ 75 (263)
T PRK06181 2 KVVIITGA-SEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG-----GEALVVPTDVSDAEACERLIEAAVAR 75 (263)
T ss_pred CEEEEecC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-----CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 56776665 445555554332 24689999998876665555444322 2345555555432210 00
Q ss_pred CCCccEEEEcCCC
Q 021691 206 VDTFDVIVASDCT 218 (309)
Q Consensus 206 ~~~fDvIi~~d~l 218 (309)
.+..|+|+.+-..
T Consensus 76 ~~~id~vi~~ag~ 88 (263)
T PRK06181 76 FGGIDILVNNAGI 88 (263)
T ss_pred cCCCCEEEECCCc
Confidence 1357998876543
No 402
>PRK06914 short chain dehydrogenase; Provisional
Probab=74.84 E-value=59 Score=28.63 Aligned_cols=80 Identities=16% Similarity=0.192 Sum_probs=45.1
Q ss_pred CCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-------C
Q 021691 134 RSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP-------Y 204 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~-------~ 204 (309)
.+++||=.|++.| +|..+++.+ .+.+|++++.+++.++.+...+...+. ...+.+...|..+...- .
T Consensus 2 ~~k~~lItGasg~-iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~D~~d~~~~~~~~~~~~ 77 (280)
T PRK06914 2 NKKIAIVTGASSG-FGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNL---QQNIKVQQLDVTDQNSIHNFQLVLK 77 (280)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC---CCceeEEecCCCCHHHHHHHHHHHH
Confidence 3577888886544 444444321 256899999888777666554443322 12455556666543210 0
Q ss_pred CCCCccEEEEcCC
Q 021691 205 IVDTFDVIVASDC 217 (309)
Q Consensus 205 ~~~~fDvIi~~d~ 217 (309)
.-++.|+|+.+..
T Consensus 78 ~~~~id~vv~~ag 90 (280)
T PRK06914 78 EIGRIDLLVNNAG 90 (280)
T ss_pred hcCCeeEEEECCc
Confidence 1245788877643
No 403
>PRK08251 short chain dehydrogenase; Provisional
Probab=74.78 E-value=54 Score=28.18 Aligned_cols=78 Identities=13% Similarity=0.181 Sum_probs=46.4
Q ss_pred CCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC--------CC
Q 021691 135 SKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF--------PY 204 (309)
Q Consensus 135 g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~--------~~ 204 (309)
+++||=.|+ +|.+|..+++.+ .+.+|++++.+++.++.+...+..... ...+.+...|..+... ..
T Consensus 2 ~k~vlItGa-s~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~ 77 (248)
T PRK08251 2 RQKILITGA-SSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYP---GIKVAVAALDVNDHDQVFEVFAEFRD 77 (248)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCC---CceEEEEEcCCCCHHHHHHHHHHHHH
Confidence 567887775 555666555543 246899999998877776655543211 1345666666654321 01
Q ss_pred CCCCccEEEEcC
Q 021691 205 IVDTFDVIVASD 216 (309)
Q Consensus 205 ~~~~fDvIi~~d 216 (309)
..+..|+|+.+.
T Consensus 78 ~~~~id~vi~~a 89 (248)
T PRK08251 78 ELGGLDRVIVNA 89 (248)
T ss_pred HcCCCCEEEECC
Confidence 124678888754
No 404
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=74.55 E-value=6 Score=34.58 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=24.7
Q ss_pred CCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCH
Q 021691 133 FRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNP 168 (309)
Q Consensus 133 ~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~ 168 (309)
..+++|+=+|||. |..-.....+.|..+++.+|.+.
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 3567999999984 64433333446788999998654
No 405
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=74.51 E-value=6.7 Score=36.87 Aligned_cols=36 Identities=22% Similarity=0.318 Sum_probs=25.2
Q ss_pred CCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCH
Q 021691 133 FRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNP 168 (309)
Q Consensus 133 ~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~ 168 (309)
..+.+||=+|||. |..........|-++++.+|.+.
T Consensus 26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 3567999999984 54433333446778999999764
No 406
>PRK08339 short chain dehydrogenase; Provisional
Probab=74.37 E-value=44 Score=29.43 Aligned_cols=79 Identities=14% Similarity=0.202 Sum_probs=46.2
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-------
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP------- 203 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~------- 203 (309)
+.||++|=.|++.|+ |..+|+.+ .+.+|+++|.+++-++.+.+.+.... ..++.+...|..+...-
T Consensus 6 l~~k~~lItGas~gI-G~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~i~~~~~~~ 80 (263)
T PRK08339 6 LSGKLAFTTASSKGI-GFGVARVLARAGADVILLSRNEENLKKAREKIKSES----NVDVSYIVADLTKREDLERTVKEL 80 (263)
T ss_pred CCCCEEEEeCCCCcH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc----CCceEEEEecCCCHHHHHHHHHHH
Confidence 468899988887653 33333332 25689999999877776666554321 12345555555433210
Q ss_pred CCCCCccEEEEcC
Q 021691 204 YIVDTFDVIVASD 216 (309)
Q Consensus 204 ~~~~~fDvIi~~d 216 (309)
...+..|+++.+-
T Consensus 81 ~~~g~iD~lv~na 93 (263)
T PRK08339 81 KNIGEPDIFFFST 93 (263)
T ss_pred HhhCCCcEEEECC
Confidence 0124689888754
No 407
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=74.37 E-value=12 Score=35.54 Aligned_cols=47 Identities=28% Similarity=0.263 Sum_probs=36.1
Q ss_pred cCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHH
Q 021691 130 ADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQR 176 (309)
Q Consensus 130 ~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~ 176 (309)
....+|.+||=.|+|. |...+.+|+..+...|+++|.+++-++.+++
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~ 228 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARS 228 (393)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 4456788888888884 8888888888887778888988877776654
No 408
>PRK07454 short chain dehydrogenase; Provisional
Probab=74.08 E-value=56 Score=28.00 Aligned_cols=79 Identities=8% Similarity=0.119 Sum_probs=46.3
Q ss_pred CCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC--------
Q 021691 134 RSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP-------- 203 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~-------- 203 (309)
.++++|=.|+ +|.+|..+++.+ .+.+|++++.+++-.+.+...+...+ .++.+...|..+.+.-
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~ 78 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG-----VKAAAYSIDLSNPEAIAPGIAELL 78 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC-----CcEEEEEccCCCHHHHHHHHHHHH
Confidence 4578888885 566666666543 24589999998876666555443321 2345555555433210
Q ss_pred CCCCCccEEEEcCCC
Q 021691 204 YIVDTFDVIVASDCT 218 (309)
Q Consensus 204 ~~~~~fDvIi~~d~l 218 (309)
...++.|+|+.+...
T Consensus 79 ~~~~~id~lv~~ag~ 93 (241)
T PRK07454 79 EQFGCPDVLINNAGM 93 (241)
T ss_pred HHcCCCCEEEECCCc
Confidence 011457999876543
No 409
>PRK07326 short chain dehydrogenase; Provisional
Probab=73.23 E-value=52 Score=28.07 Aligned_cols=77 Identities=16% Similarity=0.210 Sum_probs=44.9
Q ss_pred CCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC--------
Q 021691 134 RSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP-------- 203 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~-------- 203 (309)
.+++||=.|+ +|.+|..+++.+ .+.+|++++.++.-.+.+...+... ..+.....|..+...-
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~D~~~~~~~~~~~~~~~ 77 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK------GNVLGLAADVRDEADVQRAVDAIV 77 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc------CcEEEEEccCCCHHHHHHHHHHHH
Confidence 4688998885 566666655443 2458999999887666555544321 2344555554432110
Q ss_pred CCCCCccEEEEcCC
Q 021691 204 YIVDTFDVIVASDC 217 (309)
Q Consensus 204 ~~~~~fDvIi~~d~ 217 (309)
...+.+|+|+.+..
T Consensus 78 ~~~~~~d~vi~~ag 91 (237)
T PRK07326 78 AAFGGLDVLIANAG 91 (237)
T ss_pred HHcCCCCEEEECCC
Confidence 01136898887543
No 410
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=72.92 E-value=59 Score=27.75 Aligned_cols=79 Identities=19% Similarity=0.215 Sum_probs=46.0
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEE-cCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC------
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATT--EALEVVIS-DGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP------ 203 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~t-D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~------ 203 (309)
+.+++||=.|+ +|.+|..+++.+ .+.+|+.+ +.+++.++.+...+...+ .++.+...|..+...-
T Consensus 3 ~~~~~ilI~Ga-sg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~ 76 (247)
T PRK05565 3 LMGKVAIVTGA-SGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEG-----GDAIAVKADVSSEEDVENLVEQ 76 (247)
T ss_pred CCCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-----CeEEEEECCCCCHHHHHHHHHH
Confidence 35678888875 566666655432 24688888 988776665555544322 2455566665543210
Q ss_pred --CCCCCccEEEEcCC
Q 021691 204 --YIVDTFDVIVASDC 217 (309)
Q Consensus 204 --~~~~~fDvIi~~d~ 217 (309)
...+.+|+|+.+..
T Consensus 77 ~~~~~~~id~vi~~ag 92 (247)
T PRK05565 77 IVEKFGKIDILVNNAG 92 (247)
T ss_pred HHHHhCCCCEEEECCC
Confidence 00136899988654
No 411
>PRK09291 short chain dehydrogenase; Provisional
Probab=72.19 E-value=64 Score=27.86 Aligned_cols=76 Identities=14% Similarity=0.085 Sum_probs=44.5
Q ss_pred CCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC--CCCCCcc
Q 021691 135 SKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP--YIVDTFD 210 (309)
Q Consensus 135 g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~--~~~~~fD 210 (309)
+++||=.|++. .+|..+++.+ .+.+|++++.++.-.+.++......+. .+.+...|+.+...- ......|
T Consensus 2 ~~~vlVtGasg-~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~id 75 (257)
T PRK09291 2 SKTILITGAGS-GFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGL-----ALRVEKLDLTDAIDRAQAAEWDVD 75 (257)
T ss_pred CCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-----cceEEEeeCCCHHHHHHHhcCCCC
Confidence 46788888754 4455444432 256899999887666555544433322 356666776543211 1123689
Q ss_pred EEEEcC
Q 021691 211 VIVASD 216 (309)
Q Consensus 211 vIi~~d 216 (309)
+|+.+.
T Consensus 76 ~vi~~a 81 (257)
T PRK09291 76 VLLNNA 81 (257)
T ss_pred EEEECC
Confidence 988854
No 412
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=72.00 E-value=5.5 Score=39.82 Aligned_cols=58 Identities=17% Similarity=-0.003 Sum_probs=41.8
Q ss_pred CCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCC-cEEEEEcCCH
Q 021691 109 NTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEA-LEVVISDGNP 168 (309)
Q Consensus 109 ~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~-~~V~~tD~~~ 168 (309)
.+|++ =.|+..|.+.=....-+-++..||||||..|.....+++.+|. .-|+|+|+-|
T Consensus 21 e~Gyr--sRsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 21 ELGYR--SRSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred Hhchh--HHHHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 34654 4556666655444444557889999999999998888888775 4689999754
No 413
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=71.95 E-value=25 Score=32.64 Aligned_cols=95 Identities=18% Similarity=0.136 Sum_probs=52.5
Q ss_pred CCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCC-CCCCCCCCcc
Q 021691 133 FRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQD-DFPYIVDTFD 210 (309)
Q Consensus 133 ~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~-~~~~~~~~fD 210 (309)
.+|.+||=.|+|. |...+.+|+..+. +|++++.+++-.+.+.+. .+.. .+ ++.... ........+|
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~~~---~Ga~----~~----i~~~~~~~~~~~~~~~D 246 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEALEH---LGAD----DY----LVSSDAAEMQEAADSLD 246 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHh---cCCc----EE----ecCCChHHHHHhcCCCc
Confidence 4788999888874 7777788887765 688888776554443322 2221 00 011000 0001112478
Q ss_pred EEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 211 VIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 211 vIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
+|+-+ +-. ...+....++++++| .++.+.
T Consensus 247 ~vid~--~g~----~~~~~~~~~~l~~~G--~iv~~G 275 (357)
T PLN02514 247 YIIDT--VPV----FHPLEPYLSLLKLDG--KLILMG 275 (357)
T ss_pred EEEEC--CCc----hHHHHHHHHHhccCC--EEEEEC
Confidence 88753 221 235566677888888 455443
No 414
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=71.92 E-value=49 Score=31.93 Aligned_cols=125 Identities=15% Similarity=0.141 Sum_probs=64.2
Q ss_pred CCCeEEEeCC-CCChhhHH--HHH-h---cCCcEEEEEcCCHH---HHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC
Q 021691 134 RSKRVIELGS-GYGLAGLV--IAA-T---TEALEVVISDGNPQ---VVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP 203 (309)
Q Consensus 134 ~g~~VLELG~-GtG~~~l~--la~-~---~~~~~V~~tD~~~~---~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~ 203 (309)
+++.++=+|. |+|-.+.. +|. . .++.+|..+|.++. +.+.++......++. +... . ...+..
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp-----~~~~-~--~~~~l~ 291 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIP-----VEVV-Y--DPKELA 291 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCc-----eEcc-C--CHHhHH
Confidence 3567777784 67744321 222 1 24568998888774 455565555544442 1110 0 000000
Q ss_pred ---CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhc-C-C-CeEEEEEeecCCchHHHHHHHHHhCCCe
Q 021691 204 ---YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKK-V-G-PSEALFFSPKRGDSLDKFLEEIEGNHLH 267 (309)
Q Consensus 204 ---~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~-~-G-~~~~ii~~~~r~~~~~~f~~~~~~~G~~ 267 (309)
.....+|+|+. |..-....-...+..+..+++. + . ...+++.+......+....+.+...++.
T Consensus 292 ~~l~~~~~~DlVlI-Dt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~ 360 (424)
T PRK05703 292 KALEQLRDCDVILI-DTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPLD 360 (424)
T ss_pred HHHHHhCCCCEEEE-eCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCCC
Confidence 01235899998 5544433445556677777762 1 1 1233444444555666666666666653
No 415
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.83 E-value=14 Score=34.66 Aligned_cols=35 Identities=20% Similarity=0.287 Sum_probs=29.0
Q ss_pred CCCeEEEeCCCCChhhHHHHHhcCCcEEEE---EcCCH
Q 021691 134 RSKRVIELGSGYGLAGLVIAATTEALEVVI---SDGNP 168 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~---tD~~~ 168 (309)
++..++|+|||-|-++..++..++..+|+. +|...
T Consensus 182 ~~~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s 219 (420)
T KOG2811|consen 182 PSSCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKS 219 (420)
T ss_pred CcceEEEecCCchHHHHHHHHHhccccEEEEEeecccc
Confidence 346899999999999999999888877777 77543
No 416
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=71.78 E-value=15 Score=28.99 Aligned_cols=63 Identities=11% Similarity=0.078 Sum_probs=39.1
Q ss_pred CCCccEEEEcCCCCCccc----HHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEeccCc
Q 021691 206 VDTFDVIVASDCTFFKEF----HKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYNA 276 (309)
Q Consensus 206 ~~~fDvIi~~d~ly~~~~----~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~~~~ 276 (309)
...||+|+. |.+--..+ -..+++.+.++++++| ++.+.... ......+.++||.++....+..
T Consensus 48 ~~~~Da~yl-DgFsP~~nPelWs~e~~~~l~~~~~~~~----~l~Tys~a---~~Vr~~L~~aGF~v~~~~g~g~ 114 (124)
T PF05430_consen 48 DARFDAWYL-DGFSPAKNPELWSEELFKKLARLSKPGG----TLATYSSA---GAVRRALQQAGFEVEKVPGFGR 114 (124)
T ss_dssp -T-EEEEEE--SS-TTTSGGGSSHHHHHHHHHHEEEEE----EEEES--B---HHHHHHHHHCTEEEEEEE-STT
T ss_pred cccCCEEEe-cCCCCcCCcccCCHHHHHHHHHHhCCCc----EEEEeech---HHHHHHHHHcCCEEEEcCCCCC
Confidence 367888887 44222111 2679999999999988 22232221 3477889999999988876543
No 417
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=71.39 E-value=36 Score=28.38 Aligned_cols=99 Identities=15% Similarity=0.117 Sum_probs=55.1
Q ss_pred CCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHH-HHHHHhccCCCCCCceEEE-EeeCCCCCCCCCCCCccEE
Q 021691 135 SKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYI-QRNVDANSGAFGGTTVKSM-TLHWNQDDFPYIVDTFDVI 212 (309)
Q Consensus 135 g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~-~~n~~~n~~~~~~~~v~~~-~l~w~~~~~~~~~~~fDvI 212 (309)
|++++=+|+..=.+-.. |...|+++|+.++.++--++.- +. +++.. ..++.. +...-.++||++
T Consensus 2 ~~~g~V~GS~~PwvEv~-aL~~GA~~iltveyn~L~i~~~~~d------------r~ssi~p~df~~-~~~~y~~~fD~~ 67 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVM-ALQHGAAKILTVEYNKLEIQEEFRD------------RLSSILPVDFAK-NWQKYAGSFDFA 67 (177)
T ss_pred CceEEEEecCCchhhHH-HHHcCCceEEEEeecccccCccccc------------ccccccHHHHHH-HHHHhhccchhh
Confidence 68889999986555443 5557889999999864211110 10 11000 000000 000123578888
Q ss_pred EEcCCCCCc-----------ccHHHHHHHHHHHHhcCCCeEEEEEeec
Q 021691 213 VASDCTFFK-----------EFHKDLARIIKFLLKKVGPSEALFFSPK 249 (309)
Q Consensus 213 i~~d~ly~~-----------~~~~~ll~~l~~lLk~~G~~~~ii~~~~ 249 (309)
.+...+.+. .-....+..++++||+|| .+++..|.
T Consensus 68 as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG--~L~l~vPv 113 (177)
T PF03269_consen 68 ASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGG--LLFLGVPV 113 (177)
T ss_pred heechhccccccccCCCCCccccHHHHHHHHHhhccCC--eEEEEeec
Confidence 776665431 223456778899999999 45555443
No 418
>PTZ00357 methyltransferase; Provisional
Probab=71.35 E-value=38 Score=34.82 Aligned_cols=101 Identities=14% Similarity=0.086 Sum_probs=58.6
Q ss_pred eEEEeCCCCChh-h--HHHHHhcCC-cEEEEEcCCHHHHHHHHHHHHh-ccCCC----CCCceEEEEeeCCCCCCC----
Q 021691 137 RVIELGSGYGLA-G--LVIAATTEA-LEVVISDGNPQVVDYIQRNVDA-NSGAF----GGTTVKSMTLHWNQDDFP---- 203 (309)
Q Consensus 137 ~VLELG~GtG~~-~--l~la~~~~~-~~V~~tD~~~~~l~~~~~n~~~-n~~~~----~~~~v~~~~l~w~~~~~~---- 203 (309)
.|+=+|+|-|-+ . +.+++..+. -+|++++-|+.++..++.+... +.... ....|++..-|......+
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 588999999843 3 333333332 3799999997655444443211 11210 123466665554332211
Q ss_pred -----CCCCCccEEEE--cCCCCCcccHHHHHHHHHHHHhc
Q 021691 204 -----YIVDTFDVIVA--SDCTFFKEFHKDLARIIKFLLKK 237 (309)
Q Consensus 204 -----~~~~~fDvIi~--~d~ly~~~~~~~ll~~l~~lLk~ 237 (309)
..-+++|+||+ -..+-+.+.-+..+.-+.+.||+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKd 823 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLED 823 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhh
Confidence 11247999998 33455566677788888888876
No 419
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=70.87 E-value=80 Score=28.38 Aligned_cols=84 Identities=14% Similarity=0.228 Sum_probs=54.5
Q ss_pred CcCCCCeEEEeCCCCChh---hHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC-----
Q 021691 131 DMFRSKRVIELGSGYGLA---GLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF----- 202 (309)
Q Consensus 131 ~~~~g~~VLELG~GtG~~---~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~----- 202 (309)
..+.|+.+|-=|++.|+- +..+|+. +++|+.++.+++.++.....+...+.. ..++.....|....+.
T Consensus 4 ~~l~gkvalVTG~s~GIG~aia~~la~~--Ga~v~i~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~~~~l~ 79 (270)
T KOG0725|consen 4 GRLAGKVALVTGGSSGIGKAIALLLAKA--GAKVVITGRSEERLEETAQELGGLGYT--GGKVLAIVCDVSKEVDVEKLV 79 (270)
T ss_pred ccCCCcEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCC--CCeeEEEECcCCCHHHHHHHH
Confidence 356899999999987743 4455554 679999999999988887776665542 2344444454432211
Q ss_pred ----CCCCCCccEEEEcCCC
Q 021691 203 ----PYIVDTFDVIVASDCT 218 (309)
Q Consensus 203 ----~~~~~~fDvIi~~d~l 218 (309)
....++.|+++.+.-.
T Consensus 80 ~~~~~~~~GkidiLvnnag~ 99 (270)
T KOG0725|consen 80 EFAVEKFFGKIDILVNNAGA 99 (270)
T ss_pred HHHHHHhCCCCCEEEEcCCc
Confidence 1114678999886633
No 420
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=70.37 E-value=17 Score=33.66 Aligned_cols=99 Identities=19% Similarity=0.151 Sum_probs=56.1
Q ss_pred CCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC---CC-CCCCCCC
Q 021691 134 RSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ---DD-FPYIVDT 208 (309)
Q Consensus 134 ~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~---~~-~~~~~~~ 208 (309)
+|.+||=.|+|. |...+.+|+..+..+|++++.+++-.+.+++ .+.. .-+.....++.. .- .......
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~~~~~~~~ 249 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FGAD---ATIDIDELPDPQRRAIVRDITGGRG 249 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCC---eEEcCcccccHHHHHHHHHHhCCCC
Confidence 788999888874 7777778888776689999988776655532 2221 001000000000 00 0011246
Q ss_pred ccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 209 FDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 209 fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
+|+|+-. ... ...+....+.++++| .++.+.
T Consensus 250 ~d~vid~--~g~----~~~~~~~~~~l~~~G--~~v~~g 280 (361)
T cd08231 250 ADVVIEA--SGH----PAAVPEGLELLRRGG--TYVLVG 280 (361)
T ss_pred CcEEEEC--CCC----hHHHHHHHHHhccCC--EEEEEc
Confidence 8998853 111 345667778888988 555544
No 421
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=70.31 E-value=47 Score=29.90 Aligned_cols=87 Identities=23% Similarity=0.211 Sum_probs=53.1
Q ss_pred CcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCc
Q 021691 131 DMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTF 209 (309)
Q Consensus 131 ~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~f 209 (309)
...+|.+||=.|+|. |...+.+|+..|. +|++++.+++..+.+++ .+.. . ..++... .....+
T Consensus 152 ~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~----~g~~----~----~~~~~~~---~~~~~~ 215 (319)
T cd08242 152 PITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARR----LGVE----T----VLPDEAE---SEGGGF 215 (319)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH----cCCc----E----EeCcccc---ccCCCC
Confidence 455788999888763 6666666776654 69999998888777765 2221 0 0111111 123468
Q ss_pred cEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691 210 DVIVASDCTFFKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 210 DvIi~~d~ly~~~~~~~ll~~l~~lLk~~G 239 (309)
|+|+-. .-. ...+....+.|+++|
T Consensus 216 d~vid~--~g~----~~~~~~~~~~l~~~g 239 (319)
T cd08242 216 DVVVEA--TGS----PSGLELALRLVRPRG 239 (319)
T ss_pred CEEEEC--CCC----hHHHHHHHHHhhcCC
Confidence 998863 211 334566677788888
No 422
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=70.28 E-value=34 Score=26.11 Aligned_cols=73 Identities=11% Similarity=0.145 Sum_probs=39.3
Q ss_pred eEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEcC
Q 021691 137 RVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASD 216 (309)
Q Consensus 137 ~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d 216 (309)
+|| +-||+|..+-.+++ .+++-++.+|+. +.+......+.........+|+|+.+
T Consensus 3 kIL-lvCg~G~STSlla~------------------k~k~~~~e~gi~-----~~i~a~~~~e~~~~~~~~~~DvIll~- 57 (104)
T PRK09590 3 KAL-IICAAGMSSSMMAK------------------KTTEYLKEQGKD-----IEVDAITATEGEKAIAAAEYDLYLVS- 57 (104)
T ss_pred EEE-EECCCchHHHHHHH------------------HHHHHHHHCCCc-----eEEEEecHHHHHHhhccCCCCEEEEC-
Confidence 455 67888876555444 345555667662 33333322211111112468999984
Q ss_pred CCCCcccHHHHHHHHHHHHhcCC
Q 021691 217 CTFFKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 217 ~ly~~~~~~~ll~~l~~lLk~~G 239 (309)
+...-..+.+...+.+.+
T Consensus 58 -----PQi~~~~~~i~~~~~~~~ 75 (104)
T PRK09590 58 -----PQTKMYFKQFEEAGAKVG 75 (104)
T ss_pred -----hHHHHHHHHHHHHhhhcC
Confidence 344555667777776554
No 423
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=69.86 E-value=25 Score=31.79 Aligned_cols=106 Identities=17% Similarity=0.020 Sum_probs=57.6
Q ss_pred CCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCc
Q 021691 144 GYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFK 221 (309)
Q Consensus 144 GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~ 221 (309)
|.|..|..+|+.+ .+.+|++.|.+++.++.+.. .+.. + . ..........|+|+.+-+ ..
T Consensus 3 GlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~----~g~~-----~-~-------~s~~~~~~~advVil~vp--~~ 63 (288)
T TIGR01692 3 GLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVA----AGAQ-----A-A-------ASPAEAAEGADRVITMLP--AG 63 (288)
T ss_pred cccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH----cCCe-----e-c-------CCHHHHHhcCCEEEEeCC--Ch
Confidence 4555555444432 24589999999877666543 2220 0 0 011111234688887522 22
Q ss_pred ccHHHHH---HHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEE
Q 021691 222 EFHKDLA---RIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSI 270 (309)
Q Consensus 222 ~~~~~ll---~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~ 270 (309)
.....++ +.+...++++. .++.+++..+.+..++.+.+.+.|..+..
T Consensus 64 ~~~~~v~~g~~~l~~~~~~g~--~vid~st~~p~~~~~~~~~~~~~g~~~vd 113 (288)
T TIGR01692 64 QHVISVYSGDEGILPKVAKGS--LLIDCSTIDPDSARKLAELAAAHGAVFMD 113 (288)
T ss_pred HHHHHHHcCcchHhhcCCCCC--EEEECCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 2334444 34444444443 44555555667777888888888877644
No 424
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=69.76 E-value=58 Score=29.41 Aligned_cols=92 Identities=16% Similarity=0.046 Sum_probs=54.0
Q ss_pred cCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCC
Q 021691 130 ADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDT 208 (309)
Q Consensus 130 ~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~ 208 (309)
....+|.+||=.|+|. |...+.+|+..+ .+|++++.+++-.+.++. .+.. .+ ++.. .. ....
T Consensus 163 ~~~~~~~~vlV~g~g~vg~~~~~la~~~g-~~v~~~~~~~~~~~~~~~----~g~~----~~----~~~~-~~---~~~~ 225 (329)
T cd08298 163 AGLKPGQRLGLYGFGASAHLALQIARYQG-AEVFAFTRSGEHQELARE----LGAD----WA----GDSD-DL---PPEP 225 (329)
T ss_pred hCCCCCCEEEEECCcHHHHHHHHHHHHCC-CeEEEEcCChHHHHHHHH----hCCc----EE----eccC-cc---CCCc
Confidence 3455678888888763 666666677655 589999888765555532 2221 00 1100 00 1235
Q ss_pred ccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691 209 FDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFF 246 (309)
Q Consensus 209 fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~ 246 (309)
+|+++.... ....+..+.+.++++| .++..
T Consensus 226 vD~vi~~~~------~~~~~~~~~~~l~~~G--~~v~~ 255 (329)
T cd08298 226 LDAAIIFAP------VGALVPAALRAVKKGG--RVVLA 255 (329)
T ss_pred ccEEEEcCC------cHHHHHHHHHHhhcCC--EEEEE
Confidence 888876322 1346788888999988 44443
No 425
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=69.75 E-value=72 Score=27.45 Aligned_cols=49 Identities=14% Similarity=0.248 Sum_probs=33.3
Q ss_pred CcCCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHh
Q 021691 131 DMFRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDA 180 (309)
Q Consensus 131 ~~~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~ 180 (309)
...++++||=.|+ +|.+|..+++.+ .+.+|+++|.+++.++.+...+..
T Consensus 8 ~~~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~ 58 (247)
T PRK08945 8 DLLKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEA 58 (247)
T ss_pred cccCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHh
Confidence 3457899999995 555565555433 245999999998777666555544
No 426
>PRK07774 short chain dehydrogenase; Provisional
Probab=69.30 E-value=73 Score=27.35 Aligned_cols=80 Identities=21% Similarity=0.268 Sum_probs=45.3
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-------
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP------- 203 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~------- 203 (309)
..+++||=.|+ +|.+|..+++.+ .+.+|+++|.++...+.+...+...+ ..+.....|..+....
T Consensus 4 ~~~k~vlItGa-sg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~ 77 (250)
T PRK07774 4 FDDKVAIVTGA-AGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADG-----GTAIAVQVDVSDPDSAKAMADAT 77 (250)
T ss_pred cCCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-----CcEEEEEcCCCCHHHHHHHHHHH
Confidence 35788888884 455566655533 25689999998766665555443221 1233444444432210
Q ss_pred -CCCCCccEEEEcCCC
Q 021691 204 -YIVDTFDVIVASDCT 218 (309)
Q Consensus 204 -~~~~~fDvIi~~d~l 218 (309)
...+..|+||.+-..
T Consensus 78 ~~~~~~id~vi~~ag~ 93 (250)
T PRK07774 78 VSAFGGIDYLVNNAAI 93 (250)
T ss_pred HHHhCCCCEEEECCCC
Confidence 011368999986544
No 427
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=69.18 E-value=11 Score=35.90 Aligned_cols=47 Identities=23% Similarity=0.247 Sum_probs=36.3
Q ss_pred CcCCCCeEEEeC-CC-CChhhHHHHHhcC--CcEEEEEcCCHHHHHHHHHH
Q 021691 131 DMFRSKRVIELG-SG-YGLAGLVIAATTE--ALEVVISDGNPQVVDYIQRN 177 (309)
Q Consensus 131 ~~~~g~~VLELG-~G-tG~~~l~la~~~~--~~~V~~tD~~~~~l~~~~~n 177 (309)
...+|.+||=+| +| .|...+.+|+..+ +.+|+++|.+++-++.+++.
T Consensus 172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 455788999887 56 4888888888753 45899999999988887764
No 428
>PRK05866 short chain dehydrogenase; Provisional
Probab=69.02 E-value=80 Score=28.39 Aligned_cols=80 Identities=14% Similarity=0.207 Sum_probs=46.7
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-------
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP------- 203 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~------- 203 (309)
..+++||=.|++.| +|..+|+.+ .+.+|++++.+++.++.+...+...+ ..+.+...|..+...-
T Consensus 38 ~~~k~vlItGasgg-IG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~-----~~~~~~~~Dl~d~~~v~~~~~~~ 111 (293)
T PRK05866 38 LTGKRILLTGASSG-IGEAAAEQFARRGATVVAVARREDLLDAVADRITRAG-----GDAMAVPCDLSDLDAVDALVADV 111 (293)
T ss_pred CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-----CcEEEEEccCCCHHHHHHHHHHH
Confidence 35788998887554 444444432 25699999999887776665554322 2344555555432210
Q ss_pred -CCCCCccEEEEcCCC
Q 021691 204 -YIVDTFDVIVASDCT 218 (309)
Q Consensus 204 -~~~~~fDvIi~~d~l 218 (309)
...+..|+++.+-..
T Consensus 112 ~~~~g~id~li~~AG~ 127 (293)
T PRK05866 112 EKRIGGVDILINNAGR 127 (293)
T ss_pred HHHcCCCCEEEECCCC
Confidence 012468999876533
No 429
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=68.95 E-value=86 Score=27.98 Aligned_cols=117 Identities=15% Similarity=0.186 Sum_probs=61.4
Q ss_pred cCCCCeEEEeCCCCChhhHHHHHh--cCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCc
Q 021691 132 MFRSKRVIELGSGYGLAGLVIAAT--TEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTF 209 (309)
Q Consensus 132 ~~~g~~VLELG~GtG~~~l~la~~--~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~f 209 (309)
...+++|+=+|+| | .|..++.. ..+.+|+.++.+++-.+.+.+.+...+ .+.. ..+... ....+
T Consensus 114 ~~~~k~vliiGaG-g-~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~------~~~~--~~~~~~----~~~~~ 179 (270)
T TIGR00507 114 LRPNQRVLIIGAG-G-AARAVALPLLKADCNVIIANRTVSKAEELAERFQRYG------EIQA--FSMDEL----PLHRV 179 (270)
T ss_pred CccCCEEEEEcCc-H-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcC------ceEE--echhhh----cccCc
Confidence 3467899999997 3 22222221 123589999998766555544443222 1122 111111 12358
Q ss_pred cEEEEcCCCCCcccHHH-HHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeE
Q 021691 210 DVIVASDCTFFKEFHKD-LARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHF 268 (309)
Q Consensus 210 DvIi~~d~ly~~~~~~~-ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~ 268 (309)
|+||.+-+.-....... .+ ....++++. .++-+.+....| .|.+.+++.|..+
T Consensus 180 DivInatp~gm~~~~~~~~~--~~~~l~~~~--~v~D~~y~p~~T--~ll~~A~~~G~~~ 233 (270)
T TIGR00507 180 DLIINATSAGMSGNIDEPPV--PAEKLKEGM--VVYDMVYNPGET--PFLAEAKSLGTKT 233 (270)
T ss_pred cEEEECCCCCCCCCCCCCCC--CHHHcCCCC--EEEEeccCCCCC--HHHHHHHHCCCee
Confidence 99999766543222110 11 123455544 333333333444 6999999999875
No 430
>PRK06194 hypothetical protein; Provisional
Probab=68.80 E-value=83 Score=27.80 Aligned_cols=80 Identities=14% Similarity=0.162 Sum_probs=45.1
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-------
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP------- 203 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~------- 203 (309)
.++++||=.|++ |.+|..+++.+ .+.+|+++|.+++.++.+...+...+ .++.+...|..+...-
T Consensus 4 ~~~k~vlVtGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~D~~d~~~~~~~~~~~ 77 (287)
T PRK06194 4 FAGKVAVITGAA-SGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQG-----AEVLGVRTDVSDAAQVEALADAA 77 (287)
T ss_pred CCCCEEEEeCCc-cHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC-----CeEEEEECCCCCHHHHHHHHHHH
Confidence 357889977764 44555554432 25689999998776665554443322 2344455554432110
Q ss_pred -CCCCCccEEEEcCCC
Q 021691 204 -YIVDTFDVIVASDCT 218 (309)
Q Consensus 204 -~~~~~fDvIi~~d~l 218 (309)
...+..|+|+.+-..
T Consensus 78 ~~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 78 LERFGAVHLLFNNAGV 93 (287)
T ss_pred HHHcCCCCEEEECCCC
Confidence 012457998886544
No 431
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=68.74 E-value=15 Score=34.11 Aligned_cols=103 Identities=17% Similarity=0.102 Sum_probs=57.2
Q ss_pred cCcCCCCeEEEeCCC-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-CCCC
Q 021691 130 ADMFRSKRVIELGSG-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP-YIVD 207 (309)
Q Consensus 130 ~~~~~g~~VLELG~G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~-~~~~ 207 (309)
....+|.+||=.|+| .|...+.+|+..+...|++++.+++-.+.++. .+.. .-+.....++...-.. ....
T Consensus 178 ~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~----~g~~---~vv~~~~~~~~~~l~~~~~~~ 250 (363)
T cd08279 178 ARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR----FGAT---HTVNASEDDAVEAVRDLTDGR 250 (363)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----hCCe---EEeCCCCccHHHHHHHHcCCC
Confidence 345678899988886 37777777887776569999988776655532 1221 0000000001000000 1134
Q ss_pred CccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 208 TFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 208 ~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
.+|+++.+ ... ...+....+.|+++| .++.+.
T Consensus 251 ~vd~vld~--~~~----~~~~~~~~~~l~~~G--~~v~~g 282 (363)
T cd08279 251 GADYAFEA--VGR----AATIRQALAMTRKGG--TAVVVG 282 (363)
T ss_pred CCCEEEEc--CCC----hHHHHHHHHHhhcCC--eEEEEe
Confidence 58988853 111 245677788888888 455443
No 432
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=68.72 E-value=3.7 Score=36.31 Aligned_cols=84 Identities=17% Similarity=0.275 Sum_probs=52.5
Q ss_pred cCCCCeEEEeCCC-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCC----------------CCceEEEE
Q 021691 132 MFRSKRVIELGSG-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFG----------------GTTVKSMT 194 (309)
Q Consensus 132 ~~~g~~VLELG~G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~----------------~~~v~~~~ 194 (309)
.++..+|+=+|+| .|........+.|-.+++.+|.+.-.+.++.+.+..-.-..+ .++|....
T Consensus 27 kl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~ 106 (263)
T COG1179 27 KLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAIN 106 (263)
T ss_pred HHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehH
Confidence 3456789999998 587777666667888999999887666666555443211111 23444444
Q ss_pred eeCCCCCCC-CCCCCccEEEEc
Q 021691 195 LHWNQDDFP-YIVDTFDVIVAS 215 (309)
Q Consensus 195 l~w~~~~~~-~~~~~fDvIi~~ 215 (309)
.-|..+... .....||+|+-+
T Consensus 107 ~f~t~en~~~~~~~~~DyvIDa 128 (263)
T COG1179 107 DFITEENLEDLLSKGFDYVIDA 128 (263)
T ss_pred hhhCHhHHHHHhcCCCCEEEEc
Confidence 445544332 234579999853
No 433
>PRK07063 short chain dehydrogenase; Provisional
Probab=68.11 E-value=81 Score=27.39 Aligned_cols=81 Identities=17% Similarity=0.239 Sum_probs=48.1
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-------
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP------- 203 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~------- 203 (309)
..+++||=.|++.| +|..+++.+ .+.+|+++|.+++.++.+.+.+..... ..++.+...|..+...-
T Consensus 5 l~~k~vlVtGas~g-IG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (260)
T PRK07063 5 LAGKVALVTGAAQG-IGAAIARAFAREGAAVALADLDAALAERAAAAIARDVA---GARVLAVPADVTDAASVAAAVAAA 80 (260)
T ss_pred cCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccC---CceEEEEEccCCCHHHHHHHHHHH
Confidence 46889998888654 344444332 256899999988877776666554211 12455555655443210
Q ss_pred -CCCCCccEEEEcCC
Q 021691 204 -YIVDTFDVIVASDC 217 (309)
Q Consensus 204 -~~~~~fDvIi~~d~ 217 (309)
...+.+|+++.+..
T Consensus 81 ~~~~g~id~li~~ag 95 (260)
T PRK07063 81 EEAFGPLDVLVNNAG 95 (260)
T ss_pred HHHhCCCcEEEECCC
Confidence 01246899887654
No 434
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=67.99 E-value=3.8 Score=36.34 Aligned_cols=36 Identities=22% Similarity=0.276 Sum_probs=24.6
Q ss_pred CCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCH
Q 021691 133 FRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNP 168 (309)
Q Consensus 133 ~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~ 168 (309)
..+++|+=+|||. |..........|..+++.+|.+.
T Consensus 30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 3567999999983 54433333345778999999754
No 435
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=67.81 E-value=12 Score=34.16 Aligned_cols=101 Identities=14% Similarity=0.156 Sum_probs=56.7
Q ss_pred CcCCCCeEEEeCCC-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC-CCCCCC
Q 021691 131 DMFRSKRVIELGSG-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF-PYIVDT 208 (309)
Q Consensus 131 ~~~~g~~VLELG~G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~-~~~~~~ 208 (309)
...+|.+||-.|+| .|...+.+|+..+...|++++.++...+.+++. +.. .-+.....+|...-. ......
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~~---~vi~~~~~~~~~~i~~~~~~~~ 236 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GAT---DIINPKNGDIVEQILELTGGRG 236 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CCc---EEEcCCcchHHHHHHHHcCCCC
Confidence 34578899998876 377777778877655899998887766665542 210 001111111110000 011246
Q ss_pred ccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691 209 FDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFF 246 (309)
Q Consensus 209 fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~ 246 (309)
+|+|+-+ ... ...+....+.|+++| .++.+
T Consensus 237 ~d~vld~--~g~----~~~~~~~~~~l~~~G--~~v~~ 266 (347)
T cd05278 237 VDCVIEA--VGF----EETFEQAVKVVRPGG--TIANV 266 (347)
T ss_pred CcEEEEc--cCC----HHHHHHHHHHhhcCC--EEEEE
Confidence 8988853 211 246677778888888 44443
No 436
>PRK09242 tropinone reductase; Provisional
Probab=67.77 E-value=82 Score=27.31 Aligned_cols=81 Identities=15% Similarity=0.210 Sum_probs=47.1
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC--------
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF-------- 202 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~-------- 202 (309)
..||++|=.|++.| +|..+++.+ .+.+|++++.+++.++.+..++..... ..++.....|..+...
T Consensus 7 ~~~k~~lItGa~~g-IG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (257)
T PRK09242 7 LDGQTALITGASKG-IGLAIAREFLGLGADVLIVARDADALAQARDELAEEFP---EREVHGLAADVSDDEDRRAILDWV 82 (257)
T ss_pred cCCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCC---CCeEEEEECCCCCHHHHHHHHHHH
Confidence 46889999988654 333333332 256899999988877776666654311 1244555555543221
Q ss_pred CCCCCCccEEEEcCC
Q 021691 203 PYIVDTFDVIVASDC 217 (309)
Q Consensus 203 ~~~~~~fDvIi~~d~ 217 (309)
....+++|+|+.+-.
T Consensus 83 ~~~~g~id~li~~ag 97 (257)
T PRK09242 83 EDHWDGLHILVNNAG 97 (257)
T ss_pred HHHcCCCCEEEECCC
Confidence 001246899887553
No 437
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=67.69 E-value=14 Score=34.98 Aligned_cols=36 Identities=19% Similarity=0.371 Sum_probs=25.7
Q ss_pred CCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCH
Q 021691 133 FRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNP 168 (309)
Q Consensus 133 ~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~ 168 (309)
..+.+||=+|||. |..........|.++++.+|.+.
T Consensus 39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ 75 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT 75 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 4567999999984 64444333446778999999774
No 438
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=67.61 E-value=54 Score=25.97 Aligned_cols=30 Identities=27% Similarity=0.359 Sum_probs=19.5
Q ss_pred eEEEeCCCC-Chh-hHHHHHhcCCcEEEEEcCC
Q 021691 137 RVIELGSGY-GLA-GLVIAATTEALEVVISDGN 167 (309)
Q Consensus 137 ~VLELG~Gt-G~~-~l~la~~~~~~~V~~tD~~ 167 (309)
+|+=+|||. |.. ...|+ +.|..+++.+|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~-~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLA-RSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHH-HCCCCEEEEEcCC
Confidence 467789873 533 33333 3567799999976
No 439
>PRK07062 short chain dehydrogenase; Provisional
Probab=67.46 E-value=85 Score=27.36 Aligned_cols=82 Identities=11% Similarity=0.127 Sum_probs=48.0
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-------
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP------- 203 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~------- 203 (309)
..|+++|=.|++.| +|..+++.+ .+.+|++++.+++-++.+.+.+..... ..++.....|..+.+.-
T Consensus 6 l~~k~~lItGas~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~ 81 (265)
T PRK07062 6 LEGRVAVVTGGSSG-IGLATVELLLEAGASVAICGRDEERLASAEARLREKFP---GARLLAARCDVLDEADVAAFAAAV 81 (265)
T ss_pred cCCCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCC---CceEEEEEecCCCHHHHHHHHHHH
Confidence 46889999997655 344444432 256899999998777666555443211 12455555555543210
Q ss_pred -CCCCCccEEEEcCCC
Q 021691 204 -YIVDTFDVIVASDCT 218 (309)
Q Consensus 204 -~~~~~fDvIi~~d~l 218 (309)
...+..|+++.+-..
T Consensus 82 ~~~~g~id~li~~Ag~ 97 (265)
T PRK07062 82 EARFGGVDMLVNNAGQ 97 (265)
T ss_pred HHhcCCCCEEEECCCC
Confidence 112568998876543
No 440
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=67.35 E-value=16 Score=33.39 Aligned_cols=78 Identities=21% Similarity=0.220 Sum_probs=52.5
Q ss_pred CcCCCCeEEEeCCCCCh---hhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC-----
Q 021691 131 DMFRSKRVIELGSGYGL---AGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF----- 202 (309)
Q Consensus 131 ~~~~g~~VLELG~GtG~---~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~----- 202 (309)
..+.|+.||==|+|.|+ .++.+|++ +++++..|++++..+...+.++.+| .+..-..|..+.+.
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa~r--g~~~vl~Din~~~~~etv~~~~~~g------~~~~y~cdis~~eei~~~a 105 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFAKR--GAKLVLWDINKQGNEETVKEIRKIG------EAKAYTCDISDREEIYRLA 105 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHHHh--CCeEEEEeccccchHHHHHHHHhcC------ceeEEEecCCCHHHHHHHH
Confidence 45688999999999884 45666665 5589999999988888877777664 23343444433221
Q ss_pred ---CCCCCCccEEEEcC
Q 021691 203 ---PYIVDTFDVIVASD 216 (309)
Q Consensus 203 ---~~~~~~fDvIi~~d 216 (309)
...-+..|+++.+-
T Consensus 106 ~~Vk~e~G~V~ILVNNA 122 (300)
T KOG1201|consen 106 KKVKKEVGDVDILVNNA 122 (300)
T ss_pred HHHHHhcCCceEEEecc
Confidence 11235788888855
No 441
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=67.16 E-value=3.3 Score=36.68 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=27.5
Q ss_pred CCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHH
Q 021691 134 RSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYI 174 (309)
Q Consensus 134 ~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~ 174 (309)
.+.+|+=+|||. |........+.|..+++.+|.+.--..++
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL 64 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNL 64 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCc
Confidence 467899999984 65444334446788999999765444333
No 442
>PRK07109 short chain dehydrogenase; Provisional
Probab=67.05 E-value=87 Score=28.84 Aligned_cols=79 Identities=14% Similarity=0.172 Sum_probs=47.3
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-------
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP------- 203 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~------- 203 (309)
..+++||=.|++.| +|..+++.+ .+.+|++++.+++.++.+.+.+...+. ++.....|..+...-
T Consensus 6 l~~k~vlITGas~g-IG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~-----~~~~v~~Dv~d~~~v~~~~~~~ 79 (334)
T PRK07109 6 IGRQVVVITGASAG-VGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGG-----EALAVVADVADAEAVQAAADRA 79 (334)
T ss_pred CCCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-----cEEEEEecCCCHHHHHHHHHHH
Confidence 45788888887544 444444332 256899999998887777666654332 344555555433210
Q ss_pred -CCCCCccEEEEcCC
Q 021691 204 -YIVDTFDVIVASDC 217 (309)
Q Consensus 204 -~~~~~fDvIi~~d~ 217 (309)
..-+++|++|.+-.
T Consensus 80 ~~~~g~iD~lInnAg 94 (334)
T PRK07109 80 EEELGPIDTWVNNAM 94 (334)
T ss_pred HHHCCCCCEEEECCC
Confidence 01246899887654
No 443
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=67.02 E-value=45 Score=36.04 Aligned_cols=124 Identities=10% Similarity=0.134 Sum_probs=62.6
Q ss_pred CCCeEEEeCCC-CChhhH-HHHHhcCCc-------------EEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC
Q 021691 134 RSKRVIELGSG-YGLAGL-VIAATTEAL-------------EVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN 198 (309)
Q Consensus 134 ~g~~VLELG~G-tG~~~l-~la~~~~~~-------------~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~ 198 (309)
+.++|+=|||| .|..-. .++. .+.. .|+..|.+++..+.+.+.. ..+.+..+|..
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~-~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~---------~~~~~v~lDv~ 637 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLAS-VKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI---------ENAEAVQLDVS 637 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHh-CcCccccccccccccccEEEEECCCHHHHHHHHHhc---------CCCceEEeecC
Confidence 46799999998 354433 3333 2333 3888999876655444332 12334455543
Q ss_pred CCC-CCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEeccCc
Q 021691 199 QDD-FPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYNA 276 (309)
Q Consensus 199 ~~~-~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~~~~ 276 (309)
+.+ ....-...|+|+++-+.+.. . ..+...++.+- -++....-......+.+.++++|..+-.--.+++
T Consensus 638 D~e~L~~~v~~~DaVIsalP~~~H---~---~VAkaAieaGk---Hvv~eky~~~e~~~L~e~Ak~AGV~~m~e~GlDP 707 (1042)
T PLN02819 638 DSESLLKYVSQVDVVISLLPASCH---A---VVAKACIELKK---HLVTASYVSEEMSALDSKAKEAGITILCEMGLDP 707 (1042)
T ss_pred CHHHHHHhhcCCCEEEECCCchhh---H---HHHHHHHHcCC---CEEECcCCHHHHHHHHHHHHHcCCEEEECCccCH
Confidence 321 11111358999997655332 2 22333333332 2222222333445666777777766533222444
No 444
>PRK06139 short chain dehydrogenase; Provisional
Probab=66.66 E-value=72 Score=29.45 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=48.7
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-------
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP------- 203 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~------- 203 (309)
..+++||=.|++.| +|..+++.+ .+.+|++++.+++.++.+.+.+...+. .+.+...|..+.+.-
T Consensus 5 l~~k~vlITGAs~G-IG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~-----~~~~~~~Dv~d~~~v~~~~~~~ 78 (330)
T PRK06139 5 LHGAVVVITGASSG-IGQATAEAFARRGARLVLAARDEEALQAVAEECRALGA-----EVLVVPTDVTDADQVKALATQA 78 (330)
T ss_pred CCCCEEEEcCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----cEEEEEeeCCCHHHHHHHHHHH
Confidence 45788998888554 344433322 256899999999888877776665432 345555665543210
Q ss_pred -CCCCCccEEEEcCC
Q 021691 204 -YIVDTFDVIVASDC 217 (309)
Q Consensus 204 -~~~~~fDvIi~~d~ 217 (309)
...+.+|++|.+--
T Consensus 79 ~~~~g~iD~lVnnAG 93 (330)
T PRK06139 79 ASFGGRIDVWVNNVG 93 (330)
T ss_pred HHhcCCCCEEEECCC
Confidence 01256899988653
No 445
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=66.64 E-value=86 Score=27.12 Aligned_cols=80 Identities=14% Similarity=0.245 Sum_probs=46.6
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-------
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP------- 203 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~------- 203 (309)
..++++|=.|++.| +|..+++.+ .+.+|+++|.++..++.+...+...+ ..+.....|..+...-
T Consensus 7 l~~k~~lItGas~g-iG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~ 80 (254)
T PRK08085 7 LAGKNILITGSAQG-IGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEG-----IKAHAAPFNVTHKQEVEAAIEHI 80 (254)
T ss_pred CCCCEEEEECCCCh-HHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcC-----CeEEEEecCCCCHHHHHHHHHHH
Confidence 36788999886654 444444432 24699999998877666655554322 1344445555433210
Q ss_pred -CCCCCccEEEEcCCC
Q 021691 204 -YIVDTFDVIVASDCT 218 (309)
Q Consensus 204 -~~~~~fDvIi~~d~l 218 (309)
...+.+|+|+.+-..
T Consensus 81 ~~~~~~id~vi~~ag~ 96 (254)
T PRK08085 81 EKDIGPIDVLINNAGI 96 (254)
T ss_pred HHhcCCCCEEEECCCc
Confidence 112468999886643
No 446
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=66.44 E-value=24 Score=32.97 Aligned_cols=45 Identities=24% Similarity=0.293 Sum_probs=33.9
Q ss_pred CcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHH
Q 021691 131 DMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQ 175 (309)
Q Consensus 131 ~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~ 175 (309)
...+|.+||=.|+|. |...+.+|+..|..+|+++|.+++-.+.++
T Consensus 173 ~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~ 218 (375)
T cd08282 173 GVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAE 218 (375)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 455788888888874 777777788777668999998887766655
No 447
>PRK12829 short chain dehydrogenase; Provisional
Probab=66.36 E-value=75 Score=27.51 Aligned_cols=78 Identities=15% Similarity=0.123 Sum_probs=44.7
Q ss_pred cCCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC------
Q 021691 132 MFRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP------ 203 (309)
Q Consensus 132 ~~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~------ 203 (309)
..++++||=.|++ |.+|..+++.+ .+.+|++++.+++.++.+...... .++.....|..+...-
T Consensus 8 ~~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~D~~~~~~~~~~~~~ 79 (264)
T PRK12829 8 PLDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPG-------AKVTATVADVADPAQVERVFDT 79 (264)
T ss_pred ccCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-------CceEEEEccCCCHHHHHHHHHH
Confidence 3578999998886 44455444432 246899999988766655433221 1344455555433210
Q ss_pred --CCCCCccEEEEcCC
Q 021691 204 --YIVDTFDVIVASDC 217 (309)
Q Consensus 204 --~~~~~fDvIi~~d~ 217 (309)
...+++|+|+.+-.
T Consensus 80 ~~~~~~~~d~vi~~ag 95 (264)
T PRK12829 80 AVERFGGLDVLVNNAG 95 (264)
T ss_pred HHHHhCCCCEEEECCC
Confidence 01146899987554
No 448
>PRK08267 short chain dehydrogenase; Provisional
Probab=66.24 E-value=59 Score=28.28 Aligned_cols=74 Identities=15% Similarity=0.035 Sum_probs=42.9
Q ss_pred CeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC---------C
Q 021691 136 KRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP---------Y 204 (309)
Q Consensus 136 ~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~---------~ 204 (309)
++||=.|++. .+|..+++.+ .+.+|++++.+++.++.+...+. + ..+.+...|..+...- .
T Consensus 2 k~vlItGasg-~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~-----~~~~~~~~D~~~~~~v~~~~~~~~~~ 73 (260)
T PRK08267 2 KSIFITGAAS-GIGRATALLFAAEGWRVGAYDINEAGLAALAAELG--A-----GNAWTGALDVTDRAAWDAALADFAAA 73 (260)
T ss_pred cEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc--C-----CceEEEEecCCCHHHHHHHHHHHHHH
Confidence 5677777754 4444444432 25689999998887776655433 1 2355556665543210 0
Q ss_pred CCCCccEEEEcCC
Q 021691 205 IVDTFDVIVASDC 217 (309)
Q Consensus 205 ~~~~fDvIi~~d~ 217 (309)
..+++|+|+.+-.
T Consensus 74 ~~~~id~vi~~ag 86 (260)
T PRK08267 74 TGGRLDVLFNNAG 86 (260)
T ss_pred cCCCCCEEEECCC
Confidence 1356899887553
No 449
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=65.96 E-value=86 Score=26.87 Aligned_cols=78 Identities=19% Similarity=0.261 Sum_probs=44.7
Q ss_pred CCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC--------
Q 021691 134 RSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP-------- 203 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~-------- 203 (309)
++++||=.|++ |.+|..+++.+ .+.+|++++.+....+.+...+...+ .++.....|..+....
T Consensus 2 ~~~~ilItGas-~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~~~~ 75 (250)
T TIGR03206 2 KDKTAIVTGGG-GGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKG-----GNAQAFACDITDRDSVDTAVAAAE 75 (250)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC-----CcEEEEEcCCCCHHHHHHHHHHHH
Confidence 47788888864 45555555432 24689999998877666655554332 2344555554432110
Q ss_pred CCCCCccEEEEcCC
Q 021691 204 YIVDTFDVIVASDC 217 (309)
Q Consensus 204 ~~~~~fDvIi~~d~ 217 (309)
...++.|+|+.+..
T Consensus 76 ~~~~~~d~vi~~ag 89 (250)
T TIGR03206 76 QALGPVDVLVNNAG 89 (250)
T ss_pred HHcCCCCEEEECCC
Confidence 01135797777553
No 450
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=65.79 E-value=13 Score=34.46 Aligned_cols=43 Identities=16% Similarity=0.150 Sum_probs=33.2
Q ss_pred CcCCCCeEEEeCCC-CChhhHHHHHhcCCcEEEEEcCCHHHHHHH
Q 021691 131 DMFRSKRVIELGSG-YGLAGLVIAATTEALEVVISDGNPQVVDYI 174 (309)
Q Consensus 131 ~~~~g~~VLELG~G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~ 174 (309)
...+|++|-=.|.| -|.+++..|+..+ .+|+++|.+..--+.+
T Consensus 178 g~~pG~~vgI~GlGGLGh~aVq~AKAMG-~rV~vis~~~~kkeea 221 (360)
T KOG0023|consen 178 GLGPGKWVGIVGLGGLGHMAVQYAKAMG-MRVTVISTSSKKKEEA 221 (360)
T ss_pred CCCCCcEEEEecCcccchHHHHHHHHhC-cEEEEEeCCchhHHHH
Confidence 45589999888987 5999999999874 6999999876433333
No 451
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=65.70 E-value=1.1e+02 Score=28.18 Aligned_cols=101 Identities=15% Similarity=0.133 Sum_probs=57.3
Q ss_pred cCcCCCCeEEEeCC--CCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCC-CC
Q 021691 130 ADMFRSKRVIELGS--GYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPY-IV 206 (309)
Q Consensus 130 ~~~~~g~~VLELG~--GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~-~~ 206 (309)
..+.+|.+||=.|+ |.|.+.+.+|+..++ .++++-.+++-.+.+++ .+.+ .-+....-+|.+.-... ..
T Consensus 138 ~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~----lGAd---~vi~y~~~~~~~~v~~~t~g 209 (326)
T COG0604 138 AGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKE----LGAD---HVINYREEDFVEQVRELTGG 209 (326)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHh----cCCC---EEEcCCcccHHHHHHHHcCC
Confidence 45567999999985 357888999999877 66666666654444433 2321 11111122222211111 12
Q ss_pred CCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 207 DTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 207 ~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
..+|+|+-. .-...+......|+++| .++.+.
T Consensus 210 ~gvDvv~D~-------vG~~~~~~~l~~l~~~G--~lv~ig 241 (326)
T COG0604 210 KGVDVVLDT-------VGGDTFAASLAALAPGG--RLVSIG 241 (326)
T ss_pred CCceEEEEC-------CCHHHHHHHHHHhccCC--EEEEEe
Confidence 469999863 12445566777888888 444443
No 452
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=65.55 E-value=93 Score=27.16 Aligned_cols=80 Identities=20% Similarity=0.265 Sum_probs=47.9
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-------
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP------- 203 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~------- 203 (309)
..++++|=.|++.|+ |..+++.+ .+.+|+.++.+++.++.+...+...+ .++.....|..+...-
T Consensus 8 ~~~k~~lItGa~~~i-G~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~ 81 (265)
T PRK07097 8 LKGKIALITGASYGI-GFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG-----IEAHGYVCDVTDEDGVQAMVSQI 81 (265)
T ss_pred CCCCEEEEeCCCchH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC-----CceEEEEcCCCCHHHHHHHHHHH
Confidence 467899999987654 33333322 25689999998877776666655432 2345555655433210
Q ss_pred -CCCCCccEEEEcCCC
Q 021691 204 -YIVDTFDVIVASDCT 218 (309)
Q Consensus 204 -~~~~~fDvIi~~d~l 218 (309)
...+++|+++.+-..
T Consensus 82 ~~~~~~id~li~~ag~ 97 (265)
T PRK07097 82 EKEVGVIDILVNNAGI 97 (265)
T ss_pred HHhCCCCCEEEECCCC
Confidence 012468999886644
No 453
>PRK06138 short chain dehydrogenase; Provisional
Probab=64.33 E-value=71 Score=27.43 Aligned_cols=79 Identities=16% Similarity=0.170 Sum_probs=45.1
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-------
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP------- 203 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~------- 203 (309)
.+++++|=.||.. .+|..+++.+ .+.+|++++.+++.++.....+. . ..++.....|..+...-
T Consensus 3 ~~~k~~lItG~sg-~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~-----~~~~~~~~~D~~~~~~~~~~~~~i 75 (252)
T PRK06138 3 LAGRVAIVTGAGS-GIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-A-----GGRAFARQGDVGSAEAVEALVDFV 75 (252)
T ss_pred CCCcEEEEeCCCc-hHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-c-----CCeEEEEEcCCCCHHHHHHHHHHH
Confidence 3578899888854 4444444322 24689999988776665554443 1 12355555555433210
Q ss_pred -CCCCCccEEEEcCCC
Q 021691 204 -YIVDTFDVIVASDCT 218 (309)
Q Consensus 204 -~~~~~fDvIi~~d~l 218 (309)
...+++|+|+.+...
T Consensus 76 ~~~~~~id~vi~~ag~ 91 (252)
T PRK06138 76 AARWGRLDVLVNNAGF 91 (252)
T ss_pred HHHcCCCCEEEECCCC
Confidence 011468998875543
No 454
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=64.16 E-value=12 Score=32.81 Aligned_cols=59 Identities=17% Similarity=0.186 Sum_probs=44.2
Q ss_pred HHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHh
Q 021691 121 VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDA 180 (309)
Q Consensus 121 ~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~ 180 (309)
.|.+-+..+.......-|.|+|.|.|..+..+.. .+..+...++.++..+.-++.-.+.
T Consensus 37 ~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~-a~~~RL~vVE~D~RFip~LQ~L~EA 95 (326)
T KOG0821|consen 37 RLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILN-ADVARLLVVEKDTRFIPGLQMLSEA 95 (326)
T ss_pred HHHHHHHHhccccccceeEEecCCCCchhHHHHh-cchhheeeeeeccccChHHHHHhhc
Confidence 3445555566666778999999999988887655 3567888999998888877765553
No 455
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=64.15 E-value=78 Score=27.37 Aligned_cols=80 Identities=15% Similarity=0.202 Sum_probs=45.2
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-------
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP------- 203 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~------- 203 (309)
..+++||=.|+. |.+|..+++.+ .+.+|++++.++...+.+.+.+...+ .++.....|..+...-
T Consensus 5 ~~~~~vlItGas-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~ 78 (262)
T PRK13394 5 LNGKTAVVTGAA-SGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAG-----GKAIGVAMDVTNEDAVNAGIDKV 78 (262)
T ss_pred CCCCEEEEECCC-ChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcC-----ceEEEEECCCCCHHHHHHHHHHH
Confidence 357889977664 44444444332 24589999999877766665554332 2344445554432210
Q ss_pred -CCCCCccEEEEcCCC
Q 021691 204 -YIVDTFDVIVASDCT 218 (309)
Q Consensus 204 -~~~~~fDvIi~~d~l 218 (309)
...++.|+|+.+...
T Consensus 79 ~~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 79 AERFGSVDILVSNAGI 94 (262)
T ss_pred HHHcCCCCEEEECCcc
Confidence 012458988886644
No 456
>PRK07411 hypothetical protein; Validated
Probab=63.55 E-value=3.8 Score=39.04 Aligned_cols=42 Identities=26% Similarity=0.259 Sum_probs=28.0
Q ss_pred CCCeEEEeCCCC-Chh-hHHHHHhcCCcEEEEEcCCHHHHHHHHH
Q 021691 134 RSKRVIELGSGY-GLA-GLVIAATTEALEVVISDGNPQVVDYIQR 176 (309)
Q Consensus 134 ~g~~VLELG~Gt-G~~-~l~la~~~~~~~V~~tD~~~~~l~~~~~ 176 (309)
...+||=+|||. |.. +..|+. .|-++++.+|.+.--+.++.+
T Consensus 37 ~~~~VlivG~GGlG~~va~~La~-~Gvg~l~lvD~D~ve~sNL~R 80 (390)
T PRK07411 37 KAASVLCIGTGGLGSPLLLYLAA-AGIGRIGIVDFDVVDSSNLQR 80 (390)
T ss_pred hcCcEEEECCCHHHHHHHHHHHH-cCCCEEEEECCCEecccccCc
Confidence 467999999984 543 444444 577899999976544444433
No 457
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=63.25 E-value=98 Score=27.71 Aligned_cols=91 Identities=16% Similarity=0.188 Sum_probs=48.3
Q ss_pred eEEEeCCCC-C-hhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEE
Q 021691 137 RVIELGSGY-G-LAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVA 214 (309)
Q Consensus 137 ~VLELG~Gt-G-~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~ 214 (309)
+|+=+|+|. | .++..+++. +.+|+++|.+++.++.+++ ++.......... ..... .+... ...+|+|+.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~----~g~~~~~~~~~~-~~~~~-~~~~~-~~~~d~vil 72 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA--GHDVTLVARRGAHLDALNE----NGLRLEDGEITV-PVLAA-DDPAE-LGPQDLVIL 72 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC--CCeEEEEECChHHHHHHHH----cCCcccCCceee-cccCC-CChhH-cCCCCEEEE
Confidence 577788874 3 344444443 4689999987776665543 233210011110 00000 11111 257899988
Q ss_pred cCCCCCcccHHHHHHHHHHHHhcCC
Q 021691 215 SDCTFFKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 215 ~d~ly~~~~~~~ll~~l~~lLk~~G 239 (309)
+-..+ ....+++.+...+.++.
T Consensus 73 a~k~~---~~~~~~~~l~~~l~~~~ 94 (304)
T PRK06522 73 AVKAY---QLPAALPSLAPLLGPDT 94 (304)
T ss_pred ecccc---cHHHHHHHHhhhcCCCC
Confidence 65433 35667777777775543
No 458
>PRK05650 short chain dehydrogenase; Provisional
Probab=63.23 E-value=96 Score=27.16 Aligned_cols=75 Identities=19% Similarity=0.069 Sum_probs=42.2
Q ss_pred eEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC--------CCC
Q 021691 137 RVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP--------YIV 206 (309)
Q Consensus 137 ~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~--------~~~ 206 (309)
+||=.|+ +|.+|..+++.+ .+.+|++++.+++-++.+...+...+. ++.....|..+...- ...
T Consensus 2 ~vlVtGa-sggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~D~~~~~~~~~~~~~i~~~~ 75 (270)
T PRK05650 2 RVMITGA-ASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGG-----DGFYQRCDVRDYSQLTALAQACEEKW 75 (270)
T ss_pred EEEEecC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-----ceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 5776676 444455544432 256899999988766665555544322 345555555432210 012
Q ss_pred CCccEEEEcCC
Q 021691 207 DTFDVIVASDC 217 (309)
Q Consensus 207 ~~fDvIi~~d~ 217 (309)
+.+|++|.+-.
T Consensus 76 ~~id~lI~~ag 86 (270)
T PRK05650 76 GGIDVIVNNAG 86 (270)
T ss_pred CCCCEEEECCC
Confidence 46899888654
No 459
>PLN00203 glutamyl-tRNA reductase
Probab=63.12 E-value=47 Score=32.98 Aligned_cols=45 Identities=18% Similarity=0.275 Sum_probs=30.9
Q ss_pred CCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHH
Q 021691 133 FRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRN 177 (309)
Q Consensus 133 ~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n 177 (309)
..+++|+=+|+|. |...+..+...|..+|++++.+++-.+.+...
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~ 309 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREE 309 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Confidence 4578999999984 54444333334556899999998776665543
No 460
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=62.72 E-value=8 Score=30.96 Aligned_cols=107 Identities=14% Similarity=0.146 Sum_probs=52.1
Q ss_pred EEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCC----CceEEEEeeCCCCCCCCCCCCccEE
Q 021691 139 IELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGG----TTVKSMTLHWNQDDFPYIVDTFDVI 212 (309)
Q Consensus 139 LELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~----~~v~~~~l~w~~~~~~~~~~~fDvI 212 (309)
+=+|+| .+|..+|..+ .+.+|++++..+ -++.++ .+++.... ..+.....-+.. ......+|+|
T Consensus 2 ~I~G~G--aiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~D~v 71 (151)
T PF02558_consen 2 LIIGAG--AIGSLYAARLAQAGHDVTLVSRSP-RLEAIK----EQGLTITGPDGDETVQPPIVISAP---SADAGPYDLV 71 (151)
T ss_dssp EEESTS--HHHHHHHHHHHHTTCEEEEEESHH-HHHHHH----HHCEEEEETTEEEEEEEEEEESSH---GHHHSTESEE
T ss_pred EEECcC--HHHHHHHHHHHHCCCceEEEEccc-cHHhhh----heeEEEEecccceecccccccCcc---hhccCCCcEE
Confidence 335555 3444444333 467899999766 444433 33432111 111111111111 1124679999
Q ss_pred EEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHH
Q 021691 213 VASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEI 261 (309)
Q Consensus 213 i~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~ 261 (309)
+.+-=- ...+..++.++..+.++. .+++ ....-...+.+.+.+
T Consensus 72 iv~vKa---~~~~~~l~~l~~~~~~~t--~iv~-~qNG~g~~~~l~~~~ 114 (151)
T PF02558_consen 72 IVAVKA---YQLEQALQSLKPYLDPNT--TIVS-LQNGMGNEEVLAEYF 114 (151)
T ss_dssp EE-SSG---GGHHHHHHHHCTGEETTE--EEEE-ESSSSSHHHHHHCHS
T ss_pred EEEecc---cchHHHHHHHhhccCCCc--EEEE-EeCCCCcHHHHHHHc
Confidence 986322 234667777888887764 3333 333333344444444
No 461
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=62.66 E-value=65 Score=32.60 Aligned_cols=66 Identities=18% Similarity=0.253 Sum_probs=37.9
Q ss_pred eEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC--CCCCCCccEE
Q 021691 137 RVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF--PYIVDTFDVI 212 (309)
Q Consensus 137 ~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~--~~~~~~fDvI 212 (309)
+|+=+ |.|.+|..+++.+ .+.+|+++|.|++.++.+++ .+. .+...|-.+.+. ...-.+.|.+
T Consensus 402 ~vII~--G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g~-------~v~~GDat~~~~L~~agi~~A~~v 468 (601)
T PRK03659 402 QVIIV--GFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK----YGY-------KVYYGDATQLELLRAAGAEKAEAI 468 (601)
T ss_pred CEEEe--cCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----CCC-------eEEEeeCCCHHHHHhcCCccCCEE
Confidence 45544 5555666555543 24689999999998888764 222 233344333221 1123568888
Q ss_pred EEc
Q 021691 213 VAS 215 (309)
Q Consensus 213 i~~ 215 (309)
+++
T Consensus 469 v~~ 471 (601)
T PRK03659 469 VIT 471 (601)
T ss_pred EEE
Confidence 874
No 462
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=62.02 E-value=5.3 Score=38.08 Aligned_cols=42 Identities=24% Similarity=0.257 Sum_probs=27.7
Q ss_pred CCCeEEEeCCCC-Chh-hHHHHHhcCCcEEEEEcCCHHHHHHHHH
Q 021691 134 RSKRVIELGSGY-GLA-GLVIAATTEALEVVISDGNPQVVDYIQR 176 (309)
Q Consensus 134 ~g~~VLELG~Gt-G~~-~l~la~~~~~~~V~~tD~~~~~l~~~~~ 176 (309)
.+.+||=+|||. |.. ...|+ ..|-++++.+|.+.--..++.+
T Consensus 41 ~~~~VlviG~GGlGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~R 84 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYLA-AAGVGTLGIVEFDVVDESNLQR 84 (392)
T ss_pred hcCCEEEECCCHHHHHHHHHHH-HcCCCeEEEECCCEecCccccc
Confidence 567999999984 543 34444 4577899999976543444433
No 463
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=61.93 E-value=1.2e+02 Score=27.28 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=26.9
Q ss_pred cCCCCeEEEeCCC-CChhhHHHHHhcCCcEEEEEcCCHHH
Q 021691 132 MFRSKRVIELGSG-YGLAGLVIAATTEALEVVISDGNPQV 170 (309)
Q Consensus 132 ~~~g~~VLELG~G-tG~~~l~la~~~~~~~V~~tD~~~~~ 170 (309)
...+.+|+=+||| .|........+.|-.+++.+|.+.-.
T Consensus 27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~ 66 (268)
T PRK15116 27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVC 66 (268)
T ss_pred HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEec
Confidence 3467899999998 46544443444566899999976433
No 464
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=61.84 E-value=20 Score=32.75 Aligned_cols=60 Identities=17% Similarity=0.180 Sum_probs=39.6
Q ss_pred ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHh
Q 021691 115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDA 180 (309)
Q Consensus 115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~ 180 (309)
+|+-..+=.+-+ ++-.|.+|.-+|+|...+--++++. +.+|.++|+|+.-|..-+-++..
T Consensus 48 iwEDp~Vdmeam----~~g~ghrivtigSGGcn~L~ylsr~--Pa~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 48 IWEDPSVDMEAM----QLGIGHRIVTIGSGGCNMLAYLSRA--PARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred ccCCccccHHHH----hcCCCcEEEEecCCcchHHHHhhcC--CceeEEEeCCHHHHHHHHHHHHH
Confidence 566554433323 2335789999999976443344553 57999999999888766655554
No 465
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=61.73 E-value=21 Score=33.18 Aligned_cols=97 Identities=12% Similarity=0.112 Sum_probs=59.1
Q ss_pred CcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC-----CC
Q 021691 131 DMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF-----PY 204 (309)
Q Consensus 131 ~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~-----~~ 204 (309)
...+|++||=.|+|. |...+.+|+..|...|+++|.+++-.+.+++. +.. . + ++...... ..
T Consensus 183 ~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~----g~~----~--~--i~~~~~~~~~~v~~~ 250 (365)
T cd08278 183 KPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL----GAT----H--V--INPKEEDLVAAIREI 250 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCc----E--E--ecCCCcCHHHHHHHH
Confidence 455788999998874 77777788888777899999988766655431 211 0 0 11111000 00
Q ss_pred CCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 205 IVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 205 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
....+|+|+-+ .- ....+..+.+.++++| .++.+.
T Consensus 251 ~~~~~d~vld~--~g----~~~~~~~~~~~l~~~G--~~v~~g 285 (365)
T cd08278 251 TGGGVDYALDT--TG----VPAVIEQAVDALAPRG--TLALVG 285 (365)
T ss_pred hCCCCcEEEEC--CC----CcHHHHHHHHHhccCC--EEEEeC
Confidence 12468988863 11 1345677788888888 555554
No 466
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=61.61 E-value=51 Score=29.94 Aligned_cols=114 Identities=15% Similarity=0.150 Sum_probs=58.7
Q ss_pred cCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691 132 MFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD 210 (309)
Q Consensus 132 ~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD 210 (309)
...|++|+=+|+|. |..-...++..+ .+|+..|.+++..+.+. ..+. .. ..+. +.......+|
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G-~~V~v~~R~~~~~~~~~----~~g~-------~~--~~~~--~l~~~l~~aD 211 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALG-ARVFVGARSSADLARIT----EMGL-------IP--FPLN--KLEEKVAEID 211 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHH----HCCC-------ee--ecHH--HHHHHhccCC
Confidence 45789999999984 433222233344 59999999886543332 1121 11 1111 1111224689
Q ss_pred EEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEe
Q 021691 211 VIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIE 272 (309)
Q Consensus 211 vIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~ 272 (309)
+|+.+-+... +-......++++. .++-.+.....+ .| +.+++.|.+.....
T Consensus 212 iVint~P~~i------i~~~~l~~~k~~a--liIDlas~Pg~t--df-~~Ak~~G~~a~~~~ 262 (287)
T TIGR02853 212 IVINTIPALV------LTADVLSKLPKHA--VIIDLASKPGGT--DF-EYAKKRGIKALLAP 262 (287)
T ss_pred EEEECCChHH------hCHHHHhcCCCCe--EEEEeCcCCCCC--CH-HHHHHCCCEEEEeC
Confidence 9998543221 1122334455543 222223322222 35 78899998876544
No 467
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=61.48 E-value=20 Score=33.84 Aligned_cols=73 Identities=23% Similarity=0.442 Sum_probs=38.9
Q ss_pred EEEeCCCCChhhHHHHHh---cCCc-EEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC-CCCCCCccEE
Q 021691 138 VIELGSGYGLAGLVIAAT---TEAL-EVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF-PYIVDTFDVI 212 (309)
Q Consensus 138 VLELG~GtG~~~l~la~~---~~~~-~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~-~~~~~~fDvI 212 (309)
|+=||+| .+|..+++. .+.. +|++.|.+.+-++.+...+ + ..++....+|..+.+. ...-...|+|
T Consensus 1 IlvlG~G--~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~--~-----~~~~~~~~~d~~~~~~l~~~~~~~dvV 71 (386)
T PF03435_consen 1 ILVLGAG--RVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL--L-----GDRVEAVQVDVNDPESLAELLRGCDVV 71 (386)
T ss_dssp EEEE--S--HHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT----T-----TTTEEEEE--TTTHHHHHHHHTTSSEE
T ss_pred CEEEcCc--HHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc--c-----ccceeEEEEecCCHHHHHHHHhcCCEE
Confidence 5668884 444443332 2333 8999999988776665443 1 2467777887764431 1122456999
Q ss_pred EEcCCCC
Q 021691 213 VASDCTF 219 (309)
Q Consensus 213 i~~d~ly 219 (309)
|.+-..+
T Consensus 72 in~~gp~ 78 (386)
T PF03435_consen 72 INCAGPF 78 (386)
T ss_dssp EE-SSGG
T ss_pred EECCccc
Confidence 9765444
No 468
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=61.47 E-value=15 Score=31.46 Aligned_cols=47 Identities=21% Similarity=0.205 Sum_probs=33.3
Q ss_pred CcCCCCeEEEeCCC-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHH
Q 021691 131 DMFRSKRVIELGSG-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVD 179 (309)
Q Consensus 131 ~~~~g~~VLELG~G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~ 179 (309)
....+++||=+|+- +|...-.+... +.+|+.+|++|.|-..+..|++
T Consensus 41 ~~~E~~~vli~G~YltG~~~a~~Ls~--~~~vtv~Di~p~~r~~lp~~v~ 88 (254)
T COG4017 41 EGEEFKEVLIFGVYLTGNYTAQMLSK--ADKVTVVDIHPFMRGFLPNNVK 88 (254)
T ss_pred cccCcceEEEEEeeehhHHHHHHhcc--cceEEEecCCHHHHhcCCCCcc
Confidence 44578999999997 67553332222 6799999999988766665554
No 469
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=60.86 E-value=19 Score=30.22 Aligned_cols=92 Identities=15% Similarity=0.219 Sum_probs=51.2
Q ss_pred EEEeCCCC-C-hhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccC------CCC-------CCceEEEEeeCCCCCC
Q 021691 138 VIELGSGY-G-LAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSG------AFG-------GTTVKSMTLHWNQDDF 202 (309)
Q Consensus 138 VLELG~Gt-G-~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~------~~~-------~~~v~~~~l~w~~~~~ 202 (309)
|.=+|+|+ | ..+..+|.. +.+|+..|.+++.++.+++.+..+-. ... ..++++ . .+.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-----~-~dl 73 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARA--GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-----T-TDL 73 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHT--TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-----E-SSG
T ss_pred EEEEcCCHHHHHHHHHHHhC--CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-----c-cCH
Confidence 55678886 4 233333443 78999999999999988887765210 000 012221 1 111
Q ss_pred CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691 203 PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 203 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G 239 (309)
.... ..|+|+=+ +.-..+....+++.+.+++.++-
T Consensus 74 ~~~~-~adlViEa-i~E~l~~K~~~~~~l~~~~~~~~ 108 (180)
T PF02737_consen 74 EEAV-DADLVIEA-IPEDLELKQELFAELDEICPPDT 108 (180)
T ss_dssp GGGC-TESEEEE--S-SSHHHHHHHHHHHHCCS-TTS
T ss_pred HHHh-hhheehhh-ccccHHHHHHHHHHHHHHhCCCc
Confidence 2222 67888874 44555666778888887776654
No 470
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=60.15 E-value=46 Score=32.82 Aligned_cols=50 Identities=12% Similarity=0.060 Sum_probs=37.5
Q ss_pred CCCeEEEeCCCCChhhHHHHHhc--C--CcEEEEEcCCHHHHHHHHHHHHhccC
Q 021691 134 RSKRVIELGSGYGLAGLVIAATT--E--ALEVVISDGNPQVVDYIQRNVDANSG 183 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~--~--~~~V~~tD~~~~~l~~~~~n~~~n~~ 183 (309)
++..|.|.-||+|.+-+...+.. + ...+++.+.++.+...++.|+..++.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~ 270 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI 270 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC
Confidence 56789999999987655433322 1 13589999999999999999877765
No 471
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=60.13 E-value=28 Score=31.71 Aligned_cols=108 Identities=14% Similarity=0.128 Sum_probs=66.3
Q ss_pred CCChhhHHHHHhc--CCcEEEEEcCCHHH-HHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCC
Q 021691 144 GYGLAGLVIAATT--EALEVVISDGNPQV-VDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFF 220 (309)
Q Consensus 144 GtG~~~l~la~~~--~~~~V~~tD~~~~~-l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~ 220 (309)
|.|..|..+|+++ .+..|++.|.+++. .+.++. .+.... ..........|+||. ++.+
T Consensus 7 GLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~----~Ga~~a-------------~s~~eaa~~aDvVit--mv~~ 67 (286)
T COG2084 7 GLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAA----AGATVA-------------ASPAEAAAEADVVIT--MLPD 67 (286)
T ss_pred cCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHH----cCCccc-------------CCHHHHHHhCCEEEE--ecCC
Confidence 5566666655543 24689999999876 444432 232100 000011245798888 3445
Q ss_pred cccHHHHH---HHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEe
Q 021691 221 KEFHKDLA---RIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIE 272 (309)
Q Consensus 221 ~~~~~~ll---~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~ 272 (309)
.......+ .-+..-++++. .+|-+++..+..-.++-+.+++.|+.+...+
T Consensus 68 ~~~V~~V~~g~~g~~~~~~~G~--i~IDmSTisp~~a~~~a~~~~~~G~~~lDAP 120 (286)
T COG2084 68 DAAVRAVLFGENGLLEGLKPGA--IVIDMSTISPETARELAAALAAKGLEFLDAP 120 (286)
T ss_pred HHHHHHHHhCccchhhcCCCCC--EEEECCCCCHHHHHHHHHHHHhcCCcEEecC
Confidence 55555554 23445566776 6677778888888999999999998875543
No 472
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=60.07 E-value=64 Score=31.11 Aligned_cols=117 Identities=15% Similarity=0.098 Sum_probs=55.3
Q ss_pred CeEEEeCCCCChhhHHHHHhc-CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCce-EEEEeeCCCCCCCCCCCCccEEE
Q 021691 136 KRVIELGSGYGLAGLVIAATT-EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTV-KSMTLHWNQDDFPYIVDTFDVIV 213 (309)
Q Consensus 136 ~~VLELG~GtG~~~l~la~~~-~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v-~~~~l~w~~~~~~~~~~~fDvIi 213 (309)
++|-=+|-| .+|+.+|..+ .+.+|++.|.+++.++.+++...-. ........ ....+...... ......|+|+
T Consensus 7 mkI~vIGlG--yvGlpmA~~la~~~~V~g~D~~~~~ve~l~~G~~~~-~e~~~~~l~~~g~l~~t~~~--~~~~~advvi 81 (425)
T PRK15182 7 VKIAIIGLG--YVGLPLAVEFGKSRQVVGFDVNKKRILELKNGVDVN-LETTEEELREARYLKFTSEI--EKIKECNFYI 81 (425)
T ss_pred CeEEEECcC--cchHHHHHHHhcCCEEEEEeCCHHHHHHHHCcCCCC-CCCCHHHHHhhCCeeEEeCH--HHHcCCCEEE
Confidence 456566655 4444433332 2368999999999988876221100 00000000 00000000000 0123568777
Q ss_pred EcCCCC-C---cccHHHHH---HHHHHHHhcCCCeEEEEEeecCCchHHHHHH
Q 021691 214 ASDCTF-F---KEFHKDLA---RIIKFLLKKVGPSEALFFSPKRGDSLDKFLE 259 (309)
Q Consensus 214 ~~d~ly-~---~~~~~~ll---~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~ 259 (309)
.+=+.- . ..+...+. +.+...++++. .++..++..+.+.++...
T Consensus 82 i~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~--lVI~~STv~pgtt~~~~~ 132 (425)
T PRK15182 82 ITVPTPINTYKQPDLTPLIKASETVGTVLNRGD--IVVYESTVYPGCTEEECV 132 (425)
T ss_pred EEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCC--EEEEecCCCCcchHHHHH
Confidence 533221 1 23344444 45666666655 566667777666665433
No 473
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=59.40 E-value=1.1e+02 Score=28.08 Aligned_cols=121 Identities=17% Similarity=0.187 Sum_probs=68.0
Q ss_pred CeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCC-CCCCceEEE----EeeCCCCCCC-CCCCCc
Q 021691 136 KRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGA-FGGTTVKSM----TLHWNQDDFP-YIVDTF 209 (309)
Q Consensus 136 ~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~-~~~~~v~~~----~l~w~~~~~~-~~~~~f 209 (309)
++|-=+|+|+=..|++.....++..|+..|.++++++.++..+..+--. .....+.-. .+..-..... ..-...
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~~~ 83 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALKDA 83 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhccC
Confidence 5778899997223333222235689999999999999888777665110 000111000 0000000000 012457
Q ss_pred cEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHH
Q 021691 210 DVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEI 261 (309)
Q Consensus 210 DvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~ 261 (309)
|+|+= .++-+.+.-..+++.+..+++|+- ++.+....-...++.+.+
T Consensus 84 DlVIE-Av~E~levK~~vf~~l~~~~~~~a----IlASNTSsl~it~ia~~~ 130 (307)
T COG1250 84 DLVIE-AVVEDLELKKQVFAELEALAKPDA----ILASNTSSLSITELAEAL 130 (307)
T ss_pred CEEEE-eccccHHHHHHHHHHHHhhcCCCc----EEeeccCCCCHHHHHHHh
Confidence 88887 466777778889999999998765 454443333334444444
No 474
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=59.22 E-value=1.7e+02 Score=28.04 Aligned_cols=72 Identities=17% Similarity=0.293 Sum_probs=38.8
Q ss_pred CCCeEEEeCCCCChhhHHHHHh--cCCcEEEEEcCCH-HHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691 134 RSKRVIELGSGYGLAGLVIAAT--TEALEVVISDGNP-QVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD 210 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~--~~~~~V~~tD~~~-~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD 210 (309)
.+++|+=+|+|. .|+.+|.. ..+.+|+++|.++ +.++.....+...+. .+...+... ...+.+|
T Consensus 4 ~~k~v~iiG~g~--~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~----~~~~~~d 70 (450)
T PRK14106 4 KGKKVLVVGAGV--SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGI-------ELVLGEYPE----EFLEGVD 70 (450)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCC-------EEEeCCcch----hHhhcCC
Confidence 578999999886 33333332 2367999999874 333333233333332 222222111 1234689
Q ss_pred EEEEcCCC
Q 021691 211 VIVASDCT 218 (309)
Q Consensus 211 vIi~~d~l 218 (309)
+|+.+.-+
T Consensus 71 ~vv~~~g~ 78 (450)
T PRK14106 71 LVVVSPGV 78 (450)
T ss_pred EEEECCCC
Confidence 88876543
No 475
>PLN02702 L-idonate 5-dehydrogenase
Probab=59.05 E-value=29 Score=32.22 Aligned_cols=104 Identities=15% Similarity=0.145 Sum_probs=59.8
Q ss_pred CcCcCCCCeEEEeCCC-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEE--EEeeCCCCC--C-
Q 021691 129 HADMFRSKRVIELGSG-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKS--MTLHWNQDD--F- 202 (309)
Q Consensus 129 ~~~~~~g~~VLELG~G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~--~~l~w~~~~--~- 202 (309)
.....+|.+||=+|+| .|..++.+|+..+...|+++|.++...+.++. .+.. ..+.. ..-+|...- .
T Consensus 176 ~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~ 248 (364)
T PLN02702 176 RANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQ----LGAD---EIVLVSTNIEDVESEVEEIQ 248 (364)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC---EEEecCcccccHHHHHHHHh
Confidence 3455678899999886 37777788888877779999988776665543 2221 00000 001111000 0
Q ss_pred CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 203 PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 203 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
......+|+|+-+ .-. ...+....++|+++| .++.+.
T Consensus 249 ~~~~~~~d~vid~--~g~----~~~~~~~~~~l~~~G--~~v~~g 285 (364)
T PLN02702 249 KAMGGGIDVSFDC--VGF----NKTMSTALEATRAGG--KVCLVG 285 (364)
T ss_pred hhcCCCCCEEEEC--CCC----HHHHHHHHHHHhcCC--EEEEEc
Confidence 0112468988763 111 235677788899998 455443
No 476
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=58.87 E-value=64 Score=29.09 Aligned_cols=111 Identities=11% Similarity=-0.030 Sum_probs=59.8
Q ss_pred CCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691 134 RSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI 212 (309)
Q Consensus 134 ~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI 212 (309)
.+++||=||+|- +.......+..+..+|+.++.+++-.+.+.+.+ +. .|.. .. ....+|+|
T Consensus 121 ~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~---~~------------~~~~-~~--~~~~~dlv 182 (272)
T PRK12550 121 PDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELY---GY------------EWRP-DL--GGIEADIL 182 (272)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHh---CC------------cchh-hc--ccccCCEE
Confidence 457899999984 444333334457778999999876444443321 11 1110 00 12348999
Q ss_pred EEcCCCCCcccH--HH-HHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeE
Q 021691 213 VASDCTFFKEFH--KD-LARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHF 268 (309)
Q Consensus 213 i~~d~ly~~~~~--~~-ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~ 268 (309)
|-+-++-..... +. -+. ...++++. ++++.......-.|++.+++.|.++
T Consensus 183 INaTp~Gm~~~~~~~~~pi~--~~~l~~~~----~v~D~vY~P~~T~ll~~A~~~G~~~ 235 (272)
T PRK12550 183 VNVTPIGMAGGPEADKLAFP--EAEIDAAS----VVFDVVALPAETPLIRYARARGKTV 235 (272)
T ss_pred EECCccccCCCCccccCCCC--HHHcCCCC----EEEEeecCCccCHHHHHHHHCcCeE
Confidence 988765432111 00 011 13455443 3333222122357999999999876
No 477
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=58.70 E-value=40 Score=30.77 Aligned_cols=115 Identities=15% Similarity=0.148 Sum_probs=64.9
Q ss_pred cCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691 132 MFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD 210 (309)
Q Consensus 132 ~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD 210 (309)
...+++|+=+|+|. |......++..++ +|+++|.++...+.++. .+. .... + ......-..+|
T Consensus 149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~----~G~-------~~~~--~--~~l~~~l~~aD 212 (296)
T PRK08306 149 TIHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITE----MGL-------SPFH--L--SELAEEVGKID 212 (296)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----cCC-------eeec--H--HHHHHHhCCCC
Confidence 34789999999984 6666565666654 99999999775544432 222 1111 1 11111224689
Q ss_pred EEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEec
Q 021691 211 VIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIEN 273 (309)
Q Consensus 211 vIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~ 273 (309)
+||.+-+. .-+-+.....+++++ .++-.......+ .| +.+++.|.+......
T Consensus 213 iVI~t~p~------~~i~~~~l~~~~~g~--vIIDla~~pggt--d~-~~a~~~Gv~~~~~~~ 264 (296)
T PRK08306 213 IIFNTIPA------LVLTKEVLSKMPPEA--LIIDLASKPGGT--DF-EYAEKRGIKALLAPG 264 (296)
T ss_pred EEEECCCh------hhhhHHHHHcCCCCc--EEEEEccCCCCc--Ce-eehhhCCeEEEEECC
Confidence 99985321 122344455677766 444344433332 24 567788877754443
No 478
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=58.69 E-value=39 Score=30.87 Aligned_cols=101 Identities=17% Similarity=0.124 Sum_probs=55.7
Q ss_pred CcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE-eeCCCCCCCCCCCC
Q 021691 131 DMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT-LHWNQDDFPYIVDT 208 (309)
Q Consensus 131 ~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~-l~w~~~~~~~~~~~ 208 (309)
...++.+||=.|+|. |...+.+|+..+ .+|++++.+++-.+.+++ . +.. .-+.... .++.........+.
T Consensus 162 ~~~~~~~vlV~g~g~vg~~~~~~a~~~G-~~vi~~~~~~~~~~~~~~-~---g~~---~~i~~~~~~~~~~~~~~~~~~~ 233 (345)
T cd08260 162 RVKPGEWVAVHGCGGVGLSAVMIASALG-ARVIAVDIDDDKLELARE-L---GAV---ATVNASEVEDVAAAVRDLTGGG 233 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEeCCHHHHHHHHH-h---CCC---EEEccccchhHHHHHHHHhCCC
Confidence 455788999999763 666666777664 589999988877776643 2 221 0011000 00000000011126
Q ss_pred ccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 209 FDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 209 fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
+|+|+.. +-. ...+....+.++++| .++.+.
T Consensus 234 ~d~vi~~--~g~----~~~~~~~~~~l~~~g--~~i~~g 264 (345)
T cd08260 234 AHVSVDA--LGI----PETCRNSVASLRKRG--RHVQVG 264 (345)
T ss_pred CCEEEEc--CCC----HHHHHHHHHHhhcCC--EEEEeC
Confidence 8998863 221 345666778888888 455443
No 479
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=58.64 E-value=34 Score=31.67 Aligned_cols=93 Identities=18% Similarity=0.151 Sum_probs=58.1
Q ss_pred CeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEE
Q 021691 136 KRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVA 214 (309)
Q Consensus 136 ~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~ 214 (309)
.+|.=||.|. |.-+--+|.-. +++|+..|.|.+-+.++..-.. .++....- ........-.+.|+||+
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f~--------~rv~~~~s--t~~~iee~v~~aDlvIg 237 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLFG--------GRVHTLYS--TPSNIEEAVKKADLVIG 237 (371)
T ss_pred ccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhhC--------ceeEEEEc--CHHHHHHHhhhccEEEE
Confidence 4677788885 76666655544 5699999999877666654321 12222111 11111122357899999
Q ss_pred cCCCCCcccHHHHHHHHHHHHhcCC
Q 021691 215 SDCTFFKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 215 ~d~ly~~~~~~~ll~~l~~lLk~~G 239 (309)
+=.+-....+....+.+.+.+|||+
T Consensus 238 aVLIpgakaPkLvt~e~vk~MkpGs 262 (371)
T COG0686 238 AVLIPGAKAPKLVTREMVKQMKPGS 262 (371)
T ss_pred EEEecCCCCceehhHHHHHhcCCCc
Confidence 7655555566666788888899988
No 480
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=58.54 E-value=73 Score=29.09 Aligned_cols=91 Identities=15% Similarity=0.099 Sum_probs=49.2
Q ss_pred CeEEEeCCCC--ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCC--CCceEEEEeeCCCCCCCCCCCCccE
Q 021691 136 KRVIELGSGY--GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFG--GTTVKSMTLHWNQDDFPYIVDTFDV 211 (309)
Q Consensus 136 ~~VLELG~Gt--G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~--~~~v~~~~l~w~~~~~~~~~~~fDv 211 (309)
++|+=+|+|. |.++..+++. +.+|+++..++ .+. +..+++... .............. ......||+
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~--g~~V~~~~r~~--~~~----~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~ 75 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARA--GFDVHFLLRSD--YEA----VRENGLQVDSVHGDFHLPPVQAYRS--AEDMPPCDW 75 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHC--CCeEEEEEeCC--HHH----HHhCCeEEEeCCCCeeecCceEEcc--hhhcCCCCE
Confidence 5788899885 4566666654 46888888765 222 333443210 01111110111111 112357999
Q ss_pred EEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691 212 IVASDCTFFKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 212 Ii~~d~ly~~~~~~~ll~~l~~lLk~~G 239 (309)
|+.+=-.|. ...+++.+..++++++
T Consensus 76 vilavK~~~---~~~~~~~l~~~~~~~~ 100 (313)
T PRK06249 76 VLVGLKTTA---NALLAPLIPQVAAPDA 100 (313)
T ss_pred EEEEecCCC---hHhHHHHHhhhcCCCC
Confidence 988644443 3467777888887776
No 481
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=58.46 E-value=26 Score=32.79 Aligned_cols=46 Identities=17% Similarity=0.196 Sum_probs=34.7
Q ss_pred cCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHH
Q 021691 130 ADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQ 175 (309)
Q Consensus 130 ~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~ 175 (309)
....+|.+||=.|+|. |...+.+|+..+..+|+++|.+++-++.++
T Consensus 186 ~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~ 232 (373)
T cd08299 186 AKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAK 232 (373)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 4556788999888864 777777778777668999998887766663
No 482
>PRK08324 short chain dehydrogenase; Validated
Probab=57.91 E-value=1.3e+02 Score=30.77 Aligned_cols=80 Identities=13% Similarity=0.118 Sum_probs=45.6
Q ss_pred cCCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC------
Q 021691 132 MFRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP------ 203 (309)
Q Consensus 132 ~~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~------ 203 (309)
...|++||=.|++. .+|..+++.+ .+.+|+++|.++.-++.+...+... ..+.....|..+...-
T Consensus 419 ~l~gk~vLVTGasg-gIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~------~~v~~v~~Dvtd~~~v~~~~~~ 491 (681)
T PRK08324 419 PLAGKVALVTGAAG-GIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP------DRALGVACDVTDEAAVQAAFEE 491 (681)
T ss_pred CCCCCEEEEecCCC-HHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc------CcEEEEEecCCCHHHHHHHHHH
Confidence 45788999888743 3444434332 2458999999987766655443321 2344555554432210
Q ss_pred --CCCCCccEEEEcCCC
Q 021691 204 --YIVDTFDVIVASDCT 218 (309)
Q Consensus 204 --~~~~~fDvIi~~d~l 218 (309)
...+.+|+|+.+-..
T Consensus 492 ~~~~~g~iDvvI~~AG~ 508 (681)
T PRK08324 492 AALAFGGVDIVVSNAGI 508 (681)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 012468999886543
No 483
>PRK06949 short chain dehydrogenase; Provisional
Probab=57.28 E-value=74 Score=27.49 Aligned_cols=79 Identities=14% Similarity=0.182 Sum_probs=47.1
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-------
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP------- 203 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~------- 203 (309)
..+++||=.|+ +|.+|..+++.+ .+.+|++++.+++.++.+...+...+ .++.+...|..+.+.-
T Consensus 7 ~~~k~ilItGa-sg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~D~~~~~~~~~~~~~~ 80 (258)
T PRK06949 7 LEGKVALVTGA-SSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG-----GAAHVVSLDVTDYQSIKAAVAHA 80 (258)
T ss_pred CCCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-----CcEEEEEecCCCHHHHHHHHHHH
Confidence 46789999885 455555555443 24589999999887776666554322 2345555555432110
Q ss_pred -CCCCCccEEEEcCC
Q 021691 204 -YIVDTFDVIVASDC 217 (309)
Q Consensus 204 -~~~~~fDvIi~~d~ 217 (309)
...+..|+|+.+..
T Consensus 81 ~~~~~~~d~li~~ag 95 (258)
T PRK06949 81 ETEAGTIDILVNNSG 95 (258)
T ss_pred HHhcCCCCEEEECCC
Confidence 01246799888654
No 484
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=57.15 E-value=60 Score=29.24 Aligned_cols=101 Identities=16% Similarity=0.094 Sum_probs=55.1
Q ss_pred CcCCCCeEEEeCC-C-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCC
Q 021691 131 DMFRSKRVIELGS-G-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDT 208 (309)
Q Consensus 131 ~~~~g~~VLELG~-G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~ 208 (309)
...+|.+||=.|+ | .|...+.+|+..+ .+|++++.++.-.+.+++.+.... -+.....++...-.......
T Consensus 142 ~~~~~~~vlI~g~~g~ig~~~~~~a~~~G-~~vi~~~~~~~~~~~~~~~~g~~~------~~~~~~~~~~~~v~~~~~~~ 214 (329)
T cd05288 142 KPKPGETVVVSAAAGAVGSVVGQIAKLLG-ARVVGIAGSDEKCRWLVEELGFDA------AINYKTPDLAEALKEAAPDG 214 (329)
T ss_pred CCCCCCEEEEecCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhhcCCce------EEecCChhHHHHHHHhccCC
Confidence 4456789988884 4 4777777777765 489999988876666544221110 01100000000000011246
Q ss_pred ccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 209 FDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 209 fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
+|+++.. .- ...+....+.++++| .++.+.
T Consensus 215 ~d~vi~~--~g-----~~~~~~~~~~l~~~G--~~v~~g 244 (329)
T cd05288 215 IDVYFDN--VG-----GEILDAALTLLNKGG--RIALCG 244 (329)
T ss_pred ceEEEEc--ch-----HHHHHHHHHhcCCCc--eEEEEe
Confidence 8988853 22 235677778888888 455444
No 485
>PRK10083 putative oxidoreductase; Provisional
Probab=56.99 E-value=40 Score=30.70 Aligned_cols=48 Identities=13% Similarity=0.174 Sum_probs=35.0
Q ss_pred CcCcCCCCeEEEeCCCC-ChhhHHHHHh-cCCcEEEEEcCCHHHHHHHHH
Q 021691 129 HADMFRSKRVIELGSGY-GLAGLVIAAT-TEALEVVISDGNPQVVDYIQR 176 (309)
Q Consensus 129 ~~~~~~g~~VLELG~Gt-G~~~l~la~~-~~~~~V~~tD~~~~~l~~~~~ 176 (309)
.....+|.+||=.|+|. |...+.+|+. .|...|+++|.+++-.+.+++
T Consensus 155 ~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~ 204 (339)
T PRK10083 155 RTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKE 204 (339)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH
Confidence 34556788999999764 6666667775 477779999988877766654
No 486
>PRK06182 short chain dehydrogenase; Validated
Probab=56.99 E-value=1.4e+02 Score=26.24 Aligned_cols=39 Identities=13% Similarity=0.079 Sum_probs=26.1
Q ss_pred CCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHH
Q 021691 134 RSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDY 173 (309)
Q Consensus 134 ~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~ 173 (309)
++++||=.|++ |.+|..+++.+ .+.+|++++.+++-++.
T Consensus 2 ~~k~vlItGas-ggiG~~la~~l~~~G~~V~~~~r~~~~l~~ 42 (273)
T PRK06182 2 QKKVALVTGAS-SGIGKATARRLAAQGYTVYGAARRVDKMED 42 (273)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 46788888864 44566655543 35689999988765543
No 487
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=56.48 E-value=38 Score=28.89 Aligned_cols=63 Identities=22% Similarity=0.230 Sum_probs=38.3
Q ss_pred CCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHH
Q 021691 110 TGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQR 176 (309)
Q Consensus 110 tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~ 176 (309)
||.. +.-+.....+.... .....|++|+=+|.| .+|..+|+.+ .+.+|+++|.+++.++.+..
T Consensus 5 Tg~G-v~~~~~~~~~~~~~-~~~l~gk~v~I~G~G--~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~ 69 (200)
T cd01075 5 TAYG-VFLGMKAAAEHLLG-TDSLEGKTVAVQGLG--KVGYKLAEHLLEEGAKLIVADINEEAVARAAE 69 (200)
T ss_pred hHHH-HHHHHHHHHHHhcC-CCCCCCCEEEEECCC--HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 4444 33333444443311 345689999999998 3444444332 24699999999887766654
No 488
>PRK14852 hypothetical protein; Provisional
Probab=56.27 E-value=13 Score=39.53 Aligned_cols=44 Identities=20% Similarity=0.144 Sum_probs=30.5
Q ss_pred CCCCeEEEeCCC-CChh-hHHHHHhcCCcEEEEEcCCHHHHHHHHHH
Q 021691 133 FRSKRVIELGSG-YGLA-GLVIAATTEALEVVISDGNPQVVDYIQRN 177 (309)
Q Consensus 133 ~~g~~VLELG~G-tG~~-~l~la~~~~~~~V~~tD~~~~~l~~~~~n 177 (309)
.+..+|+=+||| .|.. ...||. .|.++++.+|.+.--+.++.++
T Consensus 330 L~~srVlVvGlGGlGs~ia~~LAr-aGVG~I~L~D~D~Ve~SNLNRQ 375 (989)
T PRK14852 330 LLRSRVAIAGLGGVGGIHLMTLAR-TGIGNFNLADFDAYSPVNLNRQ 375 (989)
T ss_pred HhcCcEEEECCcHHHHHHHHHHHH-cCCCeEEEEcCCEecccccccc
Confidence 457799999999 5644 445544 5778999999876555555443
No 489
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=56.21 E-value=12 Score=31.92 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=23.1
Q ss_pred CCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCH
Q 021691 134 RSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNP 168 (309)
Q Consensus 134 ~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~ 168 (309)
.+.+||=+|||. |..-.....+.|..+++.+|.+.
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 457899999985 43322222335778999999653
No 490
>PF05575 V_cholerae_RfbT: Vibrio cholerae RfbT protein; InterPro: IPR008890 This family consists of several RfbT proteins from Vibrio cholerae. It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of V. cholerae O1 [] and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion [].
Probab=56.04 E-value=9.6 Score=31.80 Aligned_cols=58 Identities=16% Similarity=0.218 Sum_probs=43.8
Q ss_pred HHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccC
Q 021691 124 FFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSG 183 (309)
Q Consensus 124 ~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~ 183 (309)
.|+..+. ..+.+-+|+|+..|.+.-..|+..-.+++++++.-.+|-..++.|++.|..
T Consensus 71 hwivnhc--khdttyidiganvgtfcgiaarhitqgkiiaiepltemensirmnvqlnnp 128 (286)
T PF05575_consen 71 HWIVNHC--KHDTTYIDIGANVGTFCGIAARHITQGKIIAIEPLTEMENSIRMNVQLNNP 128 (286)
T ss_pred Hhhhhhc--cCCceEEEeccccccchhhhhhhcccCceEEEechhhhhhheeeeeeeCCc
Confidence 3455443 245689999999986644447766778999999999998888888888764
No 491
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=55.85 E-value=39 Score=30.79 Aligned_cols=99 Identities=13% Similarity=0.073 Sum_probs=56.4
Q ss_pred CcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCc
Q 021691 131 DMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTF 209 (309)
Q Consensus 131 ~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~f 209 (309)
....|.+||=.|+|. |...+.+|+..+. +|++++.+++-++.+++ .+.. .-+....-++... .... ..+
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~----~g~~---~~i~~~~~~~~~~-~~~~-~~~ 229 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARK----LGAH---HYIDTSKEDVAEA-LQEL-GGA 229 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----cCCc---EEecCCCccHHHH-HHhc-CCC
Confidence 456788999999764 7777777887665 79999988876666643 1221 0000000000000 0001 247
Q ss_pred cEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691 210 DVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247 (309)
Q Consensus 210 DvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~ 247 (309)
|+++.. .- ....+....+.++++| .++.+.
T Consensus 230 d~vi~~--~g----~~~~~~~~~~~l~~~G--~~v~~g 259 (333)
T cd08296 230 KLILAT--AP----NAKAISALVGGLAPRG--KLLILG 259 (333)
T ss_pred CEEEEC--CC----chHHHHHHHHHcccCC--EEEEEe
Confidence 988852 11 1345666777888888 455443
No 492
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=55.66 E-value=1.1e+02 Score=27.63 Aligned_cols=115 Identities=16% Similarity=0.056 Sum_probs=60.9
Q ss_pred EEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEc
Q 021691 138 VIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVAS 215 (309)
Q Consensus 138 VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~ 215 (309)
|-=+|+| ..|..+|+.+ .+.+|++.|.+++..+.+.. .+.. +. -+. .+.-......|+|+..
T Consensus 3 Ig~IGlG--~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~----~g~~-------~~-~~~--~e~~~~~~~~dvvi~~ 66 (301)
T PRK09599 3 LGMIGLG--RMGGNMARRLLRGGHEVVGYDRNPEAVEALAE----EGAT-------GA-DSL--EELVAKLPAPRVVWLM 66 (301)
T ss_pred EEEEccc--HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----CCCe-------ec-CCH--HHHHhhcCCCCEEEEE
Confidence 4445655 3333333321 24689999999877765532 2221 00 000 0000000124787774
Q ss_pred CCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEe
Q 021691 216 DCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIE 272 (309)
Q Consensus 216 d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~ 272 (309)
+-.......++..+...++++. .++-+++..+.+..++.+.+++.|..+....
T Consensus 67 --v~~~~~~~~v~~~l~~~l~~g~--ivid~st~~~~~~~~~~~~~~~~g~~~~dap 119 (301)
T PRK09599 67 --VPAGEITDATIDELAPLLSPGD--IVIDGGNSYYKDDIRRAELLAEKGIHFVDVG 119 (301)
T ss_pred --ecCCcHHHHHHHHHHhhCCCCC--EEEeCCCCChhHHHHHHHHHHHcCCEEEeCC
Confidence 2233344556666666666654 4444445556667778888999998775443
No 493
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=55.40 E-value=91 Score=28.27 Aligned_cols=111 Identities=17% Similarity=0.072 Sum_probs=58.9
Q ss_pred EeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEcCC
Q 021691 140 ELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDC 217 (309)
Q Consensus 140 ELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ 217 (309)
=+|+| ..|..+|+.+ .+.+|++.|.+++..+.++. .+.. + +. ...+.-......|+|+.+
T Consensus 5 ~IGlG--~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~----~g~~-----~-~~----s~~~~~~~~~~advVi~~-- 66 (299)
T PRK12490 5 LIGLG--KMGGNMAERLREDGHEVVGYDVNQEAVDVAGK----LGIT-----A-RH----SLEELVSKLEAPRTIWVM-- 66 (299)
T ss_pred EEccc--HHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH----CCCe-----e-cC----CHHHHHHhCCCCCEEEEE--
Confidence 35554 4444444321 24689999999876665532 1221 0 00 000000001125788774
Q ss_pred CCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEE
Q 021691 218 TFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSI 270 (309)
Q Consensus 218 ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~ 270 (309)
+......+.++..+...++++. .++-+++..+.+..+..+.+.+.|..+..
T Consensus 67 vp~~~~~~~v~~~i~~~l~~g~--ivid~st~~~~~~~~~~~~~~~~g~~~vd 117 (299)
T PRK12490 67 VPAGEVTESVIKDLYPLLSPGD--IVVDGGNSRYKDDLRRAEELAERGIHYVD 117 (299)
T ss_pred ecCchHHHHHHHHHhccCCCCC--EEEECCCCCchhHHHHHHHHHHcCCeEEe
Confidence 3333455666666666665554 44445555677777888888888876644
No 494
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=55.18 E-value=29 Score=30.93 Aligned_cols=131 Identities=13% Similarity=0.138 Sum_probs=57.9
Q ss_pred CCCCeEEEeCCCCChhhHHHHHhc-----CCcEEEEEcCC-----H---------------------HHHHHHHHHHHhc
Q 021691 133 FRSKRVIELGSGYGLAGLVIAATT-----EALEVVISDGN-----P---------------------QVVDYIQRNVDAN 181 (309)
Q Consensus 133 ~~g~~VLELG~GtG~~~l~la~~~-----~~~~V~~tD~~-----~---------------------~~l~~~~~n~~~n 181 (309)
++| .|+|.||--|..++.++..+ ...++++.|.= + ..++.++.|+...
T Consensus 74 vpG-divE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~ 152 (248)
T PF05711_consen 74 VPG-DIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY 152 (248)
T ss_dssp S-S-EEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT
T ss_pred CCe-EEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc
Confidence 455 79999999998777654432 34578888720 1 1233333333333
Q ss_pred cCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCch-HHHHHHH
Q 021691 182 SGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDS-LDKFLEE 260 (309)
Q Consensus 182 ~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~-~~~f~~~ 260 (309)
++. ..++.+......+.....+..++-++-. |+=.. +.....+..++..|.+|| +|+++...... .+..-+-
T Consensus 153 gl~--~~~v~~vkG~F~dTLp~~p~~~IAll~l-D~DlY-esT~~aLe~lyprl~~GG---iIi~DDY~~~gcr~AvdeF 225 (248)
T PF05711_consen 153 GLL--DDNVRFVKGWFPDTLPDAPIERIALLHL-DCDLY-ESTKDALEFLYPRLSPGG---IIIFDDYGHPGCRKAVDEF 225 (248)
T ss_dssp TTS--STTEEEEES-HHHHCCC-TT--EEEEEE----SH-HHHHHHHHHHGGGEEEEE---EEEESSTTTHHHHHHHHHH
T ss_pred CCC--cccEEEECCcchhhhccCCCccEEEEEE-eccch-HHHHHHHHHHHhhcCCCe---EEEEeCCCChHHHHHHHHH
Confidence 321 2456665544322211122334433333 32111 123455666777788888 77777554321 2233344
Q ss_pred HHhCCCeEEEE
Q 021691 261 IEGNHLHFSII 271 (309)
Q Consensus 261 ~~~~G~~~~~~ 271 (309)
..+.|+.....
T Consensus 226 ~~~~gi~~~l~ 236 (248)
T PF05711_consen 226 RAEHGITDPLH 236 (248)
T ss_dssp HHHTT--S--E
T ss_pred HHHcCCCCccE
Confidence 55677655433
No 495
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=55.08 E-value=43 Score=30.18 Aligned_cols=94 Identities=16% Similarity=0.176 Sum_probs=51.1
Q ss_pred CeEEEeCCCC-C-hhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhc-------cCCCC------CCceEEEEeeCCCC
Q 021691 136 KRVIELGSGY-G-LAGLVIAATTEALEVVISDGNPQVVDYIQRNVDAN-------SGAFG------GTTVKSMTLHWNQD 200 (309)
Q Consensus 136 ~~VLELG~Gt-G-~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n-------~~~~~------~~~v~~~~l~w~~~ 200 (309)
++|.=+|+|. | ..+..++. .+.+|++.|.+++.++.+...+..+ +.... ..++.. ...
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-----~~~ 77 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCAL--AGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-----ATD 77 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-----eCC
Confidence 5677789986 3 22333333 2568999999999888766554433 11000 001111 111
Q ss_pred CCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691 201 DFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 201 ~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G 239 (309)
. .. ....|+|+.+ +.-.......+++.+...++++.
T Consensus 78 ~-~~-~~~aD~Viea-vpe~~~~k~~~~~~l~~~~~~~~ 113 (292)
T PRK07530 78 L-ED-LADCDLVIEA-ATEDETVKRKIFAQLCPVLKPEA 113 (292)
T ss_pred H-HH-hcCCCEEEEc-CcCCHHHHHHHHHHHHhhCCCCc
Confidence 1 11 2357888875 22222345566777777776654
No 496
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=55.07 E-value=1e+02 Score=27.89 Aligned_cols=45 Identities=11% Similarity=0.005 Sum_probs=28.9
Q ss_pred CCCCeEEEeCCCC-Chh-hHHHHHhcCCcEEEEEcCCHHHHHHHHHHH
Q 021691 133 FRSKRVIELGSGY-GLA-GLVIAATTEALEVVISDGNPQVVDYIQRNV 178 (309)
Q Consensus 133 ~~g~~VLELG~Gt-G~~-~l~la~~~~~~~V~~tD~~~~~l~~~~~n~ 178 (309)
....+||=+|||. |.. ...++. .|-++++.+|.+.--..++..|+
T Consensus 24 L~~SrVLVVG~GGLGsEVAKnLaL-AGVGsItIvDdD~Ve~SNL~RQf 70 (287)
T PTZ00245 24 LMHTSVALHGVAGAAAEAAKNLVL-AGVRAVAVADEGLVTDADVCTNY 70 (287)
T ss_pred HhhCeEEEECCCchHHHHHHHHHH-cCCCeEEEecCCccchhhhcccc
Confidence 3567999999973 433 233333 46789999998765555555443
No 497
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=54.80 E-value=83 Score=28.89 Aligned_cols=91 Identities=12% Similarity=0.181 Sum_probs=52.7
Q ss_pred CeEEEeCCCC--ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCC--CCceEEEEeeCCCCCCCCCCCCccE
Q 021691 136 KRVIELGSGY--GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFG--GTTVKSMTLHWNQDDFPYIVDTFDV 211 (309)
Q Consensus 136 ~~VLELG~Gt--G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~--~~~v~~~~l~w~~~~~~~~~~~fDv 211 (309)
++|+=+|+|. |+++..|++. + ..|+.+-.++. ++.++++ |+... ..+...... ....+.....+|+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~-g-~~V~~~~R~~~-~~~l~~~----GL~i~~~~~~~~~~~~---~~~~~~~~~~~Dl 70 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA-G-HDVTLLVRSRR-LEALKKK----GLRIEDEGGNFTTPVV---AATDAEALGPADL 70 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-C-CeEEEEecHHH-HHHHHhC----CeEEecCCCccccccc---cccChhhcCCCCE
Confidence 3688899995 5777777775 3 57777776665 6666653 44210 010000001 0111222357999
Q ss_pred EEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691 212 IVASDCTFFKEFHKDLARIIKFLLKKVG 239 (309)
Q Consensus 212 Ii~~d~ly~~~~~~~ll~~l~~lLk~~G 239 (309)
|+.+-=-| +.+..++.+..+++++.
T Consensus 71 viv~vKa~---q~~~al~~l~~~~~~~t 95 (307)
T COG1893 71 VIVTVKAY---QLEEALPSLAPLLGPNT 95 (307)
T ss_pred EEEEeccc---cHHHHHHHhhhcCCCCc
Confidence 99853333 35678888888888776
No 498
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=54.69 E-value=9.1 Score=34.33 Aligned_cols=45 Identities=16% Similarity=0.198 Sum_probs=32.9
Q ss_pred HHHHHHHhhC-----cCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcC
Q 021691 120 DVLAFFSLSH-----ADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDG 166 (309)
Q Consensus 120 ~~La~~l~~~-----~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~ 166 (309)
..|-.|+... .+...|+.+.||-+|||.+|-.+-+. +..|++-|+
T Consensus 8 ~~LlsFi~~~i~~~~k~~~s~k~f~DiFaGtGVV~~~fkk~--~n~iiaNDl 57 (330)
T COG3392 8 YKLLSFIKENIHEVKKEDLSGKIFCDIFAGTGVVGRFFKKA--GNKIIANDL 57 (330)
T ss_pred HHHHHHHHHHHHHHhhcccCCCeeeeeccCccHHHHHHHHh--cchhhhchH
Confidence 3344555442 34567889999999999999986554 568999886
No 499
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=54.65 E-value=39 Score=30.70 Aligned_cols=46 Identities=17% Similarity=0.162 Sum_probs=34.3
Q ss_pred cCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHH
Q 021691 130 ADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQ 175 (309)
Q Consensus 130 ~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~ 175 (309)
....+|.+||=.|+|. |...+.+|+...+.+|++++.+++-.+.++
T Consensus 158 ~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~ 204 (338)
T PRK09422 158 SGIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAK 204 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHH
Confidence 4556788999999763 666777777543458999999988777774
No 500
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=54.56 E-value=1.8e+02 Score=26.92 Aligned_cols=114 Identities=22% Similarity=0.138 Sum_probs=65.3
Q ss_pred CeEEEeCCCC-C-hhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhc-------cCCCC--CCceEEEEeeCCCCCCCC
Q 021691 136 KRVIELGSGY-G-LAGLVIAATTEALEVVISDGNPQVVDYIQRNVDAN-------SGAFG--GTTVKSMTLHWNQDDFPY 204 (309)
Q Consensus 136 ~~VLELG~Gt-G-~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n-------~~~~~--~~~v~~~~l~w~~~~~~~ 204 (309)
++|-=+|+|+ | ..+..++. .+.+|++.|.+++.++.++..+... +.... ..+++. .. +...
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~--aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~-----~~-~l~~ 79 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALA--HGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRF-----VA-TIEA 79 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhcee-----cC-CHHH
Confidence 5788889986 3 22223333 3789999999999888776655422 11000 001111 00 1111
Q ss_pred CCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHH
Q 021691 205 IVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIE 262 (309)
Q Consensus 205 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~ 262 (309)
.-...|+|+-+ +....+....+++.+.+.++++. ++.+++. .-...+|.+.+.
T Consensus 80 av~~aDlViEa-vpE~l~vK~~lf~~l~~~~~~~a---IlaSnTS-~l~~s~la~~~~ 132 (321)
T PRK07066 80 CVADADFIQES-APEREALKLELHERISRAAKPDA---IIASSTS-GLLPTDFYARAT 132 (321)
T ss_pred HhcCCCEEEEC-CcCCHHHHHHHHHHHHHhCCCCe---EEEECCC-ccCHHHHHHhcC
Confidence 12457999884 66666677788888888887654 4444443 444456666554
Done!