BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021694
         (309 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|G2TRT7|YCYH_SCHPO Putative uncharacterized transmembrane protein C1235.17
           OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
           GN=SPCC1235.17 PE=4 SV=1
          Length = 150

 Score = 32.3 bits (72), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 3/95 (3%)

Query: 200 GHRQVRPSDSSSFTFIYSVCLLLAAYL-MGVMLVEDLVDLNHTVIIIFTVILFVLLFIPI 258
           G  +   +D SS+  + SV L L  Y+ +G M++  +    H + +  T+  + +  + I
Sbjct: 35  GQNKEGNADKSSYFKVVSVILTLRGYVQLGYMVIHLVTHTLHCITLYITITHYTIYIVNI 94

Query: 259 VIPIILSFFLERTDPAEEALLSKPENMEPGKSNQE 293
           VI + L  ++ER   +   L+   EN+   K  ++
Sbjct: 95  VIQLWLYRYIERFFYS--LLVEYCENLCDSKEKRK 127


>sp|Q96TW9|MCH1_HANAN Probable transporter MCH1 OS=Hansenula anomala GN=MCH1 PE=3 SV=1
          Length = 489

 Score = 32.0 bits (71), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 14/143 (9%)

Query: 28  CAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLG-----DSVGFLAGSLCEVLPIWGA 82
           CAG   LF   +PV++  L+Y Q QI  +G    +G       +G+LA   C      G 
Sbjct: 41  CAGSVLLFALFTPVLQHQLHYTQFQINIIGSFTSIGMYLPLPVLGYLAD--CH-----GP 93

Query: 83  LLVGALQN-FIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK 141
           +L+  +   F   G+  L  T        W + I   +     +     AL++C + +PK
Sbjct: 94  VLLSVISVLFFSPGYT-LAATVVQNDWSFWYLAISFGLIGCATSALYFTALLTCAKIYPK 152

Query: 142 SRGPVVGILKGFAGLGGAILTQV 164
           S+G  +       GL   I ++V
Sbjct: 153 SKGLTISAPVTCYGLSSLIGSRV 175


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.327    0.143    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,146,528
Number of Sequences: 539616
Number of extensions: 4791091
Number of successful extensions: 15468
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 15464
Number of HSP's gapped (non-prelim): 20
length of query: 309
length of database: 191,569,459
effective HSP length: 117
effective length of query: 192
effective length of database: 128,434,387
effective search space: 24659402304
effective search space used: 24659402304
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)