BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021692
(309 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IA4|A Chain A, Crystal Structure Of Novel Amino Acid Binding Protein From
Shigella Flexneri
pdb|2IA4|B Chain B, Crystal Structure Of Novel Amino Acid Binding Protein From
Shigella Flexneri
Length = 287
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 23/51 (45%)
Query: 36 GSISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCEVLPIWGALLVG 86
G+ S V+ + LN QK R+ AKD GDS L ALL G
Sbjct: 138 GTTSEVLLNKLNEEQKXNXRIISAKDHGDSFRTLESGRAVAFXXDDALLAG 188
>pdb|2VHA|A Chain A, Debp
pdb|2VHA|B Chain B, Debp
Length = 287
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%)
Query: 36 GSISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCEVLPIWGALLVG 86
G+ S V+ + LN QK R+ AKD GDS L + ALL G
Sbjct: 138 GTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGRAVAFMMDDALLAG 188
>pdb|1PWX|A Chain A, Crystal Structure Of The Haloalcohol Dehalogenase Hhec
Complexed With Bromide
pdb|1PWX|B Chain B, Crystal Structure Of The Haloalcohol Dehalogenase Hhec
Complexed With Bromide
pdb|1PWX|C Chain C, Crystal Structure Of The Haloalcohol Dehalogenase Hhec
Complexed With Bromide
pdb|1PWX|D Chain D, Crystal Structure Of The Haloalcohol Dehalogenase Hhec
Complexed With Bromide
pdb|1PWZ|A Chain A, Crystal Structure Of The Haloalcohol Dehalogenase Hhec
Complexed With (R)-Styrene Oxide And Chloride
pdb|1PWZ|B Chain B, Crystal Structure Of The Haloalcohol Dehalogenase Hhec
Complexed With (R)-Styrene Oxide And Chloride
pdb|1PX0|A Chain A, Crystal Structure Of The Haloalcohol Dehalogenase Hhec
Complexed With The Haloalcohol Mimic (R)-1-Para-Nitro-
Phenyl-2-Azido-Ethanol
pdb|1PX0|B Chain B, Crystal Structure Of The Haloalcohol Dehalogenase Hhec
Complexed With The Haloalcohol Mimic (R)-1-Para-Nitro-
Phenyl-2-Azido-Ethanol
pdb|1PX0|C Chain C, Crystal Structure Of The Haloalcohol Dehalogenase Hhec
Complexed With The Haloalcohol Mimic (R)-1-Para-Nitro-
Phenyl-2-Azido-Ethanol
pdb|1PX0|D Chain D, Crystal Structure Of The Haloalcohol Dehalogenase Hhec
Complexed With The Haloalcohol Mimic (R)-1-Para-Nitro-
Phenyl-2-Azido-Ethanol
pdb|1ZMT|A Chain A, Structure Of Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With
(R)-Para-Nitro Styrene Oxide, With A Water Molecule In
The Halide-Binding Site
pdb|1ZMT|B Chain B, Structure Of Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With
(R)-Para-Nitro Styrene Oxide, With A Water Molecule In
The Halide-Binding Site
pdb|1ZMT|C Chain C, Structure Of Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With
(R)-Para-Nitro Styrene Oxide, With A Water Molecule In
The Halide-Binding Site
pdb|1ZMT|D Chain D, Structure Of Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With
(R)-Para-Nitro Styrene Oxide, With A Water Molecule In
The Halide-Binding Site
pdb|1ZO8|A Chain A, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|B Chain B, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|C Chain C, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|D Chain D, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|E Chain E, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|F Chain F, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|G Chain G, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|H Chain H, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|I Chain I, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|J Chain J, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|K Chain K, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|L Chain L, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|M Chain M, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|N Chain N, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|O Chain O, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|P Chain P, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
Length = 254
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 53 IARLGVAKDLGDSVGFLAGSLCEVL 77
+ RLG K+LG+ V FLA C+ L
Sbjct: 208 LQRLGTQKELGELVAFLASGSCDYL 232
>pdb|2UZF|A Chain A, Crystal Structure Of Staphylococcus Aureus
1,4-Dihydroxy-2- Naphthoyl Coa Synthase (Menb) In
Complex With Acetoacetyl Coa
pdb|2UZF|B Chain B, Crystal Structure Of Staphylococcus Aureus
1,4-Dihydroxy-2- Naphthoyl Coa Synthase (Menb) In
Complex With Acetoacetyl Coa
Length = 273
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 118 FVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHA 174
+VG + N L ++ PK PV+ ++KG+A GG +L V + A D+A
Sbjct: 85 YVGEDQIPRLNVLDLQRLIRIIPK---PVIAMVKGYAVGGGNVLNVVCDLTIAADNA 138
>pdb|4IXT|A Chain A, Structure Of A 37-fold Mutant Of Halohydrin Dehalogenase
(hhec) Bound To Ethyl (r)-4-cyano-3-hydroxybutyrate
pdb|4IXT|B Chain B, Structure Of A 37-fold Mutant Of Halohydrin Dehalogenase
(hhec) Bound To Ethyl (r)-4-cyano-3-hydroxybutyrate
pdb|4IXW|A Chain A, Halohydrin Dehalogenase (hhec) Bound To Ethyl
(2s)-oxiran-2-ylacetate
pdb|4IXW|B Chain B, Halohydrin Dehalogenase (hhec) Bound To Ethyl
(2s)-oxiran-2-ylacetate
pdb|4IY1|A Chain A, Structure Of A 37-fold Mutant Of Halohydrin Dehalogenase
(hhec) With Chloride Bound
pdb|4IY1|B Chain B, Structure Of A 37-fold Mutant Of Halohydrin Dehalogenase
(hhec) With Chloride Bound
Length = 254
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 53 IARLGVAKDLGDSVGFLAGSLCEVL 77
+ RLG K+LG+ V FLA C+ L
Sbjct: 208 LQRLGTQKELGELVTFLASGSCDYL 232
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,384,578
Number of Sequences: 62578
Number of extensions: 312977
Number of successful extensions: 572
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 568
Number of HSP's gapped (non-prelim): 6
length of query: 309
length of database: 14,973,337
effective HSP length: 99
effective length of query: 210
effective length of database: 8,778,115
effective search space: 1843404150
effective search space used: 1843404150
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)