Query 021694
Match_columns 309
No_of_seqs 283 out of 1391
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 07:55:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021694.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021694hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 99.7 2.5E-14 8.5E-19 135.5 26.2 154 12-169 21-177 (438)
2 1pw4_A Glycerol-3-phosphate tr 99.6 8.8E-14 3E-18 132.0 17.1 183 12-201 23-213 (451)
3 2gfp_A EMRD, multidrug resista 99.5 9.8E-13 3.3E-17 122.5 20.8 132 32-170 16-149 (375)
4 4aps_A DI-OR tripeptide H+ sym 99.4 2.9E-12 1E-16 123.5 17.9 125 39-170 37-171 (491)
5 2xut_A Proton/peptide symporte 99.3 4.4E-11 1.5E-15 116.3 17.9 126 39-170 36-173 (524)
6 4gc0_A D-xylose-proton symport 99.2 7.5E-11 2.5E-15 113.4 11.7 162 39-200 35-225 (491)
7 1pw4_A Glycerol-3-phosphate tr 99.1 4.6E-10 1.6E-14 106.2 10.7 135 32-171 268-409 (451)
8 4gc0_A D-xylose-proton symport 98.9 5E-08 1.7E-12 93.6 19.2 133 32-166 293-427 (491)
9 3o7q_A L-fucose-proton symport 98.9 1.7E-08 6E-13 95.1 15.7 131 31-170 273-406 (438)
10 2cfq_A Lactose permease; trans 98.8 9.2E-10 3.1E-14 104.8 3.5 131 35-170 27-163 (417)
11 4aps_A DI-OR tripeptide H+ sym 98.8 1E-08 3.4E-13 98.6 10.4 155 42-196 310-473 (491)
12 2cfq_A Lactose permease; trans 98.8 5.7E-08 1.9E-12 92.3 13.7 111 53-170 261-374 (417)
13 2gfp_A EMRD, multidrug resista 98.3 4.4E-08 1.5E-12 90.8 -1.3 130 34-168 217-349 (375)
14 2xut_A Proton/peptide symporte 97.8 4.2E-05 1.4E-09 73.9 8.8 104 67-170 352-466 (524)
15 2knc_A Integrin alpha-IIB; tra 41.0 55 0.0019 21.8 4.9 35 238-272 10-44 (54)
16 2l8s_A Integrin alpha-1; trans 36.5 61 0.0021 21.6 4.5 29 247-275 16-44 (54)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.67 E-value=2.5e-14 Score=135.46 Aligned_cols=154 Identities=15% Similarity=0.113 Sum_probs=125.1
Q ss_pred ccchHHHHHHHHHHHHHhhh-hhhHHhhHHHHHHhhCCCHHHHHHHHHHHHHHhhh-hhhhhhhccccchHHHHHHHHHH
Q 021694 12 FNNRWLVFVAAMWIQSCAGI-GYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQ 89 (309)
Q Consensus 12 ~~~rw~~l~~~~l~~~~~g~-~Y~fsvys~~l~~~lg~s~~~~~~i~~~~~vg~~~-~~~~G~L~Dr~Gpr~vllig~~l 89 (309)
.+++|..+.....+....+. .+.++.+.|.+++++|+|..+.+.+.+...++..+ .++.|++.||+|+|++++++.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL 100 (438)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence 34556655554444444443 46777888999999999999999998888888876 66999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHhchhhhhhhHHHHHhhhcC-CCCCcchhhhhhhhhhhHHHHHHHHHHH
Q 021694 90 NFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMI 168 (309)
Q Consensus 90 ~~~gy~l~~l~~~~~i~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~FP-~~RG~avGi~~~~~GLg~ai~~~i~~~~ 168 (309)
..++..+.+..... +++|.+.+...+.|.|.+..+++....+.+++| ++|+.+.|+..+..++|..+.+.+...+
T Consensus 101 ~~~~~~~~~~~~~~----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 176 (438)
T 3o7q_A 101 YALGAALFWPAAEI----MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_dssp HHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHhcccc----ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888777443221 368888888889999999999999999999999 6799999999999999999888776655
Q ss_pred c
Q 021694 169 H 169 (309)
Q Consensus 169 ~ 169 (309)
.
T Consensus 177 ~ 177 (438)
T 3o7q_A 177 I 177 (438)
T ss_dssp H
T ss_pred H
Confidence 4
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.55 E-value=8.8e-14 Score=131.99 Aligned_cols=183 Identities=16% Similarity=0.184 Sum_probs=136.4
Q ss_pred ccchHHHHHHHHHHHHHhh-hhhhHHhhHHHHHHhhCCCHHHHHHHHHHHHHHhhh-hhhhhhhccccchHHHHHHHHHH
Q 021694 12 FNNRWLVFVAAMWIQSCAG-IGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQ 89 (309)
Q Consensus 12 ~~~rw~~l~~~~l~~~~~g-~~Y~fsvys~~l~~~lg~s~~~~~~i~~~~~vg~~~-~~~~G~L~Dr~Gpr~vllig~~l 89 (309)
.+.+|..+....+..+..+ ..+.++.+.+.+.+++ +|..+.+.+.+...++..+ .++.|++.||+|+|++++++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 3445666666555554444 4667778888888889 9999999998888888877 66999999999999999999999
Q ss_pred HHHHHHHHHHHH--hCCCCChhHHHHHHHHHHHHhchhhhhhhHHHHHhhhcC-CCCCcchhhhhhhhhhhHHHHHHHHH
Q 021694 90 NFIGYGWVWLIV--TGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYT 166 (309)
Q Consensus 90 ~~~gy~l~~l~~--~~~i~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~FP-~~RG~avGi~~~~~GLg~ai~~~i~~ 166 (309)
..++..+..+.. .. +++.+.+...+.|.+.+..+++....+.+++| ++||.+.|+.....++|..+.+.+..
T Consensus 102 ~~~~~~~~~~~~~~~~-----~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 176 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATS-----SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 176 (451)
T ss_dssp HHHHHHHHHHCHHHHS-----SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHHhhhhccc-----cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 998887775411 22 46777777888888999888899999999999 66999999999999898888776654
Q ss_pred HHcc--C-ChHHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 021694 167 MIHA--P-DHANLIFMVAVGPAMVVIALMFIIRPVGGH 201 (309)
Q Consensus 167 ~~~~--~-~~~~~~l~la~~~~~v~l~~~~~ir~~p~~ 201 (309)
.+.+ + ++..| +..++...+..++..++++++|..
T Consensus 177 ~l~~~~g~w~~~f-~~~~~~~~~~~~~~~~~~~~~~~~ 213 (451)
T 1pw4_A 177 LGMAWFNDWHAAL-YMPAFCAILVALFAFAMMRDTPQS 213 (451)
T ss_dssp HHHHHTCCSTTCT-HHHHHHHHHHHHHHHHHCCCSSTT
T ss_pred HHHHHhccHHHHH-HHHHHHHHHHHHHHHhhccCCHhh
Confidence 4332 2 33333 344544444455556677765543
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.52 E-value=9.8e-13 Score=122.47 Aligned_cols=132 Identities=10% Similarity=-0.023 Sum_probs=110.4
Q ss_pred hhhHHhhHHHHHHhhCCCHHHHHHHHHHHHHHhhh-hhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHhCCCCChhH
Q 021694 32 GYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPL 110 (309)
Q Consensus 32 ~Y~fsvys~~l~~~lg~s~~~~~~i~~~~~vg~~~-~~~~G~L~Dr~Gpr~vllig~~l~~~gy~l~~l~~~~~i~~~s~ 110 (309)
...+..+.|.+++++|+|..+.+.+.+...++..+ .++.|++.||+|+|+++.++.++..++..+.... +++
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~ 88 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-------SSL 88 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-------HHH
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-------ccH
Confidence 44455566778899999999999998888888766 6699999999999999999999998888776542 368
Q ss_pred HHHHHHHHHHHhchhhhhhhHHHHHhhhcC-CCCCcchhhhhhhhhhhHHHHHHHHHHHcc
Q 021694 111 WAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIHA 170 (309)
Q Consensus 111 ~~l~~~~~l~g~g~~~~~~~~~~~~~~~FP-~~RG~avGi~~~~~GLg~ai~~~i~~~~~~ 170 (309)
+.+.+...+.|.+.+..++.......+++| ++|+.+.|+.....++|..+.+.+...+.+
T Consensus 89 ~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 149 (375)
T 2gfp_A 89 TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT 149 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 888888888888999888888899999998 779999999999998988887777655443
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.44 E-value=2.9e-12 Score=123.48 Aligned_cols=125 Identities=13% Similarity=0.034 Sum_probs=100.6
Q ss_pred HHHHHHh-----hCCCHHHHHHHHHHHHHHhhh-hhhhhhhccc-cchHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHH
Q 021694 39 SPVIKSS-----LNYNQKQIARLGVAKDLGDSV-GFLAGSLCEV-LPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLW 111 (309)
Q Consensus 39 s~~l~~~-----lg~s~~~~~~i~~~~~vg~~~-~~~~G~L~Dr-~Gpr~vllig~~l~~~gy~l~~l~~~~~i~~~s~~ 111 (309)
.+.+++. +|+|..+.+.+.+...++..+ .+++|++.|| +|+|+++.++.++..++..+..+ . ++++
T Consensus 37 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~--~-----~~~~ 109 (491)
T 4aps_A 37 LYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL--P-----FGAS 109 (491)
T ss_dssp HHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS--C-----CSTT
T ss_pred HHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH--h-----hhHH
Confidence 3445666 999999999998888888777 6699999999 89999999999999888776543 2 2577
Q ss_pred HHHHHHHHHHhchhhhhhhHHHHHhhhcC-CC--CCcchhhhhhhhhhhHHHHHHHHHHHcc
Q 021694 112 AMCILIFVGNNGETYFNTAALVSCVQNFP-KS--RGPVVGILKGFAGLGGAILTQVYTMIHA 170 (309)
Q Consensus 112 ~l~~~~~l~g~g~~~~~~~~~~~~~~~FP-~~--RG~avGi~~~~~GLg~ai~~~i~~~~~~ 170 (309)
.+.+...+.|.|.+...++....+.++|| ++ |+.+.++......+|..+.+.+...+.+
T Consensus 110 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 171 (491)
T 4aps_A 110 ALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQE 171 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777788888999888888899999999 66 6677777777777888887777665544
No 5
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.32 E-value=4.4e-11 Score=116.31 Aligned_cols=126 Identities=10% Similarity=0.084 Sum_probs=100.1
Q ss_pred HHHHHHhhC------CCHHHHHHHHHHHHHHhhh-hhhhhhhcccc-chHHHHHHHHHHHHHHHHHHHHHHhCCCCChhH
Q 021694 39 SPVIKSSLN------YNQKQIARLGVAKDLGDSV-GFLAGSLCEVL-PIWGALLVGALQNFIGYGWVWLIVTGRAPVLPL 110 (309)
Q Consensus 39 s~~l~~~lg------~s~~~~~~i~~~~~vg~~~-~~~~G~L~Dr~-Gpr~vllig~~l~~~gy~l~~l~~~~~i~~~s~ 110 (309)
.+.+++++| +|..+.+.+.+...++..+ .+++|++.||+ |+|+++.++.++..++..+..+. . .++
T Consensus 36 ~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~--~----~~~ 109 (524)
T 2xut_A 36 TPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF--E----HSV 109 (524)
T ss_dssp HHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT--S----SCH
T ss_pred HHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh--c----ccH
Confidence 345788899 9999999988887777776 56999999999 99999999999888887776542 1 157
Q ss_pred HHHHHHHHHHHhchhhhhhhHHHHHhhhcC-CCCCcchhh---hhhhhhhhHHHHHHHHHHHcc
Q 021694 111 WAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGI---LKGFAGLGGAILTQVYTMIHA 170 (309)
Q Consensus 111 ~~l~~~~~l~g~g~~~~~~~~~~~~~~~FP-~~RG~avGi---~~~~~GLg~ai~~~i~~~~~~ 170 (309)
+.+.+...+.|.+.+...++......+++| ++||.+.++ .....++|+++.+.+...+.+
T Consensus 110 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 173 (524)
T 2xut_A 110 QGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLK 173 (524)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHH
T ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777777788888888888888889999999 568877776 777777888777766544443
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.19 E-value=7.5e-11 Score=113.45 Aligned_cols=162 Identities=15% Similarity=0.102 Sum_probs=109.2
Q ss_pred HHHHHHhhCC----C----HHHHHHHHHHHHHHhhhh-hhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHhCCC----
Q 021694 39 SPVIKSSLNY----N----QKQIARLGVAKDLGDSVG-FLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRA---- 105 (309)
Q Consensus 39 s~~l~~~lg~----s----~~~~~~i~~~~~vg~~~~-~~~G~L~Dr~Gpr~vllig~~l~~~gy~l~~l~~~~~i---- 105 (309)
.+.+++.++. + ..+.+++.+...+|..+| ++.|++.||+|||++++++.++..++..+..+...+..
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~ 114 (491)
T 4gc0_A 35 VESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINP 114 (491)
T ss_dssp HHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS
T ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence 3566666633 2 234455666666777774 58999999999999999999998887766542111100
Q ss_pred -------CChhHHHHHHHHHHHHhchhhhhhhHHHHHhhhcC-CCCCcchhhhhhhhhhhHHHHHHHHHHHcc-------
Q 021694 106 -------PVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIHA------- 170 (309)
Q Consensus 106 -------~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~FP-~~RG~avGi~~~~~GLg~ai~~~i~~~~~~------- 170 (309)
.+++++.+.+..++.|.|.+...+.+...+.|+.| ++||...++...+..+|..+...+......
T Consensus 115 ~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 194 (491)
T 4gc0_A 115 DNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWL 194 (491)
T ss_dssp SSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTT
T ss_pred hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccc
Confidence 13478999999999999999998899999999999 679999999877776665555443322211
Q ss_pred -CChHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 021694 171 -PDHANLIFMVAVGPAMVVIALMFIIRPVGG 200 (309)
Q Consensus 171 -~~~~~~~l~la~~~~~v~l~~~~~ir~~p~ 200 (309)
.+.+.+.......+.++.++..+++.+.|+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~ 225 (491)
T 4gc0_A 195 NTDGWRYMFASECIPALLFLMLLYTVPESPR 225 (491)
T ss_dssp TTTHHHHHHHTTHHHHHHHHHHGGGSCCCHH
T ss_pred cchhhHHHhhhhhhhhhhhhhhhhcCCCChH
Confidence 123444444555555555555555555553
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.07 E-value=4.6e-10 Score=106.23 Aligned_cols=135 Identities=15% Similarity=0.024 Sum_probs=99.4
Q ss_pred hhhHHhhHHHH-HHhhCCCHHHHHHHHHHHHHHhhh-hhhhhhhcccc--chHHHHHHHHHHHH-HHHHHHHHHHhCCCC
Q 021694 32 GYLFGSISPVI-KSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVL--PIWGALLVGALQNF-IGYGWVWLIVTGRAP 106 (309)
Q Consensus 32 ~Y~fsvys~~l-~~~lg~s~~~~~~i~~~~~vg~~~-~~~~G~L~Dr~--Gpr~vllig~~l~~-~gy~l~~l~~~~~i~ 106 (309)
.+.+..|.|.+ ++.+|++..+.+.+.....++..+ .++.|++.||+ |+|+++.++..+.. +++.++.+ ..
T Consensus 268 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--- 342 (451)
T 1pw4_A 268 RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM--NP--- 342 (451)
T ss_dssp HHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS--CC---
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH--hc---
Confidence 44455566655 556999999999887777777766 56899999999 99999888877766 66554432 11
Q ss_pred ChhHHHHHHHHHHHHhchhhhhhhHHHHHhhhcCC-CCCcchhhhhhhhhh-hHHHHHHHHHHHccC
Q 021694 107 VLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGL-GGAILTQVYTMIHAP 171 (309)
Q Consensus 107 ~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~FP~-~RG~avGi~~~~~GL-g~ai~~~i~~~~~~~ 171 (309)
..+.+.+.....+.|.+.+..+........+.+|+ +||++.|+......+ |+++.+.+...+.+.
T Consensus 343 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~ 409 (451)
T 1pw4_A 343 AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF 409 (451)
T ss_dssp TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12466666666666666677776777788899995 599999999888888 888888777766543
No 8
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.93 E-value=5e-08 Score=93.57 Aligned_cols=133 Identities=15% Similarity=0.096 Sum_probs=88.5
Q ss_pred hhhHHhhHHHHHHhhCCCHHHHHHHHHHHHHHhhh-hhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHhCCCCChhH
Q 021694 32 GYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPL 110 (309)
Q Consensus 32 ~Y~fsvys~~l~~~lg~s~~~~~~i~~~~~vg~~~-~~~~G~L~Dr~Gpr~vllig~~l~~~gy~l~~l~~~~~i~~~s~ 110 (309)
.+.+..|.+.+.+..+.+..+.........+.... .++++++.||+|+|+.++.+.....++...+........+ ...
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~ 371 (491)
T 4gc0_A 293 INVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP-GIV 371 (491)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCC-HHH
T ss_pred hhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccc-hHH
Confidence 55566788889888888887766655555455544 5589999999999999999998888776666554444321 112
Q ss_pred HHHHHHHHHHHhchhhhhhhHHHHHhhhcC-CCCCcchhhhhhhhhhhHHHHHHHHH
Q 021694 111 WAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYT 166 (309)
Q Consensus 111 ~~l~~~~~l~g~g~~~~~~~~~~~~~~~FP-~~RG~avGi~~~~~GLg~ai~~~i~~ 166 (309)
..+.++....+.+.++ .+.......|.|| +.|+++.|+..+...+++.+.+.+..
T Consensus 372 ~~~~~~~~~~~~~~~~-~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p 427 (491)
T 4gc0_A 372 ALLSMLFYVAAFAMSW-GPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFP 427 (491)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHhHH-HHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222222 2234456779999 56999999988887788877765543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.93 E-value=1.7e-08 Score=95.05 Aligned_cols=131 Identities=11% Similarity=-0.050 Sum_probs=92.6
Q ss_pred hhhhHHhhHHH--HHHhhCCCHHHHHHHHHHHHHHhhh-hhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 021694 31 IGYLFGSISPV--IKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPV 107 (309)
Q Consensus 31 ~~Y~fsvys~~--l~~~lg~s~~~~~~i~~~~~vg~~~-~~~~G~L~Dr~Gpr~vllig~~l~~~gy~l~~l~~~~~i~~ 107 (309)
..+.+..+.+. +++.+|++..+.+.......++..+ .++.|++.||+|+|+++.++.++..+++.++.. ..
T Consensus 273 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~--~~---- 346 (438)
T 3o7q_A 273 AQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF--AG---- 346 (438)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CC----
T ss_pred HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH--cC----
Confidence 34444455544 4556799999999887777777766 558999999999999999999888877665543 21
Q ss_pred hhHHHHHHHHHHHHhchhhhhhhHHHHHhhhcCCCCCcchhhhhhhhhhhHHHHHHHHHHHcc
Q 021694 108 LPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHA 170 (309)
Q Consensus 108 ~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~FP~~RG~avGi~~~~~GLg~ai~~~i~~~~~~ 170 (309)
+.+.+... .+.+.+.+..++.......+.+|++|+.+.++.... .+|+++.+.+...+.+
T Consensus 347 -~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~g~l~~ 406 (438)
T 3o7q_A 347 -GHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIVMT-IIGGGIVTPVMGFVSD 406 (438)
T ss_dssp -HHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHHHHHT-THHHHHHHHHHHHHHH
T ss_pred -CcHHHHHH-HHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHH-HHHHHHHHHHHHHHHH
Confidence 33333322 445556666666777777899998799999987744 4888877777665543
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.85 E-value=9.2e-10 Score=104.80 Aligned_cols=131 Identities=14% Similarity=0.076 Sum_probs=81.9
Q ss_pred HHhhHHHHHHhhCCCHHHHHHHHHHHHHHhhh-hhhhhhhccccchHHHHHHHHHHHHHHH-HHHHHHHhCCCCChhH-H
Q 021694 35 FGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGY-GWVWLIVTGRAPVLPL-W 111 (309)
Q Consensus 35 fsvys~~l~~~lg~s~~~~~~i~~~~~vg~~~-~~~~G~L~Dr~Gpr~vllig~~l~~~gy-~l~~l~~~~~i~~~s~-~ 111 (309)
++.....+++++|+|..+.+.+.+...++..+ .++.|+++||+|||++++++.....++. ..+...... .. +
T Consensus 27 ~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~ 101 (417)
T 2cfq_A 27 FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP-----LLQY 101 (417)
T ss_dssp TTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHH-----HHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH
Confidence 34444457888999999999988877777777 6699999999999999998887665321 111100000 00 0
Q ss_pred HHHHHHHHHHhchhhhhhhHHHHHhhhcC---CCCCcchhhhhhhhhhhHHHHHHHHHHHcc
Q 021694 112 AMCILIFVGNNGETYFNTAALVSCVQNFP---KSRGPVVGILKGFAGLGGAILTQVYTMIHA 170 (309)
Q Consensus 112 ~l~~~~~l~g~g~~~~~~~~~~~~~~~FP---~~RG~avGi~~~~~GLg~ai~~~i~~~~~~ 170 (309)
.......+.+.+.+..+.+.......+.+ ++||.+.|.......+|.++.+.+...+.+
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~ 163 (417)
T 2cfq_A 102 NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT 163 (417)
T ss_dssp TCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112233444444444444444445554 467888888877777888887766555443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.84 E-value=1e-08 Score=98.61 Aligned_cols=155 Identities=11% Similarity=0.032 Sum_probs=93.6
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHhhh-hhhhhhhccccchHHHHH-----HHHHHHHHHHHHHHHHHhC--CCCChhHHHH
Q 021694 42 IKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALL-----VGALQNFIGYGWVWLIVTG--RAPVLPLWAM 113 (309)
Q Consensus 42 l~~~lg~s~~~~~~i~~~~~vg~~~-~~~~G~L~Dr~Gpr~vll-----ig~~l~~~gy~l~~l~~~~--~i~~~s~~~l 113 (309)
+++.++.+..+.+.+.....++..+ +++.|++.||+|+|+... +|.++..+++.++...... .....+.+.+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (491)
T 4aps_A 310 AAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWL 389 (491)
T ss_dssp HHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHH
T ss_pred HHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHH
Confidence 5666676644444444444444444 668999999999876544 7777777776665543211 0001145555
Q ss_pred HHHHHHHHhchhhhhhhHHHHHhhhcC-CCCCcchhhhhhhhhhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHH
Q 021694 114 CILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIALM 192 (309)
Q Consensus 114 ~~~~~l~g~g~~~~~~~~~~~~~~~FP-~~RG~avGi~~~~~GLg~ai~~~i~~~~~~~~~~~~~l~la~~~~~v~l~~~ 192 (309)
.....+.+.|.+...+.......+.+| ++||.+.|+......+|+++.+.+.....+.+....+...++..++.+++..
T Consensus 390 ~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (491)
T 4aps_A 390 VGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLV 469 (491)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 555666777777777777888889999 5699999999888889988887775544333333333344444443333333
Q ss_pred hhcc
Q 021694 193 FIIR 196 (309)
Q Consensus 193 ~~ir 196 (309)
++.|
T Consensus 470 ~~~~ 473 (491)
T 4aps_A 470 FLSK 473 (491)
T ss_dssp HC--
T ss_pred HHHH
Confidence 3333
No 12
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.79 E-value=5.7e-08 Score=92.31 Aligned_cols=111 Identities=10% Similarity=0.003 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhhh-hhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHhchhhhhhhH
Q 021694 53 IARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAA 131 (309)
Q Consensus 53 ~~~i~~~~~vg~~~-~~~~G~L~Dr~Gpr~vllig~~l~~~gy~l~~l~~~~~i~~~s~~~l~~~~~l~g~g~~~~~~~~ 131 (309)
.+.......++..+ .++.|++.||+|+|+++.++.++..+++.++.+ . ++.+.+.+...+.+.+.+....+.
T Consensus 261 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~l~~~~~~~~~~~~ 333 (417)
T 2cfq_A 261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF--A-----TSALEVVILKTLHMFEVPFLLVGC 333 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT--C-----CSHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH--h-----ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444 458999999999999999888877776544421 1 134444444444444444455555
Q ss_pred HHHHhhhcC-CCCCcchhhh-hhhhhhhHHHHHHHHHHHcc
Q 021694 132 LVSCVQNFP-KSRGPVVGIL-KGFAGLGGAILTQVYTMIHA 170 (309)
Q Consensus 132 ~~~~~~~FP-~~RG~avGi~-~~~~GLg~ai~~~i~~~~~~ 170 (309)
.....+.+| +.||++.|+. ....++|+++.+.+...+.+
T Consensus 334 ~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~ 374 (417)
T 2cfq_A 334 FKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE 374 (417)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH
Confidence 677889999 5699999984 66777888877766554443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.32 E-value=4.4e-08 Score=90.77 Aligned_cols=130 Identities=15% Similarity=0.190 Sum_probs=86.4
Q ss_pred hHHhhHHH-HHHhhCCCHHHHHHHHHHHHHHhhh-hhhhhhhccccchHHHHHHHHHH-HHHHHHHHHHHHhCCCCChhH
Q 021694 34 LFGSISPV-IKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQ-NFIGYGWVWLIVTGRAPVLPL 110 (309)
Q Consensus 34 ~fsvys~~-l~~~lg~s~~~~~~i~~~~~vg~~~-~~~~G~L~Dr~Gpr~vllig~~l-~~~gy~l~~l~~~~~i~~~s~ 110 (309)
.+..+.|. +++.+|+|..+.+.+.....++..+ .++.|++.||+|++. ..+... ...+..++...... ..+.
T Consensus 217 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~ 291 (375)
T 2gfp_A 217 AFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFG---VMNV 291 (375)
T ss_dssp HHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhc---cccH
Confidence 33334443 4666899998888887777777766 558999999999833 333332 22222221111111 1246
Q ss_pred HHHHHHHHHHHhchhhhhhhHHHHHhhhcCCCCCcchhhhhhhhhhhHHHHHHHHHHH
Q 021694 111 WAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMI 168 (309)
Q Consensus 111 ~~l~~~~~l~g~g~~~~~~~~~~~~~~~FP~~RG~avGi~~~~~GLg~ai~~~i~~~~ 168 (309)
|.+.....+.+.+.+..+........+.+|++||++.|+......+|+++.+.+...+
T Consensus 292 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l 349 (375)
T 2gfp_A 292 WTLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAML 349 (375)
T ss_dssp HHHHHHHHHHHHHHHHTSSTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666667777788788888888899998899999998888888877776554443
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.83 E-value=4.2e-05 Score=73.86 Aligned_cols=104 Identities=11% Similarity=0.034 Sum_probs=67.1
Q ss_pred hhhhhhhc----cccc----hHHHHHHHHHHHHHHHHHHHHHHhCC--CCChhHHHHHHHHHHHHhchhhhhhhHHHHHh
Q 021694 67 GFLAGSLC----EVLP----IWGALLVGALQNFIGYGWVWLIVTGR--APVLPLWAMCILIFVGNNGETYFNTAALVSCV 136 (309)
Q Consensus 67 ~~~~G~L~----Dr~G----pr~vllig~~l~~~gy~l~~l~~~~~--i~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~ 136 (309)
+++.|++. ||.| +++.+.+|.++..+++.++....... ....+.+.+.....+.|.+.+..+........
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 431 (524)
T 2xut_A 352 IPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAY 431 (524)
T ss_dssp GGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554 5544 34567777777777766543311000 00124555555666677777777777778888
Q ss_pred hhcC-CCCCcchhhhhhhhhhhHHHHHHHHHHHcc
Q 021694 137 QNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIHA 170 (309)
Q Consensus 137 ~~FP-~~RG~avGi~~~~~GLg~ai~~~i~~~~~~ 170 (309)
+.+| ++||.+.|+.....++|+++.+.+.....+
T Consensus 432 ~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 432 SQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp HHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred HhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999 679999999999999999999888766554
No 15
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=41.04 E-value=55 Score=21.77 Aligned_cols=35 Identities=14% Similarity=0.129 Sum_probs=18.5
Q ss_pred CchhHHHHHHHHHHHHHHHhHHHhhhhcccccCCC
Q 021694 238 LNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTD 272 (309)
Q Consensus 238 ~~~~~~~~~~~~~~~ll~~~~~v~~~~~~~~~~~~ 272 (309)
.+-.......++-++++.+...+--+..|+.|+++
T Consensus 10 vp~wiIi~svl~GLllL~li~~~LwK~GFFkR~~~ 44 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNRP 44 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCC
Confidence 34343333333334444445555667788887764
No 16
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=36.53 E-value=61 Score=21.57 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhHHHhhhhcccccCCCccc
Q 021694 247 TVILFVLLFIPIVIPIILSFFLERTDPAE 275 (309)
Q Consensus 247 ~~~~~~ll~~~~~v~~~~~~~~~~~~~~~ 275 (309)
.++-++++.+..++--+..|++|+++..+
T Consensus 16 vl~GLLLL~Lii~~LwK~GFFKR~~~~~~ 44 (54)
T 2l8s_A 16 AFAGLLLLMLLILALWKIGFFKRPLKKKM 44 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCSCCC
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCCcchh
Confidence 33334444445555667888888876443
Done!