Query 021693
Match_columns 309
No_of_seqs 177 out of 1197
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 04:57:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021693.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021693hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0656 ARA1 Aldo/keto reducta 100.0 2E-67 4.3E-72 458.1 29.3 261 1-295 4-267 (280)
2 KOG1577 Aldo/keto reductase fa 100.0 5.5E-65 1.2E-69 442.7 28.1 281 2-295 6-288 (300)
3 PRK11565 dkgA 2,5-diketo-D-glu 100.0 3.4E-60 7.4E-65 422.1 30.8 270 1-305 5-275 (275)
4 PRK11172 dkgB 2,5-diketo-D-glu 100.0 1.4E-59 3E-64 416.8 30.6 257 9-300 1-260 (267)
5 COG0667 Tas Predicted oxidored 100.0 1.5E-59 3.3E-64 423.7 28.5 261 4-293 6-310 (316)
6 KOG1575 Voltage-gated shaker-l 100.0 1.1E-58 2.4E-63 410.5 27.5 266 3-295 15-328 (336)
7 TIGR01293 Kv_beta voltage-depe 100.0 2.7E-57 5.8E-62 411.8 28.3 260 4-290 4-316 (317)
8 PRK10625 tas putative aldo-ket 100.0 2.3E-56 5E-61 410.3 30.0 284 4-299 6-346 (346)
9 PRK09912 L-glyceraldehyde 3-ph 100.0 3.7E-56 8.1E-61 408.5 29.9 265 5-295 19-336 (346)
10 cd06660 Aldo_ket_red Aldo-keto 100.0 3.1E-54 6.8E-59 386.6 29.5 259 5-290 5-285 (285)
11 PRK10376 putative oxidoreducta 100.0 1.2E-53 2.6E-58 383.2 28.6 253 2-292 9-288 (290)
12 PLN02587 L-galactose dehydroge 100.0 1.1E-53 2.4E-58 387.8 28.4 266 3-292 3-300 (314)
13 PF00248 Aldo_ket_red: Aldo/ke 100.0 6.9E-54 1.5E-58 384.0 25.3 253 13-291 1-282 (283)
14 PRK14863 bifunctional regulato 100.0 1.1E-52 2.4E-57 376.3 22.6 264 8-304 2-291 (292)
15 COG4989 Predicted oxidoreducta 100.0 2.9E-51 6.2E-56 342.4 18.9 262 2-294 3-295 (298)
16 KOG1576 Predicted oxidoreducta 100.0 1.1E-43 2.3E-48 299.1 22.5 274 4-303 27-332 (342)
17 COG1453 Predicted oxidoreducta 100.0 7.7E-44 1.7E-48 313.5 20.0 255 5-294 7-287 (391)
18 KOG3023 Glutamate-cysteine lig 98.6 1.4E-07 3E-12 79.6 7.4 74 136-209 153-227 (285)
19 PF07021 MetW: Methionine bios 89.7 2.9 6.3E-05 35.0 8.6 77 139-215 89-172 (193)
20 cd03319 L-Ala-DL-Glu_epimerase 81.9 39 0.00085 30.5 13.6 152 22-214 134-291 (316)
21 PF03102 NeuB: NeuB family; I 81.8 5.6 0.00012 34.7 6.9 114 21-166 53-184 (241)
22 PRK08392 hypothetical protein; 81.6 32 0.00069 29.2 17.6 180 25-246 15-209 (215)
23 PRK10558 alpha-dehydro-beta-de 80.5 25 0.00055 30.9 10.6 66 145-211 10-78 (256)
24 COG1748 LYS9 Saccharopine dehy 79.7 17 0.00037 34.1 9.6 79 22-112 77-159 (389)
25 PRK10128 2-keto-3-deoxy-L-rham 76.1 45 0.00098 29.5 10.9 102 145-277 9-114 (267)
26 cd01973 Nitrogenase_VFe_beta_l 73.9 87 0.0019 30.1 14.1 115 45-180 66-193 (454)
27 TIGR03239 GarL 2-dehydro-3-deo 72.4 50 0.0011 28.9 10.2 61 150-211 8-71 (249)
28 COG3623 SgaU Putative L-xylulo 72.2 54 0.0012 28.5 9.7 70 6-77 65-155 (287)
29 PRK08609 hypothetical protein; 70.2 1.2E+02 0.0026 30.1 16.3 183 25-246 350-553 (570)
30 COG2089 SpsE Sialic acid synth 70.1 88 0.0019 28.6 12.0 121 21-173 87-225 (347)
31 cd01965 Nitrogenase_MoFe_beta_ 69.3 1E+02 0.0023 29.1 13.4 114 46-180 62-187 (428)
32 COG2069 CdhD CO dehydrogenase/ 68.7 78 0.0017 28.5 10.3 101 92-214 159-263 (403)
33 COG4669 EscJ Type III secretor 68.1 25 0.00054 30.4 7.0 77 20-97 27-122 (246)
34 TIGR00381 cdhD CO dehydrogenas 68.1 82 0.0018 29.5 10.8 95 100-214 153-252 (389)
35 COG0159 TrpA Tryptophan syntha 67.6 89 0.0019 27.7 10.5 127 136-276 76-228 (265)
36 COG1140 NarY Nitrate reductase 66.8 3.8 8.3E-05 37.7 2.0 52 152-204 264-317 (513)
37 COG0761 lytB 4-Hydroxy-3-methy 64.7 1.1E+02 0.0023 27.5 11.4 107 153-273 159-278 (294)
38 PRK05414 urocanate hydratase; 60.3 31 0.00067 33.3 6.7 127 28-186 116-268 (556)
39 cd03174 DRE_TIM_metallolyase D 60.0 57 0.0012 28.3 8.3 97 87-209 22-135 (265)
40 TIGR01228 hutU urocanate hydra 59.2 32 0.00068 33.1 6.5 128 27-186 106-259 (545)
41 PRK05692 hydroxymethylglutaryl 58.9 64 0.0014 28.9 8.4 98 85-207 27-138 (287)
42 TIGR02026 BchE magnesium-proto 58.5 1.6E+02 0.0035 28.5 11.7 125 135-273 221-360 (497)
43 TIGR02932 vnfK_nitrog V-contai 58.3 1.8E+02 0.0039 28.0 13.1 127 35-181 54-198 (457)
44 cd01976 Nitrogenase_MoFe_alpha 58.0 1.7E+02 0.0037 27.7 13.9 115 46-179 79-202 (421)
45 PRK00164 moaA molybdenum cofac 57.4 1.5E+02 0.0032 26.8 16.4 130 21-174 49-183 (331)
46 PRK08195 4-hyroxy-2-oxovalerat 57.3 1.6E+02 0.0034 27.1 16.1 37 3-44 9-45 (337)
47 TIGR00216 ispH_lytB (E)-4-hydr 56.1 87 0.0019 28.0 8.6 114 144-272 146-273 (280)
48 TIGR02311 HpaI 2,4-dihydroxyhe 56.0 1.4E+02 0.003 26.1 10.4 99 147-277 5-108 (249)
49 PRK12581 oxaloacetate decarbox 55.0 2.1E+02 0.0045 27.7 16.6 120 16-165 97-217 (468)
50 PRK04452 acetyl-CoA decarbonyl 54.6 1.1E+02 0.0023 28.0 9.0 52 157-211 129-184 (319)
51 COG0635 HemN Coproporphyrinoge 54.4 1.1E+02 0.0023 29.1 9.5 75 79-164 200-276 (416)
52 PRK07945 hypothetical protein; 54.1 1.8E+02 0.0038 26.7 19.6 25 23-47 110-134 (335)
53 COG2185 Sbm Methylmalonyl-CoA 53.5 33 0.00072 27.3 4.9 74 154-241 17-92 (143)
54 COG1149 MinD superfamily P-loo 53.3 32 0.0007 30.5 5.3 51 162-214 201-251 (284)
55 TIGR00190 thiC thiamine biosyn 52.9 1.2E+02 0.0026 28.6 9.0 87 83-217 140-227 (423)
56 PF00809 Pterin_bind: Pterin b 52.9 60 0.0013 27.5 6.9 68 138-211 56-125 (210)
57 TIGR03822 AblA_like_2 lysine-2 52.6 1.8E+02 0.004 26.4 14.9 105 22-153 120-228 (321)
58 KOG0369 Pyruvate carboxylase [ 52.3 1.3E+02 0.0029 30.3 9.6 149 23-214 42-196 (1176)
59 PRK13796 GTPase YqeH; Provisio 52.2 2E+02 0.0043 26.7 12.1 115 21-167 54-176 (365)
60 PLN02746 hydroxymethylglutaryl 52.1 1.8E+02 0.004 26.9 10.3 99 84-207 68-180 (347)
61 PF01175 Urocanase: Urocanase; 51.7 45 0.00098 32.2 6.3 128 27-186 105-258 (546)
62 cd00739 DHPS DHPS subgroup of 51.4 1.7E+02 0.0037 25.7 10.3 68 138-210 61-128 (257)
63 cd01974 Nitrogenase_MoFe_beta 51.3 2.2E+02 0.0048 27.0 13.8 115 45-180 65-192 (435)
64 PRK01045 ispH 4-hydroxy-3-meth 51.3 1.3E+02 0.0029 27.1 9.0 109 151-273 155-276 (298)
65 COG4626 Phage terminase-like p 49.7 68 0.0015 31.4 7.3 76 135-210 409-484 (546)
66 cd07944 DRE_TIM_HOA_like 4-hyd 49.7 1.8E+02 0.004 25.6 11.0 107 83-208 19-128 (266)
67 PRK12360 4-hydroxy-3-methylbut 49.2 1.6E+02 0.0034 26.4 9.1 112 146-272 151-274 (281)
68 PRK00912 ribonuclease P protei 48.6 1.8E+02 0.0038 25.0 13.0 171 23-248 15-204 (237)
69 PF06506 PrpR_N: Propionate ca 48.1 43 0.00093 27.4 5.1 69 136-209 61-132 (176)
70 PRK05283 deoxyribose-phosphate 47.8 1.4E+02 0.0031 26.3 8.5 83 13-102 135-227 (257)
71 PRK13352 thiamine biosynthesis 47.6 1.6E+02 0.0035 27.8 9.1 88 82-217 142-230 (431)
72 TIGR03217 4OH_2_O_val_ald 4-hy 47.1 2.3E+02 0.005 26.0 16.0 37 3-44 8-44 (333)
73 cd00308 enolase_like Enolase-s 46.2 1.7E+02 0.0036 24.9 8.8 71 142-214 134-208 (229)
74 COG1751 Uncharacterized conser 44.6 1.7E+02 0.0037 23.7 9.6 77 138-214 12-95 (186)
75 cd03315 MLE_like Muconate lact 44.5 2.1E+02 0.0046 24.9 15.3 71 142-214 169-243 (265)
76 COG2987 HutU Urocanate hydrata 43.6 43 0.00093 31.8 4.8 90 67-186 165-268 (561)
77 PRK13361 molybdenum cofactor b 43.3 2.6E+02 0.0055 25.4 15.3 106 21-153 45-154 (329)
78 PF01118 Semialdhyde_dh: Semia 43.2 37 0.0008 25.8 3.8 28 21-48 74-101 (121)
79 TIGR01278 DPOR_BchB light-inde 43.2 2.4E+02 0.0052 27.5 10.2 114 46-179 66-192 (511)
80 PRK12331 oxaloacetate decarbox 43.0 3.1E+02 0.0068 26.3 10.7 114 86-239 28-163 (448)
81 cd01971 Nitrogenase_VnfN_like 42.6 3E+02 0.0066 26.0 11.0 111 46-181 67-192 (427)
82 TIGR03822 AblA_like_2 lysine-2 42.2 2.7E+02 0.0058 25.3 11.6 76 138-215 152-240 (321)
83 PF02401 LYTB: LytB protein; 41.9 1.4E+02 0.0031 26.7 7.7 113 145-272 146-274 (281)
84 cd03316 MR_like Mandelate race 41.6 2.8E+02 0.006 25.3 15.0 149 22-210 139-299 (357)
85 COG2040 MHT1 Homocysteine/sele 41.6 1.7E+02 0.0038 26.2 8.0 214 23-276 42-297 (300)
86 TIGR03569 NeuB_NnaB N-acetylne 40.8 2.9E+02 0.0063 25.3 11.0 115 21-167 73-207 (329)
87 PRK13602 putative ribosomal pr 40.5 83 0.0018 22.3 5.0 58 145-209 3-60 (82)
88 cd07943 DRE_TIM_HOA 4-hydroxy- 40.4 2.5E+02 0.0055 24.5 17.5 168 3-214 6-199 (263)
89 TIGR00735 hisF imidazoleglycer 40.4 2.5E+02 0.0054 24.4 9.7 63 143-205 189-253 (254)
90 PF11242 DUF2774: Protein of u 40.2 40 0.00087 22.5 2.9 22 231-252 15-36 (63)
91 PF01487 DHquinase_I: Type I 3 40.1 2.3E+02 0.005 24.0 10.1 80 19-105 70-151 (224)
92 TIGR00126 deoC deoxyribose-pho 40.1 2.3E+02 0.0051 24.1 8.7 79 16-100 124-205 (211)
93 PRK07535 methyltetrahydrofolat 40.0 2.6E+02 0.0057 24.6 10.6 74 139-214 55-128 (261)
94 PF02679 ComA: (2R)-phospho-3- 39.8 86 0.0019 27.4 5.8 77 23-109 83-169 (244)
95 cd00405 PRAI Phosphoribosylant 38.9 1.5E+02 0.0032 24.7 7.2 25 143-167 89-113 (203)
96 COG2949 SanA Uncharacterized m 38.8 1.8E+02 0.004 24.8 7.3 72 138-209 78-180 (235)
97 cd01966 Nitrogenase_NifN_1 Nit 38.5 1.6E+02 0.0034 28.0 7.9 114 46-180 62-189 (417)
98 cd00423 Pterin_binding Pterin 37.8 2.4E+02 0.0053 24.6 8.6 70 138-212 61-130 (258)
99 PRK07534 methionine synthase I 37.6 3.3E+02 0.0071 25.0 18.2 218 19-276 39-294 (336)
100 COG4130 Predicted sugar epimer 36.6 2.2E+02 0.0048 24.5 7.5 52 163-214 50-108 (272)
101 cd04740 DHOD_1B_like Dihydroor 36.5 3.1E+02 0.0066 24.4 14.4 165 21-202 99-285 (296)
102 KOG2367 Alpha-isopropylmalate 36.1 4.1E+02 0.009 25.8 11.1 86 21-109 201-288 (560)
103 cd03318 MLE Muconate Lactonizi 36.1 1.3E+02 0.0028 27.7 6.9 69 141-211 227-299 (365)
104 TIGR00289 conserved hypothetic 35.4 2.6E+02 0.0055 24.1 8.0 112 166-295 49-171 (222)
105 cd03322 rpsA The starvation se 35.4 1.3E+02 0.0027 27.9 6.7 69 141-211 202-274 (361)
106 cd01821 Rhamnogalacturan_acety 35.3 2.5E+02 0.0054 22.9 8.1 91 153-243 36-149 (198)
107 cd07943 DRE_TIM_HOA 4-hydroxy- 34.7 2E+02 0.0044 25.1 7.6 104 84-208 22-131 (263)
108 COG0773 MurC UDP-N-acetylmuram 34.1 20 0.00043 34.3 1.1 27 235-261 112-141 (459)
109 PRK14461 ribosomal RNA large s 33.8 3.9E+02 0.0085 25.0 9.4 80 135-214 251-353 (371)
110 TIGR00035 asp_race aspartate r 33.6 1.4E+02 0.0031 25.5 6.3 82 83-176 17-99 (229)
111 PRK09413 IS2 repressor TnpA; R 33.3 59 0.0013 24.8 3.5 41 21-61 13-54 (121)
112 TIGR01502 B_methylAsp_ase meth 33.1 4.3E+02 0.0093 25.0 9.9 70 140-211 279-357 (408)
113 CHL00076 chlB photochlorophyll 33.0 4.8E+02 0.01 25.5 12.9 113 47-179 67-197 (513)
114 TIGR01928 menC_lowGC/arch o-su 32.6 2E+02 0.0043 26.1 7.4 73 140-214 210-286 (324)
115 PF07287 DUF1446: Protein of u 32.5 1E+02 0.0022 28.7 5.4 88 141-242 11-100 (362)
116 cd01967 Nitrogenase_MoFe_alpha 32.3 4.2E+02 0.0091 24.7 12.0 111 46-179 68-190 (406)
117 KOG4175 Tryptophan synthase al 32.2 3.2E+02 0.0069 23.3 8.3 84 6-97 91-202 (268)
118 cd00945 Aldolase_Class_I Class 32.2 2.7E+02 0.0059 22.5 8.6 69 22-103 11-84 (201)
119 PRK07094 biotin synthase; Prov 32.2 3.8E+02 0.0082 24.1 11.9 120 136-273 70-202 (323)
120 PRK02901 O-succinylbenzoate sy 31.9 3.9E+02 0.0085 24.4 9.2 71 142-214 173-244 (327)
121 PRK00507 deoxyribose-phosphate 31.9 2E+02 0.0044 24.6 6.9 78 15-99 127-208 (221)
122 PF00682 HMGL-like: HMGL-like 31.7 3.2E+02 0.007 23.2 13.2 170 21-214 11-195 (237)
123 cd07944 DRE_TIM_HOA_like 4-hyd 31.6 3.6E+02 0.0078 23.7 13.3 128 3-173 4-146 (266)
124 PRK13958 N-(5'-phosphoribosyl) 31.5 2.3E+02 0.005 23.9 7.1 32 152-185 51-83 (207)
125 TIGR01862 N2-ase-Ialpha nitrog 31.3 2.6E+02 0.0057 26.6 8.3 111 46-179 98-221 (443)
126 PF01904 DUF72: Protein of unk 30.8 3.4E+02 0.0075 23.2 9.8 66 38-111 19-96 (230)
127 PF14871 GHL6: Hypothetical gl 30.7 48 0.001 25.9 2.6 21 192-212 47-67 (132)
128 TIGR02931 anfK_nitrog Fe-only 30.6 4.9E+02 0.011 25.0 13.9 114 45-179 72-199 (461)
129 KOG1549 Cysteine desulfurase N 30.4 4.9E+02 0.011 24.8 10.5 74 141-214 144-223 (428)
130 COG3215 PilZ Tfp pilus assembl 30.3 45 0.00098 24.8 2.2 59 30-95 26-106 (117)
131 PRK00087 4-hydroxy-3-methylbut 30.2 2.9E+02 0.0062 27.9 8.7 110 146-272 148-271 (647)
132 PRK03995 hypothetical protein; 29.8 2.2E+02 0.0047 25.3 6.9 82 9-101 180-265 (267)
133 PRK15072 bifunctional D-altron 29.8 3.7E+02 0.0081 25.2 9.0 69 141-211 245-317 (404)
134 COG0327 Uncharacterized conser 29.7 1E+02 0.0022 27.0 4.7 36 25-61 198-233 (250)
135 PLN02775 Probable dihydrodipic 29.6 4.1E+02 0.0089 23.8 8.6 72 88-187 67-138 (286)
136 cd03174 DRE_TIM_metallolyase D 29.1 3.7E+02 0.0081 23.1 14.9 141 3-172 3-153 (265)
137 PF06819 Arc_PepC: Archaeal Pe 28.6 1.4E+02 0.0031 22.5 4.7 69 64-155 37-105 (110)
138 PF13378 MR_MLE_C: Enolase C-t 28.6 85 0.0019 23.2 3.7 52 160-214 3-57 (111)
139 PF00155 Aminotran_1_2: Aminot 28.6 4.4E+02 0.0095 23.7 13.9 151 25-214 19-193 (363)
140 COG1358 RPL8A Ribosomal protei 28.5 1.5E+02 0.0032 22.7 4.8 67 135-207 9-75 (116)
141 PF01784 NIF3: NIF3 (NGG1p int 28.4 45 0.00097 28.9 2.3 32 28-60 203-234 (241)
142 TIGR02127 pyrF_sub2 orotidine 27.8 4.3E+02 0.0092 23.3 11.5 151 84-273 38-206 (261)
143 COG0821 gcpE 1-hydroxy-2-methy 27.6 2.8E+02 0.0061 25.5 7.1 67 139-205 60-126 (361)
144 cd07948 DRE_TIM_HCS Saccharomy 27.3 4.3E+02 0.0093 23.2 17.2 38 3-45 6-43 (262)
145 COG0108 RibB 3,4-dihydroxy-2-b 27.3 1.2E+02 0.0026 25.6 4.5 16 192-207 175-190 (203)
146 cd07948 DRE_TIM_HCS Saccharomy 27.2 4.3E+02 0.0094 23.2 11.1 95 85-209 23-132 (262)
147 PRK14455 ribosomal RNA large s 27.1 5E+02 0.011 24.0 9.1 79 136-214 243-338 (356)
148 PF00682 HMGL-like: HMGL-like 27.1 3.9E+02 0.0084 22.7 11.2 94 84-205 14-124 (237)
149 TIGR01286 nifK nitrogenase mol 27.1 3.4E+02 0.0074 26.6 8.3 120 44-180 121-252 (515)
150 COG1751 Uncharacterized conser 27.0 1.9E+02 0.004 23.4 5.2 67 25-99 15-85 (186)
151 PF14606 Lipase_GDSL_3: GDSL-l 27.0 3.6E+02 0.0079 22.3 7.4 101 7-110 32-146 (178)
152 cd01981 Pchlide_reductase_B Pc 27.0 5.4E+02 0.012 24.3 12.6 59 48-111 68-127 (430)
153 PRK01018 50S ribosomal protein 26.8 2.4E+02 0.0051 20.7 5.6 62 141-209 4-65 (99)
154 PRK14476 nitrogenase molybdenu 26.6 5.8E+02 0.013 24.5 10.5 114 45-179 72-199 (455)
155 COG1880 CdhB CO dehydrogenase/ 26.2 3.6E+02 0.0078 21.9 7.3 37 12-48 38-74 (170)
156 cd01968 Nitrogenase_NifE_I Nit 26.2 5.5E+02 0.012 24.1 11.0 111 45-179 66-188 (410)
157 TIGR01182 eda Entner-Doudoroff 26.1 4E+02 0.0088 22.5 8.0 60 141-207 46-106 (204)
158 cd03770 SR_TndX_transposase Se 25.9 1.3E+02 0.0029 23.4 4.4 44 86-151 54-97 (140)
159 COG1121 ZnuC ABC-type Mn/Zn tr 25.8 2.4E+02 0.0052 24.9 6.3 49 100-170 157-205 (254)
160 TIGR01496 DHPS dihydropteroate 25.7 4.6E+02 0.0099 23.0 10.5 64 140-210 62-126 (257)
161 TIGR00321 dhys deoxyhypusine s 25.4 5.1E+02 0.011 23.4 11.5 50 24-76 31-81 (301)
162 COG0626 MetC Cystathionine bet 25.4 5.1E+02 0.011 24.5 8.8 78 140-217 114-194 (396)
163 TIGR02329 propionate_PrpR prop 25.2 3.9E+02 0.0084 26.3 8.3 67 140-209 85-152 (526)
164 cd00959 DeoC 2-deoxyribose-5-p 25.1 2.9E+02 0.0062 23.1 6.6 78 15-98 122-202 (203)
165 PRK14017 galactonate dehydrata 24.9 3.6E+02 0.0078 25.0 7.9 68 142-211 217-288 (382)
166 PRK12323 DNA polymerase III su 24.9 4.9E+02 0.011 26.6 8.9 66 83-173 107-174 (700)
167 cd00248 Mth938-like Mth938-lik 24.7 3E+02 0.0065 20.5 6.1 52 159-210 36-87 (109)
168 COG1831 Predicted metal-depend 24.7 3.8E+02 0.0082 23.9 7.2 67 137-203 105-185 (285)
169 PRK04165 acetyl-CoA decarbonyl 24.6 6.4E+02 0.014 24.3 9.8 67 139-210 141-209 (450)
170 TIGR01304 IMP_DH_rel_2 IMP deh 24.5 5.5E+02 0.012 24.0 8.8 68 140-207 120-193 (369)
171 PF02679 ComA: (2R)-phospho-3- 24.4 2.6E+02 0.0057 24.4 6.3 100 84-207 22-131 (244)
172 PRK06361 hypothetical protein; 24.3 4.2E+02 0.0091 22.1 15.6 184 24-250 10-200 (212)
173 cd00408 DHDPS-like Dihydrodipi 24.2 4.9E+02 0.011 22.8 11.1 29 20-48 14-42 (281)
174 TIGR00262 trpA tryptophan synt 24.2 4.9E+02 0.011 22.8 8.1 74 136-211 69-150 (256)
175 TIGR02026 BchE magnesium-proto 24.0 6.7E+02 0.014 24.3 11.1 101 83-211 225-345 (497)
176 PRK06740 histidinol-phosphatas 23.7 5.6E+02 0.012 23.4 13.2 23 24-46 61-83 (331)
177 cd05560 Xcc1710_like Xcc1710_l 23.7 3.2E+02 0.0069 20.4 6.0 50 160-210 38-87 (109)
178 PF11239 DUF3040: Protein of u 23.6 40 0.00086 23.9 0.9 23 278-300 2-24 (82)
179 PRK02910 light-independent pro 23.5 4.1E+02 0.009 26.0 8.2 113 47-180 67-193 (519)
180 TIGR03677 rpl7ae 50S ribosomal 23.3 3.4E+02 0.0073 20.6 6.5 65 137-207 10-74 (117)
181 PF00388 PI-PLC-X: Phosphatidy 23.3 63 0.0014 25.4 2.1 17 28-44 30-46 (146)
182 PRK06015 keto-hydroxyglutarate 23.3 2.6E+02 0.0057 23.6 5.9 59 141-206 42-101 (201)
183 PRK10200 putative racemase; Pr 23.3 2.9E+02 0.0062 23.7 6.4 82 83-176 17-99 (230)
184 PRK10799 metal-binding protein 23.2 1.2E+02 0.0026 26.4 4.1 31 30-61 200-230 (247)
185 PF08282 Hydrolase_3: haloacid 23.2 3.9E+02 0.0085 22.1 7.3 72 137-210 16-103 (254)
186 cd03323 D-glucarate_dehydratas 23.1 3E+02 0.0065 25.8 6.9 72 141-214 249-324 (395)
187 cd03325 D-galactonate_dehydrat 23.0 4.4E+02 0.0096 24.1 8.0 67 141-209 215-285 (352)
188 PRK08123 histidinol-phosphatas 22.7 5.2E+02 0.011 22.6 10.8 23 24-46 19-41 (270)
189 KOG3206 Alpha-tubulin folding 22.6 43 0.00094 28.3 1.0 14 36-49 199-212 (234)
190 PRK14457 ribosomal RNA large s 22.6 6.1E+02 0.013 23.4 15.3 150 49-213 163-330 (345)
191 cd02801 DUS_like_FMN Dihydrour 22.6 4.6E+02 0.01 22.0 9.7 125 22-176 65-207 (231)
192 PF07994 NAD_binding_5: Myo-in 22.5 2.2E+02 0.0049 25.6 5.7 136 83-256 132-272 (295)
193 PRK01222 N-(5'-phosphoribosyl) 22.5 3.8E+02 0.0082 22.7 6.9 32 152-185 53-85 (210)
194 PRK07003 DNA polymerase III su 22.4 9.1E+02 0.02 25.3 13.2 59 140-204 134-197 (830)
195 COG3653 N-acyl-D-aspartate/D-g 22.2 7.1E+02 0.015 24.0 15.9 78 27-110 185-278 (579)
196 PRK02714 O-succinylbenzoate sy 22.2 5.9E+02 0.013 23.0 8.7 71 142-214 206-277 (320)
197 PRK04175 rpl7ae 50S ribosomal 22.1 3.5E+02 0.0075 20.8 6.0 63 138-206 15-77 (122)
198 PF14615 Rsa3: Ribosome-assemb 22.0 68 0.0015 20.3 1.6 18 25-42 30-47 (47)
199 cd00338 Ser_Recombinase Serine 21.9 1.9E+02 0.004 22.0 4.6 52 85-159 50-101 (137)
200 cd07940 DRE_TIM_IPMS 2-isoprop 21.8 5.4E+02 0.012 22.5 17.2 43 3-50 4-46 (268)
201 PF09012 FeoC: FeoC like trans 21.6 1.3E+02 0.0027 20.3 3.1 27 136-162 26-52 (69)
202 TIGR01686 FkbH FkbH-like domai 21.2 4.7E+02 0.01 23.5 7.7 65 137-204 32-102 (320)
203 PRK08247 cystathionine gamma-s 21.1 6E+02 0.013 23.3 8.5 60 154-214 116-178 (366)
204 PF05049 IIGP: Interferon-indu 21.1 3.8E+02 0.0082 25.1 7.0 57 49-111 129-201 (376)
205 cd00740 MeTr MeTr subgroup of 21.1 5.6E+02 0.012 22.4 11.7 59 156-214 72-131 (252)
206 TIGR02534 mucon_cyclo muconate 21.1 3.4E+02 0.0074 25.0 6.9 71 142-214 227-301 (368)
207 PF04414 tRNA_deacylase: D-ami 21.0 2.8E+02 0.006 23.7 5.6 78 10-100 130-211 (213)
208 cd04743 NPD_PKS 2-Nitropropane 20.9 6.5E+02 0.014 23.0 8.6 60 150-209 25-89 (320)
209 PF05990 DUF900: Alpha/beta hy 20.9 5.4E+02 0.012 22.0 9.8 88 67-165 16-103 (233)
210 cd00952 CHBPH_aldolase Trans-o 20.8 6.2E+02 0.013 22.7 9.5 74 140-214 65-148 (309)
211 COG3737 Uncharacterized conser 20.7 2.2E+02 0.0049 21.9 4.4 48 163-210 56-104 (127)
212 PRK00730 rnpA ribonuclease P; 20.6 4.3E+02 0.0094 20.9 6.7 45 67-111 46-93 (138)
213 smart00148 PLCXc Phospholipase 20.5 88 0.0019 24.4 2.4 19 26-44 30-48 (135)
214 KOG1056 Glutamate-gated metabo 20.5 8.7E+02 0.019 25.6 9.9 71 22-98 178-249 (878)
215 PRK08776 cystathionine gamma-s 20.5 7.1E+02 0.015 23.3 11.2 73 141-214 112-187 (405)
216 cd03317 NAAAR N-acylamino acid 20.4 5.2E+02 0.011 23.6 7.9 71 141-213 216-290 (354)
217 cd01306 PhnM PhnM is believed 20.4 1.4E+02 0.003 27.3 4.0 71 138-209 94-183 (325)
218 COG3033 TnaA Tryptophanase [Am 20.2 2.7E+02 0.006 26.0 5.7 46 162-207 169-224 (471)
219 COG0084 TatD Mg-dependent DNas 20.2 2.8E+02 0.006 24.4 5.7 23 227-249 223-245 (256)
220 cd04742 NPD_FabD 2-Nitropropan 20.2 6.1E+02 0.013 24.1 8.2 64 146-210 32-103 (418)
221 PRK15408 autoinducer 2-binding 20.2 6.6E+02 0.014 22.8 10.1 75 67-170 22-97 (336)
222 PRK14041 oxaloacetate decarbox 20.1 6.8E+02 0.015 24.2 8.7 116 86-238 27-161 (467)
No 1
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=2e-67 Score=458.11 Aligned_cols=261 Identities=50% Similarity=0.879 Sum_probs=243.7
Q ss_pred CeeecCCCCcccccceeccccChhh-HHHHHHHHHHcCCcEEecCCCCCCHHHHHHHHHHHHhcCCCCCccEEEEecCCC
Q 021693 1 MAITLNNGFKMPIIGLGVWRMDESN-IRDLIINAIKIGYRHIDCAADYRNEAEVGEALAEAFSTGLVKREDLFITTKLWN 79 (309)
Q Consensus 1 ~~~~l~tg~~vs~lg~G~~~~~~~~-~~~~l~~A~~~Gin~~DTA~~YgsE~~lG~~l~~~~~~~~~~R~~~~i~tK~~~ 79 (309)
+++++++|.+||.||||||+++... +.+.+.+|++.|+|+||||..||||+.+|++|++ .+ ++|+++||+||+|+
T Consensus 4 ~~~~l~~g~~iP~iGlGt~~~~~~~~~~~av~~Al~~Gyr~IDTA~~YgnE~~VG~aI~~---s~-v~ReelFittKvw~ 79 (280)
T COG0656 4 TKVTLNNGVEIPAIGLGTWQIGDDEWAVRAVRAALELGYRLIDTAEIYGNEEEVGEAIKE---SG-VPREELFITTKVWP 79 (280)
T ss_pred ceeecCCCCcccCcceEeeecCCchhHHHHHHHHHHhCcceEecHhHhcCHHHHHHHHHh---cC-CCHHHeEEEeecCC
Confidence 3578999999999999999998877 9999999999999999999999999999999998 55 79999999999998
Q ss_pred CCc--chHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCCeeEE
Q 021693 80 SDH--GHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSI 157 (309)
Q Consensus 80 ~~~--~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~i 157 (309)
.+. +.+.+++++||+|||+||+|||+||||... . ...+.++|++|++++++||||+|
T Consensus 80 ~~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~-~--------------------~~~~~etw~alE~l~~~G~ir~I 138 (280)
T COG0656 80 SDLGYDETLKALEASLKRLGLDYVDLYLIHWPVPN-K--------------------YVVIEETWKALEELVDEGLIRAI 138 (280)
T ss_pred ccCCcchHHHHHHHHHHHhCCCceeEEEECCCCCc-c--------------------CccHHHHHHHHHHHHhcCCccEE
Confidence 875 999999999999999999999999999651 0 12278999999999999999999
Q ss_pred eecCCCHHHHHHHHHhcCCCceEEeeccCCCCCchHHHHHHHHcCCeEEEeccCCCCCCCCcccCCccCCCcHHHHHHHH
Q 021693 158 GISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTPLGGAVANTEWFGTVSCLDDPVLKGLAE 237 (309)
Q Consensus 158 Gvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~l~~ia~ 237 (309)
|||||+..+|+++++..++.|+++|++||++.++.+++++|+++||.+++||||+.|. .++..+.+.+||+
T Consensus 139 GVSNF~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~el~~~~~~~gI~v~AysPL~~g~---------~l~~~~~l~~Ia~ 209 (280)
T COG0656 139 GVSNFGVEHLEELLSLAKVKPAVNQIEYHPYLRQPELLPFCQRHGIAVEAYSPLAKGG---------KLLDNPVLAEIAK 209 (280)
T ss_pred EeeCCCHHHHHHHHHhcCCCCceEEEEeccCCCcHHHHHHHHHcCCEEEEECCccccc---------ccccChHHHHHHH
Confidence 9999999999999999999999999999999999899999999999999999999762 1678899999999
Q ss_pred HcCCCHHHHHHHHHhcCCcEEecCCCChhHHHHhhccccccCCHHHHHHHHchhccCc
Q 021693 238 KYKRTVAQTVLRWGIQRNTAVIPKTSKLERLEENFKVFDFELSKEDMDVIKSIDRKYR 295 (309)
Q Consensus 238 ~~~~s~aq~al~~~l~~~~~vi~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~~~~~~ 295 (309)
+||.|++|++|+|++++|+++||.+++++|+++|++++++.||++||++|+++.....
T Consensus 210 k~g~t~AQv~L~W~i~~gv~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~~ 267 (280)
T COG0656 210 KYGKTPAQVALRWHIQRGVIVIPKSTTPERIRENLAAFDFELSEEDMAAIDALDRGYG 267 (280)
T ss_pred HhCCCHHHHHHHHHHhCCcEEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhhccccC
Confidence 9999999999999999999999999999999999999999999999999999998653
No 2
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=5.5e-65 Score=442.71 Aligned_cols=281 Identities=53% Similarity=0.882 Sum_probs=255.6
Q ss_pred eeecCCCCcccccceeccccChhhHHHHHHHHHHcCCcEEecCCCCCCHHHHHHHHHHHHhcCCCCCccEEEEecCCCC-
Q 021693 2 AITLNNGFKMPIIGLGVWRMDESNIRDLIINAIKIGYRHIDCAADYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNS- 80 (309)
Q Consensus 2 ~~~l~tg~~vs~lg~G~~~~~~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~- 80 (309)
+++|++|.++|.||||||+.+.+++.+.+..|++.|+|+||||..||||..+|++|++++..+.++|+++||+||+|+.
T Consensus 6 ~~~Ln~G~~mP~iGlGTw~~~~~~~~~aV~~Al~~GYRHIDtA~~Y~NE~evG~aik~~i~~~~v~RediFiTSKlw~~~ 85 (300)
T KOG1577|consen 6 TVKLNNGFKMPIIGLGTWQSPPGQVAEAVKAAIKAGYRHIDTAHVYGNEKEVGEAIKELLAEGGVKREDIFITSKLWPTD 85 (300)
T ss_pred eEeccCCCccceeeeEecccChhhHHHHHHHHHHhCcceeechhhhCChHHHHHHHHHHhhhCCcchhhheeeeccCccc
Confidence 4789999999999999999988999999999999999999999999999999999999998777899999999999986
Q ss_pred -CcchHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCCeeEEee
Q 021693 81 -DHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGI 159 (309)
Q Consensus 81 -~~~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGv 159 (309)
.++.++.++++||++||+||+|+|++|||-...+ ..+.+..+....+ ..+..++|++|++++++|++|+|||
T Consensus 86 ~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~------~~~~~~~~~~~~~-~~~~~~tW~amE~~~~~Gl~rsIGV 158 (300)
T KOG1577|consen 86 HAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKD------SFPKDENGKVNYD-DVDRIETWKAMEKLVDEGLVRSIGV 158 (300)
T ss_pred cChhhHHHHHHHHHHHhChhhhheeeEecccccCC------CCCcccccccccc-cchHHHHHHHHHHHHHcCCceEeee
Confidence 4599999999999999999999999999987532 1111222222222 4578899999999999999999999
Q ss_pred cCCCHHHHHHHHHhcCCCceEEeeccCCCCCchHHHHHHHHcCCeEEEeccCCCCCCCCcccCCccCCCcHHHHHHHHHc
Q 021693 160 SNYDIFLTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTPLGGAVANTEWFGTVSCLDDPVLKGLAEKY 239 (309)
Q Consensus 160 s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~l~~ia~~~ 239 (309)
|||+..++++++..++++|.++|++++|+.++..++++|+++||.|.|||||+.+-- .. +++.++.+.+||++|
T Consensus 159 SNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q~~L~~fCk~~~I~v~AYSpLg~~~~-----~~-~ll~~~~l~~iA~K~ 232 (300)
T KOG1577|consen 159 SNFNIKQLEELLNLAKIKPAVNQVECHPYLQQKKLVEFCKSKGIVVTAYSPLGSPGR-----GS-DLLEDPVLKEIAKKY 232 (300)
T ss_pred ecCCHHHHHHHHhcCCCCCccceeeccCCcChHHHHHHHhhCCcEEEEecCCCCCCC-----cc-ccccCHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999832 11 678889999999999
Q ss_pred CCCHHHHHHHHHhcCCcEEecCCCChhHHHHhhccccccCCHHHHHHHHchhccCc
Q 021693 240 KRTVAQTVLRWGIQRNTAVIPKTSKLERLEENFKVFDFELSKEDMDVIKSIDRKYR 295 (309)
Q Consensus 240 ~~s~aq~al~~~l~~~~~vi~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~~~~~~ 295 (309)
+.|++|++|||++++|++|||.++++++++||+.++++.||++|++.|++...+.|
T Consensus 233 ~kt~aQIlLrw~~q~g~~vipKS~~~~Ri~eN~~vfdf~Lt~ed~~~i~~~~~~~r 288 (300)
T KOG1577|consen 233 NKTPAQILLRWALQRGVSVIPKSSNPERIKENFKVFDFELTEEDMKKLDSLNSNER 288 (300)
T ss_pred CCCHHHHHHHHHHhCCcEEEeccCCHHHHHHHHhhccccCCHHHHHHHhhccccce
Confidence 99999999999999999999999999999999999999999999999998888775
No 3
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=3.4e-60 Score=422.07 Aligned_cols=270 Identities=42% Similarity=0.729 Sum_probs=243.6
Q ss_pred CeeecCCCCcccccceeccccChhhHHHHHHHHHHcCCcEEecCCCCCCHHHHHHHHHHHHhcCCCCCccEEEEecCCCC
Q 021693 1 MAITLNNGFKMPIIGLGVWRMDESNIRDLIINAIKIGYRHIDCAADYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNS 80 (309)
Q Consensus 1 ~~~~l~tg~~vs~lg~G~~~~~~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~ 80 (309)
+++++++|+.||+||||||+++.+++.++|++|++.|||+||||+.||+|+.+|++|+. .+ ++|++++|+||++..
T Consensus 5 ~~~~l~~g~~v~~lglG~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~---~~-~~R~~~~i~tK~~~~ 80 (275)
T PRK11565 5 TVIKLQDGNVMPQLGLGVWQASNEEVITAIHKALEVGYRSIDTAAIYKNEEGVGKALKE---AS-VAREELFITTKLWND 80 (275)
T ss_pred ceEEcCCCCccCCcceECccCCHHHHHHHHHHHHHhCCCEEEchhhhCCHHHHHHHHHH---cC-CCHHHEEEEEEecCc
Confidence 35678999999999999999999999999999999999999999999999999999986 44 469999999999877
Q ss_pred CcchHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCCeeEEeec
Q 021693 81 DHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIS 160 (309)
Q Consensus 81 ~~~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs 160 (309)
+++.+++++++||+|||+||||+|++|||+.. .....++|++|++|+++|+||+||||
T Consensus 81 ~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~----------------------~~~~~~~~~~l~~l~~~G~ir~iGvS 138 (275)
T PRK11565 81 DHKRPREALEESLKKLQLDYVDLYLMHWPVPA----------------------IDHYVEAWKGMIELQKEGLIKSIGVC 138 (275)
T ss_pred chHHHHHHHHHHHHHhCCCceEEEEecCCCCC----------------------cCcHHHHHHHHHHHHHcCCeeEEeec
Confidence 77899999999999999999999999998651 22357899999999999999999999
Q ss_pred CCCHHHHHHHHHhcCCCceEEeeccCCCCCchHHHHHHHHcCCeEEEeccCCCCCCCCcccCCccCCCcHHHHHHHHHcC
Q 021693 161 NYDIFLTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTPLGGAVANTEWFGTVSCLDDPVLKGLAEKYK 240 (309)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~l~~ia~~~~ 240 (309)
||+++++++++...++.|.++|++++++.++.+++++|+++||++++|+||++|.. ..+..+.+.++|+++|
T Consensus 139 n~~~~~l~~~~~~~~v~~~~~Q~~~~~~~~~~~~~~~~~~~~i~~~a~spl~~G~~--------~~~~~~~l~~ia~~~g 210 (275)
T PRK11565 139 NFQIHHLQRLIDETGVTPVINQIELHPLMQQRQLHAWNATHKIQTESWSPLAQGGK--------GVFDQKVIRDLADKYG 210 (275)
T ss_pred cCCHHHHHHHHHhCCCCceeeeeecCCccchHHHHHHHHHCCCEEEEEccCCCCCc--------ccccCHHHHHHHHHhC
Confidence 99999999998887788999999999998888899999999999999999997731 1234588999999999
Q ss_pred CCHHHHHHHHHhcCCcEEecCCCChhHHHHhhccccccCCHHHHHHHHchhccCccC-CCCcccCC
Q 021693 241 RTVAQTVLRWGIQRNTAVIPKTSKLERLEENFKVFDFELSKEDMDVIKSIDRKYRTN-QPARFWGI 305 (309)
Q Consensus 241 ~s~aq~al~~~l~~~~~vi~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~~~~~~~~-~~~~~w~~ 305 (309)
+|++|+||+|+++++.++|||+++++|+++|+++++++|+++++++|+++....++. .|. .||.
T Consensus 211 ~s~aq~aL~w~l~~~~~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~~~~~~~~~-~~~~ 275 (275)
T PRK11565 211 KTPAQIVIRWHLDSGLVVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQGKRLGPDPD-QFGG 275 (275)
T ss_pred CCHHHHHHHHHHcCCCEeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhcccCCcCCCcc-ccCC
Confidence 999999999999999999999999999999999999999999999999999877765 333 4763
No 4
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=1.4e-59 Score=416.78 Aligned_cols=257 Identities=39% Similarity=0.659 Sum_probs=231.3
Q ss_pred CcccccceeccccChhhHHHHHHHHHHcCCcEEecCCCCCCHHHHHHHHHHHHhcCCCCCccEEEEecCCCC--CcchHH
Q 021693 9 FKMPIIGLGVWRMDESNIRDLIINAIKIGYRHIDCAADYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNS--DHGHVL 86 (309)
Q Consensus 9 ~~vs~lg~G~~~~~~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~--~~~~i~ 86 (309)
++||+||||||+++.+++.+++++|++.|||+||||+.||+|+.+|++|+. .+ ++|++++|+||++.. +++.++
T Consensus 1 ~~vs~lglGt~~~~~~~~~~~i~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~---~~-~~R~~v~i~TK~~~~~~~~~~~~ 76 (267)
T PRK11172 1 MSIPAFGLGTFRLKDQVVIDSVKTALELGYRAIDTAQIYDNEAAVGQAIAE---SG-VPRDELFITTKIWIDNLAKDKLI 76 (267)
T ss_pred CCCCCEeeEccccChHHHHHHHHHHHHcCCCEEEccchhCCHHHHHHHHHH---cC-CChhHeEEEEEeCCCCCCHHHHH
Confidence 369999999999988899999999999999999999999999999999986 44 479999999998643 358899
Q ss_pred HHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCCeeEEeecCCCHHH
Q 021693 87 EACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGISNYDIFL 166 (309)
Q Consensus 87 ~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~ 166 (309)
+++++||+|||+||||+|++|||+... ..+..++|++|++|+++||||+||||||+.++
T Consensus 77 ~~~~~SL~rL~~d~iDl~~lH~~~~~~---------------------~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~ 135 (267)
T PRK11172 77 PSLKESLQKLRTDYVDLTLIHWPSPND---------------------EVSVEEFMQALLEAKKQGLTREIGISNFTIAL 135 (267)
T ss_pred HHHHHHHHHhCCCceEEEEeCCCCCCC---------------------CCCHHHHHHHHHHHHHCCCCCEEEEccCCHHH
Confidence 999999999999999999999986410 23577899999999999999999999999999
Q ss_pred HHHHHHhcCC-CceEEeeccCCCCCchHHHHHHHHcCCeEEEeccCCCCCCCCcccCCccCCCcHHHHHHHHHcCCCHHH
Q 021693 167 TRDCLAYSKV-KPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTPLGGAVANTEWFGTVSCLDDPVLKGLAEKYKRTVAQ 245 (309)
Q Consensus 167 l~~~~~~~~~-~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~l~~ia~~~~~s~aq 245 (309)
++++++..+. ++.++|++||++.++.+++++|+++||++++|+||++|.+ ...+.+.++|+++|+|++|
T Consensus 136 l~~~~~~~~~~~~~~~Q~~~~~~~~~~~ll~~~~~~gi~v~a~spl~~G~~----------~~~~~l~~~a~~~~~s~aq 205 (267)
T PRK11172 136 MKQAIAAVGAENIATNQIELSPYLQNRKVVAFAKEHGIHVTSYMTLAYGKV----------LKDPVIARIAAKHNATPAQ 205 (267)
T ss_pred HHHHHHhcCCCCCeEEeeecCCCCCcHHHHHHHHHCCCEEEEECCCCCCcc----------cCCHHHHHHHHHhCCCHHH
Confidence 9999887654 6899999999999888999999999999999999999942 3347899999999999999
Q ss_pred HHHHHHhcCCcEEecCCCChhHHHHhhccccccCCHHHHHHHHchhccCccCCCC
Q 021693 246 TVLRWGIQRNTAVIPKTSKLERLEENFKVFDFELSKEDMDVIKSIDRKYRTNQPA 300 (309)
Q Consensus 246 ~al~~~l~~~~~vi~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~~~~~~~~~~~ 300 (309)
+||+|++++|+++|||+++++|+++|+++++++||++++++|+++..+.+...|.
T Consensus 206 val~w~l~~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~~~~~~~~ 260 (267)
T PRK11172 206 VILAWAMQLGYSVIPSSTKRENLASNLLAQDLQLDAEDMAAIAALDRNGRLVSPE 260 (267)
T ss_pred HHHHHHHhCCCEeecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhccCCccCCcc
Confidence 9999999999999999999999999999999999999999999998765544444
No 5
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=1.5e-59 Score=423.71 Aligned_cols=261 Identities=31% Similarity=0.469 Sum_probs=230.6
Q ss_pred ecCCCCcccccceeccccC-------hhhHHHHHHHHHHcCCcEEecCCCCC---CHHHHHHHHHHHHhcCCCCCccEEE
Q 021693 4 TLNNGFKMPIIGLGVWRMD-------ESNIRDLIINAIKIGYRHIDCAADYR---NEAEVGEALAEAFSTGLVKREDLFI 73 (309)
Q Consensus 4 ~l~tg~~vs~lg~G~~~~~-------~~~~~~~l~~A~~~Gin~~DTA~~Yg---sE~~lG~~l~~~~~~~~~~R~~~~i 73 (309)
.+++|++||+||||||.+. .+++.++|++|+++|||+||||+.|| ||+++|++|+. .+ .|++++|
T Consensus 6 lG~~gl~vs~lglG~~~~g~~~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~---~~--~Rd~vvI 80 (316)
T COG0667 6 LGRSGLKVSPLGLGTMTLGGDTDDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKE---RG--RRDKVVI 80 (316)
T ss_pred cCCCCceecceeeeccccCCCCCchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhc---cC--CCCeEEE
Confidence 4568999999999998854 23566799999999999999999998 79999999998 33 2999999
Q ss_pred EecCCCC------------CcchHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHH
Q 021693 74 TTKLWNS------------DHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETT 141 (309)
Q Consensus 74 ~tK~~~~------------~~~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (309)
+||++.. ++++++++++.||+||||||||+||+|||+. ..+..++
T Consensus 81 aTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~-----------------------~~p~~e~ 137 (316)
T COG0667 81 ATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDP-----------------------ETPIEET 137 (316)
T ss_pred EEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCC-----------------------CCCHHHH
Confidence 9999432 3479999999999999999999999999987 6778899
Q ss_pred HHHHHHHHHCCCeeEEeecCCCHHHHHHHHHhcCCCceEEeeccCCCCCc--hHHHHHHHHcCCeEEEeccCCCCCCCCc
Q 021693 142 WHAMEDLVSMGLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQR--DSLVKFCQKHGICVTAHTPLGGAVANTE 219 (309)
Q Consensus 142 ~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~ll~~~~~~gi~v~a~~pl~~G~l~~~ 219 (309)
+.+|.+|+++||||+||+||++++++.++++.. .+++++|..||++.++ ..++++|+++||++++|+||++|+|+++
T Consensus 138 ~~aL~~l~~~G~ir~iG~S~~~~~~i~~a~~~~-~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk 216 (316)
T COG0667 138 LEALDELVREGKIRYIGVSNYSAEQIAEALAVA-APIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGK 216 (316)
T ss_pred HHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhc-CCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccCCC
Confidence 999999999999999999999999999999886 6779999999999864 4599999999999999999999999987
Q ss_pred ccCCc--------cCCC----------cHHHHHHHHHcCCCHHHHHHHHHhcCC--cEEecCCCChhHHHHhhccccccC
Q 021693 220 WFGTV--------SCLD----------DPVLKGLAEKYKRTVAQTVLRWGIQRN--TAVIPKTSKLERLEENFKVFDFEL 279 (309)
Q Consensus 220 ~~~~~--------~~~~----------~~~l~~ia~~~~~s~aq~al~~~l~~~--~~vi~g~~~~~~l~~n~~~~~~~L 279 (309)
+.... +.+. ...++++|+++|+|++|+||+|++++| +++|+|+++++||++|+++++..|
T Consensus 217 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L 296 (316)
T COG0667 217 YLPGPEGSRASELPRFQRELTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKL 296 (316)
T ss_pred cCCCcchhhccccccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCC
Confidence 65411 1111 145889999999999999999999997 699999999999999999999999
Q ss_pred CHHHHHHHHchhcc
Q 021693 280 SKEDMDVIKSIDRK 293 (309)
Q Consensus 280 ~~~~~~~l~~~~~~ 293 (309)
+++++++|++....
T Consensus 297 ~~~~~~~l~~~~~~ 310 (316)
T COG0667 297 SEEELAALDEISAE 310 (316)
T ss_pred CHHHHHHHHHHhhh
Confidence 99999999988764
No 6
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=1.1e-58 Score=410.47 Aligned_cols=266 Identities=29% Similarity=0.431 Sum_probs=236.6
Q ss_pred eec-CCCCcccccceeccc-------cChhhHHHHHHHHHHcCCcEEecCCCCC---CHHHHHHHHHHHHhcCCCCCccE
Q 021693 3 ITL-NNGFKMPIIGLGVWR-------MDESNIRDLIINAIKIGYRHIDCAADYR---NEAEVGEALAEAFSTGLVKREDL 71 (309)
Q Consensus 3 ~~l-~tg~~vs~lg~G~~~-------~~~~~~~~~l~~A~~~Gin~~DTA~~Yg---sE~~lG~~l~~~~~~~~~~R~~~ 71 (309)
+++ ++|++||++|||||. .+++++.+++++|+++|+|+||||++|| ||..+|++|++ .+ .+|+++
T Consensus 15 ~~lg~~gl~Vs~lglG~m~~~~~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~---~~-~~R~~v 90 (336)
T KOG1575|consen 15 RKLGNSGLKVSPLGLGCMGWTTFGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKS---RG-WRRDKV 90 (336)
T ss_pred eeccCCCceecceeecceeeeccccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHh---cC-CcCCcE
Confidence 444 567999999999933 5889999999999999999999999998 69999999998 43 379999
Q ss_pred EEEecCCCCC---------cchHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHH
Q 021693 72 FITTKLWNSD---------HGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTW 142 (309)
Q Consensus 72 ~i~tK~~~~~---------~~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (309)
+|+||++... ..++...++.|++|||++|||+||+||+|. ..+.++++
T Consensus 91 viaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~-----------------------~~piee~m 147 (336)
T KOG1575|consen 91 VIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDP-----------------------MVPIEETM 147 (336)
T ss_pred EEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCC-----------------------CCCHHHHH
Confidence 9999984322 278899999999999999999999999887 77899999
Q ss_pred HHHHHHHHCCCeeEEeecCCCHHHHHHHHHhcCCCceEEeeccCCCCCc---hHHHHHHHHcCCeEEEeccCCCCCCCCc
Q 021693 143 HAMEDLVSMGLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQR---DSLVKFCQKHGICVTAHTPLGGAVANTE 219 (309)
Q Consensus 143 ~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~ll~~~~~~gi~v~a~~pl~~G~l~~~ 219 (309)
++|.+++++|||++||+|+++++++.++...+.++++++|+.||++.++ .+++++|++.||++++||||++|+||++
T Consensus 148 ~aL~~lve~Gki~yiGlSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk 227 (336)
T KOG1575|consen 148 RALTDLVEQGKIRYWGLSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGK 227 (336)
T ss_pred HHHHHHHhcCceEEEEeccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccC
Confidence 9999999999999999999999999999999988899999999999886 5699999999999999999999999986
Q ss_pred ccCCc---------------cCC--------CcHHHHHHHHHcCCCHHHHHHHHHhcCC--cEEecCCCChhHHHHhhcc
Q 021693 220 WFGTV---------------SCL--------DDPVLKGLAEKYKRTVAQTVLRWGIQRN--TAVIPKTSKLERLEENFKV 274 (309)
Q Consensus 220 ~~~~~---------------~~~--------~~~~l~~ia~~~~~s~aq~al~~~l~~~--~~vi~g~~~~~~l~~n~~~ 274 (309)
+.... +.. ..+.+.++|+++|+|++|+||+|+++++ ++||||+++++|++||+++
T Consensus 228 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~A 307 (336)
T KOG1575|consen 228 YKLGEDSRNGDKRFQFLGLSPQTEEGDKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGA 307 (336)
T ss_pred cccccccccccccccccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhh
Confidence 54221 011 0145889999999999999999999987 7999999999999999999
Q ss_pred ccccCCHHHHHHHHchhccCc
Q 021693 275 FDFELSKEDMDVIKSIDRKYR 295 (309)
Q Consensus 275 ~~~~L~~~~~~~l~~~~~~~~ 295 (309)
+...||++++.+|+++.+...
T Consensus 308 l~~~Lt~e~~~~l~~~~~~~~ 328 (336)
T KOG1575|consen 308 LSVKLTPEEIKELEEIIDKIL 328 (336)
T ss_pred hhccCCHHHHHHHHHhhcccc
Confidence 999999999999999987543
No 7
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=2.7e-57 Score=411.81 Aligned_cols=260 Identities=25% Similarity=0.424 Sum_probs=225.2
Q ss_pred ecCCCCcccccceeccc-----cChhhHHHHHHHHHHcCCcEEecCCCCC---CHHHHHHHHHHHHhcCCCCCccEEEEe
Q 021693 4 TLNNGFKMPIIGLGVWR-----MDESNIRDLIINAIKIGYRHIDCAADYR---NEAEVGEALAEAFSTGLVKREDLFITT 75 (309)
Q Consensus 4 ~l~tg~~vs~lg~G~~~-----~~~~~~~~~l~~A~~~Gin~~DTA~~Yg---sE~~lG~~l~~~~~~~~~~R~~~~i~t 75 (309)
.++||++||+||||||+ .+.+++.++|+.|++.|||+||||+.|| ||+.+|++|+. .+ .+|++++|+|
T Consensus 4 lg~tg~~vs~lglGt~~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~---~~-~~R~~~~iaT 79 (317)
T TIGR01293 4 LGKSGLRVSCLGLGTWVTFGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKK---KG-WRRSSYVITT 79 (317)
T ss_pred cCCCCCeecceeecCCccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHh---cC-CCcccEEEEe
Confidence 45789999999999986 4678899999999999999999999997 79999999985 33 3699999999
Q ss_pred cCCC---------CCcchHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHH
Q 021693 76 KLWN---------SDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAME 146 (309)
Q Consensus 76 K~~~---------~~~~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 146 (309)
|++. .+++.+++++++||+||||||||+|++|||+. ..+.+++|++|+
T Consensus 80 K~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~-----------------------~~~~~e~~~aL~ 136 (317)
T TIGR01293 80 KIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDP-----------------------NTPMEETVRAMT 136 (317)
T ss_pred eeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCC-----------------------CCCHHHHHHHHH
Confidence 9732 13578999999999999999999999999975 445789999999
Q ss_pred HHHHCCCeeEEeecCCCHHHHHHHHHhcC----CCceEEeeccCCCCCc---hHHHHHHHHcCCeEEEeccCCCCCCCCc
Q 021693 147 DLVSMGLVRSIGISNYDIFLTRDCLAYSK----VKPVVNQFETHPYFQR---DSLVKFCQKHGICVTAHTPLGGAVANTE 219 (309)
Q Consensus 147 ~l~~~Gkir~iGvs~~~~~~l~~~~~~~~----~~~~~~q~~~~~~~~~---~~ll~~~~~~gi~v~a~~pl~~G~l~~~ 219 (309)
+|+++||||+||+|||+..++.++..... ++|+++|++||++.++ ..++++|+++||++++|+||++|+|+++
T Consensus 137 ~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~ 216 (317)
T TIGR01293 137 YVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGK 216 (317)
T ss_pred HHHHcCCeeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCC
Confidence 99999999999999999998887765432 5788999999999875 3699999999999999999999999976
Q ss_pred ccCCcc-----------CCC--------------cHHHHHHHHHcCCCHHHHHHHHHhcCC--cEEecCCCChhHHHHhh
Q 021693 220 WFGTVS-----------CLD--------------DPVLKGLAEKYKRTVAQTVLRWGIQRN--TAVIPKTSKLERLEENF 272 (309)
Q Consensus 220 ~~~~~~-----------~~~--------------~~~l~~ia~~~~~s~aq~al~~~l~~~--~~vi~g~~~~~~l~~n~ 272 (309)
+....+ .+. .+.+.++|+++|+|++|+||+|++++| +++|||+++++|+++|+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~ 296 (317)
T TIGR01293 217 YDSGIPPYSRATLKGYQWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENL 296 (317)
T ss_pred CCCCCCCcccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHH
Confidence 532100 000 146889999999999999999999996 57899999999999999
Q ss_pred ccccc--cCCHHHHHHHHch
Q 021693 273 KVFDF--ELSKEDMDVIKSI 290 (309)
Q Consensus 273 ~~~~~--~L~~~~~~~l~~~ 290 (309)
++++. +||++++++|+++
T Consensus 297 ~a~~~~~~Ls~e~~~~l~~~ 316 (317)
T TIGR01293 297 GSLQVLPKLSSSIIHEIDSI 316 (317)
T ss_pred HHhhccCCCCHHHHHHHHhh
Confidence 99986 9999999999875
No 8
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=2.3e-56 Score=410.34 Aligned_cols=284 Identities=25% Similarity=0.333 Sum_probs=231.8
Q ss_pred ecCCCCcccccceecccc----ChhhHHHHHHHHHHcCCcEEecCCCCC----------CHHHHHHHHHHHHhcCCCCCc
Q 021693 4 TLNNGFKMPIIGLGVWRM----DESNIRDLIINAIKIGYRHIDCAADYR----------NEAEVGEALAEAFSTGLVKRE 69 (309)
Q Consensus 4 ~l~tg~~vs~lg~G~~~~----~~~~~~~~l~~A~~~Gin~~DTA~~Yg----------sE~~lG~~l~~~~~~~~~~R~ 69 (309)
.++||+.||+||||||++ +.+++.++|+.|++.|||+||||+.|| ||..+|++|+. .+ .|+
T Consensus 6 lg~t~~~vs~iglGt~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~---~~--~R~ 80 (346)
T PRK10625 6 IPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAK---RG--SRE 80 (346)
T ss_pred cCCCCCccccEeEeccccCCCCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhh---cC--Ccc
Confidence 457899999999999975 568899999999999999999999996 89999999986 33 699
Q ss_pred cEEEEecCCC--------------CCcchHHHHHHHHHHhhCCCceeEEEeecCCCCCC-CCCCCCCCCCCcCCcccccc
Q 021693 70 DLFITTKLWN--------------SDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKH-TGVGTTDSALDADGVLEIDT 134 (309)
Q Consensus 70 ~~~i~tK~~~--------------~~~~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~-~~~~~~~~~~~~~~~~~~~~ 134 (309)
+++|+||++. .+++.+++++++||+||||||||+|++|||+.... ..... +... .-.+
T Consensus 81 ~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~---~~~~----~~~~ 153 (346)
T PRK10625 81 KLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLG---YSWT----DSAP 153 (346)
T ss_pred eEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccc---cccc----cccC
Confidence 9999999852 23478999999999999999999999999964200 00000 0000 0001
Q ss_pred CCcHHHHHHHHHHHHHCCCeeEEeecCCCHHHHHHHHHhc---C-CCceEEeeccCCCCCc--hHHHHHHHHcCCeEEEe
Q 021693 135 TISLETTWHAMEDLVSMGLVRSIGISNYDIFLTRDCLAYS---K-VKPVVNQFETHPYFQR--DSLVKFCQKHGICVTAH 208 (309)
Q Consensus 135 ~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~---~-~~~~~~q~~~~~~~~~--~~ll~~~~~~gi~v~a~ 208 (309)
..++.++|++|++|+++|||++||+|||+...+++++... . ..+.++|.+||+++++ .+++++|+++||++++|
T Consensus 154 ~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~ 233 (346)
T PRK10625 154 AVSLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAY 233 (346)
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEe
Confidence 3457899999999999999999999999999888776532 2 3578899999998765 57999999999999999
Q ss_pred ccCCCCCCCCcccCCc-------cCCC-------------cHHHHHHHHHcCCCHHHHHHHHHhcCC--cEEecCCCChh
Q 021693 209 TPLGGAVANTEWFGTV-------SCLD-------------DPVLKGLAEKYKRTVAQTVLRWGIQRN--TAVIPKTSKLE 266 (309)
Q Consensus 209 ~pl~~G~l~~~~~~~~-------~~~~-------------~~~l~~ia~~~~~s~aq~al~~~l~~~--~~vi~g~~~~~ 266 (309)
+||++|+|++++.... ..+. .+.+.++|+++|+|++|+||+|++++| +++|+|+++++
T Consensus 234 spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~~~ 313 (346)
T PRK10625 234 SCLAFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTME 313 (346)
T ss_pred ccccCeeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCCHH
Confidence 9999999987642210 0010 257889999999999999999999998 46899999999
Q ss_pred HHHHhhccccccCCHHHHHHHHchhccCccCCC
Q 021693 267 RLEENFKVFDFELSKEDMDVIKSIDRKYRTNQP 299 (309)
Q Consensus 267 ~l~~n~~~~~~~L~~~~~~~l~~~~~~~~~~~~ 299 (309)
||++|+++++++|+++++++|+++.....++.|
T Consensus 314 ~l~en~~a~~~~L~~~~~~~l~~~~~~~~~~~~ 346 (346)
T PRK10625 314 QLKTNIESLHLTLSEEVLAEIEAVHQVYTYPAP 346 (346)
T ss_pred HHHHHHhhccCCCCHHHHHHHHHHHhhcCCCCC
Confidence 999999999999999999999999876655543
No 9
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=3.7e-56 Score=408.48 Aligned_cols=265 Identities=25% Similarity=0.399 Sum_probs=226.8
Q ss_pred cCCCCcccccceeccc-c----ChhhHHHHHHHHHHcCCcEEecCCCCC-----CHHHHHHHHHHHHhcCCCCCccEEEE
Q 021693 5 LNNGFKMPIIGLGVWR-M----DESNIRDLIINAIKIGYRHIDCAADYR-----NEAEVGEALAEAFSTGLVKREDLFIT 74 (309)
Q Consensus 5 l~tg~~vs~lg~G~~~-~----~~~~~~~~l~~A~~~Gin~~DTA~~Yg-----sE~~lG~~l~~~~~~~~~~R~~~~i~ 74 (309)
++||++||+||||||+ . +.+++.++|++|++.|||+||||+.|| +|+.+|++|++ .....|++++|+
T Consensus 19 g~tg~~vs~lglG~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~---~~~~~Rd~~~I~ 95 (346)
T PRK09912 19 GKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLRE---DFAAYRDELIIS 95 (346)
T ss_pred CCCCcccccccccCccccCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHh---cccCCCCeEEEE
Confidence 5789999999999996 2 456789999999999999999999998 69999999986 211259999999
Q ss_pred ecCCC----------CCcchHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHH
Q 021693 75 TKLWN----------SDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHA 144 (309)
Q Consensus 75 tK~~~----------~~~~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (309)
||++. .+++++++++++||+||||||||+|++|||+. ..+.+++|++
T Consensus 96 TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~-----------------------~~~~~e~~~a 152 (346)
T PRK09912 96 TKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDE-----------------------NTPMEETASA 152 (346)
T ss_pred EEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCC-----------------------CCCHHHHHHH
Confidence 99632 12478999999999999999999999999865 4557899999
Q ss_pred HHHHHHCCCeeEEeecCCCHHHHHHHHH---hcCCCceEEeeccCCCCCc---hHHHHHHHHcCCeEEEeccCCCCCCCC
Q 021693 145 MEDLVSMGLVRSIGISNYDIFLTRDCLA---YSKVKPVVNQFETHPYFQR---DSLVKFCQKHGICVTAHTPLGGAVANT 218 (309)
Q Consensus 145 L~~l~~~Gkir~iGvs~~~~~~l~~~~~---~~~~~~~~~q~~~~~~~~~---~~ll~~~~~~gi~v~a~~pl~~G~l~~ 218 (309)
|++|+++|||++||||||++++++++.+ ..++++.++|++||++++. ..++++|+++||++++|+||++|+|++
T Consensus 153 l~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~ 232 (346)
T PRK09912 153 LAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTG 232 (346)
T ss_pred HHHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccC
Confidence 9999999999999999999998876654 3356789999999998874 469999999999999999999999997
Q ss_pred cccCCcc------------------CCC------cHHHHHHHHHcCCCHHHHHHHHHhcCC--cEEecCCCChhHHHHhh
Q 021693 219 EWFGTVS------------------CLD------DPVLKGLAEKYKRTVAQTVLRWGIQRN--TAVIPKTSKLERLEENF 272 (309)
Q Consensus 219 ~~~~~~~------------------~~~------~~~l~~ia~~~~~s~aq~al~~~l~~~--~~vi~g~~~~~~l~~n~ 272 (309)
++....+ ... .+.+.++|+++|+|++|+||+|++++| +++|||+++++||++|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en~ 312 (346)
T PRK09912 233 KYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEENV 312 (346)
T ss_pred CCCCCCCCCccccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHH
Confidence 6422100 010 157888999999999999999999997 68999999999999999
Q ss_pred ccc-cccCCHHHHHHHHchhccCc
Q 021693 273 KVF-DFELSKEDMDVIKSIDRKYR 295 (309)
Q Consensus 273 ~~~-~~~L~~~~~~~l~~~~~~~~ 295 (309)
+++ .++|+++++++|+++.++..
T Consensus 313 ~a~~~~~L~~e~~~~l~~~~~~~~ 336 (346)
T PRK09912 313 QALNNLTFSTEELAQIDQHIADGE 336 (346)
T ss_pred hhhcCCCCCHHHHHHHHHhhCccc
Confidence 998 47999999999999887643
No 10
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=3.1e-54 Score=386.57 Aligned_cols=259 Identities=39% Similarity=0.613 Sum_probs=230.1
Q ss_pred cCCCCcccccceeccccC-----hhhHHHHHHHHHHcCCcEEecCCCCC---CHHHHHHHHHHHHhcCCCCCccEEEEec
Q 021693 5 LNNGFKMPIIGLGVWRMD-----ESNIRDLIINAIKIGYRHIDCAADYR---NEAEVGEALAEAFSTGLVKREDLFITTK 76 (309)
Q Consensus 5 l~tg~~vs~lg~G~~~~~-----~~~~~~~l~~A~~~Gin~~DTA~~Yg---sE~~lG~~l~~~~~~~~~~R~~~~i~tK 76 (309)
.+||++||+||||||++. .+++.++++.|++.|||+||||+.|| +|+.+|++|+. .+ .|++++|+||
T Consensus 5 g~tg~~vs~lg~G~~~~~~~~~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~---~~--~R~~~~i~tK 79 (285)
T cd06660 5 GKTGLKVSRLGLGTWQLGGGYVDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKE---RG--PREEVFIATK 79 (285)
T ss_pred CCCCceecCcceeccccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhc---cC--CcCcEEEEee
Confidence 359999999999998864 48899999999999999999999998 89999999997 22 4999999999
Q ss_pred CCCC-------CcchHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHH
Q 021693 77 LWNS-------DHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLV 149 (309)
Q Consensus 77 ~~~~-------~~~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 149 (309)
++.. +++.+++++++||++||+||||+|+||||+.. .....++|++|+++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~----------------------~~~~~~~~~~l~~l~ 137 (285)
T cd06660 80 VGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPD----------------------TPDIEETLRALEELV 137 (285)
T ss_pred ecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCC----------------------CCCHHHHHHHHHHHH
Confidence 9765 45899999999999999999999999999762 123789999999999
Q ss_pred HCCCeeEEeecCCCHHHHHHHHHhcCCCceEEeeccCCCCCch--HHHHHHHHcCCeEEEeccCCCCCCCCcccCCccCC
Q 021693 150 SMGLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQRD--SLVKFCQKHGICVTAHTPLGGAVANTEWFGTVSCL 227 (309)
Q Consensus 150 ~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~--~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~ 227 (309)
++|+||+||||||+...+.+++.....+|+++|++||++++.. +++++|+++||++++|+||++|.+++.........
T Consensus 138 ~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~~ 217 (285)
T cd06660 138 KEGKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPP 217 (285)
T ss_pred HcCCccEEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCCCCCCC
Confidence 9999999999999999999999887778999999999999875 49999999999999999999998876543322111
Q ss_pred ---CcHHHHHHHHHcCCCHHHHHHHHHhcCC--cEEecCCCChhHHHHhhccccccCCHHHHHHHHch
Q 021693 228 ---DDPVLKGLAEKYKRTVAQTVLRWGIQRN--TAVIPKTSKLERLEENFKVFDFELSKEDMDVIKSI 290 (309)
Q Consensus 228 ---~~~~l~~ia~~~~~s~aq~al~~~l~~~--~~vi~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~ 290 (309)
..+.+..++.+++++++|+|++|++++| .+||+|+++++|+++|+++...+|++++++.|+++
T Consensus 218 ~~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~ 285 (285)
T cd06660 218 EGDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDAL 285 (285)
T ss_pred hhhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhhC
Confidence 1367889999999999999999999995 78999999999999999999889999999999863
No 11
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.2e-53 Score=383.16 Aligned_cols=253 Identities=28% Similarity=0.371 Sum_probs=218.2
Q ss_pred eeecCCCCcccccceecccc----------ChhhHHHHHHHHHHcCCcEEecCCCCC---CHHHHHHHHHHHHhcCCCCC
Q 021693 2 AITLNNGFKMPIIGLGVWRM----------DESNIRDLIINAIKIGYRHIDCAADYR---NEAEVGEALAEAFSTGLVKR 68 (309)
Q Consensus 2 ~~~l~tg~~vs~lg~G~~~~----------~~~~~~~~l~~A~~~Gin~~DTA~~Yg---sE~~lG~~l~~~~~~~~~~R 68 (309)
+++++ |++||+||||||++ +.+++.++|+.|++.|||+||||+.|| +|+.+|++++. .|
T Consensus 9 ~~~l~-g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~-------~R 80 (290)
T PRK10376 9 TFTLG-GRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP-------YP 80 (290)
T ss_pred ceecC-CeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc-------CC
Confidence 45666 99999999999875 356789999999999999999999998 48899999965 69
Q ss_pred ccEEEEecCCC-----------CCcchHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCc
Q 021693 69 EDLFITTKLWN-----------SDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTIS 137 (309)
Q Consensus 69 ~~~~i~tK~~~-----------~~~~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (309)
++++|+||+.. .+++.+++++++||+||||||||+|++|++.... +....+
T Consensus 81 ~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h------------------~p~~~~ 142 (290)
T PRK10376 81 DDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGH------------------GPAEGS 142 (290)
T ss_pred CeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCC------------------CCCCCC
Confidence 99999999732 2347899999999999999999999999863210 000234
Q ss_pred HHHHHHHHHHHHHCCCeeEEeecCCCHHHHHHHHHhcCCCceEEeeccCCCCCc-hHHHHHHHHcCCeEEEeccCCCCCC
Q 021693 138 LETTWHAMEDLVSMGLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQR-DSLVKFCQKHGICVTAHTPLGGAVA 216 (309)
Q Consensus 138 ~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~ll~~~~~~gi~v~a~~pl~~G~l 216 (309)
..++|++|++|+++||||+||||||+.++++++.+.. ++.++|++||++.+. .+++++|+++||++++|+||+++.
T Consensus 143 ~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~--~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~a~~pL~g~~- 219 (290)
T PRK10376 143 IEEPLTVLAELQRQGLVRHIGLSNVTPTQVAEARKIA--EIVCVQNHYNLAHRADDALIDALARDGIAYVPFFPLGGFT- 219 (290)
T ss_pred HHHHHHHHHHHHHCCceeEEEecCCCHHHHHHHHhhC--CeEEEecccCCCcCChHHHHHHHHHcCCEEEEeecCCCCC-
Confidence 7789999999999999999999999999999988776 458899999998875 679999999999999999998541
Q ss_pred CCcccCCccCCCcHHHHHHHHHcCCCHHHHHHHHHhcCC--cEEecCCCChhHHHHhhccccccCCHHHHHHHHchhc
Q 021693 217 NTEWFGTVSCLDDPVLKGLAEKYKRTVAQTVLRWGIQRN--TAVIPKTSKLERLEENFKVFDFELSKEDMDVIKSIDR 292 (309)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~ia~~~~~s~aq~al~~~l~~~--~~vi~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~~~ 292 (309)
....+.+.++|+++|+|++|+||+|+++++ +++|+|+++++|+++|+++++++|+++++++|+++.+
T Consensus 220 ---------~~~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~ 288 (290)
T PRK10376 220 ---------PLQSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIAR 288 (290)
T ss_pred ---------hhhhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 123478999999999999999999999873 7889999999999999999999999999999998754
No 12
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=1.1e-53 Score=387.79 Aligned_cols=266 Identities=19% Similarity=0.267 Sum_probs=222.0
Q ss_pred eecCCCCcccccceecccc-------ChhhHHHHHHHHHHcCCcEEecCCCCC---CHHHHHHHHHHHHhcCCCCCccEE
Q 021693 3 ITLNNGFKMPIIGLGVWRM-------DESNIRDLIINAIKIGYRHIDCAADYR---NEAEVGEALAEAFSTGLVKREDLF 72 (309)
Q Consensus 3 ~~l~tg~~vs~lg~G~~~~-------~~~~~~~~l~~A~~~Gin~~DTA~~Yg---sE~~lG~~l~~~~~~~~~~R~~~~ 72 (309)
..++||++||.||||||++ +.+++.++|++|++.|||+||||+.|| +|..+|++|++ .+ ..|++++
T Consensus 3 ~lg~t~~~vs~lglG~~~~g~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~---~~-~~R~~v~ 78 (314)
T PLN02587 3 ELGSTGLKVSSVGFGASPLGSVFGPVSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKA---LG-IPREKYV 78 (314)
T ss_pred cCCCCCCcccCcccccccccCCCCCCCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHh---CC-CCcceEE
Confidence 3467999999999999863 577899999999999999999999997 59999999986 33 3699999
Q ss_pred EEecCCC------CCcchHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHH
Q 021693 73 ITTKLWN------SDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAME 146 (309)
Q Consensus 73 i~tK~~~------~~~~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 146 (309)
|+||++. .+++.+++++++||+||||||||+|++|||+... ......++|++|+
T Consensus 79 I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~--------------------~~~~~~~~~~~l~ 138 (314)
T PLN02587 79 VSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGS--------------------LDQIVNETIPALQ 138 (314)
T ss_pred EEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcc--------------------hhhhHHHHHHHHH
Confidence 9999863 2358899999999999999999999999986410 0234678999999
Q ss_pred HHHHCCCeeEEeecCCCHHHHHHHHHhc---CCCceEEeeccCCCCCc-hHHHHHHHHcCCeEEEeccCCCCCCCCcccC
Q 021693 147 DLVSMGLVRSIGISNYDIFLTRDCLAYS---KVKPVVNQFETHPYFQR-DSLVKFCQKHGICVTAHTPLGGAVANTEWFG 222 (309)
Q Consensus 147 ~l~~~Gkir~iGvs~~~~~~l~~~~~~~---~~~~~~~q~~~~~~~~~-~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~ 222 (309)
+|+++||||+||+|||++++++.+.+.. .+.+.++|+.|++..+. .+++++|+++||++++|+||++|+|+++...
T Consensus 139 ~l~~~Gkir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~gi~v~a~spl~~G~L~~~~~~ 218 (314)
T PLN02587 139 KLKESGKVRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSLEDLLPYLKSKGVGVISASPLAMGLLTENGPP 218 (314)
T ss_pred HHHHCCCeEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhHHHHHHHHHHcCceEEEechhhccccCCCCCC
Confidence 9999999999999999998887776543 23455678888876653 5899999999999999999999999875321
Q ss_pred CccCCC------cHHHHHHHHHcCCCHHHHHHHHHhcCC--cEEecCCCChhHHHHhhcccc----ccCCHHHHHHHHch
Q 021693 223 TVSCLD------DPVLKGLAEKYKRTVAQTVLRWGIQRN--TAVIPKTSKLERLEENFKVFD----FELSKEDMDVIKSI 290 (309)
Q Consensus 223 ~~~~~~------~~~l~~ia~~~~~s~aq~al~~~l~~~--~~vi~g~~~~~~l~~n~~~~~----~~L~~~~~~~l~~~ 290 (309)
...... .+.+..+|+++++|++|+||+|++++| ++||+|+++++|+++|+++++ .+|+++++++|+++
T Consensus 219 ~~~~~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~ 298 (314)
T PLN02587 219 EWHPAPPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVEAI 298 (314)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHh
Confidence 110000 134678999999999999999999998 578999999999999999975 37999999999988
Q ss_pred hc
Q 021693 291 DR 292 (309)
Q Consensus 291 ~~ 292 (309)
..
T Consensus 299 ~~ 300 (314)
T PLN02587 299 LA 300 (314)
T ss_pred hc
Confidence 76
No 13
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=6.9e-54 Score=383.96 Aligned_cols=253 Identities=33% Similarity=0.546 Sum_probs=215.5
Q ss_pred ccceeccc-----cChhhHHHHHHHHHHcCCcEEecCCCCC---CHHHHHHHHHHHHhcCCCCCccEEEEecC-------
Q 021693 13 IIGLGVWR-----MDESNIRDLIINAIKIGYRHIDCAADYR---NEAEVGEALAEAFSTGLVKREDLFITTKL------- 77 (309)
Q Consensus 13 ~lg~G~~~-----~~~~~~~~~l~~A~~~Gin~~DTA~~Yg---sE~~lG~~l~~~~~~~~~~R~~~~i~tK~------- 77 (309)
+||||||+ .+.+++.++|+.|++.|||+||||+.|| +|+.+|++|+. .. .+|++++|+||+
T Consensus 1 ~l~lG~~~~~~~~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~---~~-~~r~~~~i~tK~~~~~~~~ 76 (283)
T PF00248_consen 1 PLGLGTWRLGGERVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRK---SR-VPRDDIFISTKVYGDGKPE 76 (283)
T ss_dssp SBEEECTTBTTTTSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHH---TS-STGGGSEEEEEEESSSSTG
T ss_pred CEEEEccccCCCCCCHHHHHHHHHHHHHcCCCeeccccccccccccccccccccc---cc-ccccccccccccccccccc
Confidence 58999985 5788999999999999999999999993 79999999997 33 589999999999
Q ss_pred CCCCcchHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCCeeEE
Q 021693 78 WNSDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSI 157 (309)
Q Consensus 78 ~~~~~~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~i 157 (309)
...+++.+++++++||++||+||||+|++|||+.. .....++|++|++|+++|+||+|
T Consensus 77 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~----------------------~~~~~~~~~~l~~l~~~G~ir~i 134 (283)
T PF00248_consen 77 PDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPS----------------------EDALEEVWEALEELKKEGKIRHI 134 (283)
T ss_dssp GGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTT----------------------SSHHHHHHHHHHHHHHTTSEEEE
T ss_pred ccccccccccccccccccccccchhcccccccccc----------------------ccccchhhhhhhhcccccccccc
Confidence 44555899999999999999999999999999872 22388999999999999999999
Q ss_pred eecCCCHHHHHHHHHhcCCCceEEeeccCCCC--CchHHHHHHHHcCCeEEEeccCCCCCCCCcccCCccC---------
Q 021693 158 GISNYDIFLTRDCLAYSKVKPVVNQFETHPYF--QRDSLVKFCQKHGICVTAHTPLGGAVANTEWFGTVSC--------- 226 (309)
Q Consensus 158 Gvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~--~~~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~--------- 226 (309)
|||||+++.++.+.....++|+++|++||++. ...+++++|+++||++++|+|+++|+|++........
T Consensus 135 Gvs~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~~~~~ 214 (283)
T PF00248_consen 135 GVSNFSPEQLEAALKIGSIPPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRASLRDA 214 (283)
T ss_dssp EEES--HHHHHHHHTCTSS-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTSGSSTH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCccccccccCCCcccccccchh
Confidence 99999999999997777889999999999993 3478999999999999999999999998765433221
Q ss_pred -CCcHHHHHHHHHcCCCHHHHHHHHHhcCC--cEEecCCCChhHHHHhhccccccCCHHHHHHHHchh
Q 021693 227 -LDDPVLKGLAEKYKRTVAQTVLRWGIQRN--TAVIPKTSKLERLEENFKVFDFELSKEDMDVIKSID 291 (309)
Q Consensus 227 -~~~~~l~~ia~~~~~s~aq~al~~~l~~~--~~vi~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~~ 291 (309)
...+.+.++++++|+|++|+||+|+++++ .+||+|+++++|+++|+++++++||++++++|+++.
T Consensus 215 ~~~~~~l~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 215 QELADALRELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp GGGHHHHHHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred hhhhhhhhhhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 33478999999999999999999999764 899999999999999999999999999999999875
No 14
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=1.1e-52 Score=376.35 Aligned_cols=264 Identities=17% Similarity=0.176 Sum_probs=219.7
Q ss_pred CCcccccceecccc--------------ChhhHHHHHHHHHHcCCcEEecCCCCC-CHHHHHHHHHHHHhcCCCCCccEE
Q 021693 8 GFKMPIIGLGVWRM--------------DESNIRDLIINAIKIGYRHIDCAADYR-NEAEVGEALAEAFSTGLVKREDLF 72 (309)
Q Consensus 8 g~~vs~lg~G~~~~--------------~~~~~~~~l~~A~~~Gin~~DTA~~Yg-sE~~lG~~l~~~~~~~~~~R~~~~ 72 (309)
+++||+||||||++ +.+++.++|+.|++.|||+||||+.|| ||..+|++|++ ..|++++
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~SE~~lG~al~~------~~~~~~~ 75 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGRAETVLGQLIPR------PVPFRVT 75 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhhHHHHHhhhhcc------CCceEee
Confidence 67899999999764 357899999999999999999999999 79999999975 1356799
Q ss_pred EEecCCCCCcchHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCc-HHHHHHHHHHHHHC
Q 021693 73 ITTKLWNSDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTIS-LETTWHAMEDLVSM 151 (309)
Q Consensus 73 i~tK~~~~~~~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~l~~~ 151 (309)
|+||....+++.+++++++||+||||||||+|++|+|+.. ..+ ..++|++|++|+++
T Consensus 76 i~tk~~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~----------------------~~~~~~~~~~~l~~l~~~ 133 (292)
T PRK14863 76 LSTVRADRGPDFVEAEARASLRRMGVERADAILVHSPTEL----------------------FGPHGAALWERLQALKDQ 133 (292)
T ss_pred cccccccccHHHHHHHHHHHHHHhCCCccCeEEEeCchhh----------------------cCcchHHHHHHHHHHHHc
Confidence 9999655556899999999999999999999999998641 112 25789999999999
Q ss_pred CCeeEEeecCCCHHHHHHHHHhcCCCceEEeeccCCCCCc---hHHHHHHHHcCCeEEEeccCCCCCCCCcccCCccCC-
Q 021693 152 GLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQR---DSLVKFCQKHGICVTAHTPLGGAVANTEWFGTVSCL- 227 (309)
Q Consensus 152 Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~- 227 (309)
||||+||||||++.++..+.. ..+|+++|++||+++++ ..++++|+++||++++|+||++|+|++........+
T Consensus 134 Gkir~iGvSn~~~~~~~~~~~--~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~ 211 (292)
T PRK14863 134 GLFAKIGVSAHASDDPVGVAR--RFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPDRVPAQLK 211 (292)
T ss_pred CCcceEeeeccCHHHHHHHHh--cCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCcccCccchh
Confidence 999999999999998877654 34789999999999875 359999999999999999999999875321101111
Q ss_pred ----CcHHHHHHHHHcCCCHHHHHHHHHhcCC--cEEecCCCChhHHHHhhccccccCCHHHHHHHHchhccCccCCCCc
Q 021693 228 ----DDPVLKGLAEKYKRTVAQTVLRWGIQRN--TAVIPKTSKLERLEENFKVFDFELSKEDMDVIKSIDRKYRTNQPAR 301 (309)
Q Consensus 228 ----~~~~l~~ia~~~~~s~aq~al~~~l~~~--~~vi~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~~~~~~~~~~~~ 301 (309)
....+.+++.+.++|++|+||+|++++| +++|+|+++++|+++|+++.+.+++++.+++|..-.. -..+|.
T Consensus 212 ~~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~~~~~--~~~~~~- 288 (292)
T PRK14863 212 GASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMAIDDP--VALDPR- 288 (292)
T ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhccCChh--hccCcc-
Confidence 1134566778889999999999999987 6789999999999999999988999988888876544 356788
Q ss_pred ccC
Q 021693 302 FWG 304 (309)
Q Consensus 302 ~w~ 304 (309)
.|.
T Consensus 289 ~~~ 291 (292)
T PRK14863 289 RWV 291 (292)
T ss_pred ccC
Confidence 885
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=2.9e-51 Score=342.42 Aligned_cols=262 Identities=29% Similarity=0.408 Sum_probs=231.6
Q ss_pred eeecC-CCCcccccceeccc-----cChhhHHHHHHHHHHcCCcEEecCCCCC---CHHHHHHHHHHHHhcCCCCCccEE
Q 021693 2 AITLN-NGFKMPIIGLGVWR-----MDESNIRDLIINAIKIGYRHIDCAADYR---NEAEVGEALAEAFSTGLVKREDLF 72 (309)
Q Consensus 2 ~~~l~-tg~~vs~lg~G~~~-----~~~~~~~~~l~~A~~~Gin~~DTA~~Yg---sE~~lG~~l~~~~~~~~~~R~~~~ 72 (309)
+++++ .|+++|+|.+|+|+ .+..+....++.|++.|||+||-|+.|| .|+++|++|+. .. ..|+++.
T Consensus 3 rI~l~~~~~e~Sriv~G~wRl~d~~~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l---~p-~lRekie 78 (298)
T COG4989 3 RITLAPDGLEFSRIVLGYWRLNDWNMSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKL---AP-GLREKIE 78 (298)
T ss_pred eEEecCCCccHHHHHHHHHhhhhccCCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhc---Ch-hhhhheE
Confidence 56776 89999999999988 4567899999999999999999999998 49999999986 22 3699999
Q ss_pred EEecCCC--------------CCcchHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcH
Q 021693 73 ITTKLWN--------------SDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISL 138 (309)
Q Consensus 73 i~tK~~~--------------~~~~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (309)
|+||++. ++.++|..|+|+||++|+|||+|+++||.||+ .+..
T Consensus 79 ivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDp-----------------------Lmd~ 135 (298)
T COG4989 79 IVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDP-----------------------LMDA 135 (298)
T ss_pred eeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcc-----------------------cCCH
Confidence 9999842 23389999999999999999999999999987 6778
Q ss_pred HHHHHHHHHHHHCCCeeEEeecCCCHHHHHHHHHhcCCCceEEeeccCCCCCc---hHHHHHHHHcCCeEEEeccCCCCC
Q 021693 139 ETTWHAMEDLVSMGLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQR---DSLVKFCQKHGICVTAHTPLGGAV 215 (309)
Q Consensus 139 ~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~ll~~~~~~gi~v~a~~pl~~G~ 215 (309)
+++.+|+..|++.|||||+|||||++.+++-+.+....+.+.||+++|++..+ ++.+++|+++.|.+++||||++|-
T Consensus 136 eeVAeAf~~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~ 215 (298)
T COG4989 136 EEVAEAFTHLHKSGKVRHFGVSNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGG 215 (298)
T ss_pred HHHHHHHHHHHhcCCeeeeecCCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCc
Confidence 89999999999999999999999999999998888888899999999998775 679999999999999999999983
Q ss_pred CCCcccCCccCC--CcHHHHHHHHHcC-CCHHHHHHHHHhcCC--cEEecCCCChhHHHHhhccccccCCHHHHHHHHch
Q 021693 216 ANTEWFGTVSCL--DDPVLKGLAEKYK-RTVAQTVLRWGIQRN--TAVIPKTSKLERLEENFKVFDFELSKEDMDVIKSI 290 (309)
Q Consensus 216 l~~~~~~~~~~~--~~~~l~~ia~~~~-~s~aq~al~~~l~~~--~~vi~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~ 290 (309)
+ |.....+ ...++.++|.++| .|.++++++|++.+| ..+|+|+.+++++++.++++++.||+++|-+|..+
T Consensus 216 ~----F~g~~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy~A 291 (298)
T COG4989 216 L----FLGDDKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIYTA 291 (298)
T ss_pred c----ccCCcchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 2 2111111 2368999999999 799999999999998 57899999999999999999999999999999988
Q ss_pred hccC
Q 021693 291 DRKY 294 (309)
Q Consensus 291 ~~~~ 294 (309)
....
T Consensus 292 a~G~ 295 (298)
T COG4989 292 AIGN 295 (298)
T ss_pred hccC
Confidence 7543
No 16
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=1.1e-43 Score=299.10 Aligned_cols=274 Identities=23% Similarity=0.281 Sum_probs=214.5
Q ss_pred ecCCCCcccccceeccc-------cChhhHHHHHHHHHHcCCcEEecCCCCC---CHHHHHHHHHHHHhcCCCCCccEEE
Q 021693 4 TLNNGFKMPIIGLGVWR-------MDESNIRDLIINAIKIGYRHIDCAADYR---NEAEVGEALAEAFSTGLVKREDLFI 73 (309)
Q Consensus 4 ~l~tg~~vs~lg~G~~~-------~~~~~~~~~l~~A~~~Gin~~DTA~~Yg---sE~~lG~~l~~~~~~~~~~R~~~~i 73 (309)
..+||++||+||||+.. .+.++....+..|+++|||+|||++.|| +|..+|.++.+ ++|+.+||
T Consensus 27 lg~tgl~VSk~~fGga~L~~~fgd~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~------vPR~aYyI 100 (342)
T KOG1576|consen 27 LGSTGLRVSKLGFGGAALGQLFGDEDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKD------VPREAYYI 100 (342)
T ss_pred cCCCcceeeeeeecchhhhhhcCCcchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhh------CChhheee
Confidence 36899999999999954 3667788888889999999999999998 69999999998 79999999
Q ss_pred EecCCCC----------CcchHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHH
Q 021693 74 TTKLWNS----------DHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWH 143 (309)
Q Consensus 74 ~tK~~~~----------~~~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (309)
+||+... +.+.+++|+++||+||++||+|++++|..+..+. -+..+.|++.
T Consensus 101 aTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~-------------------ld~vl~Etlp 161 (342)
T KOG1576|consen 101 ATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPN-------------------LDIVLNETLP 161 (342)
T ss_pred eeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeeccccccc-------------------ccHHHHHHHH
Confidence 9999532 3488999999999999999999999998776311 0455789999
Q ss_pred HHHHHHHCCCeeEEeecCCCHHHHHHHHHhcCC--CceEEeeccCCCCCc-hHHHHHHHHcCCeEEEeccCCCCCCCCcc
Q 021693 144 AMEDLVSMGLVRSIGISNYDIFLTRDCLAYSKV--KPVVNQFETHPYFQR-DSLVKFCQKHGICVTAHTPLGGAVANTEW 220 (309)
Q Consensus 144 ~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~--~~~~~q~~~~~~~~~-~~ll~~~~~~gi~v~a~~pl~~G~l~~~~ 220 (309)
+|+++|++||||+||++.++.+.+..+.+...- ..+..-.+|++-+.. -..+++.+..|++|++-++++.|+|+...
T Consensus 162 ~Le~lk~~Gk~RfiGitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tLl~~~~~~~sk~vgVi~AsalsmgLLt~~g 241 (342)
T KOG1576|consen 162 ALEELKQEGKIRFIGITGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNTLLRYLKRLKSKGVGVINASALSMGLLTNQG 241 (342)
T ss_pred HHHHHHhcCceeEeeecccchHHHHHHHhcCCCceeeehhhhhhccccHHHHHHHHHHHhcCceEEehhhHHHHHhhcCC
Confidence 999999999999999999999999999876642 223333555553332 34567788999999999999999998644
Q ss_pred cCCccCCCc------HHHHHHHHHcCCCHHHHHHHHHhcCC--cEEecCCCChhHHHHhhccccccCCH-HHHHHHHchh
Q 021693 221 FGTVSCLDD------PVLKGLAEKYKRTVAQTVLRWGIQRN--TAVIPKTSKLERLEENFKVFDFELSK-EDMDVIKSID 291 (309)
Q Consensus 221 ~~~~~~~~~------~~l~~ia~~~~~s~aq~al~~~l~~~--~~vi~g~~~~~~l~~n~~~~~~~L~~-~~~~~l~~~~ 291 (309)
.+......+ ....+.|++.++.++.+|+.|.++.+ .++++|+++.++++.|+++....||. .+...+.-+.
T Consensus 242 p~~wHPaS~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~~~~Qevl~~~r 321 (342)
T KOG1576|consen 242 PPPWHPASDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSSKHEQEVLRILR 321 (342)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccchhHHHHHHHHH
Confidence 333322222 34456677889999999999999986 68999999999999999976557887 3443333333
Q ss_pred ccCccCCCCccc
Q 021693 292 RKYRTNQPARFW 303 (309)
Q Consensus 292 ~~~~~~~~~~~w 303 (309)
.+....-+. .|
T Consensus 322 ~~~~~~kn~-~W 332 (342)
T KOG1576|consen 322 EILKETKNE-EW 332 (342)
T ss_pred HHhhhhccC-CC
Confidence 333222223 57
No 17
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=7.7e-44 Score=313.50 Aligned_cols=255 Identities=25% Similarity=0.338 Sum_probs=215.5
Q ss_pred cCCCCcccccceecccc--------ChhhHHHHHHHHHHcCCcEEecCCCC--C-CHHHHHHHHHHHHhcCCCCCccEEE
Q 021693 5 LNNGFKMPIIGLGVWRM--------DESNIRDLIINAIKIGYRHIDCAADY--R-NEAEVGEALAEAFSTGLVKREDLFI 73 (309)
Q Consensus 5 l~tg~~vs~lg~G~~~~--------~~~~~~~~l~~A~~~Gin~~DTA~~Y--g-sE~~lG~~l~~~~~~~~~~R~~~~i 73 (309)
.+||.++|.+|||+|++ +.+.+.++|+.|++.|||+||||..| | ||..+|++|.+ -.|++|++
T Consensus 7 ~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~------~~Rekv~L 80 (391)
T COG1453 7 PKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKD------GYREKVKL 80 (391)
T ss_pred CCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhh------cccceEEE
Confidence 47999999999999983 66789999999999999999999999 6 79999999997 26999999
Q ss_pred EecCCC---CCcchHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHH
Q 021693 74 TTKLWN---SDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVS 150 (309)
Q Consensus 74 ~tK~~~---~~~~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 150 (309)
+||+.. .+.+.+++-++++|++||+||+|+|+||+.... .|+ ......+++.++++|+
T Consensus 81 aTKlp~~~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e------------------~~~-k~~~~g~~df~~kak~ 141 (391)
T COG1453 81 ATKLPSWPVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTE------------------TWE-KIERLGVFDFLEKAKA 141 (391)
T ss_pred EeecCCccccCHHHHHHHHHHHHHHhCCchhhhhhhccccHH------------------HHH-HHHccChHHHHHHHHh
Confidence 999853 234899999999999999999999999987541 122 1222247999999999
Q ss_pred CCCeeEEeecCCCHH-HHHHHHHhcCCCceEEeeccCCCCCc----hHHHHHHHHcCCeEEEeccCCCCCCCCcccCCcc
Q 021693 151 MGLVRSIGISNYDIF-LTRDCLAYSKVKPVVNQFETHPYFQR----DSLVKFCQKHGICVTAHTPLGGAVANTEWFGTVS 225 (309)
Q Consensus 151 ~Gkir~iGvs~~~~~-~l~~~~~~~~~~~~~~q~~~~~~~~~----~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~ 225 (309)
+||||++|+|.|+.. .+.+++.... ++++|+.+|.++.. .+.+++|.++|++|+.|+|+.+|-|..
T Consensus 142 eGkIr~~GFSfHgs~e~~~~iv~a~~--~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~------- 212 (391)
T COG1453 142 EGKIRNAGFSFHGSTEVFKEIVDAYP--WDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLY------- 212 (391)
T ss_pred cCcEEEeeecCCCCHHHHHHHHhcCC--cceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCccc-------
Confidence 999999999999755 6777777664 68899999988764 278999999999999999999995421
Q ss_pred CCCcHHHHHHHHHcC--CCHHHHHHHHHhcCC--cEEecCCCChhHHHHhhccccc--c-CCHHHHHHHHchhccC
Q 021693 226 CLDDPVLKGLAEKYK--RTVAQTVLRWGIQRN--TAVIPKTSKLERLEENFKVFDF--E-LSKEDMDVIKSIDRKY 294 (309)
Q Consensus 226 ~~~~~~l~~ia~~~~--~s~aq~al~~~l~~~--~~vi~g~~~~~~l~~n~~~~~~--~-L~~~~~~~l~~~~~~~ 294 (309)
-.-+++.++.+++. .||+.+|+||+++++ ++|++|+++++|++||+..++. | ||++|.+.|.++.+..
T Consensus 213 -~vP~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~il~~v~~~~ 287 (391)
T COG1453 213 -NVPEKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQILEKVEEIY 287 (391)
T ss_pred -CCCHHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHH
Confidence 12368899999986 689999999999998 6889999999999999998753 4 9999999998887643
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.60 E-value=1.4e-07 Score=79.58 Aligned_cols=74 Identities=26% Similarity=0.451 Sum_probs=69.2
Q ss_pred CcHHHHHHHHHHHHHCCCeeEEeecCCCHHHHHHHHHhcCCCceEEeeccCCCCC-chHHHHHHHHcCCeEEEec
Q 021693 136 ISLETTWHAMEDLVSMGLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQ-RDSLVKFCQKHGICVTAHT 209 (309)
Q Consensus 136 ~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~-~~~ll~~~~~~gi~v~a~~ 209 (309)
..+.+.|+.||+++.+|||..||+|.+++.+++++++.+.+.|..+|+++.-++. +.++..+|.+|+|.+..++
T Consensus 153 e~lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvPpdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 153 ESLKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVPPDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCCHHHHHHhhhcceeeeecC
Confidence 4567899999999999999999999999999999999999999999999998876 5889999999999999877
No 19
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=89.70 E-value=2.9 Score=35.00 Aligned_cols=77 Identities=17% Similarity=0.274 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHCCCeeEEeecCCCHHHHHHHHHhcCCCceEEeeccCCCCCc-------hHHHHHHHHcCCeEEEeccC
Q 021693 139 ETTWHAMEDLVSMGLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQR-------DSLVKFCQKHGICVTAHTPL 211 (309)
Q Consensus 139 ~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-------~~ll~~~~~~gi~v~a~~pl 211 (309)
......|+++.+-|+=.-+++.||.-+...--+-..+--|+.-.++|.-++.+ ++..++|++.|+.|.-..++
T Consensus 89 ~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~ 168 (193)
T PF07021_consen 89 RRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFL 168 (193)
T ss_pred hHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEE
Confidence 33445677778889988899999988876655553344466777787766543 68899999999999999999
Q ss_pred CCCC
Q 021693 212 GGAV 215 (309)
Q Consensus 212 ~~G~ 215 (309)
.++-
T Consensus 169 ~~~~ 172 (193)
T PF07021_consen 169 DGGR 172 (193)
T ss_pred cCCC
Confidence 8873
No 20
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=81.93 E-value=39 Score=30.49 Aligned_cols=152 Identities=11% Similarity=-0.014 Sum_probs=87.1
Q ss_pred ChhhHHHHHHHHHHcCCcEEecCCCCCCHHH--HHHHHHHHHhcCCCCCccEEEEecCCCCCcchHHHHHHHHHHhhCCC
Q 021693 22 DESNIRDLIINAIKIGYRHIDCAADYRNEAE--VGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKKLQLD 99 (309)
Q Consensus 22 ~~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~--lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~i~~~ve~SL~~L~~d 99 (309)
+.++..+.++.+.+.|++.|+.--.-..+.. .=+++++ . +. ++-|.-+....-...-...+-+.|+.+
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~g~~~~~d~~~v~~lr~----~-~g--~~~l~vD~n~~~~~~~A~~~~~~l~~~--- 203 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKLGGDLEDDIERIRAIRE----A-AP--DARLRVDANQGWTPEEAVELLRELAEL--- 203 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCCChhhHHHHHHHHHH----h-CC--CCeEEEeCCCCcCHHHHHHHHHHHHhc---
Confidence 4566677788888999999987432111211 1123332 1 12 455666653221111122223344443
Q ss_pred ceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCCee-EEeecCCCHHHHHHHHHhcCCCc
Q 021693 100 YLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVR-SIGISNYDIFLTRDCLAYSKVKP 178 (309)
Q Consensus 100 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~ 178 (309)
++.++..|-.. +-++.+.+|++.-.|. ..|=+-++...+..+++....
T Consensus 204 --~l~~iEeP~~~---------------------------~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~-- 252 (316)
T cd03319 204 --GVELIEQPVPA---------------------------GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAY-- 252 (316)
T ss_pred --CCCEEECCCCC---------------------------CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCC--
Confidence 44455544320 1345677888776666 345555788888888887644
Q ss_pred eEEeeccCCCCC---chHHHHHHHHcCCeEEEeccCCCC
Q 021693 179 VVNQFETHPYFQ---RDSLVKFCQKHGICVTAHTPLGGA 214 (309)
Q Consensus 179 ~~~q~~~~~~~~---~~~ll~~~~~~gi~v~a~~pl~~G 214 (309)
+.+|......-. -..+..+|+++|+.++.++-+..+
T Consensus 253 d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 253 DGINIKLMKTGGLTEALRIADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred CEEEEeccccCCHHHHHHHHHHHHHcCCCEEEECchhhH
Confidence 567777654322 267899999999999987655444
No 21
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=81.84 E-value=5.6 Score=34.69 Aligned_cols=114 Identities=16% Similarity=0.158 Sum_probs=55.5
Q ss_pred cChhhHHHHHHHHHHcCCcEEecCCCCCCHHHH-----------------HHHHHHHHhcCCCCCccEEEEecCCCCCcc
Q 021693 21 MDESNIRDLIINAIKIGYRHIDCAADYRNEAEV-----------------GEALAEAFSTGLVKREDLFITTKLWNSDHG 83 (309)
Q Consensus 21 ~~~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~l-----------------G~~l~~~~~~~~~~R~~~~i~tK~~~~~~~ 83 (309)
++.++..++.+.|-+.||.+|=|.-.-.+-..+ =..|+..-+.| ..++|+|=.
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tg----kPvIlSTG~------ 122 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTG----KPVILSTGM------ 122 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-----S-EEEE-TT------
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhC----CcEEEECCC------
Confidence 788999999999999999999876432110001 01122211122 336676632
Q ss_pred hHHHHHHHHHHhh-CCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCCeeEEeecCC
Q 021693 84 HVLEACKDSLKKL-QLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGISNY 162 (309)
Q Consensus 84 ~i~~~ve~SL~~L-~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~ 162 (309)
.....|++.++.+ ....-++.++|+...++... . +--+..|..|++.=- --||+|.|
T Consensus 123 stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~------------------e---~~NL~~i~~L~~~f~-~~vG~SDH 180 (241)
T PF03102_consen 123 STLEEIERAVEVLREAGNEDLVLLHCVSSYPTPP------------------E---DVNLRVIPTLKERFG-VPVGYSDH 180 (241)
T ss_dssp --HHHHHHHHHHHHHHCT--EEEEEE-SSSS--G------------------G---G--TTHHHHHHHHST-SEEEEEE-
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCCh------------------H---HcChHHHHHHHHhcC-CCEEeCCC
Confidence 2334444444444 22357899999987642110 1 112345555553322 56799999
Q ss_pred CHHH
Q 021693 163 DIFL 166 (309)
Q Consensus 163 ~~~~ 166 (309)
+...
T Consensus 181 t~g~ 184 (241)
T PF03102_consen 181 TDGI 184 (241)
T ss_dssp SSSS
T ss_pred CCCc
Confidence 8753
No 22
>PRK08392 hypothetical protein; Provisional
Probab=81.59 E-value=32 Score=29.23 Aligned_cols=180 Identities=15% Similarity=0.098 Sum_probs=90.3
Q ss_pred hHHHHHHHHHHcCCcEEecCCCCC--CHHHHHHHHHHHHhcCCCCCccE--EEEecCCCCCcchHHHHHHHHHHhhCCCc
Q 021693 25 NIRDLIINAIKIGYRHIDCAADYR--NEAEVGEALAEAFSTGLVKREDL--FITTKLWNSDHGHVLEACKDSLKKLQLDY 100 (309)
Q Consensus 25 ~~~~~l~~A~~~Gin~~DTA~~Yg--sE~~lG~~l~~~~~~~~~~R~~~--~i~tK~~~~~~~~i~~~ve~SL~~L~~d~ 100 (309)
...++++.|.+.|++.+=.+++.. ....+...++...+.. .+.++ .+..-+.... +. ....++.+++ .||
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~--~~~~i~il~GiE~~~~~-~~-~~~~~~~~~~--~D~ 88 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWG--EESEIVVLAGIEANITP-NG-VDITDDFAKK--LDY 88 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHh--hccCceEEEeEEeeecC-Cc-chhHHHHHhh--CCE
Confidence 467889999999999987776642 1122333333221111 11223 3222222111 11 2333444443 355
Q ss_pred eeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCCeeEEeecC-------CC-HHHHHHHHH
Q 021693 101 LDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGISN-------YD-IFLTRDCLA 172 (309)
Q Consensus 101 iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~-------~~-~~~l~~~~~ 172 (309)
+ +.-+|.... .....+-.+.+.++.+.|.+.-+|=-. .. ...++++++
T Consensus 89 v-I~SvH~~~~-----------------------~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~ 144 (215)
T PRK08392 89 V-IASVHEWFG-----------------------RPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILD 144 (215)
T ss_pred E-EEEeecCcC-----------------------CcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHH
Confidence 5 556784211 112445667788888888766555211 11 123333333
Q ss_pred hc---CCCceEEeeccCCCCCchHHHHHHHHcCCeEEEeccCCCCCCCCcccCCccCCCcHHHHHHHHHcCCCHHHH
Q 021693 173 YS---KVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTPLGGAVANTEWFGTVSCLDDPVLKGLAEKYKRTVAQT 246 (309)
Q Consensus 173 ~~---~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~l~~ia~~~~~s~aq~ 246 (309)
.+ +..+.+| .....+...+++.|++.|+.++.-| =+-. ...+-.-+...+++++.|.++.++
T Consensus 145 ~~~~~g~~lEiN---t~~~~p~~~~l~~~~~~G~~~~igS-DAH~--------~~~vg~~~~a~~~~~~~g~~~~~~ 209 (215)
T PRK08392 145 LAEAYGKAFEIS---SRYRVPDLEFIRECIKRGIKLTFAS-DAHR--------PEDVGNVSWSLKVFKKAGGKKEDL 209 (215)
T ss_pred HHHHhCCEEEEe---CCCCCCCHHHHHHHHHcCCEEEEeC-CCCC--------hHHCCcHHHHHHHHHHcCCCHHHe
Confidence 32 3323333 2222345678999999998764333 2111 111111256677888888877654
No 23
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=80.48 E-value=25 Score=30.92 Aligned_cols=66 Identities=15% Similarity=0.070 Sum_probs=46.7
Q ss_pred HHHHHHCCCeeEEee-cCCCHHHHHHHHHhcCCCceEEeeccCCCCCc--hHHHHHHHHcCCeEEEeccC
Q 021693 145 MEDLVSMGLVRSIGI-SNYDIFLTRDCLAYSKVKPVVNQFETHPYFQR--DSLVKFCQKHGICVTAHTPL 211 (309)
Q Consensus 145 L~~l~~~Gkir~iGv-s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~ll~~~~~~gi~v~a~~pl 211 (309)
|.+--++|+. .+|+ .......+.+++...+++++++-.+-.+++.+ ..++..|+.+|+..+++-|-
T Consensus 10 lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~ 78 (256)
T PRK10558 10 FKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPT 78 (256)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCC
Confidence 3344445774 3443 33444566777788889888888888887665 57888899999998888764
No 24
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=79.71 E-value=17 Score=34.06 Aligned_cols=79 Identities=14% Similarity=0.108 Sum_probs=46.1
Q ss_pred ChhhHHHHHHHHHHcCCcEEecCCCCCCHHHHHHHHHHHHhcCCCCCccEEEEecCCCCCcc----hHHHHHHHHHHhhC
Q 021693 22 DESNIRDLIINAIKIGYRHIDCAADYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHG----HVLEACKDSLKKLQ 97 (309)
Q Consensus 22 ~~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~----~i~~~ve~SL~~L~ 97 (309)
+......++++|++.|++++|||.+......+.+..+ +..+.+..-++ .+|. .....+++--+ .
T Consensus 77 p~~~~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~---------~Agit~v~~~G-~dPGi~nv~a~~a~~~~~~--~ 144 (389)
T COG1748 77 PPFVDLTILKACIKTGVDYVDTSYYEEPPWKLDEEAK---------KAGITAVLGCG-FDPGITNVLAAYAAKELFD--E 144 (389)
T ss_pred CchhhHHHHHHHHHhCCCEEEcccCCchhhhhhHHHH---------HcCeEEEcccC-cCcchHHHHHHHHHHHhhc--c
Confidence 3445568999999999999999977654322222222 23344444432 2331 12222222222 5
Q ss_pred CCceeEEEeecCCCC
Q 021693 98 LDYLDLYLVHFPVAT 112 (309)
Q Consensus 98 ~d~iDl~~lH~p~~~ 112 (309)
+++||+|..+.|...
T Consensus 145 i~si~iy~g~~g~~~ 159 (389)
T COG1748 145 IESIDIYVGGLGEHG 159 (389)
T ss_pred ccEEEEEEecCCCCC
Confidence 789999999988763
No 25
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=76.06 E-value=45 Score=29.55 Aligned_cols=102 Identities=11% Similarity=0.009 Sum_probs=64.1
Q ss_pred HHHHHHCCCeeEEeecCCCHHHHHHHHHhcCCCceEEeeccCCCCCc--hHHHHHHHHcCCeEEEeccCCCCCCCCcccC
Q 021693 145 MEDLVSMGLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQR--DSLVKFCQKHGICVTAHTPLGGAVANTEWFG 222 (309)
Q Consensus 145 L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~ 222 (309)
|.+.-++|+.-.=.........+.+++...+++++++-.+..+++.+ ..++..++..|+..+++-|-..
T Consensus 9 lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~--------- 79 (267)
T PRK10128 9 FKEGLRKGEVQIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGS--------- 79 (267)
T ss_pred HHHHHHcCCceEEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCC---------
Confidence 33444457754322334444566677777889888888888887765 5678888899998888876321
Q ss_pred CccCCCcHHHHHHHHHcCCCHHHHHHHHHhcCC--cEEecCCCChhHHHHhhccccc
Q 021693 223 TVSCLDDPVLKGLAEKYKRTVAQTVLRWGIQRN--TAVIPKTSKLERLEENFKVFDF 277 (309)
Q Consensus 223 ~~~~~~~~~l~~ia~~~~~s~aq~al~~~l~~~--~~vi~g~~~~~~l~~n~~~~~~ 277 (309)
...++.+|..| ..++|-..+.++.++.+++..+
T Consensus 80 ----------------------~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rY 114 (267)
T PRK10128 80 ----------------------KPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRY 114 (267)
T ss_pred ----------------------HHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCC
Confidence 12344555555 2455566666666666665554
No 26
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=73.88 E-value=87 Score=30.09 Aligned_cols=115 Identities=12% Similarity=0.048 Sum_probs=63.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCC-CccEEEEecCCC-CCcchHHHHHHHHHHhhCCC----ceeEEEeecCCCCCCCCCC
Q 021693 45 ADYRNEAEVGEALAEAFSTGLVK-REDLFITTKLWN-SDHGHVLEACKDSLKKLQLD----YLDLYLVHFPVATKHTGVG 118 (309)
Q Consensus 45 ~~YgsE~~lG~~l~~~~~~~~~~-R~~~~i~tK~~~-~~~~~i~~~ve~SL~~L~~d----~iDl~~lH~p~~~~~~~~~ 118 (309)
-.||.|+.+-++|....++. + .+=++|.|=+.. .-.+.+..-+++.-++++-+ .+.++.+|.|+....
T Consensus 66 ~VfGG~~~L~~~I~~~~~~~--~~p~~I~V~tTC~~eiIGDDi~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~Gs---- 139 (454)
T cd01973 66 AVFGGAKRVEEGVLVLARRY--PDLRVIPIITTCSTEIIGDDIEGVIRKLNEALKEEFPDREVHLIPVHTPSFKGS---- 139 (454)
T ss_pred eEECcHHHHHHHHHHHHHhc--CCCCEEEEECCchHhhhccCHHHHHHHHHhhhhhccCCCCCeEEEeeCCCcCCC----
Confidence 36788888889998876554 3 344667765422 22355555555543333212 478889998877310
Q ss_pred CCCCCCCcCCccccccCCcHHHHHHHHHH-HHH----CCCeeEEeecC--CCHHHHHHHHHhcCCCceE
Q 021693 119 TTDSALDADGVLEIDTTISLETTWHAMED-LVS----MGLVRSIGISN--YDIFLTRDCLAYSKVKPVV 180 (309)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-l~~----~Gkir~iGvs~--~~~~~l~~~~~~~~~~~~~ 180 (309)
. ......+++++-+ +.. +++|--||-.+ .+.+.++++++..++++.+
T Consensus 140 -----------~----~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v~~ 193 (454)
T cd01973 140 -----------M----VTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEANI 193 (454)
T ss_pred -----------H----HHHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEE
Confidence 0 1123333433332 222 46677776333 2345778888888776543
No 27
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=72.39 E-value=50 Score=28.90 Aligned_cols=61 Identities=13% Similarity=-0.010 Sum_probs=43.3
Q ss_pred HCCCeeEEee-cCCCHHHHHHHHHhcCCCceEEeeccCCCCCc--hHHHHHHHHcCCeEEEeccC
Q 021693 150 SMGLVRSIGI-SNYDIFLTRDCLAYSKVKPVVNQFETHPYFQR--DSLVKFCQKHGICVTAHTPL 211 (309)
Q Consensus 150 ~~Gkir~iGv-s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~ll~~~~~~gi~v~a~~pl 211 (309)
++|+.. +|+ .+.....+.+++...+++++++-.+-.+++.+ ..++..|+..|+..+++-|-
T Consensus 8 ~~g~~~-~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~ 71 (249)
T TIGR03239 8 LARETL-IGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPW 71 (249)
T ss_pred HcCCce-EEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCC
Confidence 346643 443 34444466677777889888888888887665 56888888999988888764
No 28
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=72.23 E-value=54 Score=28.47 Aligned_cols=70 Identities=20% Similarity=0.343 Sum_probs=44.9
Q ss_pred CCCCcccccceeccc---c------ChhhHH----HHHHHHHHcCCcEEecCC--CC---CCHHHHHHHHHH---HHhcC
Q 021693 6 NNGFKMPIIGLGVWR---M------DESNIR----DLIINAIKIGYRHIDCAA--DY---RNEAEVGEALAE---AFSTG 64 (309)
Q Consensus 6 ~tg~~vs~lg~G~~~---~------~~~~~~----~~l~~A~~~Gin~~DTA~--~Y---gsE~~lG~~l~~---~~~~~ 64 (309)
.||+.+|.+||.+.+ + ..+++. +.+..|.+.|||.|--|. .| ++++...+++.. +....
T Consensus 65 etgv~ipSmClSaHRRfPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g~~~a~~lA 144 (287)
T COG3623 65 ETGVRIPSMCLSAHRRFPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEGLKWAVELA 144 (287)
T ss_pred HhCCCccchhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHHHHHHHHHH
Confidence 589999999999965 1 123444 455566788999999984 22 255555555443 22222
Q ss_pred CCCCccEEEEecC
Q 021693 65 LVKREDLFITTKL 77 (309)
Q Consensus 65 ~~~R~~~~i~tK~ 77 (309)
.|.+|.++.-+
T Consensus 145 --~~aqV~lAvEi 155 (287)
T COG3623 145 --ARAQVMLAVEI 155 (287)
T ss_pred --HhhccEEEeee
Confidence 46778888766
No 29
>PRK08609 hypothetical protein; Provisional
Probab=70.21 E-value=1.2e+02 Score=30.13 Aligned_cols=183 Identities=16% Similarity=0.104 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHcCCcEEecCCCCC--------CHHHHHHHH---HHHHhcCCCCCccEEEEecCCCCCcchHHHHHHHHH
Q 021693 25 NIRDLIINAIKIGYRHIDCAADYR--------NEAEVGEAL---AEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSL 93 (309)
Q Consensus 25 ~~~~~l~~A~~~Gin~~DTA~~Yg--------sE~~lG~~l---~~~~~~~~~~R~~~~i~tK~~~~~~~~i~~~ve~SL 93 (309)
...++++.|.+.|++++=.++++. +...+-..+ +.+-+.. ..=+++...-+.... +....-.+..|
T Consensus 350 sleemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~--~~i~Il~GiEv~i~~-~g~~d~~~~~L 426 (570)
T PRK08609 350 SIEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKY--PEIDILSGIEMDILP-DGSLDYDDEVL 426 (570)
T ss_pred CHHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhc--CCCeEEEEEEEeecC-CcchhhcHHHH
Confidence 356799999999999998888752 222222222 2211111 111333333332211 22222233345
Q ss_pred HhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCCeeEEeecC------CC--HH
Q 021693 94 KKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGISN------YD--IF 165 (309)
Q Consensus 94 ~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~------~~--~~ 165 (309)
+. .||+ +.-+|++. ..+..++++.+.++.+.|.+.-||=-. +. ..
T Consensus 427 ~~--~D~v-I~SvH~~~------------------------~~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~ 479 (570)
T PRK08609 427 AE--LDYV-IAAIHSSF------------------------SQSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDV 479 (570)
T ss_pred Hh--hCEE-EEEeecCC------------------------CCCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchH
Confidence 43 4655 66789642 122456778888888888877665332 11 12
Q ss_pred HHHHHHHhcCCCceEEeeccCCCC--CchHHHHHHHHcCCeEEEeccCCCCCCCCcccCCccCCCcHHHHHHHHHcCCCH
Q 021693 166 LTRDCLAYSKVKPVVNQFETHPYF--QRDSLVKFCQKHGICVTAHTPLGGAVANTEWFGTVSCLDDPVLKGLAEKYKRTV 243 (309)
Q Consensus 166 ~l~~~~~~~~~~~~~~q~~~~~~~--~~~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~l~~ia~~~~~s~ 243 (309)
.++++++.+.-.-..++++.+++. ....++..|.+.|+.+.. ++=+.. ...+...+....+|++.+.++
T Consensus 480 d~~~i~~~a~~~G~~lEINa~~~r~~~~~~~~~~~~e~Gv~i~i-gSDAH~--------~~~l~~~~~~v~~ar~~~~~~ 550 (570)
T PRK08609 480 NIDQLIELAKETNTALELNANPNRLDLSAEHLKKAQEAGVKLAI-NTDAHH--------TEMLDDMKYGVATARKGWIQK 550 (570)
T ss_pred HHHHHHHHHHHhCCEEEEcCCccccCccHHHHHHHHHcCCEEEE-ECCCCC--------hhhhCcHHHHHHHHHHcCCCH
Confidence 344444432111246677776543 237789999999987543 322222 112233356667788888877
Q ss_pred HHH
Q 021693 244 AQT 246 (309)
Q Consensus 244 aq~ 246 (309)
.++
T Consensus 551 ~~v 553 (570)
T PRK08609 551 DRV 553 (570)
T ss_pred HHc
Confidence 763
No 30
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=70.08 E-value=88 Score=28.56 Aligned_cols=121 Identities=17% Similarity=0.088 Sum_probs=67.8
Q ss_pred cChhhHHHHHHHHHHcCCcEEecCCCCCC-----------------HHHHHHHHHHHHhcCCCCCccEEEEecCCCCCcc
Q 021693 21 MDESNIRDLIINAIKIGYRHIDCAADYRN-----------------EAEVGEALAEAFSTGLVKREDLFITTKLWNSDHG 83 (309)
Q Consensus 21 ~~~~~~~~~l~~A~~~Gin~~DTA~~Ygs-----------------E~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~ 83 (309)
++.+...++.+.|-+.|+-+|-|--.+.+ |-.-=..|+-..+.+ ..++++|-. .+.+
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~~~----kPiIlSTGm--a~~~ 160 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAKKG----KPIILSTGM--ATIE 160 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHhcC----CCEEEEccc--ccHH
Confidence 57778889999999999999977544331 100001111111122 246666643 2224
Q ss_pred hHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHH-HHHHHHHHHCCCeeEEeecCC
Q 021693 84 HVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETT-WHAMEDLVSMGLVRSIGISNY 162 (309)
Q Consensus 84 ~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~l~~~Gkir~iGvs~~ 162 (309)
.+.++++.-.++ | ..|+.+||+...++ .+.+++ +.+|-.|++.= -.-||+|.|
T Consensus 161 ei~~av~~~r~~-g--~~~i~LLhC~s~YP----------------------ap~ed~NL~~i~~l~~~F-n~~vGlSDH 214 (347)
T COG2089 161 EIEEAVAILREN-G--NPDIALLHCTSAYP----------------------APFEDVNLKAIPKLAEAF-NAIVGLSDH 214 (347)
T ss_pred HHHHHHHHHHhc-C--CCCeEEEEecCCCC----------------------CCHHHhhHHHHHHHHHHh-CCccccccC
Confidence 555555544333 3 34999999976642 222222 34444444443 346999999
Q ss_pred CHHHHHHHHHh
Q 021693 163 DIFLTRDCLAY 173 (309)
Q Consensus 163 ~~~~l~~~~~~ 173 (309)
+...+.-+...
T Consensus 215 T~g~~a~l~Av 225 (347)
T COG2089 215 TLGILAPLAAV 225 (347)
T ss_pred ccchhHHHHHH
Confidence 98755544443
No 31
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=69.32 E-value=1e+02 Score=29.14 Aligned_cols=114 Identities=14% Similarity=0.064 Sum_probs=64.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCccEEEEecCCC-CCcchHHHHHHHHHHhhC-CCceeEEEeecCCCCCCCCCCCCCCC
Q 021693 46 DYRNEAEVGEALAEAFSTGLVKREDLFITTKLWN-SDHGHVLEACKDSLKKLQ-LDYLDLYLVHFPVATKHTGVGTTDSA 123 (309)
Q Consensus 46 ~YgsE~~lG~~l~~~~~~~~~~R~~~~i~tK~~~-~~~~~i~~~ve~SL~~L~-~d~iDl~~lH~p~~~~~~~~~~~~~~ 123 (309)
.||.|..+-++|.+..++. +.+-++|.|=+.. .-.+.+..-+++.-++.. ...+.++.+|.|......
T Consensus 62 V~Gg~~~L~~~i~~~~~~~--~p~~I~v~~tC~~~liGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~~-------- 131 (428)
T cd01965 62 VFGGEDNLIEALKNLLSRY--KPDVIGVLTTCLTETIGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGSH-------- 131 (428)
T ss_pred eECcHHHHHHHHHHHHHhc--CCCEEEEECCcchhhcCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCcH--------
Confidence 4678888889998876654 3445666664322 112455444444333221 013667888888763100
Q ss_pred CCcCCccccccCCcHHHHHHHHHHH-------HHCCCeeEEeecCC---CHHHHHHHHHhcCCCceE
Q 021693 124 LDADGVLEIDTTISLETTWHAMEDL-------VSMGLVRSIGISNY---DIFLTRDCLAYSKVKPVV 180 (309)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~L~~l-------~~~Gkir~iGvs~~---~~~~l~~~~~~~~~~~~~ 180 (309)
......++++|-+. ++.++|--||-++. +...+.++++..++++..
T Consensus 132 -----------~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~ 187 (428)
T cd01965 132 -----------ETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPII 187 (428)
T ss_pred -----------HHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEE
Confidence 11233444444332 23466888876654 356888999988876544
No 32
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=68.72 E-value=78 Score=28.47 Aligned_cols=101 Identities=15% Similarity=0.109 Sum_probs=68.9
Q ss_pred HHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCCee-EEeecCC---CHHHH
Q 021693 92 SLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVR-SIGISNY---DIFLT 167 (309)
Q Consensus 92 SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir-~iGvs~~---~~~~l 167 (309)
..++.| .|++-+|-.+... ... +.+..++.+.|+++-++=+|- -||=|.. ++..+
T Consensus 159 ~Vk~fg---admvTiHlIsTdP-----------------ki~-D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVl 217 (403)
T COG2069 159 CVKKFG---ADMVTIHLISTDP-----------------KIK-DTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVL 217 (403)
T ss_pred HHHHhC---CceEEEEeecCCc-----------------ccc-CCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHH
Confidence 345555 5788888765421 111 667889999999998887765 5677765 46688
Q ss_pred HHHHHhcCCCceEEeeccCCCCCchHHHHHHHHcCCeEEEeccCCCC
Q 021693 168 RDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTPLGGA 214 (309)
Q Consensus 168 ~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~G 214 (309)
+++.+.+.-. .+.-...|+-..-+.+.+.+.++|=.|++|+++--.
T Consensus 218 ekaAEvaEGe-RclLaSanldlDy~~ia~AA~ky~H~VLswt~~D~N 263 (403)
T COG2069 218 EKAAEVAEGE-RCLLASANLDLDYERIAEAALKYDHVVLSWTQMDVN 263 (403)
T ss_pred HHHHHhhcCc-eEEeeccccccCHHHHHHHHHhcCceEEEeeccChH
Confidence 8888877432 333334444333478999999999999999987543
No 33
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=68.12 E-value=25 Score=30.40 Aligned_cols=77 Identities=13% Similarity=0.181 Sum_probs=59.3
Q ss_pred ccChhhHHHHHHHHHHcCCcEEecCCCCC------CHHHHHHHHHHHHhcCCCCCccEEEEecCCCCCc-----------
Q 021693 20 RMDESNIRDLIINAIKIGYRHIDCAADYR------NEAEVGEALAEAFSTGLVKREDLFITTKLWNSDH----------- 82 (309)
Q Consensus 20 ~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg------sE~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~----------- 82 (309)
++++++|.+++..-...||+.==+++.-| .|.-+.+++.- ++.++.||.++.=...+++.+.
T Consensus 27 gL~e~eANemlAlL~~~gI~A~K~~~~~g~~~l~Ve~~~fa~Av~i-L~~~GlPr~~f~~l~d~Fp~dgLVsSP~eEkaR 105 (246)
T COG4669 27 GLSEKEANEMLALLMSHGINAEKKADKDGGTSLLVEESDFAEAVEI-LNQNGLPRKKFTTLGDIFPKDGLVSSPTEEKAR 105 (246)
T ss_pred CCCHhHHHHHHHHHHHcCCcceeeccCCCceEEEEcHHHHHHHHHH-HHhcCCCCCCCCcHHHhCCcccccCCcHHHHHH
Confidence 47899999999999999999888877766 37788888864 4444468888876677665543
Q ss_pred --chHHHHHHHHHHhhC
Q 021693 83 --GHVLEACKDSLKKLQ 97 (309)
Q Consensus 83 --~~i~~~ve~SL~~L~ 97 (309)
..+.++++++|+.+.
T Consensus 106 ~~~~~eQ~le~tLs~mD 122 (246)
T COG4669 106 LNYAKEQQLEQTLSKMD 122 (246)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 356788999999885
No 34
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=68.12 E-value=82 Score=29.47 Aligned_cols=95 Identities=15% Similarity=0.122 Sum_probs=61.9
Q ss_pred ceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHC-CCeeEEeec---CCCHHHHHHHHHhcC
Q 021693 100 YLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSM-GLVRSIGIS---NYDIFLTRDCLAYSK 175 (309)
Q Consensus 100 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-Gkir~iGvs---~~~~~~l~~~~~~~~ 175 (309)
..|++.||.-+... ++ . +.+.++..+..++..+. +.=--|+=| ..+++.++++++...
T Consensus 153 ~aD~Ialr~~S~DP-------------~~----~-d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~ 214 (389)
T TIGR00381 153 GADMVTIHLISTDP-------------KL----D-DKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLEKAAEVAE 214 (389)
T ss_pred CCCEEEEEecCCCc-------------cc----c-ccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHHHHHHHhC
Confidence 47899998754410 00 0 34455666676666433 332234333 568889999999885
Q ss_pred C-CceEEeeccCCCCCchHHHHHHHHcCCeEEEeccCCCC
Q 021693 176 V-KPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTPLGGA 214 (309)
Q Consensus 176 ~-~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~G 214 (309)
- +|.++-.+... .-+.+...|+++|..+++++|..-+
T Consensus 215 G~kpLL~SAt~e~--Ny~~ia~lAk~yg~~Vvv~s~~Din 252 (389)
T TIGR00381 215 GERCLLASANLDL--DYEKIANAAKKYGHVVLSWTIMDIN 252 (389)
T ss_pred CCCcEEEecCchh--hHHHHHHHHHHhCCeEEEEcCCcHH
Confidence 4 66666555431 2367999999999999999987655
No 35
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=67.56 E-value=89 Score=27.67 Aligned_cols=127 Identities=20% Similarity=0.141 Sum_probs=69.9
Q ss_pred CcHHHHHHHHHHHHHCCCeeEEeecCC-CH---HHHHHHHHhc-CCCceEEeeccCCCCCchHHHHHHHHcCCeEEEecc
Q 021693 136 ISLETTWHAMEDLVSMGLVRSIGISNY-DI---FLTRDCLAYS-KVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTP 210 (309)
Q Consensus 136 ~~~~~~~~~L~~l~~~Gkir~iGvs~~-~~---~~l~~~~~~~-~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~p 210 (309)
...+++++.+++.++++.---|++-+| ++ .-++++++.+ +...+-+-++=-+.....++.+.|+++||..+-.-+
T Consensus 76 ~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lva 155 (265)
T COG0159 76 VTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVA 155 (265)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeC
Confidence 456788889999987755434444443 22 1334433332 112233333333444457799999999998876544
Q ss_pred CCCCCCCCcccCCccCCCcHHHHHHHHHc----------CCC--------HHHHHHHHHhcC---CcEEecCCCChhHHH
Q 021693 211 LGGAVANTEWFGTVSCLDDPVLKGLAEKY----------KRT--------VAQTVLRWGIQR---NTAVIPKTSKLERLE 269 (309)
Q Consensus 211 l~~G~l~~~~~~~~~~~~~~~l~~ia~~~----------~~s--------~aq~al~~~l~~---~~~vi~g~~~~~~l~ 269 (309)
-. ..++.++++++.- |+| ...-.++.+.+. |..+=.|.|+++|++
T Consensus 156 Pt--------------t~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~ 221 (265)
T COG0159 156 PT--------------TPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAA 221 (265)
T ss_pred CC--------------CCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHH
Confidence 22 2334555555443 211 123344444433 455556788888888
Q ss_pred Hhhcccc
Q 021693 270 ENFKVFD 276 (309)
Q Consensus 270 ~n~~~~~ 276 (309)
+..++.+
T Consensus 222 ~v~~~AD 228 (265)
T COG0159 222 QVAEAAD 228 (265)
T ss_pred HHHHhCC
Confidence 8877644
No 36
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=66.82 E-value=3.8 Score=37.69 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=35.0
Q ss_pred CCeeEEeecCCCHHHHHHHHHhcCCCceEE--eeccCCCCCchHHHHHHHHcCCe
Q 021693 152 GLVRSIGISNYDIFLTRDCLAYSKVKPVVN--QFETHPYFQRDSLVKFCQKHGIC 204 (309)
Q Consensus 152 Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~--q~~~~~~~~~~~ll~~~~~~gi~ 204 (309)
|+||++||--++++.+.++.+.... -.+. |...-+.-.+..+++.+++.||+
T Consensus 264 GriRYlGVlLYDaDrv~eaAs~~~e-~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 264 GRIRYLGVLLYDADRVEEAASTENE-KDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred cceeeeeeeeecHHHHHHhhcCccH-HHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 9999999999999998887665431 2222 33322222246788888888874
No 37
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=64.69 E-value=1.1e+02 Score=27.49 Aligned_cols=107 Identities=9% Similarity=0.064 Sum_probs=69.3
Q ss_pred CeeEEeecCCCHHHHHHHHHhcCCCceEEeeccCC-C-----CCchHHHHHHHHcCCeEEEeccCCCCCCCCcccCCccC
Q 021693 153 LVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHP-Y-----FQRDSLVKFCQKHGICVTAHTPLGGAVANTEWFGTVSC 226 (309)
Q Consensus 153 kir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~-~-----~~~~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~ 226 (309)
++.++-=++.+.+...+......-.+-..|.+... . .+++.+.+.+.+-++-++.-++-...
T Consensus 159 ~l~~~tQTTls~ddt~~Iv~~l~~r~p~~~~~~~~~ICyAT~nRQ~Avk~la~~~Dl~iVVG~~nSSN------------ 226 (294)
T COG0761 159 KLAFVTQTTLSVDDTAEIVAALKERFPKIEVPPFNDICYATQNRQDAVKELAPEVDLVIVVGSKNSSN------------ 226 (294)
T ss_pred cEEEEeeeecCHHHHHHHHHHHHHhCccccCCcccccchhhhhHHHHHHHHhhcCCEEEEECCCCCcc------------
Confidence 55555545555555544444432111112222221 1 23467888888888888776654332
Q ss_pred CCcHHHHHHHHHcCC------CHHHHHHHHHhcCC-cEEecCCCChhHHHHhhc
Q 021693 227 LDDPVLKGLAEKYKR------TVAQTVLRWGIQRN-TAVIPKTSKLERLEENFK 273 (309)
Q Consensus 227 ~~~~~l~~ia~~~~~------s~aq~al~~~l~~~-~~vi~g~~~~~~l~~n~~ 273 (309)
...|.++|++.|. ++.++-..|+-... +.+-.|+|.|+-|-+++-
T Consensus 227 --s~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~~VGvTAGAStPd~lV~~Vi 278 (294)
T COG0761 227 --SNRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVKTVGVTAGASTPDWLVQEVI 278 (294)
T ss_pred --HHHHHHHHHHhCCCeEEeCChHhCCHHHhcCccEEEEecCCCCCHHHHHHHH
Confidence 3689999999986 67888889988866 677889999999887764
No 38
>PRK05414 urocanate hydratase; Provisional
Probab=60.29 E-value=31 Score=33.32 Aligned_cols=127 Identities=18% Similarity=0.143 Sum_probs=84.2
Q ss_pred HHHHHHHHcCCcEE--ecCCCC---C-------CHHHHHHHHHHHHhcCCCCCccEEEEecCCCCCcch-----------
Q 021693 28 DLIINAIKIGYRHI--DCAADY---R-------NEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGH----------- 84 (309)
Q Consensus 28 ~~l~~A~~~Gin~~--DTA~~Y---g-------sE~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~----------- 84 (309)
+-++..-+.|+.-+ =||.+| | .-+.+..+-++.+. + .-+.++||++-++..+..+
T Consensus 116 e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~-g-~L~G~~~lTaGLGGMgGAQPlA~~mag~v~ 193 (556)
T PRK05414 116 EHFNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFG-G-DLAGRLVLTAGLGGMGGAQPLAATMAGAVC 193 (556)
T ss_pred HHHHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcC-C-CCceeEEEEecCCccccccHHHHHhcCceE
Confidence 44677777887755 355554 3 23445555555442 2 3578899998886554311
Q ss_pred H--HHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCCeeEEeecCC
Q 021693 85 V--LEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGISNY 162 (309)
Q Consensus 85 i--~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~ 162 (309)
+ .-.-.+.-+|+.+.|+|.+ ...++++++..++.+++|+..+||+-..
T Consensus 194 i~vEvd~~ri~kR~~~gyld~~------------------------------~~~Ldeal~~~~~a~~~~~~~SIg~~GN 243 (556)
T PRK05414 194 LAVEVDESRIDKRLRTGYLDEK------------------------------ADDLDEALALAEEAKAAGEPLSIGLLGN 243 (556)
T ss_pred EEEEECHHHHHHHHhCCcceeE------------------------------cCCHHHHHHHHHHHHHcCCceEEEEecc
Confidence 0 1112344578999999985 3347899999999999999999999998
Q ss_pred CHHHHHHHHHhc-CCCceEEeeccC
Q 021693 163 DIFLTRDCLAYS-KVKPVVNQFETH 186 (309)
Q Consensus 163 ~~~~l~~~~~~~-~~~~~~~q~~~~ 186 (309)
-++.++++.+.. .++....|...+
T Consensus 244 aadv~~~l~~~~i~pDlvtDQTSaH 268 (556)
T PRK05414 244 AADVLPELVRRGIRPDLVTDQTSAH 268 (556)
T ss_pred HHHHHHHHHHcCCCCCccCcCcccc
Confidence 888888888774 233344555543
No 39
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=60.03 E-value=57 Score=28.30 Aligned_cols=97 Identities=11% Similarity=0.099 Sum_probs=56.1
Q ss_pred HHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCC-CeeEEeecCCCHH
Q 021693 87 EACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMG-LVRSIGISNYDIF 165 (309)
Q Consensus 87 ~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-kir~iGvs~~~~~ 165 (309)
..+=+.|..+|+++|.+-..-.+... ....+.++.++.+++.+ .++...++.-...
T Consensus 22 ~~i~~~L~~~GV~~IEvg~~~~~~~~-----------------------p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~ 78 (265)
T cd03174 22 LEIAEALDEAGVDSIEVGSGASPKAV-----------------------PQMEDDWEVLRAIRKLVPNVKLQALVRNREK 78 (265)
T ss_pred HHHHHHHHHcCCCEEEeccCcCcccc-----------------------ccCCCHHHHHHHHHhccCCcEEEEEccCchh
Confidence 34445577899999988654432110 01134667788888887 5666666665555
Q ss_pred HHHHHHHhcCCCceEEeeccCCC----------------CCchHHHHHHHHcCCeEEEec
Q 021693 166 LTRDCLAYSKVKPVVNQFETHPY----------------FQRDSLVKFCQKHGICVTAHT 209 (309)
Q Consensus 166 ~l~~~~~~~~~~~~~~q~~~~~~----------------~~~~~ll~~~~~~gi~v~a~~ 209 (309)
.++.+.+.. + ..+++....- ..-...+++++++|+.+...-
T Consensus 79 ~i~~a~~~g-~--~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 79 GIERALEAG-V--DEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred hHHHHHhCC-c--CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 566555543 2 3344333322 001456788889998766554
No 40
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=59.17 E-value=32 Score=33.12 Aligned_cols=128 Identities=17% Similarity=0.099 Sum_probs=84.2
Q ss_pred HHHHHHHHHcCCcEE--ecCCCC---C-------CHHHHHHHHHHHHhcCCCCCccEEEEecCCCCCcch----------
Q 021693 27 RDLIINAIKIGYRHI--DCAADY---R-------NEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGH---------- 84 (309)
Q Consensus 27 ~~~l~~A~~~Gin~~--DTA~~Y---g-------sE~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~---------- 84 (309)
-+-++..-+.|++-+ =||.+| | .-+.+..+-++.+. ..-+.++||++-++..+..+
T Consensus 106 ~e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~--~~L~G~~~lTaGLGGMgGAQPlA~~mag~v 183 (545)
T TIGR01228 106 WEHFHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFG--GSLKGKWVLTAGLGGMGGAQPLAVTMNGGV 183 (545)
T ss_pred HHHHHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcC--CCCceeEEEEeCCCccccccHHHHHHcCce
Confidence 345677778888765 355544 3 23445555555442 22578889888876554311
Q ss_pred -H--HHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCCeeEEeecC
Q 021693 85 -V--LEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGISN 161 (309)
Q Consensus 85 -i--~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~ 161 (309)
+ .-.-.+.-+|+.+.|+|.+ ...++++++..++.+++|+..+||+-.
T Consensus 184 ~i~vEvd~~ri~kR~~~gyld~~------------------------------~~~ldeal~~~~~a~~~~~~~SIg~~G 233 (545)
T TIGR01228 184 SIAVEVDESRIDKRLETKYCDEQ------------------------------TDSLDEALARAEEAKAEGKPISIGLLG 233 (545)
T ss_pred EEEEEECHHHHHHHHhcCcceeE------------------------------cCCHHHHHHHHHHHHHcCCceEEEeec
Confidence 1 1112334478899999985 334789999999999999999999999
Q ss_pred CCHHHHHHHHHhc-CCCceEEeeccC
Q 021693 162 YDIFLTRDCLAYS-KVKPVVNQFETH 186 (309)
Q Consensus 162 ~~~~~l~~~~~~~-~~~~~~~q~~~~ 186 (309)
.-++.++++.+.. .+++...|...+
T Consensus 234 Naadv~~~l~~r~i~pDlvtDQTSaH 259 (545)
T TIGR01228 234 NAAEVLPELLKRGVVPDVVTDQTSAH 259 (545)
T ss_pred cHHHHHHHHHHcCCCCCCcCCCCccc
Confidence 8888899988864 233344555443
No 41
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=58.89 E-value=64 Score=28.88 Aligned_cols=98 Identities=14% Similarity=0.094 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCCeeEEeecCCCH
Q 021693 85 VLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGISNYDI 164 (309)
Q Consensus 85 i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~ 164 (309)
-+..+-+.|.++|+++|.+-.+++|.... . ..+.++.+..+.+...++...+. .+.
T Consensus 27 ~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p---------------------~--~~d~~e~~~~l~~~~~~~~~~l~-~~~ 82 (287)
T PRK05692 27 DKIALIDRLSAAGLSYIEVASFVSPKWVP---------------------Q--MADAAEVMAGIQRRPGVTYAALT-PNL 82 (287)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCcCccccc---------------------c--cccHHHHHHhhhccCCCeEEEEe-cCH
Confidence 34556677899999999997555553210 1 11234555555544445555554 467
Q ss_pred HHHHHHHHhcCCCceEEeeccCCCC------C--c------hHHHHHHHHcCCeEEE
Q 021693 165 FLTRDCLAYSKVKPVVNQFETHPYF------Q--R------DSLVKFCQKHGICVTA 207 (309)
Q Consensus 165 ~~l~~~~~~~~~~~~~~q~~~~~~~------~--~------~~ll~~~~~~gi~v~a 207 (309)
..++.+++.. ++....-++.|... . + ...+++++++|+.+.+
T Consensus 83 ~~ie~A~~~g-~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 83 KGLEAALAAG-ADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred HHHHHHHHcC-CCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 7777777653 33222223333110 1 0 3688999999998763
No 42
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=58.48 E-value=1.6e+02 Score=28.52 Aligned_cols=125 Identities=10% Similarity=0.070 Sum_probs=67.2
Q ss_pred CCcHHHHHHHHHHHHHCCCeeEEeecC----CCHHHHHHHHHhc---C-CCc-eEEeeccCCCCCchHHHHHHHHcCCeE
Q 021693 135 TISLETTWHAMEDLVSMGLVRSIGISN----YDIFLTRDCLAYS---K-VKP-VVNQFETHPYFQRDSLVKFCQKHGICV 205 (309)
Q Consensus 135 ~~~~~~~~~~L~~l~~~Gkir~iGvs~----~~~~~l~~~~~~~---~-~~~-~~~q~~~~~~~~~~~ll~~~~~~gi~v 205 (309)
..+.+.+++.++.++++..++++-++. .+...+.++++.. + ... ...+...+....+.++++..++.|+.-
T Consensus 221 ~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~~~ 300 (497)
T TIGR02026 221 HRDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAGLVH 300 (497)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhCCcE
Confidence 346788999999998876678776653 2344444443321 1 221 123444444444578999999999876
Q ss_pred EEeccCCCCCCCCcccCCccCCCcHHHHHHHHHcCCCHHHHHHHHHhcCC----cEEecC--CCChhHHHHhhc
Q 021693 206 TAHTPLGGAVANTEWFGTVSCLDDPVLKGLAEKYKRTVAQTVLRWGIQRN----TAVIPK--TSKLERLEENFK 273 (309)
Q Consensus 206 ~a~~pl~~G~l~~~~~~~~~~~~~~~l~~ia~~~~~s~aq~al~~~l~~~----~~vi~g--~~~~~~l~~n~~ 273 (309)
+..+.=.+ ..+.++.+.+.+......-+++.+.+.| ...|+| ..+.+.+++.++
T Consensus 301 v~iGiES~--------------~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~ 360 (497)
T TIGR02026 301 ISLGTEAA--------------AQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYR 360 (497)
T ss_pred EEEccccC--------------CHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHH
Confidence 55543221 1234444433322222333455555555 234555 345566666654
No 43
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=58.33 E-value=1.8e+02 Score=28.00 Aligned_cols=127 Identities=11% Similarity=0.063 Sum_probs=70.2
Q ss_pred HcCCcEEecC-----CCCCCHHHHHHHHHHHHhcCCCCCccEEEEecCCC-CCcchHHHHHHHHHHhhCCC----ceeEE
Q 021693 35 KIGYRHIDCA-----ADYRNEAEVGEALAEAFSTGLVKREDLFITTKLWN-SDHGHVLEACKDSLKKLQLD----YLDLY 104 (309)
Q Consensus 35 ~~Gin~~DTA-----~~YgsE~~lG~~l~~~~~~~~~~R~~~~i~tK~~~-~~~~~i~~~ve~SL~~L~~d----~iDl~ 104 (309)
+.+++.+=|+ -.||.|+.+-++|++..++. ...+=++|.|=+.. .-.+.+..-+++.-++|.-+ .+.++
T Consensus 54 ~e~~~~~sT~l~E~dvVfGG~~kL~~aI~~~~~~~-~~p~~I~V~ttC~~eiIGDDi~~v~~~~~~~~~~e~~~~~~~vv 132 (457)
T TIGR02932 54 KENFDIASTSLHEESAVFGGAKRIEEGVLTLARRY-PNLRVIPIITTCSTETIGDDIEGSIRKVNRALKKEFPDRKIKLV 132 (457)
T ss_pred CCCCccccccCCCCceEECcHHHHHHHHHHHHHhC-CCCCEEEEECCchHHhhcCCHHHHHHHHHhhhhhhcCCCCCeEE
Confidence 4454444333 35788888999999876654 11344666665422 12355555555543333222 47889
Q ss_pred EeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHH------HCCCeeEEeecCC--CHHHHHHHHHhcCC
Q 021693 105 LVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLV------SMGLVRSIGISNY--DIFLTRDCLAYSKV 176 (309)
Q Consensus 105 ~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~------~~Gkir~iGvs~~--~~~~l~~~~~~~~~ 176 (309)
.+|.|+..... ....+.++++|-+.. .+++|--||-.+. +.+.++++++..++
T Consensus 133 ~v~tpgF~gs~-------------------~~G~~~a~~ali~~~~~~~~~~~~~VNii~~~~~~gD~~eik~lL~~~Gl 193 (457)
T TIGR02932 133 PVHTPSFKGSQ-------------------VTGYAECVKSVIKTIAAKKGEPSGKLNVFPGWVNPGDVVLLKHYFSEMGV 193 (457)
T ss_pred EeeCCCCcCcH-------------------HHHHHHHHHHHHHHHhhccCCCCCcEEEECCCCChHHHHHHHHHHHHcCC
Confidence 99998773210 122344454444322 2366777764332 44578888888877
Q ss_pred CceEE
Q 021693 177 KPVVN 181 (309)
Q Consensus 177 ~~~~~ 181 (309)
++.++
T Consensus 194 ~vn~l 198 (457)
T TIGR02932 194 DANIL 198 (457)
T ss_pred CEEEE
Confidence 65543
No 44
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=57.96 E-value=1.7e+02 Score=27.71 Aligned_cols=115 Identities=14% Similarity=0.077 Sum_probs=64.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCC-ccEEEEecCCCC-CcchHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCC
Q 021693 46 DYRNEAEVGEALAEAFSTGLVKR-EDLFITTKLWNS-DHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSA 123 (309)
Q Consensus 46 ~YgsE~~lG~~l~~~~~~~~~~R-~~~~i~tK~~~~-~~~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~ 123 (309)
.||.+..+-++|++..++. ++ +-++|.|=+... -.+.+..-+++.-++++ ++++.+|.|........
T Consensus 79 VfGg~~kL~~~I~~~~~~~--~p~~~I~V~tTC~~~iIGdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~s~~------ 147 (421)
T cd01976 79 VFGGDKKLAKAIDEAYELF--PLNKGISVQSECPVGLIGDDIEAVARKASKELG---IPVVPVRCEGFRGVSQS------ 147 (421)
T ss_pred ecCCHHHHHHHHHHHHHhC--CCccEEEEECCChHHHhccCHHHHHHHHHHhhC---CCEEEEeCCCccCCccc------
Confidence 5788888999999877765 34 557777654221 12555555555555554 57889998876210000
Q ss_pred CCcCCccccccCCcHHHHHHHHHHHH-----HCCCeeEEeecCC--CHHHHHHHHHhcCCCce
Q 021693 124 LDADGVLEIDTTISLETTWHAMEDLV-----SMGLVRSIGISNY--DIFLTRDCLAYSKVKPV 179 (309)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~L~~l~-----~~Gkir~iGvs~~--~~~~l~~~~~~~~~~~~ 179 (309)
.| + ....+.+++.|.... ..++|--||-.++ +...++++++..++++.
T Consensus 148 ---~G---~--~~a~~ai~~~l~~~~~~~~~~~~~VNiiG~~~~~~d~~el~~lL~~~Gi~v~ 202 (421)
T cd01976 148 ---LG---H--HIANDAIRDHILGKRNEFEPTPYDVNIIGDYNIGGDAWASRILLEEMGLRVV 202 (421)
T ss_pred ---HH---H--HHHHHHHHHHHhccCCccCCCCCeEEEEecCCCCccHHHHHHHHHHcCCeEE
Confidence 00 0 111222333333211 1366888885554 34578888888887654
No 45
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=57.37 E-value=1.5e+02 Score=26.84 Aligned_cols=130 Identities=15% Similarity=0.194 Sum_probs=68.5
Q ss_pred cChhhHHHHHHHHHHcCCcEEecCCCCC-CHHHHHHHHHHHHhcCCCCCccEEEEecCCCCCcchHHHHHHHHHHhhCCC
Q 021693 21 MDESNIRDLIINAIKIGYRHIDCAADYR-NEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKKLQLD 99 (309)
Q Consensus 21 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg-sE~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~i~~~ve~SL~~L~~d 99 (309)
++.++..++++.+.+.|++.+.-...-- -..-+-+.++.+.+.. .-.++.|+|-.. .+.+. -+.|...|.+
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~l~~li~~i~~~~--~~~~i~itTNG~-----ll~~~-~~~L~~agl~ 120 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLTGGEPLLRKDLEDIIAALAALP--GIRDLALTTNGY-----LLARR-AAALKDAGLD 120 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCcCccCHHHHHHHHHhcC--CCceEEEEcCch-----hHHHH-HHHHHHcCCC
Confidence 5677888999999999998876543110 1122344444421111 123577777532 12222 2345555655
Q ss_pred ceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCC----eeEEeecCCCHHHHHHHHHhc
Q 021693 100 YLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGL----VRSIGISNYDIFLTRDCLAYS 174 (309)
Q Consensus 100 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk----ir~iGvs~~~~~~l~~~~~~~ 174 (309)
.+- +-+|..+.... ....+ ...+++++++++.+++.|. |..+.+...+.+.+.++.+..
T Consensus 121 ~i~-ISlds~~~e~~---------~~i~~------~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~ 183 (331)
T PRK00164 121 RVN-VSLDSLDPERF---------KAITG------RDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWA 183 (331)
T ss_pred EEE-EEeccCCHHHh---------ccCCC------CCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHH
Confidence 442 33454432100 00000 2357889999999999885 224444455556666555544
No 46
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=57.34 E-value=1.6e+02 Score=27.08 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=29.7
Q ss_pred eecCCCCcccccceeccccChhhHHHHHHHHHHcCCcEEecC
Q 021693 3 ITLNNGFKMPIIGLGVWRMDESNIRDLIINAIKIGYRHIDCA 44 (309)
Q Consensus 3 ~~l~tg~~vs~lg~G~~~~~~~~~~~~l~~A~~~Gin~~DTA 44 (309)
++|+.|.+... |+++.++..++++..-++||..|+.+
T Consensus 9 ~TLRDG~q~~~-----~~f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 9 VTLRDGMHAVR-----HQYTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred CCCCCcCcCCC-----CccCHHHHHHHHHHHHHcCCCEEEee
Confidence 45788877653 45668889999999999999999995
No 47
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=56.09 E-value=87 Score=27.99 Aligned_cols=114 Identities=12% Similarity=0.117 Sum_probs=72.9
Q ss_pred HHHHHHHCCCeeEEeecCCCHHHHHHHHHhcC--CCceEEeeccCCCC-----CchHHHHHHHHcCCeEEEeccCCCCCC
Q 021693 144 AMEDLVSMGLVRSIGISNYDIFLTRDCLAYSK--VKPVVNQFETHPYF-----QRDSLVKFCQKHGICVTAHTPLGGAVA 216 (309)
Q Consensus 144 ~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~--~~~~~~q~~~~~~~-----~~~~ll~~~~~~gi~v~a~~pl~~G~l 216 (309)
.++.|....++..+-=++.+.+....+.+... ++..-..+ +|-.| ++..+.+++++-++-++.-+.
T Consensus 146 d~~~l~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~-~nTIC~AT~~RQ~a~~~la~~vD~miVVGg~------ 218 (280)
T TIGR00216 146 DLENFKVEDLLGVVSQTTLSQEDTKEIVAELKARVPQKEVPV-FNTICYATQNRQDAVKELAPEVDLMIVIGGK------ 218 (280)
T ss_pred HHHhCCCCCcEEEEEcCCCcHHHHHHHHHHHHHhCCCcCCCC-CCCcccccHHHHHHHHHHHhhCCEEEEECCC------
Confidence 44555445666666667777776665555432 21011111 22222 236788889988877665332
Q ss_pred CCcccCCccCCCcHHHHHHHHHcCC------CHHHHHHHHHhcCC-cEEecCCCChhHHHHhh
Q 021693 217 NTEWFGTVSCLDDPVLKGLAEKYKR------TVAQTVLRWGIQRN-TAVIPKTSKLERLEENF 272 (309)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~ia~~~~~------s~aq~al~~~l~~~-~~vi~g~~~~~~l~~n~ 272 (309)
+.-.-..|.++|++.+. +..++-..|.-... +.+..|+|+|+.+-+.+
T Consensus 219 --------nSsNT~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~VGiTAGASTP~~li~eV 273 (280)
T TIGR00216 219 --------NSSNTTRLYEIAEEHGPPSYLIETAEELPEEWLKGVKVVGITAGASTPDWIIEEV 273 (280)
T ss_pred --------CCchHHHHHHHHHHhCCCEEEECChHHCCHHHhCCCCEEEEEecCCCCHHHHHHH
Confidence 22234689999999873 77899999988665 67889999999886654
No 48
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=55.98 E-value=1.4e+02 Score=26.07 Aligned_cols=99 Identities=12% Similarity=0.072 Sum_probs=60.4
Q ss_pred HHHHCCCee-EEeecCCCHHHHHHHHHhcCCCceEEeeccCCCCCc--hHHHHHHHHcCCeEEEeccCCCCCCCCcccCC
Q 021693 147 DLVSMGLVR-SIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQR--DSLVKFCQKHGICVTAHTPLGGAVANTEWFGT 223 (309)
Q Consensus 147 ~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~ 223 (309)
+.-++|+.- ...+..-++ .+.+.....+++..++-.+-++++.+ ..++..|+..|+.++++-|-..
T Consensus 5 ~~l~~g~~~~g~~~~~~~p-~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~---------- 73 (249)
T TIGR02311 5 QALKEGQPQIGLWLGLADP-YAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGD---------- 73 (249)
T ss_pred HHHHCCCceEEEEEeCCCc-HHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCC----------
Confidence 334457742 233333344 44444555668888888888876543 3467777777888777754221
Q ss_pred ccCCCcHHHHHHHHHcCCCHHHHHHHHHhcCC--cEEecCCCChhHHHHhhccccc
Q 021693 224 VSCLDDPVLKGLAEKYKRTVAQTVLRWGIQRN--TAVIPKTSKLERLEENFKVFDF 277 (309)
Q Consensus 224 ~~~~~~~~l~~ia~~~~~s~aq~al~~~l~~~--~~vi~g~~~~~~l~~n~~~~~~ 277 (309)
. .-++.++..| ..++|-..+++++++.+++..+
T Consensus 74 -------------------~--~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y 108 (249)
T TIGR02311 74 -------------------P--VLIKQLLDIGAQTLLVPMIETAEQAEAAVAATRY 108 (249)
T ss_pred -------------------H--HHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 1 1456666666 3667777777777777776654
No 49
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=54.99 E-value=2.1e+02 Score=27.72 Aligned_cols=120 Identities=13% Similarity=0.093 Sum_probs=68.3
Q ss_pred eeccccChhhHHHHHHHHHHcCCcEEecCCCCCCHHHHHHHHHHHHhcCCCCCccEEEEecCCCC-CcchHHHHHHHHHH
Q 021693 16 LGVWRMDESNIRDLIINAIKIGYRHIDCAADYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNS-DHGHVLEACKDSLK 94 (309)
Q Consensus 16 ~G~~~~~~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~-~~~~i~~~ve~SL~ 94 (309)
+|.-..+++-....++.|.+.||..|=.++.-...+.+-.+++..-+.|. .-++.|+-...+. +.+++.+.+++ +.
T Consensus 97 vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~--~~~~~i~yt~sp~~t~~y~~~~a~~-l~ 173 (468)
T PRK12581 97 LGYRHYADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGK--EAQLCIAYTTSPVHTLNYYLSLVKE-LV 173 (468)
T ss_pred cCccCCcchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCC--EEEEEEEEEeCCcCcHHHHHHHHHH-HH
Confidence 33334556667778999999999988887766545555566655433552 2223333332221 12445555555 44
Q ss_pred hhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCCeeEEeecCCCHH
Q 021693 95 KLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGISNYDIF 165 (309)
Q Consensus 95 ~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~ 165 (309)
.+|.| .+.|-.... .....++.+.+..+++... .-||+-.|+..
T Consensus 174 ~~Gad---~I~IkDtaG-----------------------~l~P~~v~~Lv~alk~~~~-~pi~~H~Hnt~ 217 (468)
T PRK12581 174 EMGAD---SICIKDMAG-----------------------ILTPKAAKELVSGIKAMTN-LPLIVHTHATS 217 (468)
T ss_pred HcCCC---EEEECCCCC-----------------------CcCHHHHHHHHHHHHhccC-CeEEEEeCCCC
Confidence 57764 444443211 3345566666777776554 35888888754
No 50
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=54.62 E-value=1.1e+02 Score=28.04 Aligned_cols=52 Identities=19% Similarity=0.195 Sum_probs=38.0
Q ss_pred EeecCC---CHHHHHHHHHhcC-CCceEEeeccCCCCCchHHHHHHHHcCCeEEEeccC
Q 021693 157 IGISNY---DIFLTRDCLAYSK-VKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTPL 211 (309)
Q Consensus 157 iGvs~~---~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl 211 (309)
|..|.. +++.++++++..+ -+|.++-.... +-+.+.+.|+++|..|++.+|.
T Consensus 129 Id~s~n~~kD~evleaale~~~g~~pLInSat~e---n~~~i~~lA~~y~~~Vva~s~~ 184 (319)
T PRK04452 129 IGGSGNPEKDAEVLEKVAEAAEGERCLLGSAEED---NYKKIAAAAMAYGHAVIAWSPL 184 (319)
T ss_pred EecCCCCCCCHHHHHHHHHHhCCCCCEEEECCHH---HHHHHHHHHHHhCCeEEEEcHH
Confidence 555533 7889999999876 34666555532 2367999999999999999864
No 51
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=54.40 E-value=1.1e+02 Score=29.10 Aligned_cols=75 Identities=21% Similarity=0.215 Sum_probs=42.1
Q ss_pred CCCcchHHHHHHHHHHhhCCCceeEEEe-ecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHH-HHHHHHCCCeeE
Q 021693 79 NSDHGHVLEACKDSLKKLQLDYLDLYLV-HFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHA-MEDLVSMGLVRS 156 (309)
Q Consensus 79 ~~~~~~i~~~ve~SL~~L~~d~iDl~~l-H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-L~~l~~~Gkir~ 156 (309)
..+.+.+.+.+++.++ |+.|+|.+|.+ |-|........ . .+. ...+.....+.++. .+.|.+.|- ++
T Consensus 200 ~QT~~~~~~~l~~a~~-l~pdhis~y~L~~~p~t~~~~~~------~--~~~-~lP~~d~~~~~~~~~~e~L~~~Gy-~~ 268 (416)
T COG0635 200 GQTLESLKEDLEQALE-LGPDHLSLYSLAIEPGTKFAQRK------I--KGK-ALPDEDEKADMYELVEELLEKAGY-RQ 268 (416)
T ss_pred CCCHHHHHHHHHHHHh-CCCCEEEEeeeecCCCchhhhhc------c--cCC-CCcChHHHHHHHHHHHHHHHHCCC-cE
Confidence 3444677777777776 88999999966 55544211100 0 000 00001112234444 344556677 99
Q ss_pred EeecCCCH
Q 021693 157 IGISNYDI 164 (309)
Q Consensus 157 iGvs~~~~ 164 (309)
+|+|||..
T Consensus 269 yeisnfa~ 276 (416)
T COG0635 269 YEISNFAK 276 (416)
T ss_pred EeechhcC
Confidence 99999976
No 52
>PRK07945 hypothetical protein; Provisional
Probab=54.09 E-value=1.8e+02 Score=26.69 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHHcCCcEEecCCCC
Q 021693 23 ESNIRDLIINAIKIGYRHIDCAADY 47 (309)
Q Consensus 23 ~~~~~~~l~~A~~~Gin~~DTA~~Y 47 (309)
.....+++++|.+.|+..+=.+++.
T Consensus 110 ~~~~ee~v~~Ai~~Gl~~i~~TDH~ 134 (335)
T PRK07945 110 GSPIEEMARTAAALGHEYCALTDHS 134 (335)
T ss_pred CCCHHHHHHHHHHCCCCEEEEeCCC
Confidence 3457899999999999987666663
No 53
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=53.53 E-value=33 Score=27.27 Aligned_cols=74 Identities=15% Similarity=0.096 Sum_probs=50.0
Q ss_pred eeEEeecCCCHH--HHHHHHHhcCCCceEEeeccCCCCCchHHHHHHHHcCCeEEEeccCCCCCCCCcccCCccCCCcHH
Q 021693 154 VRSIGISNYDIF--LTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTPLGGAVANTEWFGTVSCLDDPV 231 (309)
Q Consensus 154 ir~iGvs~~~~~--~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~ 231 (309)
+..+|+..|+.. .+..+++.+++.... ...+....+.+..+-++++.++..|.+.++. ....+.
T Consensus 17 vak~GlDgHd~gakvia~~l~d~GfeVi~----~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~h----------~~l~~~ 82 (143)
T COG2185 17 VAKLGLDGHDRGAKVIARALADAGFEVIN----LGLFQTPEEAVRAAVEEDVDVIGVSSLDGGH----------LTLVPG 82 (143)
T ss_pred EeccCccccccchHHHHHHHHhCCceEEe----cCCcCCHHHHHHHHHhcCCCEEEEEeccchH----------HHHHHH
Confidence 346788888754 788888888764321 1222334788899999999999999999883 222355
Q ss_pred HHHHHHHcCC
Q 021693 232 LKGLAEKYKR 241 (309)
Q Consensus 232 l~~ia~~~~~ 241 (309)
+.+..++.|.
T Consensus 83 lve~lre~G~ 92 (143)
T COG2185 83 LVEALREAGV 92 (143)
T ss_pred HHHHHHHhCC
Confidence 5566666554
No 54
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=53.26 E-value=32 Score=30.52 Aligned_cols=51 Identities=10% Similarity=0.116 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHhcCCCceEEeeccCCCCCchHHHHHHHHcCCeEEEeccCCCC
Q 021693 162 YDIFLTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTPLGGA 214 (309)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~G 214 (309)
|+...+.++.+..+++..++-..||+... ++.++|++.|+.+++.-|+-.-
T Consensus 201 hD~kr~~el~~~f~ip~~iViNr~~~g~s--~ie~~~~e~gi~il~~IPyd~~ 251 (284)
T COG1149 201 HDLKRALELVEHFGIPTGIVINRYNLGDS--EIEEYCEEEGIPILGEIPYDKD 251 (284)
T ss_pred hHHHHHHHHHHHhCCceEEEEecCCCCch--HHHHHHHHcCCCeeEECCcchh
Confidence 34445666677778888888888866544 8999999999999999887544
No 55
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=52.95 E-value=1.2e+02 Score=28.59 Aligned_cols=87 Identities=17% Similarity=0.293 Sum_probs=56.7
Q ss_pred chHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCCeeEEeecCC
Q 021693 83 GHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGISNY 162 (309)
Q Consensus 83 ~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~ 162 (309)
+.+.+.+|+-.+ |-+|++-+|.-- ..+.++.++++|+ ..|+-+.
T Consensus 140 d~~~~~ie~qa~----dGVDfmTiH~Gi------------------------------~~~~~~~~~~~~R--~~giVSR 183 (423)
T TIGR00190 140 DDMFRAIEKQAK----DGVDFMTIHAGV------------------------------LLEYVERLKRSGR--ITGIVSR 183 (423)
T ss_pred HHHHHHHHHHHH----hCCCEEEEccch------------------------------hHHHHHHHHhCCC--ccCeecC
Confidence 566666666665 678899999631 4568888998885 5676666
Q ss_pred CHHHHHHHHHhcCCCceEEeeccCCCCCc-hHHHHHHHHcCCeEEEeccCCCCCCC
Q 021693 163 DIFLTRDCLAYSKVKPVVNQFETHPYFQR-DSLVKFCQKHGICVTAHTPLGGAVAN 217 (309)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~ll~~~~~~gi~v~a~~pl~~G~l~ 217 (309)
.-..+...+..-+ .-||+..+ +.+++.|+++++.+- |+.|+..
T Consensus 184 GGs~~~~WM~~~~--------~ENPlye~fD~lLeI~~~yDVtlS----LGDglRP 227 (423)
T TIGR00190 184 GGAILAAWMLHHH--------KENPLYKNFDYILEIAKEYDVTLS----LGDGLRP 227 (423)
T ss_pred cHHHHHHHHHHcC--------CcCchHHHHHHHHHHHHHhCeeee----ccCCcCC
Confidence 6555444333322 23444443 689999999999874 5666533
No 56
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=52.91 E-value=60 Score=27.48 Aligned_cols=68 Identities=7% Similarity=0.088 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHH--CCCeeEEeecCCCHHHHHHHHHhcCCCceEEeeccCCCCCchHHHHHHHHcCCeEEEeccC
Q 021693 138 LETTWHAMEDLVS--MGLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTPL 211 (309)
Q Consensus 138 ~~~~~~~L~~l~~--~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl 211 (309)
++.+...++.+++ .+. -+.+-+++++.++.+++. +.++..+...+. ...++++.++++|..++++---
T Consensus 56 ~~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~-g~~~ind~~~~~---~~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 56 MERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKA-GADIINDISGFE---DDPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp HHHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHH-TSSEEEETTTTS---SSTTHHHHHHHHTSEEEEESES
T ss_pred HHHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHc-CcceEEeccccc---ccchhhhhhhcCCCEEEEEecc
Confidence 4455566666665 233 577889999999999998 666544433333 2568999999999999988765
No 57
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=52.58 E-value=1.8e+02 Score=26.39 Aligned_cols=105 Identities=12% Similarity=0.054 Sum_probs=56.7
Q ss_pred ChhhHHHHHHHHHHc-CCcEEecCCCC---CCHHHHHHHHHHHHhcCCCCCccEEEEecCCCCCcchHHHHHHHHHHhhC
Q 021693 22 DESNIRDLIINAIKI-GYRHIDCAADY---RNEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKKLQ 97 (309)
Q Consensus 22 ~~~~~~~~l~~A~~~-Gin~~DTA~~Y---gsE~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~i~~~ve~SL~~L~ 97 (309)
+.++..++++...+. ||+.+--+..- .+...+.+.++.+.+.+ ....+.+.|+.....+..+...+=+.|+..|
T Consensus 120 ~~~e~~~~i~~i~~~~~I~~VilSGGDPl~~~~~~L~~ll~~l~~i~--~v~~iri~Tr~~v~~p~rit~ell~~L~~~g 197 (321)
T TIGR03822 120 SPAELDAAFAYIADHPEIWEVILTGGDPLVLSPRRLGDIMARLAAID--HVKIVRFHTRVPVADPARVTPALIAALKTSG 197 (321)
T ss_pred CHHHHHHHHHHHHhCCCccEEEEeCCCcccCCHHHHHHHHHHHHhCC--CccEEEEeCCCcccChhhcCHHHHHHHHHcC
Confidence 345566666655544 77654322110 12344555555432222 2344677787655555555555556666666
Q ss_pred CCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCC
Q 021693 98 LDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGL 153 (309)
Q Consensus 98 ~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk 153 (309)
.. ..+.+|.... ....++++++++.|++.|.
T Consensus 198 ~~--v~i~l~~~h~-----------------------~el~~~~~~ai~~L~~~Gi 228 (321)
T TIGR03822 198 KT--VYVALHANHA-----------------------RELTAEARAACARLIDAGI 228 (321)
T ss_pred Cc--EEEEecCCCh-----------------------hhcCHHHHHHHHHHHHcCC
Confidence 32 3466775322 1113678888888888885
No 58
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=52.29 E-value=1.3e+02 Score=30.34 Aligned_cols=149 Identities=17% Similarity=0.157 Sum_probs=80.9
Q ss_pred hhhHHHHHHHHHHcCCcEEecCCCCCCHHHHHHHHHHHHhcCCCCCccEEEEecCCCCCcchHHHHHHHHHHhhCCCcee
Q 021693 23 ESNIRDLIINAIKIGYRHIDCAADYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKKLQLDYLD 102 (309)
Q Consensus 23 ~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~i~~~ve~SL~~L~~d~iD 102 (309)
.+-+.+++++|-+.|++.+ ..|.-+. -+.-=+. .-|+-|+..|...+-..++ .+++-.+--...-+|
T Consensus 42 gEIaIRvFRa~tEL~~~tv---AiYseqD-~~sMHRq-------KADEaY~iGk~l~PV~AYL--~ideii~iak~~~vd 108 (1176)
T KOG0369|consen 42 GEIAIRVFRAATELSMRTV---AIYSEQD-RLSMHRQ-------KADEAYLIGKGLPPVGAYL--AIDEIISIAKKHNVD 108 (1176)
T ss_pred CcchhHHHHHHhhhcceEE---EEEeccc-hhhhhhh-------ccccceecccCCCchhhhh--hHHHHHHHHHHcCCC
Confidence 4567899999999999987 3674221 1111122 5688899999754433222 233333333334566
Q ss_pred EEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCCeeEEeecCCCHHHH-----HHHH-HhcCC
Q 021693 103 LYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGISNYDIFLT-----RDCL-AYSKV 176 (309)
Q Consensus 103 l~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l-----~~~~-~~~~~ 176 (309)
. +| |... + +.|- ..+.+.+++--|++||=|.--...+ .+.+ -.+++
T Consensus 109 a--vH-PGYG------F------------------LSEr-sdFA~av~~AGi~fiGPspeVi~~mGDKv~AR~~Ai~agV 160 (1176)
T KOG0369|consen 109 A--VH-PGYG------F------------------LSER-SDFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIEAGV 160 (1176)
T ss_pred e--ec-CCcc------c------------------cccc-hHHHHHHHhcCceEeCCCHHHHHHhhhHHHHHHHHHHcCC
Confidence 5 45 2221 0 0011 1233444445578999775322211 1111 12233
Q ss_pred CceEEeeccCCCCCchHHHHHHHHcCCeEEEeccCCCC
Q 021693 177 KPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTPLGGA 214 (309)
Q Consensus 177 ~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~G 214 (309)
+ ++..--.+...-.+.+++|+++|.+||--..++||
T Consensus 161 p--vVPGTpgPitt~~EA~eF~k~yG~PvI~KAAyGGG 196 (1176)
T KOG0369|consen 161 P--VVPGTPGPITTVEEALEFVKEYGLPVIIKAAYGGG 196 (1176)
T ss_pred C--ccCCCCCCcccHHHHHHHHHhcCCcEEEeecccCC
Confidence 2 12222223333378899999999999999999888
No 59
>PRK13796 GTPase YqeH; Provisional
Probab=52.22 E-value=2e+02 Score=26.70 Aligned_cols=115 Identities=13% Similarity=0.073 Sum_probs=72.2
Q ss_pred cChhhHHHHHHHHHHcC---CcEEecCCCCCC-HHHHHHHHHHHHhcCCCCCccEEEEecCCCCC----cchHHHHHHHH
Q 021693 21 MDESNIRDLIINAIKIG---YRHIDCAADYRN-EAEVGEALAEAFSTGLVKREDLFITTKLWNSD----HGHVLEACKDS 92 (309)
Q Consensus 21 ~~~~~~~~~l~~A~~~G---in~~DTA~~Ygs-E~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~----~~~i~~~ve~S 92 (309)
++.++..+++...-+.- +-.+|..+.-++ ...+.+... .+.-++|.+|.--.. .+.+.+.++.-
T Consensus 54 ~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~~--------~kpviLViNK~DLl~~~~~~~~i~~~l~~~ 125 (365)
T PRK13796 54 LTDDDFLKLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFVG--------NNPVLLVGNKADLLPKSVKKNKVKNWLRQE 125 (365)
T ss_pred CCHHHHHHHHHhhcccCcEEEEEEECccCCCchhHHHHHHhC--------CCCEEEEEEchhhCCCccCHHHHHHHHHHH
Confidence 45666777777776555 556786665444 222222221 355688999973322 23455555666
Q ss_pred HHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCCeeEEeecCCCHHHH
Q 021693 93 LKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGISNYDIFLT 167 (309)
Q Consensus 93 L~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l 167 (309)
.+.+|....|++++-.-. ....+++++.+.++.+.+.+--+|.+|..-..+
T Consensus 126 ~k~~g~~~~~v~~vSAk~------------------------g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTL 176 (365)
T PRK13796 126 AKELGLRPVDVVLISAQK------------------------GHGIDELLEAIEKYREGRDVYVVGVTNVGKSTL 176 (365)
T ss_pred HHhcCCCcCcEEEEECCC------------------------CCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHH
Confidence 666776545776665321 234678888888887778899999999987644
No 60
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=52.10 E-value=1.8e+02 Score=26.85 Aligned_cols=99 Identities=14% Similarity=0.024 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCCeeEEeecCCC
Q 021693 84 HVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGISNYD 163 (309)
Q Consensus 84 ~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~ 163 (309)
.-+..+-+.|.++|+++|++-..-+|...+ . ....+++++++.+ ...++..++. .+
T Consensus 68 e~Ki~ia~~L~~~GV~~IEvGs~vspk~vP---------------q-----mad~~ev~~~i~~---~~~~~~~~l~-~n 123 (347)
T PLN02746 68 SVKVELIQRLVSSGLPVVEATSFVSPKWVP---------------Q-----LADAKDVMAAVRN---LEGARFPVLT-PN 123 (347)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCcCccccc---------------c-----cccHHHHHHHHHh---ccCCceeEEc-CC
Confidence 445667778999999999986443442210 0 1223445555543 2335555554 47
Q ss_pred HHHHHHHHHhcCCCceEEeeccCCCC--------Cc------hHHHHHHHHcCCeEEE
Q 021693 164 IFLTRDCLAYSKVKPVVNQFETHPYF--------QR------DSLVKFCQKHGICVTA 207 (309)
Q Consensus 164 ~~~l~~~~~~~~~~~~~~q~~~~~~~--------~~------~~ll~~~~~~gi~v~a 207 (309)
...++.+++.. .+...+-++.|... .+ .+++++|+++|+.+.+
T Consensus 124 ~~die~A~~~g-~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~ 180 (347)
T PLN02746 124 LKGFEAAIAAG-AKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRG 180 (347)
T ss_pred HHHHHHHHHcC-cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 77888887763 32222222222111 11 3688999999998853
No 61
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=51.72 E-value=45 Score=32.23 Aligned_cols=128 Identities=18% Similarity=0.104 Sum_probs=76.4
Q ss_pred HHHHHHHHHcCCcEEe--cCCCC---CC-------HHHHHHHHHHHHhcCCCCCccEEEEecCCCCCcch----------
Q 021693 27 RDLIINAIKIGYRHID--CAADY---RN-------EAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGH---------- 84 (309)
Q Consensus 27 ~~~l~~A~~~Gin~~D--TA~~Y---gs-------E~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~---------- 84 (309)
-+-++...+.|++-+= ||.+| |+ -+.+..+-++.+. ...+.++||++-++..+..+
T Consensus 105 ~e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g--~~L~Gk~~lTaGLGGMgGAQplA~~m~g~v 182 (546)
T PF01175_consen 105 WEHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFG--GDLAGKLFLTAGLGGMGGAQPLAATMAGGV 182 (546)
T ss_dssp HHHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHST--TS-TT-EEEEE--STTCCHHHHHHHHTT-E
T ss_pred HHHHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcC--CCCcceEEEEecccccccchHHHHHhcCce
Confidence 4456777888988763 66655 43 2344455455443 23688899999887665411
Q ss_pred ---HHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCCeeEEeecC
Q 021693 85 ---VLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGISN 161 (309)
Q Consensus 85 ---i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~ 161 (309)
+.-.-++.-+|+.+.|+|.+ ..+++++++..++.+++|+..+||+-.
T Consensus 183 ~l~vEvd~~ri~kR~~~g~ld~~------------------------------~~~ldea~~~~~ea~~~~~~~SIg~~G 232 (546)
T PF01175_consen 183 GLIVEVDPSRIEKRLEQGYLDEV------------------------------TDDLDEALARAKEARAKKEPLSIGLLG 232 (546)
T ss_dssp EEEEES-HHHHHHHHHTTSSSEE------------------------------ESSHHHHHHHHHHHHHTT--EEEEEES
T ss_pred EEEEEECHHHHHHHHhCCCeeEE------------------------------cCCHHHHHHHHHHhhccCCeeEEEEec
Confidence 11122444578888999985 234789999999999999999999999
Q ss_pred CCHHHHHHHHHhcC-CCceEEeeccC
Q 021693 162 YDIFLTRDCLAYSK-VKPVVNQFETH 186 (309)
Q Consensus 162 ~~~~~l~~~~~~~~-~~~~~~q~~~~ 186 (309)
.-++.++++++..- +++...|...+
T Consensus 233 N~ad~~~~l~~~~i~pDl~tDQTS~H 258 (546)
T PF01175_consen 233 NAADLWEELVERGIIPDLVTDQTSAH 258 (546)
T ss_dssp -HHHHHHHHHHTT---SEE---SSTT
T ss_pred cHHHHHHHHHHcCCCCCcccCCCccc
Confidence 88888888887742 34455676654
No 62
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=51.38 E-value=1.7e+02 Score=25.69 Aligned_cols=68 Identities=15% Similarity=0.145 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHCCCeeEEeecCCCHHHHHHHHHhcCCCceEEeeccCCCCCchHHHHHHHHcCCeEEEecc
Q 021693 138 LETTWHAMEDLVSMGLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTP 210 (309)
Q Consensus 138 ~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~p 210 (309)
.+.+...+..+++.-.+. +.+-+++++.++++++.. ...+|-+. ....+..+++.++++|..++.+..
T Consensus 61 ~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G--~~iINdis--g~~~~~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 61 LERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAG--ADIINDVS--GGSDDPAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred HHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhC--CCEEEeCC--CCCCChHHHHHHHHcCCCEEEECC
Confidence 334444566666653443 889999999999999884 23444333 222226799999999999999653
No 63
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=51.27 E-value=2.2e+02 Score=27.02 Aligned_cols=115 Identities=12% Similarity=0.124 Sum_probs=64.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCccEEEEecCCCC-CcchHHHHHHHHHHhhCCC-ceeEEEeecCCCCCCCCCCCCCC
Q 021693 45 ADYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNS-DHGHVLEACKDSLKKLQLD-YLDLYLVHFPVATKHTGVGTTDS 122 (309)
Q Consensus 45 ~~YgsE~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~-~~~~i~~~ve~SL~~L~~d-~iDl~~lH~p~~~~~~~~~~~~~ 122 (309)
-.||.+..+-++|.+..++. +.+-++|.|=+... -.+.+..-+++.-++.... .+.++.++.|......
T Consensus 65 ~V~Gg~~~L~~ai~~~~~~~--~p~~I~v~ttC~~~iiGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~gs~------- 135 (435)
T cd01974 65 AVFGGQNNLIDGLKNAYAVY--KPDMIAVSTTCMAEVIGDDLNAFIKNAKNKGSIPADFPVPFANTPSFVGSH------- 135 (435)
T ss_pred eEECcHHHHHHHHHHHHHhc--CCCEEEEeCCchHhhhhccHHHHHHHHHHhccCCCCCeEEEecCCCCccCH-------
Confidence 46788888999998876654 34556666654221 1255555555443443211 4789999988653110
Q ss_pred CCCcCCccccccCCcHHHHHHHHHH-HH-------HCCCeeEEe-ecCC-C-HHHHHHHHHhcCCCceE
Q 021693 123 ALDADGVLEIDTTISLETTWHAMED-LV-------SMGLVRSIG-ISNY-D-IFLTRDCLAYSKVKPVV 180 (309)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~L~~-l~-------~~Gkir~iG-vs~~-~-~~~l~~~~~~~~~~~~~ 180 (309)
....+.++++|-+ +. +.++|--|| ..+. + ...++++++..++++.+
T Consensus 136 ------------~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~~ 192 (435)
T cd01974 136 ------------ITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYTI 192 (435)
T ss_pred ------------HHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEEE
Confidence 1223344444432 22 234465665 2222 2 56888889988877543
No 64
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=51.27 E-value=1.3e+02 Score=27.10 Aligned_cols=109 Identities=11% Similarity=0.109 Sum_probs=69.8
Q ss_pred CCCeeEEeecCCCHHHHHHHHHhcCCC-ceEEeeccCCCC-----CchHHHHHHHHcCCeEEEeccCCCCCCCCcccCCc
Q 021693 151 MGLVRSIGISNYDIFLTRDCLAYSKVK-PVVNQFETHPYF-----QRDSLVKFCQKHGICVTAHTPLGGAVANTEWFGTV 224 (309)
Q Consensus 151 ~Gkir~iGvs~~~~~~l~~~~~~~~~~-~~~~q~~~~~~~-----~~~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~~ 224 (309)
..++..+-=++.+.....++.+...-. +...-..+|-.| ++..+.+++++.+.-++.-++-
T Consensus 155 ~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~------------- 221 (298)
T PRK01045 155 PDKLALVTQTTLSVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKN------------- 221 (298)
T ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCC-------------
Confidence 356666767777777666665544211 111111122222 2367888899888777654332
Q ss_pred cCCCcHHHHHHHHHcCC------CHHHHHHHHHhcCC-cEEecCCCChhHHHHhhc
Q 021693 225 SCLDDPVLKGLAEKYKR------TVAQTVLRWGIQRN-TAVIPKTSKLERLEENFK 273 (309)
Q Consensus 225 ~~~~~~~l~~ia~~~~~------s~aq~al~~~l~~~-~~vi~g~~~~~~l~~n~~ 273 (309)
.-.-..|.++|++.+. +..++-..|+.... +.+..|+|+|+.+-+.+-
T Consensus 222 -SsNT~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV~ 276 (298)
T PRK01045 222 -SSNSNRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEVI 276 (298)
T ss_pred -CccHHHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHHH
Confidence 2233688999999873 77999999997655 678899999997766543
No 65
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=49.70 E-value=68 Score=31.41 Aligned_cols=76 Identities=16% Similarity=0.072 Sum_probs=52.8
Q ss_pred CCcHHHHHHHHHHHHHCCCeeEEeecCCCHHHHHHHHHhcCCCceEEeeccCCCCCchHHHHHHHHcCCeEEEecc
Q 021693 135 TISLETTWHAMEDLVSMGLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTP 210 (309)
Q Consensus 135 ~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~p 210 (309)
.....++.+.+.+.++..+|+++|+-.+....+...++..+++++.+.-.+.-+.....-++..-..|.-+..-.|
T Consensus 409 ~id~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv~i~Q~~~~l~~~~k~~e~~~~~g~i~~~dnp 484 (546)
T COG4626 409 LIDYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVVGIPQGFKKLSGAIKTIERKLAEGVLVHGDNP 484 (546)
T ss_pred ccCHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCceeeccchhhhhCchhHHHHHHHhcCcEEECCCc
Confidence 4557888999999999999999999999999999989988887665544444333333344444455554444443
No 66
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=49.66 E-value=1.8e+02 Score=25.57 Aligned_cols=107 Identities=17% Similarity=0.170 Sum_probs=54.4
Q ss_pred chHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCCeeEEeecCC
Q 021693 83 GHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGISNY 162 (309)
Q Consensus 83 ~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~ 162 (309)
..-+..+-+.|.++|+|+|++-+........ .+.. .....+.++.+.+..+ +..+..+++..
T Consensus 19 ~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~-------------~~~~----~~~~~~~~~~i~~~~~-~~~~~~~~~~~ 80 (266)
T cd07944 19 DEFVKAIYRALAAAGIDYVEIGYRSSPEKEF-------------KGKS----AFCDDEFLRRLLGDSK-GNTKIAVMVDY 80 (266)
T ss_pred HHHHHHHHHHHHHCCCCEEEeecCCCCcccc-------------CCCc----cCCCHHHHHHHHhhhc-cCCEEEEEECC
Confidence 3455666777999999999997654321100 0111 1112445555555543 24555555544
Q ss_pred C---HHHHHHHHHhcCCCceEEeeccCCCCCchHHHHHHHHcCCeEEEe
Q 021693 163 D---IFLTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAH 208 (309)
Q Consensus 163 ~---~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~ 208 (309)
. ...+..+.+ .+++..-+.+..+.+..-...+++++++|+.+...
T Consensus 81 ~~~~~~~l~~a~~-~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 81 GNDDIDLLEPASG-SVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred CCCCHHHHHHHhc-CCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEE
Confidence 3 233333322 22332223333332222367888888888876544
No 67
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=49.23 E-value=1.6e+02 Score=26.41 Aligned_cols=112 Identities=13% Similarity=0.069 Sum_probs=70.5
Q ss_pred HHHHHCCCeeEEeecCCCHHHHHHHHHhcCCCceEEeeccCCCC-----CchHHHHHHHHcCCeEEEeccCCCCCCCCcc
Q 021693 146 EDLVSMGLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYF-----QRDSLVKFCQKHGICVTAHTPLGGAVANTEW 220 (309)
Q Consensus 146 ~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~-----~~~~ll~~~~~~gi~v~a~~pl~~G~l~~~~ 220 (309)
+.|.-..++..+-=++.+.+....+.+...-.+.-..+ +|-.| ++..+.+++++.++-++.-+.-
T Consensus 151 ~~l~~~~kv~~vsQTT~~~~~~~~iv~~l~~~~~~~~v-~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~~--------- 220 (281)
T PRK12360 151 ENIPFLDKACVVAQTTIIPELWEDILNVIKLKSKELVF-FNTICSATKKRQESAKELSKEVDVMIVIGGKH--------- 220 (281)
T ss_pred hhCccccCEEEEECCCCcHHHHHHHHHHHHHhCccccc-CCCcchhhhhHHHHHHHHHHhCCEEEEecCCC---------
Confidence 33333355666666677777666655543211111111 23222 2367888898888777654332
Q ss_pred cCCccCCCcHHHHHHHHHcCC------CHHHHHHHHHhcCC-cEEecCCCChhHHHHhh
Q 021693 221 FGTVSCLDDPVLKGLAEKYKR------TVAQTVLRWGIQRN-TAVIPKTSKLERLEENF 272 (309)
Q Consensus 221 ~~~~~~~~~~~l~~ia~~~~~------s~aq~al~~~l~~~-~~vi~g~~~~~~l~~n~ 272 (309)
.-.-..|.++|++.+. ++.++-..|+.... +.+..|+|+|+.+-+.+
T Consensus 221 -----SsNT~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~~VGitaGASTP~~li~eV 274 (281)
T PRK12360 221 -----SSNTQKLVKICEKNCPNTFHIETADELDLEMLKDYKIIGITAGASTPDWIIEEV 274 (281)
T ss_pred -----CccHHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEccCCCCHHHHHHH
Confidence 2233688999999874 67888889998765 67889999999886654
No 68
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=48.61 E-value=1.8e+02 Score=25.04 Aligned_cols=171 Identities=13% Similarity=0.140 Sum_probs=86.1
Q ss_pred hhhHHHHHHHHHHcCCcEEecCCCCCCHHHHHHHHHHHHhcCCCCCccEEEEecCCCCCcchHHHHHHHHHHhhCCCcee
Q 021693 23 ESNIRDLIINAIKIGYRHIDCAADYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKKLQLDYLD 102 (309)
Q Consensus 23 ~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~i~~~ve~SL~~L~~d~iD 102 (309)
.....+++..|.+.|+..+=.+++...........+. +.+=+++...-+.....+.+ +.-+++.. +.+|
T Consensus 15 ~~~~~e~i~~A~~~Gl~~i~itdH~~~~~~~~~~~~~------~~~i~Il~GiEi~~~~~~~~----~~~~~~~~-~~~d 83 (237)
T PRK00912 15 YDTVLRLISEASHLGYSGIALSNHSDKYPESKPELED------LLGFEIFRGVEIVASNPSKL----RGLVGKFR-KKVD 83 (237)
T ss_pred cchHHHHHHHHHHCCCCEEEEecCcccccchhHHHHH------hcCCcEEeeEEEecCCHHHH----HHHHHhcc-Cccc
Confidence 4467899999999999987777664321000111111 01112222222222222333 33333321 3578
Q ss_pred EEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCCeeEEeecCC-------CHHHHHHHHHhcC
Q 021693 103 LYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGISNY-------DIFLTRDCLAYSK 175 (309)
Q Consensus 103 l~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~-------~~~~l~~~~~~~~ 175 (309)
++.+| |.. + ...+...+.+.|.-||--.. ....++.+.+. +
T Consensus 84 ~v~v~-~~~---------------------------~---~~~~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~-g 131 (237)
T PRK00912 84 VLAVH-GGD---------------------------E---KVNRAACENPRVDILSHPYTKRKDSGINHVLAKEAARN-N 131 (237)
T ss_pred EEEEe-CCC---------------------------H---HHHHHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHC-C
Confidence 88888 211 1 12234667788777775432 11222222222 2
Q ss_pred CCceEEeeccCCCCC------------chHHHHHHHHcCCeEEEeccCCCCCCCCcccCCccCCCcHHHHHHHHHcCCCH
Q 021693 176 VKPVVNQFETHPYFQ------------RDSLVKFCQKHGICVTAHTPLGGAVANTEWFGTVSCLDDPVLKGLAEKYKRTV 243 (309)
Q Consensus 176 ~~~~~~q~~~~~~~~------------~~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~l~~ia~~~~~s~ 243 (309)
..+.++++++.. ...++..|++.|+.++..|=-.. ...+-.......+++..|.+.
T Consensus 132 ---v~lEIn~s~~~~~~~~~r~~~~~~~~~~~~~~~~~g~piiisSdAh~---------~~~l~~~~~~~~l~~~~Gl~~ 199 (237)
T PRK00912 132 ---VAIEFNLRDILKSRGGRRARTLSNFRDNLALARKYDFPLVLTSGAMS---------CYDLRSPREMIALAELFGMEE 199 (237)
T ss_pred ---eEEEEEchHhhhhcccHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCc---------ccccCCHHHHHHHHHHcCCCH
Confidence 344555554311 14688999999988765441111 112223356778888888876
Q ss_pred HHHHH
Q 021693 244 AQTVL 248 (309)
Q Consensus 244 aq~al 248 (309)
.++--
T Consensus 200 ~~~~~ 204 (237)
T PRK00912 200 DEALK 204 (237)
T ss_pred HHHHH
Confidence 55443
No 69
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=48.08 E-value=43 Score=27.42 Aligned_cols=69 Identities=16% Similarity=0.143 Sum_probs=39.9
Q ss_pred CcHHHHHHHHHHHHHCC-CeeEEeecCCC--HHHHHHHHHhcCCCceEEeeccCCCCCchHHHHHHHHcCCeEEEec
Q 021693 136 ISLETTWHAMEDLVSMG-LVRSIGISNYD--IFLTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHT 209 (309)
Q Consensus 136 ~~~~~~~~~L~~l~~~G-kir~iGvs~~~--~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~ 209 (309)
....+++.+|.+++..| +|..+|..+.. ...+.+++ ++ .+.++.|+....-...+..+++.|+.++.-+
T Consensus 61 ~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll---~~--~i~~~~~~~~~e~~~~i~~~~~~G~~viVGg 132 (176)
T PF06506_consen 61 ISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELL---GV--DIKIYPYDSEEEIEAAIKQAKAEGVDVIVGG 132 (176)
T ss_dssp --HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHH---T---EEEEEEESSHHHHHHHHHHHHHTT--EEEES
T ss_pred CCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHh---CC--ceEEEEECCHHHHHHHHHHHHHcCCcEEECC
Confidence 34567899999988766 56666666654 23444443 33 4555555532222678888999998887543
No 70
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=47.79 E-value=1.4e+02 Score=26.27 Aligned_cols=83 Identities=17% Similarity=0.091 Sum_probs=55.6
Q ss_pred ccceeccccChhh-HHHHHHHHHHcCCcEEecCCCCCC-----H--HHHHHHHHHHHhcCCCCCccEEEEecC--CCCCc
Q 021693 13 IIGLGVWRMDESN-IRDLIINAIKIGYRHIDCAADYRN-----E--AEVGEALAEAFSTGLVKREDLFITTKL--WNSDH 82 (309)
Q Consensus 13 ~lg~G~~~~~~~~-~~~~l~~A~~~Gin~~DTA~~Ygs-----E--~~lG~~l~~~~~~~~~~R~~~~i~tK~--~~~~~ 82 (309)
.+.+=+.-+++++ ..++.+.|.++|..|+=|+..|+. | +++-+.+++ .+ ...+ +--|. +..+.
T Consensus 135 KVIlEt~~L~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~---~~--~~~~--vgIKAsGGIrt~ 207 (257)
T PRK05283 135 KVIIETGELKDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRD---MG--VAKT--VGFKPAGGVRTA 207 (257)
T ss_pred EEEEeccccCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHh---cc--cCCC--eeEEccCCCCCH
Confidence 3444444567774 888999999999999999999962 2 333333332 11 1222 33343 45566
Q ss_pred chHHHHHHHHHHhhCCCcee
Q 021693 83 GHVLEACKDSLKKLQLDYLD 102 (309)
Q Consensus 83 ~~i~~~ve~SL~~L~~d~iD 102 (309)
+...+-++.--+.||.++++
T Consensus 208 ~~A~~~i~ag~~~lg~~~~~ 227 (257)
T PRK05283 208 EDAAQYLALADEILGADWAD 227 (257)
T ss_pred HHHHHHHHHHHHHhChhhcC
Confidence 88888899999999998876
No 71
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=47.61 E-value=1.6e+02 Score=27.81 Aligned_cols=88 Identities=18% Similarity=0.335 Sum_probs=57.1
Q ss_pred cchHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCCeeEEeecC
Q 021693 82 HGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGISN 161 (309)
Q Consensus 82 ~~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~ 161 (309)
.+.+.+.+|+-.+ |-+|++-+|.-- ..+.++.++++|+ ..|+-+
T Consensus 142 ~d~~~~~ie~qa~----~GVDfmTiHcGi------------------------------~~~~~~~~~~~~R--~~giVS 185 (431)
T PRK13352 142 EDDLFDVIEKQAK----DGVDFMTIHCGV------------------------------TRETLERLKKSGR--IMGIVS 185 (431)
T ss_pred HHHHHHHHHHHHH----hCCCEEEEccch------------------------------hHHHHHHHHhcCC--ccCeec
Confidence 3566666666665 678899999632 3468888888885 556666
Q ss_pred CCHHHHHHHHHhcCCCceEEeeccCCCCCc-hHHHHHHHHcCCeEEEeccCCCCCCC
Q 021693 162 YDIFLTRDCLAYSKVKPVVNQFETHPYFQR-DSLVKFCQKHGICVTAHTPLGGAVAN 217 (309)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~ll~~~~~~gi~v~a~~pl~~G~l~ 217 (309)
..-..+...+..-+ .-||+... +.+++.|+++++.+- |+.|+..
T Consensus 186 RGGs~~~~WM~~n~--------~ENPlye~fD~lLeI~~~yDVtlS----LGDglRP 230 (431)
T PRK13352 186 RGGSFLAAWMLHNN--------KENPLYEHFDYLLEILKEYDVTLS----LGDGLRP 230 (431)
T ss_pred CCHHHHHHHHHHcC--------CcCchHHHHHHHHHHHHHhCeeee----ccCCcCC
Confidence 66554444333221 23444443 789999999999874 6666543
No 72
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=47.09 E-value=2.3e+02 Score=25.97 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=29.8
Q ss_pred eecCCCCcccccceeccccChhhHHHHHHHHHHcCCcEEecC
Q 021693 3 ITLNNGFKMPIIGLGVWRMDESNIRDLIINAIKIGYRHIDCA 44 (309)
Q Consensus 3 ~~l~tg~~vs~lg~G~~~~~~~~~~~~l~~A~~~Gin~~DTA 44 (309)
++|+.|.+... ++++.++..+++...-+.||..|+..
T Consensus 8 ~TLRDG~q~~~-----~~f~~~~~~~ia~~Ld~aGV~~IEvg 44 (333)
T TIGR03217 8 VTLRDGMHAIR-----HQFTIEQVRAIAAALDEAGVDAIEVT 44 (333)
T ss_pred CCCCCCCcCCC-----CcCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 45788877543 55678889999999999999999994
No 73
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=46.23 E-value=1.7e+02 Score=24.92 Aligned_cols=71 Identities=13% Similarity=0.039 Sum_probs=47.7
Q ss_pred HHHHHHHHHCCCee-EEeecCCCHHHHHHHHHhcCCCceEEeeccCCCCC---chHHHHHHHHcCCeEEEeccCCCC
Q 021693 142 WHAMEDLVSMGLVR-SIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQ---RDSLVKFCQKHGICVTAHTPLGGA 214 (309)
Q Consensus 142 ~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~---~~~ll~~~~~~gi~v~a~~pl~~G 214 (309)
++.+.+|++...+. ..+=|.++...+..+++... ..++|+..+..-. -..+..+|+++|+.++.++.+..+
T Consensus 134 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~--~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~~s~ 208 (229)
T cd00308 134 LEGYAALRRRTGIPIAADESVTTVDDALEALELGA--VDILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLESS 208 (229)
T ss_pred HHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCC--CCEEecCccccCCHHHHHHHHHHHHHcCCEEeecCCCCCH
Confidence 45677777776655 33455566777766666543 3667776654322 257889999999999988776555
No 74
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=44.55 E-value=1.7e+02 Score=23.68 Aligned_cols=77 Identities=12% Similarity=0.054 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHCCCeeEEeecCCCHHHHHHHHHhcCCCceEEeeccCCCCC-------chHHHHHHHHcCCeEEEecc
Q 021693 138 LETTWHAMEDLVSMGLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQ-------RDSLVKFCQKHGICVTAHTP 210 (309)
Q Consensus 138 ~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~-------~~~ll~~~~~~gi~v~a~~p 210 (309)
-+++++.--+--++.-|++|=|++-+-....++++...-...++-+.++.-.. +.++-+..+++|..|..-|-
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~~sH 91 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLTQSH 91 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHHHHcCceeeeehh
Confidence 55677666666677889999998887777777777654332333333332221 26788999999999887665
Q ss_pred CCCC
Q 021693 211 LGGA 214 (309)
Q Consensus 211 l~~G 214 (309)
...|
T Consensus 92 alSg 95 (186)
T COG1751 92 ALSG 95 (186)
T ss_pred hhhc
Confidence 5444
No 75
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=44.51 E-value=2.1e+02 Score=24.87 Aligned_cols=71 Identities=10% Similarity=-0.018 Sum_probs=48.1
Q ss_pred HHHHHHHHHCCCee-EEeecCCCHHHHHHHHHhcCCCceEEeeccCCCCC---chHHHHHHHHcCCeEEEeccCCCC
Q 021693 142 WHAMEDLVSMGLVR-SIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQ---RDSLVKFCQKHGICVTAHTPLGGA 214 (309)
Q Consensus 142 ~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~---~~~ll~~~~~~gi~v~a~~pl~~G 214 (309)
++.+.++++.-.+. ..|=+-++...+..+++... ++++|+.....-. -..+...|+++|+.++..+.+.++
T Consensus 169 ~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~--~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s~ 243 (265)
T cd03315 169 LEGRAALARATDTPIMADESAFTPHDAFRELALGA--ADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIESG 243 (265)
T ss_pred HHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCC--CCEEEEecccccCHHHHHHHHHHHHHcCCcEEecCccchH
Confidence 45667777665554 44445567788888777654 3567777664322 267889999999999888766554
No 76
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=43.60 E-value=43 Score=31.84 Aligned_cols=90 Identities=20% Similarity=0.215 Sum_probs=62.2
Q ss_pred CCccEEEEecCCCCCcc-----------hHHHHHHHH--HHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccc
Q 021693 67 KREDLFITTKLWNSDHG-----------HVLEACKDS--LKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEID 133 (309)
Q Consensus 67 ~R~~~~i~tK~~~~~~~-----------~i~~~ve~S--L~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~ 133 (309)
-+.++++++-++..... .|.-.+++| -+||.+.|+|..
T Consensus 165 L~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI~~Rl~t~y~d~~----------------------------- 215 (561)
T COG2987 165 LKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRIDKRLRTGYLDEI----------------------------- 215 (561)
T ss_pred ccceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHHHHHHhcchhhhh-----------------------------
Confidence 57788888887554331 111122222 378889999873
Q ss_pred cCCcHHHHHHHHHHHHHCCCeeEEeecCCCHHHHHHHHHhc-CCCceEEeeccC
Q 021693 134 TTISLETTWHAMEDLVSMGLVRSIGISNYDIFLTRDCLAYS-KVKPVVNQFETH 186 (309)
Q Consensus 134 ~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~-~~~~~~~q~~~~ 186 (309)
...++|+++..++..++|+-.+||+-..-++.+.++++.. .++.+..|.+.+
T Consensus 216 -a~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~vtDQTsaH 268 (561)
T COG2987 216 -AETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLVTDQTSAH 268 (561)
T ss_pred -cCCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCceeccccccc
Confidence 3347889999999999999999999998888999988875 233334454433
No 77
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=43.31 E-value=2.6e+02 Score=25.42 Aligned_cols=106 Identities=15% Similarity=0.122 Sum_probs=58.7
Q ss_pred cChhhHHHHHHHHHHcCCcEEecCCCCCCHHH----HHHHHHHHHhcCCCCCccEEEEecCCCCCcchHHHHHHHHHHhh
Q 021693 21 MDESNIRDLIINAIKIGYRHIDCAADYRNEAE----VGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKKL 96 (309)
Q Consensus 21 ~~~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~----lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~i~~~ve~SL~~L 96 (309)
++.++..++++.+.+.|+..|--. |-|.. +-+.++.+.+.+ ...++.|+|-. ..+. ..-+.|+..
T Consensus 45 ls~eei~~li~~~~~~Gv~~I~~t---GGEPllr~dl~~li~~i~~~~--~l~~i~itTNG-----~ll~-~~~~~L~~a 113 (329)
T PRK13361 45 LSLEELAWLAQAFTELGVRKIRLT---GGEPLVRRGCDQLVARLGKLP--GLEELSLTTNG-----SRLA-RFAAELADA 113 (329)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE---CcCCCccccHHHHHHHHHhCC--CCceEEEEeCh-----hHHH-HHHHHHHHc
Confidence 567788899999999999887654 32222 334443321122 12256666642 1222 244556677
Q ss_pred CCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCC
Q 021693 97 QLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGL 153 (309)
Q Consensus 97 ~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk 153 (309)
|++++-+ -|+..+..... . . .....++.+++.++.+++.|.
T Consensus 114 Gl~~v~I-SlDs~~~e~~~---------~---i---~~~g~~~~vl~~i~~~~~~Gi 154 (329)
T PRK13361 114 GLKRLNI-SLDTLRPELFA---------A---L---TRNGRLERVIAGIDAAKAAGF 154 (329)
T ss_pred CCCeEEE-EeccCCHHHhh---------h---h---cCCCCHHHHHHHHHHHHHcCC
Confidence 8776653 45544321100 0 0 002347788999999888874
No 78
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=43.20 E-value=37 Score=25.80 Aligned_cols=28 Identities=25% Similarity=0.495 Sum_probs=25.1
Q ss_pred cChhhHHHHHHHHHHcCCcEEecCCCCC
Q 021693 21 MDESNIRDLIINAIKIGYRHIDCAADYR 48 (309)
Q Consensus 21 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg 48 (309)
++.+.+.+....+++.|++.||.+..|.
T Consensus 74 ~~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 74 LPHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred CchhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 5677889999999999999999999985
No 79
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=43.16 E-value=2.4e+02 Score=27.50 Aligned_cols=114 Identities=10% Similarity=0.038 Sum_probs=60.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCccEEEEecCCCCCcchHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCC
Q 021693 46 DYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALD 125 (309)
Q Consensus 46 ~YgsE~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~ 125 (309)
.+|+++.+-++|.+..++. +.+-++|.|=+. .+-+-..++...++++.+.++++.++.|......
T Consensus 66 v~G~~~~L~~aI~~~~~~~--~P~~I~V~sTC~---selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~---------- 130 (511)
T TIGR01278 66 ARGSQTRLVDTVRRVDDRF--KPDLIVVTPSCT---SSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKE---------- 130 (511)
T ss_pred ecchHHHHHHHHHHHHHhc--CCCEEEEeCCCh---HHHhccCHHHHHHHhccCCCcEEEecCCCcccch----------
Confidence 3678888888888866544 334455555331 1222233333344445445889999988763110
Q ss_pred cCCccccccCCcHHHHHHHHHHH-------HHCCCeeEEeecCC------CHHHHHHHHHhcCCCce
Q 021693 126 ADGVLEIDTTISLETTWHAMEDL-------VSMGLVRSIGISNY------DIFLTRDCLAYSKVKPV 179 (309)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~L~~l-------~~~Gkir~iGvs~~------~~~~l~~~~~~~~~~~~ 179 (309)
.......+..+++.+..- .+.++|--||.++. +...++++++..++.+.
T Consensus 131 -----~~g~~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn 192 (511)
T TIGR01278 131 -----NQAADRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVN 192 (511)
T ss_pred -----hHHHHHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEE
Confidence 000011122222222110 13456888998763 44578888888877543
No 80
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=42.96 E-value=3.1e+02 Score=26.32 Aligned_cols=114 Identities=11% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCceeEE---------EeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHC-CCee
Q 021693 86 LEACKDSLKKLQLDYLDLY---------LVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSM-GLVR 155 (309)
Q Consensus 86 ~~~ve~SL~~L~~d~iDl~---------~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-Gkir 155 (309)
...+-+.|.++|++.|.+. -+.+++ -|+.++.+++. ..++
T Consensus 28 kl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~------------------------------p~e~l~~l~~~~~~~~ 77 (448)
T PRK12331 28 MLPILEKLDNAGYHSLEMWGGATFDACLRFLNED------------------------------PWERLRKIRKAVKKTK 77 (448)
T ss_pred HHHHHHHHHHcCCCEEEecCCccchhhhccCCCC------------------------------HHHHHHHHHHhCCCCE
Q ss_pred E---------EeecCCCHHHHHHHHHhc---CCCceEEeeccCCCCCchHHHHHHHHcCCeEEEeccCCCCCCCCcccCC
Q 021693 156 S---------IGISNYDIFLTRDCLAYS---KVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTPLGGAVANTEWFGT 223 (309)
Q Consensus 156 ~---------iGvs~~~~~~l~~~~~~~---~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~ 223 (309)
. +|.++++.+.+++.++.+ +++..-+-...|....-...+++++++|+.+.+.-....+
T Consensus 78 l~~l~r~~N~~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~--------- 148 (448)
T PRK12331 78 LQMLLRGQNLLGYRNYADDVVESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTS--------- 148 (448)
T ss_pred EEEEeccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecC---------
Q ss_pred ccCCCcHHHHHHHHHc
Q 021693 224 VSCLDDPVLKGLAEKY 239 (309)
Q Consensus 224 ~~~~~~~~l~~ia~~~ 239 (309)
+....+.+.+++++.
T Consensus 149 -p~~~~~~~~~~a~~l 163 (448)
T PRK12331 149 -PVHTIDYFVKLAKEM 163 (448)
T ss_pred -CCCCHHHHHHHHHHH
No 81
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=42.59 E-value=3e+02 Score=26.05 Aligned_cols=111 Identities=14% Similarity=0.040 Sum_probs=65.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCccEEEEecCCCC-CcchHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCC
Q 021693 46 DYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNS-DHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSAL 124 (309)
Q Consensus 46 ~YgsE~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~-~~~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~ 124 (309)
.||.|..+-++|.+..++. +.+-++|.|=+... -.+.+..-+++. ++++ ++++.+|.|......
T Consensus 67 V~Gg~~kL~~~I~~~~~~~--~p~~I~V~ttC~~~~IGdDi~~v~~~~-~~~~---~~vi~v~t~gf~g~~--------- 131 (427)
T cd01971 67 VFGGEDRLRELIKSTLSII--DADLFVVLTGCIAEIIGDDVGAVVSEF-QEGG---APIVYLETGGFKGNN--------- 131 (427)
T ss_pred EeCCHHHHHHHHHHHHHhC--CCCEEEEEcCCcHHHhhcCHHHHHHHh-hhcC---CCEEEEECCCcCccc---------
Confidence 5788888888888876554 44556666643221 125555555554 4443 688999988763210
Q ss_pred CcCCccccccCCcHHHHHHHHHH-HH------HCCCeeEEeecC-------CCHHHHHHHHHhcCCCceEE
Q 021693 125 DADGVLEIDTTISLETTWHAMED-LV------SMGLVRSIGISN-------YDIFLTRDCLAYSKVKPVVN 181 (309)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~L~~-l~------~~Gkir~iGvs~-------~~~~~l~~~~~~~~~~~~~~ 181 (309)
....+.++++|-+ +. +.+.|--||..+ .+...+.++++..++++..+
T Consensus 132 ----------~~G~~~a~~al~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~ 192 (427)
T cd01971 132 ----------YAGHEIVLKAIIDQYVGQSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNIL 192 (427)
T ss_pred ----------ccHHHHHHHHHHHHhccCCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEE
Confidence 1223344444443 22 235688888642 24568889999888765444
No 82
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=42.20 E-value=2.7e+02 Score=25.31 Aligned_cols=76 Identities=13% Similarity=0.031 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHCCCeeEEeecC---------CCHHHHHHHHHhcCCCceEEeeccCCC---CC-chHHHHHHHHcCCe
Q 021693 138 LETTWHAMEDLVSMGLVRSIGISN---------YDIFLTRDCLAYSKVKPVVNQFETHPY---FQ-RDSLVKFCQKHGIC 204 (309)
Q Consensus 138 ~~~~~~~L~~l~~~Gkir~iGvs~---------~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~-~~~ll~~~~~~gi~ 204 (309)
...+.+.++.+++-|.+..+.+.+ .+.+.++.+.+ .+.. ..+.+..+.. .. -...++.+++.||.
T Consensus 152 ~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~-~g~~-v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~ 229 (321)
T TIGR03822 152 PRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKT-SGKT-VYVALHANHARELTAEARAACARLIDAGIP 229 (321)
T ss_pred HHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHH-cCCc-EEEEecCCChhhcCHHHHHHHHHHHHcCCE
Confidence 456777788888888776555544 23333443333 3332 3333333311 11 14577889999999
Q ss_pred EEEeccCCCCC
Q 021693 205 VTAHTPLGGAV 215 (309)
Q Consensus 205 v~a~~pl~~G~ 215 (309)
+...+++..|+
T Consensus 230 v~~q~vLl~gv 240 (321)
T TIGR03822 230 MVSQSVLLRGV 240 (321)
T ss_pred EEEEeeEeCCC
Confidence 99999998884
No 83
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=41.90 E-value=1.4e+02 Score=26.66 Aligned_cols=113 Identities=9% Similarity=0.039 Sum_probs=67.1
Q ss_pred HHHHHH--CCCeeEEeecCCCHHHHHHHHHhcC--CCceEEeeccCCCCC-----chHHHHHHHHcCCeEEEeccCCCCC
Q 021693 145 MEDLVS--MGLVRSIGISNYDIFLTRDCLAYSK--VKPVVNQFETHPYFQ-----RDSLVKFCQKHGICVTAHTPLGGAV 215 (309)
Q Consensus 145 L~~l~~--~Gkir~iGvs~~~~~~l~~~~~~~~--~~~~~~q~~~~~~~~-----~~~ll~~~~~~gi~v~a~~pl~~G~ 215 (309)
++.+.. .+++..+-=++++.....++.+... ++ ......+|-.|. +..+.+++++-++-++.-++-
T Consensus 146 ~~~l~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~-~~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~---- 220 (281)
T PF02401_consen 146 VEKLPISDPKKVAVVSQTTQSVEKFEEIVEALKKRFP-ELEGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKN---- 220 (281)
T ss_dssp HHHGGGSSTTCEEEEE-TTS-HHHHHHHHHHHHHHST-CEE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT----
T ss_pred hcccCCCCCCeEEEEEeecccHHHHHHHHHHHHHhCc-cccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCC----
Confidence 344443 3488888888888887666655442 22 221122333333 367888888878666543322
Q ss_pred CCCcccCCccCCCcHHHHHHHHHcCC------CHHHHHHHHHhcCC-cEEecCCCChhHHHHhh
Q 021693 216 ANTEWFGTVSCLDDPVLKGLAEKYKR------TVAQTVLRWGIQRN-TAVIPKTSKLERLEENF 272 (309)
Q Consensus 216 l~~~~~~~~~~~~~~~l~~ia~~~~~------s~aq~al~~~l~~~-~~vi~g~~~~~~l~~n~ 272 (309)
.-.-..|.++|++++. ++.++...|+-... +.+..|+|+|+.+-+.+
T Consensus 221 ----------SsNT~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eV 274 (281)
T PF02401_consen 221 ----------SSNTRKLAEIAKEHGKPTYHIETADELDPEWLKGVKKVGITAGASTPDWIIEEV 274 (281)
T ss_dssp -----------HHHHHHHHHHHHCTTCEEEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHH
T ss_pred ----------CccHHHHHHHHHHhCCCEEEeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHH
Confidence 1223689999999874 77899999988776 68889999999887765
No 84
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=41.64 E-value=2.8e+02 Score=25.34 Aligned_cols=149 Identities=16% Similarity=0.161 Sum_probs=83.8
Q ss_pred ChhhHHHHHHHHHHcCCcEEecCCCCCC-----HHHHH---HHHHHHHhcCCCCCccEEEEecCCCCCcchHHHHHHHHH
Q 021693 22 DESNIRDLIINAIKIGYRHIDCAADYRN-----EAEVG---EALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSL 93 (309)
Q Consensus 22 ~~~~~~~~l~~A~~~Gin~~DTA~~Ygs-----E~~lG---~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~i~~~ve~SL 93 (309)
+.++..+....+.+.|++.|-.--..+. -+..- +++++. -.+++.|.......- .. +...+-+
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~------~g~~~~l~vDaN~~~--~~-~~a~~~~ 209 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREA------VGPDVDLMVDANGRW--DL-AEAIRLA 209 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHh------hCCCCEEEEECCCCC--CH-HHHHHHH
Confidence 4566777788888999998865322221 11111 233331 123455555542111 11 2222333
Q ss_pred HhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCCee-EEeecCCCHHHHHHHHH
Q 021693 94 KKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVR-SIGISNYDIFLTRDCLA 172 (309)
Q Consensus 94 ~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~ 172 (309)
++|. ..++.+++.|-.. +.++.+.+|++.-.+. ..|=|.+++..+.++++
T Consensus 210 ~~l~--~~~i~~iEqP~~~---------------------------~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~ 260 (357)
T cd03316 210 RALE--EYDLFWFEEPVPP---------------------------DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLE 260 (357)
T ss_pred HHhC--ccCCCeEcCCCCc---------------------------cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHH
Confidence 4442 2355566655331 1355677787775555 44455678888888887
Q ss_pred hcCCCceEEeeccCCCC---CchHHHHHHHHcCCeEEEecc
Q 021693 173 YSKVKPVVNQFETHPYF---QRDSLVKFCQKHGICVTAHTP 210 (309)
Q Consensus 173 ~~~~~~~~~q~~~~~~~---~~~~ll~~~~~~gi~v~a~~p 210 (309)
... .+++|+.....- +-..+...|+++|+.++..+.
T Consensus 261 ~~~--~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 261 AGA--VDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred hCC--CCEEecCccccCCHHHHHHHHHHHHHcCCeEeccCC
Confidence 654 366777655432 226789999999999877663
No 85
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=41.58 E-value=1.7e+02 Score=26.21 Aligned_cols=214 Identities=10% Similarity=0.048 Sum_probs=107.3
Q ss_pred hhhHHHHHHHHHHcCCcEEecCCCCC------CHHHHHHHHHHHHhc---------CCCCCccEEEEecCCCCC------
Q 021693 23 ESNIRDLIINAIKIGYRHIDCAADYR------NEAEVGEALAEAFST---------GLVKREDLFITTKLWNSD------ 81 (309)
Q Consensus 23 ~~~~~~~l~~A~~~Gin~~DTA~~Yg------sE~~lG~~l~~~~~~---------~~~~R~~~~i~tK~~~~~------ 81 (309)
++..+++-...+++|-+.++|+ .|- +|++-.+-++++.++ ..+-++...|+.=+++..
T Consensus 42 peiv~~vh~df~~aGa~ii~T~-TYqa~~~~~~e~~~~~~~~~l~~~sv~la~~ard~~g~~~~~iagsiGP~ga~~a~E 120 (300)
T COG2040 42 PEIVRNVHADFLRAGADIITTA-TYQATPEGFAERVSEDEAKQLIRRSVELARAARDAYGEENQNIAGSLGPYGAALADE 120 (300)
T ss_pred HHHHHHHHHHHHHhcCcEEeeh-hhhcCHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccccccceeccchhhhcChh
Confidence 4455667777789999999987 553 122111111211100 001122233333332211
Q ss_pred --------cchHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCC
Q 021693 82 --------HGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGL 153 (309)
Q Consensus 82 --------~~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk 153 (309)
.+.+.+-...-++.|.-.-+|++.+..... ....+.+.+.+++. +|
T Consensus 121 y~g~Y~~~~d~~~~fh~~rie~l~~ag~Dlla~ETip~-----------------------i~Ea~Aiv~l~~~~---s~ 174 (300)
T COG2040 121 YRGDYGASQDALYKFHRPRIEALNEAGADLLACETLPN-----------------------ITEAEAIVQLVQEF---SK 174 (300)
T ss_pred hcCccCccHHHHHHHHHHHHHHHHhCCCcEEeecccCC-----------------------hHHHHHHHHHHHHh---CC
Confidence 133444455566666666699988764321 11233344555544 88
Q ss_pred eeEEeecCCCHH------HHHHHHHhcC-C-CceEEeeccCCCCCchHHHHHH--HHcCCeEEEeccCCCCCCCCcccCC
Q 021693 154 VRSIGISNYDIF------LTRDCLAYSK-V-KPVVNQFETHPYFQRDSLVKFC--QKHGICVTAHTPLGGAVANTEWFGT 223 (309)
Q Consensus 154 ir~iGvs~~~~~------~l~~~~~~~~-~-~~~~~q~~~~~~~~~~~ll~~~--~~~gi~v~a~~pl~~G~l~~~~~~~ 223 (309)
=-.|+++-.+.. -+.++.+... . .....-++....++-..+++.. ...++++++|-- .|- .++.
T Consensus 175 p~wISfT~~d~~~lr~Gt~l~eaa~~~~~~~~iaa~gvNC~~p~~~~a~i~~l~~~~~~~piivYPN--SGe----~~d~ 248 (300)
T COG2040 175 PAWISFTLNDDTRLRDGTPLSEAAAILAGLPNIAALGVNCCHPDHIPAAIEELSKLLTGKPIIVYPN--SGE----QYDP 248 (300)
T ss_pred ceEEEEEeCCCCccCCCccHHHHHHHHhcCcchhheeeccCChhhhHHHHHHHHhcCCCCceEEcCC--ccc----ccCc
Confidence 889998876322 3445544432 2 2334444444433446777777 345788888854 331 1100
Q ss_pred c-cCCCcHHHHHHHHHcCCCHHHHHHHHHhcCCcEEecCC--CChhHHHHhhcccc
Q 021693 224 V-SCLDDPVLKGLAEKYKRTVAQTVLRWGIQRNTAVIPKT--SKLERLEENFKVFD 276 (309)
Q Consensus 224 ~-~~~~~~~l~~ia~~~~~s~aq~al~~~l~~~~~vi~g~--~~~~~l~~n~~~~~ 276 (309)
. .....+ ...--+-.+++..|+-. |..+|-|+ +++.|+.+..++++
T Consensus 249 ~~k~w~~p------~~~~~~~~~~a~~w~~~-GA~iiGGCCrt~p~~I~ei~~~~~ 297 (300)
T COG2040 249 AGKTWHGP------ALSADSYSTLAKSWVEA-GARIIGGCCRTGPAHIAEIAKALK 297 (300)
T ss_pred CCCcCCCC------CCchhHHHHHHHHHHhc-ccceeeeccCCChHHHHHHHHHHh
Confidence 0 000000 00001235667888654 55556664 67788877766553
No 86
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=40.77 E-value=2.9e+02 Score=25.32 Aligned_cols=115 Identities=15% Similarity=0.110 Sum_probs=65.0
Q ss_pred cChhhHHHHHHHHHHcCCcEEecCCC---------CC-------C----HHHHHHHHHHHHhcCCCCCccEEEEecCCCC
Q 021693 21 MDESNIRDLIINAIKIGYRHIDCAAD---------YR-------N----EAEVGEALAEAFSTGLVKREDLFITTKLWNS 80 (309)
Q Consensus 21 ~~~~~~~~~l~~A~~~Gin~~DTA~~---------Yg-------s----E~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~ 80 (309)
++.++...+.+.|-+.|+.+|=|.-. || | .--+=+.+.+ .| ..++|+|=. .
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~---~g----kPvilStGm--a 143 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLSTPFDLESADFLEDLGVPRFKIPSGEITNAPLLKKIAR---FG----KPVILSTGM--A 143 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHh---cC----CcEEEECCC--C
Confidence 78888999999999999999876532 11 1 1111122222 22 236666643 3
Q ss_pred CcchHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCCeeEEeec
Q 021693 81 DHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIS 160 (309)
Q Consensus 81 ~~~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs 160 (309)
+.+.+..+++.-.+ -|.+.-++.++|+...++... .... +.++..|++.=. .-||+|
T Consensus 144 tl~Ei~~Av~~i~~-~G~~~~~i~llhC~s~YP~~~------------------~~~n---L~~I~~Lk~~f~-~pVG~S 200 (329)
T TIGR03569 144 TLEEIEAAVGVLRD-AGTPDSNITLLHCTTEYPAPF------------------EDVN---LNAMDTLKEAFD-LPVGYS 200 (329)
T ss_pred CHHHHHHHHHHHHH-cCCCcCcEEEEEECCCCCCCc------------------ccCC---HHHHHHHHHHhC-CCEEEC
Confidence 55777777777643 343212589999876432110 1112 234444444322 469999
Q ss_pred CCCHHHH
Q 021693 161 NYDIFLT 167 (309)
Q Consensus 161 ~~~~~~l 167 (309)
.|+....
T Consensus 201 dHt~G~~ 207 (329)
T TIGR03569 201 DHTLGIE 207 (329)
T ss_pred CCCccHH
Confidence 9987643
No 87
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=40.52 E-value=83 Score=22.29 Aligned_cols=58 Identities=19% Similarity=0.196 Sum_probs=34.9
Q ss_pred HHHHHHCCCeeEEeecCCCHHHHHHHHHhcCCCceEEeeccCCCCCchHHHHHHHHcCCeEEEec
Q 021693 145 MEDLVSMGLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHT 209 (309)
Q Consensus 145 L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~ 209 (309)
++++++.|++. + ...+..+.++......+++--+.+. .-.+.+..+|++++|+++-+.
T Consensus 3 ~~~~~ragkl~-~-----G~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 3 YEKVSQAKSIV-I-----GTKQTVKALKRGSVKEVVVAEDADP-RLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred hHHHHhcCCEE-E-----cHHHHHHHHHcCCeeEEEEECCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 45667777643 2 3455666666665544444333332 122678889999999987654
No 88
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=40.43 E-value=2.5e+02 Score=24.51 Aligned_cols=168 Identities=13% Similarity=0.086 Sum_probs=88.3
Q ss_pred eecCCCCcccccceeccccChhhHHHHHHHHHHcCCcEEecCC-------C----CC---CHHHHHHHHHHHHhcCCCCC
Q 021693 3 ITLNNGFKMPIIGLGVWRMDESNIRDLIINAIKIGYRHIDCAA-------D----YR---NEAEVGEALAEAFSTGLVKR 68 (309)
Q Consensus 3 ~~l~tg~~vs~lg~G~~~~~~~~~~~~l~~A~~~Gin~~DTA~-------~----Yg---sE~~lG~~l~~~~~~~~~~R 68 (309)
.+|+.|.+.+ .|.++.++..++++.-.+.||..++... . |- .++.+.+..+. . +.
T Consensus 6 ~TlRDG~Q~~-----~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~----~--~~ 74 (263)
T cd07943 6 VTLRDGMHAV-----RHQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEA----L--KQ 74 (263)
T ss_pred CCCCcCcccC-----CeecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHh----c--cC
Confidence 4578888764 2456678889999999999999999971 1 21 23333333222 1 23
Q ss_pred ccEEEEecCCCCCcchHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHH
Q 021693 69 EDLFITTKLWNSDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDL 148 (309)
Q Consensus 69 ~~~~i~tK~~~~~~~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 148 (309)
.++....- ..... .+.++.+++ .|+|.+-++. + ......+.+..+..
T Consensus 75 ~~~~~~~~---~~~~~-~~~i~~a~~-~g~~~iri~~-~---------------------------~s~~~~~~~~i~~a 121 (263)
T cd07943 75 AKLGVLLL---PGIGT-VDDLKMAAD-LGVDVVRVAT-H---------------------------CTEADVSEQHIGAA 121 (263)
T ss_pred CEEEEEec---CCccC-HHHHHHHHH-cCCCEEEEEe-c---------------------------hhhHHHHHHHHHHH
Confidence 33332221 11111 255666654 4777666543 1 11134567788888
Q ss_pred HHCCCeeEEeec---CCCHHHHHHHHHhc-CCCceEEeeccC--CCCCc--hHHHHHHHHc----CCeEEEeccCCCC
Q 021693 149 VSMGLVRSIGIS---NYDIFLTRDCLAYS-KVKPVVNQFETH--PYFQR--DSLVKFCQKH----GICVTAHTPLGGA 214 (309)
Q Consensus 149 ~~~Gkir~iGvs---~~~~~~l~~~~~~~-~~~~~~~q~~~~--~~~~~--~~ll~~~~~~----gi~v~a~~pl~~G 214 (309)
++.|.--.+.++ .++++.+.++.+.. ...+..+.+.=+ ...+. ..++..++++ -+++.++.-++.+
T Consensus 122 k~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA 199 (263)
T cd07943 122 RKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLGLA 199 (263)
T ss_pred HHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcchH
Confidence 888986555542 34555544443332 122333333222 12222 4566666654 2455555555544
No 89
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=40.40 E-value=2.5e+02 Score=24.43 Aligned_cols=63 Identities=10% Similarity=0.036 Sum_probs=34.5
Q ss_pred HHHHHHHHCCCeeEEeecCC-CHHHHHHHHHhcCCCceEEeeccC-CCCCchHHHHHHHHcCCeE
Q 021693 143 HAMEDLVSMGLVRSIGISNY-DIFLTRDCLAYSKVKPVVNQFETH-PYFQRDSLVKFCQKHGICV 205 (309)
Q Consensus 143 ~~L~~l~~~Gkir~iGvs~~-~~~~l~~~~~~~~~~~~~~q~~~~-~~~~~~~ll~~~~~~gi~v 205 (309)
+.+.++++.-.+.-|+.... +++.+.++++..++.-++.---++ .-..-.++.+.|+++|+.+
T Consensus 189 ~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 189 ELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYLAERGIPV 253 (254)
T ss_pred HHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHHHCCCcc
Confidence 34455555545555555443 556788887766454332211111 1111267889999998864
No 90
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=40.25 E-value=40 Score=22.54 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=19.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHh
Q 021693 231 VLKGLAEKYKRTVAQTVLRWGI 252 (309)
Q Consensus 231 ~l~~ia~~~~~s~aq~al~~~l 252 (309)
.+.+||+++|+++.++|..|+.
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~ 36 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAE 36 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHH
Confidence 3678999999999999999975
No 91
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=40.10 E-value=2.3e+02 Score=23.98 Aligned_cols=80 Identities=16% Similarity=0.266 Sum_probs=46.1
Q ss_pred cccChhhHHHHHHHHHHcCCcEEecCCCCCCHHHHHHHHHHHHhcCCCCCccEEEEecCCCCCc--chHHHHHHHHHHhh
Q 021693 19 WRMDESNIRDLIINAIKIGYRHIDCAADYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNSDH--GHVLEACKDSLKKL 96 (309)
Q Consensus 19 ~~~~~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~--~~i~~~ve~SL~~L 96 (309)
+..++++..+++..+++.|+.++|.=-....+ .+...... . ..+.+++++...+...+ +.+...+++.. .+
T Consensus 70 ~~~~~~~~~~ll~~~~~~~~d~iDiE~~~~~~-~~~~~~~~---~--~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~-~~ 142 (224)
T PF01487_consen 70 FQGSEEEYLELLERAIRLGPDYIDIELDLFPD-DLKSRLAA---R--KGGTKIILSYHDFEKTPSWEELIELLEEMQ-EL 142 (224)
T ss_dssp BSS-HHHHHHHHHHHHHHTSSEEEEEGGCCHH-HHHHHHHH---H--HTTSEEEEEEEESS---THHHHHHHHHHHH-HT
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEEcccchh-HHHHHHHH---h--hCCCeEEEEeccCCCCCCHHHHHHHHHHHH-hc
Confidence 45678889999999999999999985442222 22111111 1 14667877777544444 34555555554 67
Q ss_pred CCCceeEEE
Q 021693 97 QLDYLDLYL 105 (309)
Q Consensus 97 ~~d~iDl~~ 105 (309)
|.|.+=+..
T Consensus 143 gadivKia~ 151 (224)
T PF01487_consen 143 GADIVKIAV 151 (224)
T ss_dssp T-SEEEEEE
T ss_pred CCCeEEEEe
Confidence 766555543
No 92
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=40.06 E-value=2.3e+02 Score=24.06 Aligned_cols=79 Identities=8% Similarity=0.087 Sum_probs=50.7
Q ss_pred eeccccChhhHHHHHHHHHHcCCcEEecCCCCC-CHHHHH--HHHHHHHhcCCCCCccEEEEecCCCCCcchHHHHHHHH
Q 021693 16 LGVWRMDESNIRDLIINAIKIGYRHIDCAADYR-NEAEVG--EALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDS 92 (309)
Q Consensus 16 ~G~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg-sE~~lG--~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~i~~~ve~S 92 (309)
+-+..+++++...+.+.+.+.|..|+=|+..|+ .-..++ +.+++... .+-.+..+. +..+.+...+-++.-
T Consensus 124 lE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~----~~v~IKaaG--Girt~~~a~~~i~aG 197 (211)
T TIGR00126 124 IETGLLTDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVG----DTIGVKASG--GVRTAEDAIAMIEAG 197 (211)
T ss_pred EecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhc----cCCeEEEeC--CCCCHHHHHHHHHHh
Confidence 444447778888999999999999999999996 111111 22333110 122233332 334567888888888
Q ss_pred HHhhCCCc
Q 021693 93 LKKLQLDY 100 (309)
Q Consensus 93 L~~L~~d~ 100 (309)
-.|+|++.
T Consensus 198 a~riGts~ 205 (211)
T TIGR00126 198 ASRIGASA 205 (211)
T ss_pred hHHhCcch
Confidence 89999864
No 93
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=40.05 E-value=2.6e+02 Score=24.59 Aligned_cols=74 Identities=18% Similarity=0.090 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHCCCeeEEeecCCCHHHHHHHHHhcCCCceEEeeccCCCCCchHHHHHHHHcCCeEEEeccCCCC
Q 021693 139 ETTWHAMEDLVSMGLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTPLGGA 214 (309)
Q Consensus 139 ~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~G 214 (309)
+.+...++.+++.-.+ -|-+-++++..++.+++...-.+.+|-+.... .....+++.++++|..++++.--..|
T Consensus 55 ~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~G~~iINsIs~~~-~~~~~~~~l~~~~g~~vv~m~~~~~g 128 (261)
T PRK07535 55 ETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAKGPPLINSVSAEG-EKLEVVLPLVKKYNAPVVALTMDDTG 128 (261)
T ss_pred HHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCCCCCEEEeCCCCC-ccCHHHHHHHHHhCCCEEEEecCCCC
Confidence 3445555555543222 37889999999999999853345555554322 12357899999999999987644345
No 94
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=39.76 E-value=86 Score=27.41 Aligned_cols=77 Identities=16% Similarity=0.257 Sum_probs=48.6
Q ss_pred hhhHHHHHHHHHHcCCcEEecCCCCC--CHHHHHHHHHHHHhcCCCCCccEEEEecCCCCCc--------chHHHHHHHH
Q 021693 23 ESNIRDLIINAIKIGYRHIDCAADYR--NEAEVGEALAEAFSTGLVKREDLFITTKLWNSDH--------GHVLEACKDS 92 (309)
Q Consensus 23 ~~~~~~~l~~A~~~Gin~~DTA~~Yg--sE~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~--------~~i~~~ve~S 92 (309)
.....+.++.+-+.|++.+..++..- ++...-++++.+ .+..+.+.|-++..++ +...+.+++-
T Consensus 83 q~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~------~~~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~d 156 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKA------KEEGFKVLSEVGKKDPESDFSLDPEELIEQAKRD 156 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHH------CCTTSEEEEEES-SSHHHHTT--CCHHHHHHHHH
T ss_pred cChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHH------HHCCCEEeecccCCCchhcccCCHHHHHHHHHHH
Confidence 34567889999999999999998875 466666777772 4455788887765543 4566666666
Q ss_pred HHhhCCCceeEEEeecC
Q 021693 93 LKKLQLDYLDLYLVHFP 109 (309)
Q Consensus 93 L~~L~~d~iDl~~lH~p 109 (309)
|+. | .|.+++..-
T Consensus 157 LeA-G---A~~ViiEar 169 (244)
T PF02679_consen 157 LEA-G---ADKVIIEAR 169 (244)
T ss_dssp HHH-T---ECEEEE--T
T ss_pred HHC-C---CCEEEEeee
Confidence 664 4 677777654
No 95
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=38.91 E-value=1.5e+02 Score=24.74 Aligned_cols=25 Identities=4% Similarity=0.211 Sum_probs=15.6
Q ss_pred HHHHHHHHCCCeeEEeecCCCHHHH
Q 021693 143 HAMEDLVSMGLVRSIGISNYDIFLT 167 (309)
Q Consensus 143 ~~L~~l~~~Gkir~iGvs~~~~~~l 167 (309)
..+.+......++.+|++++....+
T Consensus 89 ~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 89 AQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred HHHHhhcCCcEEEEEecCChhhHHH
Confidence 3333333346789999998765443
No 96
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=38.78 E-value=1.8e+02 Score=24.80 Aligned_cols=72 Identities=14% Similarity=0.035 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHCCCeeEEeecCCC-------HHHHHHHHHhcCCCceEEeeccCCCCC--------------------
Q 021693 138 LETTWHAMEDLVSMGLVRSIGISNYD-------IFLTRDCLAYSKVKPVVNQFETHPYFQ-------------------- 190 (309)
Q Consensus 138 ~~~~~~~L~~l~~~Gkir~iGvs~~~-------~~~l~~~~~~~~~~~~~~q~~~~~~~~-------------------- 190 (309)
...=+++-.+|.++|||+++=+|.-+ +..|.+.+...+++...+-..|.-+..
T Consensus 78 y~~Ri~aA~~ly~~gKV~~LLlSGDN~~~sYnEp~tM~kdL~~~GVp~~~i~lDyAGFrTLDSvvRA~kVF~~~~ftIIt 157 (235)
T COG2949 78 YTYRIDAAIALYKAGKVNYLLLSGDNATVSYNEPRTMRKDLIAAGVPAKNIFLDYAGFRTLDSVVRARKVFGTNDFTIIT 157 (235)
T ss_pred HHHHHHHHHHHHhcCCeeEEEEecCCCcccccchHHHHHHHHHcCCCHHHeeecccCccHHHHHHHHHHHcCcCcEEEEe
Confidence 34456777899999999999999754 334555555556655444444433221
Q ss_pred ----chHHHHHHHHcCCeEEEec
Q 021693 191 ----RDSLVKFCQKHGICVTAHT 209 (309)
Q Consensus 191 ----~~~ll~~~~~~gi~v~a~~ 209 (309)
-+..+=.|+.+||.-+++.
T Consensus 158 Q~FHceRAlfiA~~~gIdAic~~ 180 (235)
T COG2949 158 QRFHCERALFIARQMGIDAICFA 180 (235)
T ss_pred cccccHHHHHHHHHhCCceEEec
Confidence 1345567888888777765
No 97
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=38.53 E-value=1.6e+02 Score=27.98 Aligned_cols=114 Identities=13% Similarity=0.063 Sum_probs=63.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCccEEEEecCCCC-CcchHHHHHHHHHHhhC-CCceeEEEeecCCCCCCCCCCCCCCC
Q 021693 46 DYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNS-DHGHVLEACKDSLKKLQ-LDYLDLYLVHFPVATKHTGVGTTDSA 123 (309)
Q Consensus 46 ~YgsE~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~-~~~~i~~~ve~SL~~L~-~d~iDl~~lH~p~~~~~~~~~~~~~~ 123 (309)
.||.|+.+-++|....++. +.+-++|.|=+... -.+.+..-+++.-++.- ...+.++.+|.|+.....
T Consensus 62 VfGg~~~L~~~i~~~~~~~--~p~~I~V~ttc~~eiIGdDi~~v~~~~~~~~p~~~~~~vi~v~t~gf~g~~-------- 131 (417)
T cd01966 62 ILGGGENLEEALDTLAERA--KPKVIGLLSTGLTETRGEDIAGALKQFRAEHPELADVPVVYVSTPDFEGSL-------- 131 (417)
T ss_pred EECCHHHHHHHHHHHHHhc--CCCEEEEECCCcccccccCHHHHHHHHHhhccccCCCeEEEecCCCCCCcH--------
Confidence 5788888888888876554 34556666654322 22455554444333311 013678889988763110
Q ss_pred CCcCCccccccCCcHHHHHHHHHH-H--------HHCCCeeEEeecCC---CHHHHHHHHHhcCCCceE
Q 021693 124 LDADGVLEIDTTISLETTWHAMED-L--------VSMGLVRSIGISNY---DIFLTRDCLAYSKVKPVV 180 (309)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~L~~-l--------~~~Gkir~iGvs~~---~~~~l~~~~~~~~~~~~~ 180 (309)
......++++|.+ + +..++|--||-++. +...++++++..++++.+
T Consensus 132 -----------~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v~~ 189 (417)
T cd01966 132 -----------EDGWAAAVEAIIEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEPII 189 (417)
T ss_pred -----------HHHHHHHHHHHHHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCceEE
Confidence 1223344444432 2 23566888875544 334677778777776533
No 98
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=37.80 E-value=2.4e+02 Score=24.59 Aligned_cols=70 Identities=14% Similarity=0.144 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHCCCeeEEeecCCCHHHHHHHHHhcCCCceEEeeccCCCCCchHHHHHHHHcCCeEEEeccCC
Q 021693 138 LETTWHAMEDLVSMGLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTPLG 212 (309)
Q Consensus 138 ~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~ 212 (309)
.+.+...++.+++.-.+- |.+-+++++.++++++.. .+.+|-+.. ...+..+++.++++|..++.+..-+
T Consensus 61 ~~rl~~~v~~l~~~~~~p-iSIDT~~~~v~~aaL~~g--~~iINdis~--~~~~~~~~~l~~~~~~~vV~m~~~~ 130 (258)
T cd00423 61 LERVIPVLRALAGEPDVP-ISVDTFNAEVAEAALKAG--ADIINDVSG--GRGDPEMAPLAAEYGAPVVLMHMDG 130 (258)
T ss_pred HHHHHHHHHHHHhcCCCe-EEEeCCcHHHHHHHHHhC--CCEEEeCCC--CCCChHHHHHHHHcCCCEEEECcCC
Confidence 345566667776653333 899999999999999986 344444432 2222678999999999998886443
No 99
>PRK07534 methionine synthase I; Validated
Probab=37.58 E-value=3.3e+02 Score=25.01 Aligned_cols=218 Identities=13% Similarity=0.049 Sum_probs=108.8
Q ss_pred cccChhhHHH-HHHHHHHcCCcEEecCCCCCC---------HHHHHHHHHHHHh--cCCC--CCccEEEEecCCCCC---
Q 021693 19 WRMDESNIRD-LIINAIKIGYRHIDCAADYRN---------EAEVGEALAEAFS--TGLV--KREDLFITTKLWNSD--- 81 (309)
Q Consensus 19 ~~~~~~~~~~-~l~~A~~~Gin~~DTA~~Ygs---------E~~lG~~l~~~~~--~~~~--~R~~~~i~tK~~~~~--- 81 (309)
|.++..+..+ +=+..+++|-+.+=|.....| +..+-+..+...+ +... .+.+++|+.=+++..
T Consensus 39 wsi~~Pe~V~~vH~~Yl~AGAdiI~TnTy~as~~~l~~~~~~~~~~~l~~~av~lAr~a~~~~~~~~~VaGsIGP~g~~l 118 (336)
T PRK07534 39 WNEDHPDNITALHQGFVDAGSDIILTNSFGGTAARLKLHDAQDRVHELNRAAAEIAREVADKAGRKVIVAGSVGPTGEIM 118 (336)
T ss_pred hcccCHHHHHHHHHHHHHhcCCEEEecCcccCHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecCCCcccc
Confidence 5555444444 444557999999987654223 1111111111100 0000 122466776664432
Q ss_pred -------cchHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCCe
Q 021693 82 -------HGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLV 154 (309)
Q Consensus 82 -------~~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gki 154 (309)
.+...+.....++.|--.-+|++++.-. ..+.|+..+++-+++.|+=
T Consensus 119 ~~~~~~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~--------------------------p~l~E~~a~~~~~~~~~~P 172 (336)
T PRK07534 119 EPMGALTHALAVEAFHEQAEGLKAGGADVLWVETI--------------------------SAPEEIRAAAEAAKLAGMP 172 (336)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecc--------------------------CCHHHHHHHHHHHHHcCCe
Confidence 1345666666666664355999998842 2356677777777767775
Q ss_pred eEEeecCCC---------HHHHHHHHHhcCCCceEEeeccCC-CCC-chHHHHHHHHc-CCeEEEeccCCCCCCCCcccC
Q 021693 155 RSIGISNYD---------IFLTRDCLAYSKVKPVVNQFETHP-YFQ-RDSLVKFCQKH-GICVTAHTPLGGAVANTEWFG 222 (309)
Q Consensus 155 r~iGvs~~~---------~~~l~~~~~~~~~~~~~~q~~~~~-~~~-~~~ll~~~~~~-gi~v~a~~pl~~G~l~~~~~~ 222 (309)
-.+.++..+ ...+...+...+..++.+-+|... ... ...++...... ++.+++|-- .|. +.+..
T Consensus 173 v~vSft~~~~g~l~~G~~~~~~~~~~~~~~~~~~avGvNC~~gp~~~~~~l~~~~~~~~~~pl~vyPN--aG~--p~~~~ 248 (336)
T PRK07534 173 WCGTMSFDTAGRTMMGLTPADLADLVEKLGEPPLAFGANCGVGASDLLRTVLGFTAQGPERPIIAKGN--AGI--PKYVD 248 (336)
T ss_pred EEEEEEECCCCeeCCCCcHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEcC--CCC--cccCC
Confidence 556555422 222333333223334666666553 111 13334444333 466666542 231 00000
Q ss_pred CccCCCcHHHHHHHHHcCCCHHHHHHHHHhcCCcEEecCC--CChhHHHHhhcccc
Q 021693 223 TVSCLDDPVLKGLAEKYKRTVAQTVLRWGIQRNTAVIPKT--SKLERLEENFKVFD 276 (309)
Q Consensus 223 ~~~~~~~~~l~~ia~~~~~s~aq~al~~~l~~~~~vi~g~--~~~~~l~~n~~~~~ 276 (309)
...... ... ...++.+-.| ...|+.+|=|+ ++|+||++..+.++
T Consensus 249 ~~~~~~------~~p---~~~~~~~~~~-~~~Ga~iIGGCCGTtP~hI~~la~~l~ 294 (336)
T PRK07534 249 GHIHYD------GTP---ELMAEYAVLA-RDAGARIIGGCCGTMPEHLAAMRAALD 294 (336)
T ss_pred CccccC------CCH---HHHHHHHHHH-HHcCCcEEeeecCCCHHHHHHHHHHHc
Confidence 000000 000 0145666777 45577777775 88999988887664
No 100
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=36.59 E-value=2.2e+02 Score=24.51 Aligned_cols=52 Identities=10% Similarity=0.104 Sum_probs=36.5
Q ss_pred CHHHHHHHHHhcCCCceEE--eeccCCCCCc-----hHHHHHHHHcCCeEEEeccCCCC
Q 021693 163 DIFLTRDCLAYSKVKPVVN--QFETHPYFQR-----DSLVKFCQKHGICVTAHTPLGGA 214 (309)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~--q~~~~~~~~~-----~~ll~~~~~~gi~v~a~~pl~~G 214 (309)
++.+++.+.+.+++.+..+ -+++|.+..+ ..+.++++.-|-.-+.+-|+..|
T Consensus 50 p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~ 108 (272)
T COG4130 50 PAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDG 108 (272)
T ss_pred CHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCC
Confidence 4556677777776654432 2445555443 57999999999999999999887
No 101
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=36.54 E-value=3.1e+02 Score=24.35 Aligned_cols=165 Identities=11% Similarity=0.049 Sum_probs=85.2
Q ss_pred cChhhHHHHHHHHHHcCCcEEecC----------CCCC-CHHHHHHHHHHHHhcCCCCCccEEEEecCCCCCcchHHHHH
Q 021693 21 MDESNIRDLIINAIKIGYRHIDCA----------ADYR-NEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEAC 89 (309)
Q Consensus 21 ~~~~~~~~~l~~A~~~Gin~~DTA----------~~Yg-sE~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~i~~~v 89 (309)
.+.++..++.+.+.+.|+..|+.- ..|+ +.+.+-+.++...+ .-++-|..|+.... +.+ ..+
T Consensus 99 ~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~-----~~~~Pv~vKl~~~~-~~~-~~~ 171 (296)
T cd04740 99 STVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKK-----ATDVPVIVKLTPNV-TDI-VEI 171 (296)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHh-----ccCCCEEEEeCCCc-hhH-HHH
Confidence 456778888888889999988872 2343 45666666665211 11467888875432 222 233
Q ss_pred HHHHHhhCCCceeEEEe-ecC--CCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCCeeEEeecCC-CHH
Q 021693 90 KDSLKKLQLDYLDLYLV-HFP--VATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGISNY-DIF 165 (309)
Q Consensus 90 e~SL~~L~~d~iDl~~l-H~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~-~~~ 165 (309)
-+.+...|.|.|++.-- +.. +.....+.... ..-...+ .....-.++.+.++++.=.+.-||+... +++
T Consensus 172 a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~-~~gg~sg------~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~ 244 (296)
T cd04740 172 ARAAEEAGADGLTLINTLKGMAIDIETRKPILGN-VTGGLSG------PAIKPIALRMVYQVYKAVEIPIIGVGGIASGE 244 (296)
T ss_pred HHHHHHcCCCEEEEECCCcccccccccCceeecC-CcceecC------cccchHHHHHHHHHHHhcCCCEEEECCCCCHH
Confidence 34567788777765310 000 00000000000 0000001 0111235666777776656888888886 677
Q ss_pred HHHHHHHhcCCCceEEeeccCCCCCc-------hHHHHHHHHcC
Q 021693 166 LTRDCLAYSKVKPVVNQFETHPYFQR-------DSLVKFCQKHG 202 (309)
Q Consensus 166 ~l~~~~~~~~~~~~~~q~~~~~~~~~-------~~ll~~~~~~g 202 (309)
.+.+++.. +. +.+|+--..+... +++-++.+++|
T Consensus 245 da~~~l~~-GA--d~V~igra~l~~p~~~~~i~~~l~~~~~~~g 285 (296)
T cd04740 245 DALEFLMA-GA--SAVQVGTANFVDPEAFKEIIEGLEAYLDEEG 285 (296)
T ss_pred HHHHHHHc-CC--CEEEEchhhhcChHHHHHHHHHHHHHHHHcC
Confidence 88888864 33 4555443332211 34555566655
No 102
>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]
Probab=36.12 E-value=4.1e+02 Score=25.75 Aligned_cols=86 Identities=14% Similarity=0.127 Sum_probs=60.5
Q ss_pred cChhhHHHHHHHHHHcCCcEEecCCCCC--CHHHHHHHHHHHHhcCCCCCccEEEEecCCCCCcchHHHHHHHHHHhhCC
Q 021693 21 MDESNIRDLIINAIKIGYRHIDCAADYR--NEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKKLQL 98 (309)
Q Consensus 21 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg--sE~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~i~~~ve~SL~~L~~ 98 (309)
.+.+-+.+++.+..++|.+.|--++.=| +-..+|+.++ +++.+..-|+++.|+|.+++...-.+. .-+--+ .-|-
T Consensus 201 se~~fl~eI~~aV~Kag~~tvnipdTVgia~P~~y~dLI~-y~~tn~~~~e~v~Is~HcHND~G~a~A-nt~~g~-~AGA 277 (560)
T KOG2367|consen 201 SELEFLLEILGAVIKAGVTTVNIPDTVGIATPNEYGDLIE-YLKTNTPGREKVCISTHCHNDLGCATA-NTELGL-LAGA 277 (560)
T ss_pred CcHHHHHHHHHHHHHhCCccccCcceecccChHHHHHHHH-HHHccCCCceeEEEEEeecCCccHHHH-HHHHHh-hcCc
Confidence 4566789999999999999987777666 4667888886 455665569999999998665442222 222222 2477
Q ss_pred CceeEEEeecC
Q 021693 99 DYLDLYLVHFP 109 (309)
Q Consensus 99 d~iDl~~lH~p 109 (309)
++||..++-.-
T Consensus 278 ~~VE~~i~GiG 288 (560)
T KOG2367|consen 278 RQVEVTINGIG 288 (560)
T ss_pred ceEEEEeeccc
Confidence 89999887653
No 103
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=36.08 E-value=1.3e+02 Score=27.74 Aligned_cols=69 Identities=13% Similarity=-0.010 Sum_probs=40.9
Q ss_pred HHHHHHHHHHCCCee-EEeecCCCHHHHHHHHHhcCCCceEEeeccCCCC---CchHHHHHHHHcCCeEEEeccC
Q 021693 141 TWHAMEDLVSMGLVR-SIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYF---QRDSLVKFCQKHGICVTAHTPL 211 (309)
Q Consensus 141 ~~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~ll~~~~~~gi~v~a~~pl 211 (309)
-++.+.+|+++..+. ..|=+.++...+..+++...+ .++|+.....- .-..+..+|+++|+.++..+-+
T Consensus 227 ~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~--d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~ 299 (365)
T cd03318 227 NLDGLARLRSRNRVPIMADESVSGPADAFELARRGAA--DVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTML 299 (365)
T ss_pred cHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCC--CeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcc
Confidence 356667777665544 455555667777777665433 45555544321 1256777888888887655433
No 104
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=35.41 E-value=2.6e+02 Score=24.06 Aligned_cols=112 Identities=12% Similarity=0.104 Sum_probs=60.6
Q ss_pred HHHHHHHhcCCCceEEeeccCCCCCc-hHHHHHHHHcCCeEEEeccCCCCCCCCcccCCccCCCcHHHHHHHHHcCC---
Q 021693 166 LTRDCLAYSKVKPVVNQFETHPYFQR-DSLVKFCQKHGICVTAHTPLGGAVANTEWFGTVSCLDDPVLKGLAEKYKR--- 241 (309)
Q Consensus 166 ~l~~~~~~~~~~~~~~q~~~~~~~~~-~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~l~~ia~~~~~--- 241 (309)
.++...+..++|....+.+-. .... ..+.+..++.|+..++..-+..- .....+..+|++.|+
T Consensus 49 ~~~~qA~algiPl~~~~~~~~-~e~~~~~l~~~l~~~gv~~vv~GdI~s~------------~qr~~~e~vc~~~gl~~~ 115 (222)
T TIGR00289 49 LTDLVAEAVGIPLIKLYTSGE-EEKEVEDLAGQLGELDVEALCIGAIESN------------YQKSRIDKVCRELGLKSI 115 (222)
T ss_pred HHHHHHHHcCCCeEEEEcCCc-hhHHHHHHHHHHHHcCCCEEEECccccH------------HHHHHHHHHHHHcCCEEe
Confidence 344444444565443333221 1111 45666666767666655543322 233566677777653
Q ss_pred ------CHHHHHHHHHhcCCc-EEecCCCChhHHHHhhccccccCCHHHHHHHHchhccCc
Q 021693 242 ------TVAQTVLRWGIQRNT-AVIPKTSKLERLEENFKVFDFELSKEDMDVIKSIDRKYR 295 (309)
Q Consensus 242 ------s~aq~al~~~l~~~~-~vi~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~~~~~~ 295 (309)
+..++ +.+ +..|. ++|+.+... .|.+. .++..|+++.+++|.++.++..
T Consensus 116 ~PLW~~d~~~l-~e~-i~~Gf~aiIv~v~~~-gL~~~--~LGr~id~~~~~~L~~l~~~~g 171 (222)
T TIGR00289 116 APLWHADPEKL-MYE-VAEKFEVIIVSVSAM-GLDES--WLGRRIDKECIDDLKRLNEKYG 171 (222)
T ss_pred ccccCCCHHHH-HHH-HHcCCeEEEEEEccC-CCChH--HcCCccCHHHHHHHHHHHhhcC
Confidence 45555 354 46774 556555433 34322 3556899999999988766543
No 105
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=35.35 E-value=1.3e+02 Score=27.88 Aligned_cols=69 Identities=9% Similarity=-0.026 Sum_probs=50.2
Q ss_pred HHHHHHHHHHCCCee-EEeecCCCHHHHHHHHHhcCCCceEEeeccCCCC---CchHHHHHHHHcCCeEEEeccC
Q 021693 141 TWHAMEDLVSMGLVR-SIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYF---QRDSLVKFCQKHGICVTAHTPL 211 (309)
Q Consensus 141 ~~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~ll~~~~~~gi~v~a~~pl 211 (309)
-++.|.+|++...+. ..|=|.++...+..+++... ..++|......- .-..+.+.|+++|+.++.++..
T Consensus 202 d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a--~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 202 NQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERL--IDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGPT 274 (361)
T ss_pred cHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCC--CCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCCC
Confidence 467888888887665 66777788888888887653 467777765422 2367899999999999876543
No 106
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=35.26 E-value=2.5e+02 Score=22.92 Aligned_cols=91 Identities=11% Similarity=-0.044 Sum_probs=53.0
Q ss_pred CeeEEeecCCCHHHH------HHHHHhc-CCCceEEeeccCCCCC-------c--------hHHHHHHHHcCCeEEEecc
Q 021693 153 LVRSIGISNYDIFLT------RDCLAYS-KVKPVVNQFETHPYFQ-------R--------DSLVKFCQKHGICVTAHTP 210 (309)
Q Consensus 153 kir~iGvs~~~~~~l------~~~~~~~-~~~~~~~q~~~~~~~~-------~--------~~ll~~~~~~gi~v~a~~p 210 (309)
.|...|++..+...+ ..++... ..+.+++++-.|-... . ..+++.++++|..++..+|
T Consensus 36 ~v~N~gi~G~ts~~~~~~~~~~~~l~~~~~pdlVii~~G~ND~~~~~~~~~~~~~~~~~nl~~ii~~~~~~~~~~il~tp 115 (198)
T cd01821 36 TVVNHAKGGRSSRSFRDEGRWDAILKLIKPGDYVLIQFGHNDQKPKDPEYTEPYTTYKEYLRRYIAEARAKGATPILVTP 115 (198)
T ss_pred EEEeCCCCCccHHHHHhCCcHHHHHhhCCCCCEEEEECCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 577889998876643 2344332 3455677776664222 1 3688889999999888887
Q ss_pred CCCCCCCCcc-cCCccCCCcHHHHHHHHHcCCCH
Q 021693 211 LGGAVANTEW-FGTVSCLDDPVLKGLAEKYKRTV 243 (309)
Q Consensus 211 l~~G~l~~~~-~~~~~~~~~~~l~~ia~~~~~s~ 243 (309)
....-..... ....-..-.+.++++|+++++..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 149 (198)
T cd01821 116 VTRRTFDEGGKVEDTLGDYPAAMRELAAEEGVPL 149 (198)
T ss_pred ccccccCCCCcccccchhHHHHHHHHHHHhCCCE
Confidence 6432111000 00000011367888898888753
No 107
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=34.72 E-value=2e+02 Score=25.10 Aligned_cols=104 Identities=10% Similarity=-0.082 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHC-CCeeEEeecC-
Q 021693 84 HVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSM-GLVRSIGISN- 161 (309)
Q Consensus 84 ~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-Gkir~iGvs~- 161 (309)
.-+..+-+.|.++|+++|.+-+....... .. +.... .. ..++.++.+++. +.++...+..
T Consensus 22 ~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~-~~---------~~~~~-----~~---~~~e~i~~~~~~~~~~~~~~~~~~ 83 (263)
T cd07943 22 EQVRAIARALDAAGVPLIEVGHGDGLGGS-SL---------NYGFA-----AH---TDEEYLEAAAEALKQAKLGVLLLP 83 (263)
T ss_pred HHHHHHHHHHHHcCCCEEEeecCCCCCCc-cc---------ccCCC-----CC---ChHHHHHHHHHhccCCEEEEEecC
Confidence 34455566688999999999865321110 00 00000 11 134455555332 3456555542
Q ss_pred --CCHHHHHHHHHhcCCCceEEeecc--CCCCCchHHHHHHHHcCCeEEEe
Q 021693 162 --YDIFLTRDCLAYSKVKPVVNQFET--HPYFQRDSLVKFCQKHGICVTAH 208 (309)
Q Consensus 162 --~~~~~l~~~~~~~~~~~~~~q~~~--~~~~~~~~ll~~~~~~gi~v~a~ 208 (309)
-+...++.+.+. ++ ..+.+.. |....-.+.+++++++|+.+...
T Consensus 84 ~~~~~~~i~~a~~~-g~--~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 84 GIGTVDDLKMAADL-GV--DVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred CccCHHHHHHHHHc-CC--CEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 234455555443 23 3333322 22212256788888888766543
No 108
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=34.12 E-value=20 Score=34.26 Aligned_cols=27 Identities=15% Similarity=0.334 Sum_probs=21.1
Q ss_pred HHHHcCCCHHHHHHHHHhcCC---cEEecC
Q 021693 235 LAEKYKRTVAQTVLRWGIQRN---TAVIPK 261 (309)
Q Consensus 235 ia~~~~~s~aq~al~~~l~~~---~~vi~g 261 (309)
++..||+|.+.-.|+|+++.. .++++|
T Consensus 112 VaGTHGKTTTTsmla~vl~~~gldPtf~iG 141 (459)
T COG0773 112 VAGTHGKTTTTSMLAWVLEAAGLDPTFLIG 141 (459)
T ss_pred EeCCCCchhHHHHHHHHHHhCCCCCEEEEC
Confidence 356679999999999999763 566666
No 109
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=33.84 E-value=3.9e+02 Score=24.96 Aligned_cols=80 Identities=13% Similarity=0.034 Sum_probs=53.5
Q ss_pred CCcHHHHHHHHHHHHHC-CC---eeEEeec--CCCHHHHHHHHHhcC-C------CceEEeeccCCCCCc----------
Q 021693 135 TISLETTWHAMEDLVSM-GL---VRSIGIS--NYDIFLTRDCLAYSK-V------KPVVNQFETHPYFQR---------- 191 (309)
Q Consensus 135 ~~~~~~~~~~L~~l~~~-Gk---ir~iGvs--~~~~~~l~~~~~~~~-~------~~~~~q~~~~~~~~~---------- 191 (309)
..+++++++++.+..++ |+ +-|+=+. |-+.++..++.+..+ . +..+|-++||+....
T Consensus 251 ~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~~~~~ps~~~i 330 (371)
T PRK14461 251 RYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVPGTPLGRSERERV 330 (371)
T ss_pred CCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEEecCCCCCCCCCCCCCHHHH
Confidence 56789999999988644 33 1122222 456666666666543 3 568899999985421
Q ss_pred hHHHHHHHHcCCeEEEeccCCCC
Q 021693 192 DSLVKFCQKHGICVTAHTPLGGA 214 (309)
Q Consensus 192 ~~ll~~~~~~gi~v~a~~pl~~G 214 (309)
....+.++++||.+..+...|.-
T Consensus 331 ~~F~~~L~~~gi~vtiR~s~G~D 353 (371)
T PRK14461 331 TTFQRILTDYGIPCTVRVERGVE 353 (371)
T ss_pred HHHHHHHHHCCceEEEeCCCCcC
Confidence 34666788999999998877554
No 110
>TIGR00035 asp_race aspartate racemase.
Probab=33.59 E-value=1.4e+02 Score=25.47 Aligned_cols=82 Identities=11% Similarity=-0.025 Sum_probs=50.9
Q ss_pred chHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCCeeEEeecCC
Q 021693 83 GHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGISNY 162 (309)
Q Consensus 83 ~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~ 162 (309)
+..++=++..-.+.+-++++.+.+++|+..+.... . .+-+.......+.+..+.|.+.| +..|-++..
T Consensus 17 ~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~------~-----~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCN 84 (229)
T TIGR00035 17 ELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAY------I-----LGRGEDRPRPILIDIAVKLENAG-ADFIIMPCN 84 (229)
T ss_pred HHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHH------H-----hcCCcchHHHHHHHHHHHHHHcC-CCEEEECCc
Confidence 45566666666778889999999999875311100 0 00001234556677777777655 799999988
Q ss_pred CHHH-HHHHHHhcCC
Q 021693 163 DIFL-TRDCLAYSKV 176 (309)
Q Consensus 163 ~~~~-l~~~~~~~~~ 176 (309)
++.. ++++.+...+
T Consensus 85 Tah~~~~~l~~~~~i 99 (229)
T TIGR00035 85 TAHKFAEDIQKAIGI 99 (229)
T ss_pred cHHHHHHHHHHhCCC
Confidence 7775 4444444444
No 111
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=33.28 E-value=59 Score=24.82 Aligned_cols=41 Identities=5% Similarity=-0.121 Sum_probs=35.2
Q ss_pred cChhhHHHHHHHHHHcCCcEEecCCCCC-CHHHHHHHHHHHH
Q 021693 21 MDESNIRDLIINAIKIGYRHIDCAADYR-NEAEVGEALAEAF 61 (309)
Q Consensus 21 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg-sE~~lG~~l~~~~ 61 (309)
.+.+.-.+++..+++.|.+.-+.|..|| +...+.+|++.+.
T Consensus 13 ys~EfK~~aV~~~~~~g~sv~evA~e~gIs~~tl~~W~r~y~ 54 (121)
T PRK09413 13 RTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQ 54 (121)
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHh
Confidence 4566667888999999999999999999 8999999998853
No 112
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=33.06 E-value=4.3e+02 Score=25.04 Aligned_cols=70 Identities=11% Similarity=-0.016 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHC------CCeeEEeecCCCHHHHHHHHHhcCCCceEEeeccCCCCC---chHHHHHHHHcCCeEEEecc
Q 021693 140 TTWHAMEDLVSM------GLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQ---RDSLVKFCQKHGICVTAHTP 210 (309)
Q Consensus 140 ~~~~~L~~l~~~------Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~---~~~ll~~~~~~gi~v~a~~p 210 (309)
+.++.|.+|++. ..=-..+=|.++...+..+++... ..++|+..+-.-. -..+..+|+++||.++..+.
T Consensus 279 ~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a--~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~ 356 (408)
T TIGR01502 279 AQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKA--GHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGT 356 (408)
T ss_pred hhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCC--CCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCC
Confidence 356677777755 333355666678888888887654 3677877764322 26789999999999998766
Q ss_pred C
Q 021693 211 L 211 (309)
Q Consensus 211 l 211 (309)
.
T Consensus 357 ~ 357 (408)
T TIGR01502 357 C 357 (408)
T ss_pred C
Confidence 5
No 113
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=32.99 E-value=4.8e+02 Score=25.53 Aligned_cols=113 Identities=12% Similarity=-0.007 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCccEEEEecCCCC-CcchHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCC
Q 021693 47 YRNEAEVGEALAEAFSTGLVKREDLFITTKLWNS-DHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALD 125 (309)
Q Consensus 47 YgsE~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~-~~~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~ 125 (309)
+|.++.+-+.|.+..++. +.+-++|.|=+... -.+.+..-+++.-+++ -++++.+|.|.+....
T Consensus 67 ~Gg~~kL~~~I~~~~~~~--~P~~I~V~tTC~~eiIGDDi~~v~~~~~~~~---~~pVi~v~t~~f~g~~---------- 131 (513)
T CHL00076 67 RGSQEKVVDNITRKDKEE--RPDLIVLTPTCTSSILQEDLQNFVDRASIES---DSDVILADVNHYRVNE---------- 131 (513)
T ss_pred cchHHHHHHHHHHHHHhc--CCCEEEECCCCchhhhhcCHHHHHHHhhccc---CCCEEEeCCCCCcccH----------
Confidence 466777777777654443 34445555543211 1144444443332233 3689999998652100
Q ss_pred cCCccccccCCcHHHHHHHHHH-----------HHHCCCeeEEeecC------CCHHHHHHHHHhcCCCce
Q 021693 126 ADGVLEIDTTISLETTWHAMED-----------LVSMGLVRSIGISN------YDIFLTRDCLAYSKVKPV 179 (309)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~L~~-----------l~~~Gkir~iGvs~------~~~~~l~~~~~~~~~~~~ 179 (309)
....+..+..+++.+.+ -+..++|--||.++ .+...++++++..++++.
T Consensus 132 -----~~g~~~~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn 197 (513)
T CHL00076 132 -----LQAADRTLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEIN 197 (513)
T ss_pred -----HHHHHHHHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEE
Confidence 00001112223332221 02346688898774 345678888888776543
No 114
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=32.65 E-value=2e+02 Score=26.10 Aligned_cols=73 Identities=14% Similarity=0.140 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHCCCee-EEeecCCCHHHHHHHHHhcCCCceEEeeccCCCC---CchHHHHHHHHcCCeEEEeccCCCC
Q 021693 140 TTWHAMEDLVSMGLVR-SIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYF---QRDSLVKFCQKHGICVTAHTPLGGA 214 (309)
Q Consensus 140 ~~~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~ll~~~~~~gi~v~a~~pl~~G 214 (309)
+-++.+.+|++.-.+. ..|=|.++...+..+++...+ +++|......- .-..+...|+++|+.++..+.+.+|
T Consensus 210 ~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~--dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~~es~ 286 (324)
T TIGR01928 210 DDLSMLDELAKGTITPICLDESITSLDDARNLIELGNV--KVINIKPGRLGGLTEVQKAIETCREHGAKVWIGGMLETG 286 (324)
T ss_pred hHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCC--CEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEcceEccc
Confidence 3457788888775554 667777888888888776543 56676665432 1257899999999999887666555
No 115
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=32.47 E-value=1e+02 Score=28.74 Aligned_cols=88 Identities=17% Similarity=0.106 Sum_probs=50.4
Q ss_pred HHHHHHHHHHCCCeeEEeecCCCHHHHHHHHHhcCCCceEEeeccCCCCCc--hHHHHHHHHcCCeEEEeccCCCCCCCC
Q 021693 141 TWHAMEDLVSMGLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQR--DSLVKFCQKHGICVTAHTPLGGAVANT 218 (309)
Q Consensus 141 ~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~ll~~~~~~gi~v~a~~pl~~G~l~~ 218 (309)
-.+++.+|.+.|.+.+|-.-.-.--.|..+...-.-.|. --|.....+ +.+++.|+++||.|+.-+ +|. +
T Consensus 11 ~~~a~~~l~~~g~~d~l~~d~LaE~tma~~~~~~~~~p~---~gY~~~~~~~L~~~L~~~~~~gIkvI~Na---Gg~-n- 82 (362)
T PF07287_consen 11 RPDAAVRLARGGDVDYLVGDYLAERTMAILARAKRKDPT---KGYAPDFVRDLRPLLPAAAEKGIKVITNA---GGL-N- 82 (362)
T ss_pred cHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHhhCCC---CCchHHHHHHHHHHHHHHHhCCCCEEEeC---CCC-C-
Confidence 456788888999999996544332222222211111111 012221111 679999999999998774 331 1
Q ss_pred cccCCccCCCcHHHHHHHHHcCCC
Q 021693 219 EWFGTVSCLDDPVLKGLAEKYKRT 242 (309)
Q Consensus 219 ~~~~~~~~~~~~~l~~ia~~~~~s 242 (309)
+..-.+.+++++++.|.+
T Consensus 83 ------p~~~a~~v~eia~e~Gl~ 100 (362)
T PF07287_consen 83 ------PAGCADIVREIARELGLS 100 (362)
T ss_pred ------HHHHHHHHHHHHHhcCCC
Confidence 112346788888888775
No 116
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=32.30 E-value=4.2e+02 Score=24.68 Aligned_cols=111 Identities=14% Similarity=0.126 Sum_probs=66.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCccEEEEecCCC-CCcchHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCC
Q 021693 46 DYRNEAEVGEALAEAFSTGLVKREDLFITTKLWN-SDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSAL 124 (309)
Q Consensus 46 ~YgsE~~lG~~l~~~~~~~~~~R~~~~i~tK~~~-~~~~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~ 124 (309)
.||.|..+-++|.+..++. +.+=++|.|=+.. .-.+.+..-+++.-++.+ +.++.+|.|......
T Consensus 68 V~Gg~~~L~~~i~~~~~~~--~P~~i~v~~tC~~~~iGdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~~--------- 133 (406)
T cd01967 68 VFGGEKKLKKAIKEAYERF--PPKAIFVYSTCPTGLIGDDIEAVAKEASKELG---IPVIPVNCEGFRGVS--------- 133 (406)
T ss_pred eeCcHHHHHHHHHHHHHhC--CCCEEEEECCCchhhhccCHHHHHHHHHHhhC---CCEEEEeCCCeeCCc---------
Confidence 4678888999998876654 3444666664322 112555555555444444 789999988652100
Q ss_pred CcCCccccccCCcHHHHHHHHHHHH---------HCCCeeEEeecCCC--HHHHHHHHHhcCCCce
Q 021693 125 DADGVLEIDTTISLETTWHAMEDLV---------SMGLVRSIGISNYD--IFLTRDCLAYSKVKPV 179 (309)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~L~~l~---------~~Gkir~iGvs~~~--~~~l~~~~~~~~~~~~ 179 (309)
.......++++|-+.. +.+.|--||..++. ...+.++++..++++.
T Consensus 134 ---------~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gi~~~ 190 (406)
T cd01967 134 ---------QSLGHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYNIGGDAWVIKPLLEELGIRVN 190 (406)
T ss_pred ---------ccHHHHHHHHHHHHHhcCCCCcCCCCCCeEEEEeccccchhHHHHHHHHHHcCCEEE
Confidence 0222444555555443 34568888877653 3578888888876543
No 117
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=32.25 E-value=3.2e+02 Score=23.27 Aligned_cols=84 Identities=20% Similarity=0.298 Sum_probs=55.9
Q ss_pred CCCCcccccceeccc--------------------------cChhhHHHHHHHHHHcCCcEEe-cCCCCCCHHHHHHHHH
Q 021693 6 NNGFKMPIIGLGVWR--------------------------MDESNIRDLIINAIKIGYRHID-CAADYRNEAEVGEALA 58 (309)
Q Consensus 6 ~tg~~vs~lg~G~~~--------------------------~~~~~~~~~l~~A~~~Gin~~D-TA~~YgsE~~lG~~l~ 58 (309)
..|+.+|.+-||-++ ++.+++..+=..|-+.||.++= +|+.--.|+. +.|.
T Consensus 91 ~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvpLvaPsTtdeRm--ell~ 168 (268)
T KOG4175|consen 91 PQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVPLVAPSTTDERM--ELLV 168 (268)
T ss_pred ccCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceEEEeeCCCChHHHH--HHHH
Confidence 457888888888765 4678888888888888888764 4444323433 3344
Q ss_pred HHHhcCCCCCccEEEEecCCCCC-cchHHHHHHHHHHhhC
Q 021693 59 EAFSTGLVKREDLFITTKLWNSD-HGHVLEACKDSLKKLQ 97 (309)
Q Consensus 59 ~~~~~~~~~R~~~~i~tK~~~~~-~~~i~~~ve~SL~~L~ 97 (309)
. ....-+|+.+..+... .+.+...+++-|+|.+
T Consensus 169 ~------~adsFiYvVSrmG~TG~~~svn~~l~~L~qrvr 202 (268)
T KOG4175|consen 169 E------AADSFIYVVSRMGVTGTRESVNEKLQSLLQRVR 202 (268)
T ss_pred H------hhcceEEEEEeccccccHHHHHHHHHHHHHHHH
Confidence 3 1334478888876554 3667777777777765
No 118
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=32.21 E-value=2.7e+02 Score=22.45 Aligned_cols=69 Identities=16% Similarity=0.159 Sum_probs=41.9
Q ss_pred ChhhHHHHHHHHHHcCCcEEecCCCCCCHHHHHHHHHHHHhcCCCCCc-cEEEEecCCCCC----cchHHHHHHHHHHhh
Q 021693 22 DESNIRDLIINAIKIGYRHIDCAADYRNEAEVGEALAEAFSTGLVKRE-DLFITTKLWNSD----HGHVLEACKDSLKKL 96 (309)
Q Consensus 22 ~~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~lG~~l~~~~~~~~~~R~-~~~i~tK~~~~~----~~~i~~~ve~SL~~L 96 (309)
+.+...++++.+.+.|++-+-+.. ..+-.+.+. .++ ++-|..++...+ .....+.+++..+ +
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g-----~~i~~~~~~-------~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~-~ 77 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP-----GYVRLAADA-------LAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAID-L 77 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH-----HHHHHHHHH-------hCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHH-c
Confidence 667789999999999999887653 222222222 233 566667776655 4555555555544 4
Q ss_pred CCCceeE
Q 021693 97 QLDYLDL 103 (309)
Q Consensus 97 ~~d~iDl 103 (309)
|.|.+.+
T Consensus 78 Gad~i~v 84 (201)
T cd00945 78 GADEIDV 84 (201)
T ss_pred CCCEEEE
Confidence 6554444
No 119
>PRK07094 biotin synthase; Provisional
Probab=32.20 E-value=3.8e+02 Score=24.10 Aligned_cols=120 Identities=13% Similarity=0.030 Sum_probs=64.7
Q ss_pred CcHHHHHHHHHHHHHCCCeeEEeecC-----CCHHHHHHHHHhcCCCceEEeeccCCCCCchHHHHHHHHcCCeEEEecc
Q 021693 136 ISLETTWHAMEDLVSMGLVRSIGISN-----YDIFLTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTP 210 (309)
Q Consensus 136 ~~~~~~~~~L~~l~~~Gkir~iGvs~-----~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~p 210 (309)
.+.+++.+..+.+++.| ++.+.++. ++.+.+.++++...-.+. +.+.++......+.++..++.|+..+..+.
T Consensus 70 ls~eei~~~~~~~~~~g-~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~-l~i~~~~g~~~~e~l~~Lk~aG~~~v~~gl 147 (323)
T PRK07094 70 LSPEEILECAKKAYELG-YRTIVLQSGEDPYYTDEKIADIIKEIKKELD-VAITLSLGERSYEEYKAWKEAGADRYLLRH 147 (323)
T ss_pred CCHHHHHHHHHHHHHCC-CCEEEEecCCCCCCCHHHHHHHHHHHHccCC-ceEEEecCCCCHHHHHHHHHcCCCEEEecc
Confidence 35778888888888876 56665542 244556666554432111 122334333456788889998977655432
Q ss_pred CCCCCCCCcccCCccCCCcHHHHHHHHHcCCCHHHH--HHHHHhcCC----cEEecCC--CChhHHHHhhc
Q 021693 211 LGGAVANTEWFGTVSCLDDPVLKGLAEKYKRTVAQT--VLRWGIQRN----TAVIPKT--SKLERLEENFK 273 (309)
Q Consensus 211 l~~G~l~~~~~~~~~~~~~~~l~~ia~~~~~s~aq~--al~~~l~~~----~~vi~g~--~~~~~l~~n~~ 273 (309)
=. ...+.+..+.. +.+..+. +++++...| ...|+|. .+.+++.+.+.
T Consensus 148 Es--------------~~~~~~~~i~~--~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~ 202 (323)
T PRK07094 148 ET--------------ADKELYAKLHP--GMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDIL 202 (323)
T ss_pred cc--------------CCHHHHHHhCC--CCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHH
Confidence 11 11123333322 3333333 455555554 3456663 56677666554
No 120
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=31.94 E-value=3.9e+02 Score=24.38 Aligned_cols=71 Identities=11% Similarity=-0.003 Sum_probs=40.3
Q ss_pred HHHHHHHHHCCCee-EEeecCCCHHHHHHHHHhcCCCceEEeeccCCCCCchHHHHHHHHcCCeEEEeccCCCC
Q 021693 142 WHAMEDLVSMGLVR-SIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTPLGGA 214 (309)
Q Consensus 142 ~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~G 214 (309)
++.|.+|++.-.+. +.|=|-++...+..+++... .+++|+....+-.-.++++.|+++|+.++..+.+.++
T Consensus 173 ~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a--~dvi~ik~~~~GGit~~lkiA~~~gi~v~v~s~~es~ 244 (327)
T PRK02901 173 VEELAELRRRVGVPIAADESIRRAEDPLRVARAGA--ADVAVLKVAPLGGVRAALDIAEQIGLPVVVSSALDTS 244 (327)
T ss_pred HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCC--CCEEEeCcchhCCHHHHHHHHHHcCCcEEEeCCcccH
Confidence 45555665543332 33444455556666655443 3566666655433356677788888887777666544
No 121
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=31.85 E-value=2e+02 Score=24.64 Aligned_cols=78 Identities=6% Similarity=-0.029 Sum_probs=46.7
Q ss_pred ceeccccChhhHHHHHHHHHHcCCcEEecCCCCC----CHHHHHHHHHHHHhcCCCCCccEEEEecCCCCCcchHHHHHH
Q 021693 15 GLGVWRMDESNIRDLIINAIKIGYRHIDCAADYR----NEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACK 90 (309)
Q Consensus 15 g~G~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg----sE~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~i~~~ve 90 (309)
.+=+.-+++++..++.+.+.+.|..|+=|+..|+ +.+.+-...+. -+.++-|-.=.+..+.+...+-++
T Consensus 127 IlEt~~L~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~-------~~~~~~IKasGGIrt~~~a~~~i~ 199 (221)
T PRK00507 127 IIETCLLTDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRET-------VGPRVGVKASGGIRTLEDALAMIE 199 (221)
T ss_pred EeecCcCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHH-------hCCCceEEeeCCcCCHHHHHHHHH
Confidence 3334446788889999999999999999999984 23333222222 122222221123344566666666
Q ss_pred HHHHhhCCC
Q 021693 91 DSLKKLQLD 99 (309)
Q Consensus 91 ~SL~~L~~d 99 (309)
.--.|+||.
T Consensus 200 aGA~riGtS 208 (221)
T PRK00507 200 AGATRLGTS 208 (221)
T ss_pred cCcceEccC
Confidence 666666664
No 122
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=31.73 E-value=3.2e+02 Score=23.18 Aligned_cols=170 Identities=12% Similarity=0.076 Sum_probs=86.0
Q ss_pred cChhhHHHHHHHHHHcCCcEEecC-CCCCC--HHHHHHHHHHHHhcCCCCCccEEEEecCCCCCcchHHHHHHHHHHhhC
Q 021693 21 MDESNIRDLIINAIKIGYRHIDCA-ADYRN--EAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKKLQ 97 (309)
Q Consensus 21 ~~~~~~~~~l~~A~~~Gin~~DTA-~~Ygs--E~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~i~~~ve~SL~~L~ 97 (309)
++.++..++++...+.||..|++. +..+. .+.+-+..+. . +...+...+. .....+...++.. ...|
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~----~--~~~~~~~~~~---~~~~~i~~~~~~~-~~~g 80 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREA----L--PNARLQALCR---ANEEDIERAVEAA-KEAG 80 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHH----H--HSSEEEEEEE---SCHHHHHHHHHHH-HHTT
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhh----h--cccccceeee---ehHHHHHHHHHhh-Hhcc
Confidence 677888999999999999999999 33331 2333333332 1 2223322222 2335556656543 4678
Q ss_pred CCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCCeeEEeecC---CCHHHHHHHHHhc
Q 021693 98 LDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGISN---YDIFLTRDCLAYS 174 (309)
Q Consensus 98 ~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~---~~~~~l~~~~~~~ 174 (309)
.+.+.++.==++... ......+.....+.+.+.....++.|.-..+++.. ++++.+.++.+..
T Consensus 81 ~~~i~i~~~~s~~~~--------------~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~ 146 (237)
T PF00682_consen 81 IDIIRIFISVSDLHI--------------RKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEAL 146 (237)
T ss_dssp SSEEEEEEETSHHHH--------------HHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHH
T ss_pred CCEEEecCcccHHHH--------------HHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHH
Confidence 887776642111000 00000010122455667777788999988888744 4555544444333
Q ss_pred -CCCceEEeeccC--CCCCc--hHHHHHHHHc----CCeEEEeccCCCC
Q 021693 175 -KVKPVVNQFETH--PYFQR--DSLVKFCQKH----GICVTAHTPLGGA 214 (309)
Q Consensus 175 -~~~~~~~q~~~~--~~~~~--~~ll~~~~~~----gi~v~a~~pl~~G 214 (309)
...+..+.+.=+ ...+. ..++...+++ .+++.++.-++.+
T Consensus 147 ~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla 195 (237)
T PF00682_consen 147 AEAGADIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLGLA 195 (237)
T ss_dssp HHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-H
T ss_pred HHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCccch
Confidence 112233333322 23332 4566666643 3666666655544
No 123
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=31.64 E-value=3.6e+02 Score=23.71 Aligned_cols=128 Identities=9% Similarity=0.101 Sum_probs=71.6
Q ss_pred eecCCCCcccccceeccccChhhHHHHHHHHHHcCCcEEecCCCCCC------------HHHHHHHHHHHHhcCCCCCcc
Q 021693 3 ITLNNGFKMPIIGLGVWRMDESNIRDLIINAIKIGYRHIDCAADYRN------------EAEVGEALAEAFSTGLVKRED 70 (309)
Q Consensus 3 ~~l~tg~~vs~lg~G~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Ygs------------E~~lG~~l~~~~~~~~~~R~~ 70 (309)
.+|+.|-+.+.+.| +.++..++....-+.||..|+....=++ ++.+-+..+. .. ++.+
T Consensus 4 ~TLRDG~q~~~~~f-----~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~----~~-~~~~ 73 (266)
T cd07944 4 CTLRDGGYVNNWDF-----GDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGD----SK-GNTK 73 (266)
T ss_pred CCcccCccccCccC-----CHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhh----hc-cCCE
Confidence 57888888775555 4778888888888999999998732121 2333333322 10 1344
Q ss_pred EEEEecCCCCCcchHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHH
Q 021693 71 LFITTKLWNSDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVS 150 (309)
Q Consensus 71 ~~i~tK~~~~~~~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 150 (309)
+.........+ .+.++.+ ...|++.|-+.. + ...++.+.+..+..|+
T Consensus 74 ~~~~~~~~~~~----~~~l~~a-~~~gv~~iri~~---~-------------------------~~~~~~~~~~i~~ak~ 120 (266)
T cd07944 74 IAVMVDYGNDD----IDLLEPA-SGSVVDMIRVAF---H-------------------------KHEFDEALPLIKAIKE 120 (266)
T ss_pred EEEEECCCCCC----HHHHHHH-hcCCcCEEEEec---c-------------------------cccHHHHHHHHHHHHH
Confidence 44444322211 2233333 234555444432 1 2236678888888888
Q ss_pred CCCeeEEeec---CCCHHHHHHHHHh
Q 021693 151 MGLVRSIGIS---NYDIFLTRDCLAY 173 (309)
Q Consensus 151 ~Gkir~iGvs---~~~~~~l~~~~~~ 173 (309)
.|.--.+++. .++++.+.++.+.
T Consensus 121 ~G~~v~~~~~~a~~~~~~~~~~~~~~ 146 (266)
T cd07944 121 KGYEVFFNLMAISGYSDEELLELLEL 146 (266)
T ss_pred CCCeEEEEEEeecCCCHHHHHHHHHH
Confidence 8875555533 3566655555443
No 124
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=31.51 E-value=2.3e+02 Score=23.92 Aligned_cols=32 Identities=13% Similarity=0.107 Sum_probs=24.5
Q ss_pred CCeeEEeec-CCCHHHHHHHHHhcCCCceEEeecc
Q 021693 152 GLVRSIGIS-NYDIFLTRDCLAYSKVKPVVNQFET 185 (309)
Q Consensus 152 Gkir~iGvs-~~~~~~l~~~~~~~~~~~~~~q~~~ 185 (309)
+.++.+||. |-+++.+.++.+..+ ++++|+.-
T Consensus 51 ~~~~~VgVf~~~~~~~i~~~~~~~~--~d~vQLHG 83 (207)
T PRK13958 51 NHIDKVCVVVNPDLTTIEHILSNTS--INTIQLHG 83 (207)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHhCC--CCEEEECC
Confidence 568889996 778888888887664 47888864
No 125
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=31.26 E-value=2.6e+02 Score=26.64 Aligned_cols=111 Identities=18% Similarity=0.128 Sum_probs=65.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCC-ccEEEEecCCC-CCcchHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCC
Q 021693 46 DYRNEAEVGEALAEAFSTGLVKR-EDLFITTKLWN-SDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSA 123 (309)
Q Consensus 46 ~YgsE~~lG~~l~~~~~~~~~~R-~~~~i~tK~~~-~~~~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~ 123 (309)
.||.+..+-++|.+..++. ++ +-++|.|=+.. .-.+.+..-+++.-++.+ +.++.+|.|+......
T Consensus 98 V~Gg~~~L~~aI~~~~~~~--~p~~~I~V~~tC~~~liGdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~~~------- 165 (443)
T TIGR01862 98 VFGGEKKLKKLIHEAFTEF--PLIKAISVYATCPTGLIGDDIEAVAKEVSKEIG---KDVVAVNCPGFAGVSQ------- 165 (443)
T ss_pred eeCcHHHHHHHHHHHHHhC--CccceEEEECCChHHHhccCHHHHHHHHHHhcC---CCEEEEecCCccCCcc-------
Confidence 5788888899998877655 44 55666665322 112555555555445554 6899999887631000
Q ss_pred CCcCCccccccCCcHHHHHHH-HHHHH--------HCCCeeEEeecCC--CHHHHHHHHHhcCCCce
Q 021693 124 LDADGVLEIDTTISLETTWHA-MEDLV--------SMGLVRSIGISNY--DIFLTRDCLAYSKVKPV 179 (309)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~-L~~l~--------~~Gkir~iGvs~~--~~~~l~~~~~~~~~~~~ 179 (309)
......+.++ ++++. +.++|--||-.++ +.+.+.++++..++++.
T Consensus 166 -----------~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v~ 221 (443)
T TIGR01862 166 -----------SKGHHIANIAVINDKVGTREKEITTEYDVNIIGEYNIGGDAWVMRIYLEEMGIQVV 221 (443)
T ss_pred -----------chHHHHHHHHHHHHHhCCCCcccCCCCeEEEEccCcCcccHHHHHHHHHHcCCeEE
Confidence 1112233333 23343 2467888885554 34478888888887654
No 126
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=30.75 E-value=3.4e+02 Score=23.20 Aligned_cols=66 Identities=17% Similarity=0.256 Sum_probs=39.4
Q ss_pred CcEEec-CCCCC--CHHHHHHHHHHHHhcCCCCCccEEEEecCCCC--C-------cchHHHHHHHHHHhhCCCceeEEE
Q 021693 38 YRHIDC-AADYR--NEAEVGEALAEAFSTGLVKREDLFITTKLWNS--D-------HGHVLEACKDSLKKLQLDYLDLYL 105 (309)
Q Consensus 38 in~~DT-A~~Yg--sE~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~--~-------~~~i~~~ve~SL~~L~~d~iDl~~ 105 (309)
.|.+.. +..|+ +.+.+.++.++ ..+++..+-|++.. + .+.+.+.+-+.++-|| +.+..++
T Consensus 19 F~~VEvn~TFY~~P~~~t~~~W~~~-------~p~~F~F~vK~~~~iTH~~~l~~~~~~~~~~F~~~~~~L~-~klg~iL 90 (230)
T PF01904_consen 19 FNTVEVNSTFYRIPSPETVARWREQ-------TPEGFRFSVKAPQLITHERRLRDCAEELWRRFLEALEPLG-EKLGPIL 90 (230)
T ss_dssp -SEEEE-HHCCSSS-HHHHHHHHCT-------S-TT-EEEEE--CCCCCCCHCGSSHHHHHHHHHHHCHHHH-T-EEEEE
T ss_pred CCeEEECcccCCCCCHHHHHHHHhh-------CCCCeEEEEeccHHheecccccccHHHHHHHHHHHHHHHh-hcceEEE
Confidence 444443 34677 68888888776 56789999998532 1 1455355555999999 8999999
Q ss_pred eecCCC
Q 021693 106 VHFPVA 111 (309)
Q Consensus 106 lH~p~~ 111 (309)
+.-|..
T Consensus 91 ~Q~Pps 96 (230)
T PF01904_consen 91 FQFPPS 96 (230)
T ss_dssp EE--TT
T ss_pred EEcCCC
Confidence 998753
No 127
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=30.72 E-value=48 Score=25.92 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=19.2
Q ss_pred hHHHHHHHHcCCeEEEeccCC
Q 021693 192 DSLVKFCQKHGICVTAHTPLG 212 (309)
Q Consensus 192 ~~ll~~~~~~gi~v~a~~pl~ 212 (309)
.++++.|+++||.|++|-.+.
T Consensus 47 ge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 47 GEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHHCCCEEEEEEeee
Confidence 689999999999999998776
No 128
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=30.62 E-value=4.9e+02 Score=24.99 Aligned_cols=114 Identities=13% Similarity=0.005 Sum_probs=66.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCcc-EEEEecCCC-CCcchHHHHHHHHHHhhCC-----CceeEEEeecCCCCCCCCC
Q 021693 45 ADYRNEAEVGEALAEAFSTGLVKRED-LFITTKLWN-SDHGHVLEACKDSLKKLQL-----DYLDLYLVHFPVATKHTGV 117 (309)
Q Consensus 45 ~~YgsE~~lG~~l~~~~~~~~~~R~~-~~i~tK~~~-~~~~~i~~~ve~SL~~L~~-----d~iDl~~lH~p~~~~~~~~ 117 (309)
-.||.|..+-++|+...++. ++.+ ++|.|=+.. .-.+.+..-+++.-++++. -.+.++.+|.|+.....
T Consensus 72 ~VfGg~~~L~~ai~~~~~~~--~~p~~i~v~ttc~~eiiGDDi~~v~~~~~~~~~~~~~p~~~~~ii~v~tpgF~gs~-- 147 (461)
T TIGR02931 72 AVFGALDRVEEAVDVLLTRY--PDVKVVPIITTCSTEIIGDDVDGLISKLNEELLKEKFPDREVHLIPIHTPSFVGSM-- 147 (461)
T ss_pred eEECcHHHHHHHHHHHHHhc--CCCCEEEEECCchHHhhhcCHHHHHHHHHhhhcccccCCCCCeEEEeeCCCCCCcH--
Confidence 35788888889998876654 3334 456654322 2236666666666555531 13678999988773210
Q ss_pred CCCCCCCCcCCccccccCCcHHHHHHHHHH-HH----HCCCeeEEeecC--CCHHHHHHHHHhcCCCce
Q 021693 118 GTTDSALDADGVLEIDTTISLETTWHAMED-LV----SMGLVRSIGISN--YDIFLTRDCLAYSKVKPV 179 (309)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-l~----~~Gkir~iGvs~--~~~~~l~~~~~~~~~~~~ 179 (309)
......+++++-+ +. .+++|--||-.+ -+...+.++++..++++.
T Consensus 148 -----------------~~Gy~~a~~ali~~~~~~~~~~~~VNlig~~~~~~D~~elk~lL~~~Gl~v~ 199 (461)
T TIGR02931 148 -----------------ITGYDVAVHDFVKHFAKKDKPNDKINLITGWVNPGDVKELKHLLEEMDIEAN 199 (461)
T ss_pred -----------------HHHHHHHHHHHHHHHccCCCCCCcEEEECCCCChhhHHHHHHHHHHcCCceE
Confidence 1123334433332 22 246688888543 245578888888887654
No 129
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=30.41 E-value=4.9e+02 Score=24.85 Aligned_cols=74 Identities=15% Similarity=0.162 Sum_probs=44.7
Q ss_pred HHHHHHHHHHCCC-eeEEeecCCCHHHHHHHHHhcCCCceEE--e---eccCCCCCchHHHHHHHHcCCeEEEeccCCCC
Q 021693 141 TWHAMEDLVSMGL-VRSIGISNYDIFLTRDCLAYSKVKPVVN--Q---FETHPYFQRDSLVKFCQKHGICVTAHTPLGGA 214 (309)
Q Consensus 141 ~~~~L~~l~~~Gk-ir~iGvs~~~~~~l~~~~~~~~~~~~~~--q---~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~G 214 (309)
+....+.|+++|. ++++++.+-....++++.+..+.++..+ . .......+-+++...|++.||.+.+=..-+-|
T Consensus 144 v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG 223 (428)
T KOG1549|consen 144 VLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAVG 223 (428)
T ss_pred hhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCccccccHHHHHHHhCcCCcEEEeehhhhcC
Confidence 4456667778886 7788888665555555555543222221 1 11122233388999999999987775555444
No 130
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.29 E-value=45 Score=24.81 Aligned_cols=59 Identities=17% Similarity=0.133 Sum_probs=39.3
Q ss_pred HHHHHHcCCcEEecCCCCC--CHHHHHHHHHHHHhcCCCCCccEEEEecC-CCCC-------------------cchHHH
Q 021693 30 IINAIKIGYRHIDCAADYR--NEAEVGEALAEAFSTGLVKREDLFITTKL-WNSD-------------------HGHVLE 87 (309)
Q Consensus 30 l~~A~~~Gin~~DTA~~Yg--sE~~lG~~l~~~~~~~~~~R~~~~i~tK~-~~~~-------------------~~~i~~ 87 (309)
---.++.|.-|+-|-..|. .|-.+---|-+ ..+++.+++|+ |... ...++.
T Consensus 26 YMpfl~nGglFVpTnk~y~iG~evfl~l~lld-------~pekl~vagkVaWitP~gt~sr~~GiGv~f~d~e~g~~vr~ 98 (117)
T COG3215 26 YMPFLENGGLFVPTNKVYSIGEEVFLLLELLD-------FPEKLPVAGKVAWITPVGTQSRPAGIGVQFTDGENGLKVRN 98 (117)
T ss_pred HhHHHhcCcEEcccCCccccchhhhhhhhhcC-------chhhccccceEEEEccCCCCCCCCceeeeccCCCchhhHHH
Confidence 3344699999999999994 55554433322 35688999997 3211 047889
Q ss_pred HHHHHHHh
Q 021693 88 ACKDSLKK 95 (309)
Q Consensus 88 ~ve~SL~~ 95 (309)
.||.-|-.
T Consensus 99 ~IE~~Lg~ 106 (117)
T COG3215 99 QIETLLGG 106 (117)
T ss_pred HHHHHHHh
Confidence 99887753
No 131
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=30.23 E-value=2.9e+02 Score=27.93 Aligned_cols=110 Identities=12% Similarity=0.041 Sum_probs=70.6
Q ss_pred HHHHHCCCeeEEeecCCCHHHHHHHHHhcC--CCceEEeeccCCCC-----CchHHHHHHHHcCCeEEEeccCCCCCCCC
Q 021693 146 EDLVSMGLVRSIGISNYDIFLTRDCLAYSK--VKPVVNQFETHPYF-----QRDSLVKFCQKHGICVTAHTPLGGAVANT 218 (309)
Q Consensus 146 ~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~--~~~~~~q~~~~~~~-----~~~~ll~~~~~~gi~v~a~~pl~~G~l~~ 218 (309)
+.+....++..+-=++.+.+....+.+... ++ .+ .+ ++-.| ++..+.++|.+.++-++.-++-
T Consensus 148 ~~~~~~~~~~~~~QTT~~~~~~~~~~~~l~~~~~-~~-~~-~~tiC~at~~Rq~a~~~la~~~d~~~vvGg~~------- 217 (647)
T PRK00087 148 EKLPFDKKICVVSQTTEKQENFEKVLKELKKKGK-EV-KV-FNTICNATEVRQEAAEKLAKKVDVMIVVGGKN------- 217 (647)
T ss_pred hhCCCCCCEEEEEcCCCcHHHHHHHHHHHHHhCC-Cc-cc-CCCcchhhhhHHHHHHHHHhhCCEEEEECCCC-------
Confidence 334334666666667777776665555432 21 11 11 23222 2367888898888777654432
Q ss_pred cccCCccCCCcHHHHHHHHHcCC------CHHHHHHHHHhcCC-cEEecCCCChhHHHHhh
Q 021693 219 EWFGTVSCLDDPVLKGLAEKYKR------TVAQTVLRWGIQRN-TAVIPKTSKLERLEENF 272 (309)
Q Consensus 219 ~~~~~~~~~~~~~l~~ia~~~~~------s~aq~al~~~l~~~-~~vi~g~~~~~~l~~n~ 272 (309)
.-.-..|.++|++.+. ++.++.-.|.-... +.+..|+|+|+.+-+.+
T Consensus 218 -------SsNt~~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~~vgitagaStP~~~i~~v 271 (647)
T PRK00087 218 -------SSNTTKLYEICKSNCTNTIHIENAGELPEEWFKGVKIIGVTAGASTPDWIIEEV 271 (647)
T ss_pred -------CccHHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEeccCCCHHHHHHH
Confidence 2233689999998873 77888889987665 67889999999775554
No 132
>PRK03995 hypothetical protein; Provisional
Probab=29.85 E-value=2.2e+02 Score=25.28 Aligned_cols=82 Identities=17% Similarity=0.135 Sum_probs=53.4
Q ss_pred CcccccceeccccChhhHHHHHHHHHHcCCcEEecCCCCC----CHHHHHHHHHHHHhcCCCCCccEEEEecCCCCCcch
Q 021693 9 FKMPIIGLGVWRMDESNIRDLIINAIKIGYRHIDCAADYR----NEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGH 84 (309)
Q Consensus 9 ~~vs~lg~G~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg----sE~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~ 84 (309)
-..+.||||+....... -+.|++.++.+=...+.|. ++.++-+++.. +. ..-+.++|--| ..+..
T Consensus 180 ~~~~~iGiGGgHYapr~----T~~~l~~~~~~GHi~pky~l~~~~~~~i~~a~~k---s~-~~~~~~~id~K---~~k~~ 248 (267)
T PRK03995 180 KFKPAIGIGGGHYAPKF----TKLALESEYCFGHIIPKYALDHLSEEVLIQAIEK---ST-PEIDRIVIDWK---GVKSE 248 (267)
T ss_pred CCCEEEEECCCCccHHH----HHHHhhCCeeEEeEccccchhcCCHHHHHHHHHh---cc-CCCCEEEEecC---CCCHH
Confidence 34678899987655433 3677788888888888885 45666666665 21 11223344344 33467
Q ss_pred HHHHHHHHHHhhCCCce
Q 021693 85 VLEACKDSLKKLQLDYL 101 (309)
Q Consensus 85 i~~~ve~SL~~L~~d~i 101 (309)
.++.+.+.|+.||.+.+
T Consensus 249 ~r~~i~~~le~~gi~v~ 265 (267)
T PRK03995 249 DRERIIEFLEELGIEVE 265 (267)
T ss_pred HHHHHHHHHHHCCCeEE
Confidence 88999999999987643
No 133
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=29.76 E-value=3.7e+02 Score=25.21 Aligned_cols=69 Identities=9% Similarity=-0.005 Sum_probs=49.9
Q ss_pred HHHHHHHHHHCCCee-EEeecCCCHHHHHHHHHhcCCCceEEeeccCCCC---CchHHHHHHHHcCCeEEEeccC
Q 021693 141 TWHAMEDLVSMGLVR-SIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYF---QRDSLVKFCQKHGICVTAHTPL 211 (309)
Q Consensus 141 ~~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~ll~~~~~~gi~v~a~~pl 211 (309)
-++.+.+|++.-.+. ..|=|.++...+..+++... +.++|......- .-..+...|+.+|+.++.++..
T Consensus 245 d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a--~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~ 317 (404)
T PRK15072 245 NQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQL--IDYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPT 317 (404)
T ss_pred CHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCC--CCEEecCccccCcHHHHHHHHHHHHHcCCceeeccCc
Confidence 357788888876655 66677788888988888754 367776655432 2367889999999999877553
No 134
>COG0327 Uncharacterized conserved protein [Function unknown]
Probab=29.70 E-value=1e+02 Score=27.03 Aligned_cols=36 Identities=28% Similarity=0.275 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHcCCcEEecCCCCCCHHHHHHHHHHHH
Q 021693 25 NIRDLIINAIKIGYRHIDCAADYRNEAEVGEALAEAF 61 (309)
Q Consensus 25 ~~~~~l~~A~~~Gin~~DTA~~YgsE~~lG~~l~~~~ 61 (309)
-.......|.+.|+++||. .+|.+|+..=+.+.+.+
T Consensus 198 ~~~~~~~~a~e~gi~~i~~-gH~~tE~~g~~~l~~~l 233 (250)
T COG0327 198 LSHHTAHDARELGLSVIDA-GHYATERPGLKALAELL 233 (250)
T ss_pred CcHHHHHHHHHCCCeEEec-CchHHHHHHHHHHHHHH
Confidence 3456778889999999995 46777765555555543
No 135
>PLN02775 Probable dihydrodipicolinate reductase
Probab=29.63 E-value=4.1e+02 Score=23.85 Aligned_cols=72 Identities=17% Similarity=0.083 Sum_probs=50.6
Q ss_pred HHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCCeeEEeecCCCHHHH
Q 021693 88 ACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGISNYDIFLT 167 (309)
Q Consensus 88 ~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l 167 (309)
.+++.|..+..+|.|++.+..- ..+-+.+.++.+.+.|+---+|.+.|+.+++
T Consensus 67 dl~~~l~~~~~~~~~~VvIDFT---------------------------~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l 119 (286)
T PLN02775 67 EREAVLSSVKAEYPNLIVVDYT---------------------------LPDAVNDNAELYCKNGLPFVMGTTGGDRDRL 119 (286)
T ss_pred cHHHHHHHhhccCCCEEEEECC---------------------------ChHHHHHHHHHHHHCCCCEEEECCCCCHHHH
Confidence 3455565555568887776632 2445778888899999999999999999998
Q ss_pred HHHHHhcCCCceEEeeccCC
Q 021693 168 RDCLAYSKVKPVVNQFETHP 187 (309)
Q Consensus 168 ~~~~~~~~~~~~~~q~~~~~ 187 (309)
+++.+...+ |.++--|++.
T Consensus 120 ~~~~~~~~i-~vv~apNfSi 138 (286)
T PLN02775 120 LKDVEESGV-YAVIAPQMGK 138 (286)
T ss_pred HHHHhcCCc-cEEEECcccH
Confidence 877665444 4555555553
No 136
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=29.08 E-value=3.7e+02 Score=23.07 Aligned_cols=141 Identities=13% Similarity=0.060 Sum_probs=73.6
Q ss_pred eecCCCCcccccceeccccChhhHHHHHHHHHHcCCcEEecCCCCCC-----HHHHHHHHHHHHhcCCCCCccEEEEecC
Q 021693 3 ITLNNGFKMPIIGLGVWRMDESNIRDLIINAIKIGYRHIDCAADYRN-----EAEVGEALAEAFSTGLVKREDLFITTKL 77 (309)
Q Consensus 3 ~~l~tg~~vs~lg~G~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Ygs-----E~~lG~~l~~~~~~~~~~R~~~~i~tK~ 77 (309)
.+|+.|.+.+..- ++.++..++++...+.|+..++....=.. -.-.-+.++.+.+.+ +.-.+...++.
T Consensus 3 ~tlRDG~q~~~~~-----~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~--~~~~~~~l~~~ 75 (265)
T cd03174 3 TTLRDGLQSEGAT-----FSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLV--PNVKLQALVRN 75 (265)
T ss_pred CCCCCcccCCCCC-----CCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhcc--CCcEEEEEccC
Confidence 5678888776533 45788999999999999999998643211 011223333322222 23334333332
Q ss_pred CCCCcchHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCCeeEE
Q 021693 78 WNSDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSI 157 (309)
Q Consensus 78 ~~~~~~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~i 157 (309)
. .+.++...+ .|.+.+-++.-=+ +. + ... ....+.....+.+.++++.+++.|.--.+
T Consensus 76 ~-------~~~i~~a~~-~g~~~i~i~~~~s-~~--~---------~~~--~~~~~~~~~~~~~~~~i~~a~~~G~~v~~ 133 (265)
T cd03174 76 R-------EKGIERALE-AGVDEVRIFDSAS-ET--H---------SRK--NLNKSREEDLENAEEAIEAAKEAGLEVEG 133 (265)
T ss_pred c-------hhhHHHHHh-CCcCEEEEEEecC-HH--H---------HHH--HhCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 1 333444333 3555555543111 00 0 000 00001123467788999999999986666
Q ss_pred eec---C--CCHHHHHHHHH
Q 021693 158 GIS---N--YDIFLTRDCLA 172 (309)
Q Consensus 158 Gvs---~--~~~~~l~~~~~ 172 (309)
.++ . ++++.+.++.+
T Consensus 134 ~~~~~~~~~~~~~~l~~~~~ 153 (265)
T cd03174 134 SLEDAFGCKTDPEYVLEVAK 153 (265)
T ss_pred EEEeecCCCCCHHHHHHHHH
Confidence 553 3 45555444444
No 137
>PF06819 Arc_PepC: Archaeal Peptidase A24 C-terminal Domain; InterPro: IPR009639 This region is of unknown function found at the C terminus of some archael proteins that have multiple transmembrane domains and are predicted to be aspartic peptidases belonging to the MEROPS peptidase subfamily A24A (type 4 prepilin peptidase 1.
Probab=28.59 E-value=1.4e+02 Score=22.54 Aligned_cols=69 Identities=16% Similarity=0.037 Sum_probs=39.0
Q ss_pred CCCCCccEEEEecCCCCCcchHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHH
Q 021693 64 GLVKREDLFITTKLWNSDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWH 143 (309)
Q Consensus 64 ~~~~R~~~~i~tK~~~~~~~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (309)
|-+.|+-+++-.---..+...+-..+...++.-....+-=-.+-.|+. ....++.++
T Consensus 37 gdIL~e~I~~k~~~v~~d~~~~~~r~k~~l~~~~~~~l~g~~i~~~~~-----------------------EGLs~E~IE 93 (110)
T PF06819_consen 37 GDILGEIIYEKDDGVYRDRSSFFKRFKFALKTEDGSALTGEKIISTDA-----------------------EGLSKEDIE 93 (110)
T ss_pred cceehheEEEeCCcEEEecccHHHHHHHHHHhcccccccCCeEEeccc-----------------------cCCCHHHHH
Confidence 334555555433222233456666666666655444431011223332 445678999
Q ss_pred HHHHHHHCCCee
Q 021693 144 AMEDLVSMGLVR 155 (309)
Q Consensus 144 ~L~~l~~~Gkir 155 (309)
.|.+|+++||+.
T Consensus 94 ~Lk~Lv~eGKi~ 105 (110)
T PF06819_consen 94 KLKKLVEEGKIE 105 (110)
T ss_pred HHHHHHHcCCCc
Confidence 999999999975
No 138
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=28.56 E-value=85 Score=23.18 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=35.6
Q ss_pred cCCCHHHHHHHHHhcCCCceEEeeccCCC---CCchHHHHHHHHcCCeEEEeccCCCC
Q 021693 160 SNYDIFLTRDCLAYSKVKPVVNQFETHPY---FQRDSLVKFCQKHGICVTAHTPLGGA 214 (309)
Q Consensus 160 s~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~ll~~~~~~gi~v~a~~pl~~G 214 (309)
+.++...+.++++...+ +++|+..... ..-..+.++|+++|+.++..+. .++
T Consensus 3 ~~~~~~~~~~li~~~a~--d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~ 57 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAV--DIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESG 57 (111)
T ss_dssp TSSSHHHHHHHHHTTSC--SEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSH
T ss_pred CCCCHHHHHHHHHcCCC--CEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCc
Confidence 45677778888876543 5667665432 1226789999999999999996 554
No 139
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=28.55 E-value=4.4e+02 Score=23.72 Aligned_cols=151 Identities=20% Similarity=0.172 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHcCCcEEecCCCCCC---HHHHHHHHHHHHh--cC-CCCCc-cEEEEecCCCCCcchHHHHHHHHHHhhC
Q 021693 25 NIRDLIINAIKIGYRHIDCAADYRN---EAEVGEALAEAFS--TG-LVKRE-DLFITTKLWNSDHGHVLEACKDSLKKLQ 97 (309)
Q Consensus 25 ~~~~~l~~A~~~Gin~~DTA~~Ygs---E~~lG~~l~~~~~--~~-~~~R~-~~~i~tK~~~~~~~~i~~~ve~SL~~L~ 97 (309)
...++++++.+ |.....+...|+. ...+-+++.+++. .+ ....+ .+++++ .....+...+.-+.
T Consensus 19 ~~~~~~~~~~~-~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~--------G~~~~~~~~~~~~~ 89 (363)
T PF00155_consen 19 PPPAAIKAAIR-GAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTS--------GAQAALFLLLRLLK 89 (363)
T ss_dssp HHHHHHHHHHH-HHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEES--------HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHH-HhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEec--------ccccchhhhhhccc
Confidence 34445555555 4444555557763 3444455554433 11 01345 566554 34444444455553
Q ss_pred CCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCC-CeeEEeec-----CCCHHHHHHHH
Q 021693 98 LDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMG-LVRSIGIS-----NYDIFLTRDCL 171 (309)
Q Consensus 98 ~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-kir~iGvs-----~~~~~~l~~~~ 171 (309)
.+.-|-+++..|... ...+. ++..| ++..+-+. ..+.+.+++.+
T Consensus 90 ~~~~~~vlv~~P~y~---------------------------~~~~~---~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l 139 (363)
T PF00155_consen 90 INPGDTVLVPDPCYP---------------------------SYIEA---ARLLGAEVIPVPLDSENDFHLDPEALEEAL 139 (363)
T ss_dssp SSTTSEEEEEESSST---------------------------HHHHH---HHHTTSEEEEEEEEETTTTEETHHHHHHHH
T ss_pred ccccccceecCCccc---------------------------ccccc---ccccCceeeecccccccccccccccccccc
Confidence 344577888877652 12222 22233 35555544 55777888877
Q ss_pred Hhc-----CCCceEEeeccCCCCC---c---hHHHHHHHHcCCeEEEeccCCCC
Q 021693 172 AYS-----KVKPVVNQFETHPYFQ---R---DSLVKFCQKHGICVTAHTPLGGA 214 (309)
Q Consensus 172 ~~~-----~~~~~~~q~~~~~~~~---~---~~ll~~~~~~gi~v~a~~pl~~G 214 (309)
+.. +....++-.+.||.-. . .+++++|+++|+-++.=......
T Consensus 140 ~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~ 193 (363)
T PF00155_consen 140 DELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDL 193 (363)
T ss_dssp HTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTG
T ss_pred ccccccccccceeeecccccccccccccccccchhhhhcccccceeeeeceecc
Confidence 764 1223344444443221 1 56778899999998875544443
No 140
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=28.53 E-value=1.5e+02 Score=22.74 Aligned_cols=67 Identities=12% Similarity=0.102 Sum_probs=46.3
Q ss_pred CCcHHHHHHHHHHHHHCCCeeEEeecCCCHHHHHHHHHhcCCCceEEeeccCCCCCchHHHHHHHHcCCeEEE
Q 021693 135 TISLETTWHAMEDLVSMGLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVTA 207 (309)
Q Consensus 135 ~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a 207 (309)
....+++++.+....+.|+|. ....+..++++......+++--..+|..--..+...|.+++|+++-
T Consensus 9 ~~~~~k~l~~l~~a~~~~ki~------~G~~e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~ 75 (116)
T COG1358 9 EMLEQKALSLLGKASRAGKLK------KGTNEVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVY 75 (116)
T ss_pred HHHHHHHHHHHHHHHhcCCch------hhHHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 344567888888889999765 3556777888887666565544444322225688899999999764
No 141
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=28.38 E-value=45 Score=28.95 Aligned_cols=32 Identities=34% Similarity=0.264 Sum_probs=20.1
Q ss_pred HHHHHHHHcCCcEEecCCCCCCHHHHHHHHHHH
Q 021693 28 DLIINAIKIGYRHIDCAADYRNEAEVGEALAEA 60 (309)
Q Consensus 28 ~~l~~A~~~Gin~~DTA~~YgsE~~lG~~l~~~ 60 (309)
.....|.+.|+++||.. +|.+|...=+.|.++
T Consensus 203 h~~~~a~~~g~~lI~~g-H~~sE~~~~~~l~~~ 234 (241)
T PF01784_consen 203 HDAQDAKENGINLIDAG-HYASERPGMEALAEW 234 (241)
T ss_dssp HHHHHHHHCTSEEEE---HHHHGGHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEcC-CHHHHHHHHHHHHHH
Confidence 34566788899999865 677776555555543
No 142
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=27.76 E-value=4.3e+02 Score=23.31 Aligned_cols=151 Identities=15% Similarity=0.172 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCCeeEEeecCCC
Q 021693 84 HVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGISNYD 163 (309)
Q Consensus 84 ~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~ 163 (309)
.+++-+.+-++.++ +++..|=++.+-.... . ..-+.+..+.++.+++.|..-..=+=-++
T Consensus 38 ~~~~f~~~ii~~l~-~~v~~vK~g~~lf~~~------------------G-~~gi~~l~~~~~~~~~~g~~VilD~K~~D 97 (261)
T TIGR02127 38 GLQAFCLRIIDATA-EYAAVVKPQVAFFERF------------------G-SEGFKALEEVIAHARSLGLPVLADVKRGD 97 (261)
T ss_pred HHHHHHHHHHHhcC-CcceEEecCHHHHHhc------------------C-HHHHHHHHHHHHHHHHCCCeEEEEeeccC
Confidence 44455677778887 7888877776543210 0 11123344555666677764444333344
Q ss_pred HH-HH----HHHHHhcCCCceEEeeccCCCCCc---hHHHHHHHHcC--CeEEEeccCCCCCCCCcccCCccCCCcHHHH
Q 021693 164 IF-LT----RDCLAYSKVKPVVNQFETHPYFQR---DSLVKFCQKHG--ICVTAHTPLGGAVANTEWFGTVSCLDDPVLK 233 (309)
Q Consensus 164 ~~-~l----~~~~~~~~~~~~~~q~~~~~~~~~---~~ll~~~~~~g--i~v~a~~pl~~G~l~~~~~~~~~~~~~~~l~ 233 (309)
.. .+ +.+.+..+. ..+..|++... ++.++.++++| +.|++-....++ ..++
T Consensus 98 IpnTv~~~a~a~~~~~g~----D~vTvh~~~G~d~l~~~~~~~~~~~~~v~VlvlTSnp~~---------------~~lq 158 (261)
T TIGR02127 98 IGSTASAYAKAWLGHLHA----DALTVSPYLGLDSLRPFLEYARANGAGIFVLVKTSNPGG---------------ADLQ 158 (261)
T ss_pred hHHHHHHHHHHHHhhcCC----CEEEECCcCCHHHHHHHHHHHhhcCCEEEEEEeCCCCCH---------------HHHh
Confidence 33 22 222212222 33444555544 45566666554 444443333111 2233
Q ss_pred HHHHHcCCCHHHHHHHHHhc---C----C-cEEecCCCChhHHHHhhc
Q 021693 234 GLAEKYKRTVAQTVLRWGIQ---R----N-TAVIPKTSKLERLEENFK 273 (309)
Q Consensus 234 ~ia~~~~~s~aq~al~~~l~---~----~-~~vi~g~~~~~~l~~n~~ 273 (309)
.+....+.++.+..++++.. . | ..+++|+++++++++.=+
T Consensus 159 ~~~~~~~~~~~~~V~~~a~~~~~~~~~~g~~GvV~gAT~p~e~~~iR~ 206 (261)
T TIGR02127 159 DLRVSDGRTVYEEVAELAGELNESPGDCSSVGAVVGATSPGDLLRLRI 206 (261)
T ss_pred hhhccCCCCHHHHHHHHHHHhccccCcCCceEEEECCCCHHHHHHHHH
Confidence 32222233555555554442 1 3 678999998876655433
No 143
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=27.64 E-value=2.8e+02 Score=25.49 Aligned_cols=67 Identities=13% Similarity=0.044 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHCCCeeEEeecCCCHHHHHHHHHhcCCCceEEeeccCCCCCchHHHHHHHHcCCeE
Q 021693 139 ETTWHAMEDLVSMGLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICV 205 (309)
Q Consensus 139 ~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v 205 (309)
.+..+++.+++++=.|=-++=--|+...+.++.+.+-....+|..++....+-+++++.|+++|+++
T Consensus 60 ~e~A~A~~~Ik~~~~vPLVaDiHf~~rla~~~~~~g~~k~RINPGNig~~~~v~~vVe~Ak~~g~pi 126 (361)
T COG0821 60 MEAAEALKEIKQRLNVPLVADIHFDYRLALEAAECGVDKVRINPGNIGFKDRVREVVEAAKDKGIPI 126 (361)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeeccHHHHHHhhhcCcceEEECCcccCcHHHHHHHHHHHHHcCCCE
Confidence 3677888888888777777666666554445444431122233333332222378999999999876
No 144
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=27.33 E-value=4.3e+02 Score=23.21 Aligned_cols=38 Identities=16% Similarity=0.138 Sum_probs=30.9
Q ss_pred eecCCCCcccccceeccccChhhHHHHHHHHHHcCCcEEecCC
Q 021693 3 ITLNNGFKMPIIGLGVWRMDESNIRDLIINAIKIGYRHIDCAA 45 (309)
Q Consensus 3 ~~l~tg~~vs~lg~G~~~~~~~~~~~~l~~A~~~Gin~~DTA~ 45 (309)
.+|+.|.+.+.+.| +.++..++++.-.+.||..++...
T Consensus 6 ~TLRDG~Q~~~~~~-----s~~~k~~i~~~L~~~Gv~~IEvG~ 43 (262)
T cd07948 6 STLREGEQFANAFF-----DTEDKIEIAKALDAFGVDYIELTS 43 (262)
T ss_pred CCCCCcCcCCCCCC-----CHHHHHHHHHHHHHcCCCEEEEEC
Confidence 46888888876544 467888999999999999999863
No 145
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=27.26 E-value=1.2e+02 Score=25.59 Aligned_cols=16 Identities=31% Similarity=0.598 Sum_probs=7.9
Q ss_pred hHHHHHHHHcCCeEEE
Q 021693 192 DSLVKFCQKHGICVTA 207 (309)
Q Consensus 192 ~~ll~~~~~~gi~v~a 207 (309)
.++..||++||+.++.
T Consensus 175 ~~~~~fa~~h~l~~it 190 (203)
T COG0108 175 PELEEFAKEHGLPVIT 190 (203)
T ss_pred HHHHHHHHHcCCcEEE
Confidence 3455555555555443
No 146
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=27.15 E-value=4.3e+02 Score=23.19 Aligned_cols=95 Identities=20% Similarity=0.274 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCC-eeEEeecCCC
Q 021693 85 VLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGL-VRSIGISNYD 163 (309)
Q Consensus 85 i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk-ir~iGvs~~~ 163 (309)
-+..+=+.|.++|++.|.+-. |.. . .+.+++.+.+.+.++ .+-.+....+
T Consensus 23 ~k~~i~~~L~~~Gv~~IEvG~---P~~-----------------------~---~~~~~~~~~l~~~~~~~~v~~~~r~~ 73 (262)
T cd07948 23 DKIEIAKALDAFGVDYIELTS---PAA-----------------------S---PQSRADCEAIAKLGLKAKILTHIRCH 73 (262)
T ss_pred HHHHHHHHHHHcCCCEEEEEC---CCC-----------------------C---HHHHHHHHHHHhCCCCCcEEEEecCC
Confidence 344555668999999888863 432 1 123344444444333 3335555667
Q ss_pred HHHHHHHHHhcCCCceEEeeccCCC------CC--c------hHHHHHHHHcCCeEEEec
Q 021693 164 IFLTRDCLAYSKVKPVVNQFETHPY------FQ--R------DSLVKFCQKHGICVTAHT 209 (309)
Q Consensus 164 ~~~l~~~~~~~~~~~~~~q~~~~~~------~~--~------~~ll~~~~~~gi~v~a~~ 209 (309)
...++.+.+. +++..-+-++.|.. .. + .+++.+++++|+.+...-
T Consensus 74 ~~di~~a~~~-g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 74 MDDARIAVET-GVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred HHHHHHHHHc-CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 7778887765 44333333332211 11 1 356788999998766554
No 147
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.14 E-value=5e+02 Score=24.01 Aligned_cols=79 Identities=20% Similarity=0.179 Sum_probs=50.8
Q ss_pred CcHHHHHHHHHHHHHCC-C---eeEEeec--CCCHHHHHHHHHhcC-CCceEEeeccCCCCCc----------hHHHHHH
Q 021693 136 ISLETTWHAMEDLVSMG-L---VRSIGIS--NYDIFLTRDCLAYSK-VKPVVNQFETHPYFQR----------DSLVKFC 198 (309)
Q Consensus 136 ~~~~~~~~~L~~l~~~G-k---ir~iGvs--~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~----------~~ll~~~ 198 (309)
.++++++++++++.+.+ + ++++=+. |-+.++++++.+... .+..++-++||++... ....+.+
T Consensus 243 ~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~~~~ky~~ps~e~l~~f~~~L 322 (356)
T PRK14455 243 YPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPVPERDYVRTPKEDIFAFEDTL 322 (356)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcCCCCCCcCCCHHHHHHHHHHH
Confidence 45789999999987643 2 3344343 444566666665542 3456777888875421 3456668
Q ss_pred HHcCCeEEEeccCCCC
Q 021693 199 QKHGICVTAHTPLGGA 214 (309)
Q Consensus 199 ~~~gi~v~a~~pl~~G 214 (309)
+++|+.+......+.-
T Consensus 323 ~~~gi~v~ir~~~g~d 338 (356)
T PRK14455 323 KKNGVNCTIRREHGTD 338 (356)
T ss_pred HHCCCcEEEeCCCCcc
Confidence 8999999887765543
No 148
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=27.12 E-value=3.9e+02 Score=22.66 Aligned_cols=94 Identities=12% Similarity=0.127 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCCeeEEeecCCC
Q 021693 84 HVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGISNYD 163 (309)
Q Consensus 84 ~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~ 163 (309)
..+..+-+.|.++|+++|.+- .|.. .....+.++.+.+.... .+-.+++...
T Consensus 14 ~~k~~i~~~L~~~Gv~~iEvg---~~~~-----------------------~~~~~~~v~~~~~~~~~--~~~~~~~~~~ 65 (237)
T PF00682_consen 14 EEKLEIAKALDEAGVDYIEVG---FPFA-----------------------SEDDFEQVRRLREALPN--ARLQALCRAN 65 (237)
T ss_dssp HHHHHHHHHHHHHTTSEEEEE---HCTS-----------------------SHHHHHHHHHHHHHHHS--SEEEEEEESC
T ss_pred HHHHHHHHHHHHhCCCEEEEc---cccc-----------------------CHHHHHHhhhhhhhhcc--cccceeeeeh
Confidence 345556667999999999997 2222 11123445555555555 4445566666
Q ss_pred HHHHHHHHH---hcCCCceEEeeccCCCC--------------CchHHHHHHHHcCCeE
Q 021693 164 IFLTRDCLA---YSKVKPVVNQFETHPYF--------------QRDSLVKFCQKHGICV 205 (309)
Q Consensus 164 ~~~l~~~~~---~~~~~~~~~q~~~~~~~--------------~~~~ll~~~~~~gi~v 205 (309)
...++..++ ..+.+...+-.+.|... .-...+.++++.|+.+
T Consensus 66 ~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 66 EEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 666666444 34454444444454311 1146789999999998
No 149
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=27.06 E-value=3.4e+02 Score=26.60 Aligned_cols=120 Identities=13% Similarity=0.086 Sum_probs=67.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCccEEEEecCCCC-CcchHHHHHHHHHHhhCC-CceeEEEeecCCCCCCCCCCCCC
Q 021693 44 AADYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNS-DHGHVLEACKDSLKKLQL-DYLDLYLVHFPVATKHTGVGTTD 121 (309)
Q Consensus 44 A~~YgsE~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~-~~~~i~~~ve~SL~~L~~-d~iDl~~lH~p~~~~~~~~~~~~ 121 (309)
+..||.+..+-++|....+.. +.+=++|+|=+... -.+.+..-+.+.-+.... +-+++..+|.|+.....
T Consensus 121 ~aVfGG~~~L~e~I~~~~~~y--~P~~I~V~tTC~~evIGDDi~a~i~~~~~~~~~p~~~pVi~v~TpgF~Gs~------ 192 (515)
T TIGR01286 121 AAVFGGLKNMVDGLQNCYALY--KPKMIAVSTTCMAEVIGDDLNAFIGNAKKEGFIPDDFPVPFAHTPSFVGSH------ 192 (515)
T ss_pred ceeeCcHHHHHHHHHHHHHhc--CCCEEEEeCCcHHHHhhccHHHHHHHHHHhcCCCCCCceEEeeCCCCcccH------
Confidence 346788888888888876654 44556677754321 236666666665555443 24689999999873110
Q ss_pred CCCCcCCccccccCCcHHHHHHHHHHHH-------HCCCeeEEe-ecCC--CHHHHHHHHHhcCCCceE
Q 021693 122 SALDADGVLEIDTTISLETTWHAMEDLV-------SMGLVRSIG-ISNY--DIFLTRDCLAYSKVKPVV 180 (309)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~-------~~Gkir~iG-vs~~--~~~~l~~~~~~~~~~~~~ 180 (309)
..-+ +.....+++.|..-+ ..++|--|| ...+ +...++++++..++++.+
T Consensus 193 -------~~Gy--d~a~~ail~~l~~~~~~~~~~~~~~~VNii~g~~~~~gd~~eikrlL~~~Gi~~~~ 252 (515)
T TIGR01286 193 -------ITGY--DNMFKGILEYFTKGSMDDKVVGSNGKINIIPGFETYIGNFREIKRILSLMGVGYTL 252 (515)
T ss_pred -------HHHH--HHHHHHHHHHHhhcccccccCCCCCeEEEECCCCCCchhHHHHHHHHHHcCCCeEE
Confidence 0000 112223333332211 236677774 4333 345788888888876554
No 150
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=27.02 E-value=1.9e+02 Score=23.44 Aligned_cols=67 Identities=15% Similarity=0.129 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHcCCcEEecCCCCCC-HHHHHHHHHHHHhcCCCCCccEEEEecCCCC---CcchHHHHHHHHHHhhCCC
Q 021693 25 NIRDLIINAIKIGYRHIDCAADYRN-EAEVGEALAEAFSTGLVKREDLFITTKLWNS---DHGHVLEACKDSLKKLQLD 99 (309)
Q Consensus 25 ~~~~~l~~A~~~Gin~~DTA~~Ygs-E~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~---~~~~i~~~ve~SL~~L~~d 99 (309)
...-.+++|-+.||.+|=.|..||- -..+-+.+.. . =++++.|.-... +...+.+.+++-|+..|.+
T Consensus 15 tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg-------~-lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~ 85 (186)
T COG1751 15 TLEIAVERAKELGIKHIVVASSTGYTALKALEMVEG-------D-LKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAK 85 (186)
T ss_pred HHHHHHHHHHhcCcceEEEEecccHHHHHHHHhccc-------C-ceEEEEEeecccccCCceecCHHHHHHHHHcCce
Confidence 3455667778889999999999982 2222222221 1 246666653322 2256788899999999864
No 151
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=27.01 E-value=3.6e+02 Score=22.29 Aligned_cols=101 Identities=13% Similarity=0.180 Sum_probs=51.9
Q ss_pred CCCcccccceeccccChhhHHHHHHHHHHcCCcEEecCCCCCC---HHHHHHHHHHHHhcCCCCCccEEEEecCCCCCc-
Q 021693 7 NGFKMPIIGLGVWRMDESNIRDLIINAIKIGYRHIDCAADYRN---EAEVGEALAEAFSTGLVKREDLFITTKLWNSDH- 82 (309)
Q Consensus 7 tg~~vs~lg~G~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Ygs---E~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~- 82 (309)
.|+++--+||++-..-+.+..+.|..- +.-+=.+|+.++... ++.+-.+++.+.+.. +.-.+++++-++....
T Consensus 32 l~~~~iNLGfsG~~~le~~~a~~ia~~-~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~h--P~tPIllv~~~~~~~~~ 108 (178)
T PF14606_consen 32 LGLDVINLGFSGNGKLEPEVADLIAEI-DADLIVLDCGPNMSPEEFRERLDGFVKTIREAH--PDTPILLVSPIPYPAGY 108 (178)
T ss_dssp HT-EEEEEE-TCCCS--HHHHHHHHHS---SEEEEEESHHCCTTTHHHHHHHHHHHHHTT---SSS-EEEEE----TTTT
T ss_pred cCCCeEeeeecCccccCHHHHHHHhcC-CCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEecCCccccc
Confidence 366666778877554444455555543 667777777776543 344555555433233 5666777776643321
Q ss_pred ---------chHHHHHHHHHHhhC-CCceeEEEeecCC
Q 021693 83 ---------GHVLEACKDSLKKLQ-LDYLDLYLVHFPV 110 (309)
Q Consensus 83 ---------~~i~~~ve~SL~~L~-~d~iDl~~lH~p~ 110 (309)
...++.+++..+.|. -..=++++++..+
T Consensus 109 ~~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~l~g~~ 146 (178)
T PF14606_consen 109 FDNSRGETVEEFREALREAVEQLRKEGDKNLYYLDGEE 146 (178)
T ss_dssp S--TTS--HHHHHHHHHHHHHHHHHTT-TTEEEE-HHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCchh
Confidence 456677777777772 2345788888765
No 152
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=26.97 E-value=5.4e+02 Score=24.27 Aligned_cols=59 Identities=8% Similarity=-0.010 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCCccEEEEecCCCC-CcchHHHHHHHHHHhhCCCceeEEEeecCCC
Q 021693 48 RNEAEVGEALAEAFSTGLVKREDLFITTKLWNS-DHGHVLEACKDSLKKLQLDYLDLYLVHFPVA 111 (309)
Q Consensus 48 gsE~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~-~~~~i~~~ve~SL~~L~~d~iDl~~lH~p~~ 111 (309)
|+++.+-++|.++.++. +.+-++|.|=+... -.+.+..-+++.-++++ +.++.+|.|..
T Consensus 68 G~~~kL~~~I~~~~~~~--~p~~I~v~~tC~~~iIGdDi~~v~~~~~~~~~---~~vi~v~t~gf 127 (430)
T cd01981 68 GSQEKVVENITRKDKEE--KPDLIVLTPTCTSSILQEDLQNFVRAAGLSSK---SPVLPLDVNHY 127 (430)
T ss_pred CcHHHHHHHHHHHHHhc--CCCEEEEeCCccHHHHhhCHHHHHHHhhhccC---CCeEEecCCCc
Confidence 45566677777665544 33445666543211 12444444444333433 57888998876
No 153
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=26.80 E-value=2.4e+02 Score=20.73 Aligned_cols=62 Identities=16% Similarity=0.089 Sum_probs=39.2
Q ss_pred HHHHHHHHHHCCCeeEEeecCCCHHHHHHHHHhcCCCceEEeeccCCCCCchHHHHHHHHcCCeEEEec
Q 021693 141 TWHAMEDLVSMGLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHT 209 (309)
Q Consensus 141 ~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~ 209 (309)
+-.+|...++.|++. . ...+..+.+.......+++--..+. .....+..+|++++|+++.|.
T Consensus 4 ~~~~l~~a~ragkl~-~-----G~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Ip~~~~~ 65 (99)
T PRK01018 4 FNRELRVAVDTGKVI-L-----GSKRTIKAIKLGKAKLVIVASNCPK-DIKEDIEYYAKLSGIPVYEYE 65 (99)
T ss_pred HHHHHHHHHHcCCEE-E-----cHHHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 445678888888865 2 3345566666665554444433221 122678899999999987763
No 154
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=26.65 E-value=5.8e+02 Score=24.48 Aligned_cols=114 Identities=18% Similarity=0.096 Sum_probs=61.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCccEEEEecCCC-CCcchHHHHHHHHHHhhC-CCceeEEEeecCCCCCCCCCCCCCC
Q 021693 45 ADYRNEAEVGEALAEAFSTGLVKREDLFITTKLWN-SDHGHVLEACKDSLKKLQ-LDYLDLYLVHFPVATKHTGVGTTDS 122 (309)
Q Consensus 45 ~~YgsE~~lG~~l~~~~~~~~~~R~~~~i~tK~~~-~~~~~i~~~ve~SL~~L~-~d~iDl~~lH~p~~~~~~~~~~~~~ 122 (309)
-.||.+..+-++|.+..++. +.+-++|.|=+-. .-.+.+..-+++.-++.. ..-+.++.++.|+.....
T Consensus 72 ~VfGg~~~L~~aI~~~~~~~--~P~~I~V~ttC~~eiIGDDi~~v~~~~~~~~p~~~~~pvi~v~tpgF~g~~------- 142 (455)
T PRK14476 72 TILGGDENVEEAILNICKKA--KPKIIGLCTTGLTETRGDDVAGALKEIRARHPELADTPIVYVSTPDFKGAL------- 142 (455)
T ss_pred eEeCCHHHHHHHHHHHHHhh--CCCEEEEeCcchHhhhhccHHHHHHHHHhhccccCCCeEEEecCCCCCCcH-------
Confidence 36788888899998876554 3445666654311 112444444333323321 113678889988763100
Q ss_pred CCCcCCccccccCCcHHHHHHHHHH-HH--------HCCCeeEEeecC---CCHHHHHHHHHhcCCCce
Q 021693 123 ALDADGVLEIDTTISLETTWHAMED-LV--------SMGLVRSIGISN---YDIFLTRDCLAYSKVKPV 179 (309)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~L~~-l~--------~~Gkir~iGvs~---~~~~~l~~~~~~~~~~~~ 179 (309)
....+.++.++.+ +. +.++|--||-++ -+.+.++++++..++++.
T Consensus 143 ------------~~G~~~a~~al~~~~~~~~~~~~~~~~~VNiIgg~~~~~~D~~elk~lL~~~Gl~v~ 199 (455)
T PRK14476 143 ------------EDGWAAAVEAIVEALVPPASSTGRRPRQVNVLPGSHLTPGDIEELREIIEAFGLEPI 199 (455)
T ss_pred ------------HHHHHHHHHHHHHHhcccccCCCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCceE
Confidence 1122334434332 22 345688886443 345678888888877653
No 155
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=26.24 E-value=3.6e+02 Score=21.94 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=23.4
Q ss_pred cccceeccccChhhHHHHHHHHHHcCCcEEecCCCCC
Q 021693 12 PIIGLGVWRMDESNIRDLIINAIKIGYRHIDCAADYR 48 (309)
Q Consensus 12 s~lg~G~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg 48 (309)
|-+..|.-..+++....+++.+-+..|..+-||+.++
T Consensus 38 PLlivGp~~~dee~~E~~vKi~ekfnipivaTa~~~~ 74 (170)
T COG1880 38 PLLIVGPLALDEELLELAVKIIEKFNIPIVATASSMG 74 (170)
T ss_pred ceEEecccccCHHHHHHHHHHHHhcCCceEecchhhc
Confidence 3445555455554444444444445599999999997
No 156
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=26.19 E-value=5.5e+02 Score=24.07 Aligned_cols=111 Identities=15% Similarity=0.174 Sum_probs=65.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCccEEEEecCCCC-CcchHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCC
Q 021693 45 ADYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNS-DHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSA 123 (309)
Q Consensus 45 ~~YgsE~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~-~~~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~ 123 (309)
-.||.|..+-++|++..++. +.+-++|.|=+... -.+.+..-+++.-++.+ +.++.+|.|......
T Consensus 66 ~VfGg~~~L~~~i~~~~~~~--~P~~i~v~~tC~~~~iGdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~~-------- 132 (410)
T cd01968 66 VIFGGEKKLYKAILEIIERY--HPKAVFVYSTCVVALIGDDIDAVCKTASEKFG---IPVIPVHSPGFVGNK-------- 132 (410)
T ss_pred eeeccHHHHHHHHHHHHHhC--CCCEEEEECCCchhhhccCHHHHHHHHHHhhC---CCEEEEECCCcccCh--------
Confidence 45788889999999877664 44556666654221 12555555554444443 678889987652110
Q ss_pred CCcCCccccccCCcHHHHHHHHHHHH---------HCCCeeEEeecCC--CHHHHHHHHHhcCCCce
Q 021693 124 LDADGVLEIDTTISLETTWHAMEDLV---------SMGLVRSIGISNY--DIFLTRDCLAYSKVKPV 179 (309)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~L~~l~---------~~Gkir~iGvs~~--~~~~l~~~~~~~~~~~~ 179 (309)
......++++|-+.. +.+.|--||-.++ +...+.++++..++++.
T Consensus 133 -----------~~G~~~a~~~l~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v~ 188 (410)
T cd01968 133 -----------NLGNKLACEALLDHVIGTEEPEPLTPYDINLIGEFNVAGELWGVKPLLEKLGIRVL 188 (410)
T ss_pred -----------hHHHHHHHHHHHHHhcCCCCcccCCCCcEEEECCCCCcccHHHHHHHHHHcCCeEE
Confidence 122334444444332 1467888884443 34478888888887644
No 157
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=26.12 E-value=4e+02 Score=22.51 Aligned_cols=60 Identities=20% Similarity=0.177 Sum_probs=39.6
Q ss_pred HHHHHHHHHHCCCeeEEeecCC-CHHHHHHHHHhcCCCceEEeeccCCCCCchHHHHHHHHcCCeEEE
Q 021693 141 TWHAMEDLVSMGLVRSIGISNY-DIFLTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVTA 207 (309)
Q Consensus 141 ~~~~L~~l~~~Gkir~iGvs~~-~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a 207 (309)
.++.+++++++..=-.||..+- +.++++.+++.. -.+. .+|.. +.+++++|+++|+.++.
T Consensus 46 a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aG-A~Fi-----vsP~~-~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 46 ALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAG-AQFI-----VSPGL-TPELAKHAQDHGIPIIP 106 (204)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcC-CCEE-----ECCCC-CHHHHHHHHHcCCcEEC
Confidence 5566667766543356888775 667888877754 2222 34422 46899999999998764
No 158
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=25.92 E-value=1.3e+02 Score=23.43 Aligned_cols=44 Identities=11% Similarity=0.017 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHC
Q 021693 86 LEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSM 151 (309)
Q Consensus 86 ~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~ 151 (309)
|..+++-|+.+....+|.++++..+.. .....++...++.|.+.
T Consensus 54 Rp~l~~ll~~~~~g~vd~vvv~~ldRl----------------------~R~~~d~~~~~~~l~~~ 97 (140)
T cd03770 54 RPGFNRMIEDIEAGKIDIVIVKDMSRL----------------------GRNYLKVGLYMEILFPK 97 (140)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchh----------------------ccCHHHHHHHHHHHHhh
Confidence 566677777777778999998877664 23355677777777776
No 159
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=25.82 E-value=2.4e+02 Score=24.86 Aligned_cols=49 Identities=18% Similarity=0.269 Sum_probs=34.1
Q ss_pred ceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCCeeEEeecCCCHHHHHHH
Q 021693 100 YLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGISNYDIFLTRDC 170 (309)
Q Consensus 100 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~ 170 (309)
..|+++|..|... .| ...-.++++.|.+|+++|+ .|=+.+|+...+.+.
T Consensus 157 ~p~lllLDEP~~g-------------------vD-~~~~~~i~~lL~~l~~eg~--tIl~vtHDL~~v~~~ 205 (254)
T COG1121 157 NPDLLLLDEPFTG-------------------VD-VAGQKEIYDLLKELRQEGK--TVLMVTHDLGLVMAY 205 (254)
T ss_pred CCCEEEecCCccc-------------------CC-HHHHHHHHHHHHHHHHCCC--EEEEEeCCcHHhHhh
Confidence 3588888877652 12 3445678999999999987 566778877655543
No 160
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=25.73 E-value=4.6e+02 Score=22.98 Aligned_cols=64 Identities=11% Similarity=0.205 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHC-CCeeEEeecCCCHHHHHHHHHhcCCCceEEeeccCCCCCchHHHHHHHHcCCeEEEecc
Q 021693 140 TTWHAMEDLVSM-GLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTP 210 (309)
Q Consensus 140 ~~~~~L~~l~~~-Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~p 210 (309)
.+...++.+++. +. -+.+-++++..++.+++. +. ..++-+..-. ..++++.++++|..++.+.-
T Consensus 62 rl~~~v~~~~~~~~~--plsiDT~~~~vi~~al~~-G~-~iINsis~~~---~~~~~~l~~~~~~~vV~m~~ 126 (257)
T TIGR01496 62 RVVPVIKALRDQPDV--PISVDTYRAEVARAALEA-GA-DIINDVSGGQ---DPAMLEVAAEYGVPLVLMHM 126 (257)
T ss_pred HHHHHHHHHHhcCCC--eEEEeCCCHHHHHHHHHc-CC-CEEEECCCCC---CchhHHHHHHcCCcEEEEeC
Confidence 355666666665 43 388999999999999987 33 3455443321 45789999999999998653
No 161
>TIGR00321 dhys deoxyhypusine synthase. This family of apparent orthologs has an unusual UPGMA difference tree, in which the members from the archaea M. jannaschii and P. horikoshii cluster with the known eukaryotic deoxyhypusine synthases. Separated by a fairly deep branch, although still strongly related, is a small cluster of proteins from Methanobacterium thermoautotrophicum and Archeoglobus fulgidus, the latter of which has two.
Probab=25.37 E-value=5.1e+02 Score=23.44 Aligned_cols=50 Identities=14% Similarity=0.067 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHH-cCCcEEecCCCCCCHHHHHHHHHHHHhcCCCCCccEEEEec
Q 021693 24 SNIRDLIINAIK-IGYRHIDCAADYRNEAEVGEALAEAFSTGLVKREDLFITTK 76 (309)
Q Consensus 24 ~~~~~~l~~A~~-~Gin~~DTA~~YgsE~~lG~~l~~~~~~~~~~R~~~~i~tK 76 (309)
.+|.+++...++ .+.+.|=|=..==.-.-++..|+.+++.+.+ +++|+|=
T Consensus 31 ~~A~~i~~~m~~~~~~~ifLt~tg~mvsaGlr~ii~~Li~~g~V---d~ivtTg 81 (301)
T TIGR00321 31 GEADKIWKEMCFDEEITIFMGYAGNLVPSGMREIIAYLIQHGMI---DALVTTG 81 (301)
T ss_pred HHHHHHHHHHHhCCCCeEEEEeccccchhhHHHHHHHHHHcCCe---eEEEeCC
Confidence 356777777773 3455543322111245577888876655533 4566664
No 162
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=25.37 E-value=5.1e+02 Score=24.47 Aligned_cols=78 Identities=13% Similarity=0.127 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHCCCeeEEeecCCCHHHHHHHHHhcCCCceEEeeccCCCCCc---hHHHHHHHHcCCeEEEeccCCCCCC
Q 021693 140 TTWHAMEDLVSMGLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQR---DSLVKFCQKHGICVTAHTPLGGAVA 216 (309)
Q Consensus 140 ~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~ll~~~~~~gi~v~a~~pl~~G~l 216 (309)
.+...++.+.++.-|....+-..+.....+.+.....+.+++..+-||...- ..+.+.|+++|+-++.=+.|+.+++
T Consensus 114 ~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~~ 193 (396)
T COG0626 114 GTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVL 193 (396)
T ss_pred hHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccccc
Confidence 4667777777777777777777776665555543334567888888887653 6789999999998999888888775
Q ss_pred C
Q 021693 217 N 217 (309)
Q Consensus 217 ~ 217 (309)
.
T Consensus 194 q 194 (396)
T COG0626 194 Q 194 (396)
T ss_pred c
Confidence 5
No 163
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=25.16 E-value=3.9e+02 Score=26.29 Aligned_cols=67 Identities=12% Similarity=-0.000 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHC-CCeeEEeecCCCHHHHHHHHHhcCCCceEEeeccCCCCCchHHHHHHHHcCCeEEEec
Q 021693 140 TTWHAMEDLVSM-GLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHT 209 (309)
Q Consensus 140 ~~~~~L~~l~~~-Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~ 209 (309)
+++.+|..++.. ++|.-+|..+... .+..+.+..+++ +.++.++....-...+..+++.|+.++.-.
T Consensus 85 Dil~al~~a~~~~~~ia~vg~~~~~~-~~~~~~~ll~~~--i~~~~~~~~~e~~~~~~~l~~~G~~~viG~ 152 (526)
T TIGR02329 85 DVMQALARARRIASSIGVVTHQDTPP-ALRRFQAAFNLD--IVQRSYVTEEDARSCVNDLRARGIGAVVGA 152 (526)
T ss_pred hHHHHHHHHHhcCCcEEEEecCcccH-HHHHHHHHhCCc--eEEEEecCHHHHHHHHHHHHHCCCCEEECC
Confidence 588888888764 6888888887653 344444444443 444555432223678888899998877533
No 164
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=25.07 E-value=2.9e+02 Score=23.10 Aligned_cols=78 Identities=15% Similarity=0.095 Sum_probs=46.9
Q ss_pred ceeccccChhhHHHHHHHHHHcCCcEEecCCCCCC-HHHHH--HHHHHHHhcCCCCCccEEEEecCCCCCcchHHHHHHH
Q 021693 15 GLGVWRMDESNIRDLIINAIKIGYRHIDCAADYRN-EAEVG--EALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKD 91 (309)
Q Consensus 15 g~G~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Ygs-E~~lG--~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~i~~~ve~ 91 (309)
.+.+..++.++...+.+.|.+.|..++=|+..|.. -..++ +.+++.++ .+-.+.++. +..+.+...+-++.
T Consensus 122 I~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~----~~v~ik~aG--Gikt~~~~l~~~~~ 195 (203)
T cd00959 122 ILETGLLTDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVG----GRVGVKAAG--GIRTLEDALAMIEA 195 (203)
T ss_pred EEecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC----CCceEEEeC--CCCCHHHHHHHHHh
Confidence 34444566788899999999999999999988851 11112 33333211 122344442 22345666666666
Q ss_pred HHHhhCC
Q 021693 92 SLKKLQL 98 (309)
Q Consensus 92 SL~~L~~ 98 (309)
-..|+|+
T Consensus 196 g~~riG~ 202 (203)
T cd00959 196 GATRIGT 202 (203)
T ss_pred ChhhccC
Confidence 6667665
No 165
>PRK14017 galactonate dehydratase; Provisional
Probab=24.93 E-value=3.6e+02 Score=25.04 Aligned_cols=68 Identities=10% Similarity=0.126 Sum_probs=49.6
Q ss_pred HHHHHHHHHCCCee-EEeecCCCHHHHHHHHHhcCCCceEEeeccCCCC---CchHHHHHHHHcCCeEEEeccC
Q 021693 142 WHAMEDLVSMGLVR-SIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYF---QRDSLVKFCQKHGICVTAHTPL 211 (309)
Q Consensus 142 ~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~ll~~~~~~gi~v~a~~pl 211 (309)
++.+.+|++...+. ..|=|.++...+..+++... ..++|......- .-..+.+.|+++|+.++.++..
T Consensus 217 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a--~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 288 (382)
T PRK14017 217 AEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGG--VDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCPL 288 (382)
T ss_pred HHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCC--CCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCCC
Confidence 56788888876665 56667788888888888754 356777665432 2367899999999999887653
No 166
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.88 E-value=4.9e+02 Score=26.56 Aligned_cols=66 Identities=9% Similarity=0.046 Sum_probs=41.3
Q ss_pred chHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHC--CCeeEEeec
Q 021693 83 GHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSM--GLVRSIGIS 160 (309)
Q Consensus 83 ~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~--Gkir~iGvs 160 (309)
+.+++-++.....-.....-+++|+..+. .....+.+|.+..++ +.+.+|.++
T Consensus 107 DdIReLie~~~~~P~~gr~KViIIDEah~-------------------------Ls~~AaNALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 107 DEMAQLLDKAVYAPTAGRFKVYMIDEVHM-------------------------LTNHAFNAMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred HHHHHHHHHHHhchhcCCceEEEEEChHh-------------------------cCHHHHHHHHHhhccCCCCceEEEEe
Confidence 55665555544333334556788876543 233566777777777 889999999
Q ss_pred CCCHHHHHHHHHh
Q 021693 161 NYDIFLTRDCLAY 173 (309)
Q Consensus 161 ~~~~~~l~~~~~~ 173 (309)
+.....+.-+++.
T Consensus 162 tep~kLlpTIrSR 174 (700)
T PRK12323 162 TDPQKIPVTVLSR 174 (700)
T ss_pred CChHhhhhHHHHH
Confidence 9765555444443
No 167
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=24.70 E-value=3e+02 Score=20.53 Aligned_cols=52 Identities=17% Similarity=0.068 Sum_probs=30.0
Q ss_pred ecCCCHHHHHHHHHhcCCCceEEeeccCCCCCchHHHHHHHHcCCeEEEecc
Q 021693 159 ISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTP 210 (309)
Q Consensus 159 vs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~p 210 (309)
.+..+.+.+..++.....+..++-.--+......++.++++++||++-.|..
T Consensus 36 ~~~l~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T 87 (109)
T cd00248 36 LSDLDPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMST 87 (109)
T ss_pred cccCCHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCc
Confidence 3444566666665543122222222222223346788999999999988874
No 168
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=24.70 E-value=3.8e+02 Score=23.86 Aligned_cols=67 Identities=15% Similarity=0.178 Sum_probs=43.3
Q ss_pred cHHHHHHHHHHHHHCCCeeEEeecCCC------------HHHHHHHHHhcCCCceEEeeccCCCCCc--hHHHHHHHHcC
Q 021693 137 SLETTWHAMEDLVSMGLVRSIGISNYD------------IFLTRDCLAYSKVKPVVNQFETHPYFQR--DSLVKFCQKHG 202 (309)
Q Consensus 137 ~~~~~~~~L~~l~~~Gkir~iGvs~~~------------~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~ll~~~~~~g 202 (309)
.....++..++++++|++-.||=+.+. ...+..+++.+..--..+|+..-..... ..+-+++++.|
T Consensus 105 ~m~~~lelA~k~v~eg~avaiGEvGrPHypVs~~v~~~~n~vl~~a~elA~dvdc~vqLHtes~~~~~~~~i~~~ak~~G 184 (285)
T COG1831 105 EMRHALELAAKLVEEGKAVAIGEVGRPHYPVSEEVWEASNEVLEYAMELAKDVDCAVQLHTESLDEETYEEIAEMAKEAG 184 (285)
T ss_pred HHHHHHHHHHHHHhccceeeeeccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCChHHHHHHHHHHHHhC
Confidence 355677888899999999888867653 1235566666642223355554433332 67888899998
Q ss_pred C
Q 021693 203 I 203 (309)
Q Consensus 203 i 203 (309)
+
T Consensus 185 ~ 185 (285)
T COG1831 185 I 185 (285)
T ss_pred C
Confidence 6
No 169
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=24.60 E-value=6.4e+02 Score=24.29 Aligned_cols=67 Identities=12% Similarity=0.179 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHC-CCeeEEeecCCCHHHHHHHHHhc-CCCceEEeeccCCCCCchHHHHHHHHcCCeEEEecc
Q 021693 139 ETTWHAMEDLVSM-GLVRSIGISNYDIFLTRDCLAYS-KVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTP 210 (309)
Q Consensus 139 ~~~~~~L~~l~~~-Gkir~iGvs~~~~~~l~~~~~~~-~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~p 210 (309)
+.+...++.+++. +. -+-+-+++++.++++++.. +..+.++-... ++-+.+.+.|+++|..+++.++
T Consensus 141 ~~v~~~Vk~V~~~~dv--PLSIDT~dpevleaAleagad~~plI~Sat~---dN~~~m~~la~~yg~pvVv~~~ 209 (450)
T PRK04165 141 EKFAKAVKKVAETTDL--PLILCSEDPAVLKAALEVVADRKPLLYAATK---ENYEEMAELAKEYNCPLVVKAP 209 (450)
T ss_pred HHHHHHHHHHHHhcCC--CEEEeCCCHHHHHHHHHhcCCCCceEEecCc---chHHHHHHHHHHcCCcEEEEch
Confidence 3455566666653 44 3678889999999999887 34455544332 1225788889999988888665
No 170
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=24.52 E-value=5.5e+02 Score=23.96 Aligned_cols=68 Identities=12% Similarity=0.037 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHCCCeeEEeecCCCHHHHHHHHHhcCCCceEEeecc------CCCCCchHHHHHHHHcCCeEEE
Q 021693 140 TTWHAMEDLVSMGLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFET------HPYFQRDSLVKFCQKHGICVTA 207 (309)
Q Consensus 140 ~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~------~~~~~~~~ll~~~~~~gi~v~a 207 (309)
-+.+.++++++.|..-.+.++..+...+.+.+..++.+..+++... +..-....+.+++++.++.|++
T Consensus 120 l~~~ii~~vr~a~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~ 193 (369)
T TIGR01304 120 LLGERIAEVRDSGVITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIA 193 (369)
T ss_pred HHHHHHHHHHhcceEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEE
Confidence 3556777888888777777776666677777777777666655322 2111235688889999999886
No 171
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=24.38 E-value=2.6e+02 Score=24.42 Aligned_cols=100 Identities=15% Similarity=0.111 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHH-HHHHHHHHCCCeeEEeecCC
Q 021693 84 HVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTW-HAMEDLVSMGLVRSIGISNY 162 (309)
Q Consensus 84 ~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~l~~~Gkir~iGvs~~ 162 (309)
--...++.-|+..| +|||++=+-|-... .. ..+++ +.++-+++-|---+.|=+-+
T Consensus 22 lg~~~~~dlLe~ag-~yID~~K~g~Gt~~----------------------l~-~~~~l~eki~l~~~~gV~v~~GGtl~ 77 (244)
T PF02679_consen 22 LGLRYLEDLLESAG-DYIDFLKFGWGTSA----------------------LY-PEEILKEKIDLAHSHGVYVYPGGTLF 77 (244)
T ss_dssp --HHHHHHHHHHHG-GG-SEEEE-TTGGG----------------------GS-TCHHHHHHHHHHHCTT-EEEE-HHHH
T ss_pred CCHHHHHHHHHHhh-hhccEEEecCceee----------------------ec-CHHHHHHHHHHHHHcCCeEeCCcHHH
Confidence 44577888899888 89999999885541 12 22344 44444455566556664333
Q ss_pred CHH----HHHHHHHhcC-CCceEEeeccCCCCCc----hHHHHHHHHcCCeEEE
Q 021693 163 DIF----LTRDCLAYSK-VKPVVNQFETHPYFQR----DSLVKFCQKHGICVTA 207 (309)
Q Consensus 163 ~~~----~l~~~~~~~~-~~~~~~q~~~~~~~~~----~~ll~~~~~~gi~v~a 207 (309)
... .+++.++.++ ..+..+.+.-....-+ ..++..++++|..|++
T Consensus 78 E~a~~q~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 78 EVAYQQGKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp HHHHHTT-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred HHHHhcChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 221 2333333331 2334554444433322 4678888888877765
No 172
>PRK06361 hypothetical protein; Provisional
Probab=24.32 E-value=4.2e+02 Score=22.06 Aligned_cols=184 Identities=11% Similarity=0.026 Sum_probs=92.0
Q ss_pred hhHHHHHHHHHHcCCcEEecCCCCC--CH-HHHH---HHHHHHHhcCCCCCccEEEEecCCCCCcchHHHHHHHHHHhhC
Q 021693 24 SNIRDLIINAIKIGYRHIDCAADYR--NE-AEVG---EALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKKLQ 97 (309)
Q Consensus 24 ~~~~~~l~~A~~~Gin~~DTA~~Yg--sE-~~lG---~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~i~~~ve~SL~~L~ 97 (309)
....++++.|.+.|+..+=.+++.. +. ..+- +..+++ +.. ..=+++...-+.....+.+ ..+.+.+.+++
T Consensus 10 ~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~-~~~--~~i~v~~GiE~~~~~~~~~-~~~~~~~~~~~ 85 (212)
T PRK06361 10 LIPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEEL-ELY--WDIEVIPGVELTHVPPKLI-PKLAKKARDLG 85 (212)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHH-hhc--CCCEEEEEEEEcccCchhh-chHHHHHHHCC
Confidence 3467899999999999887777754 11 1111 111110 010 1223444444332333333 33334555554
Q ss_pred CCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCCeeEEeecCC-CHHHHHHHHHhcCC
Q 021693 98 LDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGISNY-DIFLTRDCLAYSKV 176 (309)
Q Consensus 98 ~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~-~~~~l~~~~~~~~~ 176 (309)
.|+..+|...... ...... . .++.+.|.+.-+|=-.. ....+ +++...++
T Consensus 86 ---~~~~svH~~~~~~---------------------~~~~~~---~-~~a~~~~~~dvlaHpd~~~~~~~-~~~~~~~~ 136 (212)
T PRK06361 86 ---AEIVVVHGETIVE---------------------PVEEGT---N-LAAIECEDVDILAHPGLITEEEA-ELAAENGV 136 (212)
T ss_pred ---CEEEEECCCCcch---------------------hhhhhh---H-HHHHhCCCCcEecCcchhhHHHH-HHHHHcCe
Confidence 5666899432200 000000 1 34667787654442221 22222 33333333
Q ss_pred CceEEeeccCCCCCchHHHHHHHHcCCeEEEeccCCCCCCCCcccCCccCCCcHHHHHHHHHcCCCHHHHHHHH
Q 021693 177 KPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTPLGGAVANTEWFGTVSCLDDPVLKGLAEKYKRTVAQTVLRW 250 (309)
Q Consensus 177 ~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~l~~ia~~~~~s~aq~al~~ 250 (309)
.+.++- ..........+++.|++.|+.++.-|....- ..+...+.+..++++.|.+..++--.+
T Consensus 137 ~lEin~-~~~~~~~~~~~l~~a~~~gi~vv~~SDaH~~---------~d~~~~~~~~~i~~~~gl~~~~v~~~~ 200 (212)
T PRK06361 137 FLEITA-RKGHSLTNGHVARIAREAGAPLVINTDTHAP---------SDLITYEFARKVALGAGLTEKELEEAL 200 (212)
T ss_pred EEEEEC-CCCcccchHHHHHHHHHhCCcEEEECCCCCH---------HHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 222221 1111122367999999999998777765421 112234677788888888887765444
No 173
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=24.23 E-value=4.9e+02 Score=22.78 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=22.8
Q ss_pred ccChhhHHHHHHHHHHcCCcEEecCCCCC
Q 021693 20 RMDESNIRDLIINAIKIGYRHIDCAADYR 48 (309)
Q Consensus 20 ~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg 48 (309)
.++.+...+.++..++.|++-+=....-|
T Consensus 14 ~iD~~~~~~~i~~l~~~Gv~gi~~~GstG 42 (281)
T cd00408 14 EVDLDALRRLVEFLIEAGVDGLVVLGTTG 42 (281)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCCc
Confidence 46778889999999999999776555544
No 174
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=24.21 E-value=4.9e+02 Score=22.78 Aligned_cols=74 Identities=14% Similarity=0.081 Sum_probs=41.5
Q ss_pred CcHHHHHHHHHHHHHCC---CeeEEeecCC----CHHHHHHHHHhcCCCceEEeeccCCCCCchHHHHHHHHcCCeEE-E
Q 021693 136 ISLETTWHAMEDLVSMG---LVRSIGISNY----DIFLTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVT-A 207 (309)
Q Consensus 136 ~~~~~~~~~L~~l~~~G---kir~iGvs~~----~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~-a 207 (309)
...+++++.+++++++. .+-+.+..|- ..+..-+.+..+++. .+-++.-+.....++++.|+++|+..+ .
T Consensus 69 ~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvd--gviipDlp~ee~~~~~~~~~~~gl~~i~l 146 (256)
T TIGR00262 69 MTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVD--GVLVADLPLEESGDLVEAAKKHGVKPIFL 146 (256)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCC--EEEECCCChHHHHHHHHHHHHCCCcEEEE
Confidence 34567888899988652 2336666652 223333333444442 333333333334678999999998744 5
Q ss_pred eccC
Q 021693 208 HTPL 211 (309)
Q Consensus 208 ~~pl 211 (309)
.+|-
T Consensus 147 v~P~ 150 (256)
T TIGR00262 147 VAPN 150 (256)
T ss_pred ECCC
Confidence 5543
No 175
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=24.02 E-value=6.7e+02 Score=24.30 Aligned_cols=101 Identities=10% Similarity=0.073 Sum_probs=52.8
Q ss_pred chHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCC-CeeEEeecC
Q 021693 83 GHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMG-LVRSIGISN 161 (309)
Q Consensus 83 ~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-kir~iGvs~ 161 (309)
+.+.+.++...++.|+..+ .+..... ....+.+.+.++++++.| .-..+++++
T Consensus 225 e~Vv~Ei~~l~~~~gv~~~---~~~Dd~f-----------------------~~~~~~~~~l~~~l~~~~~l~i~w~~~~ 278 (497)
T TIGR02026 225 KKFVDEIEWLVRTHGVGFF---ILADEEP-----------------------TINRKKFQEFCEEIIARNPISVTWGINT 278 (497)
T ss_pred HHHHHHHHHHHHHcCCCEE---EEEeccc-----------------------ccCHHHHHHHHHHHHhcCCCCeEEEEec
Confidence 6788888888787776544 3332111 122344556667777776 323455443
Q ss_pred C-C----HHHHHHHHHhcCCCceEEeeccCCCCC--------------chHHHHHHHHcCCeEEEeccC
Q 021693 162 Y-D----IFLTRDCLAYSKVKPVVNQFETHPYFQ--------------RDSLVKFCQKHGICVTAHTPL 211 (309)
Q Consensus 162 ~-~----~~~l~~~~~~~~~~~~~~q~~~~~~~~--------------~~~ll~~~~~~gi~v~a~~pl 211 (309)
. + ...+.+++..+++. .+.+-+-..++ ..+.++.|+++||.+.+.-.+
T Consensus 279 r~~~i~~d~ell~~l~~aG~~--~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~ 345 (497)
T TIGR02026 279 RVTDIVRDADILHLYRRAGLV--HISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFIT 345 (497)
T ss_pred ccccccCCHHHHHHHHHhCCc--EEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEE
Confidence 2 1 12333444444432 22222221111 146788899999987655444
No 176
>PRK06740 histidinol-phosphatase; Validated
Probab=23.73 E-value=5.6e+02 Score=23.36 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHcCCcEEecCCC
Q 021693 24 SNIRDLIINAIKIGYRHIDCAAD 46 (309)
Q Consensus 24 ~~~~~~l~~A~~~Gin~~DTA~~ 46 (309)
....+.+++|++.|+..|=-+++
T Consensus 61 ~~~e~yv~~Ai~~G~~~ig~SdH 83 (331)
T PRK06740 61 KWIDLYLEEALRKGIKEVGIVDH 83 (331)
T ss_pred chHHHHHHHHHHCCCcEEEECCC
Confidence 45788999999999997755554
No 177
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=23.68 E-value=3.2e+02 Score=20.44 Aligned_cols=50 Identities=14% Similarity=0.070 Sum_probs=30.0
Q ss_pred cCCCHHHHHHHHHhcCCCceEEeeccCCCCCchHHHHHHHHcCCeEEEecc
Q 021693 160 SNYDIFLTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTP 210 (309)
Q Consensus 160 s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~p 210 (309)
+..+.+.++.++... .++.++-.--+....+.++.++++++||++-.|..
T Consensus 38 ~~l~~e~l~~l~~~~-peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m~T 87 (109)
T cd05560 38 EDLTAAHFEALLALQ-PEVILLGTGERQRFPPPALLAPLLARGIGVEVMDT 87 (109)
T ss_pred ccCCHHHHHHHHhcC-CCEEEEecCCCCCcCCHHHHHHHHHcCCeEEEECH
Confidence 344555666655542 23333333333333457888999999999998874
No 178
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=23.58 E-value=40 Score=23.90 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=17.6
Q ss_pred cCCHHHHHHHHchhccCccCCCC
Q 021693 278 ELSKEDMDVIKSIDRKYRTNQPA 300 (309)
Q Consensus 278 ~L~~~~~~~l~~~~~~~~~~~~~ 300 (309)
+||++|.+.|+++-.+.+..+|.
T Consensus 2 ~LSe~E~r~L~eiEr~L~~~DP~ 24 (82)
T PF11239_consen 2 PLSEHEQRRLEEIERQLRADDPR 24 (82)
T ss_pred CCCHHHHHHHHHHHHHHHhcCcH
Confidence 68999999999987766555553
No 179
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=23.52 E-value=4.1e+02 Score=25.96 Aligned_cols=113 Identities=12% Similarity=0.015 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCccEEEEecCCCCCcchHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCc
Q 021693 47 YRNEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDA 126 (309)
Q Consensus 47 YgsE~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~ 126 (309)
+|+++.+-++|.++.++. +.+-++|.|=+. .+-+-..++...++++. .++++.++.|......
T Consensus 67 ~G~~ekL~~aI~~~~~~~--~P~~I~V~sTC~---seiIGdDi~~v~~~~~~-~~~Vi~v~t~gf~~~~----------- 129 (519)
T PRK02910 67 RGTAELLKDTLRRADERF--QPDLIVVGPSCT---AELLQEDLGGLAKHAGL-PIPVLPLELNAYRVKE----------- 129 (519)
T ss_pred CChHHHHHHHHHHHHHhc--CCCEEEEeCCcH---HHHhccCHHHHHHHhCC-CCCEEEEecCCccccc-----------
Confidence 467777888888765443 333445655431 12222333333344444 3679999988763210
Q ss_pred CCccccccCCcHHHHHHHHHH--------HHHCCCeeEEeecCC------CHHHHHHHHHhcCCCceE
Q 021693 127 DGVLEIDTTISLETTWHAMED--------LVSMGLVRSIGISNY------DIFLTRDCLAYSKVKPVV 180 (309)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~L~~--------l~~~Gkir~iGvs~~------~~~~l~~~~~~~~~~~~~ 180 (309)
.+.....+..+++.+.. -.+.++|--||.++. +...++++++..++++.+
T Consensus 130 ----~~G~~~al~~lv~~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~ 193 (519)
T PRK02910 130 ----NWAADETFYQLVRALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNV 193 (519)
T ss_pred ----chHHHHHHHHHHHHHhhhcccccccCCCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEE
Confidence 00001112222322221 012356888887642 345788888888775433
No 180
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=23.33 E-value=3.4e+02 Score=20.62 Aligned_cols=65 Identities=17% Similarity=0.138 Sum_probs=45.0
Q ss_pred cHHHHHHHHHHHHHCCCeeEEeecCCCHHHHHHHHHhcCCCceEEeeccCCCCCchHHHHHHHHcCCeEEE
Q 021693 137 SLETTWHAMEDLVSMGLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVTA 207 (309)
Q Consensus 137 ~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a 207 (309)
....++..|...++.|++. . ...+..+++.......+++--..++-.-...+..+|++.+|+++-
T Consensus 10 l~~ki~~lL~la~ragkl~-~-----G~~~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~ 74 (117)
T TIGR03677 10 LANKALEAVEKARETGKIK-K-----GTNEVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVY 74 (117)
T ss_pred HHHHHHHHHHHHHHcCCEe-E-----cHHHHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEE
Confidence 3467888888899999854 2 445667777777666666655554422236788999999999653
No 181
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=23.32 E-value=63 Score=25.41 Aligned_cols=17 Identities=24% Similarity=0.218 Sum_probs=12.5
Q ss_pred HHHHHHHHcCCcEEecC
Q 021693 28 DLIINAIKIGYRHIDCA 44 (309)
Q Consensus 28 ~~l~~A~~~Gin~~DTA 44 (309)
..+...++.|||+||-=
T Consensus 30 ~~i~~QL~~GiR~lDlr 46 (146)
T PF00388_consen 30 WSIREQLESGIRYLDLR 46 (146)
T ss_dssp HHHHHHHHTT--EEEEE
T ss_pred HhHHHHHhccCceEEEE
Confidence 46899999999999854
No 182
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.29 E-value=2.6e+02 Score=23.59 Aligned_cols=59 Identities=10% Similarity=0.098 Sum_probs=38.8
Q ss_pred HHHHHHHHHHCCCeeEEeecCC-CHHHHHHHHHhcCCCceEEeeccCCCCCchHHHHHHHHcCCeEE
Q 021693 141 TWHAMEDLVSMGLVRSIGISNY-DIFLTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVT 206 (309)
Q Consensus 141 ~~~~L~~l~~~Gkir~iGvs~~-~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~ 206 (309)
..+.+++++++..=-.||..+- +.++++++++..- ++-.+|. -+.+++++|+++||.++
T Consensus 42 a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA------~FivSP~-~~~~vi~~a~~~~i~~i 101 (201)
T PRK06015 42 ALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGS------RFIVSPG-TTQELLAAANDSDVPLL 101 (201)
T ss_pred HHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCC------CEEECCC-CCHHHHHHHHHcCCCEe
Confidence 5556666665543356887765 6677887777642 2233442 34689999999998875
No 183
>PRK10200 putative racemase; Provisional
Probab=23.26 E-value=2.9e+02 Score=23.73 Aligned_cols=82 Identities=9% Similarity=-0.123 Sum_probs=51.5
Q ss_pred chHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCCeeEEeecCC
Q 021693 83 GHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGISNY 162 (309)
Q Consensus 83 ~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~ 162 (309)
+..++=++..-.+.+.++++.+.+|+++..+.... . .+.+...+.....+.++.|.+.| +..|-+...
T Consensus 17 ~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~------~-----~~~~~~~~~~~l~~~~~~L~~~g-~~~iviaCN 84 (230)
T PRK10200 17 PYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEEC------Q-----RRGEWDKTGDILAEAALGLQRAG-AEGIVLCTN 84 (230)
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHH------H-----HCCCcchHHHHHHHHHHHHHHcC-CCEEEECCc
Confidence 55666666777778889999999999876321100 0 00011334566778888888777 688888887
Q ss_pred CHHHH-HHHHHhcCC
Q 021693 163 DIFLT-RDCLAYSKV 176 (309)
Q Consensus 163 ~~~~l-~~~~~~~~~ 176 (309)
++... +.+.+...+
T Consensus 85 Tah~~~~~l~~~~~i 99 (230)
T PRK10200 85 TMHKVADAIESRCSL 99 (230)
T ss_pred hHHHHHHHHHHhCCC
Confidence 76643 334333334
No 184
>PRK10799 metal-binding protein; Provisional
Probab=23.20 E-value=1.2e+02 Score=26.37 Aligned_cols=31 Identities=23% Similarity=0.126 Sum_probs=19.9
Q ss_pred HHHHHHcCCcEEecCCCCCCHHHHHHHHHHHH
Q 021693 30 IINAIKIGYRHIDCAADYRNEAEVGEALAEAF 61 (309)
Q Consensus 30 l~~A~~~Gin~~DTA~~YgsE~~lG~~l~~~~ 61 (309)
...|.+.|++++|.. +|.+|...=+.|.+++
T Consensus 200 ~~~A~~~gl~li~~G-H~~sE~~~~~~la~~L 230 (247)
T PRK10799 200 IHSAREQGLHFYAAG-HHATERGGIRALSEWL 230 (247)
T ss_pred HHHHHHCCCeEEEcC-chHHHHHHHHHHHHHH
Confidence 456778888888864 6667766444444444
No 185
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=23.16 E-value=3.9e+02 Score=22.13 Aligned_cols=72 Identities=15% Similarity=0.156 Sum_probs=45.3
Q ss_pred cHHHHHHHHHHHHHCCCeeEEeecCCC-HHHHHHHHHhcCCC-ceEEe----e--------ccCCCCCc--hHHHHHHHH
Q 021693 137 SLETTWHAMEDLVSMGLVRSIGISNYD-IFLTRDCLAYSKVK-PVVNQ----F--------ETHPYFQR--DSLVKFCQK 200 (309)
Q Consensus 137 ~~~~~~~~L~~l~~~Gkir~iGvs~~~-~~~l~~~~~~~~~~-~~~~q----~--------~~~~~~~~--~~ll~~~~~ 200 (309)
..+++.++|++|+++|. .+++++-+ ...+..++...++. +.+.. + ....+..+ ..++++|++
T Consensus 16 i~~~~~~al~~l~~~g~--~~~i~TGR~~~~~~~~~~~~~~~~~~I~~nGa~i~~~~~~~l~~~~i~~~~~~~i~~~~~~ 93 (254)
T PF08282_consen 16 ISPETIEALKELQEKGI--KLVIATGRSYSSIKRLLKELGIDDYFICSNGALIDDPKGKILYEKPIDSDDVKKILKYLKE 93 (254)
T ss_dssp SCHHHHHHHHHHHHTTC--EEEEECSSTHHHHHHHHHHTTHCSEEEEGGGTEEEETTTEEEEEESB-HHHHHHHHHHHHH
T ss_pred eCHHHHHHHHhhcccce--EEEEEccCcccccccccccccchhhhcccccceeeecccccchhhheeccchhheeehhhh
Confidence 44789999999999998 56666554 34566666655433 22110 1 00111111 578999999
Q ss_pred cCCeEEEecc
Q 021693 201 HGICVTAHTP 210 (309)
Q Consensus 201 ~gi~v~a~~p 210 (309)
+++.+..+.+
T Consensus 94 ~~~~~~~~~~ 103 (254)
T PF08282_consen 94 HNISFFFYTD 103 (254)
T ss_dssp TTCEEEEEES
T ss_pred cccccccccc
Confidence 9999988874
No 186
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=23.06 E-value=3e+02 Score=25.84 Aligned_cols=72 Identities=8% Similarity=0.048 Sum_probs=49.7
Q ss_pred HHHHHHHHHHCCCee-EEeecCCCHHHHHHHHHhcCCCceEEeeccCCCC---CchHHHHHHHHcCCeEEEeccCCCC
Q 021693 141 TWHAMEDLVSMGLVR-SIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYF---QRDSLVKFCQKHGICVTAHTPLGGA 214 (309)
Q Consensus 141 ~~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~ll~~~~~~gi~v~a~~pl~~G 214 (309)
-++.|.+|++...+- ..|=|.++...+..+++... .+++|......- .-..+...|+++|+.++.++....|
T Consensus 249 d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~a--vdil~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~e~~ 324 (395)
T cd03323 249 GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNA--VDIPLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNNHLG 324 (395)
T ss_pred CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCC--CcEEeeccccccCHHHHHHHHHHHHHcCCeEEEecCcccH
Confidence 467788888776655 55666677778888877654 356676665322 2267889999999999888764333
No 187
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=22.96 E-value=4.4e+02 Score=24.11 Aligned_cols=67 Identities=9% Similarity=0.136 Sum_probs=44.5
Q ss_pred HHHHHHHHHHCCCee-EEeecCCCHHHHHHHHHhcCCCceEEeeccCCC---CCchHHHHHHHHcCCeEEEec
Q 021693 141 TWHAMEDLVSMGLVR-SIGISNYDIFLTRDCLAYSKVKPVVNQFETHPY---FQRDSLVKFCQKHGICVTAHT 209 (309)
Q Consensus 141 ~~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~ll~~~~~~gi~v~a~~ 209 (309)
-++.+.+|++..-+. ..|=|.++...+..+++...+ .++|...... ..-..+.+.|+++|+.++.++
T Consensus 215 d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~--d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 215 NVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAV--DIIQPDISHAGGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred CHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCC--CEEecCccccCCHHHHHHHHHHHHHcCCcEeccC
Confidence 366788887775554 455566777788777765433 5666665432 122578889999999987655
No 188
>PRK08123 histidinol-phosphatase; Reviewed
Probab=22.72 E-value=5.2e+02 Score=22.61 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHcCCcEEecCCC
Q 021693 24 SNIRDLIINAIKIGYRHIDCAAD 46 (309)
Q Consensus 24 ~~~~~~l~~A~~~Gin~~DTA~~ 46 (309)
+...+++++|.+.|+..+=.+++
T Consensus 19 ~~~e~~v~~Ai~~Gl~~i~~tdH 41 (270)
T PRK08123 19 DDLEAYIERAIELGFTEITFTEH 41 (270)
T ss_pred CCHHHHHHHHHHcCCcEEEEecc
Confidence 34689999999999998766655
No 189
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=22.64 E-value=43 Score=28.31 Aligned_cols=14 Identities=36% Similarity=0.710 Sum_probs=12.6
Q ss_pred cCCcEEecCCCCCC
Q 021693 36 IGYRHIDCAADYRN 49 (309)
Q Consensus 36 ~Gin~~DTA~~Ygs 49 (309)
.|.++|+||+.||.
T Consensus 199 ~G~ryF~c~p~yGg 212 (234)
T KOG3206|consen 199 NGKRYFECAPKYGG 212 (234)
T ss_pred cceEeeecCCccCC
Confidence 59999999999983
No 190
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.63 E-value=6.1e+02 Score=23.36 Aligned_cols=150 Identities=12% Similarity=0.072 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHHHhcCCCCCccEEEEecCCCCCcchHHHHHHHHHHhhC-CCceeEEEeecCCCCCCCCCCCCCCCCCcC
Q 021693 49 NEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKKLQ-LDYLDLYLVHFPVATKHTGVGTTDSALDAD 127 (309)
Q Consensus 49 sE~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~i~~~ve~SL~~L~-~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~ 127 (309)
+-..+-++++.+.....+....+.|+|= + ..+.+.+-.+.-+++|+ .+....+-||.++........
T Consensus 163 n~~~v~~~i~~l~~~~~i~~r~itvST~-G--~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~--------- 230 (345)
T PRK14457 163 NIDEVLAAIRCLNQDLGIGQRRITVSTV-G--VPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLI--------- 230 (345)
T ss_pred CHHHHHHHHHHHhcccCCccCceEEECC-C--chhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhc---------
Confidence 3445566666533221133446777772 1 12334333333344443 234577889988763221111
Q ss_pred CccccccCCcHHHHHHHHHH-HHHCCC---eeEEeecCC--CHHHHHHHHHhc-CCCceEEeeccCCCCCc---------
Q 021693 128 GVLEIDTTISLETTWHAMED-LVSMGL---VRSIGISNY--DIFLTRDCLAYS-KVKPVVNQFETHPYFQR--------- 191 (309)
Q Consensus 128 ~~~~~~~~~~~~~~~~~L~~-l~~~Gk---ir~iGvs~~--~~~~l~~~~~~~-~~~~~~~q~~~~~~~~~--------- 191 (309)
+. ....+++++++++.+ +.+.|+ ++++=+.++ +.+.++++.+.. +++..++-++||++...
T Consensus 231 p~---~~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~La~~l~~l~~~VnLIPynp~~~~~~~~ps~e~ 307 (345)
T PRK14457 231 PS---AKNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEELANLLRGFQSHVNLIPYNPIDEVEFQRPSPKR 307 (345)
T ss_pred CC---ccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHHHHHHHhcCCCeEEEecCCCCCCCCCCCCCHHH
Confidence 11 114457888888766 455564 556555544 456666655544 24557888888875321
Q ss_pred -hHHHHHHHHcCCeEEEeccCCC
Q 021693 192 -DSLVKFCQKHGICVTAHTPLGG 213 (309)
Q Consensus 192 -~~ll~~~~~~gi~v~a~~pl~~ 213 (309)
....+..+++|+.+......+.
T Consensus 308 i~~f~~~L~~~Gi~vtvR~~~G~ 330 (345)
T PRK14457 308 IQAFQRVLEQRGVAVSVRASRGL 330 (345)
T ss_pred HHHHHHHHHHCCCeEEEeCCCCC
Confidence 2456667788999888776654
No 191
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=22.59 E-value=4.6e+02 Score=21.95 Aligned_cols=125 Identities=16% Similarity=0.177 Sum_probs=65.4
Q ss_pred ChhhHHHHHHHHHHcCCcEEecC----------CCCC-----CHHHHHHHHHHHHhcCCCCCccEEEEecCCCCC-cc-h
Q 021693 22 DESNIRDLIINAIKIGYRHIDCA----------ADYR-----NEAEVGEALAEAFSTGLVKREDLFITTKLWNSD-HG-H 84 (309)
Q Consensus 22 ~~~~~~~~l~~A~~~Gin~~DTA----------~~Yg-----sE~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~-~~-~ 84 (309)
+.++..+..+.+.+.|+..+|-- +.|| +-+.+-+.++...+ . .. +-+..|+.... .. .
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~-~-~~---~~v~vk~r~~~~~~~~ 139 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVRE-A-VP---IPVTVKIRLGWDDEEE 139 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHH-h-cC---CCEEEEEeeccCCchH
Confidence 46677788888888899988752 3466 23455565655211 1 11 34555542211 12 2
Q ss_pred HHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCCeeEEeecCC-C
Q 021693 85 VLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGISNY-D 163 (309)
Q Consensus 85 i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~-~ 163 (309)
..+ +-+.|+..|. |.+.+|....... ..+ ...|+.+.++++.-.+.-++.... +
T Consensus 140 ~~~-~~~~l~~~Gv---d~i~v~~~~~~~~-----------~~~----------~~~~~~~~~i~~~~~ipvi~~Ggi~~ 194 (231)
T cd02801 140 TLE-LAKALEDAGA---SALTVHGRTREQR-----------YSG----------PADWDYIAEIKEAVSIPVIANGDIFS 194 (231)
T ss_pred HHH-HHHHHHHhCC---CEEEECCCCHHHc-----------CCC----------CCCHHHHHHHHhCCCCeEEEeCCCCC
Confidence 222 2223445564 5556675432100 000 013456666777666666666655 5
Q ss_pred HHHHHHHHHhcCC
Q 021693 164 IFLTRDCLAYSKV 176 (309)
Q Consensus 164 ~~~l~~~~~~~~~ 176 (309)
.+.+.++++..+.
T Consensus 195 ~~d~~~~l~~~ga 207 (231)
T cd02801 195 LEDALRCLEQTGV 207 (231)
T ss_pred HHHHHHHHHhcCC
Confidence 6677777776443
No 192
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=22.49 E-value=2.2e+02 Score=25.61 Aligned_cols=136 Identities=18% Similarity=0.109 Sum_probs=74.8
Q ss_pred chHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCCeeEEeecCC
Q 021693 83 GHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGISNY 162 (309)
Q Consensus 83 ~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~ 162 (309)
+.+++.|.+-+++.|+|++=++..-+-..+.. . .....+.+++|++..+++.-. .
T Consensus 132 e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~--~-----------------~~~~~~t~~~l~~al~~~~~~------~ 186 (295)
T PF07994_consen 132 EQIREDIRDFKKENGLDRVVVVNVASTERYIP--V-----------------IPGVHDTLEALEKALDENDPE------I 186 (295)
T ss_dssp HHHHHHHHHHHHHTT-SCEEEEE-SSCC-S----------------------CCCCCSSHHHHHHHHHTT-TT------H
T ss_pred HHHHHHHHHHHHHhCCCcEEEEECCCCCCCCC--C-----------------CccccCCHHHHHHHhhcCCCc------C
Confidence 67889999999999988655544332211100 0 011223567777777765422 1
Q ss_pred CHHHH--HHHHHhcCCCceEEeeccCCCCCchHHHHHHHHcCCeEEEe---ccCCCCCCCCcccCCccCCCcHHHHHHHH
Q 021693 163 DIFLT--RDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAH---TPLGGAVANTEWFGTVSCLDDPVLKGLAE 237 (309)
Q Consensus 163 ~~~~l--~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~---~pl~~G~l~~~~~~~~~~~~~~~l~~ia~ 237 (309)
++..+ ..+++ .+ +.++-..-+.......+.+.++++|+.+..- +|++.++ .++.-.+.++|.
T Consensus 187 ~aS~~YA~AAl~-~g--~~fvN~tP~~~a~~P~l~ela~~~gvpi~GdD~KT~lAApl----------vlDLirl~~la~ 253 (295)
T PF07994_consen 187 SASMLYAYAALE-AG--VPFVNGTPSNIADDPALVELAEEKGVPIAGDDGKTPLAAPL----------VLDLIRLAKLAL 253 (295)
T ss_dssp HHHHHHHHHHHH-TT--EEEEE-SSSTTTTSHHHHHHHHHHTEEEEESSBS-HHHHHH----------HHHHHHHHHHHH
T ss_pred ChHHHHHHHHHH-CC--CCeEeccCccccCCHHHHHHHHHcCCCeecchHhhhhhhHH----------HHHHHHHHHHHH
Confidence 22222 12222 22 2333333333333468999999999998763 2333332 233356778888
Q ss_pred HcCCCHHHHHHHHHhcCCc
Q 021693 238 KYKRTVAQTVLRWGIQRNT 256 (309)
Q Consensus 238 ~~~~s~aq~al~~~l~~~~ 256 (309)
+.|..--+-.++|....|.
T Consensus 254 r~g~~Gv~~~ls~ffK~P~ 272 (295)
T PF07994_consen 254 RRGMGGVQEWLSFFFKSPM 272 (295)
T ss_dssp HTTS-EEHHHHHHHBSS-T
T ss_pred HcCCCChhHHHHHHhcCCC
Confidence 8888777888888887764
No 193
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=22.46 E-value=3.8e+02 Score=22.66 Aligned_cols=32 Identities=13% Similarity=0.041 Sum_probs=24.1
Q ss_pred CCeeEEeec-CCCHHHHHHHHHhcCCCceEEeecc
Q 021693 152 GLVRSIGIS-NYDIFLTRDCLAYSKVKPVVNQFET 185 (309)
Q Consensus 152 Gkir~iGvs-~~~~~~l~~~~~~~~~~~~~~q~~~ 185 (309)
+.+..+||. +-+++.+.++++..+ +.++|+.-
T Consensus 53 ~~i~~VgVf~~~~~~~i~~~~~~~~--~d~vQLHg 85 (210)
T PRK01222 53 PFVKVVGVFVNASDEEIDEIVETVP--LDLLQLHG 85 (210)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHhcC--CCEEEECC
Confidence 568899987 557778888887664 47888864
No 194
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=22.40 E-value=9.1e+02 Score=25.26 Aligned_cols=59 Identities=15% Similarity=0.083 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHC--CCeeEEeecCCCHHHHHHHHHhcCCCceEEeeccCCCCCc---hHHHHHHHHcCCe
Q 021693 140 TTWHAMEDLVSM--GLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQR---DSLVKFCQKHGIC 204 (309)
Q Consensus 140 ~~~~~L~~l~~~--Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~ll~~~~~~gi~ 204 (309)
+.+.+|.+..++ ..+++|-++|.....+.-+++ -|.++.+..+..+ .-+...|.+.||.
T Consensus 134 ~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrS------RCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 134 HAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLS------RCLQFNLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEECChhhccchhhh------heEEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 566777777766 589999999975444333333 2456666655443 2334446555553
No 195
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.25 E-value=7.1e+02 Score=23.99 Aligned_cols=78 Identities=14% Similarity=0.084 Sum_probs=46.5
Q ss_pred HHHHHHHHHcCCcEEe--------cCCCCC-------CHHHHHHHHHHHHhcCCCCCccEEEEecCCCCCcchHHHHHHH
Q 021693 27 RDLIINAIKIGYRHID--------CAADYR-------NEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKD 91 (309)
Q Consensus 27 ~~~l~~A~~~Gin~~D--------TA~~Yg-------sE~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~i~~~ve~ 91 (309)
.++++.|+|.|.-=+- |...|. .++..+.++.-+- .+..+.-+|.- ........+.+++
T Consensus 185 aallreAlEaGalGmS~~~~~~~~tgd~~p~~~l~~~t~el~~la~~va~-----ag~~iLqst~d-~~egaa~L~~l~~ 258 (579)
T COG3653 185 AALLREALEAGALGMSMDAAIDKLTGDRYPSRALPFATWELRRLAISVAR-----AGGRILQSTHD-RDEGAAALEALLE 258 (579)
T ss_pred HHHHHHHHhccccccchhhhcccccccccCCcccCcchHHHHHHHHHHHH-----hcCceeEeecc-ccchHHHHHHHHH
Confidence 6889999999876666 667774 2566666665321 23444444432 2233455566666
Q ss_pred HHHhhC-CCceeEEEeecCC
Q 021693 92 SLKKLQ-LDYLDLYLVHFPV 110 (309)
Q Consensus 92 SL~~L~-~d~iDl~~lH~p~ 110 (309)
+.++-+ ...+-+.+.|...
T Consensus 259 a~ri~~R~~~vr~v~s~~a~ 278 (579)
T COG3653 259 ASRIGNRRKGVRMVMSHSAD 278 (579)
T ss_pred HHHhcCcccCceEEEecccc
Confidence 665552 3356788888643
No 196
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=22.20 E-value=5.9e+02 Score=22.99 Aligned_cols=71 Identities=14% Similarity=0.105 Sum_probs=37.4
Q ss_pred HHHHHHHHHCCCe-eEEeecCCCHHHHHHHHHhcCCCceEEeeccCCCCCchHHHHHHHHcCCeEEEeccCCCC
Q 021693 142 WHAMEDLVSMGLV-RSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTPLGGA 214 (309)
Q Consensus 142 ~~~L~~l~~~Gki-r~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~G 214 (309)
++.+.+|++.-.+ -..|=|-++...+..+++... ..++|+.....-.-..+.+.|+.+||.++..+.+..+
T Consensus 206 ~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~a--~d~v~ik~~k~GGi~~~~~~a~~~gi~~~~~~~~es~ 277 (320)
T PRK02714 206 FDEMLQLSQDYQTPIALDESVANLAQLQQCYQQGW--RGIFVIKPAIAGSPSRLRQFCQQHPLDAVFSSVFETA 277 (320)
T ss_pred HHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCC--CCEEEEcchhcCCHHHHHHHHHHhCCCEEEEechhhH
Confidence 4555556544322 244555556666666655532 2445555443322245566777777777766544333
No 197
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=22.08 E-value=3.5e+02 Score=20.76 Aligned_cols=63 Identities=19% Similarity=0.147 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHCCCeeEEeecCCCHHHHHHHHHhcCCCceEEeeccCCCCCchHHHHHHHHcCCeEE
Q 021693 138 LETTWHAMEDLVSMGLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVT 206 (309)
Q Consensus 138 ~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~ 206 (309)
...+...|.-.++.|++. . ...+..++++......+++--..++..-...+..+|++++|+++
T Consensus 15 ~~ki~~lL~la~ragklv-~-----G~~~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~ 77 (122)
T PRK04175 15 AEKALEAVEKARDTGKIK-K-----GTNETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYV 77 (122)
T ss_pred HHHHHHHHHHHHHcCCEe-E-----cHHHHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEE
Confidence 345778888889999865 2 44566777777666656655554442222568889999999964
No 198
>PF14615 Rsa3: Ribosome-assembly protein 3
Probab=22.03 E-value=68 Score=20.26 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHcCCcEEe
Q 021693 25 NIRDLIINAIKIGYRHID 42 (309)
Q Consensus 25 ~~~~~l~~A~~~Gin~~D 42 (309)
....+|-.|++.|++.||
T Consensus 30 ~sl~~Li~aL~~G~~~F~ 47 (47)
T PF14615_consen 30 KSLPLLIDALQQGTDMFS 47 (47)
T ss_pred hhHHHHHHHHHhcccccC
Confidence 467889999999999885
No 199
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=21.89 E-value=1.9e+02 Score=21.96 Aligned_cols=52 Identities=19% Similarity=0.135 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCCeeEEee
Q 021693 85 VLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGI 159 (309)
Q Consensus 85 i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGv 159 (309)
-+..+++-|+.+.....|.+++..++.. .....+....++.|...| |+-+-+
T Consensus 50 ~R~~~~~ll~~~~~~~~d~ivv~~~~Rl----------------------~R~~~~~~~~~~~l~~~g-i~l~~~ 101 (137)
T cd00338 50 DRPGLQRLLADVKAGKIDVVLVEKLDRL----------------------SRNLVDLLELLELLEAHG-VRVVTA 101 (137)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEecchh----------------------hCCHHHHHHHHHHHHHCC-CEEEEe
Confidence 4667777777777778999999988764 233456777778887765 444433
No 200
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=21.82 E-value=5.4e+02 Score=22.45 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=32.6
Q ss_pred eecCCCCcccccceeccccChhhHHHHHHHHHHcCCcEEecCCCCCCH
Q 021693 3 ITLNNGFKMPIIGLGVWRMDESNIRDLIINAIKIGYRHIDCAADYRNE 50 (309)
Q Consensus 3 ~~l~tg~~vs~lg~G~~~~~~~~~~~~l~~A~~~Gin~~DTA~~YgsE 50 (309)
.+++.|.+.+.. .++.++..++++.-.+.||..|+......++
T Consensus 4 ~TlRDG~Q~~~~-----~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~ 46 (268)
T cd07940 4 TTLRDGEQTPGV-----SLTPEEKLEIARQLDELGVDVIEAGFPAASP 46 (268)
T ss_pred CCCCccccCCCC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCH
Confidence 567888887743 4567888999999999999999987443243
No 201
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=21.60 E-value=1.3e+02 Score=20.32 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=19.5
Q ss_pred CcHHHHHHHHHHHHHCCCeeEEeecCC
Q 021693 136 ISLETTWHAMEDLVSMGLVRSIGISNY 162 (309)
Q Consensus 136 ~~~~~~~~~L~~l~~~Gkir~iGvs~~ 162 (309)
.+...+-..|+.|++.|+|+.+...+.
T Consensus 26 ~s~~~ve~mL~~l~~kG~I~~~~~~~~ 52 (69)
T PF09012_consen 26 ISPEAVEAMLEQLIRKGYIRKVDMSSC 52 (69)
T ss_dssp --HHHHHHHHHHHHCCTSCEEEEEE--
T ss_pred cCHHHHHHHHHHHHHCCcEEEecCCCC
Confidence 345566678899999999999987764
No 202
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=21.22 E-value=4.7e+02 Score=23.52 Aligned_cols=65 Identities=15% Similarity=0.118 Sum_probs=40.0
Q ss_pred cHHHHHHHHHHHHHCCCeeEEeecCCCHHHHHHHHHh----cCCC--ceEEeeccCCCCCchHHHHHHHHcCCe
Q 021693 137 SLETTWHAMEDLVSMGLVRSIGISNYDIFLTRDCLAY----SKVK--PVVNQFETHPYFQRDSLVKFCQKHGIC 204 (309)
Q Consensus 137 ~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~----~~~~--~~~~q~~~~~~~~~~~ll~~~~~~gi~ 204 (309)
...++.+.|.+|++.|..-.|--+| +...+..+++. .... +..+..+..+ ....+...+++.|++
T Consensus 32 ~~~~~~e~L~~L~~~Gi~lai~S~n-~~~~a~~~l~~~~~~~~~~~~f~~~~~~~~p--k~~~i~~~~~~l~i~ 102 (320)
T TIGR01686 32 LHKTLQEKIKTLKKQGFLLALASKN-DEDDAKKVFERRKDFILQAEDFDARSINWGP--KSESLRKIAKKLNLG 102 (320)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEcCC-CHHHHHHHHHhCccccCcHHHeeEEEEecCc--hHHHHHHHHHHhCCC
Confidence 3568899999999999876665555 44566666665 3322 3444444321 235566667777654
No 203
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=21.13 E-value=6e+02 Score=23.27 Aligned_cols=60 Identities=17% Similarity=0.297 Sum_probs=37.7
Q ss_pred eeEEeecCCCHHHHHHHHHhcCCCceEEeeccCCCCCc---hHHHHHHHHcCCeEEEeccCCCC
Q 021693 154 VRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQR---DSLVKFCQKHGICVTAHTPLGGA 214 (309)
Q Consensus 154 ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~ll~~~~~~gi~v~a~~pl~~G 214 (309)
++..-+...+.+.+++++.. +.+.+++..+.|+.... +.+.+.|+++|+.++.=..++.+
T Consensus 116 ~~v~~vd~~d~~~l~~~i~~-~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~ 178 (366)
T PRK08247 116 VRFVYVNTASLKAIEQAITP-NTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTP 178 (366)
T ss_pred ceEEEECCCCHHHHHHhccc-CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccc
Confidence 34444444566677666543 23445555677775432 67899999999988886666444
No 204
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=21.11 E-value=3.8e+02 Score=25.14 Aligned_cols=57 Identities=19% Similarity=0.339 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHhcCCCCCccEEEEecCCC------------CCc----chHHHHHHHHHHhhCCCceeEEEeecCCC
Q 021693 49 NEAEVGEALAEAFSTGLVKREDLFITTKLWN------------SDH----GHVLEACKDSLKKLQLDYLDLYLVHFPVA 111 (309)
Q Consensus 49 sE~~lG~~l~~~~~~~~~~R~~~~i~tK~~~------------~~~----~~i~~~ve~SL~~L~~d~iDl~~lH~p~~ 111 (309)
++..+.+.+++ .+ +.=+||-||+-. .+. ..+++.+.+.|++-|+...-+|++-+.+.
T Consensus 129 ndv~La~~i~~---~g---K~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl 201 (376)
T PF05049_consen 129 NDVQLAKEIQR---MG---KKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDL 201 (376)
T ss_dssp HHHHHHHHHHH---TT----EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTT
T ss_pred hhHHHHHHHHH---cC---CcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCc
Confidence 46667788877 32 445689999821 111 67889999999999999999999987654
No 205
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=21.07 E-value=5.6e+02 Score=22.35 Aligned_cols=59 Identities=14% Similarity=0.071 Sum_probs=40.5
Q ss_pred EEeecCCCHHHHHHHHHhcCCCceEEeeccCCCC-CchHHHHHHHHcCCeEEEeccCCCC
Q 021693 156 SIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYF-QRDSLVKFCQKHGICVTAHTPLGGA 214 (309)
Q Consensus 156 ~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~-~~~~ll~~~~~~gi~v~a~~pl~~G 214 (309)
-|.|-++++..++++++.+.-...+|-+....++ ....+++.++++|..++.+..-..|
T Consensus 72 piSIDT~~~~v~e~aL~~~~G~~iINsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~~~g 131 (252)
T cd00740 72 PLMLDSTNWEVIEAGLKCCQGKCVVNSINLEDGEERFLKVARLAKEHGAAVVVLAFDEQG 131 (252)
T ss_pred cEEeeCCcHHHHHHHHhhCCCCcEEEeCCCCCCccccHHHHHHHHHhCCCEEEeccCCCC
Confidence 3888999999999999874223355544432211 2357889999999998888654444
No 206
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=21.07 E-value=3.4e+02 Score=25.00 Aligned_cols=71 Identities=17% Similarity=-0.003 Sum_probs=41.5
Q ss_pred HHHHHHHHHCCCee-EEeecCCCHHHHHHHHHhcCCCceEEeeccCCCCC---chHHHHHHHHcCCeEEEeccCCCC
Q 021693 142 WHAMEDLVSMGLVR-SIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQ---RDSLVKFCQKHGICVTAHTPLGGA 214 (309)
Q Consensus 142 ~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~---~~~ll~~~~~~gi~v~a~~pl~~G 214 (309)
++.+.+|++...+. ..|=|-++...+..+++.... +++|+.....-. -..+...|+.+|+.++..+.+.++
T Consensus 227 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~--d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s~ 301 (368)
T TIGR02534 227 REALARLTRRFNVPIMADESVTGPADALAIAKASAA--DVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEGP 301 (368)
T ss_pred HHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCC--CEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhhH
Confidence 55666666665444 556566677777776665433 455655543211 245777778888887665444333
No 207
>PF04414 tRNA_deacylase: D-aminoacyl-tRNA deacylase; InterPro: IPR007508 D-aminoacyl-tRNA deacylases hydrolyse the ester bond between the polynucleotide and the D-amino acid, thereby preventing the accumulation of such mis-acylated and metabolically inactive tRNA molecules. Several aminoacyl-tRNA synthetases have the ability to transfer the D-isomer of their amino acid onto their cognate tRNA. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1YQE_A 2GFQ_B.
Probab=20.98 E-value=2.8e+02 Score=23.73 Aligned_cols=78 Identities=17% Similarity=0.166 Sum_probs=47.3
Q ss_pred cccccceeccccChhhHHHHHHHHHHcCCcEEecCCCCC----CHHHHHHHHHHHHhcCCCCCccEEEEecCCCCCcchH
Q 021693 10 KMPIIGLGVWRMDESNIRDLIINAIKIGYRHIDCAADYR----NEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHV 85 (309)
Q Consensus 10 ~vs~lg~G~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg----sE~~lG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~i 85 (309)
..+.||||+...... .-+.+++.++.+=...+.|- ++.++-+++.+ . .-+.++|--| .-....
T Consensus 130 ~~~~ig~GG~HYapr----~t~~~l~~~~~~GHi~~ky~l~~l~~~~l~~a~~~---s---~~~~a~id~K---~l~~~~ 196 (213)
T PF04414_consen 130 CPVAIGFGGGHYAPR----FTKLALETEYAFGHIIPKYALDELDEDVLRQAIEK---S---GADVAIIDWK---SLKSED 196 (213)
T ss_dssp -EEEEEE-S-TT-HH----HHHHHHHCSEEEEEEE-GGGGGG--HHHHHHHHCH---C---T-SEEEEETT---TS-HHH
T ss_pred cceeEEecCcccchh----hhhhhhcCCeEEEeeccCcchhhcCHHHHHHHHHh---C---CCcEEEEecC---CCCHHH
Confidence 378899998775543 34667788888777788883 45666666655 2 1222444444 334788
Q ss_pred HHHHHHHHHhhCCCc
Q 021693 86 LEACKDSLKKLQLDY 100 (309)
Q Consensus 86 ~~~ve~SL~~L~~d~ 100 (309)
++.+++-|+.||++.
T Consensus 197 r~~i~~~l~~~gi~v 211 (213)
T PF04414_consen 197 RRRIEELLEELGIEV 211 (213)
T ss_dssp HHHHHHHHHHHT-EE
T ss_pred HHHHHHHHHHcCCee
Confidence 999999999998753
No 208
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=20.91 E-value=6.5e+02 Score=23.00 Aligned_cols=60 Identities=8% Similarity=-0.140 Sum_probs=40.1
Q ss_pred HCCCeeEEeecCCCHHHHHHHHHhc-----CCCceEEeeccCCCCCchHHHHHHHHcCCeEEEec
Q 021693 150 SMGLVRSIGISNYDIFLTRDCLAYS-----KVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHT 209 (309)
Q Consensus 150 ~~Gkir~iGvs~~~~~~l~~~~~~~-----~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~ 209 (309)
+.|=+..||....+++++++.++.. +-|+-++-+.+.......+.++.|.+.++.++..+
T Consensus 25 ~AGgLG~la~~~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~ 89 (320)
T cd04743 25 EGGGLPFIALALMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIA 89 (320)
T ss_pred hCCccccCCCCCCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEc
Confidence 6688899999999999887776544 22333443332221113578999999999988764
No 209
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=20.86 E-value=5.4e+02 Score=22.04 Aligned_cols=88 Identities=13% Similarity=0.082 Sum_probs=53.7
Q ss_pred CCccEEEEecCCCCCcchHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHH
Q 021693 67 KREDLFITTKLWNSDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAME 146 (309)
Q Consensus 67 ~R~~~~i~tK~~~~~~~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 146 (309)
+.++++|-...++.+.+.......+-...++.+. -++.+.||.......+..+ .... ...-....+.|+
T Consensus 16 ~~~~vlvfVHGyn~~f~~a~~r~aql~~~~~~~~-~~i~FsWPS~g~~~~Y~~d------~~~a----~~s~~~l~~~L~ 84 (233)
T PF05990_consen 16 PDKEVLVFVHGYNNSFEDALRRAAQLAHDLGFPG-VVILFSWPSDGSLLGYFYD------RESA----RFSGPALARFLR 84 (233)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCc-eEEEEEcCCCCChhhhhhh------hhhH----HHHHHHHHHHHH
Confidence 6788999999888887666666666777777655 7788999976432111111 0000 122334456677
Q ss_pred HHHHCCCeeEEeecCCCHH
Q 021693 147 DLVSMGLVRSIGISNYDIF 165 (309)
Q Consensus 147 ~l~~~Gkir~iGvs~~~~~ 165 (309)
.|.+....+.|=+-.|+..
T Consensus 85 ~L~~~~~~~~I~ilaHSMG 103 (233)
T PF05990_consen 85 DLARAPGIKRIHILAHSMG 103 (233)
T ss_pred HHHhccCCceEEEEEeCch
Confidence 7777755556666666543
No 210
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=20.83 E-value=6.2e+02 Score=22.74 Aligned_cols=74 Identities=12% Similarity=0.024 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHCCCe-eEEeecCCCHHHHHHHHHh---cCCCceEEeeccCCCCCchHHHHH----HHHc-CCeEEEec-
Q 021693 140 TTWHAMEDLVSMGLV-RSIGISNYDIFLTRDCLAY---SKVKPVVNQFETHPYFQRDSLVKF----CQKH-GICVTAHT- 209 (309)
Q Consensus 140 ~~~~~L~~l~~~Gki-r~iGvs~~~~~~l~~~~~~---~~~~~~~~q~~~~~~~~~~~ll~~----~~~~-gi~v~a~~- 209 (309)
+++++..+.. .|++ -.+|++..+.....++.+. .+.+-.++..++.....+++++++ |... +++++.|.
T Consensus 65 ~v~~~~~~~~-~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~ 143 (309)
T cd00952 65 AFVATVVETV-AGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYAN 143 (309)
T ss_pred HHHHHHHHHh-CCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcC
Confidence 4444444433 3544 4678888777654444433 344444444443322234566554 5566 69999995
Q ss_pred cCCCC
Q 021693 210 PLGGA 214 (309)
Q Consensus 210 pl~~G 214 (309)
|-..|
T Consensus 144 P~~tg 148 (309)
T cd00952 144 PEAFK 148 (309)
T ss_pred chhcC
Confidence 43334
No 211
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=20.73 E-value=2.2e+02 Score=21.88 Aligned_cols=48 Identities=17% Similarity=0.041 Sum_probs=31.2
Q ss_pred CHHHHHHHHHhcC-CCceEEeeccCCCCCchHHHHHHHHcCCeEEEecc
Q 021693 163 DIFLTRDCLAYSK-VKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTP 210 (309)
Q Consensus 163 ~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~p 210 (309)
+++.++.+++.+. +.+.++-.-...-.....+...|++.||++-.|+.
T Consensus 56 t~e~f~~vl~~a~~~EilliGTG~~~rf~p~~l~aal~~~gIsve~Mst 104 (127)
T COG3737 56 TPEDFERVLAEAPDVEILLIGTGARLRFPPPKLRAALKAAGISVEPMST 104 (127)
T ss_pred CHHHHHHHHhcCCCceEEEEecCccccCCCHHHHHHHHHcCCccccccc
Confidence 3556666666654 33344444444444457899999999999987774
No 212
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=20.56 E-value=4.3e+02 Score=20.86 Aligned_cols=45 Identities=4% Similarity=0.115 Sum_probs=30.5
Q ss_pred CCccEEEEecCCCCC-cchHHHHHHHHHHhhC--CCceeEEEeecCCC
Q 021693 67 KREDLFITTKLWNSD-HGHVLEACKDSLKKLQ--LDYLDLYLVHFPVA 111 (309)
Q Consensus 67 ~R~~~~i~tK~~~~~-~~~i~~~ve~SL~~L~--~d~iDl~~lH~p~~ 111 (309)
.|=-+.|+-|++.-- ...+++.+.++++.+. ....|++++..+..
T Consensus 46 ~RlG~sVSKKvg~AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~ 93 (138)
T PRK00730 46 CKVGITVSKKFGKAHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNS 93 (138)
T ss_pred ceEEEEEecccccchhHHHHHHHHHHHHHHhhcccCCceEEEEecccc
Confidence 466677777865422 2677777777777663 34689999987654
No 213
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=20.54 E-value=88 Score=24.45 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=15.7
Q ss_pred HHHHHHHHHHcCCcEEecC
Q 021693 26 IRDLIINAIKIGYRHIDCA 44 (309)
Q Consensus 26 ~~~~l~~A~~~Gin~~DTA 44 (309)
....+..+++.|+|+||--
T Consensus 30 q~~~i~~qL~~GvR~~dir 48 (135)
T smart00148 30 SVEGYIQALDHGCRCVELD 48 (135)
T ss_pred cHHHHHHHHHhCCCEEEEE
Confidence 3567899999999999864
No 214
>KOG1056 consensus Glutamate-gated metabotropic ion channel receptor subunit GRM2 and related subunits, G-protein coupled receptor superfamily [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=20.50 E-value=8.7e+02 Score=25.64 Aligned_cols=71 Identities=18% Similarity=0.151 Sum_probs=47.0
Q ss_pred ChhhHHHHHHHHHHcCCcEEecCCCCCCHHHHH-HHHHHHHhcCCCCCccEEEEecCCCCCcchHHHHHHHHHHhhCC
Q 021693 22 DESNIRDLIINAIKIGYRHIDCAADYRNEAEVG-EALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKKLQL 98 (309)
Q Consensus 22 ~~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~lG-~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~i~~~ve~SL~~L~~ 98 (309)
|.-++.++++..-..|.|++-|...-|++...| ++++.. . -.|+ +.|+.+...... ...+.++.-+++|.-
T Consensus 178 D~~Qa~Am~~il~~f~W~yVstv~s~~dYGE~Gieaf~~~---a-~~~~-iCIa~s~ki~~~-~~~~~~~~~l~kl~~ 249 (878)
T KOG1056|consen 178 DVFQAQAMVDILKKFNWNYVSTVASEGDYGESGIEAFKEE---A-AERG-ICIAFSEKIYQL-SIEQEFDCVLRKLLE 249 (878)
T ss_pred hHHHHHHHHHHHHHhCeeEeeehhcCccchhhhHHHHHHh---H-HhcC-ceEEehhhcccc-cchhHHHHHHHHHhh
Confidence 455788888888889999998876555432333 444441 1 1355 999998544443 777778888887764
No 215
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=20.49 E-value=7.1e+02 Score=23.33 Aligned_cols=73 Identities=18% Similarity=0.204 Sum_probs=44.0
Q ss_pred HHHHHHHHHHCCCeeEEeecCCCHHHHHHHHHhcCCCceEEeeccCCCCC---chHHHHHHHHcCCeEEEeccCCCC
Q 021693 141 TWHAMEDLVSMGLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQ---RDSLVKFCQKHGICVTAHTPLGGA 214 (309)
Q Consensus 141 ~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~---~~~ll~~~~~~gi~v~a~~pl~~G 214 (309)
++..+..+.+.+.++.+-+...+.+.+++++.. ..+..++..+-|+.-. -+++.+.|+++|+.++.=..++.+
T Consensus 112 t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~-~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~ 187 (405)
T PRK08776 112 SWRLFNALAKKGHFALITADLTDPRSLADALAQ-SPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSP 187 (405)
T ss_pred HHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCccc
Confidence 444455544445566666655567777766542 2334455545555332 267899999999988886665544
No 216
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=20.42 E-value=5.2e+02 Score=23.56 Aligned_cols=71 Identities=14% Similarity=0.061 Sum_probs=46.6
Q ss_pred HHHHHHHHHHCCCe-eEEeecCCCHHHHHHHHHhcCCCceEEeeccCCCCC---chHHHHHHHHcCCeEEEeccCCC
Q 021693 141 TWHAMEDLVSMGLV-RSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQ---RDSLVKFCQKHGICVTAHTPLGG 213 (309)
Q Consensus 141 ~~~~L~~l~~~Gki-r~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~---~~~ll~~~~~~gi~v~a~~pl~~ 213 (309)
-++.+.+|++.-.+ -..|=|.++...+..+++...+ .++|+.....-. -..+...|+.+|+.++..+....
T Consensus 216 d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~--d~~~ik~~~~GGit~~~~i~~~A~~~gi~~~~g~~~es 290 (354)
T cd03317 216 DLIDHAELQKLLKTPICLDESIQSAEDARKAIELGAC--KIINIKPGRVGGLTEALKIHDLCQEHGIPVWCGGMLES 290 (354)
T ss_pred HHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCC--CEEEecccccCCHHHHHHHHHHHHHcCCcEEecCcccc
Confidence 35667777665332 3566777888888888776543 566766654322 25788899999999876554433
No 217
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=20.39 E-value=1.4e+02 Score=27.29 Aligned_cols=71 Identities=13% Similarity=0.097 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHCCCeeEEeecCCCHHH-----HHHHHHhc----CCCce----E------EeeccCCCCCchHHHHHH
Q 021693 138 LETTWHAMEDLVSMGLVRSIGISNYDIFL-----TRDCLAYS----KVKPV----V------NQFETHPYFQRDSLVKFC 198 (309)
Q Consensus 138 ~~~~~~~L~~l~~~Gkir~iGvs~~~~~~-----l~~~~~~~----~~~~~----~------~q~~~~~~~~~~~ll~~~ 198 (309)
..+.++.|+++.+.++|+.+-+-.|.+.+ ++++..+. +..+. . .|-.+. ...-+.+++.|
T Consensus 94 ~~~~~~~~~~~~~~~~v~lvs~~dH~pg~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iv~~A 172 (325)
T cd01306 94 DPAVLPELESLMADPRVHLVSLMDHTPGQRQFRDLEKYREYYAKKYGLSDEEVEEAILERKARAAAYA-PANRSELAALA 172 (325)
T ss_pred CccHHHHHHHHhcCCCcCEEEEeCCCCccccccCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcC-HHHHHHHHHHH
Confidence 45688999999999999999999998764 33333332 11110 0 000110 00115789999
Q ss_pred HHcCCeEEEec
Q 021693 199 QKHGICVTAHT 209 (309)
Q Consensus 199 ~~~gi~v~a~~ 209 (309)
+++|+.+.++.
T Consensus 173 ~~~gl~vasH~ 183 (325)
T cd01306 173 RARGIPLASHD 183 (325)
T ss_pred HHCCCcEEEec
Confidence 99999998876
No 218
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=20.24 E-value=2.7e+02 Score=26.03 Aligned_cols=46 Identities=13% Similarity=0.090 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHhcC---CCceEEeeccCCCCCc-------hHHHHHHHHcCCeEEE
Q 021693 162 YDIFLTRDCLAYSK---VKPVVNQFETHPYFQR-------DSLVKFCQKHGICVTA 207 (309)
Q Consensus 162 ~~~~~l~~~~~~~~---~~~~~~q~~~~~~~~~-------~~ll~~~~~~gi~v~a 207 (309)
++.+.++++++..+ ++..+.-+-.|....+ +++.+.|++++|.++-
T Consensus 169 ~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~ 224 (471)
T COG3033 169 FDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVM 224 (471)
T ss_pred cCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEe
Confidence 44455555555443 4444444444443332 5778888888888764
No 219
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=20.23 E-value=2.8e+02 Score=24.43 Aligned_cols=23 Identities=17% Similarity=-0.019 Sum_probs=17.1
Q ss_pred CCcHHHHHHHHHcCCCHHHHHHH
Q 021693 227 LDDPVLKGLAEKYKRTVAQTVLR 249 (309)
Q Consensus 227 ~~~~~l~~ia~~~~~s~aq~al~ 249 (309)
....+++.+|+=.|+++.+++-.
T Consensus 223 ~v~~v~~~iAelk~~~~eeva~~ 245 (256)
T COG0084 223 YVRHVAEKLAELKGISAEEVAEI 245 (256)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHH
Confidence 34467888888889998887643
No 220
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=20.17 E-value=6.1e+02 Score=24.15 Aligned_cols=64 Identities=16% Similarity=0.202 Sum_probs=43.2
Q ss_pred HHHHHCCCeeEEeecCCCHHHHHHHHHhcC------CCceEEeeccCCCCC--chHHHHHHHHcCCeEEEecc
Q 021693 146 EDLVSMGLVRSIGISNYDIFLTRDCLAYSK------VKPVVNQFETHPYFQ--RDSLVKFCQKHGICVTAHTP 210 (309)
Q Consensus 146 ~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~------~~~~~~q~~~~~~~~--~~~ll~~~~~~gi~v~a~~p 210 (309)
..+-+.|-+..+|..+.+++++++.+...+ -++-+|-+ .++-.+ +..+++.|.++|+.++..+-
T Consensus 32 aAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~~~~~e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 32 VAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPDEPELEEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred HHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCCCchhHHHHHHHHHHcCCCEEEecc
Confidence 344578999999999999998887776552 23333332 222122 25689999999998776553
No 221
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=20.16 E-value=6.6e+02 Score=22.77 Aligned_cols=75 Identities=17% Similarity=0.108 Sum_probs=50.3
Q ss_pred CCccEEEEecCCCCC-cchHHHHHHHHHHhhCCCceeEEEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHH
Q 021693 67 KREDLFITTKLWNSD-HGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAM 145 (309)
Q Consensus 67 ~R~~~~i~tK~~~~~-~~~i~~~ve~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 145 (309)
.++.+.++.|..... ...+.+.+++..+++|. ++.+ ..|.. ....+..+.+
T Consensus 22 ~~~~i~~v~k~~~~pf~~~~~~Gi~~aa~~~G~---~v~~-~~~~~------------------------~d~~~q~~~i 73 (336)
T PRK15408 22 AAERIAFIPKLVGVGFFTSGGNGAKEAGKELGV---DVTY-DGPTE------------------------PSVSGQVQLI 73 (336)
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHHHHHHhCC---EEEE-ECCCC------------------------CCHHHHHHHH
Confidence 567888888865433 37888999999999984 4443 33322 1244566888
Q ss_pred HHHHHCCCeeEEeecCCCHHHHHHH
Q 021693 146 EDLVSMGLVRSIGISNYDIFLTRDC 170 (309)
Q Consensus 146 ~~l~~~Gkir~iGvs~~~~~~l~~~ 170 (309)
+.+.++| +..|-++..+...+...
T Consensus 74 ~~li~~~-vdgIiv~~~d~~al~~~ 97 (336)
T PRK15408 74 NNFVNQG-YNAIIVSAVSPDGLCPA 97 (336)
T ss_pred HHHHHcC-CCEEEEecCCHHHHHHH
Confidence 8888765 88888887775533333
No 222
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=20.09 E-value=6.8e+02 Score=24.22 Aligned_cols=116 Identities=6% Similarity=0.018 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCceeE---------EEeecCCCCCCCCCCCCCCCCCcCCccccccCCcHHHHHHHHHHHHHCCCeeE
Q 021693 86 LEACKDSLKKLQLDYLDL---------YLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRS 156 (309)
Q Consensus 86 ~~~ve~SL~~L~~d~iDl---------~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~ 156 (309)
...+-+.|.++|++.|.+ +-+.++++. +.++.+.+....-++..
T Consensus 27 kl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~---------------------------e~l~~l~~~~~~~~l~~ 79 (467)
T PRK14041 27 MLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPW---------------------------ERLKEIRKRLKNTKIQM 79 (467)
T ss_pred HHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHH---------------------------HHHHHHHHhCCCCEEEE
Q ss_pred -------EeecCCCHHHHHHHHHhc---CCCceEEeeccCCCCCchHHHHHHHHcCCeEEEeccCCCCCCCCcccCCccC
Q 021693 157 -------IGISNYDIFLTRDCLAYS---KVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTPLGGAVANTEWFGTVSC 226 (309)
Q Consensus 157 -------iGvs~~~~~~l~~~~~~~---~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~ 226 (309)
+|..++..+.++..++.+ +++..-+-...|-...-...+++++++|..+.+.-....+ +.
T Consensus 80 l~r~~N~~G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~----------p~ 149 (467)
T PRK14041 80 LLRGQNLVGYRHYADDVVELFVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTVS----------PV 149 (467)
T ss_pred EeccccccCcccccchhhHHHHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEeccC----------CC
Q ss_pred CCcHHHHHHHHH
Q 021693 227 LDDPVLKGLAEK 238 (309)
Q Consensus 227 ~~~~~l~~ia~~ 238 (309)
...+.+.+++++
T Consensus 150 ~t~e~~~~~a~~ 161 (467)
T PRK14041 150 HTLEYYLEFARE 161 (467)
T ss_pred CCHHHHHHHHHH
Done!