Query 021692
Match_columns 309
No_of_seqs 283 out of 1391
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 07:53:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021692.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021692hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 99.6 2.3E-16 1.7E-20 146.5 11.0 186 12-201 20-210 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 99.2 3.2E-10 2.3E-14 101.3 18.0 162 36-200 28-193 (417)
3 d1pv7a_ f.38.1.2 (A:) Lactose 99.0 6.4E-10 4.6E-14 99.3 11.1 148 47-201 255-406 (417)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 98.9 6.9E-09 5E-13 95.0 13.0 137 31-169 264-403 (447)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 7.9 1.6E+02 0.012 15.1 3.5 11 191-201 19-29 (30)
6 d1u69a_ d.32.1.7 (A:) Hypothet 6.7 93 0.0068 23.0 1.7 33 49-81 82-114 (156)
7 d2oara1 f.16.1.1 (A:10-118) Ga 5.4 84 0.0061 22.0 0.7 11 292-302 98-108 (109)
8 d1e3oc2 a.35.1.1 (C:1-75) Oct- 4.2 2.8E+02 0.021 17.8 2.7 12 45-56 22-33 (75)
9 d2ppxa1 a.35.1.3 (A:30-91) Unc 4.0 2.5E+02 0.018 16.7 2.3 16 41-56 6-21 (62)
10 d2auwa1 a.35.1.10 (A:88-154) H 3.9 2.6E+02 0.019 17.3 2.3 17 40-56 7-23 (67)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.64 E-value=2.3e-16 Score=146.46 Aligned_cols=186 Identities=14% Similarity=0.159 Sum_probs=135.7
Q ss_pred ccchHHHHHHHHHHHHHhh-hhhhHHhhHHHHHHhhCCCHHHHHHHHHHHHHHhhh-hhhhhhhccccchHHHHHHHHHH
Q 021692 12 FNNRWLVFVAAMWIQSCAG-IGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQ 89 (309)
Q Consensus 12 ~~~rw~~l~~~~l~~~~~g-~~Y~fsvys~~l~~~lg~s~~~~~~i~~~~~vg~~~-~~~~G~L~Dr~Gpr~vllig~~l 89 (309)
.+.||.++...++...... ....+++..|.++ ++|+|.+|.+++.+...++..+ .++.|++.||+|+|+++.++.++
T Consensus 20 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~ 98 (447)
T d1pw4a_ 20 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 98 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 4557887766655544333 3456777777776 5899999999998888888877 66999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHhchhhhhhhHHHHHhhhcC-CCCCcchhhhhhhhhhhHHHHHHHHHHH
Q 021692 90 NFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMI 168 (309)
Q Consensus 90 ~~~gy~l~~l~~~~~i~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~FP-~~RG~avGi~~~~~GLg~ai~~~i~~~~ 168 (309)
..++..+........ .+++.+.+...+.|.+.+..+.+....+.+|+| ++||.+.|+...+.++|+.+.+.+....
T Consensus 99 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~ 175 (447)
T d1pw4a_ 99 AAAVMLFMGFVPWAT---SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 175 (447)
T ss_dssp HHHHHHHHHHCHHHH---SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHhhccccchhh---hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhH
Confidence 888877765432110 146667777778888888888888899999999 5599999999998888888776654433
Q ss_pred c--cCChHHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 021692 169 H--APDHANLIFMVAVGPAMVVIALMFIIRPVGGH 201 (309)
Q Consensus 169 ~--~~~~~~~~l~la~~~~~v~l~~~~~ir~~p~~ 201 (309)
. .++++..+...++...++.++...++|++|.+
T Consensus 176 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (447)
T d1pw4a_ 176 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQS 210 (447)
T ss_dssp HHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTT
T ss_pred hhhhhcccccchhhhhhHHHHHHHHHHhcccchhh
Confidence 3 22333333345555556666777788877643
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.20 E-value=3.2e-10 Score=101.33 Aligned_cols=162 Identities=12% Similarity=0.081 Sum_probs=95.0
Q ss_pred HhhHHHHHHhhCCCHHHHHHHHHHHHHHhhh-hhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHH
Q 021692 36 GSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMC 114 (309)
Q Consensus 36 svys~~l~~~lg~s~~~~~~i~~~~~vg~~~-~~~~G~L~Dr~Gpr~vllig~~l~~~gy~l~~l~~~~~i~~~s~~~l~ 114 (309)
+.+...+++++|+|.+|++.+.+...++..+ .++.|++.||+|+|++++++.....++..++....... ...+...
T Consensus 28 ~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 104 (417)
T d1pv7a_ 28 PFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP---LLQYNIL 104 (417)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHH---HHHTTCH
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhh---hHHHHHH
Confidence 3444458899999999999998888888877 77999999999999999999888777666554432110 0111112
Q ss_pred HHHHHHHhchhhhhhhHHHHHhhhcC---CCCCcchhhhhhhhhhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHH
Q 021692 115 ILIFVGNNGETYFNTAALVSCVQNFP---KSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIAL 191 (309)
Q Consensus 115 ~~~~l~g~g~~~~~~~~~~~~~~~FP---~~RG~avGi~~~~~GLg~ai~~~i~~~~~~~~~~~~~l~la~~~~~v~l~~ 191 (309)
+...+.+.+.+....+.........+ ++|....+......+.+..+.+.+.....+.++.......+....+..++.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 184 (417)
T d1pv7a_ 105 VGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLL 184 (417)
T ss_dssp HHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccccccchhhHHHHHHHHH
Confidence 22233333344444344433333332 345666666666666666655555444433333333333444444444555
Q ss_pred HhhcccCCC
Q 021692 192 MFIIRPVGG 200 (309)
Q Consensus 192 ~~~ir~~p~ 200 (309)
.+..++++.
T Consensus 185 ~~~~~~~~~ 193 (417)
T d1pv7a_ 185 FFAKTDAPS 193 (417)
T ss_dssp HSSCCCSCS
T ss_pred HHHhccccc
Confidence 555555443
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.01 E-value=6.4e-10 Score=99.34 Aligned_cols=148 Identities=9% Similarity=0.025 Sum_probs=102.4
Q ss_pred CCCHHHHHHHHHHHHHHhhh-hhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHhchh
Q 021692 47 NYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGET 125 (309)
Q Consensus 47 g~s~~~~~~i~~~~~vg~~~-~~~~G~L~Dr~Gpr~vllig~~l~~~gy~l~~l~~~~~i~~~s~~~l~~~~~l~g~g~~ 125 (309)
+.+............++..+ ..+.|++.||+|+|+++.++.++..+++.++.. . ++.|.+.....+.+.+.+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~l~g~~~~ 327 (417)
T d1pv7a_ 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF--A-----TSALEVVILKTLHMFEVP 327 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT--C-----CCHHHHHHHHHHHHHHHH
T ss_pred ccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccc--c-----cccchhhHHHHHHHHHHH
Confidence 33444444444444455544 558999999999999999999888877766533 1 257777777777788888
Q ss_pred hhhhhHHHHHhhhcC-CCCCcchhhh-hhhhhhhHHHHHHHHHHHccC-ChHHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 021692 126 YFNTAALVSCVQNFP-KSRGPVVGIL-KGFAGLGGAILTQVYTMIHAP-DHANLIFMVAVGPAMVVIALMFIIRPVGGH 201 (309)
Q Consensus 126 ~~~~~~~~~~~~~FP-~~RG~avGi~-~~~~GLg~ai~~~i~~~~~~~-~~~~~~l~la~~~~~v~l~~~~~ir~~p~~ 201 (309)
..++.......+.+| ++||++.|+. ....++|+++.+.+...+.+. +...-++..+++.++.+++..+++|.+.+.
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 406 (417)
T d1pv7a_ 328 FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPL 406 (417)
T ss_dssp HHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCT
T ss_pred HHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 888888888999999 5699999985 345568888877776655543 333333455666666666777777765443
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=98.88 E-value=6.9e-09 Score=95.00 Aligned_cols=137 Identities=13% Similarity=-0.002 Sum_probs=87.1
Q ss_pred hhhhHHhhHHH-HHHhhCCCHHHHHHHHHHHHHHhhh-hhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHhCCCCCh
Q 021692 31 IGYLFGSISPV-IKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVL 108 (309)
Q Consensus 31 ~~Y~fsvys~~-l~~~lg~s~~~~~~i~~~~~vg~~~-~~~~G~L~Dr~Gpr~vllig~~l~~~gy~l~~l~~~~~i~~~ 108 (309)
..+.+..+.+. +++.++++..+.+.......++..+ .++.|++.||++++...........+....... .......
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 341 (447)
T d1pw4a_ 264 LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIV--YWMNPAG 341 (447)
T ss_dssp HHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHH--TTSCCTT
T ss_pred hhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHH--HHhcccc
Confidence 34444445544 5778999999998887777666666 558999999999765444333333222111111 1111122
Q ss_pred hHHHHHHHHHHHHhchhhhhhhHHHHHhhhcCC-CCCcchhhhhhhhhhhHHHHHHHHHHHc
Q 021692 109 PLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVYTMIH 169 (309)
Q Consensus 109 s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~FP~-~RG~avGi~~~~~GLg~ai~~~i~~~~~ 169 (309)
+.+...+...+.|.+.+...........+.+|+ +||++.|+......+++.+.+++...++
T Consensus 342 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~ 403 (447)
T d1pw4a_ 342 NPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYT 403 (447)
T ss_dssp CHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666655666666666666666778899995 5999999987766677777766555443
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.90 E-value=1.6e+02 Score=15.14 Aligned_cols=11 Identities=9% Similarity=0.060 Sum_probs=7.7
Q ss_pred HHhhcccCCCC
Q 021692 191 LMFIIRPVGGH 201 (309)
Q Consensus 191 ~~~~ir~~p~~ 201 (309)
.+.|.|+||+.
T Consensus 19 faiffreppri 29 (30)
T d2axtt1 19 FAIFFREPPRI 29 (30)
T ss_dssp HHHHTSCCCCC
T ss_pred HHHHhcCCCCC
Confidence 35778888763
No 6
>d1u69a_ d.32.1.7 (A:) Hypothetical protein PA2721 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=6.66 E-value=93 Score=23.03 Aligned_cols=33 Identities=18% Similarity=-0.089 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHHHHhhhhhhhhhhccccchHH
Q 021692 49 NQKQIARLGVAKDLGDSVGFLAGSLCEVLPIWG 81 (309)
Q Consensus 49 s~~~~~~i~~~~~vg~~~~~~~G~L~Dr~Gpr~ 81 (309)
|+.++.-+.-...-++-..-+.|++-||||-++
T Consensus 82 ~~eE~d~~f~~LsegG~~~~~~G~v~DkFGV~W 114 (156)
T d1u69a_ 82 DQAETDRLWNAIVDNGGEESACGWCRDKWGISW 114 (156)
T ss_dssp SHHHHHHHHHHHHHTTCEECSTTEEECTTSCEE
T ss_pred CHHHHHHHHHHHhccCCCCCCCeEEECCCCCEE
Confidence 344444443322233334446899999999543
No 7
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=5.44 E-value=84 Score=22.02 Aligned_cols=11 Identities=36% Similarity=0.425 Sum_probs=7.0
Q ss_pred cccchhhhhcc
Q 021692 292 QETDEVILSEG 302 (309)
Q Consensus 292 ~~~~~~~~~~~ 302 (309)
.+++.++++|+
T Consensus 98 ~p~e~~LL~EI 108 (109)
T d2oara1 98 GDTQVVLLTEI 108 (109)
T ss_dssp HHHHHHHHHHH
T ss_pred CCcHHHHHHhh
Confidence 34556677775
No 8
>d1e3oc2 a.35.1.1 (C:1-75) Oct-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.19 E-value=2.8e+02 Score=17.81 Aligned_cols=12 Identities=17% Similarity=0.357 Sum_probs=9.7
Q ss_pred hhCCCHHHHHHH
Q 021692 45 SLNYNQKQIARL 56 (309)
Q Consensus 45 ~lg~s~~~~~~i 56 (309)
.+|++|.|++..
T Consensus 22 ~LG~TQ~dVG~a 33 (75)
T d1e3oc2 22 KLGFTQGDVGLA 33 (75)
T ss_dssp HTTCCHHHHHHH
T ss_pred hccccHHHHHHH
Confidence 589999998764
No 9
>d2ppxa1 a.35.1.3 (A:30-91) Uncharacterized protein Atu1735 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=4.00 E-value=2.5e+02 Score=16.67 Aligned_cols=16 Identities=19% Similarity=0.436 Sum_probs=12.4
Q ss_pred HHHHhhCCCHHHHHHH
Q 021692 41 VIKSSLNYNQKQIARL 56 (309)
Q Consensus 41 ~l~~~lg~s~~~~~~i 56 (309)
.+.+..|+||.+++-.
T Consensus 6 ~~R~~~gltQ~elA~~ 21 (62)
T d2ppxa1 6 IIRRALKLTQEEFSAR 21 (62)
T ss_dssp HHHHHTTCCHHHHHHH
T ss_pred HHHHHcCCCHHHHHHH
Confidence 4677899999987754
No 10
>d2auwa1 a.35.1.10 (A:88-154) Hypothetical protein NE0471 C-terminal domain {Nitrosomonas europaea [TaxId: 915]}
Probab=3.85 E-value=2.6e+02 Score=17.35 Aligned_cols=17 Identities=12% Similarity=-0.136 Sum_probs=12.7
Q ss_pred HHHHHhhCCCHHHHHHH
Q 021692 40 PVIKSSLNYNQKQIARL 56 (309)
Q Consensus 40 ~~l~~~lg~s~~~~~~i 56 (309)
..+++..|+||.+++-.
T Consensus 7 k~~R~~~gltQ~elA~~ 23 (67)
T d2auwa1 7 GDWMHRNNLSLTTAAEA 23 (67)
T ss_dssp HHHHHHTTCCHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHH
Confidence 35677899999887653
Done!