BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021695
(309 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255581209|ref|XP_002531417.1| KOM, putative [Ricinus communis]
gi|223528967|gb|EEF30959.1| KOM, putative [Ricinus communis]
Length = 340
Score = 333 bits (855), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 164/269 (60%), Positives = 201/269 (74%), Gaps = 12/269 (4%)
Query: 13 HREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRL 72
H +P W+ P+ TT H ++ + S RL LLHSS KKLS LCH+PRL
Sbjct: 19 HHQPIWWVQFQPVGPTPTTPFHLIATATSLRL--------SFLLHSSFKKLSHLCHVPRL 70
Query: 73 KDQWCENAFRFNGVNFFRFTNDAFASS----LSFFNGGGTRKNSGHEGTSHLDTARTNLF 128
KD WC A +F G++F + +ND AS+ LSFFNGG T K G +G + + +++N F
Sbjct: 71 KDIWCRKASQFKGIDFLQISNDVLASTTSHCLSFFNGGETGKGHGIQGAPYSEASKSNSF 130
Query: 129 IGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
GR+WTNILLA+N+LV+ AQFATQ KLL WGAK+NSLIDKGQFWRL TS+FLHANI HLM
Sbjct: 131 NGRKWTNILLAINILVFAAQFATQGKLLFWGAKVNSLIDKGQFWRLVTSSFLHANIGHLM 190
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
VN YSLNSIGPT+E + GPRR+L VYF+SAIASSA SY FC +PAVGASGAIFGLVGS A
Sbjct: 191 VNSYSLNSIGPTIENLSGPRRFLAVYFTSAIASSATSYWFCKAPAVGASGAIFGLVGSLA 250
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMV 277
VF++RHR ++ GGKEELQH+A+VI+ NMV
Sbjct: 251 VFVIRHRGMIRGGKEELQHIAQVILLNMV 279
>gi|224073304|ref|XP_002304070.1| predicted protein [Populus trichocarpa]
gi|222841502|gb|EEE79049.1| predicted protein [Populus trichocarpa]
Length = 325
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 166/281 (59%), Positives = 201/281 (71%), Gaps = 25/281 (8%)
Query: 1 MESSASGRALPHHREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSV 60
M SS S P R P PLNLITT A L L+HSS
Sbjct: 2 MGSSLSASPQPLWRVPIQ-----PLNLITTVAS----------------LRFGFLVHSSF 40
Query: 61 KKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASS----LSFFNGGGTRKNSGHEG 116
K +S L H+PRLKD W E A + G++ +F+ND FAS+ L FFNGGGTRK +EG
Sbjct: 41 KNISHLYHVPRLKDVWHEKASQLQGIDVLQFSNDVFASTCSSCLCFFNGGGTRKGFRNEG 100
Query: 117 TSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLAT 176
+ +L+T+ + F GRQWTNILLA+N+LVY AQ AT+ KLL WGAK+NSLIDKGQFWRLAT
Sbjct: 101 SPNLETSGRSSFNGRQWTNILLAINILVYFAQIATRGKLLFWGAKVNSLIDKGQFWRLAT 160
Query: 177 SAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGA 236
S+ LHANI HLMVNCYSLNS+GPT+E + GPRR++ VY +SAIASSAMSY FC +PAVGA
Sbjct: 161 SSVLHANIGHLMVNCYSLNSVGPTIENLSGPRRFIAVYLTSAIASSAMSYWFCRAPAVGA 220
Query: 237 SGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMV 277
SGAIFGLVGS AVF++RHR ++GGGKE+LQ++AKVI NM+
Sbjct: 221 SGAIFGLVGSLAVFVIRHRRMIGGGKEDLQNIAKVIFLNMM 261
>gi|118483595|gb|ABK93694.1| unknown [Populus trichocarpa]
Length = 325
Score = 320 bits (819), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 165/281 (58%), Positives = 200/281 (71%), Gaps = 25/281 (8%)
Query: 1 MESSASGRALPHHREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSV 60
M SS S P R P PLNLITT A L L+HSS
Sbjct: 2 MGSSLSASPQPLWRVPIQ-----PLNLITTVAS----------------LRFGFLVHSSF 40
Query: 61 KKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASS----LSFFNGGGTRKNSGHEG 116
K +S L H+PRLKD W E A + G++ +F+ND FAS+ L FFNGGGTRK +EG
Sbjct: 41 KNISHLYHVPRLKDVWHEKASQLQGIDVLQFSNDVFASTCSSCLCFFNGGGTRKGFRNEG 100
Query: 117 TSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLAT 176
+ +L+T+ + F GRQWTNILLA+N+LVY AQ AT+ KLL WGAK+NSLIDKGQFWRLAT
Sbjct: 101 SPNLETSGRSSFNGRQWTNILLAINILVYFAQIATRGKLLFWGAKVNSLIDKGQFWRLAT 160
Query: 177 SAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGA 236
S+ LHANI HLMVNCYSLNS+GPT+E + GPRR++ VY +SAIASSAMSY FC +PAVGA
Sbjct: 161 SSVLHANIGHLMVNCYSLNSVGPTIENLSGPRRFIAVYLTSAIASSAMSYWFCRAPAVGA 220
Query: 237 SGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMV 277
SGAIFGLVGS AVF++RHR ++GG KE+LQ++AKVI NM+
Sbjct: 221 SGAIFGLVGSLAVFVIRHRRMIGGAKEDLQNIAKVIFLNMM 261
>gi|225448034|ref|XP_002273377.1| PREDICTED: rhomboid protease gluP [Vitis vinifera]
gi|298204568|emb|CBI23843.3| unnamed protein product [Vitis vinifera]
Length = 330
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 156/264 (59%), Positives = 193/264 (73%), Gaps = 10/264 (3%)
Query: 21 TRPPLNLITTTAKHSLSVSLSRRL---LHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWC 77
+R PL+ + T H ++ + S RL +H +H L SS K+L+ L H+P LK+ W
Sbjct: 10 SRFPLSKVGPTPAHLITTAASLRLGHFIHRQYIHLGFFLRSSFKRLAHLAHVPGLKNIWF 69
Query: 78 ENAFRFNGVNFFRFTNDAFASS----LSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQW 133
A +F G++F +D+F+++ L FF G TRK S EG S+ + R N GRQW
Sbjct: 70 GKAIQFQGISF---PSDSFSATCSSYLYFFGGEETRKGSRDEGMSYSEAPRRNSLRGRQW 126
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
TNIL+A+NVLV+I Q ATQ KLLLWGAKINSLIDKGQFWRLATS+FLHANI HLMVNC+S
Sbjct: 127 TNILIAINVLVFIGQAATQGKLLLWGAKINSLIDKGQFWRLATSSFLHANIGHLMVNCFS 186
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMR 253
LNS+GPT+E + GPRRYL VYF+SAIASSAMSY C PAVGASGAIFGLVGS AVF+MR
Sbjct: 187 LNSVGPTVENLSGPRRYLAVYFTSAIASSAMSYWLCKGPAVGASGAIFGLVGSVAVFMMR 246
Query: 254 HRNILGGGKEELQHLAKVIIFNMV 277
HR ++G KE LQH+A+VI+ NMV
Sbjct: 247 HRGLVGDSKESLQHIARVIVLNMV 270
>gi|363807582|ref|NP_001242663.1| uncharacterized protein LOC100805315 [Glycine max]
gi|255640088|gb|ACU20335.1| unknown [Glycine max]
Length = 342
Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 151/259 (58%), Positives = 178/259 (68%), Gaps = 7/259 (2%)
Query: 24 PLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRF 83
PL+LI T A L RR HH L LLHS KKL+ L HI RL D+WC+ F+
Sbjct: 22 PLDLIATAASLHFGHLLRRRATHH--LRLGVLLHSCFKKLAPLTHIFRLNDKWCQRCFQL 79
Query: 84 NGVNFFRFTNDAFASSLSFFNGGGTRKNSG-----HEGTSHLDTARTNLFIGRQWTNILL 138
NG+N+ + + SS S G G S+ + + F GR+WT ILL
Sbjct: 80 NGLNYLQLSTGDLTSSWSTSFSFFNGGGDGGRRYGKAGMSNSKMSGKDPFNGRKWTEILL 139
Query: 139 AVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIG 198
A NVL YIAQ ATQ KLLLWGAKINSLIDKGQ WRLATS+FLHANI HL+VNCYSLNS+G
Sbjct: 140 AANVLFYIAQLATQGKLLLWGAKINSLIDKGQLWRLATSSFLHANIGHLLVNCYSLNSVG 199
Query: 199 PTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNIL 258
PT+E GPRR+L VYF SAIASSA SY FC PAVGASGAIFGLVGS AVF++RH++++
Sbjct: 200 PTVESFSGPRRFLAVYFISAIASSATSYWFCRMPAVGASGAIFGLVGSVAVFVLRHKDLV 259
Query: 259 GGGKEELQHLAKVIIFNMV 277
GGGK +LQH+A+VI NMV
Sbjct: 260 GGGKRDLQHIAQVIALNMV 278
>gi|357452411|ref|XP_003596482.1| Rhomboid protease gluP [Medicago truncatula]
gi|355485530|gb|AES66733.1| Rhomboid protease gluP [Medicago truncatula]
Length = 327
Score = 274 bits (700), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 145/257 (56%), Positives = 185/257 (71%), Gaps = 16/257 (6%)
Query: 24 PLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRF 83
PL++I T A S +S RL H LL S +KL+ + RLKD+WC+ +
Sbjct: 18 PLDIIATAASFHFSHRVSHRLRLHF------LLRSCFQKLA---PVFRLKDKWCQKYLQL 68
Query: 84 NGVNFFRFTNDAFAS----SLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLA 139
G+N+ + ++D S S SFFNGG +SG+ + +R N F GR+WTNILLA
Sbjct: 69 KGLNYLQLSSDGLTSACSTSFSFFNGGRPEASSGNSDS---KMSRKNPFNGRKWTNILLA 125
Query: 140 VNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGP 199
NVL Y+AQ ATQ KLL WGAK+NSLIDKGQ WRL TS+FLHANI HLM+NCYSLNS+GP
Sbjct: 126 ANVLFYVAQLATQGKLLSWGAKVNSLIDKGQVWRLVTSSFLHANIGHLMINCYSLNSVGP 185
Query: 200 TMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILG 259
T+E GPRRYL +YF+S+IAS+AMSYRFC PAVGASGAIFGLVGS AVF++RH++++G
Sbjct: 186 TVESFSGPRRYLAIYFASSIASAAMSYRFCKMPAVGASGAIFGLVGSVAVFVLRHKDLVG 245
Query: 260 GGKEELQHLAKVIIFNM 276
GGK++LQH+A+VI N+
Sbjct: 246 GGKKDLQHIAQVIALNL 262
>gi|388500820|gb|AFK38476.1| unknown [Medicago truncatula]
Length = 327
Score = 271 bits (692), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 144/257 (56%), Positives = 184/257 (71%), Gaps = 16/257 (6%)
Query: 24 PLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRF 83
PL++I T A S +S RL H LL S +KL+ + RLKD+WC+ +
Sbjct: 18 PLDIIATAASFHFSHRVSHRLRLHF------LLRSCFQKLAPVF---RLKDKWCQKYLQL 68
Query: 84 NGVNFFRFTNDAFAS----SLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLA 139
G+N+ + ++D S S SFFNGG +SG+ + +R N F GR+WTNILLA
Sbjct: 69 KGLNYLQLSSDGLTSACSTSFSFFNGGRPEASSGNSDS---KMSRKNPFNGRKWTNILLA 125
Query: 140 VNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGP 199
NVL Y+AQ ATQ KLL WGAK+NSLIDKGQ WRL TS+FLHANI HLM+NCYSLNS+GP
Sbjct: 126 ANVLFYVAQLATQGKLLSWGAKVNSLIDKGQVWRLVTSSFLHANIGHLMINCYSLNSVGP 185
Query: 200 TMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILG 259
T+E GPRRYL +YF+S+IAS+AMSYRFC PAVGASGAIFGLVGS AVF++RH++++G
Sbjct: 186 TVESFSGPRRYLAIYFASSIASAAMSYRFCKMPAVGASGAIFGLVGSVAVFVLRHKDLVG 245
Query: 260 GGKEELQHLAKVIIFNM 276
GG ++LQH+A+VI N+
Sbjct: 246 GGIKDLQHIAQVIALNL 262
>gi|334182855|ref|NP_001185093.1| RHOMBOID-like protein 10 [Arabidopsis thaliana]
gi|332192482|gb|AEE30603.1| RHOMBOID-like protein 10 [Arabidopsis thaliana]
Length = 336
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 132/255 (51%), Positives = 173/255 (67%), Gaps = 8/255 (3%)
Query: 30 TTAKHSLSVSLSRRLLHHHPLHARRLLH--SSVKKLSRLCHIPRLKDQWCENAFRFNGVN 87
+TA + + S HH H R H SS+KKL R+K + F FNG N
Sbjct: 18 STAFRGFATAASVHACHHVSRHLRLDFHLRSSLKKLQHFSDDARMKFARYQRVFVFNGAN 77
Query: 88 FFRFTNDAFASSLS----FFNGGGTRKN--SGHEGTSHLDTARTNLFIGRQWTNILLAVN 141
F + D S S FFNGG +R N G EG+S+ +T++ N GR+WTN+LLA+N
Sbjct: 78 FLKSRVDIRLSQSSPFVCFFNGGESRLNPRGGEEGSSNPETSKRNTVNGRRWTNVLLAIN 137
Query: 142 VLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTM 201
V++YIAQ A+ K+L WGAKINSLI++GQ WRLAT++ LHAN HLM+NCYSLNSIGPT
Sbjct: 138 VIMYIAQIASDGKVLTWGAKINSLIERGQLWRLATASVLHANPMHLMINCYSLNSIGPTA 197
Query: 202 EKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGG 261
E + GP+R+L VY +SA+ASSAMSY F +P+VGASGAIFGLVGS AVF++RH+ ++ GG
Sbjct: 198 ESLGGPKRFLAVYLTSAVASSAMSYWFNKAPSVGASGAIFGLVGSVAVFVIRHKQMVRGG 257
Query: 262 KEELQHLAKVIIFNM 276
E+L +A++I NM
Sbjct: 258 NEDLMQIAQIIALNM 272
>gi|388498512|gb|AFK37322.1| unknown [Lotus japonicus]
Length = 220
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 116/152 (76%), Positives = 134/152 (88%)
Query: 126 NLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
N F R+WTNILLA NVL +IAQ ATQ KLLLWGAK+NSLIDKGQ WRLATS+FLHANI
Sbjct: 5 NPFNRRKWTNILLAANVLFFIAQLATQGKLLLWGAKVNSLIDKGQIWRLATSSFLHANIG 64
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
HLM+NC+SLNS+GPT+E+ GPRR+L VYF SAIASSAMSY FC PAVGASGAIFGLVG
Sbjct: 65 HLMINCFSLNSVGPTVERFSGPRRFLAVYFISAIASSAMSYWFCKMPAVGASGAIFGLVG 124
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMV 277
S AVF++RHR+I+GGGKE+LQH+A+VI+ NMV
Sbjct: 125 SVAVFVLRHRDIVGGGKEDLQHIARVIVLNMV 156
>gi|30689150|ref|NP_173900.2| RHOMBOID-like protein 10 [Arabidopsis thaliana]
gi|332192481|gb|AEE30602.1| RHOMBOID-like protein 10 [Arabidopsis thaliana]
Length = 343
Score = 243 bits (620), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 131/262 (50%), Positives = 172/262 (65%), Gaps = 15/262 (5%)
Query: 30 TTAKHSLSVSLSRRLLHHHPLHARRLLH--SSVKKLSRLCHIPRLKDQWCENAFRFNGVN 87
+TA + + S HH H R H SS+KKL R+K + F FNG N
Sbjct: 18 STAFRGFATAASVHACHHVSRHLRLDFHLRSSLKKLQHFSDDARMKFARYQRVFVFNGAN 77
Query: 88 FFRFTNDAFASSLS----FFNGGGTRKN--SGHEGTSHLDTARTNLFIGRQWTNILLAVN 141
F + D S S FFNGG +R N G EG+S+ +T++ N GR+WTN+LLA+N
Sbjct: 78 FLKSRVDIRLSQSSPFVCFFNGGESRLNPRGGEEGSSNPETSKRNTVNGRRWTNVLLAIN 137
Query: 142 VLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTM 201
V++YIAQ A+ K+L WGAKINSLI++GQ WRLAT++ LHAN HLM+NCYSLNSIGPT
Sbjct: 138 VIMYIAQIASDGKVLTWGAKINSLIERGQLWRLATASVLHANPMHLMINCYSLNSIGPTA 197
Query: 202 EKICGPRRYLGVYFSSAIAS-------SAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRH 254
E + GP+R+L VY +SA+A SAMSY F +P+VGASGAIFGLVGS AVF++RH
Sbjct: 198 ESLGGPKRFLAVYLTSAVAKPILRVLGSAMSYWFNKAPSVGASGAIFGLVGSVAVFVIRH 257
Query: 255 RNILGGGKEELQHLAKVIIFNM 276
+ ++ GG E+L +A++I NM
Sbjct: 258 KQMVRGGNEDLMQIAQIIALNM 279
>gi|11761473|gb|AAG40087.1|AC079374_1 unknown protein [Arabidopsis thaliana]
Length = 369
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 120/230 (52%), Positives = 159/230 (69%), Gaps = 13/230 (5%)
Query: 60 VKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLS----FFNGGGTRKN--SG 113
++KL R+K + F FNG NF + D S S FFNGG +R N G
Sbjct: 76 LQKLQHFSDDARMKFARYQRVFVFNGANFLKSRVDIRLSQSSPFVCFFNGGESRLNPRGG 135
Query: 114 HEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWR 173
EG+S+ +T++ N GR+WTN+LLA+NV++YIAQ A+ K+L WGAKINSLI++GQ WR
Sbjct: 136 EEGSSNPETSKRNTVNGRRWTNVLLAINVIMYIAQIASDGKVLTWGAKINSLIERGQLWR 195
Query: 174 LATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS-------SAMSY 226
LAT++ LHAN HLM+NCYSLNSIGPT E + GP+R+L VY +SA+A SAMSY
Sbjct: 196 LATASVLHANPMHLMINCYSLNSIGPTAESLGGPKRFLAVYLTSAVAKPILRVLGSAMSY 255
Query: 227 RFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNM 276
F +P+VGASGAIFGLVGS AVF++RH+ ++ GG E+L +A++I NM
Sbjct: 256 WFNKAPSVGASGAIFGLVGSVAVFVIRHKQMVRGGNEDLMQIAQIIALNM 305
>gi|25518651|pir||F86382 hypothetical protein F4F7.14 - Arabidopsis thaliana
Length = 373
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 120/230 (52%), Positives = 159/230 (69%), Gaps = 13/230 (5%)
Query: 60 VKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLS----FFNGGGTRKN--SG 113
++KL R+K + F FNG NF + D S S FFNGG +R N G
Sbjct: 76 LQKLQHFSDDARMKFARYQRVFVFNGANFLKSRVDIRLSQSSPFVCFFNGGESRLNPRGG 135
Query: 114 HEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWR 173
EG+S+ +T++ N GR+WTN+LLA+NV++YIAQ A+ K+L WGAKINSLI++GQ WR
Sbjct: 136 EEGSSNPETSKRNTVNGRRWTNVLLAINVIMYIAQIASDGKVLTWGAKINSLIERGQLWR 195
Query: 174 LATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS-------SAMSY 226
LAT++ LHAN HLM+NCYSLNSIGPT E + GP+R+L VY +SA+A SAMSY
Sbjct: 196 LATASVLHANPMHLMINCYSLNSIGPTAESLGGPKRFLAVYLTSAVAKPILRVLGSAMSY 255
Query: 227 RFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNM 276
F +P+VGASGAIFGLVGS AVF++RH+ ++ GG E+L +A++I NM
Sbjct: 256 WFNKAPSVGASGAIFGLVGSVAVFVIRHKQMVRGGNEDLMQIAQIIALNM 305
>gi|115479511|ref|NP_001063349.1| Os09g0454100 [Oryza sativa Japonica Group]
gi|51535953|dbj|BAD38035.1| rhomboid-like protein [Oryza sativa Japonica Group]
gi|113631582|dbj|BAF25263.1| Os09g0454100 [Oryza sativa Japonica Group]
gi|218202268|gb|EEC84695.1| hypothetical protein OsI_31626 [Oryza sativa Indica Group]
gi|222641709|gb|EEE69841.1| hypothetical protein OsJ_29608 [Oryza sativa Japonica Group]
Length = 349
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 116/217 (53%), Positives = 151/217 (69%), Gaps = 8/217 (3%)
Query: 66 LCHIPRLKDQWCENAFRFNGVNFFRFTNDA----FASSLSFFNGGGTRKNSGHEGTSHLD 121
L +PR+ D W E + F + +A +A S FNG G+ + + G L
Sbjct: 74 LGALPRIGDIWFEGSDSFATHSILGVLENALSAPYACSSVLFNGNGSDRR--YIGRGKLP 131
Query: 122 TARTNLFIGRQ--WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAF 179
+ R + ++ WTNILLAVN+L Y+AQ TQ +LL+WGAKINS+ID+G+ WRLATS+
Sbjct: 132 SRRPSGINSKKRLWTNILLAVNILAYVAQITTQGRLLIWGAKINSMIDRGELWRLATSSL 191
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGA 239
LHAN+AHL NC+SLNSIGP +E + GPRRYL VYF+SA+A S MSYR+C SPAVGASGA
Sbjct: 192 LHANLAHLAFNCFSLNSIGPMVEMLTGPRRYLAVYFTSALAGSLMSYRYCASPAVGASGA 251
Query: 240 IFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNM 276
IFGLVG++AV+ RHR LG GKE L+H+ +V+I NM
Sbjct: 252 IFGLVGAYAVYTWRHRRFLGHGKESLEHIGRVVILNM 288
>gi|357158730|ref|XP_003578222.1| PREDICTED: rhomboid protease gluP-like [Brachypodium distachyon]
Length = 345
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 119/246 (48%), Positives = 158/246 (64%), Gaps = 8/246 (3%)
Query: 69 IPRLKDQWCENAFRFNGVNFFRFTNDAFASSLSFFNG--GGTRKNSGHEGTSHLDTARTN 126
+PR+ + W + F + F++S + GG R N + G +L +R
Sbjct: 73 LPRIGEIWFGGSHPIETNQVFGSLGNVFSASFVCSSALFGGNRSNGRYIGNGNLQPSRPR 132
Query: 127 LFIGRQ--WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
++ WTN+LLAVN+L YIAQ ATQ KLL+WGAK+NSLID+G+FWRLATS+ LH N+
Sbjct: 133 GINSKKRLWTNVLLAVNILAYIAQVATQGKLLMWGAKVNSLIDRGEFWRLATSSLLHGNL 192
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
HL NC+SLNSIGPT+E + GPRR+L VYF+SA+A S MSY C SP+VGASGAIFGLV
Sbjct: 193 THLAFNCFSLNSIGPTVELVTGPRRFLAVYFTSALAGSLMSYCCCQSPSVGASGAIFGLV 252
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNM---VCSAAFANIVKIESRHTLTGETCYF 301
GS+AV+ RH+ +LG GKE L+H+A+V+I NM + S N + T +F
Sbjct: 253 GSYAVYTWRHKKLLGRGKESLEHIARVVILNMGMGLLSRGIDNWGHLGGLLGGV-ATAWF 311
Query: 302 IDPSKQ 307
I P Q
Sbjct: 312 IGPDWQ 317
>gi|414589616|tpg|DAA40187.1| TPA: hypothetical protein ZEAMMB73_944913 [Zea mays]
Length = 341
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 100/147 (68%), Positives = 122/147 (82%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
R WTN+LLA+NVL Y+AQ A+Q KLL+WGAKINSLID+GQFWRLATS+ LHAN+ HL N
Sbjct: 139 RLWTNVLLALNVLAYVAQVASQGKLLMWGAKINSLIDRGQFWRLATSSLLHANLTHLAFN 198
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
C+SLNSIGP +E + GPRRYL VYFSSA+A S MSYRF SPAVGASGAIFGLVG++AV+
Sbjct: 199 CFSLNSIGPMVEMLSGPRRYLAVYFSSALAGSLMSYRFSASPAVGASGAIFGLVGAYAVY 258
Query: 251 IMRHRNILGGGKEELQHLAKVIIFNMV 277
+ RHR G +E L+H+ +V++ NMV
Sbjct: 259 MWRHRRFFGNSRESLEHIGRVVVLNMV 285
>gi|414589617|tpg|DAA40188.1| TPA: rhomboid-like protein [Zea mays]
Length = 341
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 99/146 (67%), Positives = 121/146 (82%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
R WTN+LLA+NVL Y+AQ A+Q KLL+WGAKINSLID+GQFWRLATS+ LHAN+ HL N
Sbjct: 139 RLWTNVLLALNVLAYVAQVASQGKLLMWGAKINSLIDRGQFWRLATSSLLHANLTHLAFN 198
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
C+SLNSIGP +E + GPRRYL VYFSSA+A S MSYRF SPAVGASGAIFGLVG++AV+
Sbjct: 199 CFSLNSIGPMVEMLSGPRRYLAVYFSSALAGSLMSYRFSASPAVGASGAIFGLVGAYAVY 258
Query: 251 IMRHRNILGGGKEELQHLAKVIIFNM 276
+ RHR G +E L+H+ +V++ NM
Sbjct: 259 MWRHRRFFGNSRESLEHIGRVVVLNM 284
>gi|223943385|gb|ACN25776.1| unknown [Zea mays]
Length = 266
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 100/147 (68%), Positives = 122/147 (82%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
R WTN+LLA+NVL Y+AQ A+Q KLL+WGAKINSLID+GQFWRLATS+ LHAN+ HL N
Sbjct: 64 RLWTNVLLALNVLAYVAQVASQGKLLMWGAKINSLIDRGQFWRLATSSLLHANLTHLAFN 123
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
C+SLNSIGP +E + GPRRYL VYFSSA+A S MSYRF SPAVGASGAIFGLVG++AV+
Sbjct: 124 CFSLNSIGPMVEMLSGPRRYLAVYFSSALAGSLMSYRFSASPAVGASGAIFGLVGAYAVY 183
Query: 251 IMRHRNILGGGKEELQHLAKVIIFNMV 277
+ RHR G +E L+H+ +V++ NMV
Sbjct: 184 MWRHRRFFGNSRESLEHIGRVVVLNMV 210
>gi|226503627|ref|NP_001148641.1| rhomboid-like protein [Zea mays]
gi|195621054|gb|ACG32357.1| rhomboid-like protein [Zea mays]
Length = 346
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 98/146 (67%), Positives = 120/146 (82%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
R WTN+LLA+NVL Y+AQ A+Q KLL+WGAKINSLID+GQFWRLATS+ LHAN+ HL N
Sbjct: 144 RLWTNVLLALNVLAYVAQVASQGKLLMWGAKINSLIDRGQFWRLATSSLLHANLTHLAFN 203
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
C+SLNSIGP +E + GPRRYL VYFSSA+A S MSYR SPAVGASGAIFGLVG++AV+
Sbjct: 204 CFSLNSIGPMVEMLSGPRRYLAVYFSSALAGSLMSYRCSASPAVGASGAIFGLVGAYAVY 263
Query: 251 IMRHRNILGGGKEELQHLAKVIIFNM 276
+ RHR G +E L+H+ +V++ NM
Sbjct: 264 MWRHRRFFGNSRESLEHIGRVVVLNM 289
>gi|242044898|ref|XP_002460320.1| hypothetical protein SORBIDRAFT_02g026450 [Sorghum bicolor]
gi|241923697|gb|EER96841.1| hypothetical protein SORBIDRAFT_02g026450 [Sorghum bicolor]
Length = 341
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 119/255 (46%), Positives = 155/255 (60%), Gaps = 14/255 (5%)
Query: 26 NLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRFNG 85
N++ A L SL RR LL S ++ L +P++ D W E + F
Sbjct: 40 NVVAAFAGAQLGRSLRRRFAG--------LLRS--PEVRHLDALPKMGDFWFEGSEPFAT 89
Query: 86 VNFFRFTNDAFAS----SLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVN 141
+ ++ S + F+G G+ G R R WTN+LLA+N
Sbjct: 90 FPILGAIGNVLSAPYVCSSALFSGNGSGGRYISNGKLLSRRPRGIDSKKRLWTNVLLALN 149
Query: 142 VLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTM 201
VL Y+AQ A+Q KLLLWGAKINSLID+GQFWRLATS+ LHA++ HL NC+SLNSIGP +
Sbjct: 150 VLAYVAQVASQGKLLLWGAKINSLIDRGQFWRLATSSLLHADLTHLAFNCFSLNSIGPMV 209
Query: 202 EKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGG 261
E + GPRR+L VYFSSA+A S MSYR SPAVGASGAIFGLVG+ AV++ RHR G
Sbjct: 210 EMLTGPRRFLAVYFSSALAGSLMSYRCSASPAVGASGAIFGLVGAHAVYMWRHRRFFGNS 269
Query: 262 KEELQHLAKVIIFNM 276
+E L+H+ +V++ NM
Sbjct: 270 RESLEHIGRVVVLNM 284
>gi|168058279|ref|XP_001781137.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667455|gb|EDQ54085.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 391
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 93/172 (54%), Positives = 124/172 (72%), Gaps = 3/172 (1%)
Query: 108 TRKNSGHEGTSHLDTARTNLFIG---RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINS 164
T ++G E + T IG R WTNI+L VN+L++ AQ A+Q +LLL GAK+NS
Sbjct: 155 TAASTGDENDTSSANTITGYGIGSRSRNWTNIILGVNLLMFGAQIASQGQLLLLGAKVNS 214
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
LIDKGQ+WR T + LHANI HL+VNCYSLNS+GPT+E + G +R+L +Y SAIASS +
Sbjct: 215 LIDKGQWWRFVTPSVLHANIMHLLVNCYSLNSVGPTVESLSGGKRFLAIYAVSAIASSGL 274
Query: 225 SYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNM 276
SY C +P+VGASGAIFGLVG+ AVF+ RH+ ++ GG + L +A+VI N+
Sbjct: 275 SYTLCTAPSVGASGAIFGLVGALAVFLARHKTLMIGGDQSLAQVARVIAINL 326
>gi|147784181|emb|CAN72839.1| hypothetical protein VITISV_008789 [Vitis vinifera]
Length = 246
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 79/134 (58%), Positives = 91/134 (67%), Gaps = 27/134 (20%)
Query: 144 VYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEK 203
V+I Q ATQ KLLLWGAK VNC+SLNS+GPT+E
Sbjct: 80 VFIGQAATQGKLLLWGAK---------------------------VNCFSLNSVGPTVEN 112
Query: 204 ICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKE 263
+ GPRRYL VYF+SAIASSAMSY C PAVGASGAIFGLVGS AVF+MRHR ++G KE
Sbjct: 113 LSGPRRYLAVYFTSAIASSAMSYWLCKGPAVGASGAIFGLVGSVAVFMMRHRGLVGDSKE 172
Query: 264 ELQHLAKVIIFNMV 277
LQH+A+VI+ NMV
Sbjct: 173 SLQHIARVIVLNMV 186
>gi|384247206|gb|EIE20693.1| rhomboid-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 238
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/181 (44%), Positives = 112/181 (61%), Gaps = 3/181 (1%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
R+ T+ILL +N VY+AQ ++DKLLL GAK N LI G++WRL T LHAN+ HL+ N
Sbjct: 35 RRVTDILLVLNAAVYVAQLVSKDKLLLLGAKDNQLIRAGEWWRLLTPVALHANLIHLLTN 94
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
YSLNS+GP +E +CG +R++ VY +SA+ S SY F SP+VGASGAIFGL G+ AV+
Sbjct: 95 NYSLNSLGPAVEGLCGRQRFVSVYTASALVGSVASYAFNPSPSVGASGAIFGLGGALAVY 154
Query: 251 IMRHRNILGG-GKEELQHLAKVIIFNMVCSAAFANIVKIESRHTLTGE--TCYFIDPSKQ 307
RHR ++G G L L + + N+ I + L G T Y + P+ +
Sbjct: 155 AARHRKLMGSRGDAILSSLGQSLALNVAIGLTTPRIDQWGHFGGLIGGALTAYLLGPNIE 214
Query: 308 M 308
+
Sbjct: 215 V 215
>gi|452819642|gb|EME26697.1| rhomboid family protein [Galdieria sulphuraria]
Length = 371
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 75/148 (50%), Positives = 103/148 (69%), Gaps = 1/148 (0%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
WT ILL N++V++ Q AT ++LLL GAK+N LI GQ +RL T FLH NIAHLMVNCY
Sbjct: 164 WTKILLVTNIVVFLLQMATANQLLLMGAKVNELISSGQLYRLLTPIFLHGNIAHLMVNCY 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIM 252
SL S+GP +E+ G R++G+Y S S+ F +P++GASGAIFGLVG FAV++
Sbjct: 224 SLYSLGPVVERCFGSHRFIGLYLFSGFFGCIASFFFSKNPSLGASGAIFGLVGGFAVYLK 283
Query: 253 RHRNILG-GGKEELQHLAKVIIFNMVCS 279
RH+ +LG + L +A+ +IFN++ S
Sbjct: 284 RHQYLLGETSRLGLFSIAQSLIFNILMS 311
>gi|302823732|ref|XP_002993515.1| hypothetical protein SELMODRAFT_431594 [Selaginella moellendorffii]
gi|300138646|gb|EFJ05407.1| hypothetical protein SELMODRAFT_431594 [Selaginella moellendorffii]
Length = 280
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 96/128 (75%)
Query: 150 ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRR 209
T+++L+LWGAK+N+LI KGQ WRL T AFLH N+ HL++NCYS++S+GP +E + G +R
Sbjct: 73 GTENRLILWGAKVNNLIAKGQIWRLLTPAFLHVNLIHLLLNCYSVHSLGPHLESLGGSKR 132
Query: 210 YLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLA 269
+L V+ +A+ +S +S+ C SPAVGASGAI GL+G+ AV+ RHR +L +E L ++
Sbjct: 133 FLVVFAVAAVTTSCLSFLMCKSPAVGASGAICGLIGALAVYSFRHRKLLNKAQENLGRIS 192
Query: 270 KVIIFNMV 277
+ + FNMV
Sbjct: 193 RTVAFNMV 200
>gi|388510370|gb|AFK43251.1| unknown [Lotus japonicus]
Length = 154
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/90 (72%), Positives = 79/90 (87%)
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
M+NC+SLNS+GPT+E+ GPRR+L VYF SAIASSAM Y FC PA GASGAIFGLVGS
Sbjct: 1 MINCFSLNSVGPTVERFSGPRRFLAVYFISAIASSAMGYWFCKMPAAGASGAIFGLVGSV 60
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMV 277
AVF++RHR+I+GGGKE+LQH+A+VI+ NMV
Sbjct: 61 AVFVLRHRDIVGGGKEDLQHIARVIVLNMV 90
>gi|307110920|gb|EFN59155.1| hypothetical protein CHLNCDRAFT_138007 [Chlorella variabilis]
Length = 247
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 102/152 (67%), Gaps = 6/152 (3%)
Query: 130 GRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
GR+ T++LL N L++ Q T+ L +WG K+N+L+ GQ+WRL T AFLH N+ HL V
Sbjct: 35 GRRATDVLLVSNALLFGLQLLTKQALTVWGVKVNALVVAGQWWRLLTPAFLHGNLMHLAV 94
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP---AVGASGAIFGLVGS 246
NCYSLN++GP +E GP R+L +Y S+A+A + S F +P ++GASGA+FG+ G+
Sbjct: 95 NCYSLNNLGPPVEGAAGPPRFLLMYLSAAVAGNVAS--FLGAPKSVSLGASGAVFGIGGA 152
Query: 247 FAVFIMRHRNILGGGKEE-LQHLAKVIIFNMV 277
A++ R+R+I G + L+ L + ++ N+V
Sbjct: 153 LAMYFYRNRDIYGKTSDRVLRQLWQTLVLNVV 184
>gi|145347053|ref|XP_001417993.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578221|gb|ABO96286.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 268
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 88/147 (59%), Gaps = 1/147 (0%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
R TN ++ + Q + + GAK+N I GQ WRLAT FLH + HLMVN
Sbjct: 49 RACTNAIMIGTASAFALQILSGQAITALGAKVNERIAAGQLWRLATPIFLHGGLPHLMVN 108
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
YSLNSIGP ME G ++L VYF + +A + SYRFC S +VGASGA+FGL G+ AV+
Sbjct: 109 MYSLNSIGPLMEATFGREQFLAVYFGAGVAGNYASYRFCASNSVGASGAVFGLAGALAVY 168
Query: 251 IMRHRNILGGGKE-ELQHLAKVIIFNM 276
+ RH+ LG + +LQ L + NM
Sbjct: 169 LQRHKRYLGERADMQLQQLGTALAVNM 195
>gi|302841472|ref|XP_002952281.1| hypothetical protein VOLCADRAFT_105418 [Volvox carteri f.
nagariensis]
gi|300262546|gb|EFJ46752.1| hypothetical protein VOLCADRAFT_105418 [Volvox carteri f.
nagariensis]
Length = 399
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 95/150 (63%), Gaps = 1/150 (0%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
R+ T++ L +N L+Y + ++D LLLWG K+N+LI GQ WRL T FLH+N HL++N
Sbjct: 99 RRATDVFLVLNALIYALNWLSKDVLLLWGCKVNALIAAGQLWRLVTPLFLHSNAFHLLIN 158
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
++L+++GP +E + G +R VY +S + +S S+ + P+VGASGA+FGL + VF
Sbjct: 159 MHALHTLGPQVEVVSGSKRTSVVYLASGVLASLASFMWSPLPSVGASGAVFGLGAALGVF 218
Query: 251 IMRHRNILGGGKEE-LQHLAKVIIFNMVCS 279
RHR++LG E L+ L N+ S
Sbjct: 219 YWRHRDVLGPASESGLRSLGLAAAINIAYS 248
>gi|308804015|ref|XP_003079320.1| Predicted inosine-uridine preferring nucleoside hydrolase (ISS)
[Ostreococcus tauri]
gi|116057775|emb|CAL53978.1| Predicted inosine-uridine preferring nucleoside hydrolase (ISS)
[Ostreococcus tauri]
Length = 651
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 89/147 (60%), Gaps = 1/147 (0%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
R T+ ++ + Q T+ L +G KIN I G+ WRL T FLH + HLMVN
Sbjct: 55 RACTDGIIVATCGAFALQLLTRQTLTGFGVKINEKIAAGELWRLVTPMFLHGGLPHLMVN 114
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
YSLNSIGP +E G ++ Y ++ +A + SYRFC +P++GASGA+FGL G+ AV+
Sbjct: 115 MYSLNSIGPLVEATFGREQFCATYLAAGLAGNYASYRFCPTPSLGASGAVFGLAGALAVY 174
Query: 251 IMRHRNILGGGKE-ELQHLAKVIIFNM 276
+ RH+++LG + +L+ + + NM
Sbjct: 175 LQRHKHLLGERADMQLKQIGSALAVNM 201
>gi|212275626|ref|NP_001130636.1| uncharacterized protein LOC100191736 [Zea mays]
gi|194689702|gb|ACF78935.1| unknown [Zea mays]
gi|414589614|tpg|DAA40185.1| TPA: hypothetical protein ZEAMMB73_944913 [Zea mays]
Length = 148
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/91 (62%), Positives = 72/91 (79%)
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
+ NC+SLNSIGP +E + GPRRYL VYFSSA+A S MSYRF SPAVGASGAIFGLVG+
Sbjct: 2 MQFNCFSLNSIGPMVEMLSGPRRYLAVYFSSALAGSLMSYRFSASPAVGASGAIFGLVGA 61
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMV 277
+AV++ RHR G +E L+H+ +V++ NMV
Sbjct: 62 YAVYMWRHRRFFGNSRESLEHIGRVVVLNMV 92
>gi|412988740|emb|CCO15331.1| Rhomboid family protein [Bathycoccus prasinos]
Length = 249
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 93/156 (59%), Gaps = 1/156 (0%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
R+ T+ LL + Y Q T+ K AK+N + GQ++RL TSAFLH + HL VN
Sbjct: 73 RKATDALLLSLLAGYSLQLLTRQKATAAFAKVNENVSNGQYYRLLTSAFLHGGLVHLFVN 132
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
YS+N+IG +E+I G + SA++ + SY+ PAVGASGAIFGL G+FAV+
Sbjct: 133 MYSVNAIGSAVERIFGKTHTYAAFTLSALSGNIASYKMSKYPAVGASGAIFGLAGAFAVY 192
Query: 251 IMRHRNILGGGKEE-LQHLAKVIIFNMVCSAAFANI 285
+ RH+++LG G EE L L ++ N V A A +
Sbjct: 193 LYRHKDVLGSGAEEQLNALGTSLMINAVYGATSARV 228
>gi|428163351|gb|EKX32426.1| hypothetical protein GUITHDRAFT_166710 [Guillardia theta CCMP2712]
Length = 353
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 97/155 (62%), Gaps = 4/155 (2%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLID-KGQFWRLATSAFLHANIAHLMV 189
R T+ L VNV+V++ Q TQ LL GAKI S+I + Q++RL T FLH +++H++V
Sbjct: 142 RAVTDFFLIVNVVVFLLQLLTQGALLEAGAKITSMIVYERQYYRLLTPIFLHGSLSHILV 201
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS--PAVGASGAIFGLVGSF 247
NC+SLN+IGP +E+ G R + Y + IA + S+ F P+VGASGAIFGLVG+
Sbjct: 202 NCFSLNAIGPQVERYFGTERTVITYLLAGIAGNVASFYFGPKLIPSVGASGAIFGLVGAL 261
Query: 248 AVFIMRHRNILGG-GKEELQHLAKVIIFNMVCSAA 281
VF+ RH++I G + L + + I N++ A
Sbjct: 262 GVFLARHQDIFGDRSRYMLNGIIQTCILNLIIGLA 296
>gi|255526224|ref|ZP_05393142.1| Rhomboid family protein [Clostridium carboxidivorans P7]
gi|296185575|ref|ZP_06853984.1| peptidase, S54 (rhomboid) family protein [Clostridium
carboxidivorans P7]
gi|255510064|gb|EET86386.1| Rhomboid family protein [Clostridium carboxidivorans P7]
gi|296049703|gb|EFG89128.1| peptidase, S54 (rhomboid) family protein [Clostridium
carboxidivorans P7]
Length = 323
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 98/160 (61%), Gaps = 10/160 (6%)
Query: 134 TNILLAVNVLVYIA------QFATQD--KLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ VNVL YI F + L+ GAK+N LI +G+++RL T FLH I
Sbjct: 141 TYILITVNVLAYIVTAYLSGNFVDSNINVLVFLGAKVNYLIARGEYYRLITCMFLHGGIM 200
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
HL++N ++L S+GP +EKI G RYL +YF S I SS SY F + ++GASGAIFGL+G
Sbjct: 201 HLLLNMFALYSLGPFIEKIYGKTRYLIIYFLSGIVSSIFSYMFSTAVSIGASGAIFGLLG 260
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
+ +F M+ ++ +G G + ++ VI N+ + +N+
Sbjct: 261 AALIFAMKMKDRIGRGF--ITNIVSVIFINLFMGFSMSNV 298
>gi|251778447|ref|ZP_04821367.1| rhomboid family protein [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|243082762|gb|EES48652.1| rhomboid family protein [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 321
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 103/167 (61%), Gaps = 11/167 (6%)
Query: 128 FIGRQWTNILLAVNVLVYIA------QFATQD--KLLLWGAKINSLIDKGQFWRLATSAF 179
I ++ T IL+A+NV+V++ T D LL GAK N LI +G+ WRL T AF
Sbjct: 133 LINKKSTLILIAINVIVFLLTVFISRSILTIDINVLLNLGAKYNPLIYQGEVWRLVTCAF 192
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASG 238
LH I HL+ N Y+L +GP +EKI G ++YL +YF SAI SS++ N+ +VGASG
Sbjct: 193 LHGGITHLLFNMYALYILGPQVEKIFGIKKYLIIYFVSAITSSSLGVALNKNTISVGASG 252
Query: 239 AIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
AIFGL+G+ VF ++ R+ + KE + +L VII N++ +NI
Sbjct: 253 AIFGLLGAILVFSIKQRHKV--EKEYILNLIGVIILNLLIGFNISNI 297
>gi|451821413|ref|YP_007457614.1| rhomboid protease GluP [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451787392|gb|AGF58360.1| rhomboid protease GluP [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 332
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 102/167 (61%), Gaps = 11/167 (6%)
Query: 128 FIGRQWTNILLAVNVLVYI-------AQFATQDKLLL-WGAKINSLIDKGQFWRLATSAF 179
F + T+ L+ +N+ +++ + F K+LL +GAK N+LIDKGQ WRL T AF
Sbjct: 138 FENKLLTSGLIVINIAIFLITAFLSGSLFDIDTKVLLDYGAKYNALIDKGQVWRLLTCAF 197
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASG 238
LH+ + H+ N YSL IGP +E+I G +YL +Y S+I +SA+SY +S +VGASG
Sbjct: 198 LHSGLIHIACNMYSLYIIGPQIEQIYGTLKYLIIYIVSSITASALSYFMSPDSISVGASG 257
Query: 239 AIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
AIFGL+G+ F RN + K+ + L +VII N+ + +NI
Sbjct: 258 AIFGLMGALLAFAFIERNKI--QKKYMSSLMQVIIINLFIGLSISNI 302
>gi|170761626|ref|YP_001785737.1| membrane associated peptidase [Clostridium botulinum A3 str. Loch
Maree]
gi|169408615|gb|ACA57026.1| putative membrane associated peptidase [Clostridium botulinum A3
str. Loch Maree]
Length = 341
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 90/138 (65%), Gaps = 3/138 (2%)
Query: 149 FATQDKLLLW-GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
F + K+L++ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LN+IGP +E G
Sbjct: 179 FTSDIKVLIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGK 238
Query: 208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQH 267
+YL +YF S I SS SY F S ++GASGAIFG++G A I+ + N GGKE L +
Sbjct: 239 VKYLIIYFISGILSSYFSYLFSASVSIGASGAIFGILG--ATLIIAYTNRKKGGKEFLNN 296
Query: 268 LAKVIIFNMVCSAAFANI 285
+ VI+ N++ + N+
Sbjct: 297 IISVIVVNLILGFSIPNV 314
>gi|168181264|ref|ZP_02615928.1| peptidase, S54 family [Clostridium botulinum Bf]
gi|237793720|ref|YP_002861272.1| putative membrane associated peptidase [Clostridium botulinum Ba4
str. 657]
gi|182675329|gb|EDT87290.1| peptidase, S54 family [Clostridium botulinum Bf]
gi|229262482|gb|ACQ53515.1| putative membrane associated peptidase [Clostridium botulinum Ba4
str. 657]
Length = 342
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 90/138 (65%), Gaps = 3/138 (2%)
Query: 149 FATQDKLLLW-GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
F + K+L++ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LN+IGP +E G
Sbjct: 179 FTSDIKVLIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGK 238
Query: 208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQH 267
+YL +YF S I SS SY F S ++GASGAIFG++G A I+ + N GGKE L +
Sbjct: 239 VKYLIIYFISGILSSYFSYLFSASVSIGASGAIFGILG--ATLIIAYTNRKKGGKEFLNN 296
Query: 268 LAKVIIFNMVCSAAFANI 285
+ VI+ N++ + N+
Sbjct: 297 IISVIVVNLILGFSIPNV 314
>gi|303275255|ref|XP_003056925.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461277|gb|EEH58570.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 392
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 95/171 (55%), Gaps = 1/171 (0%)
Query: 106 GGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSL 165
GG +S G D T+ R T+ LL + Y+ Q T GAK+N+
Sbjct: 151 GGGAGSSSPRGGRRYDGGLTSGDPRRAATDALLWTTAIGYVLQVLTGHAFTAMGAKVNAE 210
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
I GQ +RL T LH + HL+VNC SL+++GP +E+ G ++G+Y +S I + +S
Sbjct: 211 IAAGQVYRLVTPLLLHGSPLHLLVNCMSLHNLGPVIERQFGRDSFVGLYLASGIGGNYLS 270
Query: 226 YRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGG-GKEELQHLAKVIIFN 275
Y+ C + AVGASGAIFGLVG+ V++ RH ++ G G +LQ L + N
Sbjct: 271 YKMCPNNAVGASGAIFGLVGAMGVYLHRHSDLFGAVGDRQLQSLLGSVGVN 321
>gi|188589117|ref|YP_001920138.1| rhomboid family protein [Clostridium botulinum E3 str. Alaska E43]
gi|188499398|gb|ACD52534.1| rhomboid family protein [Clostridium botulinum E3 str. Alaska E43]
Length = 321
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 103/167 (61%), Gaps = 11/167 (6%)
Query: 128 FIGRQWTNILLAVNVLVYIA------QFATQD--KLLLWGAKINSLIDKGQFWRLATSAF 179
I ++ T IL+A+NV+V++ T D LL +GAK N LI +G+ WRL AF
Sbjct: 133 LINKKSTLILIAINVIVFLLTVFISRSILTIDINVLLNFGAKYNPLIYQGEVWRLVACAF 192
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASG 238
LH I HL+ N Y+L +GP +EKI G ++YL +YF SAI SS++ N+ +VGASG
Sbjct: 193 LHGGITHLLFNMYALYILGPQVEKIFGIKKYLIIYFVSAITSSSLGVALNKNTISVGASG 252
Query: 239 AIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
AIFGL+G+ VF ++ R+ + KE + +L VII N++ +NI
Sbjct: 253 AIFGLLGAILVFSIKQRHKV--EKEYILNLLGVIILNLLIGFNISNI 297
>gi|376261459|ref|YP_005148179.1| hypothetical protein [Clostridium sp. BNL1100]
gi|373945453|gb|AEY66374.1| putative membrane protein [Clostridium sp. BNL1100]
Length = 519
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 99/171 (57%), Gaps = 14/171 (8%)
Query: 102 FFNGGGTRKNSGHEGTSHLDTARTNLF-----IGRQW-TNILLAVNVLVY-IAQF----- 149
FF+ G R+ + ++ + R F + W T I++A+N+++Y + Q
Sbjct: 147 FFSKGLDRRETDYQDIEGIIEKRKKDFEIQFKVQTPWLTYIIIALNIVMYGLLQLVSMKT 206
Query: 150 --ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
A + +L +GAK+N+LI +GQ+WR FLHA+I HL VNCYS+ IG +EKI G
Sbjct: 207 GTAYEQQLEPFGAKVNNLIMEGQYWRFFAPMFLHADIVHLAVNCYSIYIIGSQVEKIFGR 266
Query: 208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNIL 258
R+L +YF S SA S+ F + +VGASGAIFGLVG+ F +R +L
Sbjct: 267 GRFLAIYFVSGFIGSAASFAFSLNSSVGASGAIFGLVGAMLYFSLRRPALL 317
>gi|326202014|ref|ZP_08191884.1| Rhomboid family protein [Clostridium papyrosolvens DSM 2782]
gi|325987809|gb|EGD48635.1| Rhomboid family protein [Clostridium papyrosolvens DSM 2782]
Length = 519
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 99/171 (57%), Gaps = 14/171 (8%)
Query: 102 FFNGGGTRKNSGHEGTSHLDTARTNLF-----IGRQW-TNILLAVNVLVY----IAQFAT 151
FF+ G ++ + ++ + R F W T I++A+NVL+Y + T
Sbjct: 147 FFSKGLEKRETDYKDIEDIIENRKKDFEIQFKAKTPWLTYIIIAMNVLMYGLLRLVAMKT 206
Query: 152 ----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
+ +L +GAK+N+LI +GQ+WR T FLHA+I HL VNCYS+ IG +EKI G
Sbjct: 207 GTSYEQQLEPFGAKVNNLIMEGQYWRFFTPMFLHADIVHLAVNCYSIYIIGAQVEKIFGR 266
Query: 208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNIL 258
R+L +YF + + SA S+ F + +VGASGAIFGLVG+ F +R +L
Sbjct: 267 GRFLAIYFVAGLIGSAASFAFSLNSSVGASGAIFGLVGAMLYFSLRRPALL 317
>gi|187934985|ref|YP_001884978.1| rhomboid family protein [Clostridium botulinum B str. Eklund 17B]
gi|187723138|gb|ACD24359.1| rhomboid family protein [Clostridium botulinum B str. Eklund 17B]
Length = 321
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 90/134 (67%), Gaps = 9/134 (6%)
Query: 131 RQWTNILLAVNVLVYIA------QFATQD--KLLLWGAKINSLIDKGQFWRLATSAFLHA 182
++ T IL+A+NV++++ + T D L+ +GAK N LI +G+ WRL T AFLH
Sbjct: 136 KKSTLILIAMNVIIFLLTAFISRRILTIDINVLINFGAKYNPLIYQGEIWRLITCAFLHG 195
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
IAHL+ N YSL +GP +E+I G ++YL +YF+SAI SS +S NS +VGASGAIF
Sbjct: 196 GIAHLLSNMYSLYILGPQVERIFGLKKYLCIYFTSAITSSLLSVLLNENSVSVGASGAIF 255
Query: 242 GLVGSFAVFIMRHR 255
GL+G+ +F ++ R
Sbjct: 256 GLLGAILIFSIKER 269
>gi|255077864|ref|XP_002502512.1| rhomboid-like protein [Micromonas sp. RCC299]
gi|226517777|gb|ACO63770.1| rhomboid-like protein [Micromonas sp. RCC299]
Length = 336
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 86/146 (58%), Gaps = 1/146 (0%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
R T+ LL Y+ Q + GAK+N+ I +G+ WRL T LH + HLMVN
Sbjct: 115 RALTDALLWATAGGYVLQLLSGHAFTAVGAKVNAKIAQGEVWRLLTPLLLHGSALHLMVN 174
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
C SLN++GP +E+ G +++ VY S + + +SY+ C + AVGAS AIFGLVG+ ++
Sbjct: 175 CMSLNNLGPVVERQFGREQFMAVYLGSGLLGNFLSYKRCPNNAVGASSAIFGLVGALGIY 234
Query: 251 IMRHRNILGG-GKEELQHLAKVIIFN 275
+ RHR++ G G + Q+L + N
Sbjct: 235 LNRHRDLFGDYGDKVFQNLLGSVGLN 260
>gi|168186765|ref|ZP_02621400.1| conserved membrane protein [Clostridium botulinum C str. Eklund]
gi|169295367|gb|EDS77500.1| conserved membrane protein [Clostridium botulinum C str. Eklund]
Length = 202
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 92/162 (56%), Gaps = 10/162 (6%)
Query: 132 QWTNILLAVNVLVYIAQFATQDK--------LLLWGAKINSLIDKGQFWRLATSAFLHAN 183
+ T IL+ +NVLVYI + LL GA N+L+ GQ++RL T FLH
Sbjct: 22 RVTFILITINVLVYIITAILSENILDSDIRVLLFLGANENTLVSSGQYYRLITCMFLHGG 81
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGL 243
+ HL +N Y+L +IGP +E+I G +Y+ +Y + SS SY F ++GASGAIF L
Sbjct: 82 LVHLALNMYALEAIGPIVERIYGKMKYIIIYLVGGLISSLSSYVFSTGVSIGASGAIFAL 141
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
+G+ V ++ R+++ GK ++++ VI N+ A NI
Sbjct: 142 LGAMFVLTIKMRDVV--GKAVIKNIVSVIGINIFIGLAIPNI 181
>gi|309792360|ref|ZP_07686828.1| Rhomboid family protein [Oscillochloris trichoides DG-6]
gi|308225581|gb|EFO79341.1| Rhomboid family protein [Oscillochloris trichoides DG6]
Length = 240
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 85/134 (63%), Gaps = 1/134 (0%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ GAK+N LI G +WRL ++ FLH ++ H++ N Y+L ++GP E+I G RR+L +Y
Sbjct: 45 LVFLGAKVNELIAAGAYWRLLSATFLHGSLIHILFNGYALYALGPETERIYGTRRFLALY 104
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGG-GKEELQHLAKVII 273
F + + S SY S +VGASGAIFGL+G +F +R +LG GK ++Q++A V +
Sbjct: 105 FLAGLGGSLASYLLSPSVSVGASGAIFGLIGGLGIFYYLNRAVLGNFGKAQVQNMATVAL 164
Query: 274 FNMVCSAAFANIVK 287
N+ + +I+
Sbjct: 165 INLFIGFSAPSIID 178
>gi|220929279|ref|YP_002506188.1| rhomboid family protein [Clostridium cellulolyticum H10]
gi|219999607|gb|ACL76208.1| Rhomboid family protein [Clostridium cellulolyticum H10]
Length = 519
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 124/252 (49%), Gaps = 39/252 (15%)
Query: 21 TRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENA 80
+ P ++ + +H + ++ +R + ++ S K+ + +P A
Sbjct: 91 STPDMDKVEIIKQHQMDITSEKRFMKCISVNI------SAKQAEKYFSVP---------A 135
Query: 81 FRFNGVNFFRFTNDAFASSLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQ-----W-T 134
F V F+ FF+ G ++ + ++ + R F + W T
Sbjct: 136 FDAGLVKSFK----------RFFSKGLDKRETSYKDIEDVIEKRKKDFEIQSKAETPWLT 185
Query: 135 NILLAVNVLVY-IAQF-------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
I++A N++++ + Q A Q +L +GAK+N+LI +GQ+WR + FLH +I H
Sbjct: 186 YIIIAFNIVMWGLLQLVSMRTGTAYQQQLEPFGAKVNNLIMEGQYWRFISPMFLHGDIVH 245
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
L VNCYSL IG +EKI G R+L +YF S SA S+ F + +VGASGAIFGLVG+
Sbjct: 246 LAVNCYSLYIIGSQVEKIFGRGRFLAIYFVSGFIGSAASFAFSLNSSVGASGAIFGLVGA 305
Query: 247 FAVFIMRHRNIL 258
F +R +L
Sbjct: 306 MLYFSLRRPALL 317
>gi|359414482|ref|ZP_09206947.1| Rhomboid family protein [Clostridium sp. DL-VIII]
gi|357173366|gb|EHJ01541.1| Rhomboid family protein [Clostridium sp. DL-VIII]
Length = 332
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 103/189 (54%), Gaps = 16/189 (8%)
Query: 106 GGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQ-------FATQDKLLLW 158
G + N G S + N+ T IL+ +N++V++ F ++L++
Sbjct: 121 GNLQINERKNGQSKKEHKNYNIL-----TFILIGINIVVFLLTAFISGNIFDIDTRVLIY 175
Query: 159 -GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
GAKIN LID G+ WRL T AFLH+ + H++ N YSL IGP +E+I G R+YL +Y S
Sbjct: 176 FGAKINILIDHGEIWRLLTCAFLHSGLIHIVCNMYSLYIIGPQIEQIYGIRKYLIIYLIS 235
Query: 218 AIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNM 276
I +S SY N A+GASG IFGL+G+ F + RN + K+ L L ++I N+
Sbjct: 236 CITASISSYFLNPNGIAIGASGGIFGLMGALLAFALIERNRI--QKKFLSSLLQIIAINL 293
Query: 277 VCSAAFANI 285
+ NI
Sbjct: 294 FIGLSIKNI 302
>gi|159482562|ref|XP_001699338.1| rhomboid-like protein [Chlamydomonas reinhardtii]
gi|158272974|gb|EDO98768.1| rhomboid-like protein [Chlamydomonas reinhardtii]
Length = 406
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 100/181 (55%), Gaps = 10/181 (5%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
R+ T++ L +N LV++ + ++D +L+WGAK+N+LI GQ+WRL T FLH+N+ HL +N
Sbjct: 90 RRTTDVFLCLNALVFVLNWLSRDVVLIWGAKVNALIAAGQWWRLVTPLFLHSNLFHLAIN 149
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
++L+++GP +E + G RR +Y +SA S+ P G + A+FGL + VF
Sbjct: 150 MHALHTLGPQVEVVSGSRRTAAIYMASASCSA-------RCPVWGPAAAMFGLGAALGVF 202
Query: 251 IMRHRNILGGGKEE-LQHLAKVIIFNMVCSAAFANIVKIESRHTLTGET--CYFIDPSKQ 307
RH ++LG + L+ L + N+ S I L G Y + P+ Q
Sbjct: 203 YWRHADLLGPASDSGLRSLGLTAVINIAYSLVNKRIDNWGHFGGLVGGALLSYLVGPAFQ 262
Query: 308 M 308
+
Sbjct: 263 V 263
>gi|148657883|ref|YP_001278088.1| rhomboid family protein [Roseiflexus sp. RS-1]
gi|148569993|gb|ABQ92138.1| Rhomboid family protein [Roseiflexus sp. RS-1]
Length = 283
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 94/156 (60%), Gaps = 15/156 (9%)
Query: 136 ILLAVNVLVYIAQF-------------ATQDKLLLWGAKINSLID-KGQFWRLATSAFLH 181
ILL +N+LV++ + + + L+WGAK N+ I GQ++R T+ FLH
Sbjct: 50 ILLTINILVFVGPWLLDVIGIRIAGVVSVYELTLIWGAKENAAISIGGQYYRFLTAMFLH 109
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIF 241
+IAHL N ++L S+G E+I G +R+L +Y + + MSY F +P+VGASGAIF
Sbjct: 110 GSIAHLFFNSFALYSLGFEAERIFGSQRFLALYLIAGLGGGVMSYAFNPNPSVGASGAIF 169
Query: 242 GLVGSFAVFIMRHRNILGG-GKEELQHLAKVIIFNM 276
GL+G+ F + R++LGG +++L L V++ N+
Sbjct: 170 GLIGALIAFYVVARSVLGGIARQQLGSLIFVVMINL 205
>gi|153955340|ref|YP_001396105.1| hypothetical protein CKL_2722 [Clostridium kluyveri DSM 555]
gi|219855759|ref|YP_002472881.1| hypothetical protein CKR_2416 [Clostridium kluyveri NBRC 12016]
gi|146348198|gb|EDK34734.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
gi|219569483|dbj|BAH07467.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 338
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 99/160 (61%), Gaps = 10/160 (6%)
Query: 134 TNILLAVNVLVYIA--------QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T +++A+NVLVYI + + L+ GAK+N LI KGQ++RL T FLHA I
Sbjct: 154 TYVIIALNVLVYIVTSYLSGSIMDSNVNVLVFMGAKVNFLIAKGQYYRLFTCMFLHAGIV 213
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
HL VN YSL +G +EK+ G +Y+ +Y S + SS SY F +S +VGASGAIFGL+G
Sbjct: 214 HLGVNMYSLYMMGTFIEKVYGKLKYIIIYIISGLFSSIFSYMFSSSISVGASGAIFGLLG 273
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
+ VF ++ ++ +E + ++ +I+ N++ + AN+
Sbjct: 274 ASLVFALKMKH--SVAREFIMNIVAIIVMNLIIGFSIANV 311
>gi|357128745|ref|XP_003566030.1| PREDICTED: rhomboid protease gluP-like [Brachypodium distachyon]
Length = 267
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 77/124 (62%), Gaps = 11/124 (8%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHL-----------MVNCYSLNSIGPTMEKICGPRRYL 211
N+LI KGQ WRLATS LH + HL +VN SL +GP +E+ GPRR+L
Sbjct: 81 NALIKKGQIWRLATSCLLHGGLIHLAVRVSASVDIAVVNNVSLREVGPEVEEATGPRRFL 140
Query: 212 GVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+Y +SA+ S MSY F P++GASGAI GL+G+ AV++ R++ L +E L+H+
Sbjct: 141 AIYCTSAVTGSLMSYWFSARPSIGASGAICGLIGAQAVYVWRNQEYLEKSEETLKHIRYD 200
Query: 272 IIFN 275
++ N
Sbjct: 201 VLLN 204
>gi|187776993|ref|ZP_02993466.1| hypothetical protein CLOSPO_00538 [Clostridium sporogenes ATCC
15579]
gi|187773921|gb|EDU37723.1| peptidase, S54 family [Clostridium sporogenes ATCC 15579]
Length = 344
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/131 (45%), Positives = 87/131 (66%), Gaps = 2/131 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LNSIGP +E G +YL +Y
Sbjct: 186 LIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNSIGPLVEIYFGKVKYLIIY 245
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
F S I SS SY F +S ++GASGAIFG +G A FI+ ++N GGKE L ++ VI+
Sbjct: 246 FISGILSSYFSYLFSSSVSIGASGAIFGTLG--ATFIIAYKNRKRGGKEFLNNIISVIVI 303
Query: 275 NMVCSAAFANI 285
N++ + N+
Sbjct: 304 NLILGFSIPNV 314
>gi|404370657|ref|ZP_10975977.1| hypothetical protein CSBG_02042 [Clostridium sp. 7_2_43FAA]
gi|226913215|gb|EEH98416.1| hypothetical protein CSBG_02042 [Clostridium sp. 7_2_43FAA]
Length = 325
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 85/132 (64%), Gaps = 3/132 (2%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ GAK+N LI+ G+ +RL TSAFLH I H+ N +LN IG +E + G +RY+ +Y
Sbjct: 168 LIQMGAKVNVLINSGEIYRLLTSAFLHGGIIHIFFNMSALNIIGREVEAVYGSKRYIAIY 227
Query: 215 FSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVII 273
SA+ S +SY F NS +VGASGAIFGL+G+ +F ++ R+ + GK+ ++++ + I
Sbjct: 228 VISALGGSVVSYLFKPNSISVGASGAIFGLLGAMLIFGLKERDKI--GKQYMKNILETIG 285
Query: 274 FNMVCSAAFANI 285
N++ NI
Sbjct: 286 LNVIIGITIPNI 297
>gi|410728950|ref|ZP_11367038.1| putative membrane protein [Clostridium sp. Maddingley MBC34-26]
gi|410596504|gb|EKQ51173.1| putative membrane protein [Clostridium sp. Maddingley MBC34-26]
Length = 332
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 99/172 (57%), Gaps = 11/172 (6%)
Query: 123 ARTNLFIGRQWTNILLAVNVLVYIA----QFATQDK----LLLWGAKINSLIDKGQFWRL 174
+ N F + T IL+ +NV++++ F D L+ +GAK+N LI++GQ WRL
Sbjct: 136 VKKNFFQYQVLTYILIGINVIIFLLTAFLSFDIYDINTGILIDFGAKVNILINQGQIWRL 195
Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPA 233
T AFLH+ + H+ N YSL IGP +++I G +YL +Y S + +S +SY NS +
Sbjct: 196 FTCAFLHSGLIHIACNMYSLYIIGPQIQQIFGTVKYLIIYACSCLTASLLSYYMSPNSIS 255
Query: 234 VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
VGASGAIFGL+G+ F + RN + K L + +VI N+ + NI
Sbjct: 256 VGASGAIFGLMGALLAFAIIERNRI--QKRFLFSIMQVISINLFIGLSIKNI 305
>gi|163846340|ref|YP_001634384.1| rhomboid family protein [Chloroflexus aurantiacus J-10-fl]
gi|222524105|ref|YP_002568576.1| rhomboid family protein [Chloroflexus sp. Y-400-fl]
gi|163667629|gb|ABY33995.1| Rhomboid family protein [Chloroflexus aurantiacus J-10-fl]
gi|222447984|gb|ACM52250.1| Rhomboid family protein [Chloroflexus sp. Y-400-fl]
Length = 271
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 78/130 (60%), Gaps = 1/130 (0%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
GAKIN I G+ WRL T+ FLHAN+ H+ N Y+L+ +GP E+ G R+L +Y S
Sbjct: 80 GAKINERIADGELWRLLTAVFLHANLIHIFFNGYALSVLGPETERFYGHGRFLALYLISG 139
Query: 219 IASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGG-GKEELQHLAKVIIFNMV 277
+ S SY +PAVGASGAIFGL+G VF +R +LG G+ +++ + + + N++
Sbjct: 140 LGGSIASYALSPAPAVGASGAIFGLIGGLGVFYYLNRRVLGEFGQNQVRGIVAIALINLL 199
Query: 278 CSAAFANIVK 287
A ++
Sbjct: 200 IGFAAQGVID 209
>gi|219849715|ref|YP_002464148.1| rhomboid family protein [Chloroflexus aggregans DSM 9485]
gi|219543974|gb|ACL25712.1| Rhomboid family protein [Chloroflexus aggregans DSM 9485]
Length = 271
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 83/138 (60%), Gaps = 1/138 (0%)
Query: 151 TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRY 210
T L++ GAK+N I G+ WRL T+ LHAN+ H+ N Y+L+ +GP E+ G R+
Sbjct: 72 TLSVLVVLGAKVNERIAAGEVWRLLTATVLHANLIHIFFNGYALSVLGPETERFYGHVRF 131
Query: 211 LGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGG-GKEELQHLA 269
L +Y S + S SY ++PAVGASGAIFGL+G +F +R +LG G+++++ +
Sbjct: 132 LVLYLLSGVGGSIASYALSSAPAVGASGAIFGLIGGLGMFYYLNRQVLGQFGQDQVRGIV 191
Query: 270 KVIIFNMVCSAAFANIVK 287
+ + N++ A ++
Sbjct: 192 AIAVINLLIGFAAQGVID 209
>gi|424826465|ref|ZP_18251350.1| S54 family peptidase [Clostridium sporogenes PA 3679]
gi|365980910|gb|EHN16927.1| S54 family peptidase [Clostridium sporogenes PA 3679]
Length = 343
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/131 (45%), Positives = 86/131 (65%), Gaps = 2/131 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LNSIGP +E G +YL +Y
Sbjct: 186 LIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNSIGPLVEIYFGKVKYLIIY 245
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
F S I SS SY F +S ++GASGAIFG +G A I+ ++N GGKE L ++ VI+
Sbjct: 246 FISGILSSYFSYLFSSSVSIGASGAIFGTLG--ATLIIAYKNRKKGGKEFLNNIISVIVI 303
Query: 275 NMVCSAAFANI 285
N++ + N+
Sbjct: 304 NLILGFSIPNV 314
>gi|170756233|ref|YP_001780053.1| membrane associated peptidase [Clostridium botulinum B1 str. Okra]
gi|429244301|ref|ZP_19207768.1| membrane associated peptidase [Clostridium botulinum CFSAN001628]
gi|169121445|gb|ACA45281.1| putative membrane associated peptidase [Clostridium botulinum B1
str. Okra]
gi|428758682|gb|EKX81087.1| membrane associated peptidase [Clostridium botulinum CFSAN001628]
Length = 341
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 91/138 (65%), Gaps = 3/138 (2%)
Query: 149 FATQDKLLLW-GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
F + K+L++ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LN+IGP +E G
Sbjct: 179 FTSDIKVLIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGK 238
Query: 208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQH 267
+YL +YF S I SS SY F +S ++GASGAIFG++G A I+ + N GGKE L +
Sbjct: 239 AKYLIIYFISGILSSYFSYLFSSSVSIGASGAIFGILG--ATLIIAYTNRKKGGKEFLNN 296
Query: 268 LAKVIIFNMVCSAAFANI 285
+ VI+ N++ + N+
Sbjct: 297 IISVIVVNLILGFSIPNV 314
>gi|168177744|ref|ZP_02612408.1| putative membrane associated peptidase [Clostridium botulinum NCTC
2916]
gi|387816637|ref|YP_005676981.1| membrane protein [Clostridium botulinum H04402 065]
gi|182671461|gb|EDT83435.1| putative membrane associated peptidase [Clostridium botulinum NCTC
2916]
gi|322804678|emb|CBZ02230.1| conserved membrane protein [Clostridium botulinum H04402 065]
Length = 340
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 91/138 (65%), Gaps = 3/138 (2%)
Query: 149 FATQDKLLLW-GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
F + K+L++ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LN+IGP +E G
Sbjct: 179 FTSDIKVLIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGK 238
Query: 208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQH 267
+YL +YF S I SS SY F +S ++GASGAIFG++G A I+ + N GGKE L +
Sbjct: 239 VKYLIIYFISGILSSYFSYLFSSSVSIGASGAIFGILG--ATLIIAYTNRKKGGKEFLNN 296
Query: 268 LAKVIIFNMVCSAAFANI 285
+ VI+ N++ + N+
Sbjct: 297 IISVIVVNLILGFSIPNV 314
>gi|153938565|ref|YP_001389769.1| S54 family peptidase [Clostridium botulinum F str. Langeland]
gi|384460841|ref|YP_005673436.1| peptidase, S54 (rhomboid) family [Clostridium botulinum F str.
230613]
gi|152934461|gb|ABS39959.1| peptidase, S54 (rhomboid) family [Clostridium botulinum F str.
Langeland]
gi|295317858|gb|ADF98235.1| peptidase, S54 (rhomboid) family [Clostridium botulinum F str.
230613]
Length = 340
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 91/138 (65%), Gaps = 3/138 (2%)
Query: 149 FATQDKLLLW-GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
F + K+L++ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LN+IGP +E G
Sbjct: 179 FTSDIKVLIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGK 238
Query: 208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQH 267
+YL +YF S I SS SY F +S ++GASGAIFG++G A I+ + N GGKE L +
Sbjct: 239 VKYLIIYFISGILSSYFSYLFSSSVSIGASGAIFGILG--ATLIIAYTNRKKGGKEFLNN 296
Query: 268 LAKVIIFNMVCSAAFANI 285
+ VI+ N++ + N+
Sbjct: 297 IISVIVVNLILGFSIPNV 314
>gi|226947631|ref|YP_002802722.1| peptidase, S54 [Clostridium botulinum A2 str. Kyoto]
gi|226842288|gb|ACO84954.1| peptidase, S54 [Clostridium botulinum A2 str. Kyoto]
Length = 340
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 91/138 (65%), Gaps = 3/138 (2%)
Query: 149 FATQDKLLLW-GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
F + K+L++ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LN+IGP +E G
Sbjct: 179 FTSDIKVLIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGK 238
Query: 208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQH 267
+YL +YF S I SS SY F +S ++GASGAIFG++G A I+ + N GGKE L +
Sbjct: 239 VKYLIIYFISGILSSYFSYLFSSSVSIGASGAIFGILG--ATLIIAYANRKKGGKEFLNN 296
Query: 268 LAKVIIFNMVCSAAFANI 285
+ VI+ N++ + N+
Sbjct: 297 IISVIVVNLILGFSIPNV 314
>gi|148378401|ref|YP_001252942.1| membrane associated peptidase [Clostridium botulinum A str. ATCC
3502]
gi|148287885|emb|CAL81951.1| putative membrane associated peptidase [Clostridium botulinum A
str. ATCC 3502]
Length = 337
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 91/138 (65%), Gaps = 3/138 (2%)
Query: 149 FATQDKLLLW-GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
F + K+L++ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LN+IGP +E G
Sbjct: 179 FTSDIKVLIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGK 238
Query: 208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQH 267
+YL +YF S + SS SY F +S ++GASGAIFG++G A I+ + N GGKE L +
Sbjct: 239 VKYLIIYFISGVLSSYFSYLFSSSVSIGASGAIFGILG--ATLIIAYTNRKKGGKEFLNN 296
Query: 268 LAKVIIFNMVCSAAFANI 285
+ VI+ N++ + N+
Sbjct: 297 IISVIVVNLILGFSIPNV 314
>gi|429764176|ref|ZP_19296501.1| peptidase, S54 family [Clostridium celatum DSM 1785]
gi|429188574|gb|EKY29452.1| peptidase, S54 family [Clostridium celatum DSM 1785]
Length = 324
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/132 (43%), Positives = 82/132 (62%), Gaps = 3/132 (2%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L++ GAK+N LI+ GQ WRL T FLH +AH+ N Y+L IG +E G +Y+ +Y
Sbjct: 169 LVIMGAKVNELINHGQVWRLITCTFLHGGLAHIAFNMYALKIIGSEVEFAYGKIKYILIY 228
Query: 215 FSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVII 273
SA+ S SY F NS +VGASGAIFGL G+ VF +++R+ + GK + +L KV+I
Sbjct: 229 LFSALGGSIFSYIFSPNSISVGASGAIFGLFGAMLVFGVKNRHRI--GKNYVINLFKVVI 286
Query: 274 FNMVCSAAFANI 285
N+ +NI
Sbjct: 287 INIFIGVTISNI 298
>gi|431793836|ref|YP_007220741.1| hypothetical protein Desdi_1896 [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430784062|gb|AGA69345.1| putative membrane protein [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 321
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 90/149 (60%), Gaps = 11/149 (7%)
Query: 107 GTRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVY----IAQFATQDK-LLLWGAK 161
G NSG S T R L T L+ +N+ ++ +A +T L+++GAK
Sbjct: 124 GVPTNSGFSTASEAVTFRPYL------TYSLIFINLFIFAMMTLAGGSTNTGVLIMFGAK 177
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+NSLI +G++WRL TS FLH + HL N Y+L ++GP +E++ G RYL +Y SS +
Sbjct: 178 VNSLILQGEYWRLFTSMFLHIGVIHLAFNLYALWALGPILEELFGRIRYLLIYISSGVMG 237
Query: 222 SAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
SA S+ F ++ + GASGAIFG++G+ V+
Sbjct: 238 SAASFLFTDAISAGASGAIFGILGALVVY 266
>gi|384251749|gb|EIE25226.1| rhomboid-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 278
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 106/195 (54%), Gaps = 16/195 (8%)
Query: 104 NGGGTRKNSG---HEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFAT--------Q 152
+GGG+ + +G G++ D ++ LL +N+ VY A A
Sbjct: 52 DGGGSYQRTGAPMKAGSNKFDIPAVKPYLAYA----LLFLNLAVYGAGIAVALTQGNDAS 107
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
++ L AK+N + G+F+RL T FLHA I HL +NC++L SIGP +E + G +
Sbjct: 108 NEWFLSLAKVNEKVASGEFYRLLTCTFLHAGILHLGLNCWALYSIGPEVEGVMGYSTFAA 167
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
+Y S +A S S+ F + VGASGAIFGL+G+ A + +R+R L G ++L ++A ++
Sbjct: 168 IYVLSGLAGSTASFLFSDLITVGASGAIFGLLGATAGYFLRNRA-LQGSTQQLTYIAGIV 226
Query: 273 IFNMVCSAAFANIVK 287
N+ A+ +++
Sbjct: 227 ALNIFLGASPGSMID 241
>gi|156741085|ref|YP_001431214.1| rhomboid family protein [Roseiflexus castenholzii DSM 13941]
gi|156232413|gb|ABU57196.1| Rhomboid family protein [Roseiflexus castenholzii DSM 13941]
Length = 281
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 97/181 (53%), Gaps = 18/181 (9%)
Query: 112 SGHEGTSHLDTARTNLFIGRQWT-NILLAVNVLVYIAQ-------------FATQDKLLL 157
+G E + R LF W +LL +N++V++ + D LL+
Sbjct: 30 AGPEPSPAAVQVRFPLF--TPWVARVLLTINIIVFVVPSFLDVIGVRIAGTVSVYDFLLI 87
Query: 158 WGAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFS 216
WGAK N+ I GQ++R T+ FLH +AHL N ++L S+G E++ G +R+L +Y
Sbjct: 88 WGAKDNAAIFVGGQYYRFLTAMFLHGGLAHLFFNSFALYSLGFETERLFGAQRFLAIYML 147
Query: 217 SAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGG-GKEELQHLAKVIIFN 275
+ + SY +P+VGASGAIFGL+G+ F + R +LGG +++L L + + N
Sbjct: 148 AGLGGGVASYALNPNPSVGASGAIFGLIGALIAFYLVARRVLGGIARQQLGSLIFITLIN 207
Query: 276 M 276
+
Sbjct: 208 L 208
>gi|125973563|ref|YP_001037473.1| rhomboid family protein [Clostridium thermocellum ATCC 27405]
gi|256003382|ref|ZP_05428373.1| Rhomboid family protein [Clostridium thermocellum DSM 2360]
gi|281417768|ref|ZP_06248788.1| Rhomboid family protein [Clostridium thermocellum JW20]
gi|385778515|ref|YP_005687680.1| rhomboid family protein [Clostridium thermocellum DSM 1313]
gi|419723657|ref|ZP_14250772.1| Rhomboid family protein [Clostridium thermocellum AD2]
gi|419724518|ref|ZP_14251580.1| Rhomboid family protein [Clostridium thermocellum YS]
gi|125713788|gb|ABN52280.1| Rhomboid family protein [Clostridium thermocellum ATCC 27405]
gi|255992672|gb|EEU02763.1| Rhomboid family protein [Clostridium thermocellum DSM 2360]
gi|281409170|gb|EFB39428.1| Rhomboid family protein [Clostridium thermocellum JW20]
gi|316940195|gb|ADU74229.1| Rhomboid family protein [Clostridium thermocellum DSM 1313]
gi|380772065|gb|EIC05923.1| Rhomboid family protein [Clostridium thermocellum YS]
gi|380780339|gb|EIC10022.1| Rhomboid family protein [Clostridium thermocellum AD2]
Length = 511
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 84/140 (60%), Gaps = 9/140 (6%)
Query: 131 RQW-TNILLAVNVLVYI-AQFATQDK-------LLLWGAKINSLIDKGQFWRLATSAFLH 181
+ W T +L+AVN+LV++ + + K L+ +GAK N+ I G++WR T FLH
Sbjct: 178 KPWVTYVLIAVNILVWLLIEIYARSKGVDSSSLLVDFGAKENTHIMMGEYWRFVTPMFLH 237
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIF 241
I HL+VN YSL +G T+E I G R+L +Y + + S +S+ F +P+VGASGAIF
Sbjct: 238 NGITHLVVNSYSLYVLGTTVEMIMGKGRFLFIYLMAGLMGSIVSFIFSIAPSVGASGAIF 297
Query: 242 GLVGSFAVFIMRHRNILGGG 261
GL+G+ + HR + G
Sbjct: 298 GLLGALIYYGTEHRELFKKG 317
>gi|383761642|ref|YP_005440624.1| rhomboid family protein [Caldilinea aerophila DSM 14535 = NBRC
104270]
gi|381381910|dbj|BAL98726.1| rhomboid family protein [Caldilinea aerophila DSM 14535 = NBRC
104270]
Length = 260
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 77/126 (61%), Gaps = 1/126 (0%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+L GAK+N + G+ WRL T FLH+ + HL+ N Y+L +GP +E G R+L V+
Sbjct: 53 LVLMGAKVNERLAAGELWRLVTPIFLHSGVMHLLFNLYALYILGPMLEGYIGHVRFLAVF 112
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGG-GKEELQHLAKVII 273
S + + SY +VGASGAIFGL+G+ A+F +R+R+ G G+ LQ++ ++
Sbjct: 113 LISGLYGTLFSYALSGPVSVGASGAIFGLLGAIALFFLRYRDNFGPQGRAILQNMLIILA 172
Query: 274 FNMVCS 279
N+V
Sbjct: 173 LNLVIG 178
>gi|392393767|ref|YP_006430369.1| hypothetical protein Desde_2230 [Desulfitobacterium dehalogenans
ATCC 51507]
gi|390524845|gb|AFM00576.1| putative membrane protein [Desulfitobacterium dehalogenans ATCC
51507]
Length = 275
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 92/148 (62%), Gaps = 7/148 (4%)
Query: 134 TNILLAVNVLVY----IAQFATQDK-LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+A+N++V+ +A +T+ L+L+GAK+N+LI +G++WRL TS FLH HL
Sbjct: 99 TYTLIAINLIVFALMTLAGGSTRTGVLILFGAKVNALIIQGEYWRLFTSMFLHIGFLHLA 158
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N Y+L ++GP E++ G RY+ VY S I S S+ F ++ + GASGAIFG++G+
Sbjct: 159 FNLYALWALGPIAEELLGRIRYITVYILSGILGSVASFLFTDAISAGASGAIFGILGALV 218
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNM 276
V+ R + G + LA VI+ N+
Sbjct: 219 VYSRRKPFLWKSGFG--KSLAVVILINL 244
>gi|449017499|dbj|BAM80901.1| unknown rhomboid family protein [Cyanidioschyzon merolae strain
10D]
Length = 458
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 85/145 (58%), Gaps = 2/145 (1%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
T+ L A+ +L ++ Q ++ GAK+N+ I G+++RL T FLH N HL+VN S
Sbjct: 254 TDWLAAITILSFLLQLWAGPAYVMAGAKVNAAIRTGEWYRLFTPLFLHGNTLHLIVNLSS 313
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMR 253
L S+GP +E G RRY +Y S + + S+ F +P+VGAS AIFGL+G+ A F +
Sbjct: 314 LKSLGPQIEATYGHRRYAALYLLSGLTGNLFSFFFNTAPSVGASSAIFGLIGAMAAFYVS 373
Query: 254 HRNILGGGKEE--LQHLAKVIIFNM 276
+ + G L+++A V + N+
Sbjct: 374 NTDWFGREHSHRVLRNIAWVTLLNL 398
>gi|326792345|ref|YP_004310166.1| peptidase S9 prolyl oligopeptidase active site domain-containing
protein [Clostridium lentocellum DSM 5427]
gi|326543109|gb|ADZ84968.1| Peptidase S54, rhomboid domain [Clostridium lentocellum DSM 5427]
Length = 518
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 76/122 (62%), Gaps = 8/122 (6%)
Query: 137 LLAVNVLVYIAQFATQ--------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
L+A+N+LVY+A + ++ +GAK+N+LI +G++WR T FLH ++ HL+
Sbjct: 188 LIAINILVYLALVLYERTSGISYGQLIIQFGAKVNNLILEGEYWRFITPIFLHGSLMHLL 247
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
VNCYSL IG +E++ G R++ Y + I + S+ F P+VGASGAIFGL+G
Sbjct: 248 VNCYSLYIIGSLVERLYGRGRFITSYLIAGILGNLCSFLFVPGPSVGASGAIFGLMGILL 307
Query: 249 VF 250
F
Sbjct: 308 YF 309
>gi|150019138|ref|YP_001311392.1| rhomboid family protein [Clostridium beijerinckii NCIMB 8052]
gi|149905603|gb|ABR36436.1| Rhomboid family protein [Clostridium beijerinckii NCIMB 8052]
Length = 328
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 96/184 (52%), Gaps = 15/184 (8%)
Query: 115 EGTSHLDTARTNLFIGRQW-----TNILLAVNVLVYIAQFATQDK--------LLLWGAK 161
EG ++ ++ + W T I++ +N++ ++ LL +G K
Sbjct: 120 EGVLQVNKNKSTYYEKEYWKYKNLTFIIMGINIVTFLLTALLSGNIFNIDYWVLLKYGGK 179
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+N LI++GQ+WRL T AFLH + H++ N YSL +GP +++I G +Y +Y S + S
Sbjct: 180 VNELINQGQYWRLLTCAFLHGGLIHIVGNMYSLYILGPEIQQIYGVYKYFIIYIFSCLTS 239
Query: 222 SAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAA 281
S +SY +VGASG IFGL+G+ VF + R + K L L + + N+ +
Sbjct: 240 SLLSYFMSPYLSVGASGGIFGLMGALVVFAIIERKRI--NKRYLSSLLQAMGVNLFIGFS 297
Query: 282 FANI 285
+NI
Sbjct: 298 ISNI 301
>gi|397612848|gb|EJK61912.1| hypothetical protein THAOC_17510, partial [Thalassiosira oceanica]
Length = 434
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 137 LLAVNVLVYIAQFATQDKLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVNCYSLN 195
+ VN+ VY Q +L WGAK + L+ +G Q RL T FLH I HL+ N YSL
Sbjct: 222 IFLVNIAVYGLQ-TLMPQLTAWGAKRSDLLLEGRQLHRLITPVFLHGGIGHLVANSYSLK 280
Query: 196 SIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHR 255
S+G +E GP R L Y S +A + S +PAVGASGAIFGLVG++ F+ R+
Sbjct: 281 SMGNNVEGAFGPARTLATYLVSGVAGNIFSAVNSPNPAVGASGAIFGLVGAYYTFLARNS 340
Query: 256 NILG-GGKEELQHLAKVIIFNMV 277
I G G+ + L + I N+V
Sbjct: 341 EIFGHSGRAQKGALLETIGINLV 363
>gi|422293068|gb|EKU20369.1| hypothetical protein NGA_2130210, partial [Nannochloropsis gaditana
CCMP526]
Length = 249
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 95/155 (61%), Gaps = 4/155 (2%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
WTN LLA+NV ++IAQ + L GAK + LI +G+ +RL T LH +I HLM N Y
Sbjct: 19 WTNRLLALNVAIFIAQ-QVDPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSY 77
Query: 193 SLNSIGPTMEKI-CGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVF 250
++ ++G +E + GP +YL +Y S +A +A+S+ +P ++GAS A+ GL+G+ +F
Sbjct: 78 TMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLF 137
Query: 251 IMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
RHR++ + L+ +A+ ++ N V + A I
Sbjct: 138 CYRHRHVW-NLEGPLRSVAQAVVINGVLGMSSARI 171
>gi|422294933|gb|EKU22233.1| hypothetical protein NGA_2130220, partial [Nannochloropsis gaditana
CCMP526]
Length = 249
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 95/155 (61%), Gaps = 4/155 (2%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
WTN LLA+NV ++IAQ + L GAK + LI +G+ +RL T LH +I HLM N Y
Sbjct: 19 WTNRLLALNVAIFIAQ-QVDPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSY 77
Query: 193 SLNSIGPTMEKI-CGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVF 250
++ ++G +E + GP +YL +Y S +A +A+S+ +P ++GAS A+ GL+G+ +F
Sbjct: 78 TMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLF 137
Query: 251 IMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
RHR++ + L+ +A+ ++ N V + A I
Sbjct: 138 CYRHRHVW-NLEGPLRSVAQAVVINGVLGMSSARI 171
>gi|397576168|gb|EJK50102.1| hypothetical protein THAOC_30966 [Thalassiosira oceanica]
Length = 527
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 137 LLAVNVLVYIAQFATQDKLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVNCYSLN 195
+ VN+ VY Q +L WGAK + L+ +G Q RL T FLH I HL+ N YSL
Sbjct: 211 IFLVNIAVYGLQ-TLMPQLTAWGAKRSDLLLEGRQLHRLITPVFLHGGIGHLVSNSYSLK 269
Query: 196 SIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHR 255
S+G +E GP R L Y S +A + S +PAVGASGAIFGLVG++ F+ R+
Sbjct: 270 SMGNNVEGAFGPARTLATYLVSGVAGNIFSAVNSPNPAVGASGAIFGLVGAYYTFLARNS 329
Query: 256 NILG-GGKEELQHLAKVIIFNMV 277
I G G+ + L + I N+V
Sbjct: 330 EIFGHSGRAQKGALLETIGINLV 352
>gi|410657229|ref|YP_006909600.1| GlpG protein (membrane protein of glp regulon) [Dehalobacter sp.
DCA]
gi|410660265|ref|YP_006912636.1| Rhomboid-like protein [Dehalobacter sp. CF]
gi|409019584|gb|AFV01615.1| GlpG protein (membrane protein of glp regulon) [Dehalobacter sp.
DCA]
gi|409022621|gb|AFV04651.1| Rhomboid-like protein [Dehalobacter sp. CF]
Length = 203
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 92/157 (58%), Gaps = 7/157 (4%)
Query: 134 TNILLAVNVLVYIAQ---FATQDK--LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +L+ +NV+V++ TQ+ L+ +GAK+N+LID GQ+WRL TS F+H HL+
Sbjct: 19 TYLLVLINVVVFLVMELAGGTQNPYVLIFFGAKMNTLIDAGQYWRLLTSMFIHIGFTHLL 78
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N Y+L +G E++ G R+L +Y S +A S +SY + + GASGAIFGL+G+
Sbjct: 79 FNVYALIVLGKLAERLFGHGRFLLIYLFSGLAGSLISYLWGPELSAGASGAIFGLLGAII 138
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
++ R G + +LA V+ N+V F+ I
Sbjct: 139 IYGCRKPAFWRTGL--ITNLAIVLGINLVFGVVFSGI 173
>gi|28210270|ref|NP_781214.1| rhomboid family membrane protein [Clostridium tetani E88]
gi|28202706|gb|AAO35151.1| conserved membrane protein (rhomboid family) [Clostridium tetani
E88]
Length = 345
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 101/160 (63%), Gaps = 10/160 (6%)
Query: 134 TNILLAVNVLVYIAQF--------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+++N+++Y + D L+ GAK+N LID GQ++RL T FLH +
Sbjct: 167 TFILISMNIIMYFITALLSGNIIDSNIDVLIFLGAKVNPLIDIGQYYRLLTCIFLHGGLI 226
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
HL +N Y+L++IGP +EKI G +YL +YF S I SS +SY +S ++GASGAIFGL+G
Sbjct: 227 HLALNMYALSAIGPLVEKIYGKFKYLAIYFLSGICSSLLSYFMSSSISIGASGAIFGLLG 286
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
+ + +++++ + GK + ++ VI N++ + +N+
Sbjct: 287 ACLIISLKYKDRV--GKAFVNNIISVIFVNLIIGFSISNV 324
>gi|325289903|ref|YP_004266084.1| rhomboid family protein [Syntrophobotulus glycolicus DSM 8271]
gi|324965304|gb|ADY56083.1| Rhomboid family protein [Syntrophobotulus glycolicus DSM 8271]
Length = 189
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 73/120 (60%), Gaps = 5/120 (4%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN L +N+LV++ Q L+++GAK+N LID GQ+WRL TS F+H I HL+
Sbjct: 12 TNTFLIMNILVFLVMTLAGGTTNQVVLVIFGAKVNQLIDLGQYWRLLTSIFIHIGIVHLL 71
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
+N Y+L ++G E + G ++ +Y S I + SY F + + GASGAIFGL+G+
Sbjct: 72 LNSYALIAVGQISEAVFGHLKFALLYLLSGIGGATASYLFSEAISAGASGAIFGLLGALV 131
>gi|331268929|ref|YP_004395421.1| rhomboid family membrane protein [Clostridium botulinum BKT015925]
gi|329125479|gb|AEB75424.1| rhomboid family membrane protein [Clostridium botulinum BKT015925]
Length = 335
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 82/131 (62%), Gaps = 2/131 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ GAK N+LI GQ++RL T FLH + HL++N Y+L ++GP +EK G +Y+ +Y
Sbjct: 181 LIFLGAKENTLIASGQYYRLITCMFLHGGLMHLILNMYALKALGPMIEKSYGKMKYVIIY 240
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
+ SS SY F N ++GASGAIF L+G+ V ++ R++ GK+ ++++ VI+
Sbjct: 241 LVGGLISSISSYIFSNGVSIGASGAIFSLLGAILVLTIKMRSV--AGKDVIKNVVSVIVI 298
Query: 275 NMVCSAAFANI 285
N+ A NI
Sbjct: 299 NIFIGLAIPNI 309
>gi|15894241|ref|NP_347590.1| hypothetical protein CA_C0954 [Clostridium acetobutylicum ATCC 824]
gi|337736171|ref|YP_004635618.1| hypothetical protein SMB_G0971 [Clostridium acetobutylicum DSM
1731]
gi|384457680|ref|YP_005670100.1| hypothetical protein CEA_G0966 [Clostridium acetobutylicum EA 2018]
gi|15023857|gb|AAK78930.1|AE007610_10 Uncharacterized membrane protein [Clostridium acetobutylicum ATCC
824]
gi|325508369|gb|ADZ20005.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018]
gi|336291944|gb|AEI33078.1| hypothetical protein SMB_G0971 [Clostridium acetobutylicum DSM
1731]
Length = 328
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 91/161 (56%), Gaps = 11/161 (6%)
Query: 134 TNILLAVNVLVY-IAQF------ATQDKLL-LWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +N +VY I+ + A +++L GAK + LID GQ++RL T FLHA I
Sbjct: 144 TWILIVINFIVYGISAWLSGNPVAISNQVLNFMGAKNSVLIDNGQYYRLITCMFLHAGIT 203
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLV 244
H+ N YSL S+G +E I G RY +YF S I +S SY F S +VGASGAIFGL+
Sbjct: 204 HIGANMYSLYSMGYMLENIYGKLRYTAIYFISGITASFFSYIFSRESLSVGASGAIFGLL 263
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
G+ VF + R + GK ++ V N+ S NI
Sbjct: 264 GAAIVFGFKLRKRI--GKAFFANMVGVFALNIFISFTIPNI 302
>gi|168210042|ref|ZP_02635667.1| rhomboid family protein [Clostridium perfringens B str. ATCC 3626]
gi|170711841|gb|EDT24023.1| rhomboid family protein [Clostridium perfringens B str. ATCC 3626]
Length = 342
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 83/134 (61%), Gaps = 4/134 (2%)
Query: 154 KLLLW-GAK-INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
++L W GAK N++I G+++RL TS FLH I HL+ N Y+L +G +E+I G ++YL
Sbjct: 184 QILYWMGAKHNNAIIFHGEYYRLVTSMFLHGGIVHLLFNMYALYILGDFIERIYGAKKYL 243
Query: 212 GVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+YF S I +S S F VGASGAIFGL+G+ VF ++ + GK + ++ +
Sbjct: 244 AIYFVSGIVASIFSLYFSPVMGVGASGAIFGLLGAALVFAYNEKDRI--GKALVTNIIVI 301
Query: 272 IIFNMVCSAAFANI 285
I+ N+ S + +NI
Sbjct: 302 ILLNVFISLSMSNI 315
>gi|223994881|ref|XP_002287124.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976240|gb|EED94567.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 866
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 86/153 (56%), Gaps = 5/153 (3%)
Query: 130 GRQWTNILLAVNVLVYIAQFATQ---DKLLLWGAKINSLIDKG-QFWRLATSAFLHANIA 185
G+ N L L+ IA F Q L WGAK + L+ +G Q RL T FLH I
Sbjct: 527 GQIGKNTLTGNIFLLNIAVFGMQTLYPALTGWGAKRSDLLLEGRQLHRLITPIFLHGGIG 586
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
HLM N YSL S+G +E+ G R++ Y S I + +S +PAVGASGAIFGLVG
Sbjct: 587 HLMANSYSLKSMGMNIERSFGRSRFVATYLLSGIMGNVVSAIQSPNPAVGASGAIFGLVG 646
Query: 246 SFAVFIMRHRNILG-GGKEELQHLAKVIIFNMV 277
++ F+ R++++ G G+ + L + I FN++
Sbjct: 647 AYYTFLSRNQDLFGYSGQRQKSALIETIGFNLL 679
>gi|89894371|ref|YP_517858.1| hypothetical protein DSY1625 [Desulfitobacterium hafniense Y51]
gi|219668797|ref|YP_002459232.1| rhomboid family protein [Desulfitobacterium hafniense DCB-2]
gi|423073963|ref|ZP_17062698.1| peptidase, S54 family [Desulfitobacterium hafniense DP7]
gi|89333819|dbj|BAE83414.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219539057|gb|ACL20796.1| Rhomboid family protein [Desulfitobacterium hafniense DCB-2]
gi|361855174|gb|EHL07168.1| peptidase, S54 family [Desulfitobacterium hafniense DP7]
Length = 327
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 91/148 (61%), Gaps = 7/148 (4%)
Query: 134 TNILLAVNVLVY----IAQFATQDK-LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+A+N++V+ +A +T+ L+L+GAK+N+LI +G++WRL TS FLH HL
Sbjct: 151 TYTLIAINLIVFGLMTLAGGSTRTGVLILFGAKVNALIIQGEYWRLFTSMFLHIGFLHLA 210
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N Y+L ++G E++ G RY+ VY S I S S+ F ++ + GASGAIFG++G+
Sbjct: 211 FNLYALWALGAIAEELLGRVRYITVYILSGILGSVASFFFTDAISAGASGAIFGILGALV 270
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNM 276
V+ R + G + LA V++ N+
Sbjct: 271 VYSRRKPFLWKSGFG--KSLAVVVLINL 296
>gi|253682458|ref|ZP_04863255.1| putative rhomboid protease GluP [Clostridium botulinum D str. 1873]
gi|253562170|gb|EES91622.1| putative rhomboid protease GluP [Clostridium botulinum D str. 1873]
Length = 200
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 83/131 (63%), Gaps = 2/131 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ GA N+L+ GQ++RL T FLH + HL++N Y+LN++GP +EK G +Y+ +Y
Sbjct: 46 LIFLGANENTLVASGQYYRLITCMFLHGGLMHLILNMYALNALGPIIEKSYGKNKYIIIY 105
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
+ SS S+ F N ++GASGAIF L+G+ V ++ R+++ GK+ ++++ VI+
Sbjct: 106 LLGGLISSISSFIFSNGVSIGASGAIFSLLGAILVLTIKMRSVV--GKDTIKNVISVIVV 163
Query: 275 NMVCSAAFANI 285
N+ A NI
Sbjct: 164 NIFIGLAIPNI 174
>gi|416361193|ref|ZP_11682501.1| rhomboid family membrane protein [Clostridium botulinum C str.
Stockholm]
gi|338194390|gb|EGO86853.1| rhomboid family membrane protein [Clostridium botulinum C str.
Stockholm]
Length = 200
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 83/131 (63%), Gaps = 2/131 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ GA N+L+ GQ++RL T FLH + HL++N Y+LN++GP +EK G +Y+ +Y
Sbjct: 46 LIFLGANENTLVASGQYYRLITCMFLHGGLMHLILNMYALNALGPIIEKSYGKNKYIIIY 105
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
+ SS S+ F N ++GASGAIF L+G+ V ++ R+++ GK+ ++++ VI+
Sbjct: 106 LLGGLISSISSFIFSNGVSIGASGAIFSLLGAILVLTIKMRSVV--GKDTIKNVISVIVV 163
Query: 275 NMVCSAAFANI 285
N+ A NI
Sbjct: 164 NIFIGLAIPNI 174
>gi|451820893|ref|YP_007457094.1| rhomboid protease GluP [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451786872|gb|AGF57840.1| rhomboid protease GluP [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 512
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 76/121 (62%), Gaps = 8/121 (6%)
Query: 134 TNILLAVNVLVYI-------AQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+A+N+ +++ +KLL +G+K N+ I +GQ+WR T FLHANI
Sbjct: 185 TYILIALNLFIFVIMGIYSWETGIDYNKLLFEFGSKENTSIIQGQYWRFITPMFLHANIM 244
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
H+ +NCY+L IG E+I G +++ +YF + I + S+ F ++P VGASGAIFGL G
Sbjct: 245 HVALNCYTLYLIGKLSERIFGKAKFITIYFIAGILGNIFSFAFNSNPGVGASGAIFGLFG 304
Query: 246 S 246
+
Sbjct: 305 A 305
>gi|422874373|ref|ZP_16920858.1| rhomboid family protein [Clostridium perfringens F262]
gi|380304681|gb|EIA16968.1| rhomboid family protein [Clostridium perfringens F262]
Length = 342
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 93/169 (55%), Gaps = 19/169 (11%)
Query: 134 TNILLAVNVLVYIAQFATQD---------------KLLLW-GAK-INSLIDKGQFWRLAT 176
T IL+ +N+L ++ + ++L W GAK N++I G+++RL T
Sbjct: 149 TGILIGLNILAFLVCLIVANALGAGFFRNIVEMNPQILYWMGAKHNNAIIFHGEYYRLVT 208
Query: 177 SAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGA 236
S FLH I HL+ N Y+L +G +E+I G ++YL +YF S I +S S F VGA
Sbjct: 209 SMFLHGGIVHLLFNMYALYILGDFIERIYGAKKYLAIYFVSGIVASIFSLYFSPVMGVGA 268
Query: 237 SGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
SGAIFGL+G+ VF ++ + GK + ++ +I+ N+ + +NI
Sbjct: 269 SGAIFGLLGAALVFAYNEKDRI--GKALVTNIIVIILLNVFIGLSMSNI 315
>gi|219121723|ref|XP_002181210.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407196|gb|EEC47133.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 342
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 88/155 (56%), Gaps = 4/155 (2%)
Query: 129 IGR-QWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQ-FWRLATSAFLHANIAH 186
IGR W++ ++ N+ + AQ A + WG K++ I +G+ +RL T FLH H
Sbjct: 83 IGRLSWSSRIIWTNIATFAAQ-AWKPSFTQWGIKVSEKILRGEELYRLITPVFLHGGFGH 141
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
+ N SL+ +GP +E++ G R+L Y S + + +S +P +GASGA+FG+VG+
Sbjct: 142 IFTNMISLSRVGPDVERLFGSGRFLTTYMVSGMTGNLLSAYMSPNPGLGASGAVFGVVGA 201
Query: 247 FAVFIMRHRNILG-GGKEELQHLAKVIIFNMVCSA 280
+ VF+ R+ +LG G+ + + ++FN+ A
Sbjct: 202 YYVFLTRNEWLLGPAGQSVTSSITQTMLFNIFLGA 236
>gi|300853810|ref|YP_003778794.1| membrane-associated protein [Clostridium ljungdahlii DSM 13528]
gi|300433925|gb|ADK13692.1| putative membrane-associated protein [Clostridium ljungdahlii DSM
13528]
Length = 337
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 100/158 (63%), Gaps = 10/158 (6%)
Query: 136 ILLAVNVLVYIAQ-------FATQDKLLLW-GAKINSLIDKGQFWRLATSAFLHANIAHL 187
I++A+NV VY F + +L++ GAK+NSLI G+++RL T FLHA I HL
Sbjct: 155 IIIALNVAVYTVTAYLSGNIFDSNINVLVFMGAKVNSLIASGEYYRLFTCMFLHAGIVHL 214
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
VN YSL +G +EK+ G +Y+ +Y S + SS S+ F +S +VGASGAIFGL+G+
Sbjct: 215 GVNMYSLYIMGSFVEKVYGKVKYIVMYLISGLVSSVFSFMFSSSISVGASGAIFGLLGAA 274
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
VF ++ ++ + GKE L ++ +I+ N++ + AN+
Sbjct: 275 LVFAIKMKHKI--GKEFLMNVISIIVVNLIIGFSIANV 310
>gi|110803398|ref|YP_698757.1| rhomboid family protein [Clostridium perfringens SM101]
gi|110683899|gb|ABG87269.1| rhomboid family protein [Clostridium perfringens SM101]
Length = 342
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 83/134 (61%), Gaps = 4/134 (2%)
Query: 154 KLLLW-GAK-INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
K+L W GAK N++I G+++RL TS FLH+ I HL+ N Y+L +G +E+I G ++YL
Sbjct: 184 KILYWMGAKHNNAIIFHGEYYRLVTSMFLHSGIVHLLFNMYALYILGDFIERIYGAKKYL 243
Query: 212 GVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+YF S I +S S F VGASGAIFGL+G+ VF ++ + GK + ++ +
Sbjct: 244 VIYFVSGIVASIFSLYFSPVMGVGASGAIFGLLGAALVFAYNEKDRI--GKALVTNIIVI 301
Query: 272 IIFNMVCSAAFANI 285
I+ N+ + +NI
Sbjct: 302 ILLNVFIGLSMSNI 315
>gi|168214465|ref|ZP_02640090.1| rhomboid family protein [Clostridium perfringens CPE str. F4969]
gi|168216839|ref|ZP_02642464.1| rhomboid family protein [Clostridium perfringens NCTC 8239]
gi|422346116|ref|ZP_16427030.1| hypothetical protein HMPREF9476_01103 [Clostridium perfringens
WAL-14572]
gi|170714094|gb|EDT26276.1| rhomboid family protein [Clostridium perfringens CPE str. F4969]
gi|182381088|gb|EDT78567.1| rhomboid family protein [Clostridium perfringens NCTC 8239]
gi|373226738|gb|EHP49060.1| hypothetical protein HMPREF9476_01103 [Clostridium perfringens
WAL-14572]
Length = 342
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 82/134 (61%), Gaps = 4/134 (2%)
Query: 154 KLLLW-GAK-INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
++L W GAK N++I G+++RL TS FLH I HL+ N Y+L +G +E+I G ++YL
Sbjct: 184 QILYWMGAKHNNAIIFHGEYYRLVTSMFLHGGIVHLLFNMYALYILGDFIERIYGAKKYL 243
Query: 212 GVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+YF S I +S S F VGASGAIFGL+G+ VF ++ + GK + ++ +
Sbjct: 244 AIYFVSGIVASIFSLYFSPVMGVGASGAIFGLLGAALVFAYNEKDRI--GKALVTNIIVI 301
Query: 272 IIFNMVCSAAFANI 285
I+ N+ + +NI
Sbjct: 302 ILLNVFIGLSMSNI 315
>gi|320162418|ref|YP_004175643.1| rhomboid family protein [Anaerolinea thermophila UNI-1]
gi|319996272|dbj|BAJ65043.1| rhomboid family protein [Anaerolinea thermophila UNI-1]
Length = 258
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 81/140 (57%), Gaps = 7/140 (5%)
Query: 134 TNILLAVNVLVYIAQFATQ-----DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T ILL V V VY+ Q ++ D LL GAK N+LI +G+FWRL T FLH ++ H+
Sbjct: 39 TYILLGVTVGVYLLQMLSRPLFGYDLLLAMGAKSNTLIQQGEFWRLITPMFLHVSLPHIA 98
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N Y+L + G ++E+ G RR+L +YF + +SY + GAS A+FG+V + A
Sbjct: 99 FNMYALYAFGVSLERHYGRRRFLLLYFIGGLGGVVLSYLLSPENSAGASTALFGVVAAEA 158
Query: 249 VFIMRHRNILGGGKEELQHL 268
VF+ +R GKE + L
Sbjct: 159 VFLYYNRRWF--GKEAVSAL 176
>gi|110799144|ref|YP_696141.1| rhomboid family protein [Clostridium perfringens ATCC 13124]
gi|168206356|ref|ZP_02632361.1| rhomboid family protein [Clostridium perfringens E str. JGS1987]
gi|169347261|ref|ZP_02866200.1| rhomboid family protein [Clostridium perfringens C str. JGS1495]
gi|110673791|gb|ABG82778.1| rhomboid family protein [Clostridium perfringens ATCC 13124]
gi|169296657|gb|EDS78788.1| rhomboid family protein [Clostridium perfringens C str. JGS1495]
gi|170662212|gb|EDT14895.1| rhomboid family protein [Clostridium perfringens E str. JGS1987]
Length = 342
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 82/134 (61%), Gaps = 4/134 (2%)
Query: 154 KLLLW-GAK-INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
++L W GAK N++I G+++RL TS FLH I HL+ N Y+L +G +E+I G ++YL
Sbjct: 184 QILYWMGAKHNNAIIFHGEYYRLVTSMFLHGGIVHLLFNMYALYILGDFIERIYGAKKYL 243
Query: 212 GVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+YF S I +S S F VGASGAIFGL+G+ VF ++ + GK + ++ +
Sbjct: 244 AIYFVSGIVASIFSLYFSPVMGVGASGAIFGLLGAALVFAYNEKDRI--GKALVTNIIVI 301
Query: 272 IIFNMVCSAAFANI 285
I+ N+ + +NI
Sbjct: 302 ILLNVFIGLSMSNI 315
>gi|18310434|ref|NP_562368.1| rhomboid family protein [Clostridium perfringens str. 13]
gi|18145114|dbj|BAB81158.1| conserved hypothetical protein [Clostridium perfringens str. 13]
Length = 342
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 82/134 (61%), Gaps = 4/134 (2%)
Query: 154 KLLLW-GAK-INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
++L W GAK N++I G+++RL TS FLH I HL+ N Y+L +G +E+I G ++YL
Sbjct: 184 QILYWMGAKHNNAIIFHGEYYRLVTSMFLHGGIVHLLFNMYALYILGDFIERIYGAKKYL 243
Query: 212 GVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+YF S I +S S F VGASGAIFGL+G+ VF ++ + GK + ++ +
Sbjct: 244 AIYFVSGIVASIFSLYFSPVMGVGASGAIFGLLGAALVFAYNEKDRI--GKALVTNIIVI 301
Query: 272 IIFNMVCSAAFANI 285
I+ N+ + +NI
Sbjct: 302 ILLNVFIGLSMSNI 315
>gi|402572950|ref|YP_006622293.1| hypothetical protein Desmer_2505 [Desulfosporosinus meridiei DSM
13257]
gi|402254147|gb|AFQ44422.1| putative membrane protein [Desulfosporosinus meridiei DSM 13257]
Length = 314
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 81/147 (55%), Gaps = 7/147 (4%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +L +N++V+I Q L+ +GAK+N LI G+ WR TS F+H HL+
Sbjct: 135 TYVLFGINIVVFILMTLAGGSENQSVLIAFGAKVNPLIQAGELWRFLTSVFIHIGFLHLL 194
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N Y+L S+GP E+ G R+L +Y S + S SY F + + GASGAIFGL+G+
Sbjct: 195 FNLYALWSLGPISERNFGHWRFLVIYIMSGLGGSIASYFFSTALSAGASGAIFGLLGALL 254
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFN 275
+ ++ ++ G +L VII N
Sbjct: 255 YYSLKRPSLWKSGLG--MNLVIVIIIN 279
>gi|399889571|ref|ZP_10775448.1| hypothetical protein CarbS_13682 [Clostridium arbusti SL206]
Length = 323
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 92/157 (58%), Gaps = 10/157 (6%)
Query: 137 LLAVNVLVYI------AQFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
++A+N++VY+ + F D +L GAK N+LI+ G+++RL T FLH+ I H+
Sbjct: 142 IIAINIVVYVISAILSSNFFDIDIRVLDFLGAKDNTLINSGEYYRLFTCMFLHSGIVHIA 201
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N YSL SIG +E I G ++Y+ +Y S + +S SY F + +VGASGAIFG++G
Sbjct: 202 SNMYSLYSIGGLVESIFGRKKYIIMYLLSGLIASLFSYVFSSGISVGASGAIFGVLG--G 259
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
V ++ H+ GK +++ VI N+ S NI
Sbjct: 260 VLVISHKLKHRIGKGLFRNIIFVIAINLFISFTIPNI 296
>gi|357128747|ref|XP_003566031.1| PREDICTED: rhomboid protease gluP-like [Brachypodium distachyon]
Length = 214
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 71/114 (62%), Gaps = 6/114 (5%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
N+LI KGQ WRLATS+ LH + HL VN YSL+ +GP +E+ GPRR+L +Y +SA+A S
Sbjct: 45 NALIKKGQIWRLATSSLLHGGLFHLAVNAYSLHVVGPEVEEATGPRRFLAIYCTSALAGS 104
Query: 223 AMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNM 276
MSY F G + VG+ AV++ R++ L +E L+ + ++ N+
Sbjct: 105 LMSYWF------GMFNLLLDRVGAQAVYVWRNQKYLENAEETLKDIRYDVLINL 152
>gi|452991452|emb|CCQ97320.1| putative Rhomboid protease [Clostridium ultunense Esp]
Length = 400
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 80/131 (61%), Gaps = 5/131 (3%)
Query: 133 WTNILLAVNVLVYI-----AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
WT +L+A+N+LV++ + L+ +GAK N I G++WRL TS FLH+ H+
Sbjct: 194 WTYVLVAINLLVFLWLTVNGGSQNPETLIRFGAKYNPAIKAGEWWRLITSIFLHSGFFHV 253
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
+N +L +G +E++ G R+L +YF + + S S+ + ++ +VG+SGAI+GL G+
Sbjct: 254 ALNSIALYYLGLLVERMYGRARFLLIYFMAGLLGSVASFLYSDTVSVGSSGAIYGLFGAL 313
Query: 248 AVFIMRHRNIL 258
F MR R++
Sbjct: 314 LFFGMRRRDLF 324
>gi|229916284|ref|YP_002884930.1| rhomboid family protein [Exiguobacterium sp. AT1b]
gi|229467713|gb|ACQ69485.1| Rhomboid family protein [Exiguobacterium sp. AT1b]
Length = 350
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 71/105 (67%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK+N LI++G++WRL T FLH H +N ++L S+GP +E++ G R+L
Sbjct: 169 NTLVAFGAKVNPLIEQGEWWRLITPMFLHIGWFHFAINMFALWSLGPLVERMYGSIRFLI 228
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
+Y S I +++ S+ F S + GASGA+FGLVG+ F +R R++
Sbjct: 229 IYLLSGILATSASFAFSESISAGASGALFGLVGALLYFGLRDRSL 273
>gi|118442959|ref|YP_877647.1| rhomboid family membrane protein [Clostridium novyi NT]
gi|118133415|gb|ABK60459.1| conserved membrane protein (rhomboid family) [Clostridium novyi NT]
Length = 202
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 66/107 (61%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
LL GA N+L+ G+++RL T FLH + HL+ N Y+L +IGP +E+I G +Y+ +Y
Sbjct: 53 LLFLGANENTLVSNGEYYRLFTCMFLHGGLIHLLANMYALGAIGPIVERIYGKVKYIIIY 112
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGG 261
I SS S+ F ++GASGAIF L+G + + ++I+G G
Sbjct: 113 LVGGIISSIASHFFLRGVSIGASGAIFALLGVMLIITIERKDIVGNG 159
>gi|295397321|ref|ZP_06807413.1| rhomboid family protein [Aerococcus viridans ATCC 11563]
gi|294974395|gb|EFG50130.1| rhomboid family protein [Aerococcus viridans ATCC 11563]
Length = 223
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 89/158 (56%), Gaps = 14/158 (8%)
Query: 134 TNILLAVNVLVYIA-QFATQDK----LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T LL + ++++I +F + LLL+GAK N LI G++WRL T FLH I HL+
Sbjct: 9 TYTLLGIQIILFIMMEFMGSSESSATLLLFGAKFNPLIAAGEYWRLITPMFLHIGIVHLL 68
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
+N +L +G +E I G RYL +Y +S + + SY+F + + GAS A+FGL FA
Sbjct: 69 INSITLYYLGSMVENIAGHWRYLVIYLASGLMGNLFSYQFSENISAGASTALFGL---FA 125
Query: 249 VFIM------RHRNILGGGKEELQHLAKVIIFNMVCSA 280
VF+ R+R+I G + L + ++F M+ S
Sbjct: 126 VFLALKNLFPRNRHIQSIGSQYLTLVGINLVFGMMGSG 163
>gi|403387738|ref|ZP_10929795.1| membrane associated peptidase [Clostridium sp. JC122]
Length = 216
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 82/136 (60%), Gaps = 7/136 (5%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
+++ G +N L+ G+++RL T+ FLHA++ HL +N +LN+IG +EK+ G +++ VY
Sbjct: 53 IIVLGGMVNLLVKNGEYYRLFTAGFLHASVLHLTLNMIALNAIGSIVEKVLGKGKFIIVY 112
Query: 215 FSSAIASSAMSYRFCNSP-----AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLA 269
S I +S SY N +VGASGAIFGL+GS + + ++ + GK L+ +
Sbjct: 113 ILSLIFASYGSYVVANVKLGIGISVGASGAIFGLLGSLLIIVFLNKKVF--GKTVLRGIT 170
Query: 270 KVIIFNMVCSAAFANI 285
+VI+ N++ NI
Sbjct: 171 EVIVVNLLIGFFVPNI 186
>gi|302872967|ref|YP_003841600.1| rhomboid family protein [Clostridium cellulovorans 743B]
gi|307686518|ref|ZP_07628964.1| Rhomboid family protein [Clostridium cellulovorans 743B]
gi|302575824|gb|ADL49836.1| Rhomboid family protein [Clostridium cellulovorans 743B]
Length = 326
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 96/162 (59%), Gaps = 10/162 (6%)
Query: 124 RTNLFIGRQWTNILLAVNVLVYI-AQFATQDK-------LLLWGAKINSLIDKGQFWRLA 175
+ NLF Q T+I++ +N+++++ + + D L+ GAK+NS I G+F+RL
Sbjct: 130 KNNLFSSNQITSIIIFLNIVIFLYSSYINGDIFDINTLILVQLGAKVNSYIINGEFYRLL 189
Query: 176 TSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVG 235
T FLH+ + H+ N Y+LN+IG +E++ G ++++ +Y + ++ S S+ F +VG
Sbjct: 190 TCTFLHSGLMHIAFNMYALNNIGRLIERVYGWKKFILIYIFAGLSGSLASFLFSPYVSVG 249
Query: 236 ASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMV 277
ASGAIFGL G+ + ++ + + L LA VI+ N++
Sbjct: 250 ASGAIFGLFGAALIMGLKLKKYI--NSNFLGSLASVIVVNVI 289
>gi|23099378|ref|NP_692844.1| hypothetical protein OB1923 [Oceanobacillus iheyensis HTE831]
gi|22777607|dbj|BAC13879.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 518
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 77/131 (58%), Gaps = 5/131 (3%)
Query: 133 WTNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T IL+A+N+ ++ Q D L+ GAK N LI +G++WRL TS FLH H+
Sbjct: 187 FTYILIALNLFFFLQQINNGGSENIDTLIQMGAKYNPLIMEGEWWRLLTSMFLHIGFVHI 246
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
++N +L +G +E+I G R+L +YF IA S S+ S + GASGAIFGL G+
Sbjct: 247 LMNMVALFYLGTAVERIFGRTRFLVIYFLGGIAGSIASFATSISISAGASGAIFGLFGAL 306
Query: 248 AVFIMRHRNIL 258
F + ++++
Sbjct: 307 LFFGLIYKDVF 317
>gi|374297549|ref|YP_005047740.1| hypothetical protein [Clostridium clariflavum DSM 19732]
gi|359827043|gb|AEV69816.1| putative membrane protein [Clostridium clariflavum DSM 19732]
Length = 517
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 79/146 (54%), Gaps = 7/146 (4%)
Query: 109 RKNSGHEGTSHLDTARTNLFI--GRQWTNIL--LAVNVLVYIAQFATQDKLLLWGAKINS 164
K S H +D FI G N+L L +N+ + Q + +GAK NS
Sbjct: 169 EKESNHPSARFIDKVP---FITYGLIIINVLMWLVMNIYALVKGTNVQSLFIPFGAKENS 225
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
LI G++WR T FLHA++ HL++NC SL G +E + G ++++ +YF + I S
Sbjct: 226 LIFAGEYWRFLTPIFLHADLEHLIMNCLSLFVFGRIVEGMYGHKKFVFIYFMAGIMGSIA 285
Query: 225 SYRFCNSPAVGASGAIFGLVGSFAVF 250
S+ F AVGASGAIFGL+G+ F
Sbjct: 286 SFMFSPHSAVGASGAIFGLMGALLYF 311
>gi|126651489|ref|ZP_01723693.1| hypothetical protein BB14905_07394 [Bacillus sp. B14905]
gi|126591742|gb|EAZ85838.1| hypothetical protein BB14905_07394 [Bacillus sp. B14905]
Length = 207
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 73/123 (59%), Gaps = 4/123 (3%)
Query: 137 LLAVNVLVYIAQFATQDKLLLW--GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
L+A+N+++Y+ LLW G + N L+ KG++WR+ ++ FLHA H+ N +SL
Sbjct: 21 LIAINLILYVLSLLPGVGTLLWNYGIQANFLVQKGEWWRVFSAIFLHAGFMHVFFNMFSL 80
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS--PAVGASGAIFGLVGSFAVFIM 252
GP +EKI G R++ +Y S I + +Y F +S ++GASGAIFG+ G+F +
Sbjct: 81 YLFGPELEKIAGKARFITIYLVSGIVGNMATYIFYDSSYASLGASGAIFGIFGAFGALVY 140
Query: 253 RHR 255
R
Sbjct: 141 YTR 143
>gi|404425001|ref|ZP_11006516.1| rhomboid family protein [Mycobacterium fortuitum subsp. fortuitum
DSM 46621]
gi|403649659|gb|EJZ05001.1| rhomboid family protein [Mycobacterium fortuitum subsp. fortuitum
DSM 46621]
Length = 240
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 89/151 (58%), Gaps = 16/151 (10%)
Query: 137 LLAVNVLVYIAQFATQDKLL----LWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L+AVNVL+++ Q A+ D+L LW I + D Q++RL TSAFLH + HL+ N +
Sbjct: 33 LIAVNVLMFVLQMASGDRLTEELTLWAPGI-AFYD--QYYRLVTSAFLHYGVMHLLFNMW 89
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFAVF 250
+L +GP +E+ G RY +Y SA+ S + Y N+P GASGAIFGL G+ V
Sbjct: 90 ALYVVGPPLEQWLGRLRYGALYALSALGGSVLVYLLTPINTPTAGASGAIFGLFGAIFV- 148
Query: 251 IMRHRNILGGGKEELQHLAKVIIFNMVCSAA 281
+ R N+ +++ +A V+I N+V + A
Sbjct: 149 VARKLNL------DVRMIAAVVIINLVFTFA 173
>gi|298706212|emb|CBJ29253.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 269
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 90/158 (56%), Gaps = 9/158 (5%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
TN+LLA+N +VY+ Q ++ +GQ++RL T LH + HL VN S
Sbjct: 60 TNVLLALNAIVYLFQMRYPAITKAGWKMAPAITQQGQWYRLLTPIVLHGSFTHLAVNSMS 119
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC----NSPAVGASGAIFGLVGSFAV 249
+S+GP +E++ G +++ VY + IA + +S C +P+VGASGAIFG+VG++
Sbjct: 120 FSSVGPVVERVMGKAKFVTVYTLAGIAGNVLS---CIVNPRTPSVGASGAIFGMVGAWGA 176
Query: 250 FIMRHRNILG--GGKEELQHLAKVIIFNMVCSAAFANI 285
F + + +LG + L+++A+ ++ N+V + I
Sbjct: 177 FCLMNETVLGRNNSQRALRNVAQTVMINVVYGMGSSQI 214
>gi|354557489|ref|ZP_08976747.1| Peptidase S54, rhomboid domain protein [Desulfitobacterium
metallireducens DSM 15288]
gi|353550283|gb|EHC19720.1| Peptidase S54, rhomboid domain protein [Desulfitobacterium
metallireducens DSM 15288]
Length = 325
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 88/152 (57%), Gaps = 6/152 (3%)
Query: 115 EGTSHLDTARTNLFIGRQWTNILLAVNVLVY----IAQFATQDK-LLLWGAKINSLIDKG 169
E + + RTN F+ T IL A+N++V+ +A +T K L+L+GAK+N LI +G
Sbjct: 133 ERDKYFEFFRTNKFVPYV-TIILAAINIIVFSLMTLAGGSTNTKNLILFGAKVNELILQG 191
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC 229
Q WRL TS F+H HL N Y+L +G E+ G R+L +Y S +A S S+ F
Sbjct: 192 QVWRLFTSMFIHIGFLHLAFNIYALWILGSFSEERFGRWRFLFIYLLSGLAGSVTSFLFT 251
Query: 230 NSPAVGASGAIFGLVGSFAVFIMRHRNILGGG 261
++ + GASGAIFG++G+ + ++ + G
Sbjct: 252 DALSAGASGAIFGILGALVPYSWKNPRLWKSG 283
>gi|302758654|ref|XP_002962750.1| hypothetical protein SELMODRAFT_438082 [Selaginella moellendorffii]
gi|300169611|gb|EFJ36213.1| hypothetical protein SELMODRAFT_438082 [Selaginella moellendorffii]
Length = 1043
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 80/143 (55%), Gaps = 12/143 (8%)
Query: 133 WTNILLAVNVLVYIAQFATQDKL---------LLWGAKINSLIDKGQFWRLATSAFLHAN 183
+TN+++ VN V++ A+ + L GAKINSLI GQ+WRL T FLH
Sbjct: 639 FTNVIIGVNAAVFLFGLASPVQTPEMVEVPLPFLVGAKINSLIADGQWWRLVTPMFLHDG 698
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGL 243
+ H+ + ++L S GP +E + GP + +Y I + SY +P VG +G ++ L
Sbjct: 699 LIHIGLGAWALLSFGPGVESVYGPAGFCMIYLLGGIFGNITSYFLTPAPTVGGTGPLYAL 758
Query: 244 VGSFAVFIMRHRNILGGGKEELQ 266
V ++AV+I+++R G +E+Q
Sbjct: 759 VAAWAVYIVQNRQSFG---KEMQ 778
>gi|302758242|ref|XP_002962544.1| hypothetical protein SELMODRAFT_438240 [Selaginella moellendorffii]
gi|300169405|gb|EFJ36007.1| hypothetical protein SELMODRAFT_438240 [Selaginella moellendorffii]
Length = 1043
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 80/143 (55%), Gaps = 12/143 (8%)
Query: 133 WTNILLAVNVLVYIAQFATQDKL---------LLWGAKINSLIDKGQFWRLATSAFLHAN 183
+TN+++ VN V++ A+ + L GAKINSLI GQ+WRL T FLH
Sbjct: 639 FTNVIIGVNAAVFLFGLASPVQTPEMVEVPLPFLVGAKINSLIADGQWWRLVTPMFLHDG 698
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGL 243
+ H+ + ++L S GP +E + GP + +Y I + SY +P VG +G ++ L
Sbjct: 699 LIHIGLGAWALLSFGPGVESVYGPAGFCMIYLLGGIFGNITSYFLTPAPTVGGTGPLYAL 758
Query: 244 VGSFAVFIMRHRNILGGGKEELQ 266
V ++AV+I+++R G +E+Q
Sbjct: 759 VAAWAVYIIQNRQSFG---KEMQ 778
>gi|182627147|ref|ZP_02954861.1| rhomboid family protein [Clostridium perfringens D str. JGS1721]
gi|177907465|gb|EDT70134.1| rhomboid family protein [Clostridium perfringens D str. JGS1721]
Length = 342
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 81/143 (56%), Gaps = 17/143 (11%)
Query: 134 TNILLAVNVLVYI----------AQF-----ATQDKLLLW-GAK-INSLIDKGQFWRLAT 176
T IL+ +N+L ++ A F ++L W GAK N++I G+++RL T
Sbjct: 149 TGILIGLNILAFLVCLIVATALGAGFFRNIVEMNPQILYWMGAKHNNAIIFHGEYYRLVT 208
Query: 177 SAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGA 236
S FLH I HL+ N Y+L +G +E+I G ++YL +YF S I +S S F VGA
Sbjct: 209 SMFLHGGIVHLLFNMYALYILGDFIERIYGAKKYLAIYFVSGIVASIFSLYFSPVMGVGA 268
Query: 237 SGAIFGLVGSFAVFIMRHRNILG 259
SGAIFGL+G+ VF ++ +G
Sbjct: 269 SGAIFGLLGAALVFAYNEKDRIG 291
>gi|335041089|ref|ZP_08534206.1| Rhomboid family protein [Caldalkalibacillus thermarum TA2.A1]
gi|334179066|gb|EGL81714.1| Rhomboid family protein [Caldalkalibacillus thermarum TA2.A1]
Length = 577
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 12/165 (7%)
Query: 130 GRQWTNI-LLAVNVLVY-----IAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHAN 183
G+ + I L +NV ++ + L+ +GAK N LI +G++WRL T FLH
Sbjct: 202 GKPYLTISFLVINVFIFMFLEWVGSSTDPQTLITYGAKWNPLIIEGEYWRLVTPMFLHIG 261
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGL 243
I HLM N +L +G +E+I G R+L +Y + I+ + S+ F + A GASGAIFG
Sbjct: 262 IWHLMFNSLALYFLGGAVERIFGSFRFLWIYMFAGISGTLASFAFTPNLAAGASGAIFGC 321
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANIVKI 288
G+ F ++ RN+ + + IIF ++ + A I+ +
Sbjct: 322 FGALLYFGLKRRNLF------FRTIGMDIIFILIFNLAIGFIIPM 360
>gi|410725976|ref|ZP_11364264.1| putative membrane protein [Clostridium sp. Maddingley MBC34-26]
gi|410601611|gb|EKQ56119.1| putative membrane protein [Clostridium sp. Maddingley MBC34-26]
Length = 512
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 71/121 (58%), Gaps = 8/121 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDK--------LLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+A+N+L++ K LL +G+K N I +G++WR FLH NI
Sbjct: 185 TYILIALNLLIFALMGLYSWKSGTDYNTLLLEFGSKENEHILQGEYWRFIAPIFLHVNIV 244
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
H+ +NCYSL +G EKI G +++ +YF++ I + S+ F +P GASGAIFGL G
Sbjct: 245 HVALNCYSLYLVGILAEKIFGKGKFIAIYFAAGILGNIFSFAFNMNPGAGASGAIFGLFG 304
Query: 246 S 246
+
Sbjct: 305 A 305
>gi|312110225|ref|YP_003988541.1| Rhomboid protease [Geobacillus sp. Y4.1MC1]
gi|311215326|gb|ADP73930.1| Rhomboid protease [Geobacillus sp. Y4.1MC1]
Length = 389
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 85/158 (53%), Gaps = 11/158 (6%)
Query: 134 TNILLAVNVLVYIAQ-----FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T I +A+ V+V++ D L+ +GAK N LI G++WR T FLH HL+
Sbjct: 186 TYIFIALQVIVFLLMEWSGGSTNPDVLIKYGAKFNPLIQAGEWWRFFTPIFLHIGFLHLL 245
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
+N ++L +G T+E++ G R+ +YF++ + S+ F S + GASGAIFGL G+
Sbjct: 246 MNTFALYYLGMTVERLYGSWRFFFIYFTAGFFGTLGSFLFTASLSAGASGAIFGLFGALL 305
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANIV 286
F +R++ LQ + II +V + F IV
Sbjct: 306 YFGTVYRHLF------LQTIGTNIIGLIVINLVFGMIV 337
>gi|159900030|ref|YP_001546277.1| rhomboid family protein [Herpetosiphon aurantiacus DSM 785]
gi|159893069|gb|ABX06149.1| Rhomboid family protein [Herpetosiphon aurantiacus DSM 785]
Length = 286
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 78/133 (58%), Gaps = 4/133 (3%)
Query: 159 GAKINSLID-KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
GAK + L+D G++WRL T+ LH I H+ N Y+L ++GPT+E+ G R+ +Y +
Sbjct: 69 GAKWSPLMDIGGEWWRLFTATVLHGGIVHIGFNMYALYALGPTVERFYGSLRFSVIYLIA 128
Query: 218 AIASSAMSYRF--CNSPAVGASGAIFGLVGSFAVFIMRHRNILGG-GKEELQHLAKVIIF 274
I + SY F P++GASGAIFGL+G F + R++LG ++ L+ +
Sbjct: 129 GIGGAWASYSFGSLTGPSIGASGAIFGLIGCLIGFFLSARSVLGDFARQNLRQMVGTAAI 188
Query: 275 NMVCSAAFANIVK 287
N++ +F++++
Sbjct: 189 NLIIGLSFSSVID 201
>gi|456387124|gb|EMF52637.1| hypothetical protein SBD_5713 [Streptomyces bottropensis ATCC
25435]
Length = 297
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 88/164 (53%), Gaps = 21/164 (12%)
Query: 113 GHEGTSHLDTARTNLFIG--------RQWTNILLAVNVLVYIAQFAT----QDKLLL--- 157
G GT H +A + R T IL+ VN+L+++ Q A +D+ L
Sbjct: 56 GGSGTGHAPSASAPRTLAGGTVAADPRLLTKILIGVNLLLFLVQQAVGDTFEDRFDLIGR 115
Query: 158 -WGAKINSLID---KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGV 213
W ++ S + +GQ++RL TS FLH ++ H++ N SL IG +E G RYL +
Sbjct: 116 AWDPELGSSLQGVAEGQWYRLVTSMFLHGSVTHILFNMLSLWWIGGPLEAALGRARYLTL 175
Query: 214 YFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHR 255
YF S +A SA++Y N P++GASGAIFGL G+ V + R R
Sbjct: 176 YFVSGLAGSALTYLLAAPNQPSLGASGAIFGLFGATGVLMRRLR 219
>gi|321311972|ref|YP_004204259.1| membrane endopeptidase [Bacillus subtilis BSn5]
gi|320018246|gb|ADV93232.1| membrane endopeptidase [Bacillus subtilis BSn5]
Length = 507
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 66/105 (62%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI +G++WRL T LH IAHL N +L S+G +E++ G RR+L
Sbjct: 204 ETLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSRRFLL 263
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
+Y ++ I S S+ F P+ GASGAIFG +G+ + +R +
Sbjct: 264 IYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNRKM 308
>gi|299538296|ref|ZP_07051581.1| hypothetical protein BFZC1_19855 [Lysinibacillus fusiformis ZC1]
gi|424736343|ref|ZP_18164803.1| hypothetical protein C518_0957 [Lysinibacillus fusiformis ZB2]
gi|298726498|gb|EFI67088.1| hypothetical protein BFZC1_19855 [Lysinibacillus fusiformis ZC1]
gi|422949946|gb|EKU44319.1| hypothetical protein C518_0957 [Lysinibacillus fusiformis ZB2]
Length = 207
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 71/123 (57%), Gaps = 4/123 (3%)
Query: 137 LLAVNVLVYIAQFATQDKLLLW--GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
L+A+N+ +Y+ LLW G + N LI G++WR+ ++ FLHA H+ N +SL
Sbjct: 21 LIAINLTLYVLSLIPSIGTLLWNYGIQANFLIQSGEWWRVFSAIFLHAGFMHVFFNMFSL 80
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS--PAVGASGAIFGLVGSFAVFIM 252
GP +EKI G R++ +Y S I + +Y F +S ++GASGAIFG+ G+F +
Sbjct: 81 YLFGPELEKIAGKARFITIYLVSGIVGNMATYIFYDSSYASLGASGAIFGIFGAFGALVY 140
Query: 253 RHR 255
R
Sbjct: 141 YTR 143
>gi|386714819|ref|YP_006181142.1| S54 family peptidase [Halobacillus halophilus DSM 2266]
gi|384074375|emb|CCG45868.1| S54 family peptidase [Halobacillus halophilus DSM 2266]
Length = 510
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 89/160 (55%), Gaps = 11/160 (6%)
Query: 132 QWTNILLAVNVLVYI---AQFATQD--KLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
Q T ILLAVN+L+++ +Q +T L+ +GAK N I +G++WR+ +S FLH + H
Sbjct: 183 QMTYILLAVNILLFMFVESQGSTTSVSTLIEFGAKYNPAIMEGEWWRIGSSMFLHIGLLH 242
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
L++N +L IG +E+I G R+ +Y + I S+ A GASGAIFGL G+
Sbjct: 243 LLMNMLALYYIGIAVERIYGTWRFSVIYLLAGIFGGVASFMLNPHVAAGASGAIFGLFGA 302
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANIV 286
F +RHR + + + +IF + + AF +V
Sbjct: 303 LLYFGVRHRQLF------FKTMGWNLIFVIALNIAFGIMV 336
>gi|255551392|ref|XP_002516742.1| conserved hypothetical protein [Ricinus communis]
gi|223544115|gb|EEF45640.1| conserved hypothetical protein [Ricinus communis]
Length = 429
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 85/149 (57%), Gaps = 9/149 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDK---------LLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T+IL+++N+ V++ + A+ + LL+GAKIN LI G++WRL T FLH+ +
Sbjct: 178 TSILVSINIAVFLFELASPVRNSEFELFTLPLLYGAKINDLILVGEWWRLLTPMFLHSGV 237
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
H+ + C+SL + GP + + G ++ ++ I+ + S+ P VG +G IF ++
Sbjct: 238 FHMALGCWSLLTFGPQVSRGYGSFTFVLIFILGGISGNLTSFLHTPEPTVGGTGPIFAII 297
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVII 273
G++ VF M++++++ E +II
Sbjct: 298 GAWLVFQMQNKDVIAKDISESMFQKAIII 326
>gi|345022094|ref|ZP_08785707.1| hypothetical protein OTW25_12319 [Ornithinibacillus scapharcae
TW25]
Length = 517
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 75/129 (58%), Gaps = 5/129 (3%)
Query: 134 TNILLAVNVLVYIA-QF----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +L+A+N ++Y+ +F + + L+ +GAK N LI G++WR+ TS FLH + H +
Sbjct: 187 TYLLIAINAILYLLLEFNGGSESNETLIEYGAKFNPLILDGEWWRVVTSMFLHIGLFHFI 246
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N L G EKI G R+ +Y + IA S S+ F + + GASGA++GL G+F
Sbjct: 247 SNMLFLYYFGSLAEKIYGSLRFFFIYMLAGIAGSVASFAFVTNLSAGASGALYGLFGAFI 306
Query: 249 VFIMRHRNI 257
F + H+ I
Sbjct: 307 YFGLFHKKI 315
>gi|374581478|ref|ZP_09654572.1| putative membrane protein [Desulfosporosinus youngiae DSM 17734]
gi|374417560|gb|EHQ89995.1| putative membrane protein [Desulfosporosinus youngiae DSM 17734]
Length = 313
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 81/133 (60%), Gaps = 5/133 (3%)
Query: 134 TNILLAVNVLVYI----AQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T I+++VN++VY+ A +T ++L+ +GAK+NSLI G+ WR TS F+H HL+
Sbjct: 136 TYIIISVNLIVYLLMTLAGGSTDQRVLIEFGAKVNSLIQAGEIWRFFTSMFIHIGFMHLI 195
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N Y+ S+GP +E+ G R+ +Y S + S S+ F + + GASGAIFGL+G+
Sbjct: 196 FNLYAFWSLGPFIEERFGHWRFFTIYSLSGLGGSIASFFFSPALSAGASGAIFGLLGALF 255
Query: 249 VFIMRHRNILGGG 261
+ ++ ++ G
Sbjct: 256 YYSIKRPSLWKSG 268
>gi|393199141|ref|YP_006460983.1| membrane protein [Solibacillus silvestris StLB046]
gi|406666244|ref|ZP_11074012.1| Rhomboid protease gluP [Bacillus isronensis B3W22]
gi|327438472|dbj|BAK14837.1| uncharacterized membrane protein [Solibacillus silvestris StLB046]
gi|405385783|gb|EKB45214.1| Rhomboid protease gluP [Bacillus isronensis B3W22]
Length = 207
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 88/153 (57%), Gaps = 7/153 (4%)
Query: 137 LLAVNVLVYIAQF--ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
++A+N++V++ ++LL G +N LI G++WR+ TS FLHA H++ N +SL
Sbjct: 21 IIAINLIVFVLTLIPGFGEELLYAGMSVNGLIAAGEWWRIITSMFLHAGFMHVLFNMFSL 80
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS--PAVGASGAIFGLVGSFAVFIM 252
GP +EKI G R+L +YF + I A +Y ++ +VGASGA++G+ G+F +
Sbjct: 81 FLFGPELEKIAGKMRFLTIYFLAGIFGVAATYATQDAYYASVGASGALYGIFGAFGALVY 140
Query: 253 RHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
R++ + Q + +I+ +++ + NI
Sbjct: 141 YTRHLF---PQLRQIILPLIVISIIMTFLTPNI 170
>gi|345857374|ref|ZP_08809813.1| rhomboid family protein [Desulfosporosinus sp. OT]
gi|344329492|gb|EGW40831.1| rhomboid family protein [Desulfosporosinus sp. OT]
Length = 328
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 71/124 (57%), Gaps = 2/124 (1%)
Query: 152 QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
Q L+ +GAK+N LI G+ WRL TS F+H I HL N Y+L ++GP E+ G ++L
Sbjct: 168 QRVLIAFGAKVNDLIQAGEVWRLLTSIFIHIGIIHLAFNLYALRALGPLTEEFFGHPKFL 227
Query: 212 GVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+Y S + S SY F + + GASGAIFGL+G+ + ++ + G +L V
Sbjct: 228 MIYMFSGLGGSIASYLFSPALSAGASGAIFGLLGALLYYCIKRPYLWKSGLG--MNLVVV 285
Query: 272 IIFN 275
I+ N
Sbjct: 286 ILVN 289
>gi|433462194|ref|ZP_20419783.1| S54 family peptidase [Halobacillus sp. BAB-2008]
gi|432189083|gb|ELK46216.1| S54 family peptidase [Halobacillus sp. BAB-2008]
Length = 510
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 77/130 (59%), Gaps = 5/130 (3%)
Query: 134 TNILLAVNVLVYI----AQFATQ-DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +LLAVNV +++ A +T + L+ +GAK N I +G++WRL TS FLH + HLM
Sbjct: 184 TYLLLAVNVALFLLLEWAGGSTNVETLIEYGAKFNPAIMEGEWWRLVTSMFLHIGLIHLM 243
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
+N +L IG +E+I G RY+ +Y + + S S+ + GASGAIFGL G+
Sbjct: 244 MNMLALYYIGTAVERIYGSWRYIIIYLLAGVFGSVASFMLNPQVSAGASGAIFGLFGALL 303
Query: 249 VFIMRHRNIL 258
F + +R +
Sbjct: 304 YFGVWNRRLF 313
>gi|318057482|ref|ZP_07976205.1| hypothetical protein SSA3_06048 [Streptomyces sp. SA3_actG]
Length = 341
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 102/199 (51%), Gaps = 29/199 (14%)
Query: 109 RKNSGHEGTSHLDTARTNLFIG-------RQWTNILLAVNVLVYIAQFATQDK------- 154
++ G G + AR G R +T IL+A+N+ V++ A D+
Sbjct: 96 QRGGGGTGRAPRGDARPRTLAGGVVQGDPRLFTKILIALNLAVFLLVQAVPDQQRLLDDL 155
Query: 155 ------LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPR 208
L +GA + +G+++RL T+AFLH I H+ VN SL +GP +E + G
Sbjct: 156 EMLGRALPYYGADHLVGVAEGEWYRLLTAAFLHQEIWHIAVNMLSLWFLGPAIESMLGRA 215
Query: 209 RYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQ 266
R+L +Y +A+ S SY F N+ ++GASGAIFGL G+ + ++R R +++
Sbjct: 216 RFLALYLIAAVGGSVASYLFAAPNAASLGASGAIFGLFGATGILVLRVR-------ADVR 268
Query: 267 HLAKVIIFNMVCSAAFANI 285
+++ N++ + ++NI
Sbjct: 269 PFVALLVINLIITFGWSNI 287
>gi|336234689|ref|YP_004587305.1| rhomboid protease [Geobacillus thermoglucosidasius C56-YS93]
gi|335361544|gb|AEH47224.1| Rhomboid protease [Geobacillus thermoglucosidasius C56-YS93]
Length = 389
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 84/158 (53%), Gaps = 11/158 (6%)
Query: 134 TNILLAVNVLVYIAQ-----FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T I +A+ V+V++ D L+ +GAK N LI G++WR T FLH HL+
Sbjct: 186 TYIFIALQVIVFLLMEWSGGSTNPDVLIKYGAKFNPLIQAGEWWRFFTPIFLHIGFLHLL 245
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
+N ++L +G T+E++ G R+ +YF++ + S+ F S + GASGAIFGL G+
Sbjct: 246 MNTFALYYLGMTVERLYGSWRFFFIYFTAGFFGTLGSFLFTASLSAGASGAIFGLFGALL 305
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANIV 286
F +R++ Q + II +V + F IV
Sbjct: 306 YFGTVYRHLF------WQTIGTNIIGLIVINLVFGMIV 337
>gi|423719255|ref|ZP_17693437.1| rhomboid family protein [Geobacillus thermoglucosidans TNO-09.020]
gi|383368158|gb|EID45433.1| rhomboid family protein [Geobacillus thermoglucosidans TNO-09.020]
Length = 389
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 84/158 (53%), Gaps = 11/158 (6%)
Query: 134 TNILLAVNVLVYIAQ-----FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T I +A+ V+V++ D L+ +GAK N LI G++WR T FLH HL+
Sbjct: 186 TYIFIALQVIVFLLMEWNGGSTNPDVLIKYGAKFNPLIQAGEWWRFFTPIFLHIGFLHLL 245
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
+N ++L +G T+E++ G R+ +YF++ + S+ F S + GASGAIFGL G+
Sbjct: 246 MNTFALYYLGMTVERLYGSWRFFFIYFTAGFFGTLGSFLFTASLSAGASGAIFGLFGALL 305
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANIV 286
F +R++ Q + II +V + F IV
Sbjct: 306 YFGTVYRHLF------WQTIGTNIIGLIVINLVFGMIV 337
>gi|318080696|ref|ZP_07988028.1| hypothetical protein SSA3_29396 [Streptomyces sp. SA3_actF]
Length = 248
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 94/170 (55%), Gaps = 22/170 (12%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDK-------------LLLWGAKINSLIDKGQFWRLATS 177
R +T IL+A+N+ V++ A D+ L +GA + +G+++RL T+
Sbjct: 32 RLFTKILIALNLAVFLLVQAVPDQQRLLDDLEMLGRALPYYGADHLVGVAEGEWYRLLTA 91
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVG 235
AFLH I H+ VN SL +GP +E + G R+L +Y +A+ S SY F N+ ++G
Sbjct: 92 AFLHQEIWHIAVNMLSLWFLGPAIESMLGRARFLALYLIAAVGGSVASYLFAAPNAASLG 151
Query: 236 ASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
ASGAIFGL G+ + ++R R +++ +++ N++ + ++NI
Sbjct: 152 ASGAIFGLFGATGILVLRVR-------ADVRPFVALLVINLIITFGWSNI 194
>gi|159485784|ref|XP_001700924.1| rhomboid-like protease [Chlamydomonas reinhardtii]
gi|158281423|gb|EDP07178.1| rhomboid-like protease [Chlamydomonas reinhardtii]
Length = 440
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 83/151 (54%), Gaps = 3/151 (1%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
RQ TN+ LA+NV Y+ T ++L A I + +G++ RL T+ FLH + HL+ N
Sbjct: 233 RQVTNLFLAINVATYLVAR-TDRSVVLAMAAIPHEVARGEWHRLLTAGFLHTDFLHLLSN 291
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSFA 248
+L+ +GP +E G R+ +Y S +A SA Y + V GASG + GL ++
Sbjct: 292 MLALHWLGPDLESAAGRGRFAAIYLLSVVAGSAAQYAWGGWGTVSWGASGGVAGLFAAYV 351
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMVCS 279
+ +R+RN G ++ +A+V+ N+V S
Sbjct: 352 TYRLRNRNYTGWSSADMSWVAQVVGLNVVLS 382
>gi|311069089|ref|YP_003974012.1| membrane endopeptidase [Bacillus atrophaeus 1942]
gi|419820266|ref|ZP_14343877.1| membrane endopeptidase [Bacillus atrophaeus C89]
gi|310869606|gb|ADP33081.1| membrane endopeptidase [Bacillus atrophaeus 1942]
gi|388475418|gb|EIM12130.1| membrane endopeptidase [Bacillus atrophaeus C89]
Length = 511
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 64/105 (60%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI G++WRL T LH +AHL N ++L SIG +EKI G R+L
Sbjct: 210 ETLVAFGAKENSLIAAGEWWRLVTPIVLHIGLAHLAFNTFALWSIGTAVEKIYGSGRFLL 269
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
+Y + + S S+ F P+ GASGAIFG +G+ + +R +
Sbjct: 270 IYLLAGVTGSIASFVFSPYPSAGASGAIFGCLGALLYLAVSNRKL 314
>gi|339480868|ref|ZP_08656527.1| membrane-associated serine protease [Leuconostoc
pseudomesenteroides KCTC 3652]
Length = 230
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 74/132 (56%), Gaps = 9/132 (6%)
Query: 134 TNILLAVNVLVYIAQF----ATQDK---LLLWGAKINSLI-DKGQFWRLATSAFLHANIA 185
T ILL V ++V++ + T D L+ GAK I D Q+WRL T FLHA
Sbjct: 17 TTILLTVTIVVFVIELVVSGGTTDNSYFLVQVGAKWGPYIKDDSQYWRLITPIFLHAGFM 76
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLV 244
H++ N +L IGP E G R++LG+YF S I+ + SY F N+ +VGAS A+FGL
Sbjct: 77 HIVTNMLTLWFIGPIAEDAFGSRKFLGLYFFSGISGNIFSYLFSPNTISVGASTALFGLF 136
Query: 245 GSFAVFIMRHRN 256
G +F + R+
Sbjct: 137 GGLMIFAYQFRH 148
>gi|333025703|ref|ZP_08453767.1| putative rhomboid family protein [Streptomyces sp. Tu6071]
gi|332745555|gb|EGJ75996.1| putative rhomboid family protein [Streptomyces sp. Tu6071]
Length = 341
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 94/170 (55%), Gaps = 22/170 (12%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDK-------------LLLWGAKINSLIDKGQFWRLATS 177
R +T IL+A+N+ V++ A D+ L +GA + +G+++RL T+
Sbjct: 125 RLFTKILIALNLAVFLLVQAVPDQQRLLDDLEMLGRALPYYGADHLVGVAEGEWYRLLTA 184
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVG 235
AFLH I H+ VN SL +GP +E + G R+L +Y +A+ S SY F N+ ++G
Sbjct: 185 AFLHQEIWHIAVNMLSLWFLGPAIESMLGRARFLALYLIAAVGGSVASYLFAAPNAASLG 244
Query: 236 ASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
ASGAIFGL G+ + ++R R +++ +++ N++ + ++NI
Sbjct: 245 ASGAIFGLFGATGILVLRVR-------ADVRPFVALLVINLIITFGWSNI 287
>gi|290958988|ref|YP_003490170.1| hypothetical protein SCAB_45641 [Streptomyces scabiei 87.22]
gi|260648514|emb|CBG71625.1| putative integral membrane protein [Streptomyces scabiei 87.22]
Length = 297
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 79/138 (57%), Gaps = 13/138 (9%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKL-----LLWGAKINSL------IDKGQFWRLATSAF 179
R T IL+ VN+L+++ Q D L+ A + L + +GQ++RL TS F
Sbjct: 82 RLLTKILIGVNLLLFLVQQILGDTFTDRFDLIGRAWVPELGTSLQGVAEGQWYRLVTSMF 141
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGAS 237
LH ++ H++ N SL IG +E G RYL +YF+S +A SA++Y N P++GAS
Sbjct: 142 LHGSVTHILFNMLSLWWIGGPLEAALGRARYLTLYFASGLAGSALTYLLAAPNQPSLGAS 201
Query: 238 GAIFGLVGSFAVFIMRHR 255
GAIFGL G+ V + R R
Sbjct: 202 GAIFGLFGATGVLMRRLR 219
>gi|294630362|ref|ZP_06708922.1| membrane protein [Streptomyces sp. e14]
gi|292833695|gb|EFF92044.1| membrane protein [Streptomyces sp. e14]
Length = 282
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 94/167 (56%), Gaps = 19/167 (11%)
Query: 131 RQWTNILLAVNVLVYIAQF----ATQDKLLLWG----AKINSL--IDKGQFWRLATSAFL 180
R T +L+ +N+ ++ Q A D+ L G + NS+ + +GQ++RL T+ FL
Sbjct: 69 RLVTKVLIGLNLAFFLVQLSVGDAFTDRFSLLGQAYVPQFNSVEGVAQGQWYRLITAMFL 128
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASG 238
HAN H++ N SL IG +E G RYL +YF S +A SA++Y N P++GASG
Sbjct: 129 HANYFHILFNMLSLWWIGGPLEAALGRARYLALYFVSGLAGSALTYLLAAPNQPSLGASG 188
Query: 239 AIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
AIFGL G+ AV + R R +++ + +++ N++ + + +I
Sbjct: 189 AIFGLFGATAVLMRRLRY-------DMRPVIALLVINLIITFGWGSI 228
>gi|340356603|ref|ZP_08679245.1| S54 family unassigned serine peptidase [Sporosarcina newyorkensis
2681]
gi|339620530|gb|EGQ25099.1| S54 family unassigned serine peptidase [Sporosarcina newyorkensis
2681]
Length = 202
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 84/153 (54%), Gaps = 7/153 (4%)
Query: 137 LLAVNVLVYIAQF--ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
LLA+N+ ++I + ++LLL+G N LI G++WRL T FLH + HL+ N +SL
Sbjct: 21 LLALNIGIFILTWIPGIGNQLLLFGIGDNFLIANGEYWRLVTPMFLHGGLTHLLFNMFSL 80
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA--VGASGAIFGLVGSFAVFIM 252
GP +EKI G R++ +Y + + +Y + +GASGAIFG+ G+F +
Sbjct: 81 FIFGPELEKIAGKARFITIYMLAGLFGDVATYFLQSGDYRHLGASGAIFGVFGAFGALVY 140
Query: 253 RHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
+++ + Q + +I+ ++V + NI
Sbjct: 141 YTKHVF---PQLKQVILPIIVISVVMTFVGTNI 170
>gi|386759084|ref|YP_006232300.1| membrane endopeptidase [Bacillus sp. JS]
gi|384932366|gb|AFI29044.1| membrane endopeptidase [Bacillus sp. JS]
Length = 503
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 5/130 (3%)
Query: 133 WTNILLAVNVLVYI-----AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T + +A+ VL++ + L+ +GAK NSLI +G++WRL T LH IAHL
Sbjct: 175 FTYLFIALQVLMFFVLEINGGSTNTETLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHL 234
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
N +L S+G +E++ G R+L +Y ++ I S S+ F P+ GASGAIFG +G+
Sbjct: 235 AFNTLALWSVGTAVERMYGSGRFLLIYLAAGITGSIASFVFSPYPSAGASGAIFGCLGAL 294
Query: 248 AVFIMRHRNI 257
+ +R +
Sbjct: 295 LYVALSNRKM 304
>gi|392426192|ref|YP_006467186.1| putative membrane protein [Desulfosporosinus acidiphilus SJ4]
gi|391356155|gb|AFM41854.1| putative membrane protein [Desulfosporosinus acidiphilus SJ4]
Length = 322
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 78/148 (52%), Gaps = 7/148 (4%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T + +N+LV++ QD L+ +GAK+NSLI GQ WRL TS F+H HL
Sbjct: 135 TYAFIGINLLVFLLMTLAGGSENQDVLIAFGAKVNSLIQAGQVWRLLTSMFIHIGYFHLA 194
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N Y+L ++GP E G +Y +Y S + + S+ F + GASGAI GL+G+
Sbjct: 195 FNLYALWALGPLTELSYGHGKYFAIYMLSGLGGAMASFLFSPFLSAGASGAIMGLLGAQL 254
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNM 276
FI + + G +L VI+ N+
Sbjct: 255 FFIYKRPYLWKSGLG--MNLVIVILVNL 280
>gi|407796208|ref|ZP_11143164.1| S54 family peptidase [Salimicrobium sp. MJ3]
gi|407019562|gb|EKE32278.1| S54 family peptidase [Salimicrobium sp. MJ3]
Length = 507
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 63/100 (63%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GAK N I +G++WRL +S FLH + HL++N +L +G +E+I G R+ +Y
Sbjct: 210 LIEYGAKYNPGIIEGEWWRLISSMFLHIGVLHLLMNMLALFYLGTAVEQIYGSFRFTMIY 269
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRH 254
F + I SA S+ F S A GASGAIFGL G+ F R+
Sbjct: 270 FLAGILGSAASFYFNTSVAAGASGAIFGLFGALLYFAWRY 309
>gi|82703577|ref|YP_413143.1| rhomboid-like protein [Nitrosospira multiformis ATCC 25196]
gi|82411642|gb|ABB75751.1| Rhomboid-like protein [Nitrosospira multiformis ATCC 25196]
Length = 371
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 75/135 (55%), Gaps = 10/135 (7%)
Query: 134 TNILLAVNVLVYIAQFATQDKL--------LLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T +L++ N+L+++A A+ L L WGA G++WRL T+ FLH +
Sbjct: 18 TKLLVSTNLLIFVAMLASGAGLWHSSNGVQLAWGANFGPATQDGEWWRLGTAMFLHFGLV 77
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGL 243
HL +N ++L G +E++ G R+ +YF+S +A + +S A+ GASGAIFGL
Sbjct: 78 HLTLNLWALWDAGQLVERMYGHARFTALYFASGLAGNLLSLVAHKGLAISGGASGAIFGL 137
Query: 244 VGSFAVFIMRHRNIL 258
G+ VF+ R R L
Sbjct: 138 YGALLVFLWRERGRL 152
>gi|182418411|ref|ZP_02949705.1| rhomboid family protein [Clostridium butyricum 5521]
gi|237666444|ref|ZP_04526429.1| rhomboid family protein [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182377793|gb|EDT75337.1| rhomboid family protein [Clostridium butyricum 5521]
gi|237657643|gb|EEP55198.1| rhomboid family protein [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 354
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 74/133 (55%), Gaps = 5/133 (3%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ GAK + LI G+ WRL + AFLH + H+ N Y L IGP +E+I G +Y+ +Y
Sbjct: 196 LIFLGAKYSPLIYDGEIWRLISCAFLHGSFLHIACNMYMLYIIGPQIERIYGKVKYIFIY 255
Query: 215 FSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVF-IMRHRNILGGGKEELQHLAKVI 272
S I SS +S +S +VGASG IFGL+G+ F ++ +NI +E L K I
Sbjct: 256 LISCITSSTLSLIINPDSISVGASGGIFGLMGALLAFALIERKNI---DREYTVGLIKTI 312
Query: 273 IFNMVCSAAFANI 285
N+V NI
Sbjct: 313 GINLVIGLIIINI 325
>gi|1303863|dbj|BAA12519.1| YqgP [Bacillus subtilis]
Length = 507
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 75/133 (56%), Gaps = 4/133 (3%)
Query: 125 TNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T LFI Q +L ++L + L+ +GAK NSLI +G++WRL T LH I
Sbjct: 180 TYLFIALQ----ILMFSLLEINGGSTNTETLVAFGAKENSLIAQGEWWRLLTPIVLHIGI 235
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
AHL N +L S+G +E++ G R+L +Y ++ I S S+ F P+ GASGAIFG +
Sbjct: 236 AHLAFNTLALWSVGTAVERMYGSGRFLLIYLAAGITGSIASFVFSPYPSAGASGAIFGCL 295
Query: 245 GSFAVFIMRHRNI 257
G+ + +R +
Sbjct: 296 GALLYVALSNRKM 308
>gi|336114379|ref|YP_004569146.1| rhomboid family protein [Bacillus coagulans 2-6]
gi|335367809|gb|AEH53760.1| Rhomboid family protein [Bacillus coagulans 2-6]
Length = 355
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 70/130 (53%), Gaps = 5/130 (3%)
Query: 133 WTNILLAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T + LAV + V+I T L+ +GAK N LI +GQ+WRL F+H I HL
Sbjct: 148 FTYVFLAVQIAVFIVMSLTGGTQNTQNLIRFGAKYNPLIMEGQYWRLIMPVFIHIGIMHL 207
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
+N SL IGP +E+I G R+ +Y + S+ F S + GASGAIFGL G+
Sbjct: 208 FMNSLSLYYIGPLVERIYGKARFALIYLFAGFTGCLASFLFSPSLSAGASGAIFGLFGAL 267
Query: 248 AVFIMRHRNI 257
+R++
Sbjct: 268 LYIGTAYRDL 277
>gi|366053016|ref|ZP_09450738.1| membrane-associated serine protease [Lactobacillus suebicus KCTC
3549]
Length = 223
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 74/114 (64%), Gaps = 2/114 (1%)
Query: 136 ILLAVNVLVYIAQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
I + V +L+ +A +T ++L+ +GAK+ +LI +GQ+WRL T FLH + HL+VN ++
Sbjct: 19 IQVIVFILMTVAGGSTNTQILIEFGAKVGTLIQEGQWWRLITPVFLHIGLMHLVVNSVTV 78
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSF 247
IG +E + G R+L +YF SA+ + S+ F NS + GAS AIFGL G+F
Sbjct: 79 YYIGTQIENMFGHARFLSIYFVSALTGNLASFVFLPNSLSAGASTAIFGLFGAF 132
>gi|221310411|ref|ZP_03592258.1| hypothetical protein Bsubs1_13621 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221314734|ref|ZP_03596539.1| hypothetical protein BsubsN3_13537 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221319657|ref|ZP_03600951.1| hypothetical protein BsubsJ_13458 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221323934|ref|ZP_03605228.1| hypothetical protein BsubsS_13592 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|255767560|ref|NP_390367.2| membrane endopeptidase [Bacillus subtilis subsp. subtilis str. 168]
gi|418032339|ref|ZP_12670822.1| hypothetical protein BSSC8_17660 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|452915762|ref|ZP_21964388.1| rhomboid protease gluP [Bacillus subtilis MB73/2]
gi|251757277|sp|P54493.2|GLUP_BACSU RecName: Full=Rhomboid protease GluP; AltName: Full=Intramembrane
serine protease
gi|225185188|emb|CAB14418.2| membrane endopeptidase [Bacillus subtilis subsp. subtilis str. 168]
gi|351471202|gb|EHA31323.1| hypothetical protein BSSC8_17660 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|407959733|dbj|BAM52973.1| membrane endopeptidase [Bacillus subtilis BEST7613]
gi|407965308|dbj|BAM58547.1| membrane endopeptidase [Bacillus subtilis BEST7003]
gi|452116110|gb|EME06506.1| rhomboid protease gluP [Bacillus subtilis MB73/2]
Length = 507
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 65/105 (61%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI +G++WRL T LH IAHL N +L S+G +E++ G R+L
Sbjct: 204 ETLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGRFLL 263
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
+Y ++ I S S+ F P+ GASGAIFG +G+ + +R +
Sbjct: 264 IYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNRKM 308
>gi|384176109|ref|YP_005557494.1| YqgP [Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|349595333|gb|AEP91520.1| YqgP [Bacillus subtilis subsp. subtilis str. RO-NN-1]
Length = 507
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 65/105 (61%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI +G++WRL T LH IAHL N +L S+G +E++ G R+L
Sbjct: 204 ETLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGRFLL 263
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
+Y ++ I S S+ F P+ GASGAIFG +G+ + +R +
Sbjct: 264 IYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNRKM 308
>gi|402776749|ref|YP_006630693.1| membrane endopeptidase [Bacillus subtilis QB928]
gi|402481929|gb|AFQ58438.1| Membrane endopeptidase [Bacillus subtilis QB928]
Length = 505
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 65/105 (61%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI +G++WRL T LH IAHL N +L S+G +E++ G R+L
Sbjct: 202 ETLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGRFLL 261
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
+Y ++ I S S+ F P+ GASGAIFG +G+ + +R +
Sbjct: 262 IYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNRKM 306
>gi|449094984|ref|YP_007427475.1| hypothetical protein C663_2371 [Bacillus subtilis XF-1]
gi|449028899|gb|AGE64138.1| hypothetical protein C663_2371 [Bacillus subtilis XF-1]
Length = 507
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 65/105 (61%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI +G++WRL T LH IAHL N +L S+G +E++ G R+L
Sbjct: 204 ETLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGRFLL 263
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
+Y ++ I S S+ F P+ GASGAIFG +G+ + +R +
Sbjct: 264 IYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNRKM 308
>gi|430759046|ref|YP_007208970.1| hypothetical protein A7A1_3554 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|430023566|gb|AGA24172.1| Hypothetical protein YqgP [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 507
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 65/105 (61%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI +G++WRL T LH IAHL N +L S+G +E++ G R+L
Sbjct: 204 ETLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGRFLL 263
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
+Y ++ I S S+ F P+ GASGAIFG +G+ + +R +
Sbjct: 264 IYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNRKM 308
>gi|428279976|ref|YP_005561711.1| hypothetical protein BSNT_03714 [Bacillus subtilis subsp. natto
BEST195]
gi|291484933|dbj|BAI86008.1| hypothetical protein BSNT_03714 [Bacillus subtilis subsp. natto
BEST195]
Length = 507
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 65/105 (61%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI +G++WRL T LH IAHL N +L S+G +E++ G R+L
Sbjct: 204 ETLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGRFLL 263
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
+Y ++ I S S+ F P+ GASGAIFG +G+ + +R +
Sbjct: 264 IYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNRKM 308
>gi|381210355|ref|ZP_09917426.1| hypothetical protein LGrbi_10556 [Lentibacillus sp. Grbi]
Length = 520
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 75/130 (57%), Gaps = 6/130 (4%)
Query: 134 TNILLAVNVLVYI-----AQFATQDKLLLWGAKIN-SLIDKGQFWRLATSAFLHANIAHL 187
T LL VN+ +++ + + L+ +GAK N ++I+ G++WR+ S FLH I HL
Sbjct: 186 TYFLLTVNIFMFLLLELNGNSTSTETLIEFGAKYNPAIIEDGEWWRIVASMFLHIGILHL 245
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
++N ++ +G +E+I G R+L +YF + I S+ F + + GASGA+FGL G+
Sbjct: 246 LMNMLAVYYLGTVVERIYGSLRFLIIYFLAGIGGGLASFAFTTNVSAGASGALFGLFGAL 305
Query: 248 AVFIMRHRNI 257
F HR I
Sbjct: 306 LFFGCIHRRI 315
>gi|344175988|emb|CCA87141.1| putative rhomboid protease [Ralstonia syzygii R24]
Length = 543
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 12/156 (7%)
Query: 134 TNILLAVNVLVYIAQFATQ--------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T+ L+A+NVLV++A D L G + G++WRL ++ FLHA +
Sbjct: 182 THALIALNVLVWLATPGLGGNLLQTPIDVLFKLGGNAAFEVQHGEWWRLLSATFLHAGVL 241
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA--VGASGAIFGL 243
HL++N L + G +E+I GP YL +Y + + SA+S F A VGASGA+FG+
Sbjct: 242 HLVINVIGLYATGIAVERIYGPAAYLLIYLGAGLLGSALSLSFAAQHAIGVGASGAVFGV 301
Query: 244 VGSFAVFIMRHRNILGG--GKEELQHLAKVIIFNMV 277
G++ V I R+R + K L L +++++V
Sbjct: 302 AGAWLVAICRYRGQMPATLSKRLLTQLGMFVLYSLV 337
>gi|356545710|ref|XP_003541279.1| PREDICTED: uncharacterized protein LOC100808799 [Glycine max]
Length = 503
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 95/171 (55%), Gaps = 16/171 (9%)
Query: 112 SGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDK---------LLLWGAKI 162
S + H++T+ L IG IL +VN+ V++ + A+ + LL+GAKI
Sbjct: 234 SAIDSQQHVETSSLYL-IG-----ILASVNIAVFLFEIASPIRNSDLELFSIPLLYGAKI 287
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
N LI G++WRL T FLHA I H+ V+C++L + GP + K G + +Y +A +
Sbjct: 288 NHLIMVGEWWRLVTPMFLHAGIFHMAVSCWALLTFGPQVCKGYGSFTFFLIYILGGVACN 347
Query: 223 AMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGG-GKEELQHLAKVI 272
+S+ P VG +G +F ++G++ ++ +++++++ E L H A ++
Sbjct: 348 FISFLHTPDPTVGGTGPVFAIIGAWLMYQIQNKDVIASDASENLFHKAVIM 398
>gi|399516625|ref|ZP_10758222.1| Membrane-associated serine protease [Leuconostoc
pseudomesenteroides 4882]
gi|398648534|emb|CCJ66249.1| Membrane-associated serine protease [Leuconostoc
pseudomesenteroides 4882]
Length = 227
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 74/132 (56%), Gaps = 9/132 (6%)
Query: 134 TNILLAVNVLVYIAQF----ATQDK---LLLWGAKINSLID-KGQFWRLATSAFLHANIA 185
T ILL V V+V++ + T D L+ GAK I Q+WRL T FLHA
Sbjct: 14 TTILLTVTVVVFLIELVVSGGTTDNSYFLVQVGAKWGPYIKGDSQYWRLITPIFLHAGFM 73
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLV 244
H+ N +L IGP E G R++LG+YF S I+ + SY F N+ +VGAS A+FGL
Sbjct: 74 HIATNMLTLWFIGPIAEDAFGSRKFLGLYFFSGISGNIFSYLFSPNTISVGASTALFGLF 133
Query: 245 GSFAVFIMRHRN 256
GS +F ++R+
Sbjct: 134 GSLMIFAYQYRH 145
>gi|356573948|ref|XP_003555116.1| PREDICTED: uncharacterized protein LOC100815930 [Glycine max]
Length = 468
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 87/160 (54%), Gaps = 9/160 (5%)
Query: 114 HEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKL---------LLWGAKINS 164
H+ S +D+ + IL +VN+ V++ + A+ + LL+GAKIN
Sbjct: 230 HDPRSAIDSQQQVETSSLYLIGILASVNIAVFLFEIASPIRTSDLELFSIPLLYGAKINH 289
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
LI G++WRL T FLHA I H+ V+C++L + GP + K G + +Y +A +
Sbjct: 290 LIMVGEWWRLVTPMFLHAGIFHMAVSCWALLTFGPQVCKGYGSFTFFLIYILGGVACNFT 349
Query: 225 SYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEE 264
S+ + P VG +G +F ++G++ ++ +++++++ E
Sbjct: 350 SFLHTSDPTVGGTGPVFAIIGAWLMYQIQNKHVIASDASE 389
>gi|381394664|ref|ZP_09920376.1| hypothetical protein GPUN_1385 [Glaciecola punicea DSM 14233 = ACAM
611]
gi|379329631|dbj|GAB55509.1| hypothetical protein GPUN_1385 [Glaciecola punicea DSM 14233 = ACAM
611]
Length = 211
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 69/120 (57%), Gaps = 5/120 (4%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
T ++A N+L + QFATQD L G L+ GQ+WR+ +S FLH +I H+ N Y
Sbjct: 11 TLTIMAANILFFAGQFATQDMLTNMGLLYGPLVQDGQYWRMISSGFLHGSILHIAFNMYL 70
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASS--AMSYRFCNSPAVGASGAIFGLVGSFAVFI 251
L +GP +E G R+ +YF + I + +S+ F P +GASGA+ GL G A+FI
Sbjct: 71 LYMLGPQLESALGSVRFSLMYFGALIGGTLAVLSFGFMQ-PTLGASGAVLGLAG--AMFI 127
>gi|357400681|ref|YP_004912606.1| hypothetical protein SCAT_3097 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|386356736|ref|YP_006054982.1| hypothetical protein SCATT_30890 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|337767090|emb|CCB75801.1| conserved membrane protein of unknown function [Streptomyces
cattleya NRRL 8057 = DSM 46488]
gi|365807244|gb|AEW95460.1| hypothetical protein SCATT_30890 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
Length = 282
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 95/176 (53%), Gaps = 19/176 (10%)
Query: 131 RQWTNILLAVNVLVYIAQFATQD----KLLLWGA----KINSLIDKGQFWRLATSAFLHA 182
R T IL+ +NV V++A A D L+L+GA S + +GQ++RL T+ FLH
Sbjct: 69 RLITMILIGINVAVFLAVQAVGDSLVQDLILYGAWPPVDPTSGVAEGQWYRLLTATFLHQ 128
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA--VGASGAI 240
N+ H+ N SL IGP +E G R+L VY SA+ SA+S+ N A +GASGA+
Sbjct: 129 NVMHIGFNMLSLWWIGPGLEVALGRVRFLAVYLLSALGGSALSFLLANPNAGSLGASGAV 188
Query: 241 FGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANIVKIESRHTLTG 296
FGL+G+ V + R R + + + +I+ N+ + FA I+ R + G
Sbjct: 189 FGLLGATFVLMRRLRY-------DSRPIVAIIVLNLFFT--FAQTGTIDWRAHIGG 235
>gi|429195115|ref|ZP_19187166.1| peptidase, S54 family [Streptomyces ipomoeae 91-03]
gi|428669169|gb|EKX68141.1| peptidase, S54 family [Streptomyces ipomoeae 91-03]
Length = 296
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 101/195 (51%), Gaps = 23/195 (11%)
Query: 104 NGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLL------- 156
+G G ++ H T T T+ R T +L+ VN+LV++ Q + D+
Sbjct: 58 SGTGHAPSASHPRTIAGGTVTTD---PRLLTKLLVGVNLLVFLVQLSLGDRFTDRFDLIG 114
Query: 157 -LWGAKINSLID---KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
W ++ S + +GQ++RL TS FLH ++ H+ N SL +G +E G RY+
Sbjct: 115 RAWVPELGSTLQGVAEGQWYRLLTSMFLHGSVMHIAFNMLSLWWLGGPLEAALGRARYIA 174
Query: 213 VYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK 270
+YF S +A A++Y N ++GASGAIFGL G+ AV + R K +++ +
Sbjct: 175 LYFVSGLAGGALTYLLAAPNQASLGASGAIFGLFGATAVLMRRL-------KYDMRPVVI 227
Query: 271 VIIFNMVCSAAFANI 285
+++ N++ + ++ I
Sbjct: 228 LLVINLIITFGWSGI 242
>gi|296333354|ref|ZP_06875807.1| membrane endopeptidase [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305675141|ref|YP_003866813.1| membrane endopeptidase [Bacillus subtilis subsp. spizizenii str.
W23]
gi|296149552|gb|EFG90448.1| membrane endopeptidase [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305413385|gb|ADM38504.1| membrane endopeptidase [Bacillus subtilis subsp. spizizenii str.
W23]
Length = 506
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 64/106 (60%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI G++WRL T LH IAHL N +L S+G +E++ G R+L
Sbjct: 204 ETLVAFGAKENSLIAAGEWWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGRFLL 263
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNIL 258
+Y ++ I S S+ F P+ GASGAIFG +G+ + +R +
Sbjct: 264 IYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYIALSNRKMF 309
>gi|443631783|ref|ZP_21115963.1| hypothetical protein BSI_10340 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|443347898|gb|ELS61955.1| hypothetical protein BSI_10340 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
Length = 507
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 73/130 (56%), Gaps = 5/130 (3%)
Query: 133 WTNILLAVNVLVYI-----AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T + +A+ VL++ L+ +GAK NSLI G++WRL T LH IAHL
Sbjct: 179 FTYVFIALQVLMFFLLELNGGSTNTQTLVAFGAKENSLIAAGEWWRLLTPIVLHIGIAHL 238
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
N +L S+G +E++ G R+L +Y ++ I S S+ F P+ GASGAIFG +G+
Sbjct: 239 AFNTLALWSVGTAVERMYGSGRFLLIYLAAGITGSIASFVFSPYPSAGASGAIFGCLGAL 298
Query: 248 AVFIMRHRNI 257
+ +R +
Sbjct: 299 LYVALSNRKM 308
>gi|347753198|ref|YP_004860763.1| Rhomboid family protein [Bacillus coagulans 36D1]
gi|347585716|gb|AEP01983.1| Rhomboid family protein [Bacillus coagulans 36D1]
Length = 377
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 70/131 (53%), Gaps = 5/131 (3%)
Query: 133 WTNILLAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T + LA+ + V+I T L+ +GAK N LI +GQ+WRL T F+H HL
Sbjct: 174 FTYVFLALQIAVFIVMSLTGGTQNTQNLIRFGAKYNPLIMEGQYWRLITPVFIHIGFMHL 233
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
+N SL IGP +E+I G R+ +Y + S+ F S + GASGAIFGL G+
Sbjct: 234 FMNSLSLYYIGPLVERIYGKGRFALIYLFAGFTGCLASFLFSPSLSAGASGAIFGLFGAL 293
Query: 248 AVFIMRHRNIL 258
+R++
Sbjct: 294 LYIGTAYRDLF 304
>gi|94968908|ref|YP_590956.1| rhomboid-like protein [Candidatus Koribacter versatilis Ellin345]
gi|94550958|gb|ABF40882.1| Rhomboid-like protein [Candidatus Koribacter versatilis Ellin345]
Length = 365
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 87/166 (52%), Gaps = 17/166 (10%)
Query: 134 TNILLAVNVLVYIA------QFATQDK--LLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +NV V++A QF D L WGA G++WR+ TS FLH I
Sbjct: 61 TRILIGINVAVFLAMVLLTRQFVEFDTPTALRWGADYGPATASGEWWRMLTSMFLHGGIL 120
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLV 244
H++VN ++L ++G T E G + +L +Y S SA + + +S +VGASGAIFG+
Sbjct: 121 HILVNMFALRNLGYTAELFYGRKNFLIIYMLSGFGGSAATLLWRPDSVSVGASGAIFGVA 180
Query: 245 GSFAVFIM-----RHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
G+ A + R +L K ++ + VI +N++ AA I
Sbjct: 181 GALAAMVYFKKLPVDRALL---KRDIGSIGAVIFYNLLIGAALPII 223
>gi|297539145|ref|YP_003674914.1| Rhomboid family protein [Methylotenera versatilis 301]
gi|297258492|gb|ADI30337.1| Rhomboid family protein [Methylotenera versatilis 301]
Length = 346
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 70/133 (52%), Gaps = 10/133 (7%)
Query: 134 TNILLAVNVLVYIAQFATQDKL--------LLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T +++A N+LV++A L WGA G++WRL T+ FLH I
Sbjct: 18 TKLIIAANILVFVAMLVKGAGFWHSPNAIQLAWGANFGPATQDGEWWRLGTAMFLHFGII 77
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGL 243
HL+VN +SL G +E++ G R+ G+Y S + + +S + AV GASGAIFG+
Sbjct: 78 HLLVNVWSLWDAGQLVERMYGHLRFAGIYVLSGLTGNLVSLVIQGNAAVSGGASGAIFGV 137
Query: 244 VGSFAVFIMRHRN 256
G+ F+ R R
Sbjct: 138 YGALLTFLWRERQ 150
>gi|300694566|ref|YP_003750539.1| rhomboid protease [Ralstonia solanacearum PSI07]
gi|299076603|emb|CBJ35939.1| putative rhomboid protease [Ralstonia solanacearum PSI07]
Length = 543
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 12/156 (7%)
Query: 134 TNILLAVNVLVYIAQFATQ--------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T+ L+A+NVLV++A D L G + G++WRL ++ FLHA +
Sbjct: 182 THALIALNVLVWLATLGLGGNLLQTPIDVLFKLGGNAAFEVQHGEWWRLLSATFLHAGVL 241
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA--VGASGAIFGL 243
HL +N L + G +E+I GP YL +Y + + SA+S F A VGASGA+FG+
Sbjct: 242 HLAINVIGLYATGIAVERIYGPAAYLLIYLGAGLLGSALSLSFAAQHAIGVGASGAVFGV 301
Query: 244 VGSFAVFIMRHRNILGG--GKEELQHLAKVIIFNMV 277
G++ + I R+R + K L L +++++V
Sbjct: 302 AGAWLMAICRYRGQMPETLSKRLLTQLGVFVLYSLV 337
>gi|335357178|ref|ZP_08549048.1| rhomboid family integral membrane protein [Lactobacillus animalis
KCTC 3501]
Length = 224
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 71/116 (61%), Gaps = 5/116 (4%)
Query: 137 LLAVNVLVYIAQF---ATQD--KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
L+AVN+LV+I TQ+ L+ WGAK N LI +G+ WRL T F+H + HL +N
Sbjct: 14 LIAVNLLVFIGMTLSGGTQNAVNLIAWGAKYNPLIIQGELWRLFTPMFIHIGLEHLALNL 73
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
+L +G +E++ G R+L +Y S + + +S+ N+ + GAS ++FGL G++
Sbjct: 74 LTLYFLGVQLEQLFGKWRFLALYLISGVGGNILSFALSNNISAGASTSLFGLFGAY 129
>gi|169829737|ref|YP_001699895.1| hypothetical protein Bsph_4306 [Lysinibacillus sphaericus C3-41]
gi|168994225|gb|ACA41765.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
Length = 167
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 158 WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
+G + N LI KG++WR+ ++ FLHA H+ N +SL GP +EKI G R++ +Y S
Sbjct: 4 YGIQANFLIQKGEWWRVFSAMFLHAGFMHMFFNTFSLYLFGPELEKIAGKARFITIYLVS 63
Query: 218 AIASSAMSYRFCNS--PAVGASGAIFGLVGSFAVFIMRHRNIL 258
I + +Y F +S ++GASGAIFG+ G+F + R +
Sbjct: 64 GIVGNMATYIFYDSSYASLGASGAIFGIFGAFGALVYYTRKTM 106
>gi|375009531|ref|YP_004983164.1| Rhomboid [Geobacillus thermoleovorans CCB_US3_UF5]
gi|359288380|gb|AEV20064.1| Rhomboid [Geobacillus thermoleovorans CCB_US3_UF5]
Length = 389
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 64/105 (60%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
D L+ +GAK N LI+ G++WRL T FLH HL+ N +L +G T+E++ G R+L
Sbjct: 209 DVLIHYGAKFNPLIEAGEWWRLLTPMFLHIGFLHLLTNTLALYYLGITVERLYGSLRFLF 268
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
+Y ++ + S+ F S + GASGAIFGL G+ F +R++
Sbjct: 269 IYVTAGFFGALASFLFTPSLSAGASGAIFGLFGALLYFGTVYRHL 313
>gi|17549744|ref|NP_523084.1| hypothetical protein RS04802 [Ralstonia solanacearum GMI1000]
gi|17431999|emb|CAD18676.1| probable membrane transmembrane protein [Ralstonia solanacearum
GMI1000]
Length = 569
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 12/156 (7%)
Query: 134 TNILLAVNVLVYIAQFA--------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T+ L+A+NVL ++A D L G + +G++WRL ++ FLHA +
Sbjct: 208 THALIALNVLAWLATLVLGGNPLQTPTDVLFNLGGNAAFEVQQGEWWRLLSATFLHAGVL 267
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA--VGASGAIFGL 243
HL VN L + G T+E+I GP YL +Y + + SA+S F A VGASGA+FG+
Sbjct: 268 HLAVNMIGLYAAGVTVERIYGPVAYLLIYLGAGLLGSALSLSFAAQHAIGVGASGAVFGV 327
Query: 244 VGSFAVFIMRHRNILGG--GKEELQHLAKVIIFNMV 277
G++ V I ++R + K L + +++++V
Sbjct: 328 AGAWLVAIRQYRGRMPETLSKRLLTQIGLFVLYSLV 363
>gi|56420981|ref|YP_148299.1| hypothetical protein GK2446 [Geobacillus kaustophilus HTA426]
gi|56380823|dbj|BAD76731.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
Length = 390
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 64/105 (60%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
D L+ +GAK N LI+ G++WRL T FLH HL+ N +L +G T+E++ G R+L
Sbjct: 210 DVLIHYGAKFNPLIEAGEWWRLLTPMFLHIGFLHLLTNTLALYYLGITVERLYGSLRFLF 269
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
+Y ++ + S+ F S + GASGAIFGL G+ F +R++
Sbjct: 270 IYVTAGFFGALASFLFTPSLSAGASGAIFGLFGALLYFGTVYRHL 314
>gi|239827720|ref|YP_002950344.1| rhomboid family protein [Geobacillus sp. WCH70]
gi|239808013|gb|ACS25078.1| Rhomboid family protein [Geobacillus sp. WCH70]
Length = 389
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 83/161 (51%), Gaps = 8/161 (4%)
Query: 102 FFNGGGTRKNSGHEGTSHLDTARTNLFIGRQ-WTNILLAVNVLVYIAQFATQDK-----L 155
FF +++ E + R G+ +T I +A+ VLV++ + L
Sbjct: 153 FFEAERLKQDILREAREQHERERRLFEYGKPVFTYIFIALQVLVFLLMEWSGGSTNPAVL 212
Query: 156 LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
+ +GAK N LI +G++WR T FLH HL++N ++L +G T+E++ G R+ +Y
Sbjct: 213 IQYGAKFNPLIQEGEWWRFFTPIFLHIGFLHLLMNTFALYYLGMTVERLYGSWRFFFIYL 272
Query: 216 SSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF--IMRH 254
+ + S+ F S + GASGAIFGL G+ F + RH
Sbjct: 273 IAGFFGTLGSFLFTTSLSAGASGAIFGLFGALLYFGTVYRH 313
>gi|395768820|ref|ZP_10449335.1| hypothetical protein Saci8_03541 [Streptomyces acidiscabies 84-104]
Length = 298
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 93/169 (55%), Gaps = 21/169 (12%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKL-----LLWGAKINSL-------IDKGQFWRLATSA 178
R T ILL + + ++AQ A D+ L+ A + +L + +GQ++RL TS
Sbjct: 83 RLVTKILLGICAVAFLAQQALGDEFTDRFDLIGRALMPALGWDQLQGVAEGQWYRLLTSM 142
Query: 179 FLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGA 236
FLH +I H++ N SL IG +E G RYL ++F S +A SA++Y N ++GA
Sbjct: 143 FLHGSIIHILSNALSLWWIGGPLEAALGRARYLALFFVSGLAGSALTYLVAEPNQASLGA 202
Query: 237 SGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
SGAIFG+ G+ AV + R R +++ + +++ N++ + ++ I
Sbjct: 203 SGAIFGVFGAMAVLMRRQRY-------DMRPMIAILVINLIITFGWSGI 244
>gi|398304447|ref|ZP_10508033.1| hypothetical protein BvalD_02972 [Bacillus vallismortis DV1-F-3]
Length = 507
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 73/131 (55%), Gaps = 5/131 (3%)
Query: 133 WTNILLAVNVLVYI-----AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T + +A+ VL++ + L+ +GAK NSLI G++WRL T LH I HL
Sbjct: 179 FTYLFIALQVLMFFLLEIKGGSTNTETLVAFGAKENSLIAAGEWWRLLTPIVLHIGIVHL 238
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
N +L S+G +E++ G R+L +Y ++ I S S+ F P+ GASGAIFG +G+
Sbjct: 239 AFNTLALWSVGTEVERMYGSGRFLLIYLAAGITGSIASFVFSPYPSAGASGAIFGCLGAL 298
Query: 248 AVFIMRHRNIL 258
+ +R +
Sbjct: 299 LYVALSNRKMF 309
>gi|261417690|ref|YP_003251372.1| rhomboid family protein [Geobacillus sp. Y412MC61]
gi|319767503|ref|YP_004133004.1| rhomboid family protein [Geobacillus sp. Y412MC52]
gi|261374147|gb|ACX76890.1| Rhomboid family protein [Geobacillus sp. Y412MC61]
gi|317112369|gb|ADU94861.1| Rhomboid family protein [Geobacillus sp. Y412MC52]
Length = 386
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 64/105 (60%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
D L+ +GAK N LI+ G++WRL T FLH HL+ N +L +G T+E++ G R+L
Sbjct: 206 DVLIHYGAKFNPLIEAGEWWRLLTPMFLHIGFLHLLTNTLALYYLGITVERLYGSLRFLF 265
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
+Y ++ + S+ F S + GASGAIFGL G+ F +R++
Sbjct: 266 IYVTAGFFGALASFLFTPSLSAGASGAIFGLFGALLYFGTVYRHL 310
>gi|345007980|ref|YP_004810334.1| rhomboid family protein [Streptomyces violaceusniger Tu 4113]
gi|344034329|gb|AEM80054.1| Rhomboid family protein [Streptomyces violaceusniger Tu 4113]
Length = 294
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 78/133 (58%), Gaps = 14/133 (10%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL----LWG-------AKINSLIDKGQFWRLATSAFLHA 182
T IL+A+N+ V++A + D+L+ L G A+I + +GQ+WRL TS FLH
Sbjct: 83 TKILVAINIAVWLAALSAGDRLVNDLDLVGRAYDPGAAQIVG-VAEGQWWRLVTSIFLHQ 141
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAI 240
+ H+ N SL IG +E G R++ +Y S + SA+SY N P++GASGAI
Sbjct: 142 QLIHIAFNMLSLWWIGGPLEAALGRVRFIVLYILSGLGGSALSYLLAAQNQPSLGASGAI 201
Query: 241 FGLVGSFAVFIMR 253
FGL+G+ AV + R
Sbjct: 202 FGLLGATAVLMRR 214
>gi|297529385|ref|YP_003670660.1| rhomboid family protein [Geobacillus sp. C56-T3]
gi|297252637|gb|ADI26083.1| Rhomboid family protein [Geobacillus sp. C56-T3]
Length = 386
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 64/105 (60%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
D L+ +GAK N LI+ G++WRL T FLH HL+ N +L +G T+E++ G R+L
Sbjct: 206 DVLIHYGAKFNPLIEAGEWWRLLTPMFLHIGFLHLLTNTLALYYLGITVERLYGSLRFLF 265
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
+Y ++ + S+ F S + GASGAIFGL G+ F +R++
Sbjct: 266 IYVTAGFFGALASFLFTPSLSAGASGAIFGLFGALLYFGTVYRHL 310
>gi|329938622|ref|ZP_08288018.1| integral membrane protein [Streptomyces griseoaurantiacus M045]
gi|329302113|gb|EGG46005.1| integral membrane protein [Streptomyces griseoaurantiacus M045]
Length = 303
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 92/176 (52%), Gaps = 24/176 (13%)
Query: 122 TARTNLFIGRQWTNILLAVNVLVYIAQFATQDKL-----LLWGAKINSL-----IDKGQF 171
TA NL T +L+ +N+ +++ Q + D LL A + +GQ+
Sbjct: 86 TADPNLV-----TKVLIGLNLALFLVQLSLGDDFTRRFELLGRASYTGFSPLEGVAEGQY 140
Query: 172 WRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--C 229
+RL T+ FLH AH++ N SL +G +EK G R+L +Y S +A SA+SY
Sbjct: 141 YRLLTAMFLHGGYAHIIFNMLSLWWLGAPLEKALGRARFLALYLVSGLAGSALSYLLAAA 200
Query: 230 NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
N P++GASGAIFGL G+ AV + R +++ + +++ N+V + ++ I
Sbjct: 201 NQPSLGASGAIFGLFGATAVLVRRL-------NYDMRPVIALLVINLVLTFGWSGI 249
>gi|300781971|ref|YP_003762262.1| hypothetical protein AMED_0036 [Amycolatopsis mediterranei U32]
gi|384145172|ref|YP_005527988.1| hypothetical protein RAM_00180 [Amycolatopsis mediterranei S699]
gi|399533854|ref|YP_006546515.1| hypothetical protein AMES_0034 [Amycolatopsis mediterranei S699]
gi|299791485|gb|ADJ41860.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
gi|340523326|gb|AEK38531.1| hypothetical protein RAM_00180 [Amycolatopsis mediterranei S699]
gi|398314624|gb|AFO73571.1| hypothetical protein AMES_0034 [Amycolatopsis mediterranei S699]
Length = 266
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 88/171 (51%), Gaps = 24/171 (14%)
Query: 106 GGTRKNSGHEGTSHLDTARTNLFIGRQ-----WTNILLAVNVLVYIAQFATQDKL----- 155
GG + H G + +F R T +LAVNVLV++ A L
Sbjct: 4 GGQEQRRQHRGYQEAGFGQRTVFGARLSRSVLVTQAILAVNVLVFLLTVAQAGSLNDNDL 63
Query: 156 -------LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPR 208
L+G ++ + G++WR+ T+ FLH H+ VN +SL +G ++E++CG
Sbjct: 64 SSAFQHGALYG---DATLGHGEWWRILTNGFLHYGPIHIAVNMFSLWMMGRSLEQVCGRG 120
Query: 209 RYLGVYFSSAIASSAMSYRFCNSPA----VGASGAIFGLVGSFAVFIMRHR 255
R+L +YF S + +SA F N VGASGA+FGL+G++AV +++ R
Sbjct: 121 RFLALYFVSMLGASASVLLFGNPGGYPGTVGASGALFGLMGAYAVTVLKLR 171
>gi|430805416|ref|ZP_19432531.1| intramembrane serine protease [Cupriavidus sp. HMR-1]
gi|429502334|gb|ELA00646.1| intramembrane serine protease [Cupriavidus sp. HMR-1]
Length = 533
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 72/132 (54%), Gaps = 10/132 (7%)
Query: 137 LLAVNVLVYIAQF--------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
++AVNVLV++ A L+ WG + +L GQ+WRL T+ FLH ++ HL
Sbjct: 178 VIAVNVLVWLIMLSRGAALDGAAPKMLIDWGGNLGALTQDGQWWRLLTATFLHGSLKHLA 237
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGS 246
N L +G +E+ G R +L +Y + + SA+S F S +VGASGA+FG+ G+
Sbjct: 238 ANMVVLYLLGKHVERFFGTRSFLLIYVGAGLLGSALSLYFAAQTSVSVGASGAVFGIGGA 297
Query: 247 FAVFIMRHRNIL 258
V + HR L
Sbjct: 298 LLVAALLHRREL 309
>gi|350266688|ref|YP_004877995.1| hypothetical protein GYO_2752 [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349599575|gb|AEP87363.1| YqgP [Bacillus subtilis subsp. spizizenii TU-B-10]
Length = 507
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 63/105 (60%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI G++WRL T LH I HL N +L S+G +E++ G R+L
Sbjct: 204 ETLVAFGAKENSLIAAGEWWRLLTPIVLHIGITHLAFNTLALWSVGTVVERMYGSGRFLL 263
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
+Y ++ I S S+ F P+ GASGAIFG +G+ + +R +
Sbjct: 264 IYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNRKM 308
>gi|116789343|gb|ABK25213.1| unknown [Picea sitchensis]
Length = 301
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 90/174 (51%), Gaps = 12/174 (6%)
Query: 135 NILLAVNVLVYIAQFATQDK---------LLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
N L A+N+ V++ + A+ K LL+GAKIN LI G++WRL T FLH+ +
Sbjct: 52 NTLAAINIAVFLFELASPVKSSDAGILSLPLLFGAKINELILNGEWWRLITPKFLHSGLL 111
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
H+ + ++L + GP ++ G + +YF + + MS+ VG +G + ++G
Sbjct: 112 HIAFSSWALLTFGPLVDTAYGSFAFCMIYFLGGVCGNLMSFFHTPDATVGGTGPVLAIIG 171
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANIVKIESRHTLTGETC 299
S+ +++ ++R L G+E +L + + V S A + + I+ L G C
Sbjct: 172 SWIIYLFQNREAL--GEEMADNLIQKVAVASVLSVALSYLTPIDDWTHL-GAAC 222
>gi|403669619|ref|ZP_10934810.1| hypothetical protein KJC8E_12316 [Kurthia sp. JC8E]
Length = 206
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 4/139 (2%)
Query: 137 LLAVNVLVYIAQFATQ--DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
L +N+ VY+ + + GA IN LI +G++WR+ T+ F+H H++ N + L
Sbjct: 21 FLLINIAVYLVGLVPSIGNWIFAKGAAINFLIAQGEYWRVVTAIFIHGGFMHVLSNMFWL 80
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFAVFIM 252
GP +E+I G R+ +Y + I + +Y + N +VGASGAIFG++G+F +
Sbjct: 81 YVFGPELERIAGKARFFTIYMLAGILGNVFTYIWQPLNYASVGASGAIFGILGAFLALVY 140
Query: 253 RHRNILGGGKEELQHLAKV 271
R I K+ + L +
Sbjct: 141 YTRKIFPQLKQMIVPLVVI 159
>gi|116495142|ref|YP_806876.1| membrane-associated serine protease [Lactobacillus casei ATCC 334]
gi|239632021|ref|ZP_04675052.1| membrane-associated serine protease [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|301066706|ref|YP_003788729.1| membrane-associated serine protease [Lactobacillus casei str.
Zhang]
gi|417980317|ref|ZP_12620997.1| GlpG family membrane protein [Lactobacillus casei 12A]
gi|417989935|ref|ZP_12630432.1| GlpG family membrane protein [Lactobacillus casei A2-362]
gi|417993182|ref|ZP_12633532.1| GlpG family membrane protein [Lactobacillus casei CRF28]
gi|417996528|ref|ZP_12636807.1| GlpG family membrane protein [Lactobacillus casei M36]
gi|417999394|ref|ZP_12639604.1| GlpG family membrane protein [Lactobacillus casei T71499]
gi|418002337|ref|ZP_12642457.1| GlpG family membrane protein [Lactobacillus casei UCD174]
gi|418008258|ref|ZP_12648126.1| GlpG family membrane protein [Lactobacillus casei UW4]
gi|418013147|ref|ZP_12652800.1| GlpG family membrane protein [Lactobacillus casei Lpc-37]
gi|116105292|gb|ABJ70434.1| Membrane-associated serine protease [Lactobacillus casei ATCC 334]
gi|239526486|gb|EEQ65487.1| membrane-associated serine protease [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|300439113|gb|ADK18879.1| Membrane-associated serine protease [Lactobacillus casei str.
Zhang]
gi|410524640|gb|EKP99547.1| GlpG family membrane protein [Lactobacillus casei 12A]
gi|410532094|gb|EKQ06805.1| GlpG family membrane protein [Lactobacillus casei CRF28]
gi|410535374|gb|EKQ09999.1| GlpG family membrane protein [Lactobacillus casei M36]
gi|410536930|gb|EKQ11516.1| GlpG family membrane protein [Lactobacillus casei A2-362]
gi|410539414|gb|EKQ13947.1| GlpG family membrane protein [Lactobacillus casei T71499]
gi|410544317|gb|EKQ18647.1| GlpG family membrane protein [Lactobacillus casei UCD174]
gi|410547202|gb|EKQ21440.1| GlpG family membrane protein [Lactobacillus casei UW4]
gi|410556094|gb|EKQ30016.1| GlpG family membrane protein [Lactobacillus casei Lpc-37]
Length = 227
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 72/119 (60%), Gaps = 6/119 (5%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +LAV +LV++ + L+ +GA++N LI GQ+WRL T F+H + H++
Sbjct: 17 TNAILAVTILVFLLETFSGGSTNNSVLVFYGARLNPLILYGQWWRLMTPVFVHIGLMHIL 76
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGS 246
VN +SL +G E++ G R+ +YF S A + S+ F N+ A GAS AIFGL+G+
Sbjct: 77 VNGFSLYYLGQMTEQLFGHWRFFLLYFISGFAGNVASFAFSPNTLAAGASTAIFGLLGA 135
>gi|149919219|ref|ZP_01907702.1| Rhomboid-like protein [Plesiocystis pacifica SIR-1]
gi|149819933|gb|EDM79355.1| Rhomboid-like protein [Plesiocystis pacifica SIR-1]
Length = 383
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 72/132 (54%), Gaps = 9/132 (6%)
Query: 136 ILLAVNVLVYIAQFA--------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+LL +NV V++ + ++L+ WGA GQ+WRL T+ FLH + HL
Sbjct: 55 VLLGLNVAVWLLMVGMGVDAFEPSSEELVDWGANFGPKTASGQWWRLLTATFLHGGLIHL 114
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLVGS 246
N Y L IG E+I YL +YF S + +SA S + +P+VGASGA+ G+ G+
Sbjct: 115 GFNIYFLWVIGRITEQIFRAPAYLVIYFGSGLCASAASLAWNPIAPSVGASGALLGVFGA 174
Query: 247 FAVFIMRHRNIL 258
F F +R R +L
Sbjct: 175 FLGFTLRRREVL 186
>gi|417987040|ref|ZP_12627602.1| GlpG family membrane protein [Lactobacillus casei 32G]
gi|418011095|ref|ZP_12650861.1| GlpG family membrane protein [Lactobacillus casei Lc-10]
gi|410524104|gb|EKP99021.1| GlpG family membrane protein [Lactobacillus casei 32G]
gi|410552732|gb|EKQ26746.1| GlpG family membrane protein [Lactobacillus casei Lc-10]
Length = 227
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 72/119 (60%), Gaps = 6/119 (5%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +LAV +LV++ + L+ +GA++N LI GQ+WRL T F+H + H++
Sbjct: 17 TNAILAVTILVFLLETFSGGSTNNSVLVFYGARLNPLILYGQWWRLITPVFVHIGLMHIL 76
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGS 246
VN +SL +G E++ G R+ +YF S A + S+ F N+ A GAS AIFGL+G+
Sbjct: 77 VNGFSLYYLGQMTEQLFGHWRFFLLYFISGFAGNVASFAFSPNTLAAGASTAIFGLLGA 135
>gi|448238728|ref|YP_007402786.1| rhomboid family protein [Geobacillus sp. GHH01]
gi|445207570|gb|AGE23035.1| rhomboid family protein [Geobacillus sp. GHH01]
Length = 389
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 64/105 (60%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
D L+ +GAK N LI+ G++WRL T FLH HL+ N +L +G T+E++ G R+L
Sbjct: 209 DVLIHYGAKFNPLIEAGEWWRLLTPMFLHIGFLHLLTNTLALYYLGITVERLYGSFRFLF 268
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
+Y ++ + S+ F S + GASGAIFGL G+ F +R++
Sbjct: 269 IYVTAGFFGALASFLFTPSLSAGASGAIFGLFGALLYFGTVYRHL 313
>gi|418476663|ref|ZP_13045815.1| hypothetical protein SMCF_8893 [Streptomyces coelicoflavus ZG0656]
gi|371542672|gb|EHN71698.1| hypothetical protein SMCF_8893 [Streptomyces coelicoflavus ZG0656]
Length = 297
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 89/167 (53%), Gaps = 19/167 (11%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKL-----LLWGAKIN-----SLIDKGQFWRLATSAFL 180
R T +L+ VN+ +++ Q + D+ LL A I + +GQ++RL T+ FL
Sbjct: 84 RLVTKVLIGVNLALFLVQLSVGDRFTQRFELLGQAYITFPGPVEGVAEGQWYRLLTAMFL 143
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASG 238
H H++ N SL +G +E G RYL +YF S +A SA++Y N P++GASG
Sbjct: 144 HTGYMHILFNMLSLWWLGGPLEGALGRARYLALYFCSGLAGSALTYLIAEPNQPSLGASG 203
Query: 239 AIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
AIFGL G+ A + R +++ + ++ N+V + +ANI
Sbjct: 204 AIFGLFGATATLVRRL-------NADMRPVVILLAINLVFTFTWANI 243
>gi|138896022|ref|YP_001126475.1| hypothetical protein GTNG_2385 [Geobacillus thermodenitrificans
NG80-2]
gi|134267535|gb|ABO67730.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
NG80-2]
Length = 386
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 77/129 (59%), Gaps = 5/129 (3%)
Query: 134 TNILLAVNVLVYI----AQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +L+ V V++++ + +T +L+ +GAK N LI+ G++WR T FLH HL+
Sbjct: 182 TRLLIVVQVVMFLILEWSGGSTDPSVLIRYGAKFNPLIEMGEWWRFLTPMFLHIGFLHLL 241
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N ++L +G T+E++ G R+L +Y ++ + S+ F S + GASGAIFGL G+
Sbjct: 242 TNTFALYYLGITVERLYGSLRFLLIYTTAGFFGTLASFLFTPSISAGASGAIFGLFGALL 301
Query: 249 VFIMRHRNI 257
F +R++
Sbjct: 302 YFGTVYRHL 310
>gi|149181994|ref|ZP_01860480.1| hypothetical protein BSG1_06322 [Bacillus sp. SG-1]
gi|148850259|gb|EDL64423.1| hypothetical protein BSG1_06322 [Bacillus sp. SG-1]
Length = 485
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 76/131 (58%), Gaps = 5/131 (3%)
Query: 133 WTNILLAVNVLVY-IAQFA--TQD--KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T I +A+ +LV+ + + A TQD L+ +GAK N LI G++WR T +H H+
Sbjct: 158 FTYIFIALQLLVFFVMEMAGGTQDTENLIRFGAKYNPLIVDGEWWRFFTPIVIHIGFLHM 217
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
++N ++L +GP +E+I G R+L +Y + + + S+ F +S + GASGAIFG G+
Sbjct: 218 LMNTFALYFLGPAVERIFGSARFLFIYLFAGFSGTLASFVFNDSLSAGASGAIFGCFGAL 277
Query: 248 AVFIMRHRNIL 258
F H I
Sbjct: 278 LYFGTAHPKIF 288
>gi|365157863|ref|ZP_09354108.1| hypothetical protein HMPREF1015_00268 [Bacillus smithii 7_3_47FAA]
gi|363622533|gb|EHL73692.1| hypothetical protein HMPREF1015_00268 [Bacillus smithii 7_3_47FAA]
Length = 397
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 75/135 (55%), Gaps = 6/135 (4%)
Query: 125 TNLFIGRQWTNILLAVNVLVYIAQFATQ-DKLLLWGAKINSLIDKGQFWRLATSAFLHAN 183
T LFI Q +AV +L+ I +T D L+ +GAK N LI G++WR T FLH
Sbjct: 186 TYLFIAVQ-----VAVFLLLEINGGSTNTDTLIRFGAKFNPLILDGEWWRFFTPIFLHIG 240
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGL 243
+ HL++N +L +G +EKI G R+L +Y S S S+ F + + GASGAIFG
Sbjct: 241 VLHLLMNTMALYYLGTMVEKIFGRWRFLWIYLFSGFLGSVASFVFTPNLSAGASGAIFGC 300
Query: 244 VGSFAVFIMRHRNIL 258
G+ F +R++
Sbjct: 301 FGALLFFGFVNRSLF 315
>gi|196248915|ref|ZP_03147615.1| Rhomboid family protein [Geobacillus sp. G11MC16]
gi|196211791|gb|EDY06550.1| Rhomboid family protein [Geobacillus sp. G11MC16]
Length = 390
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 77/129 (59%), Gaps = 5/129 (3%)
Query: 134 TNILLAVNVLVYI----AQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +L+ V V++++ + +T +L+ +GAK N LI+ G++WR T FLH HL+
Sbjct: 186 TRLLIVVQVVMFLILEWSGGSTDPSVLIRYGAKFNPLIEMGEWWRFLTPMFLHIGFLHLL 245
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N ++L +G T+E++ G R+L +Y ++ + S+ F S + GASGAIFGL G+
Sbjct: 246 TNTFALYYLGITVERLYGSLRFLLIYATAGFFGTLASFLFTPSISAGASGAIFGLFGALL 305
Query: 249 VFIMRHRNI 257
F +R++
Sbjct: 306 YFGTVYRHL 314
>gi|441142545|ref|ZP_20962413.1| hypothetical protein SRIM_00110 [Streptomyces rimosus subsp.
rimosus ATCC 10970]
gi|440622490|gb|ELQ85269.1| hypothetical protein SRIM_00110 [Streptomyces rimosus subsp.
rimosus ATCC 10970]
Length = 303
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 91/167 (54%), Gaps = 19/167 (11%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKL-----LLWGAKINSLID-----KGQFWRLATSAFL 180
R T ILL +NV V+IA A D L L+ GA + +G+++RL T+ FL
Sbjct: 89 RLVTKILLGINVAVFIAVLAVGDGLVQDLELIGGAFTREDLQFIGVAEGEWYRLLTAVFL 148
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASG 238
H H++ N SL +GP +E G R+L +Y S + SA+SY N P++GASG
Sbjct: 149 HQAPMHIIFNMLSLWWLGPPLEAAFGRVRFLALYLLSGLGGSALSYLLAAQNQPSLGASG 208
Query: 239 AIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
AIFGL+G+ V +MR N +++ + ++ N+V + A+ +I
Sbjct: 209 AIFGLLGA-TVILMRRLNY------DMRPVLILLALNLVFTFAWPDI 248
>gi|52081023|ref|YP_079814.1| integral membrane protein GluP [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|319645019|ref|ZP_07999252.1| YqgP protein [Bacillus sp. BT1B_CT2]
gi|404489905|ref|YP_006714011.1| rhomboid protease YggP [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52004234|gb|AAU24176.1| TPR motif integral membrane protein GluP [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|52348902|gb|AAU41536.1| rhomboid protease YggP [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|317392828|gb|EFV73622.1| YqgP protein [Bacillus sp. BT1B_CT2]
Length = 512
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 62/104 (59%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSL+ G++WRL T LH + HLM N ++L S+G E++ G R+L
Sbjct: 209 ETLVRFGAKENSLLLAGEWWRLVTPIVLHIGLVHLMFNTFALLSVGAAAERVFGSFRFLV 268
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRN 256
+Y S+ I S S+ F P+ GASGAIFG +G+ +R
Sbjct: 269 IYISAGIFGSIGSFLFSPYPSAGASGAIFGCLGALLYLAFSNRK 312
>gi|423682997|ref|ZP_17657836.1| integral membrane protein GluP [Bacillus licheniformis WX-02]
gi|383439771|gb|EID47546.1| integral membrane protein GluP [Bacillus licheniformis WX-02]
Length = 512
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 62/104 (59%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSL+ G++WRL T LH + HLM N ++L S+G E++ G R+L
Sbjct: 209 ETLVRFGAKENSLLLAGEWWRLVTPIVLHIGLVHLMFNTFALLSVGAAAERVFGSFRFLV 268
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRN 256
+Y S+ I S S+ F P+ GASGAIFG +G+ +R
Sbjct: 269 IYISAGIFGSIGSFLFSPYPSAGASGAIFGCLGALLYLAFSNRK 312
>gi|374995763|ref|YP_004971262.1| hypothetical protein Desor_3244 [Desulfosporosinus orientis DSM
765]
gi|357214129|gb|AET68747.1| putative membrane protein [Desulfosporosinus orientis DSM 765]
Length = 316
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 71/122 (58%), Gaps = 5/122 (4%)
Query: 137 LLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
L+ +N++V+ ++ L+ +GAK+NSLI G+ WR TS F+H HL N
Sbjct: 139 LIGINLVVFFLMTLAGGSQNREVLIAFGAKVNSLILAGEVWRFFTSMFIHIGYLHLGFNL 198
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFI 251
Y+L +GP EK+ G R+L +Y S + S S+ F + + GASGAIFGL+G+ +
Sbjct: 199 YALWVLGPFTEKLFGHWRFLVIYLLSGLGGSIASFFFTSGLSAGASGAIFGLLGALLYYS 258
Query: 252 MR 253
++
Sbjct: 259 LK 260
>gi|347755936|ref|YP_004863500.1| hypothetical protein [Candidatus Chloracidobacterium thermophilum
B]
gi|347588454|gb|AEP12984.1| putative membrane protein [Candidatus Chloracidobacterium
thermophilum B]
Length = 424
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 72/127 (56%), Gaps = 7/127 (5%)
Query: 136 ILLAVNVLVYI-AQFA----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
+L+ +NV +++ FA D L +GA LID+G+ WRL FLH + HL+ N
Sbjct: 63 VLIGINVAMFLLTAFAGGSTDPDVLTAFGACNRKLIDQGEVWRLVVPMFLHIGMIHLLAN 122
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSFA 248
Y+L +GP +E + G R+ +Y S I SY F + ++ GASGA+FG+ G+
Sbjct: 123 MYALWVLGPQLESLYGSARFTILYLLSGIGGFVASYFFAHPESIGAGASGALFGMFGALL 182
Query: 249 VFIMRHR 255
VF+ ++R
Sbjct: 183 VFVYKYR 189
>gi|56963491|ref|YP_175222.1| hypothetical protein ABC1726 [Bacillus clausii KSM-K16]
gi|56909734|dbj|BAD64261.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
Length = 523
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 79/141 (56%), Gaps = 6/141 (4%)
Query: 124 RTNLFIGRQWTNILLAVNVLVYIAQFATQ------DKLLLWGAKINSLIDKGQFWRLATS 177
R LF G+ L +++L+ + + L+ +GAK N LI +G++WRL ++
Sbjct: 174 RQTLFFGKPRVIYALLISILIMFSVLEANGGSTNIETLIDFGAKYNPLIVEGEWWRLFSA 233
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGAS 237
FLH HL +N +L +G +E++ G R+L +YF + + SA+S+ F +S + GAS
Sbjct: 234 MFLHIGFFHLFMNGMALYFLGSAVEQLFGSIRFLVIYFMAGLFGSAVSFAFTDSLSAGAS 293
Query: 238 GAIFGLVGSFAVFIMRHRNIL 258
GA+FG G+ F ++ ++
Sbjct: 294 GALFGCFGALLYFGIKQPSLF 314
>gi|365851709|ref|ZP_09392132.1| peptidase, S54 family [Lactobacillus parafarraginis F0439]
gi|363716222|gb|EHL99633.1| peptidase, S54 family [Lactobacillus parafarraginis F0439]
Length = 211
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 70/116 (60%), Gaps = 5/116 (4%)
Query: 137 LLAVNVLVY-IAQFATQDK----LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
LL + V+VY I F+ + LL +GAK N LI G++WRL + F+H H+++N
Sbjct: 5 LLGIMVIVYVIMTFSGGTENTTTLLTFGAKFNPLIRAGEYWRLVSPIFIHIGFTHILMNG 64
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
+L IG +E + G R+LG++ +S I + S+ F +S + GAS AIFGL G+F
Sbjct: 65 ITLYFIGQYVEMLFGHWRFLGIFLTSGIVGNLASFAFSDSLSAGASTAIFGLFGAF 120
>gi|227534843|ref|ZP_03964892.1| S54 family peptidase [Lactobacillus paracasei subsp. paracasei ATCC
25302]
gi|227187599|gb|EEI67666.1| S54 family peptidase [Lactobacillus paracasei subsp. paracasei ATCC
25302]
Length = 282
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 72/119 (60%), Gaps = 6/119 (5%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +LAV +LV++ + L+ +GA++N LI GQ+WRL T F+H + H++
Sbjct: 72 TNAILAVTILVFLLETFSGGSTNNSVLVFYGARLNPLILYGQWWRLMTPVFVHIGLMHIL 131
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGS 246
VN +SL +G E++ G R+ +YF S A + S+ F N+ A GAS AIFGL+G+
Sbjct: 132 VNGFSLYYLGQMTEQLFGHWRFFLLYFISGFAGNVASFAFSPNTLAAGASTAIFGLLGA 190
>gi|94312789|ref|YP_585998.1| intramembrane serine protease [Cupriavidus metallidurans CH34]
gi|93356641|gb|ABF10729.1| putative intramembrane serine protease [Cupriavidus metallidurans
CH34]
Length = 554
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 72/132 (54%), Gaps = 10/132 (7%)
Query: 137 LLAVNVLVYIAQF--------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
++AVNVL+++ A L+ WG + +L GQ+WRL T+ FLH ++ HL
Sbjct: 199 MIAVNVLIWLIMLSRGAALDGAAPKMLIDWGGNLGALTQDGQWWRLLTATFLHGSLKHLA 258
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGS 246
N L +G +E+ G R +L +Y + + SA+S F S +VGASGA+FG+ G+
Sbjct: 259 ANMVVLYLLGTHVERFFGTRSFLLIYVGAGLLGSALSLYFAAQASVSVGASGAVFGIGGA 318
Query: 247 FAVFIMRHRNIL 258
V + HR L
Sbjct: 319 LLVAALLHRREL 330
>gi|389818133|ref|ZP_10208574.1| hypothetical protein A1A1_11051 [Planococcus antarcticus DSM 14505]
gi|388464065|gb|EIM06401.1| hypothetical protein A1A1_11051 [Planococcus antarcticus DSM 14505]
Length = 202
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 68/119 (57%), Gaps = 4/119 (3%)
Query: 137 LLAVNVLVYIAQFAT--QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
L+A+N+LVY + D L +G N I +GQ+WR T FLH + HL+ N +SL
Sbjct: 21 LIALNLLVYALTWLPLLGDWLYFYGVGSNFYIAEGQWWRFFTPIFLHGGLMHLLFNMFSL 80
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFAVFI 251
GP +E++ G R+ +Y S+ + +SA +Y + VGASGAIFG+ G+F +
Sbjct: 81 FLFGPELERLTGKVRFTTIYLSAGLFASAATYFLQPLDYAHVGASGAIFGVFGAFGALV 139
>gi|302782513|ref|XP_002973030.1| hypothetical protein SELMODRAFT_413432 [Selaginella moellendorffii]
gi|300159631|gb|EFJ26251.1| hypothetical protein SELMODRAFT_413432 [Selaginella moellendorffii]
Length = 432
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 72/130 (55%), Gaps = 7/130 (5%)
Query: 134 TNILLAVNVLVYIAQFAT-------QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
+ ++ +N+ VYI AT D L GAK+N LI G++WRL T FLH+ + H
Sbjct: 227 VSTIVGINIGVYIFGLATTQQTENGMDLAFLQGAKVNDLIVAGEWWRLITPTFLHSGLLH 286
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
L ++C++ S GP +E + G + +Y + S+ + P VG +GA+F ++ S
Sbjct: 287 LFLSCWATISFGPLVESLYGSIGLVLIYLLGGAMGNVASFLQTSQPTVGGTGAVFAMICS 346
Query: 247 FAVFIMRHRN 256
+ +F+++++
Sbjct: 347 WIIFLVKNKE 356
>gi|443626016|ref|ZP_21110448.1| putative membrane protein [Streptomyces viridochromogenes Tue57]
gi|443340440|gb|ELS54650.1| putative membrane protein [Streptomyces viridochromogenes Tue57]
Length = 313
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 90/167 (53%), Gaps = 19/167 (11%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKL-----LLWGAKINSLID-----KGQFWRLATSAFL 180
R T +L+ + + V++AQ + D L+ A + L D +GQ++RL TS FL
Sbjct: 100 RLVTKVLIGICLAVFLAQLSMGDPFTDRFDLMGRAYVPELGDVEGVAEGQWYRLLTSMFL 159
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASG 238
H + H++ N SL IG +E G RY+ +Y S +A SA++Y N P++GASG
Sbjct: 160 HGSYIHILFNMLSLWWIGGPLEAALGRVRYIALYLVSGLAGSALTYLIAAANQPSLGASG 219
Query: 239 AIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
AIFGL G+ AV + R + +++ + +++ N++ + A I
Sbjct: 220 AIFGLFGATAVLMRRL-------QYDMRPVIALLVINLIFTFGLAQI 259
>gi|440705184|ref|ZP_20885986.1| peptidase, S54 family [Streptomyces turgidiscabies Car8]
gi|440273071|gb|ELP61867.1| peptidase, S54 family [Streptomyces turgidiscabies Car8]
Length = 298
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 98/190 (51%), Gaps = 27/190 (14%)
Query: 116 GTSHLDTARTNLFIG--------RQWTNILLAVNVLVYIAQFATQDKL-----LLWGAKI 162
GT H +A T I R T IL+ +NV +Y+ Q + D L+ A
Sbjct: 62 GTGHAPSATTPRTIAGGTIAADPRLLTKILIGLNVALYLLQLSIGDDFTQRFELVGRASY 121
Query: 163 NSL-----IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
L + +GQ++RL TS FLH ++ H++ N SL +G +E G RYL +Y S
Sbjct: 122 EYLGPVEGVAEGQWYRLLTSMFLHGSLMHIVFNMLSLWWLGGPLEAALGRARYLALYLVS 181
Query: 218 AIASSAMSYRF--CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFN 275
+A SA++Y +P++GASGAIFGL G+ AV +MR N +++ + +++ N
Sbjct: 182 GLAGSALTYLLEAPTTPSLGASGAIFGLFGATAV-LMRRLNY------DMRPIIALLVIN 234
Query: 276 MVCSAAFANI 285
++ + NI
Sbjct: 235 LLFTFGPLNI 244
>gi|317128371|ref|YP_004094653.1| Rhomboid protease [Bacillus cellulosilyticus DSM 2522]
gi|315473319|gb|ADU29922.1| Rhomboid protease [Bacillus cellulosilyticus DSM 2522]
Length = 524
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 82/147 (55%), Gaps = 6/147 (4%)
Query: 118 SHLDTARTNLFIGRQW-TNILLAVNVLVY-IAQF----ATQDKLLLWGAKINSLIDKGQF 171
+ ++ R F G+ T ILLA +++Y I ++ + + L+ +GAK N LI +G++
Sbjct: 173 NQVEKDRKVFFYGKPIVTFILLATILIMYAIVEYNGSSMSTETLISFGAKFNPLILQGEW 232
Query: 172 WRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS 231
WR ++ FLH HLM+N +L +G +E+I G R+L +Y + + S S+
Sbjct: 233 WRFFSAMFLHIGFFHLMMNSLALFYLGSAVERIYGTGRFLIIYLIAGLVGSIASFALNEQ 292
Query: 232 PAVGASGAIFGLVGSFAVFIMRHRNIL 258
+ GASGAIFG G+ F ++H+ +
Sbjct: 293 VSAGASGAIFGCFGALLYFGIKHKRLF 319
>gi|302805494|ref|XP_002984498.1| hypothetical protein SELMODRAFT_445901 [Selaginella moellendorffii]
gi|300147886|gb|EFJ14548.1| hypothetical protein SELMODRAFT_445901 [Selaginella moellendorffii]
Length = 459
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 71/127 (55%), Gaps = 7/127 (5%)
Query: 137 LLAVNVLVYIAQFAT-------QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
++ +N+ VYI AT D L GAK+N LI G++WRL T FLH+ + HL +
Sbjct: 230 IVGINIGVYIFGLATTQQTENGMDLAFLQGAKVNDLIVAGEWWRLITPTFLHSGLLHLFL 289
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAV 249
+C++ S GP +E + G + +Y + S+ + P VG +GA+F ++ S+ +
Sbjct: 290 SCWATISFGPLVESLYGSIGLVLIYLLGGAMGNVASFLQTSQPTVGGTGAVFAMICSWII 349
Query: 250 FIMRHRN 256
F+++++
Sbjct: 350 FLVKNKE 356
>gi|440784052|ref|ZP_20961473.1| hypothetical protein F502_15090 [Clostridium pasteurianum DSM 525]
gi|440219088|gb|ELP58303.1| hypothetical protein F502_15090 [Clostridium pasteurianum DSM 525]
Length = 325
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 75/130 (57%), Gaps = 10/130 (7%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL--------LWGAKINSLIDKGQFWRLATSAFLHANIA 185
T I++ +N+ VY+ L + GAK N LI+ G+++RL T FLH+ I
Sbjct: 141 TYIIIGINIAVYLLSGVLSRNLFNIDINVLDILGAKDNYLINNGEYYRLFTCMFLHSGIL 200
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
H+ N Y+L SIG E I G ++Y+ +Y S I +S SY F N +VGASGAIFG++G
Sbjct: 201 HIASNMYALYSIGGLAESIYGRKKYIIIYILSGIIASTASYVFSNGISVGASGAIFGVLG 260
Query: 246 SFAVFIMRHR 255
V ++ H+
Sbjct: 261 --GVLVISHK 268
>gi|191638648|ref|YP_001987814.1| S54 family peptidase [Lactobacillus casei BL23]
gi|385820364|ref|YP_005856751.1| substrate carrier family protein [Lactobacillus casei LC2W]
gi|418005386|ref|ZP_12645379.1| GlpG family membrane protein [Lactobacillus casei UW1]
gi|190712950|emb|CAQ66956.1| S54 family peptidase [Lactobacillus casei BL23]
gi|327382691|gb|AEA54167.1| substrate carrier family protein [Lactobacillus casei LC2W]
gi|410546783|gb|EKQ21027.1| GlpG family membrane protein [Lactobacillus casei UW1]
Length = 227
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 71/119 (59%), Gaps = 6/119 (5%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +L V +LV++ + L+ +GA++N LI GQ+WRL T F+H + H++
Sbjct: 17 TNAILVVTILVFLLETFSGGSTNNSVLVFYGARLNPLILYGQWWRLMTPVFVHIGLMHIL 76
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGS 246
VN +SL +G E++ G R+ +YF S A + S+ F N+ A GAS AIFGL+G+
Sbjct: 77 VNGFSLYYLGQMTEQLFGHWRFFLLYFISGFAGNVASFAFSPNTLAAGASTAIFGLLGA 135
>gi|398784354|ref|ZP_10547618.1| hypothetical protein SU9_14461 [Streptomyces auratus AGR0001]
gi|396995277|gb|EJJ06295.1| hypothetical protein SU9_14461 [Streptomyces auratus AGR0001]
Length = 303
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 77/143 (53%), Gaps = 21/143 (14%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSL----------------IDKGQFWRL 174
R T ILL +NV V++A AT L +N L + +G+++RL
Sbjct: 86 RLITKILLGLNVAVFVAVMATGGAL---SPLVNRLDLVGLAAEPGGYHLVGVAEGEWYRL 142
Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSP 232
T+ FLH +AH+ N SL +GP +E G R++ +Y + + SA+SY N P
Sbjct: 143 LTAMFLHQQVAHIAFNMLSLWWLGPPLEAALGRARFIALYLLAGLGGSALSYFLAAQNQP 202
Query: 233 AVGASGAIFGLVGSFAVFIMRHR 255
++GASGAIFGL+G+ AV + R R
Sbjct: 203 SLGASGAIFGLLGATAVLLRRLR 225
>gi|389571781|ref|ZP_10161869.1| peptidase [Bacillus sp. M 2-6]
gi|388428267|gb|EIL86064.1| peptidase [Bacillus sp. M 2-6]
Length = 512
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 75/133 (56%), Gaps = 11/133 (8%)
Query: 133 WTNILLAVNVLVYI--------AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
+T +L+AV V++++ AT L +GAK N LI +G++WR T FLH +
Sbjct: 184 FTYMLIAVQVVMFLLLELSGGSTNTAT---LTAFGAKNNVLILEGEWWRFVTPMFLHIGL 240
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
HL+ N ++L S+G +E+I G R+L +Y S I S S+ F + GASGAIFG +
Sbjct: 241 THLLFNTFALWSVGAAVERIYGSGRFLLIYLISGIFGSIASFVFNTAIVAGASGAIFGCL 300
Query: 245 GSFAVFIMRHRNI 257
G+ + +R +
Sbjct: 301 GALLYLAISNRKL 313
>gi|116333635|ref|YP_795162.1| membrane-associated serine protease [Lactobacillus brevis ATCC 367]
gi|116098982|gb|ABJ64131.1| Membrane-associated serine protease [Lactobacillus brevis ATCC 367]
Length = 226
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 69/119 (57%), Gaps = 5/119 (4%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+ + VLV++A + + L+ +GAK+N LI +GQ+WRL T FLH H+
Sbjct: 18 TTGLVVIMVLVFVAMTLAGGSTSLNVLVAFGAKVNPLIQQGQWWRLITPMFLHIGFTHIF 77
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
+N +L +G +E G R+L ++ + I + S+ F NS + GAS AIFGL G+F
Sbjct: 78 LNMVTLYFVGTQLEAAFGHARFLIIFLVAGIGGNVASFCFLNSLSAGASTAIFGLFGAF 136
>gi|212638734|ref|YP_002315254.1| serine protease of Rhomboid family, contains TPR repeats
[Anoxybacillus flavithermus WK1]
gi|212560214|gb|ACJ33269.1| Serine protease of Rhomboid family, contains TPR repeats
[Anoxybacillus flavithermus WK1]
Length = 517
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 57/96 (59%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GAK N LI +G++WR T LH HL +N ++L +GP +EK+ G R+L +Y
Sbjct: 217 LIQYGAKFNPLILQGEWWRFFTPIVLHIGFVHLFMNTFALYYLGPLVEKLYGSLRFLFIY 276
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
+ A S S+ F S + GASGAIFG G+ F
Sbjct: 277 LFAGFAGSLASFLFSPSVSAGASGAIFGCFGALLYF 312
>gi|302543949|ref|ZP_07296291.1| rhomboid family protein [Streptomyces hygroscopicus ATCC 53653]
gi|302461567|gb|EFL24660.1| rhomboid family protein [Streptomyces himastatinicus ATCC 53653]
Length = 292
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 89/164 (54%), Gaps = 19/164 (11%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLID----------KGQFWRLATSAFLHAN 183
T IL+ +N+ V++A T D+L+ + D +GQ++RL T+AFLH
Sbjct: 81 TKILIGLNIAVWLAVLGTGDRLVDGFDLVGRAYDPGTADIVGVAEGQWYRLLTAAFLHQQ 140
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIF 241
H+ N SL IG +E G RYL +Y S + SA+SY N P++GASGA+F
Sbjct: 141 PLHIAFNMLSLWWIGAPLEAALGRARYLTLYLLSGLGGSALSYLLAAQNQPSLGASGAVF 200
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
GL+G+ AV +MR N +++ + +++ N++ + ++ I
Sbjct: 201 GLLGATAV-LMRRLNY------DMRPVIALLVLNLIFTFGWSGI 237
>gi|160886529|ref|ZP_02067532.1| hypothetical protein BACOVA_04540 [Bacteroides ovatus ATCC 8483]
gi|423289697|ref|ZP_17268547.1| hypothetical protein HMPREF1069_03590 [Bacteroides ovatus
CL02T12C04]
gi|156108414|gb|EDO10159.1| peptidase, S54 family [Bacteroides ovatus ATCC 8483]
gi|392667408|gb|EIY60918.1| hypothetical protein HMPREF1069_03590 [Bacteroides ovatus
CL02T12C04]
Length = 592
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 79/151 (52%), Gaps = 14/151 (9%)
Query: 134 TNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +N+LV+I A+ LL WGA L G +WR T F+H
Sbjct: 164 TPILIDINILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRTVTCNFIHIGAF 223
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLV 244
HL++N Y+ +G +E++ G RR Y + + S+A S Y + + GASG+IFGL
Sbjct: 224 HLLMNMYAFMYVGLLLEELIGGRRMFVSYLLTGLCSAAFSLYMHGETISAGASGSIFGLY 283
Query: 245 GSFAVFIMRHRNILGGGKEELQH-LAKVIIF 274
G F F++ HR KE+ + LA ++IF
Sbjct: 284 GIFLAFLLFHRI----AKEQRKALLASILIF 310
>gi|403070966|ref|ZP_10912298.1| hypothetical protein ONdio_15397 [Oceanobacillus sp. Ndiop]
Length = 253
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 86/158 (54%), Gaps = 8/158 (5%)
Query: 134 TNILLAVN-VLVYIAQF---ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
++L+ +N +L ++ F ++ WG N ++ G++WRL T FLH ++ H +
Sbjct: 19 VSVLVIINLILWFVVNFLGLPIGREIYYWGVGSNFMVAAGEYWRLVTPIFLHGDLMHALF 78
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSF 247
N +SL GP +E++ G ++L +F + I ++A +Y F N +GASGAIFGL G +
Sbjct: 79 NSFSLVLFGPALEQMLGKSKFLIAFFGAGIIANAATYLFAPLNYTHLGASGAIFGLFGIY 138
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
++ ++++ Q + ++I ++V + NI
Sbjct: 139 TFMVLFRKHLIDYSSS--QMITTILIISLVMTFLRNNI 174
>gi|366085766|ref|ZP_09452251.1| membrane-associated serine protease [Lactobacillus zeae KCTC 3804]
Length = 229
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 73/119 (61%), Gaps = 6/119 (5%)
Query: 134 TNILLAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +LAV +LV+I + + + L+ +GA+ N LI GQ+WRL T F+H + H++
Sbjct: 17 TNGILAVTILVFILETLSGGSTNTEVLIAYGARANPLILYGQWWRLITPVFVHIGLTHIL 76
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGS 246
+N +SL +G E++ G R+ +YF S A + S+ F N+ A GAS AIFGL+G+
Sbjct: 77 MNGFSLYFLGEMTERLFGHWRFFLLYFISGFAGNVASFAFSPNTLAAGASTAIFGLLGA 135
>gi|452975048|gb|EME74867.1| rhomboid protease YggP [Bacillus sonorensis L12]
Length = 512
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 73/133 (54%), Gaps = 2/133 (1%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI G++WR T LH + HLM N ++L S+G E++ G R+L
Sbjct: 209 ETLIRFGAKENSLILAGEWWRFVTPIILHIGLIHLMFNTFALLSVGAAAERVFGSFRFLI 268
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
+Y ++ + S S+ F P+ GASGAIFG +G+ +R K ++ +I
Sbjct: 269 IYITAGVFGSIGSFLFSPYPSAGASGAIFGCLGALLFLAFSNRKAF--LKTIGTNIMVMI 326
Query: 273 IFNMVCSAAFANI 285
I N+ A +NI
Sbjct: 327 ILNLGLGFAVSNI 339
>gi|409997508|ref|YP_006751909.1| S54 family peptidase [Lactobacillus casei W56]
gi|406358520|emb|CCK22790.1| S54 family peptidase [Lactobacillus casei W56]
Length = 285
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 71/119 (59%), Gaps = 6/119 (5%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +L V +LV++ + L+ +GA++N LI GQ+WRL T F+H + H++
Sbjct: 75 TNAILVVTILVFLLETFSGGSTNNSVLVFYGARLNPLILYGQWWRLMTPVFVHIGLMHIL 134
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGS 246
VN +SL +G E++ G R+ +YF S A + S+ F N+ A GAS AIFGL+G+
Sbjct: 135 VNGFSLYYLGQMTEQLFGHWRFFLLYFISGFAGNVASFAFSPNTLAAGASTAIFGLLGA 193
>gi|421896459|ref|ZP_16326856.1| membrane protein [Ralstonia solanacearum MolK2]
gi|206587624|emb|CAQ18206.1| membrane protein [Ralstonia solanacearum MolK2]
Length = 458
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 78/143 (54%), Gaps = 22/143 (15%)
Query: 132 QWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLI--------------DKGQFWRLATS 177
++T L+A+NVL ++ LLL G + + I G++WRL ++
Sbjct: 95 RFTYALIALNVLAWLV------TLLLGGNPLQTPISILFNLGGNAAFEVQHGEWWRLLSA 148
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA--VG 235
FLHA + HL +N L + G T+E+I GP YL +Y + + SA+S F A VG
Sbjct: 149 TFLHAGVLHLAINMVGLYATGITVERIYGPAAYLLIYLGAGLLGSALSLSFAAQHAIGVG 208
Query: 236 ASGAIFGLVGSFAVFIMRHRNIL 258
ASGA+FG+ G++ V I R+R ++
Sbjct: 209 ASGAVFGVAGAWLVAIGRYRGLM 231
>gi|300698196|ref|YP_003748857.1| putative rhomboid protease [Ralstonia solanacearum CFBP2957]
gi|299074920|emb|CBJ54489.1| putative rhomboid protease [Ralstonia solanacearum CFBP2957]
Length = 543
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 70/116 (60%), Gaps = 4/116 (3%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ G++WRL ++ FLHA + HL +N + L + G +E+I GP YL +Y + + SA+S
Sbjct: 222 VQHGEWWRLLSATFLHAGVLHLAINMFGLYATGVAVERIYGPVAYLLIYLGAGLLGSALS 281
Query: 226 YRFCNSPA--VGASGAIFGLVGSFAVFIMRHRNILGG--GKEELQHLAKVIIFNMV 277
F A VGASGA+FG+ G++ V I R+R+++ K L L +++++V
Sbjct: 282 LSFAAQHAIGVGASGAVFGVAGAWLVAIGRYRSLMPQTLSKRLLTQLGLFVLYSLV 337
>gi|311742190|ref|ZP_07716000.1| rhomboid family protein [Aeromicrobium marinum DSM 15272]
gi|311314683|gb|EFQ84590.1| rhomboid family protein [Aeromicrobium marinum DSM 15272]
Length = 283
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 84/162 (51%), Gaps = 21/162 (12%)
Query: 134 TNILLAVNVLVY-IAQFATQDKLLLWGAKINSLI-----------DKGQFWRLATSAFLH 181
T ++AVNV+V+ + D + G + + + D G +WRL TSAFLH
Sbjct: 73 TMAIIAVNVVVFALTDIVGTDAITAAGRMVGADVIDTQGRLWPGMDDGGYWRLLTSAFLH 132
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN--SPAVGASGA 239
A + HL+ N Y+L GP +E+ G RY+ Y + A+ S A+ Y + + VGASGA
Sbjct: 133 AGVLHLLFNMYALYLFGPFVERALGSARYVAAYLTMAVFSGAVVYLLTDPRTFTVGASGA 192
Query: 240 IFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAA 281
+FGL G V ++R K++++ L ++ N V S A
Sbjct: 193 VFGLFGYALVLLVR-------AKQDVRTLLVLLAVNGVISLA 227
>gi|415885504|ref|ZP_11547432.1| Serine protease of Rhomboid family [Bacillus methanolicus MGA3]
gi|387591173|gb|EIJ83492.1| Serine protease of Rhomboid family [Bacillus methanolicus MGA3]
Length = 518
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 62/100 (62%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GAK N LI++G++WR T FLH + HL++N +L +G +E+I G R++ +Y
Sbjct: 211 LIRFGAKFNPLINEGEWWRFFTPIFLHIGLLHLLMNTLALYYLGTVVERIYGNVRFMLIY 270
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRH 254
++ A S S+ F S + GASGAIFG G+ F + H
Sbjct: 271 LAAGFAGSLASFVFSPSLSAGASGAIFGCFGALLYFGVIH 310
>gi|384250516|gb|EIE23995.1| rhomboid-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 306
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 89/161 (55%), Gaps = 12/161 (7%)
Query: 136 ILLAVNVLVYIAQF----------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
+LLA+N+ VY A A QD L AK + ++ G+++RL T+ FLH +
Sbjct: 59 LLLAINLGVYGAGLVAGLGPEGADAQQDYFLAL-AKTDVGVEAGEYYRLITANFLHDSFV 117
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
HL +CY+L ++ P +E++ G +L Y S++ S ++ ++ VGAS IFG++G
Sbjct: 118 HLGSSCYALATVAPAIEEVLGWDIFLATYLLSSVGGSVGTFILGDAVTVGASSGIFGVIG 177
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANIV 286
+ +++++R++ K +L +A V+ N+V A ++
Sbjct: 178 ALVAYLLKNRSLERTSK-QLVSIAGVVGVNLVMGGHAAGLL 217
>gi|333992831|ref|YP_004525445.1| serine protease [Mycobacterium sp. JDM601]
gi|333488799|gb|AEF38191.1| serine protease [Mycobacterium sp. JDM601]
Length = 264
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 81/146 (55%), Gaps = 16/146 (10%)
Query: 137 LLAVNVLVYIAQFAT---QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
L+A+NVL +I Q ++ +L+LW + + GQ +RL TSAFLH HL++N ++
Sbjct: 67 LIALNVLAFIGQMSSHQLDSELVLW----SPAVADGQLYRLLTSAFLHYGAMHLLLNMWA 122
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFI 251
L +GP +E + G R+ +Y SA+ S Y N+ GASGAIFGL G A I
Sbjct: 123 LYVVGPPLEGLLGRSRFSALYLLSALGGSVTVYLLAPLNTATAGASGAIFGLFG--ATLI 180
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMV 277
+ R + ++ +A +I+ N+V
Sbjct: 181 VGRRL-----QMDIGWVAAIIVINLV 201
>gi|237723366|ref|ZP_04553847.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|229447888|gb|EEO53679.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
Length = 584
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 69/131 (52%), Gaps = 9/131 (6%)
Query: 134 TNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +N+LV+I A+ LL WGA L G +WR T F+H
Sbjct: 156 TPILIDINILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRTVTCNFIHIGAF 215
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLV 244
HL++N Y+ +G +E++ G RR Y + + S+A S Y + + GASG+IFGL
Sbjct: 216 HLLMNMYAFMYVGLLLEELIGGRRMFVSYLLTGLCSAAFSLYMHGETISTGASGSIFGLY 275
Query: 245 GSFAVFIMRHR 255
G F F++ HR
Sbjct: 276 GIFLAFLLFHR 286
>gi|293373190|ref|ZP_06619552.1| peptidase, S54 (rhomboid) family protein [Bacteroides ovatus SD CMC
3f]
gi|292631838|gb|EFF50454.1| peptidase, S54 (rhomboid) family protein [Bacteroides ovatus SD CMC
3f]
Length = 584
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 69/131 (52%), Gaps = 9/131 (6%)
Query: 134 TNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +N+LV+I A+ LL WGA L G +WR T F+H
Sbjct: 156 TPILIDINILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRTVTCNFIHIGAF 215
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLV 244
HL++N Y+ +G +E++ G RR Y + + S+A S Y + + GASG+IFGL
Sbjct: 216 HLLMNMYAFMYVGLLLEELIGGRRMFVSYLLTGLCSAAFSLYMHGETISTGASGSIFGLY 275
Query: 245 GSFAVFIMRHR 255
G F F++ HR
Sbjct: 276 GIFLAFLLFHR 286
>gi|423298194|ref|ZP_17276253.1| hypothetical protein HMPREF1070_04918 [Bacteroides ovatus
CL03T12C18]
gi|392663610|gb|EIY57158.1| hypothetical protein HMPREF1070_04918 [Bacteroides ovatus
CL03T12C18]
Length = 592
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 69/131 (52%), Gaps = 9/131 (6%)
Query: 134 TNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +N+LV+I A+ LL WGA L G +WR T F+H
Sbjct: 164 TPILIDINILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRTVTCNFIHIGAF 223
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLV 244
HL++N Y+ +G +E++ G RR Y + + S+A S Y + + GASG+IFGL
Sbjct: 224 HLLMNMYAFMYVGLLLEELIGGRRMFVSYLLTGLCSAAFSLYMHGETISAGASGSIFGLY 283
Query: 245 GSFAVFIMRHR 255
G F F++ HR
Sbjct: 284 GIFLAFLLFHR 294
>gi|383113335|ref|ZP_09934107.1| hypothetical protein BSGG_3039 [Bacteroides sp. D2]
gi|382948721|gb|EFS32339.2| hypothetical protein BSGG_3039 [Bacteroides sp. D2]
Length = 592
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 69/131 (52%), Gaps = 9/131 (6%)
Query: 134 TNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +N+LV+I A+ LL WGA L G +WR T F+H
Sbjct: 164 TPILIDINILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRTVTCNFIHIGAF 223
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLV 244
HL++N Y+ +G +E++ G RR Y + + S+A S Y + + GASG+IFGL
Sbjct: 224 HLLMNMYAFMYVGLLLEELIGGRRMFVSYLLTGLCSAAFSLYMHGETISTGASGSIFGLY 283
Query: 245 GSFAVFIMRHR 255
G F F++ HR
Sbjct: 284 GIFLAFLLFHR 294
>gi|336417117|ref|ZP_08597446.1| hypothetical protein HMPREF1017_04554 [Bacteroides ovatus
3_8_47FAA]
gi|335936742|gb|EGM98660.1| hypothetical protein HMPREF1017_04554 [Bacteroides ovatus
3_8_47FAA]
Length = 592
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 69/131 (52%), Gaps = 9/131 (6%)
Query: 134 TNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +N+LV+I A+ LL WGA L G +WR T F+H
Sbjct: 164 TPILIDINILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRTVTCNFIHIGAF 223
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLV 244
HL++N Y+ +G +E++ G RR Y + + S+A S Y + + GASG+IFGL
Sbjct: 224 HLLMNMYAFMYVGLLLEELIGGRRMFVSYLLTGLCSAAFSLYMHGETISAGASGSIFGLY 283
Query: 245 GSFAVFIMRHR 255
G F F++ HR
Sbjct: 284 GIFLAFLLFHR 294
>gi|299149420|ref|ZP_07042477.1| putative peptidase, S54 (rhomboid) family [Bacteroides sp. 3_1_23]
gi|298512607|gb|EFI36499.1| putative peptidase, S54 (rhomboid) family [Bacteroides sp. 3_1_23]
Length = 592
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 69/131 (52%), Gaps = 9/131 (6%)
Query: 134 TNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +N+LV+I A+ LL WGA L G +WR T F+H
Sbjct: 164 TPILIDINILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRTVTCNFIHIGAF 223
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLV 244
HL++N Y+ +G +E++ G RR Y + + S+A S Y + + GASG+IFGL
Sbjct: 224 HLLMNMYAFMYVGLLLEELIGGRRMFVSYLLTGLCSAAFSLYMHGETISAGASGSIFGLY 283
Query: 245 GSFAVFIMRHR 255
G F F++ HR
Sbjct: 284 GIFLAFLLFHR 294
>gi|29830873|ref|NP_825507.1| hypothetical protein SAV_4330 [Streptomyces avermitilis MA-4680]
gi|29607986|dbj|BAC72042.1| putative membrane protein [Streptomyces avermitilis MA-4680]
Length = 298
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 100/195 (51%), Gaps = 29/195 (14%)
Query: 113 GHEGTSHLDTARTNLFIG--------RQWTNILLAVNVLVYIAQFATQDKL-----LLWG 159
G GT H TA I R T IL+ +N+ V++ Q + D+ LL
Sbjct: 57 GGSGTGHAPTATQPRTIAGGTVAADPRLITKILIGLNLAVFLVQLSVGDRFTERFELLGR 116
Query: 160 AKINSL-----IDKGQFWRLATSAFLHA--NIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
A + L + +GQ +RL T+ FLH + H++ N SL IG +E G RYL
Sbjct: 117 AYVPLLGSLQGVAEGQSYRLLTAMFLHDPHSYVHILFNMLSLWWIGGPLEAALGRIRYLT 176
Query: 213 VYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK 270
+YF S +A S ++Y N P++GASGAIFGL G+ AV +MR N +++ +
Sbjct: 177 LYFVSGLAGSGLTYLIAAPNQPSLGASGAIFGLFGATAV-LMRRLN------YDMRPVIA 229
Query: 271 VIIFNMVCSAAFANI 285
+++ N++ + ++NI
Sbjct: 230 LLVINLIFTFGWSNI 244
>gi|296268056|ref|YP_003650688.1| rhomboid family protein [Thermobispora bispora DSM 43833]
gi|296090843|gb|ADG86795.1| Rhomboid family protein [Thermobispora bispora DSM 43833]
Length = 286
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 84/143 (58%), Gaps = 14/143 (9%)
Query: 116 GTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLA 175
G + + TAR + WT LLA+N+L Y+A+ ++++ + + +G++WRL
Sbjct: 72 GGAPVTTARVS------WT--LLAINLLAYVAEVLDPERVISAYGMWSIGVYQGEWWRLI 123
Query: 176 TSAFLHA---NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP 232
TSAFLHA + H++ N ++L IGP +E++ G R+ +Y SA+ S Y F
Sbjct: 124 TSAFLHAPPPSFWHILFNMWALYVIGPDLERLLGSARFAALYLLSALGGSVAIYLF-GVA 182
Query: 233 AVGASGAIFGLVGSFAVFIMRHR 255
A+GASGAI+GL G A+F++ R
Sbjct: 183 ALGASGAIYGLFG--ALFVVARR 203
>gi|126438092|ref|YP_001073783.1| rhomboid family protein [Mycobacterium sp. JLS]
gi|126237892|gb|ABO01293.1| Rhomboid family protein [Mycobacterium sp. JLS]
Length = 289
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 84/149 (56%), Gaps = 16/149 (10%)
Query: 134 TNILLAVNVLVYIAQFAT---QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+AVNVLV++ Q + + + +LW + G+++RLATSAFLH HL+ N
Sbjct: 79 TYALIAVNVLVFLMQTTSGQLEREFVLW----TPGVADGEWYRLATSAFLHYGAMHLLFN 134
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFA 248
++L +GP +E G R+ +Y SA+ S + Y N+ GASGA+FGL G+
Sbjct: 135 MWALYVVGPPLEMWLGRLRFGALYALSALGGSVLVYLLSPINAATAGASGAVFGLFGAMF 194
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMV 277
V + R N+ +++ +A +II N+V
Sbjct: 195 V-VARKLNL------DIRGIAAIIILNLV 216
>gi|417983680|ref|ZP_12624316.1| GlpG family membrane protein [Lactobacillus casei 21/1]
gi|410527949|gb|EKQ02811.1| GlpG family membrane protein [Lactobacillus casei 21/1]
Length = 227
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 71/119 (59%), Gaps = 6/119 (5%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +LAV + V++ + L+ +GA++N LI GQ+WRL T F+H + H++
Sbjct: 17 TNAILAVTISVFLLETFSGGSTNNSVLVFYGARLNPLILYGQWWRLMTPVFVHIGLMHIL 76
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGS 246
VN +SL +G E++ G R+ +YF S A + S+ F N+ A GAS AIFGL+G+
Sbjct: 77 VNGFSLYYLGQMTEQLFGHWRFFLLYFISGFAGNVASFAFSPNTLAAGASTAIFGLLGA 135
>gi|297584599|ref|YP_003700379.1| rhomboid protease [Bacillus selenitireducens MLS10]
gi|297143056|gb|ADH99813.1| Rhomboid protease [Bacillus selenitireducens MLS10]
Length = 526
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 63/103 (61%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GAK + I G++WR ++ F+H HL +N +L +G +E+I G R+ G+Y
Sbjct: 219 LVEFGAKYDPAILDGEWWRFVSAMFIHIGPLHLFMNSLALFFLGAAVERIFGTGRFFGIY 278
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
F + + S S+ F ++ + GASGAIFGL G+ F +RH+ +
Sbjct: 279 FLAGLFGSVASFVFNDNISAGASGAIFGLFGALLYFGVRHKKL 321
>gi|118467848|ref|YP_889287.1| rhomboid family protein [Mycobacterium smegmatis str. MC2 155]
gi|399989299|ref|YP_006569649.1| membrane protein in rhomboid family [Mycobacterium smegmatis str.
MC2 155]
gi|118169135|gb|ABK70031.1| rhomboid family protein [Mycobacterium smegmatis str. MC2 155]
gi|399233861|gb|AFP41354.1| Conserved membrane protein in rhomboid family [Mycobacterium
smegmatis str. MC2 155]
Length = 250
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 84/149 (56%), Gaps = 15/149 (10%)
Query: 134 TNILLAVNVLVYIAQFATQD---KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+AVNVL+++ Q A D +L LW + +L D +++RL TS FLH HL+ N
Sbjct: 40 TYTLIAVNVLMFVLQIAGGDLESRLTLWPPAL-ALHD--EYYRLVTSMFLHYGAMHLLFN 96
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFA 248
++L +GP +EK G R+ +Y S + S + Y NS GASGAIFGL G+
Sbjct: 97 MWALYVVGPPLEKWLGLTRFGVLYALSGLGGSVLVYMLSPLNSATAGASGAIFGLFGAIF 156
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMV 277
V + RH N+ +++ + +++ N+V
Sbjct: 157 V-VARHLNL------DVRAIGVIVVINLV 178
>gi|339448421|ref|ZP_08651977.1| peptidase S54, rhomboid domain-containing protein [Lactobacillus
fructivorans KCTC 3543]
Length = 224
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 10/154 (6%)
Query: 134 TNILLAVNVLVYIAQFATQD-----KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +LL V V++Y+ LL +GA+ N L+ GQ+WRL T F+H H++
Sbjct: 16 TYLLLFVMVVIYLLMTMNGGSENVFNLLKFGAQSNQLVRDGQWWRLITPIFVHIGFQHIL 75
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
+N +L +G +E I G RY ++ S I + MS+ N + G+S AIFGL G+F
Sbjct: 76 INGITLYYLGKLIEPIVGHLRYFIIFMVSGICGNLMSFALGNGISAGSSTAIFGLFGAFL 135
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAF 282
+ ++R G + ++ AK + +V + F
Sbjct: 136 MIAFQYR-----GNDFVRSTAKTFVLFVVINLVF 164
>gi|383821590|ref|ZP_09976832.1| hypothetical protein MPHLEI_19664 [Mycobacterium phlei RIVM601174]
gi|383332932|gb|EID11395.1| hypothetical protein MPHLEI_19664 [Mycobacterium phlei RIVM601174]
Length = 248
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 86/154 (55%), Gaps = 10/154 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
T L+AVNVLV++ Q + + ++ D G+F+RL TSAFLH + H++ N ++
Sbjct: 39 TYTLIAVNVLVFLLQAVLPGFTREFVLQPYAVAD-GEFYRLLTSAFLHYGLTHILFNMWA 97
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFI 251
L +GP +E G R++G+Y SA+ S + Y N+ GASGAIFGL G A F+
Sbjct: 98 LYVVGPALEAALGRLRFVGLYALSALGGSVLVYLLSAPNAATAGASGAIFGLFG--ATFV 155
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
+ R +++ +A +I+ N+V + F I
Sbjct: 156 VGKRL-----NMDVRWVAAIIVINLVFTFVFPLI 184
>gi|414160916|ref|ZP_11417179.1| hypothetical protein HMPREF9310_01553 [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410876595|gb|EKS24493.1| hypothetical protein HMPREF9310_01553 [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 485
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 74/126 (58%), Gaps = 7/126 (5%)
Query: 137 LLAVNVLVYIAQFA-----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
L+A+N+++++ F T LL WG ++ + G+ +RL +S F+H N H+++N
Sbjct: 162 LIAINIIIWLFMFLIINAFTNRSLLDWGGLVHFNVVHGEIYRLISSMFIHFNFEHILMNM 221
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGS-FAV 249
SL G +E I G + LG+YF S I + +S NS +VGASGAIFGL+GS FA+
Sbjct: 222 LSLFIFGKLVEAIAGHWKMLGIYFISGIFGNIVSLALDTNSISVGASGAIFGLIGSLFAI 281
Query: 250 FIMRHR 255
+ +
Sbjct: 282 MYLSKQ 287
>gi|456012071|gb|EMF45791.1| Rhomboid family protein [Planococcus halocryophilus Or1]
Length = 202
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 4/119 (3%)
Query: 137 LLAVNVLVYIAQF--ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
L+A+N+LVY+ + + + +G N I +GQ+WR T FLH+ + HL+ N +SL
Sbjct: 21 LIALNLLVYVLTWLPSLGQWIYFYGVGSNFYIAEGQWWRFFTPMFLHSGVMHLLFNMFSL 80
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFAVFI 251
GP +E++ G R++ +Y + +SA +Y + VGASGAIFG+ G+F +
Sbjct: 81 FLFGPELERLTGKIRFITIYLLAGFFASAATYFLQPLDYSHVGASGAIFGVFGAFGALV 139
>gi|108802111|ref|YP_642308.1| rhomboid-like protein [Mycobacterium sp. MCS]
gi|119871264|ref|YP_941216.1| rhomboid family protein [Mycobacterium sp. KMS]
gi|108772530|gb|ABG11252.1| Rhomboid-like protein [Mycobacterium sp. MCS]
gi|119697353|gb|ABL94426.1| Rhomboid family protein [Mycobacterium sp. KMS]
Length = 289
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 84/149 (56%), Gaps = 16/149 (10%)
Query: 134 TNILLAVNVLVYIAQFAT---QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+AVNVLV++ Q + + + +LW + G+++RLATSAFLH HL+ N
Sbjct: 79 TFALIAVNVLVFLMQTTSGQLEREFVLW----TPGVADGEWYRLATSAFLHYGAMHLLFN 134
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFA 248
++L +GP +E G R+ +Y SA+ S + Y N+ GASGA+FGL G+
Sbjct: 135 MWALYVVGPPLEMWLGRLRFGALYALSALGGSVLVYLLSPINAATAGASGAVFGLFGAMF 194
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMV 277
V + R N+ +++ +A +II N+V
Sbjct: 195 V-VARKLNL------DIRGIAAIIILNLV 216
>gi|157273306|gb|ABV27205.1| integral membrane protein Rhomboid family protein [Candidatus
Chloracidobacterium thermophilum]
Length = 386
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 73/128 (57%), Gaps = 7/128 (5%)
Query: 136 ILLAVNVLVYI-AQFA----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
+L+ +NV++++ FA + L +GA LI +G+ WRL FLH + HL+ N
Sbjct: 37 VLIGINVVMFLLTAFAGGSTDPEVLTAFGACNRKLIAQGELWRLVVPMFLHIGVIHLVAN 96
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSFA 248
Y+L +GP +E + G R+ +Y S I SY F + ++ GASGA+FG+ G+
Sbjct: 97 MYALWVVGPQLESLYGSARFTILYVLSGIGGFVASYFFAHPESIGAGASGALFGMFGALL 156
Query: 249 VFIMRHRN 256
VF+ ++R+
Sbjct: 157 VFVYKYRS 164
>gi|374374022|ref|ZP_09631681.1| Peptidase S54, rhomboid domain [Niabella soli DSM 19437]
gi|373233464|gb|EHP53258.1| Peptidase S54, rhomboid domain [Niabella soli DSM 19437]
Length = 490
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 69/123 (56%), Gaps = 9/123 (7%)
Query: 134 TNILLAVNVLVYIAQ--------FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +N+LV+I + LL WGA + +GQ+WRL T+ FLH I
Sbjct: 156 TPILIDLNILVFILMTISGVNILMPDNESLLNWGANFRPITLEGQWWRLLTNCFLHVGIF 215
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLV 244
HL++N Y+L IG +E + G R++ Y + I +S S + + + + GASGAIFG+
Sbjct: 216 HLLLNMYALLYIGVLLEPLLGRTRFISAYLLTGITASITSLWWHDLTISAGASGAIFGMY 275
Query: 245 GSF 247
G F
Sbjct: 276 GVF 278
>gi|308197805|gb|ADO17919.1| rhomboid protease 1 [Mycobacterium smegmatis]
Length = 296
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 84/149 (56%), Gaps = 15/149 (10%)
Query: 134 TNILLAVNVLVYIAQFATQD---KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+AVNVL+++ Q A D +L LW + +L D +++RL TS FLH HL+ N
Sbjct: 86 TYTLIAVNVLMFVLQIAGGDLESRLTLWPPAL-ALHD--EYYRLVTSMFLHYGAMHLLFN 142
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFA 248
++L +GP +EK G R+ +Y S + S + Y NS GASGAIFGL G+
Sbjct: 143 MWALYVVGPPLEKWLGLTRFGVLYALSGLGGSVLVYMLSPLNSATAGASGAIFGLFGAIF 202
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMV 277
V + RH N+ +++ + +++ N+V
Sbjct: 203 V-VARHLNL------DVRAIGVIVVINLV 224
>gi|15613984|ref|NP_242287.1| hypothetical protein BH1421 [Bacillus halodurans C-125]
gi|10174038|dbj|BAB05140.1| BH1421 [Bacillus halodurans C-125]
Length = 514
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 6/134 (4%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GAK N I G++WRL +S FLH I H M+N +L +G T+E+I G R+ +Y
Sbjct: 215 LIEFGAKYNPAIADGEWWRLLSSMFLHIGILHFMMNSLALFYLGGTVERIYGTSRFFIIY 274
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
F + +A S S+ + GASGAIFG G+ F H+ + + + ++
Sbjct: 275 FIAGLAGSIASFALNAHVSAGASGAIFGCFGALLYFGTVHKKLF------FRTMGSSVLL 328
Query: 275 NMVCSAAFANIVKI 288
+V + AF I+ +
Sbjct: 329 ILVFNLAFGFIIPM 342
>gi|419714376|ref|ZP_14241793.1| rhomboid family protein [Mycobacterium abscessus M94]
gi|382945655|gb|EIC69948.1| rhomboid family protein [Mycobacterium abscessus M94]
Length = 247
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 75/134 (55%), Gaps = 9/134 (6%)
Query: 131 RQW-TNILLAVNVLVYIAQFATQDKLLLWGAKI-------NSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + + G+++ + +G+ WR T+ FLH
Sbjct: 26 RAWITWALIAVNVLVYTATVSDGVDGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 85
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
+ H+ VN SL IGP +E+ G +RY +Y ++ + SSA + F N+ GASGAI+
Sbjct: 86 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAAAMWFSPNAVVAGASGAIY 145
Query: 242 GLVGSFAVFIMRHR 255
GL+G+ V +R R
Sbjct: 146 GLLGAALVLSLRER 159
>gi|402298353|ref|ZP_10818053.1| rhomboid protein membrane-associated serine peptidase [Bacillus
alcalophilus ATCC 27647]
gi|401726454|gb|EJS99682.1| rhomboid protein membrane-associated serine peptidase [Bacillus
alcalophilus ATCC 27647]
Length = 519
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 73/129 (56%), Gaps = 5/129 (3%)
Query: 134 TNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T LL +NV ++I D L+ GAK + LI G++WR+ TS F+H HL+
Sbjct: 192 TYALLVMNVFIFILIELYGDSESILTLVEVGAKYSPLILDGEWWRIITSMFIHIGFLHLL 251
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
+N +L +G +E+I G R++ +YF++ + + +S+ S GASGAIFGL G+
Sbjct: 252 MNSLALYFLGTLVERIYGSFRFVFIYFTAGVIGTLVSFWMNLSIGAGASGAIFGLFGALL 311
Query: 249 VFIMRHRNI 257
F + +R +
Sbjct: 312 YFGLNYRKL 320
>gi|386335464|ref|YP_006031634.1| transmembrane hypothetical [Ralstonia solanacearum Po82]
gi|334197914|gb|AEG71098.1| transmembrane hypothetical [Ralstonia solanacearum Po82]
Length = 569
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 24/164 (14%)
Query: 132 QWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLI--------------DKGQFWRLATS 177
++T L+A+NVL ++ LLL G + + I G++WRL ++
Sbjct: 206 RFTYALIALNVLAWLV------TLLLGGNPLQTPISVLFNLGGNAAFEVQHGEWWRLLSA 259
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA--VG 235
FLHA + HL +N L + G +E+I GP YL Y + + SA+S F A VG
Sbjct: 260 TFLHAGVLHLAINMVGLYATGIAVERIYGPAAYLLTYLGAGLLGSALSLSFAAQHAIGVG 319
Query: 236 ASGAIFGLVGSFAVFIMRHRNILGG--GKEELQHLAKVIIFNMV 277
ASGA+FG+ G++ V I R+R ++ K L L +++++V
Sbjct: 320 ASGAVFGVAGAWLVAIGRYRGLMPQTLSKRLLTQLGLFVLYSLV 363
>gi|408790096|ref|ZP_11201729.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
florum 2F]
gi|408520670|gb|EKK20705.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
florum 2F]
Length = 222
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 60/102 (58%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
LL +GA+ N LI GQ+WRL T FLH + HL++NC +L +G +EK G RYL ++
Sbjct: 41 LLRYGAQSNPLIQAGQWWRLVTPIFLHIGLQHLLLNCLTLFYVGNLLEKTVGHFRYLVLF 100
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRN 256
S I + S+ N + G+S AIFGL+G F + + R
Sbjct: 101 LGSGIGGNLFSFAAGNVISAGSSTAIFGLLGVFLMLSLVVRG 142
>gi|441514647|ref|ZP_20996463.1| rhomboid family protein [Gordonia amicalis NBRC 100051]
gi|441450558|dbj|GAC54424.1| rhomboid family protein [Gordonia amicalis NBRC 100051]
Length = 294
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 79/143 (55%), Gaps = 10/143 (6%)
Query: 123 ARTNLFIGRQW-TNILLAVNVLVY---IAQFATQDK----LLLWGAKINSLIDKGQFWRL 174
ART L G+ + T L+ +N+LV+ +AQ D + G + S + G++WRL
Sbjct: 59 ARTRLSEGKPYVTYTLIGINILVFLLCVAQAGFGDPGAATIFSSGDLLKSDVAAGEYWRL 118
Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV 234
TS FLH ++ H+ VN SL +G +E G RYL VY + + SA F N A+
Sbjct: 119 LTSGFLHFSVMHVAVNMLSLYILGRDLELALGMARYLAVYLIALLGGSAAVMLFENDRAL 178
Query: 235 --GASGAIFGLVGSFAVFIMRHR 255
GASGAI+GL+G+ V I++ R
Sbjct: 179 TAGASGAIYGLMGAMLVIILKAR 201
>gi|199597186|ref|ZP_03210618.1| Membrane-associated serine protease [Lactobacillus rhamnosus HN001]
gi|258508700|ref|YP_003171451.1| membrane-associated serine protease [Lactobacillus rhamnosus GG]
gi|385828361|ref|YP_005866133.1| hypothetical protein [Lactobacillus rhamnosus GG]
gi|199591990|gb|EDZ00065.1| Membrane-associated serine protease [Lactobacillus rhamnosus HN001]
gi|257148627|emb|CAR87600.1| Membrane-associated serine protease [Lactobacillus rhamnosus GG]
gi|259650006|dbj|BAI42168.1| conserved hypothetical protein [Lactobacillus rhamnosus GG]
Length = 229
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 75/119 (63%), Gaps = 6/119 (5%)
Query: 134 TNILLAVNVLVYIAQF----ATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +LAV +LV+I + +T + +L+ +GA+ N LI GQ+WRL T F+H + H++
Sbjct: 17 TNGILAVTILVFILETLSGGSTNNAVLVTYGARANPLILYGQWWRLITPVFVHIGLTHIL 76
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGS 246
+N +SL +G E++ G R+ +YF + A + S+ F N+ A GAS AIFGL+G+
Sbjct: 77 MNGFSLYFLGQMTERLFGHWRFFLLYFIAGFAGNVASFAFSPNTLAAGASTAIFGLLGA 135
>gi|418070876|ref|ZP_12708151.1| membrane-associated serine protease [Lactobacillus rhamnosus R0011]
gi|423078786|ref|ZP_17067463.1| peptidase, S54 family [Lactobacillus rhamnosus ATCC 21052]
gi|357540296|gb|EHJ24313.1| membrane-associated serine protease [Lactobacillus rhamnosus R0011]
gi|357549074|gb|EHJ30922.1| peptidase, S54 family [Lactobacillus rhamnosus ATCC 21052]
Length = 229
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 75/119 (63%), Gaps = 6/119 (5%)
Query: 134 TNILLAVNVLVYIAQF----ATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +LAV +LV+I + +T + +L+ +GA+ N LI GQ+WRL T F+H + H++
Sbjct: 17 TNGILAVTILVFILETLSGGSTNNAVLVTYGARANPLILYGQWWRLITPVFVHIGLTHIL 76
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGS 246
+N +SL +G E++ G R+ +YF + A + S+ F N+ A GAS AIFGL+G+
Sbjct: 77 MNGFSLYFLGQMTERLFGHWRFFLLYFIAGFAGNVASFAFSPNTLAAGASTAIFGLLGA 135
>gi|326383928|ref|ZP_08205612.1| Rhomboid family protein [Gordonia neofelifaecis NRRL B-59395]
gi|326197387|gb|EGD54577.1| Rhomboid family protein [Gordonia neofelifaecis NRRL B-59395]
Length = 248
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 18/163 (11%)
Query: 134 TNILLAVNVLVYIA---------QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T L+ +N+L ++A + ++ G I L + ++WRL TS FLH ++
Sbjct: 29 TYALIGINLLAFVAVVLQAGGVASLLQRSTIMQQGTLITGLGFQDEYWRLLTSGFLHWSV 88
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA--MSYRFCNSPAVGASGAIFG 242
H+ +N SL IG +E++ GP RYL VY + SA M+ N GASGA++G
Sbjct: 89 VHIAMNMISLYLIGADLERVLGPVRYLAVYLIGLLGGSAAVMALGSENVATAGASGAVYG 148
Query: 243 LVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
L+G+ + ++R K L VI+ N+V S + I
Sbjct: 149 LLGALLIVVIRL-------KLPATTLITVIVLNVVLSLSIPGI 184
>gi|334131953|ref|ZP_08505715.1| Rhomboid-like protein [Methyloversatilis universalis FAM5]
gi|333443426|gb|EGK71391.1| Rhomboid-like protein [Methyloversatilis universalis FAM5]
Length = 383
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 71/135 (52%), Gaps = 10/135 (7%)
Query: 134 TNILLAVNVLVYIAQFATQDKL--------LLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T +L+A+N+ V+ A A L L WGA GQ+WRL ++ FLH +
Sbjct: 22 TVVLIALNLAVFAAMLAGGAGLWHSQNGVQLAWGANFGPATKDGQWWRLGSAMFLHFGLL 81
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGL 243
HL +N SL G +E++ GP R+L +Y S + + +S AV GASGAIFG+
Sbjct: 82 HLGMNMASLFDGGRLVERMFGPLRFLAIYVLSGLTGNLLSLIVQGDRAVSGGASGAIFGV 141
Query: 244 VGSFAVFIMRHRNIL 258
G+ F+ + R+ L
Sbjct: 142 YGALLAFLWQQRDTL 156
>gi|70726368|ref|YP_253282.1| hypothetical protein SH1367 [Staphylococcus haemolyticus JCSC1435]
gi|68447092|dbj|BAE04676.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 485
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 71/113 (62%), Gaps = 2/113 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
N+L+ + +++Y+ F+ KLL G ++ + G+++RL TS FLH N H+++N SL
Sbjct: 166 NVLIWLIMILYLNHFSDV-KLLDLGGLVHFNVVHGEWYRLITSMFLHFNFEHILMNMLSL 224
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGS 246
G +E I GP R LG+Y S + + +S F ++ +VGASGAIFGL+GS
Sbjct: 225 FIFGKIVESIVGPLRMLGIYVISGLLGNFISLSFNLHTVSVGASGAIFGLIGS 277
>gi|410455491|ref|ZP_11309370.1| serine protease of Rhomboid family, contains TPR repeats [Bacillus
bataviensis LMG 21833]
gi|409929185|gb|EKN66272.1| serine protease of Rhomboid family, contains TPR repeats [Bacillus
bataviensis LMG 21833]
Length = 519
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 6/162 (3%)
Query: 95 AFASSLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQW-TNILLAVNVLVYI-AQF--- 149
+FA S + +K S + T R L G+ + T + +A+ +V+ +F
Sbjct: 145 SFAEDYSEQDVEAIKKESLDFANKKVKTERAILSNGKPFFTYVFIAIQAIVFFWLEFHGG 204
Query: 150 -ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPR 208
L+ +GAK+N LI G++WR T FLH HL +N +L +G T+EKI G
Sbjct: 205 STNTSTLIKYGAKVNQLILGGEWWRFITPIFLHIGFVHLAMNTLALYFLGTTVEKIFGSV 264
Query: 209 RYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
R+L +Y + + S+ F ++ + GASGAI+G G+ F
Sbjct: 265 RFLLIYLFAGVMGVIASFIFSSTLSAGASGAIYGCFGALLYF 306
>gi|345851676|ref|ZP_08804644.1| hypothetical protein SZN_17977 [Streptomyces zinciresistens K42]
gi|345636882|gb|EGX58421.1| hypothetical protein SZN_17977 [Streptomyces zinciresistens K42]
Length = 295
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 94/181 (51%), Gaps = 26/181 (14%)
Query: 116 GTSHL-DTARTNLFIG-------RQWTNILLAVNVLVYIAQFATQ---DKLLLWGA---- 160
GT H D +R G R T IL+AVN+ V+IA ++Q + L L G+
Sbjct: 59 GTGHAPDASRPRTIAGGSIAADPRLVTKILVAVNLAVFIAVQSSQSLRNDLYLIGSWPPA 118
Query: 161 --KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
+ + +G++WRL TS F H + H N SL +G +E G RYL +YF S
Sbjct: 119 PFQPTQGVAEGEWWRLVTSMFTHEAVWHFAFNMLSLWWLGGPLEAALGRARYLALYFCSG 178
Query: 219 IASSAMSYRFCN--SPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNM 276
+A SA +Y + + ++GASGAIFGL G+ AV + R + +++ + +++ N+
Sbjct: 179 LAGSAFTYLLADPHTASLGASGAIFGLFGATAVLLRRL-------QYDMRPIIALLVINL 231
Query: 277 V 277
+
Sbjct: 232 I 232
>gi|83745575|ref|ZP_00942633.1| transmembrane hypothetical [Ralstonia solanacearum UW551]
gi|83727652|gb|EAP74772.1| transmembrane hypothetical [Ralstonia solanacearum UW551]
Length = 569
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 77/143 (53%), Gaps = 22/143 (15%)
Query: 132 QWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLI--------------DKGQFWRLATS 177
++T L+A+NVL ++ LLL G + + I G++WRL ++
Sbjct: 206 RFTYALIALNVLAWLV------TLLLGGNPLQTPISVLFSLGGNAAFEVQHGEWWRLLSA 259
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA--VG 235
FLHA + HL +N L + G +E+I GP YL +Y + + SA+S F A VG
Sbjct: 260 TFLHAGVLHLAINMVGLYATGIAVERIYGPAAYLLIYLGAGLLGSALSLSFAAQHAIGVG 319
Query: 236 ASGAIFGLVGSFAVFIMRHRNIL 258
ASGA+FG+ G++ V I R+R ++
Sbjct: 320 ASGAVFGVAGAWLVAIGRYRGLM 342
>gi|255690223|ref|ZP_05413898.1| peptidase, S54 family [Bacteroides finegoldii DSM 17565]
gi|260624242|gb|EEX47113.1| peptidase, S54 family [Bacteroides finegoldii DSM 17565]
Length = 584
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 67/131 (51%), Gaps = 9/131 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDK--------LLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +N+LV+I A+ + LL WGA L G +WR T F+H
Sbjct: 156 TPILIDLNILVFIVMIASGVEIMSPSTLSLLKWGADFGPLTLTGDWWRAVTCNFIHIGAF 215
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLV 244
HL++N Y+ +G +E + G RR Y + + S+ S Y + + GASGAIFGL
Sbjct: 216 HLLMNMYAFMYVGLLLEDLIGSRRMFMSYLLTGLCSAVFSLYMHGETISAGASGAIFGLY 275
Query: 245 GSFAVFIMRHR 255
G F F+ HR
Sbjct: 276 GIFLAFLFFHR 286
>gi|229552508|ref|ZP_04441233.1| S54 family peptidase [Lactobacillus rhamnosus LMS2-1]
gi|258539881|ref|YP_003174380.1| membrane-associated serine protease [Lactobacillus rhamnosus Lc
705]
gi|385835529|ref|YP_005873303.1| rhomboid family protein [Lactobacillus rhamnosus ATCC 8530]
gi|229314060|gb|EEN80033.1| S54 family peptidase [Lactobacillus rhamnosus LMS2-1]
gi|257151557|emb|CAR90529.1| Membrane-associated serine protease [Lactobacillus rhamnosus Lc
705]
gi|355395020|gb|AER64450.1| rhomboid family protein [Lactobacillus rhamnosus ATCC 8530]
Length = 229
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 75/119 (63%), Gaps = 6/119 (5%)
Query: 134 TNILLAVNVLVYIAQF----ATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +LAV +LV+I + +T + +L+ +GA+ N LI GQ+WRL T F+H + H++
Sbjct: 17 TNGILAVTILVFILETLSGGSTNNAVLVAYGARANPLILYGQWWRLITPVFVHIGLTHIL 76
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGS 246
+N +SL +G E++ G R+ +YF + A + S+ F N+ A GAS AIFGL+G+
Sbjct: 77 MNGFSLYFLGQMTERLFGHWRFFLLYFIAGFAGNVASFAFSPNTLAAGASTAIFGLLGA 135
>gi|387929721|ref|ZP_10132398.1| serine protease of Rhomboid family [Bacillus methanolicus PB1]
gi|387586539|gb|EIJ78863.1| serine protease of Rhomboid family [Bacillus methanolicus PB1]
Length = 518
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 60/100 (60%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GAK N LI +G++WR T FLH + HL++N SL +G +E++ G R+L +Y
Sbjct: 211 LIRFGAKFNLLIIEGEWWRFFTPIFLHVGLLHLLMNTLSLYYLGTVVERLYGNVRFLLIY 270
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRH 254
+ A S S+ F S + GASGAIFG G+ F + H
Sbjct: 271 LFAGFAGSLTSFVFSPSLSAGASGAIFGCFGALLYFGVIH 310
>gi|207738893|ref|YP_002257286.1| membrane protein [Ralstonia solanacearum IPO1609]
gi|206592264|emb|CAQ59170.1| membrane protein [Ralstonia solanacearum IPO1609]
Length = 543
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 77/143 (53%), Gaps = 22/143 (15%)
Query: 132 QWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLI--------------DKGQFWRLATS 177
++T L+A+NVL ++ LLL G + + I G++WRL ++
Sbjct: 180 RFTYALIALNVLAWLV------TLLLGGNPLQTPISVLFSLGGNAAFEVQHGEWWRLLSA 233
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA--VG 235
FLHA + HL +N L + G +E+I GP YL +Y + + SA+S F A VG
Sbjct: 234 TFLHAGVLHLAINMVGLYATGIAVERIYGPAAYLLIYLGAGLLGSALSLSFAAQHAIGVG 293
Query: 236 ASGAIFGLVGSFAVFIMRHRNIL 258
ASGA+FG+ G++ V I R+R ++
Sbjct: 294 ASGAVFGVAGAWLVAIGRYRGLM 316
>gi|365925240|ref|ZP_09448003.1| rhomboid family integral membrane protein [Lactobacillus mali KCTC
3596 = DSM 20444]
gi|420266562|ref|ZP_14769020.1| Integral membrane protein, Rhomboid family [Lactobacillus mali KCTC
3596 = DSM 20444]
gi|394425142|gb|EJE98158.1| Integral membrane protein, Rhomboid family [Lactobacillus mali KCTC
3596 = DSM 20444]
Length = 216
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 70/120 (58%), Gaps = 6/120 (5%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T LL +NVLV+I + L+ +GAK+N+LI GQ+WRL T FLH H++
Sbjct: 8 TYTLLGINVLVFILMTLAGGSQSVGVLVEFGAKVNTLIVAGQWWRLITPMFLHIGFEHIV 67
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSF 247
+N +L +G +E I G R+L VY S IA + S+ F ++ + GAS A+FGL G +
Sbjct: 68 LNMITLYFVGIQLENILGRGRFLAVYLVSGIAGNLASFAFNPDALSAGASTALFGLFGIY 127
>gi|366089319|ref|ZP_09455792.1| membrane-associated serine protease [Lactobacillus acidipiscis KCTC
13900]
Length = 217
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 73/128 (57%), Gaps = 5/128 (3%)
Query: 134 TNILLAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+ +N++VY+ + L+ +GAK+N LI +G++WRL T F+H + H++
Sbjct: 10 TYFLIIINIIVYLLMTVAGGSENTNVLVFFGAKVNQLIGQGEWWRLFTPMFIHIGLQHIV 69
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
+N +L IG +E + G R++ +Y S + + S+ F S + GAS +IFGL G+F
Sbjct: 70 LNMVTLYFIGIQIEAVFGKWRFVILYLISGLGGNIASFVFSPSISAGASTSIFGLFGAFL 129
Query: 249 VFIMRHRN 256
+ +R
Sbjct: 130 MLGESYRQ 137
>gi|421768840|ref|ZP_16205550.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
rhamnosus LRHMDP2]
gi|421771007|ref|ZP_16207668.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
rhamnosus LRHMDP3]
gi|411185689|gb|EKS52816.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
rhamnosus LRHMDP2]
gi|411186442|gb|EKS53566.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
rhamnosus LRHMDP3]
Length = 229
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 75/119 (63%), Gaps = 6/119 (5%)
Query: 134 TNILLAVNVLVYIAQF----ATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +LAV +LV+I + +T + +L+ +GA+ N LI GQ+WRL T F+H + H++
Sbjct: 17 TNGILAVTILVFILETLSGGSTNNAVLVTYGARANLLILYGQWWRLITPVFVHIGLTHIL 76
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGS 246
+N +SL +G E++ G R+ +YF + A + S+ F N+ A GAS AIFGL+G+
Sbjct: 77 MNGFSLYFLGQMTERLFGHWRFFLLYFIAGFAGNVASFAFSPNTLAAGASTAIFGLLGA 135
>gi|374988154|ref|YP_004963649.1| hypothetical protein SBI_05398 [Streptomyces bingchenggensis BCW-1]
gi|297158806|gb|ADI08518.1| hypothetical protein SBI_05398 [Streptomyces bingchenggensis BCW-1]
Length = 295
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 99/202 (49%), Gaps = 27/202 (13%)
Query: 104 NGGGTRKNSGHEGTSH-LDTARTNLFIG-------RQWTNILLAVNVLVYIAQFATQDKL 155
GG + G T H + AR G R T IL+ +N+ V+ A D+
Sbjct: 46 RGGAQGSSGGRVPTGHPVRDARPRTIAGGALTADPRLVTKILIGLNLAVWFVALAIGDRF 105
Query: 156 L----LWGAKINSL------IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKIC 205
+ L G + + +GQ++RL T+ FLH H+ N SL +G +E
Sbjct: 106 VNALDLVGRAYDPTAAGLVGVAEGQWYRLVTAMFLHQQAYHIAFNMLSLWWLGGPLEAAL 165
Query: 206 GPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKE 263
G RYL VY + + SA+SY N P++GASGAIFGL+G+ AV +MR N
Sbjct: 166 GRARYLAVYLLAGLGGSALSYLLAAQNQPSLGASGAIFGLLGATAV-LMRRLN------Y 218
Query: 264 ELQHLAKVIIFNMVCSAAFANI 285
+++ + +++ N++ + A++ I
Sbjct: 219 DMRPVIALLVLNLIFTFAWSGI 240
>gi|29347217|ref|NP_810720.1| hypothetical protein BT_1807 [Bacteroides thetaiotaomicron
VPI-5482]
gi|29339116|gb|AAO76914.1| conserved protein, with rhomboid family domain [Bacteroides
thetaiotaomicron VPI-5482]
Length = 586
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 12/160 (7%)
Query: 108 TRKNSGHEGTSHLDTARTNLFIGRQW---TNILLAVNVLVYIAQFATQD--------KLL 156
T + + S +++ + FI R+ T +L+ +N+LV+I AT LL
Sbjct: 129 TEEERRLQAESEKESSFIHFFIPRKGFIATPVLIDINILVFILMAATGAGILEPSTLALL 188
Query: 157 LWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFS 216
WGA L G +WR T F+H HL++N Y+ IG +E + G RR Y
Sbjct: 189 NWGADFGPLTLTGDWWRAVTCNFVHIGAFHLLMNMYAFIYIGIWLEHLIGTRRMFVSYLL 248
Query: 217 SAIASSAMS-YRFCNSPAVGASGAIFGLVGSFAVFIMRHR 255
+ + S+ S Y + + GASG+IFGL G F F++ HR
Sbjct: 249 TGLCSAVFSLYMHAETISTGASGSIFGLYGIFLAFLLFHR 288
>gi|393788564|ref|ZP_10376691.1| hypothetical protein HMPREF1068_02971 [Bacteroides nordii
CL02T12C05]
gi|392654244|gb|EIY47892.1| hypothetical protein HMPREF1068_02971 [Bacteroides nordii
CL02T12C05]
Length = 467
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 68/130 (52%), Gaps = 9/130 (6%)
Query: 134 TNILLAVNVLVYIAQ-------FATQD-KLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T ILL +NVLV+I F + +LL WGA L G +WR T F+H I
Sbjct: 38 TPILLGINVLVFILMTLSGVNLFEPKTLELLQWGADFGPLTLTGSWWRTLTCNFVHIGIV 97
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLV 244
H+++N Y+L IG +E + G RR Y + + S+ S + + + GASGAIFGL
Sbjct: 98 HILMNMYALVYIGVLLEPMFGTRRMFAAYLLTGLCSAVSSLFWHAETISAGASGAIFGLY 157
Query: 245 GSFAVFIMRH 254
G F F+ H
Sbjct: 158 GIFLAFLCFH 167
>gi|383786745|ref|YP_005471314.1| hypothetical protein [Fervidobacterium pennivorans DSM 9078]
gi|383109592|gb|AFG35195.1| putative membrane protein [Fervidobacterium pennivorans DSM 9078]
Length = 233
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 71/124 (57%), Gaps = 8/124 (6%)
Query: 131 RQWTNILLAVNVLVYIAQFATQD-------KLLLWGAKINSLIDKGQFWRLATSAFLHAN 183
RQ ++ ++ ++ +A + Q LL+GA+ L+D+G++WR+ T+ F+H
Sbjct: 12 RQLYMYIIMIDSIILLAFYVVQTFFVSEPYAYLLFGAQYGPLVDQGEWWRIVTAMFMHGG 71
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFG 242
HL N Y+L +G E I G R+L + + IA + ++ F +S +VGASGAIFG
Sbjct: 72 FLHLAFNMYALYILGSYAEGIYGTYRFLSYFILTGIAGNIATHFFYHDSLSVGASGAIFG 131
Query: 243 LVGS 246
LVG+
Sbjct: 132 LVGA 135
>gi|383125162|ref|ZP_09945818.1| hypothetical protein BSIG_4372 [Bacteroides sp. 1_1_6]
gi|251838549|gb|EES66635.1| hypothetical protein BSIG_4372 [Bacteroides sp. 1_1_6]
Length = 586
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 12/160 (7%)
Query: 108 TRKNSGHEGTSHLDTARTNLFIGRQW---TNILLAVNVLVYIAQFATQD--------KLL 156
T + + S +++ + FI R+ T +L+ +N+LV+I AT LL
Sbjct: 129 TEEERRLQAESEKESSFIHFFIPRKGFIATPVLIDINILVFILMAATGAGILEPSTLALL 188
Query: 157 LWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFS 216
WGA L G +WR T F+H HL++N Y+ IG +E + G RR Y
Sbjct: 189 NWGADFGPLTLTGDWWRAVTCNFVHIGAFHLLMNMYAFIYIGIWLEHLIGTRRMFVSYLL 248
Query: 217 SAIASSAMS-YRFCNSPAVGASGAIFGLVGSFAVFIMRHR 255
+ + S+ S Y + + GASG+IFGL G F F++ HR
Sbjct: 249 TGLCSAVFSLYMHAETISAGASGSIFGLYGIFLAFLLFHR 288
>gi|295085069|emb|CBK66592.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Bacteroides xylanisolvens XB1A]
Length = 584
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 66/131 (50%), Gaps = 9/131 (6%)
Query: 134 TNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +N+LV+I A+ LL WGA L G +WR T F+H
Sbjct: 156 TPILIDLNILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRAVTCNFIHIGAF 215
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLV 244
HL++N Y+ +G +E + G RR Y + + S+ S Y + + GASGAIFGL
Sbjct: 216 HLLMNMYAFMYVGLLLEDLIGSRRMFMSYLLTGLCSAVFSLYMHGETISAGASGAIFGLY 275
Query: 245 GSFAVFIMRHR 255
G F F+ HR
Sbjct: 276 GIFLAFLFFHR 286
>gi|336406188|ref|ZP_08586849.1| hypothetical protein HMPREF0127_04162 [Bacteroides sp. 1_1_30]
gi|335935437|gb|EGM97389.1| hypothetical protein HMPREF0127_04162 [Bacteroides sp. 1_1_30]
Length = 584
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 66/131 (50%), Gaps = 9/131 (6%)
Query: 134 TNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +N+LV+I A+ LL WGA L G +WR T F+H
Sbjct: 156 TPILIDLNILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRAVTCNFIHIGAF 215
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLV 244
HL++N Y+ +G +E + G RR Y + + S+ S Y + + GASGAIFGL
Sbjct: 216 HLLMNMYAFMYVGLLLEDLIGSRRMFMSYLLTGLCSAVFSLYMHGETISAGASGAIFGLY 275
Query: 245 GSFAVFIMRHR 255
G F F+ HR
Sbjct: 276 GIFLAFLFFHR 286
>gi|386312683|ref|YP_006008848.1| rhomboid family protein [Shewanella putrefaciens 200]
gi|319425308|gb|ADV53382.1| Rhomboid family protein [Shewanella putrefaciens 200]
Length = 523
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 11/153 (7%)
Query: 110 KNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFAT-------QDKLLL-WGAK 161
+N+ E S L+ R G T +L+++N V+I + Q LLL WGA
Sbjct: 305 RNTTSELQSWLEFIRPK--AGFMVTPVLMSLNAFVFIFMAWSSSHVIHFQSHLLLEWGAN 362
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+ G++WRL TS+F+H +AHL++N Y L +G +E + G R L VY S I +
Sbjct: 363 FRPNVLAGEWWRLVTSSFIHGGLAHLVLNLYGLFFVGTFIEPLLGKWRLLLVYLVSGILA 422
Query: 222 SAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMR 253
S S + ++ +VGASGAI GL G +++ +
Sbjct: 423 SVASLCWYDATISVGASGAIMGLFGILVIWVWK 455
>gi|298480750|ref|ZP_06998946.1| S54 family peptidase [Bacteroides sp. D22]
gi|298273184|gb|EFI14749.1| S54 family peptidase [Bacteroides sp. D22]
Length = 584
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 66/131 (50%), Gaps = 9/131 (6%)
Query: 134 TNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +N+LV+I A+ LL WGA L G +WR T F+H
Sbjct: 156 TPILIDLNILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRAVTCNFIHIGAF 215
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLV 244
HL++N Y+ +G +E + G RR Y + + S+ S Y + + GASGAIFGL
Sbjct: 216 HLLMNMYAFMYVGLLLEDLIGSRRMFMSYLLTGLCSAVFSLYMHGETISAGASGAIFGLY 275
Query: 245 GSFAVFIMRHR 255
G F F+ HR
Sbjct: 276 GIFLAFLFFHR 286
>gi|441521785|ref|ZP_21003443.1| rhomboid family protein [Gordonia sihwensis NBRC 108236]
gi|441458723|dbj|GAC61404.1| rhomboid family protein [Gordonia sihwensis NBRC 108236]
Length = 248
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 79/160 (49%), Gaps = 18/160 (11%)
Query: 137 LLAVNVLVYIA---QFATQDKLLL------WGAKINSLIDKGQFWRLATSAFLHANIAHL 187
L+AVN+ +IA Q LLL GA + L + ++WRL TS FLH +I H+
Sbjct: 32 LIAVNLAAFIAVVLQAGGTSNLLLKSSIMQQGALVTGLGLENEYWRLLTSGFLHWSILHV 91
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA--VGASGAIFGLVG 245
+N SL IG +E++ GP RYL VY SA A GASGAI+GL+G
Sbjct: 92 AMNMISLYLIGADLERVLGPARYLAVYLIGLFGGSAAVVALGPELAATAGASGAIYGLLG 151
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
+ + ++R K L VI+ N+V S + I
Sbjct: 152 ALLIVVIRL-------KLPATTLITVIVLNVVLSLSIPGI 184
>gi|262200065|ref|YP_003271273.1| rhomboid family protein [Gordonia bronchialis DSM 43247]
gi|262083412|gb|ACY19380.1| Rhomboid family protein [Gordonia bronchialis DSM 43247]
Length = 303
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 85/161 (52%), Gaps = 16/161 (9%)
Query: 134 TNILLAVNVLVY---IAQFATQDK----LLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T L+ +N++V+ +A+ + L+ G+ + ++ +G++WRL T+ FLH ++ H
Sbjct: 80 TYALIVINLIVFGLCVAEAGITNPGNAALMSDGSLVKGIVGEGEYWRLLTAGFLHFSVMH 139
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA--MSYRFCNSPAVGASGAIFGLV 244
+ VN SL IG +E+ G RYL VY S + SA M + N GASGAI+GL+
Sbjct: 140 VAVNMISLYIIGRDLERALGTYRYLAVYLISLLGGSAAVMLFEADNVQTAGASGAIYGLI 199
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
G+ V +++ R + +I FN+V S + I
Sbjct: 200 GAMLVIVLKAR-------VPATPVLVIIGFNVVLSVSLPGI 233
>gi|418619999|ref|ZP_13182810.1| peptidase, S54 family [Staphylococcus hominis VCU122]
gi|374823562|gb|EHR87557.1| peptidase, S54 family [Staphylococcus hominis VCU122]
Length = 485
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 87/159 (54%), Gaps = 11/159 (6%)
Query: 134 TNILLAVNVLV------YIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
T L+A+NVL+ Y+ F+ KLL G ++ + G+++RL TS FLH N H+
Sbjct: 159 TYTLIAINVLIWLYMKIYLNHFSDI-KLLDVGGLVHFNVVHGEWYRLITSMFLHFNFEHI 217
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGS 246
++N SL G +E I GP + LG+Y S + + S F ++ +VGASGAIFGL+G
Sbjct: 218 LMNMLSLFIFGKIVETIVGPYKMLGIYLISGLFGNFASLSFNISTISVGASGAIFGLIG- 276
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
A+ M + + K +Q L V+I + S +NI
Sbjct: 277 -AILTMMYLSKTFNKKMIIQLLVVVLIL-IFVSLFMSNI 313
>gi|418423189|ref|ZP_12996358.1| rhomboid family protein [Mycobacterium abscessus subsp. bolletii
BD]
gi|363993164|gb|EHM14390.1| rhomboid family protein [Mycobacterium abscessus subsp. bolletii
BD]
Length = 252
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 74/134 (55%), Gaps = 9/134 (6%)
Query: 131 RQW-TNILLAVNVLVYIAQFATQDKLLLWGAKI-------NSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + + G+++ + +G+ WR T+ FLH
Sbjct: 31 RAWITWALIAVNVLVYTATLSDGVDGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 90
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
+ H+ VN SL IGP +E+ G +RY +Y ++ + SSA + N+ GASGAI+
Sbjct: 91 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAAAMWLSPNAVVAGASGAIY 150
Query: 242 GLVGSFAVFIMRHR 255
GL+G+ V +R R
Sbjct: 151 GLLGAALVLSLRER 164
>gi|386725483|ref|YP_006191809.1| hypothetical protein B2K_25730 [Paenibacillus mucilaginosus K02]
gi|384092608|gb|AFH64044.1| hypothetical protein B2K_25730 [Paenibacillus mucilaginosus K02]
Length = 383
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 134 TNILLAVNVLVYIAQFA-----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L +NV V++ A + L+ +GAK N ID+G++WR T FLH HL
Sbjct: 199 TFALTGINVAVWLLMTAYGGSDNPETLVRFGAKYNPYIDRGEYWRWITPIFLHIGGLHLW 258
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N +L S+G +E+ G R+ Y + IA + SY F S + GASGAIFGL+G
Sbjct: 259 FNLTALLSLGGRLERGIGSLRFALFYLLAGIAGNIASYTFSPSISAGASGAIFGLMGVLL 318
Query: 249 VFIMRHRNILG 259
V + ++ G
Sbjct: 319 VLSIMDPDLWG 329
>gi|314936330|ref|ZP_07843677.1| rhomboid family protein [Staphylococcus hominis subsp. hominis C80]
gi|313654949|gb|EFS18694.1| rhomboid family protein [Staphylococcus hominis subsp. hominis C80]
Length = 485
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 87/159 (54%), Gaps = 11/159 (6%)
Query: 134 TNILLAVNVLV------YIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
T L+A+NVL+ Y+ F+ KLL G ++ + G+++RL TS FLH N H+
Sbjct: 159 TYTLIAINVLIWLYMKIYLNHFSDI-KLLDVGGLVHFNVVHGEWYRLITSMFLHFNFEHI 217
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGS 246
++N SL G +E I GP + LG+Y S + + S F ++ +VGASGAIFGL+G
Sbjct: 218 LMNMLSLFIFGKIVETIVGPYKMLGIYLISGLFGNFASLSFNISTISVGASGAIFGLIG- 276
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
A+ M + + K +Q L V+I + S +NI
Sbjct: 277 -AILTMMYLSKTFNKKMIIQLLVVVLIL-IFVSLFMSNI 313
>gi|262409313|ref|ZP_06085856.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294644959|ref|ZP_06722693.1| peptidase, S54 (rhomboid) family protein [Bacteroides ovatus SD CC
2a]
gi|294805963|ref|ZP_06764830.1| peptidase, S54 (rhomboid) family protein [Bacteroides xylanisolvens
SD CC 1b]
gi|345509393|ref|ZP_08788992.1| hypothetical protein BSAG_03733 [Bacteroides sp. D1]
gi|229446228|gb|EEO52019.1| hypothetical protein BSAG_03733 [Bacteroides sp. D1]
gi|262352765|gb|EEZ01862.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292639680|gb|EFF57964.1| peptidase, S54 (rhomboid) family protein [Bacteroides ovatus SD CC
2a]
gi|294446845|gb|EFG15445.1| peptidase, S54 (rhomboid) family protein [Bacteroides xylanisolvens
SD CC 1b]
Length = 584
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 66/131 (50%), Gaps = 9/131 (6%)
Query: 134 TNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +N+LV+I A+ LL WGA L G +WR T F+H
Sbjct: 156 TPILIDLNILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRAVTCNFIHIGAF 215
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLV 244
HL++N Y+ +G +E + G RR Y + + S+ S Y + + GASGAIFGL
Sbjct: 216 HLLMNMYAFMYVGLLLEGLIGSRRMFMSYLLTGLCSAVFSLYMHGETISAGASGAIFGLY 275
Query: 245 GSFAVFIMRHR 255
G F F+ HR
Sbjct: 276 GIFLAFLFFHR 286
>gi|442323116|ref|YP_007363137.1| S54 family peptidase [Myxococcus stipitatus DSM 14675]
gi|441490758|gb|AGC47453.1| S54 family peptidase [Myxococcus stipitatus DSM 14675]
Length = 518
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 70/125 (56%), Gaps = 1/125 (0%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCY 192
+L+ ++ L++ D L+ WGAK L+ + GQ WRL T+ LH ++ HL++N
Sbjct: 10 AGVLVGLHGLLWSQGPVDVDALVRWGAKAGPLVLEAGQVWRLLTANLLHRDVLHLLLNVT 69
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIM 252
L + G +E++C YL + A+ + A S + + +VGASG ++G +G+ V
Sbjct: 70 VLVAAGSALERVCRRSDYLAFLVTVALTTMASSLAWSGAVSVGASGLVYGCLGALLVLGR 129
Query: 253 RHRNI 257
RHR++
Sbjct: 130 RHRSL 134
>gi|423219507|ref|ZP_17206003.1| hypothetical protein HMPREF1061_02776 [Bacteroides caccae
CL03T12C61]
gi|392625402|gb|EIY19471.1| hypothetical protein HMPREF1061_02776 [Bacteroides caccae
CL03T12C61]
Length = 584
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 79/164 (48%), Gaps = 12/164 (7%)
Query: 103 FNGGGTRKNSGHEGTSHLDTARTNLFIGRQW---TNILLAVNVLVYIAQFA--------T 151
FN T + + ++ + FI R+ T IL+ +N+L++I A +
Sbjct: 124 FNRPLTEEEEAYLKEIEKKSSFISFFIPRKGFIATPILMDLNLLIFILMVAFGVGILEPS 183
Query: 152 QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
LL WGA L G +WR T F+H HL++N Y+ IG +E + G RR
Sbjct: 184 TLALLKWGADFGPLTLTGDWWRAITCNFIHIGAFHLLMNMYAFMYIGLWLEDLIGTRRMF 243
Query: 212 GVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLVGSFAVFIMRH 254
Y + + S+A S Y + + GASGAIFGL G F F++ H
Sbjct: 244 ISYLLTGVCSAAFSLYMHAETISAGASGAIFGLYGIFLAFLLFH 287
>gi|365872871|ref|ZP_09412407.1| rhomboid family protein [Mycobacterium massiliense CCUG 48898 = JCM
15300]
gi|363992937|gb|EHM14164.1| rhomboid family protein [Mycobacterium massiliense CCUG 48898 = JCM
15300]
Length = 252
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 74/134 (55%), Gaps = 9/134 (6%)
Query: 131 RQW-TNILLAVNVLVYIAQFATQDKLLLWGAKI-------NSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + + G+++ + +G+ WR T+ FLH
Sbjct: 31 RAWITWALIAVNVLVYTATVSDGVDGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 90
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
+ H+ VN SL IGP +E+ G +RY +Y ++ + SSA + N+ GASGAI+
Sbjct: 91 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAAAMWLSPNAVVAGASGAIY 150
Query: 242 GLVGSFAVFIMRHR 255
GL+G+ V +R R
Sbjct: 151 GLLGAALVLSLRER 164
>gi|302531387|ref|ZP_07283729.1| predicted protein [Streptomyces sp. AA4]
gi|302440282|gb|EFL12098.1| predicted protein [Streptomyces sp. AA4]
Length = 320
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 73/133 (54%), Gaps = 11/133 (8%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGA-KINSL--------IDKGQFWRLATSAFLHANI 184
T L+AVNV +++ L GA +I L + G++WR+ TS FLH
Sbjct: 88 TATLIAVNVAIFLITVVQAKSLFDNGAARIEMLGELWTYPALGGGEWWRIFTSGFLHYGP 147
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFG 242
H+ N +SL +G +E++ G R+L +YF S +S F N P+ GASGAIFG
Sbjct: 148 IHIAANAFSLWMMGRALEQVFGKSRFLALYFVSMFGASTAVLLFDAPNRPSAGASGAIFG 207
Query: 243 LVGSFAVFIMRHR 255
L+GS+AV +++ R
Sbjct: 208 LLGSYAVIVLKLR 220
>gi|228476169|ref|ZP_04060877.1| rhomboid family protein [Staphylococcus hominis SK119]
gi|228269992|gb|EEK11472.1| rhomboid family protein [Staphylococcus hominis SK119]
Length = 485
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 87/159 (54%), Gaps = 11/159 (6%)
Query: 134 TNILLAVNVLV------YIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
T L+A+NVL+ Y+ F+ KLL G ++ + G+++RL TS FLH N H+
Sbjct: 159 TYTLIAINVLIWLYMKIYLNHFSDI-KLLDVGGLVHFNVVHGEWYRLITSMFLHFNFEHI 217
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGS 246
++N SL G +E I GP + LG+Y S + + S F ++ +VGASGAIFGL+G
Sbjct: 218 LMNMLSLFIFGKIVETIVGPYKMLGIYLISGLFGNFASLSFNISTISVGASGAIFGLIG- 276
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
A+ M + + K +Q L V+I + S +NI
Sbjct: 277 -AILTMMYLSKTFNKKMIIQLLVVVLIL-IFVSLFMSNI 313
>gi|418251560|ref|ZP_12877691.1| rhomboid family protein [Mycobacterium abscessus 47J26]
gi|420934166|ref|ZP_15397439.1| rhomboid family protein [Mycobacterium massiliense 1S-151-0930]
gi|420935691|ref|ZP_15398961.1| rhomboid family protein [Mycobacterium massiliense 1S-152-0914]
gi|420944426|ref|ZP_15407681.1| rhomboid family protein [Mycobacterium massiliense 1S-153-0915]
gi|420949678|ref|ZP_15412927.1| rhomboid family protein [Mycobacterium massiliense 1S-154-0310]
gi|420954531|ref|ZP_15417773.1| rhomboid family protein [Mycobacterium massiliense 2B-0626]
gi|420958705|ref|ZP_15421939.1| rhomboid family protein [Mycobacterium massiliense 2B-0107]
gi|420963609|ref|ZP_15426833.1| rhomboid family protein [Mycobacterium massiliense 2B-1231]
gi|420994639|ref|ZP_15457785.1| rhomboid family protein [Mycobacterium massiliense 2B-0307]
gi|420995600|ref|ZP_15458743.1| rhomboid family protein [Mycobacterium massiliense 2B-0912-R]
gi|421004948|ref|ZP_15468070.1| rhomboid family protein [Mycobacterium massiliense 2B-0912-S]
gi|353448717|gb|EHB97118.1| rhomboid family protein [Mycobacterium abscessus 47J26]
gi|392132578|gb|EIU58323.1| rhomboid family protein [Mycobacterium massiliense 1S-151-0930]
gi|392146032|gb|EIU71756.1| rhomboid family protein [Mycobacterium massiliense 1S-153-0915]
gi|392147198|gb|EIU72919.1| rhomboid family protein [Mycobacterium massiliense 1S-152-0914]
gi|392150719|gb|EIU76432.1| rhomboid family protein [Mycobacterium massiliense 1S-154-0310]
gi|392153444|gb|EIU79151.1| rhomboid family protein [Mycobacterium massiliense 2B-0626]
gi|392180741|gb|EIV06393.1| rhomboid family protein [Mycobacterium massiliense 2B-0307]
gi|392191420|gb|EIV17045.1| rhomboid family protein [Mycobacterium massiliense 2B-0912-R]
gi|392193651|gb|EIV19275.1| rhomboid family protein [Mycobacterium massiliense 2B-0912-S]
gi|392246522|gb|EIV71999.1| rhomboid family protein [Mycobacterium massiliense 2B-1231]
gi|392248431|gb|EIV73907.1| rhomboid family protein [Mycobacterium massiliense 2B-0107]
Length = 232
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 74/134 (55%), Gaps = 9/134 (6%)
Query: 131 RQW-TNILLAVNVLVYIAQFATQDKLLLWGAKI-------NSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + + G+++ + +G+ WR T+ FLH
Sbjct: 11 RAWITWALIAVNVLVYTATVSDGVDGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 70
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
+ H+ VN SL IGP +E+ G +RY +Y ++ + SSA + N+ GASGAI+
Sbjct: 71 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAAAMWLSPNAVVAGASGAIY 130
Query: 242 GLVGSFAVFIMRHR 255
GL+G+ V +R R
Sbjct: 131 GLLGAALVLSLRER 144
>gi|153808412|ref|ZP_01961080.1| hypothetical protein BACCAC_02706 [Bacteroides caccae ATCC 43185]
gi|149128734|gb|EDM19951.1| peptidase, S54 family [Bacteroides caccae ATCC 43185]
Length = 584
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 79/164 (48%), Gaps = 12/164 (7%)
Query: 103 FNGGGTRKNSGHEGTSHLDTARTNLFIGRQW---TNILLAVNVLVYIAQFA--------T 151
FN T + + ++ + FI R+ T IL+ +N+L++I A +
Sbjct: 124 FNRPLTEEEEAYLKEIEKKSSFISFFIPRKGFIATPILMDLNLLIFILMVAFGVGILEPS 183
Query: 152 QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
LL WGA L G +WR T F+H HL++N Y+ IG +E + G RR
Sbjct: 184 TLALLKWGADFGPLTLTGDWWRAITCNFIHIGAFHLLMNMYAFMYIGLWLEDLIGTRRMF 243
Query: 212 GVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLVGSFAVFIMRH 254
Y + + S+A S Y + + GASGAIFGL G F F++ H
Sbjct: 244 ISYLLTGVCSAAFSLYMHAETISAGASGAIFGLYGIFLAFLLFH 287
>gi|336391270|ref|ZP_08572669.1| membrane-associated serine protease [Lactobacillus coryniformis
subsp. torquens KCTC 3535]
Length = 209
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 61/104 (58%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK+N LI +GQ+WRL FLH+ + H+ VN +L IG +E + G R+
Sbjct: 25 NVLVFFGAKVNILIQQGQWWRLIMPIFLHSGLMHIAVNSVTLYFIGMQIESLFGHWRFTL 84
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRN 256
+Y S I + S+ F +VGAS A+FGL G+F + + R
Sbjct: 85 IYLLSGIVGNIASFVFNTGISVGASTALFGLFGAFFMLVEAFRQ 128
>gi|337749843|ref|YP_004644005.1| hypothetical protein KNP414_05611 [Paenibacillus mucilaginosus
KNP414]
gi|336301032|gb|AEI44135.1| hypothetical protein KNP414_05611 [Paenibacillus mucilaginosus
KNP414]
Length = 383
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 134 TNILLAVNVLVYIAQFA-----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L +NV V++ A + L+ +GAK N ID+G++WR T FLH HL
Sbjct: 199 TFALTGINVAVWLLMTAYGGSDNPETLVRFGAKYNPYIDRGEYWRWITPIFLHIGGLHLW 258
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N +L S+G +E+ G R+ Y + IA + SY F S + GASGAIFGL+G
Sbjct: 259 FNSTALLSLGGRLERGIGSLRFALFYLLAGIAGNIASYTFSPSISAGASGAIFGLMGVLL 318
Query: 249 VFIMRHRNILG 259
V + ++ G
Sbjct: 319 VLSIMDPDLWG 329
>gi|403385795|ref|ZP_10927852.1| hypothetical protein KJC30_13905 [Kurthia sp. JC30]
Length = 206
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 81/147 (55%), Gaps = 7/147 (4%)
Query: 137 LLAVNVLVYIAQFATQ--DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
L+ +N++VY+ + + +GA N LI G++WRL T+ F+H H++ N + L
Sbjct: 21 LILINLIVYVIGLVPRINSYIFNYGAAANWLIGAGEYWRLVTAIFIHGGFLHILSNMFWL 80
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSY--RFCNSPAVGASGAIFGLVGSFAVFIM 252
GP +EKI G R++ ++ S I + +Y + +VGASGA+FG++G++ +
Sbjct: 81 YVFGPELEKIAGRARFIFIFLMSGIIGNVATYFVQDLGYVSVGASGAVFGMLGAYLALVY 140
Query: 253 RHRNILGGGKEELQHLAKVIIFNMVCS 279
R+I + Q + ++I +++ +
Sbjct: 141 YTRHIF---PQLRQMILPLVIISVIIT 164
>gi|386712717|ref|YP_006179039.1| S54 family peptidase [Halobacillus halophilus DSM 2266]
gi|384072272|emb|CCG43762.1| S54 family peptidase [Halobacillus halophilus DSM 2266]
Length = 256
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 73/132 (55%), Gaps = 5/132 (3%)
Query: 138 LAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSI 197
L + +L+ QF LL +G +N LI +G++WRL T FLHA AH + N +SL
Sbjct: 26 LLLWILIDFLQFGFALDLLRFGIGVNVLILEGEYWRLVTPIFLHAGFAHALFNSFSLVLF 85
Query: 198 GPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA----VGASGAIFGLVGSFAVFIMR 253
GP +E+I G +++ +Y + I + ++ N A +GASGAIFG+ G + ++
Sbjct: 86 GPALEQILGKFKFIFMYLFAGIVGNLGTF-IVNPDAYYQHLGASGAIFGIFGVYVFMVLF 144
Query: 254 HRNILGGGKEEL 265
++++ ++
Sbjct: 145 RKHLIDQANSQI 156
>gi|269124334|ref|YP_003297704.1| Rhomboid family protein [Thermomonospora curvata DSM 43183]
gi|268309292|gb|ACY95666.1| Rhomboid family protein [Thermomonospora curvata DSM 43183]
Length = 302
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 85/159 (53%), Gaps = 17/159 (10%)
Query: 134 TNILLAVNVLVYIAQFATQD---KLLLWGAKINSL-----IDKGQFWRLATSAFLHAN-- 183
T L+A+NVLVY+AQ ++ + G + + + G+++RL T+AFLH+
Sbjct: 77 TYTLIALNVLVYLAQLSSSRIVYDFAMVGVRFDPYGEMHGVADGEWYRLITAAFLHSQPG 136
Query: 184 -----IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGAS 237
+ H++ N ++L IGP +E++ G R+ +Y SA+ S + Y AVGAS
Sbjct: 137 GGSFGVTHILFNMWALWVIGPQLEQVLGRWRFTSLYLLSALGGSVLLYLVDPTGAAVGAS 196
Query: 238 GAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNM 276
GAIFGL G+F V I + N GG L L VI F +
Sbjct: 197 GAIFGLFGAFFV-IAKRLNAPAGGIVFLLVLNLVITFTV 234
>gi|374609055|ref|ZP_09681852.1| Rhomboid family protein [Mycobacterium tusciae JS617]
gi|373552795|gb|EHP79398.1| Rhomboid family protein [Mycobacterium tusciae JS617]
Length = 282
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 94/167 (56%), Gaps = 20/167 (11%)
Query: 134 TNILLAVNVLVYIAQFATQD---KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T +L+ +NV+++ Q + D +L+L+ + + G+++RL TSAFLH + H++ N
Sbjct: 72 TYVLIGINVVMFGLQTVSVDLQRELVLF----SPAVADGEWYRLLTSAFLHYGVTHILFN 127
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN--SPAVGASGAIFGLVGSFA 248
++L +GP +E G R++G+YF+SA+ S + Y + + GASGAIFGL G A
Sbjct: 128 MWALYVVGPPLEAALGRLRFIGLYFTSALGGSVLVYLLSSLGAQTAGASGAIFGLFG--A 185
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANIVKIESRHTLT 295
F++ R L +++ + +I NM AF ++ + S ++
Sbjct: 186 TFVVGKRLNL-----DVRWVIGLIALNM----AFTFVIPLVSSQNIS 223
>gi|379722713|ref|YP_005314844.1| hypothetical protein PM3016_4963 [Paenibacillus mucilaginosus 3016]
gi|378571385|gb|AFC31695.1| hypothetical protein PM3016_4963 [Paenibacillus mucilaginosus 3016]
Length = 383
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 134 TNILLAVNVLVYIAQFA-----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L +NV V++ A + L+ +GAK N ID+G++WR T FLH HL
Sbjct: 199 TFALTGINVAVWLLMTAYGGSDNPETLVRFGAKYNPYIDRGEYWRWITPIFLHIGGLHLW 258
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N +L S+G +E+ G R+ Y + IA + SY F S + GASGAIFGL+G
Sbjct: 259 FNSTALLSLGGRLERGIGSLRFALFYLLAGIAGNIASYTFSPSISAGASGAIFGLMGVLL 318
Query: 249 VFIMRHRNILG 259
V + ++ G
Sbjct: 319 VLSIMDPDLWG 329
>gi|414584256|ref|ZP_11441396.1| rhomboid family protein [Mycobacterium abscessus 5S-1215]
gi|420881430|ref|ZP_15344797.1| rhomboid family protein [Mycobacterium abscessus 5S-0304]
gi|420884483|ref|ZP_15347843.1| rhomboid family protein [Mycobacterium abscessus 5S-0421]
gi|420887277|ref|ZP_15350635.1| rhomboid family protein [Mycobacterium abscessus 5S-0422]
gi|420896232|ref|ZP_15359571.1| rhomboid family protein [Mycobacterium abscessus 5S-0708]
gi|420901413|ref|ZP_15364744.1| rhomboid family protein [Mycobacterium abscessus 5S-0817]
gi|420907312|ref|ZP_15370630.1| rhomboid family protein [Mycobacterium abscessus 5S-1212]
gi|420974770|ref|ZP_15437960.1| rhomboid family protein [Mycobacterium abscessus 5S-0921]
gi|421052000|ref|ZP_15514994.1| rhomboid family protein [Mycobacterium massiliense CCUG 48898 = JCM
15300]
gi|392080246|gb|EIU06072.1| rhomboid family protein [Mycobacterium abscessus 5S-0421]
gi|392086339|gb|EIU12164.1| rhomboid family protein [Mycobacterium abscessus 5S-0304]
gi|392093991|gb|EIU19787.1| rhomboid family protein [Mycobacterium abscessus 5S-0422]
gi|392095544|gb|EIU21339.1| rhomboid family protein [Mycobacterium abscessus 5S-0708]
gi|392098774|gb|EIU24568.1| rhomboid family protein [Mycobacterium abscessus 5S-0817]
gi|392105216|gb|EIU31002.1| rhomboid family protein [Mycobacterium abscessus 5S-1212]
gi|392119408|gb|EIU45176.1| rhomboid family protein [Mycobacterium abscessus 5S-1215]
gi|392159888|gb|EIU85581.1| rhomboid family protein [Mycobacterium abscessus 5S-0921]
gi|392240603|gb|EIV66096.1| rhomboid family protein [Mycobacterium massiliense CCUG 48898]
Length = 247
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 74/134 (55%), Gaps = 9/134 (6%)
Query: 131 RQW-TNILLAVNVLVYIAQFATQDKLLLWGAKI-------NSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + + G+++ + +G+ WR T+ FLH
Sbjct: 26 RAWITWALIAVNVLVYTATVSDGVDGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 85
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
+ H+ VN SL IGP +E+ G +RY +Y ++ + SSA + N+ GASGAI+
Sbjct: 86 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAAAMWLSPNAVVAGASGAIY 145
Query: 242 GLVGSFAVFIMRHR 255
GL+G+ V +R R
Sbjct: 146 GLLGAALVLSLRER 159
>gi|14520881|ref|NP_126356.1| hypothetical protein PAB1920 [Pyrococcus abyssi GE5]
gi|5458098|emb|CAB49587.1| Membrane protein, rhomboid protein homolog [Pyrococcus abyssi GE5]
gi|380741425|tpe|CCE70059.1| TPA: hypothetical protein PAB1920 [Pyrococcus abyssi GE5]
Length = 212
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 62/97 (63%), Gaps = 4/97 (4%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
D+ +L A+IN L+ +GQ+WRL T+ FLH H +N + L +G +E I G +R+L
Sbjct: 48 DRAILELAQINELVFRGQWWRLLTAIFLHMGFVHFALNAFWLFYLGTDLEGIVGTKRFLI 107
Query: 213 VYFSSAIASSAMSYRFCNSPAV---GASGAIFGLVGS 246
V+F+SA+A + +S F P + GASG +FG+VG+
Sbjct: 108 VFFASALAGNVLSL-FTLDPRIASGGASGGLFGIVGA 143
>gi|420866475|ref|ZP_15329864.1| rhomboid family protein [Mycobacterium abscessus 4S-0303]
gi|420871266|ref|ZP_15334648.1| rhomboid family protein [Mycobacterium abscessus 4S-0726-RA]
gi|420875716|ref|ZP_15339092.1| rhomboid family protein [Mycobacterium abscessus 4S-0726-RB]
gi|420988850|ref|ZP_15452006.1| rhomboid family protein [Mycobacterium abscessus 4S-0206]
gi|421040347|ref|ZP_15503355.1| rhomboid family protein [Mycobacterium abscessus 4S-0116-R]
gi|421046065|ref|ZP_15509065.1| rhomboid family protein [Mycobacterium abscessus 4S-0116-S]
gi|392065191|gb|EIT91040.1| rhomboid family protein [Mycobacterium abscessus 4S-0303]
gi|392067191|gb|EIT93039.1| rhomboid family protein [Mycobacterium abscessus 4S-0726-RB]
gi|392070736|gb|EIT96583.1| rhomboid family protein [Mycobacterium abscessus 4S-0726-RA]
gi|392183129|gb|EIV08780.1| rhomboid family protein [Mycobacterium abscessus 4S-0206]
gi|392221275|gb|EIV46798.1| rhomboid family protein [Mycobacterium abscessus 4S-0116-R]
gi|392235518|gb|EIV61016.1| rhomboid family protein [Mycobacterium abscessus 4S-0116-S]
Length = 247
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 74/134 (55%), Gaps = 9/134 (6%)
Query: 131 RQW-TNILLAVNVLVYIAQFATQDKLLLWGAKI-------NSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + + G+++ + +G+ WR T+ FLH
Sbjct: 26 RAWITWALIAVNVLVYTATVSDGVDGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 85
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
+ H+ VN SL IGP +E+ G +RY +Y ++ + SSA + N+ GASGAI+
Sbjct: 86 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAAAMWLSPNAVVAGASGAIY 145
Query: 242 GLVGSFAVFIMRHR 255
GL+G+ V +R R
Sbjct: 146 GLLGAALVLSLRER 159
>gi|453362588|dbj|GAC81512.1| hypothetical protein GM1_036_00120 [Gordonia malaquae NBRC 108250]
Length = 234
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 16/161 (9%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLW-------GAKINSLIDKGQFWRLATSAFLHANIAH 186
T L+A+NV+V+ A L+ G I+ Q+WRL TS FLH ++ H
Sbjct: 18 TYTLIAINVVVFAAVLLQAGGTTLFYSSIYREGVLISGAGFDDQYWRLLTSGFLHQSVPH 77
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA--MSYRFCNSPAVGASGAIFGLV 244
L +N +SL IG +E+ G RYL +Y S + SA M+++ + GASGAI+GL+
Sbjct: 78 LAINMFSLYIIGADLERALGRGRYLAIYLVSLLGGSAAVMAFQSGVTATAGASGAIYGLM 137
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
G+ + ++R K +Q + VI N+V S I
Sbjct: 138 GALLILLLRV-------KAPVQTVLGVIAINIVISVTIPGI 171
>gi|227500934|ref|ZP_03930983.1| S54 family peptidase [Anaerococcus tetradius ATCC 35098]
gi|227216905|gb|EEI82299.1| S54 family peptidase [Anaerococcus tetradius ATCC 35098]
Length = 226
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 86/157 (54%), Gaps = 12/157 (7%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+ VN+ V+I D L+ +GA + L+ GQ+WR+ T+AF+H H++
Sbjct: 14 TTALMLVNIAVFIIMTLHGGSEDIDNLVRFGAMVKPLVKLGQWWRIFTAAFIHIGFFHIL 73
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGS 246
N Y L SIGP EK+ G R +L +Y + I + +Y F N+ + GAS +++G+ G
Sbjct: 74 FNMYFLYSIGPLFEKLYGSRNFLIIYLLAGIMGNLFTYAFASNNTVSAGASTSLYGIFG- 132
Query: 247 FAVFIM---RHRNILGG-GKEELQHLAKVIIFNMVCS 279
A+ +M R +IL G G L +A +++++ +
Sbjct: 133 LAIGLMINYRDDDILRGLGASFLSIIAINVVYSLFAT 169
>gi|120600057|ref|YP_964631.1| rhomboid family protein [Shewanella sp. W3-18-1]
gi|120560150|gb|ABM26077.1| Rhomboid family protein [Shewanella sp. W3-18-1]
Length = 523
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 80/153 (52%), Gaps = 11/153 (7%)
Query: 110 KNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDK--------LLLWGAK 161
+N+ E S L+ R G T +L+++N V+I + LL WGA
Sbjct: 305 RNTTSELQSWLEFIRPK--AGFMVTPVLMSLNAFVFIFMAWSSSHVIHFQSHFLLEWGAN 362
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+ G++WRL TS+F+H +AHL++N Y L +G +E + G R L VY S I +
Sbjct: 363 FRPNVLAGEWWRLVTSSFIHGGLAHLVLNLYGLFFVGTFIEPLLGKWRLLLVYLVSGILA 422
Query: 222 SAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMR 253
S S + ++ +VGASGAI GL G +++ +
Sbjct: 423 SVASLCWYDATISVGASGAIMGLFGILVIWVWK 455
>gi|419710435|ref|ZP_14237901.1| rhomboid family protein [Mycobacterium abscessus M93]
gi|382941267|gb|EIC65587.1| rhomboid family protein [Mycobacterium abscessus M93]
Length = 247
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 74/134 (55%), Gaps = 9/134 (6%)
Query: 131 RQW-TNILLAVNVLVYIAQFATQDKLLLWGAKI-------NSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + + G+++ + +G+ WR T+ FLH
Sbjct: 26 RAWITWALIAVNVLVYTATVSDGVDGDVTGSQLFRELVLYLPWVAEGELWRTVTTGFLHL 85
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
+ H+ VN SL IGP +E+ G +RY +Y ++ + SSA + N+ GASGAI+
Sbjct: 86 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAAAMWLSPNAVVAGASGAIY 145
Query: 242 GLVGSFAVFIMRHR 255
GL+G+ V +R R
Sbjct: 146 GLLGAALVLSLRER 159
>gi|421036084|ref|ZP_15499101.1| rhomboid family protein [Mycobacterium abscessus 3A-0930-S]
gi|392219936|gb|EIV45460.1| rhomboid family protein [Mycobacterium abscessus 3A-0930-S]
Length = 252
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 74/134 (55%), Gaps = 9/134 (6%)
Query: 131 RQW-TNILLAVNVLVYIAQFATQDKLLLWGAKI-------NSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + + G+++ + +G+ WR T+ FLH
Sbjct: 31 RAWITWALIAVNVLVYTATVSDGVGGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 90
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
+ H+ VN SL IGP +E+ G +RY +Y ++ + SSA + N+ GASGAI+
Sbjct: 91 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAAAMWLSPNAVVAGASGAIY 150
Query: 242 GLVGSFAVFIMRHR 255
GL+G+ V +R R
Sbjct: 151 GLLGAALVLSLRER 164
>gi|441518028|ref|ZP_20999756.1| hypothetical protein GOHSU_24_00060 [Gordonia hirsuta DSM 44140 =
NBRC 16056]
gi|441455057|dbj|GAC57717.1| hypothetical protein GOHSU_24_00060 [Gordonia hirsuta DSM 44140 =
NBRC 16056]
Length = 244
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 70/122 (57%), Gaps = 16/122 (13%)
Query: 137 LLAVNVLVYIAQFATQDKLLLWGAKINSLIDKG----------QFWRLATSAFLHANIAH 186
L+AVN++++ A A AK +S+++ G ++WRL TS FLH+++ H
Sbjct: 30 LIAVNLVLFAAAMAQSVG----NAKASSIMNDGALYSNRHLVFEYWRLLTSGFLHSSVPH 85
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA--VGASGAIFGLV 244
L +N SL +G +E++ GP RYL +Y S SA F PA VGASGAI+GL+
Sbjct: 86 LALNMISLYIVGRELERLFGPARYLTIYLMSLFGGSAAVLLFQQGPAPTVGASGAIYGLM 145
Query: 245 GS 246
G+
Sbjct: 146 GA 147
>gi|333395939|ref|ZP_08477756.1| membrane-associated serine protease [Lactobacillus coryniformis
subsp. coryniformis KCTC 3167]
gi|420145094|ref|ZP_14652570.1| Membrane-associated serine protease [Lactobacillus coryniformis
subsp. coryniformis CECT 5711]
gi|398403329|gb|EJN56584.1| Membrane-associated serine protease [Lactobacillus coryniformis
subsp. coryniformis CECT 5711]
Length = 223
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 61/104 (58%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK+N LI +GQ+WRL FLH+ + H+ VN +L IG +E + G R+
Sbjct: 39 NVLVFFGAKVNILIQQGQWWRLIMPIFLHSGLMHIAVNSVTLYFIGMQIESLFGHWRFTL 98
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRN 256
+Y S I + S+ F +VGAS A+FGL G+F + + R
Sbjct: 99 IYLLSGIVGNIASFVFNMGISVGASTALFGLFGAFFMLVEAFRQ 142
>gi|386841294|ref|YP_006246352.1| hypothetical protein SHJG_5211 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374101595|gb|AEY90479.1| hypothetical protein SHJG_5211 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
Length = 281
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 88/167 (52%), Gaps = 20/167 (11%)
Query: 131 RQWTNILLAVNVLVYIAQFATQ---DKLLLWGA------KINSLIDKGQFWRLATSAFLH 181
R T IL+ +N+ V+IA A D L+L+GA S + G+++R TS F H
Sbjct: 69 RLLTKILIGINLAVFIAVQADSSLLDHLVLYGAWPPKPFAPTSGVAGGEWYRFVTSMFAH 128
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP---AVGASG 238
H+ N SL IG +E G RYL VYF S +A A++Y SP ++GASG
Sbjct: 129 QEYWHIGFNMLSLWWIGGPLEAALGRARYLAVYFVSGLAGGALTY-LLTSPQTASLGASG 187
Query: 239 AIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
AIFGL G+ AV +MR N +++ + +++ N++ + NI
Sbjct: 188 AIFGLFGATAV-LMRRLNY------DMRPVIALLVINLIFTFGVGNI 227
>gi|153005609|ref|YP_001379934.1| rhomboid family protein [Anaeromyxobacter sp. Fw109-5]
gi|152029182|gb|ABS26950.1| Rhomboid family protein [Anaeromyxobacter sp. Fw109-5]
Length = 369
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 61/105 (58%)
Query: 150 ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRR 209
A + L+ GA S + G+ WRL T+ FLH HL +N +L GP +E+ GP R
Sbjct: 46 ADPELLVRLGALERSRVWAGEPWRLVTAGFLHGGWHHLAMNLGALLLAGPIVERGLGPAR 105
Query: 210 YLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRH 254
+LG+Y +S + +SA S ++ GASG +FG+VG+ V +RH
Sbjct: 106 FLGLYLASVVGASAASLLAHDAVVAGASGGVFGVVGALLVLELRH 150
>gi|146292013|ref|YP_001182437.1| rhomboid family protein [Shewanella putrefaciens CN-32]
gi|145563703|gb|ABP74638.1| Rhomboid family protein [Shewanella putrefaciens CN-32]
Length = 523
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 80/153 (52%), Gaps = 11/153 (7%)
Query: 110 KNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDK--------LLLWGAK 161
+N+ E S L+ R G T +L+++N V+I + LL WGA
Sbjct: 305 RNTTSELQSWLEFIRPK--AGFMVTPVLMSLNAFVFIFMAWSSSHVIHFQSHFLLEWGAN 362
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+ G++WRL TS+F+H +AHL++N Y L +G +E + G R L VY S I +
Sbjct: 363 FRPNVLAGEWWRLVTSSFIHGGLAHLVLNLYGLFFVGTFIEPLLGKWRLLLVYLVSGILA 422
Query: 222 SAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMR 253
S S + ++ +VGASGAI GL G +++ +
Sbjct: 423 SVASLCWYDATISVGASGAIMGLFGILVIWVWK 455
>gi|451794589|gb|AGF64638.1| hypothetical protein SHJGH_4975 [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 295
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 88/167 (52%), Gaps = 20/167 (11%)
Query: 131 RQWTNILLAVNVLVYIAQFATQ---DKLLLWGA------KINSLIDKGQFWRLATSAFLH 181
R T IL+ +N+ V+IA A D L+L+GA S + G+++R TS F H
Sbjct: 83 RLLTKILIGINLAVFIAVQADSSLLDHLVLYGAWPPKPFAPTSGVAGGEWYRFVTSMFAH 142
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP---AVGASG 238
H+ N SL IG +E G RYL VYF S +A A++Y SP ++GASG
Sbjct: 143 QEYWHIGFNMLSLWWIGGPLEAALGRARYLAVYFVSGLAGGALTY-LLTSPQTASLGASG 201
Query: 239 AIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
AIFGL G+ AV +MR N +++ + +++ N++ + NI
Sbjct: 202 AIFGLFGATAV-LMRRLNY------DMRPVIALLVINLIFTFGVGNI 241
>gi|420912660|ref|ZP_15375972.1| rhomboid family protein [Mycobacterium abscessus 6G-0125-R]
gi|420919114|ref|ZP_15382417.1| rhomboid family protein [Mycobacterium abscessus 6G-0125-S]
gi|420924284|ref|ZP_15387580.1| rhomboid family protein [Mycobacterium abscessus 6G-0728-S]
gi|420929944|ref|ZP_15393223.1| rhomboid family protein [Mycobacterium abscessus 6G-1108]
gi|420969638|ref|ZP_15432841.1| rhomboid family protein [Mycobacterium abscessus 3A-0810-R]
gi|420980281|ref|ZP_15443458.1| rhomboid family protein [Mycobacterium abscessus 6G-0212]
gi|420985667|ref|ZP_15448834.1| rhomboid family protein [Mycobacterium abscessus 6G-0728-R]
gi|421009768|ref|ZP_15472877.1| rhomboid family protein [Mycobacterium abscessus 3A-0119-R]
gi|421010496|ref|ZP_15473600.1| rhomboid family protein [Mycobacterium abscessus 3A-0122-R]
gi|421020930|ref|ZP_15483986.1| rhomboid family protein [Mycobacterium abscessus 3A-0122-S]
gi|421025708|ref|ZP_15488751.1| rhomboid family protein [Mycobacterium abscessus 3A-0731]
gi|421031230|ref|ZP_15494260.1| rhomboid family protein [Mycobacterium abscessus 3A-0930-R]
gi|392112005|gb|EIU37775.1| rhomboid family protein [Mycobacterium abscessus 6G-0125-S]
gi|392114654|gb|EIU40423.1| rhomboid family protein [Mycobacterium abscessus 6G-0125-R]
gi|392126932|gb|EIU52683.1| rhomboid family protein [Mycobacterium abscessus 6G-1108]
gi|392128937|gb|EIU54687.1| rhomboid family protein [Mycobacterium abscessus 6G-0728-S]
gi|392164559|gb|EIU90248.1| rhomboid family protein [Mycobacterium abscessus 6G-0212]
gi|392170663|gb|EIU96341.1| rhomboid family protein [Mycobacterium abscessus 6G-0728-R]
gi|392195374|gb|EIV20993.1| rhomboid family protein [Mycobacterium abscessus 3A-0119-R]
gi|392206653|gb|EIV32236.1| rhomboid family protein [Mycobacterium abscessus 3A-0122-S]
gi|392209231|gb|EIV34803.1| rhomboid family protein [Mycobacterium abscessus 3A-0731]
gi|392216607|gb|EIV42150.1| rhomboid family protein [Mycobacterium abscessus 3A-0122-R]
gi|392219112|gb|EIV44637.1| rhomboid family protein [Mycobacterium abscessus 3A-0930-R]
gi|392245294|gb|EIV70772.1| rhomboid family protein [Mycobacterium abscessus 3A-0810-R]
Length = 247
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 74/134 (55%), Gaps = 9/134 (6%)
Query: 131 RQW-TNILLAVNVLVYIAQFATQDKLLLWGAKI-------NSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + + G+++ + +G+ WR T+ FLH
Sbjct: 26 RAWITWALIAVNVLVYTATVSDGVGGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 85
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
+ H+ VN SL IGP +E+ G +RY +Y ++ + SSA + N+ GASGAI+
Sbjct: 86 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAAAMWLSPNAVVAGASGAIY 145
Query: 242 GLVGSFAVFIMRHR 255
GL+G+ V +R R
Sbjct: 146 GLLGAALVLSLRER 159
>gi|357019099|ref|ZP_09081357.1| rhomboid family protein [Mycobacterium thermoresistibile ATCC
19527]
gi|356481160|gb|EHI14270.1| rhomboid family protein [Mycobacterium thermoresistibile ATCC
19527]
Length = 281
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 14/155 (9%)
Query: 134 TNILLAVNVLVYIAQFATQ---DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+AVNVL+Y+ Q A+ + +LW + + G+++RL TSAFLH + HL+ N
Sbjct: 77 TYTLIAVNVLMYVLQRASTGFTEAFVLWAPAVAA----GEYYRLVTSAFLHFGLMHLLFN 132
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
++L IG +E G R+ +Y SA+ S + Y +P GASGA+FGL A +
Sbjct: 133 MFALYVIGGPLEAALGRLRFGLLYALSALGGSVLVYLLAMNPTAGASGAVFGLFA--ATY 190
Query: 251 IMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
++ R L +++ + +I+ N+V + I
Sbjct: 191 VVAKRLNL-----DVRFVTGLIVVNLVITFVVPGI 220
>gi|419758894|ref|ZP_14285206.1| membrane-associated serine protease [Oenococcus oeni AWRIB304]
gi|419857800|ref|ZP_14380503.1| membrane-associated serine protease [Oenococcus oeni AWRIB202]
gi|421185357|ref|ZP_15642768.1| membrane-associated serine protease [Oenococcus oeni AWRIB318]
gi|421188834|ref|ZP_15646166.1| membrane-associated serine protease [Oenococcus oeni AWRIB419]
gi|421189623|ref|ZP_15646937.1| membrane-associated serine protease [Oenococcus oeni AWRIB422]
gi|421190919|ref|ZP_15648203.1| membrane-associated serine protease [Oenococcus oeni AWRIB548]
gi|421193560|ref|ZP_15650806.1| membrane-associated serine protease [Oenococcus oeni AWRIB553]
gi|421195397|ref|ZP_15652605.1| membrane-associated serine protease [Oenococcus oeni AWRIB568]
gi|421197510|ref|ZP_15654685.1| membrane-associated serine protease [Oenococcus oeni AWRIB576]
gi|399904349|gb|EJN91805.1| membrane-associated serine protease [Oenococcus oeni AWRIB304]
gi|399964167|gb|EJN98821.1| membrane-associated serine protease [Oenococcus oeni AWRIB419]
gi|399964538|gb|EJN99179.1| membrane-associated serine protease [Oenococcus oeni AWRIB318]
gi|399971719|gb|EJO05958.1| membrane-associated serine protease [Oenococcus oeni AWRIB553]
gi|399972713|gb|EJO06912.1| membrane-associated serine protease [Oenococcus oeni AWRIB422]
gi|399973615|gb|EJO07780.1| membrane-associated serine protease [Oenococcus oeni AWRIB548]
gi|399975119|gb|EJO09187.1| membrane-associated serine protease [Oenococcus oeni AWRIB576]
gi|399975822|gb|EJO09857.1| membrane-associated serine protease [Oenococcus oeni AWRIB568]
gi|410497271|gb|EKP88746.1| membrane-associated serine protease [Oenococcus oeni AWRIB202]
Length = 241
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 77/130 (59%), Gaps = 8/130 (6%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
L+L G +++SLI KGQ++RL T FLH+++ H+ N ++L GP +EK+ G +YL
Sbjct: 54 QSLILLGGQVSSLILKGQWYRLFTPIFLHSSLMHIFSNMFTLIIFGPFVEKLFGKTKYLL 113
Query: 213 VYFSSAIASSAMSYRFCNSP---AVGASGAIFGLVGSFAVFIMRHRN--ILGGGKEELQH 267
+Y S + + ++ F +P +VGASGA+FGL G+ +RN I K +L
Sbjct: 114 IYLLSGLWGNLLTLIFDPNPNIVSVGASGALFGLFGAMISIAWFNRNNPIF---KRQLVV 170
Query: 268 LAKVIIFNMV 277
A + +FN++
Sbjct: 171 FAALALFNLI 180
>gi|423216154|ref|ZP_17202679.1| hypothetical protein HMPREF1074_04211 [Bacteroides xylanisolvens
CL03T12C04]
gi|392691005|gb|EIY84256.1| hypothetical protein HMPREF1074_04211 [Bacteroides xylanisolvens
CL03T12C04]
Length = 584
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 66/131 (50%), Gaps = 9/131 (6%)
Query: 134 TNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +N+LV+I A+ LL WGA L G +WR T F+H
Sbjct: 156 TPILIDLNLLVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRAVTCNFIHIGAF 215
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLV 244
HL++N Y+ +G +E + G RR Y + + S+ S Y + + GASGAIFGL
Sbjct: 216 HLLMNMYAFMYVGLLLEGLIGSRRMFMSYLLTGLCSAVFSLYMHGETISAGASGAIFGLY 275
Query: 245 GSFAVFIMRHR 255
G F F+ HR
Sbjct: 276 GIFLAFLFFHR 286
>gi|116619460|ref|YP_821616.1| rhomboid family protein [Candidatus Solibacter usitatus Ellin6076]
gi|116222622|gb|ABJ81331.1| Rhomboid family protein [Candidatus Solibacter usitatus Ellin6076]
Length = 280
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 75/140 (53%), Gaps = 14/140 (10%)
Query: 134 TNILLAVNVLVYI--AQFATQD------------KLLLWGAKINSLIDKGQFWRLATSAF 179
T I+L +N+ +YI A F+ Q L+ +GAK + L+ +G++WRL T+ F
Sbjct: 57 TTIILLMNIGLYIVTAVFSLQSGNSDAFFNLDGRTLIAFGAKFDPLLAQGEWWRLVTAGF 116
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGA 239
LH + H+ +N ++L +G +E+ G R +YF + + S + + +VGAS
Sbjct: 117 LHGGMLHIFMNTWALFGLGAQVEETFGSSRMWVIYFVATVTGFYASAVWSPALSVGASAG 176
Query: 240 IFGLVGSFAVFIMRHRNILG 259
IFGL+G+ F +RH G
Sbjct: 177 IFGLLGAMIAFGVRHHGFTG 196
>gi|116490957|ref|YP_810501.1| membrane-associated serine protease [Oenococcus oeni PSU-1]
gi|290890431|ref|ZP_06553506.1| hypothetical protein AWRIB429_0896 [Oenococcus oeni AWRIB429]
gi|419859592|ref|ZP_14382246.1| membrane-associated serine protease [Oenococcus oeni DSM 20252 =
AWRIB129]
gi|116091682|gb|ABJ56836.1| Membrane-associated serine protease [Oenococcus oeni PSU-1]
gi|290479827|gb|EFD88476.1| hypothetical protein AWRIB429_0896 [Oenococcus oeni AWRIB429]
gi|410496609|gb|EKP88092.1| membrane-associated serine protease [Oenococcus oeni DSM 20252 =
AWRIB129]
Length = 236
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 77/130 (59%), Gaps = 8/130 (6%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
L+L G +++SLI KGQ++RL T FLH+++ H+ N ++L GP +EK+ G +YL
Sbjct: 49 QSLILLGGQVSSLILKGQWYRLFTPIFLHSSLMHIFSNMFTLIIFGPFVEKLFGKTKYLL 108
Query: 213 VYFSSAIASSAMSYRFCNSP---AVGASGAIFGLVGSFAVFIMRHRN--ILGGGKEELQH 267
+Y S + + ++ F +P +VGASGA+FGL G+ +RN I K +L
Sbjct: 109 IYLLSGLWGNLLTLIFDPNPNIVSVGASGALFGLFGAMISIAWFNRNNPIF---KRQLVV 165
Query: 268 LAKVIIFNMV 277
A + +FN++
Sbjct: 166 FAALALFNLI 175
>gi|160901697|ref|YP_001567278.1| rhomboid family protein [Petrotoga mobilis SJ95]
gi|160359341|gb|ABX30955.1| Rhomboid family protein [Petrotoga mobilis SJ95]
Length = 226
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 75/124 (60%), Gaps = 9/124 (7%)
Query: 131 RQWTNILLAVNVLVYI--------AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
R T+ L+ +NVL++I + F+ +L+GA++ +LI G+++RL TS F+H
Sbjct: 3 RNVTSYLIMLNVLIFIMMFLFGGLSAFSNPRIYILFGAQLGNLITAGEWFRLITSMFVHG 62
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
+ H+ N +L +G +E+ G R++ +Y S I + +++ F N+ +VGASGAIF
Sbjct: 63 GLFHIFFNMIALFYVGNIVERAYGKERFISIYMLSGIFGNLLTHLFLPNAISVGASGAIF 122
Query: 242 GLVG 245
GL+G
Sbjct: 123 GLIG 126
>gi|323490567|ref|ZP_08095773.1| hypothetical protein GPDM_14436 [Planococcus donghaensis MPA1U2]
gi|323395833|gb|EGA88673.1| hypothetical protein GPDM_14436 [Planococcus donghaensis MPA1U2]
Length = 202
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 4/119 (3%)
Query: 137 LLAVNVLVYIAQF--ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
L+A+N+LVY+ + + + +G N I +GQ+WR T FLH + HL+ N +SL
Sbjct: 21 LIALNLLVYVLMWLPSLGQWIYFYGVGSNFYIAEGQWWRFFTPMFLHNGVMHLLFNMFSL 80
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFAVFI 251
GP +E++ G R+ +Y + +SA +Y + VGASGAIFG+ G+F +
Sbjct: 81 FLFGPELERLTGKVRFTTIYLLAGFFASAATYFLQPLDYFHVGASGAIFGVFGAFGALV 139
>gi|440748391|ref|ZP_20927644.1| Rhomboid family protein [Mariniradius saccharolyticus AK6]
gi|436483215|gb|ELP39283.1| Rhomboid family protein [Mariniradius saccharolyticus AK6]
Length = 517
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 66/122 (54%), Gaps = 9/122 (7%)
Query: 134 TNILLAVNVLVYIAQF--------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T+ILL N+L+++ +LL WGA S G +WRL +S FLH I
Sbjct: 319 TSILLDFNILIFLLMTFSGVHIISPNGIELLEWGANRRSETTGGDWWRLVSSMFLHGGIM 378
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLV 244
HL +N Y L +E + G +Y +YF+S I S S Y + N+ +VGASGAIFGL
Sbjct: 379 HLFLNIYGLVIAALFVEPVFGRIKYFILYFASGICGSLASIYWYENTISVGASGAIFGLY 438
Query: 245 GS 246
G+
Sbjct: 439 GA 440
>gi|297200957|ref|ZP_06918354.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
gi|197712264|gb|EDY56298.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
Length = 294
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 18/166 (10%)
Query: 131 RQWTNILLAVNVLVYIA---QFATQDKLLLWGA------KINSLIDKGQFWRLATSAFLH 181
R +T IL+ +NV V+IA + + L L GA + + GQ++RL TS F H
Sbjct: 82 RLFTKILIGINVAVFIAIQAKASLATDLSLVGAWPPAPFQPTEGVADGQYYRLVTSMFAH 141
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGA 239
I H+ N SL +G +E G RYL VYF S +A A++Y ++ +GASGA
Sbjct: 142 QEIWHIGFNMMSLWWLGGPLEAALGRARYLTVYFVSGLAGGALAYLLASPSTATLGASGA 201
Query: 240 IFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
IFGL G+ AV +MR N +L+ + +++ N++ + +++ I
Sbjct: 202 IFGLFGATAV-LMRRLNY------DLRPIIALLVINLIFTFSWSGI 240
>gi|381208752|ref|ZP_09915823.1| hypothetical protein LGrbi_02305 [Lentibacillus sp. Grbi]
Length = 252
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Query: 158 WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
WG IN I +GQ+WRL TS FLHA + H++ N ++L GP +E++ G +++ Y +
Sbjct: 47 WGMGINFAISQGQYWRLITSIFLHAGLMHVLFNSFALVLFGPALEQMLGKVKFITAYLGA 106
Query: 218 AIASSAMSYRFCNSPA----VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
+ + + F PA VGASGAI+GL G +A + ++++ ++ + VI
Sbjct: 107 GLIGNLAT--FLLGPALYSHVGASGAIYGLFGIYAFMVAFRKHLIDPSSSQIITIILVI 163
>gi|433633128|ref|YP_007266755.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070017]
gi|432164721|emb|CCK62183.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070017]
Length = 249
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 80/153 (52%), Gaps = 18/153 (11%)
Query: 114 HEGTSHLDTARTNLFIGRQ------WTNILLAVNVLVYIAQFAT---QDKLLLWGAKINS 164
EG + RT F GRQ T L+++NVLV++ Q + +L LW + S
Sbjct: 15 REGARTVRQPRTQ-FGGRQRSATPVVTYTLISLNVLVFVMQVTVMGLERQLALWPPGVAS 73
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
GQ +RL TSAFLH HL++N ++L +GP +E G R+ +Y SA+ S +
Sbjct: 74 ----GQTYRLVTSAFLHYGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSALGGSVL 129
Query: 225 SYRFC--NSPAVGASGAIFGLVGSFAVFIMRHR 255
Y N+ GASGA+FGL G A F++ R
Sbjct: 130 VYLIAPLNTATAGASGAVFGLFG--ATFMVARR 160
>gi|410460563|ref|ZP_11314238.1| hypothetical protein BAZO_14959 [Bacillus azotoformans LMG 9581]
gi|409926821|gb|EKN63973.1| hypothetical protein BAZO_14959 [Bacillus azotoformans LMG 9581]
Length = 507
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 70/127 (55%), Gaps = 6/127 (4%)
Query: 134 TNILLAVNVLVYI------AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
T +L+ +N+++++ + L+ +GAK N I +G +WR T FLH HL
Sbjct: 178 TYVLVVINLIMFLLLELVGSGSTDLSTLIKFGAKYNPAILEGDWWRFITPMFLHIGFLHL 237
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
++N +L +G ++E+I G R+L +YF++ I S+ F + GASGAIFG G+
Sbjct: 238 LMNTLALYYLGISVERIYGTWRFLILYFAAGITGGVASFAFTTQVSAGASGAIFGCFGAL 297
Query: 248 AVFIMRH 254
F + H
Sbjct: 298 LYFGVVH 304
>gi|408530693|emb|CCK28867.1| integral membrane protein [Streptomyces davawensis JCM 4913]
Length = 296
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 71/132 (53%), Gaps = 12/132 (9%)
Query: 134 TNILLAVNVLVYIAQFATQDKL-----LLWGAKINSLID-----KGQFWRLATSAFLHAN 183
T IL+ + Y+ Q A D L+ A + D +GQ +RL TS FLH +
Sbjct: 85 TKILIGACLAAYLVQMAVGDSFTDNFSLIGQAYVPHFGDVEGVAEGQSYRLLTSMFLHGS 144
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIF 241
+ HL+ N SL +G +E G RYL +YF S +A SA++Y N+ +GASGAIF
Sbjct: 145 VIHLLFNMLSLWWLGGPLEAALGRARYLALYFVSGLAGSALAYLLAEPNTATLGASGAIF 204
Query: 242 GLVGSFAVFIMR 253
GL G+ AV + R
Sbjct: 205 GLFGATAVLMRR 216
>gi|397678270|ref|YP_006519805.1| Rhomboid protease gluP [Mycobacterium massiliense str. GO 06]
gi|395456535|gb|AFN62198.1| Rhomboid protease gluP [Mycobacterium massiliense str. GO 06]
Length = 287
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 74/134 (55%), Gaps = 9/134 (6%)
Query: 131 RQW-TNILLAVNVLVYIAQFATQDKLLLWGAKI-------NSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + + G+++ + +G+ WR T+ FLH
Sbjct: 66 RAWITWALIAVNVLVYTATVSDGVDGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 125
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
+ H+ VN SL IGP +E+ G +RY +Y ++ + SSA + N+ GASGAI+
Sbjct: 126 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAAAMWLSPNAVVAGASGAIY 185
Query: 242 GLVGSFAVFIMRHR 255
GL+G+ V +R R
Sbjct: 186 GLLGAALVLSLRER 199
>gi|15613080|ref|NP_241383.1| hypothetical protein BH0517 [Bacillus halodurans C-125]
gi|10173130|dbj|BAB04236.1| BH0517 [Bacillus halodurans C-125]
Length = 248
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 74/152 (48%), Gaps = 19/152 (12%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
G N + +G++WRL T FLH +I HL+ N ++L GP +E++ G ++L VY S
Sbjct: 45 GVGFNLAVSQGEYWRLITPVFLHVSIGHLVFNSFALVIFGPALERMLGKGKFLFVYLLSG 104
Query: 219 IASSAMSYRFCNSPA---VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI--- 272
++ +Y +GASGAIFGL G F ++ ++++ +L +I
Sbjct: 105 FIANVATYYLGGLAYPYHLGASGAIFGLFGIFVYMVIYRKDLIDPANTQLVITIIIIGLV 164
Query: 273 -------------IFNMVCSAAFANIVKIESR 291
+F M+ AA A IV ++R
Sbjct: 165 MTFLSSNINVFAHLFGMIGGAALAPIVLAKAR 196
>gi|169627133|ref|YP_001700782.1| rhomboid family protein [Mycobacterium abscessus ATCC 19977]
gi|169239100|emb|CAM60128.1| Rhomboid family protein [Mycobacterium abscessus]
Length = 287
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 74/134 (55%), Gaps = 9/134 (6%)
Query: 131 RQW-TNILLAVNVLVYIAQFATQDKLLLWGAKI-------NSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + + G+++ + +G+ WR T+ FLH
Sbjct: 66 RAWITWALIAVNVLVYTATVSDGVGGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 125
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
+ H+ VN SL IGP +E+ G +RY +Y ++ + SSA + N+ GASGAI+
Sbjct: 126 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAAAMWLSPNAVVAGASGAIY 185
Query: 242 GLVGSFAVFIMRHR 255
GL+G+ V +R R
Sbjct: 186 GLLGAALVLSLRER 199
>gi|150020441|ref|YP_001305795.1| rhomboid family protein [Thermosipho melanesiensis BI429]
gi|149792962|gb|ABR30410.1| Rhomboid family protein [Thermosipho melanesiensis BI429]
Length = 223
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 156 LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
LL+GA+ L+ GQ++R+ T+ F+H HL+ N Y+L +G +E + G ++L YF
Sbjct: 35 LLFGAQYGPLVSSGQWYRIVTAMFVHGGFIHLVFNMYALYFLGRIVENVYGTDKFLFFYF 94
Query: 216 SSAIASS-AMSYRFCNSPAVGASGAIFGLVG 245
S+ I + A + + NS +VGASGAIFGLVG
Sbjct: 95 STGIIGNLATQFFYYNSFSVGASGAIFGLVG 125
>gi|449015504|dbj|BAM78906.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 364
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 83/153 (54%), Gaps = 11/153 (7%)
Query: 134 TNILLAVNVLVYIAQF----------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHAN 183
T ++ +N+L Y+A+ A + LL GAKINS I GQ WRL T FLH
Sbjct: 110 TTGIIGINILTYLAELYFEVEGKLSGANSNILLALGAKINSAIAAGQLWRLFTPIFLHGG 169
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGL 243
+ HL+ N Y+L +I E GP + +Y +S + +SY F +VGAS +IFGL
Sbjct: 170 LLHLLSNTYALYAISYECEMAYGPLAFAVIYLASGAWGNLLSYWFTPYLSVGASSSIFGL 229
Query: 244 VGSFAVFIMRHRNILG-GGKEELQHLAKVIIFN 275
++ V+++ + ILG + ++ L +++FN
Sbjct: 230 FSAYIVYLVNNYAILGRQARRQITVLVALVVFN 262
>gi|449439033|ref|XP_004137292.1| PREDICTED: uncharacterized protein LOC101206746 [Cucumis sativus]
Length = 477
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 87/163 (53%), Gaps = 11/163 (6%)
Query: 137 LLAVNVLVYIAQFATQDK---------LLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
L+++N+ V++ + A+ K L+GAKIN LI G++WRL T FLH+ + H+
Sbjct: 232 LVSINIAVFLFEVASPVKNSELQLFSLPSLYGAKINELILVGEWWRLVTPMFLHSGVLHV 291
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
++C++L + G + + GP + +Y ++ + S+ P VG +G +F ++G++
Sbjct: 292 ALSCWTLLTFGRQVCREYGPFTFFLIYVLGGVSGNLTSFLHTPDPTVGGTGPVFAMIGAW 351
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANIVKIES 290
+ ++++++ + L ++ V S+ +NI I+
Sbjct: 352 LSYQFQNKDVMTKDVSDKMFLKALV--AAVISSILSNIGPIDE 392
>gi|415886173|ref|ZP_11547996.1| serine peptidase [Bacillus methanolicus MGA3]
gi|387588826|gb|EIJ81147.1| serine peptidase [Bacillus methanolicus MGA3]
Length = 199
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 63/103 (61%), Gaps = 6/103 (5%)
Query: 160 AKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
A +N I G++WRL T LH+ +H++ N +SL GP +E+I G ++++ +YFSS I
Sbjct: 47 AGVNLYIAAGEYWRLVTPIVLHSGFSHMLFNSFSLVLFGPALERIIGKKKFMILYFSSGI 106
Query: 220 ASSAMSYRFCNSPA----VGASGAIFGLVGSFAVFIMRHRNIL 258
A++ + F P VG+SGAIFGL G + I+ +++L
Sbjct: 107 AANIAT--FLIKPLTFIHVGSSGAIFGLFGFYIAIILFKKHLL 147
>gi|227510498|ref|ZP_03940547.1| S54 family peptidase [Lactobacillus brevis subsp. gravesensis ATCC
27305]
gi|227190150|gb|EEI70217.1| S54 family peptidase [Lactobacillus brevis subsp. gravesensis ATCC
27305]
Length = 234
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 72/130 (55%), Gaps = 10/130 (7%)
Query: 128 FIGR-----QWTNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKGQFWRLATS 177
F+GR T LL + VLVY+ + L+ +GAK N LI G++WRL T
Sbjct: 14 FMGRLRDKPYMTYALLGIMVLVYLLMTISGGTENVANLVRFGAKYNPLIRAGEYWRLLTP 73
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGAS 237
F+H H+++N +L IG +E + G R+L ++ +S IA + S+ F S + GAS
Sbjct: 74 IFIHIGFTHILMNGITLYFIGQYVETLFGHWRFLLIFLASGIAGNLASFAFSPSLSAGAS 133
Query: 238 GAIFGLVGSF 247
+IFGL G+F
Sbjct: 134 TSIFGLFGAF 143
>gi|332686104|ref|YP_004455878.1| GlpG protein [Melissococcus plutonius ATCC 35311]
gi|332370113|dbj|BAK21069.1| GlpG protein, membrane protein of glp regulon [Melissococcus
plutonius ATCC 35311]
Length = 234
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 90/160 (56%), Gaps = 13/160 (8%)
Query: 134 TNILLAVNVLVYIA-QFATQDK----LLLWGAKINS--LIDKGQFWRLATSAFLHANIAH 186
T L+ + V++++A +F+ + L+ +GA + LI+K ++WRL T FLH H
Sbjct: 17 TYCLIGITVIIFLAMEFSGGSENSRVLIQFGALVRPYILINK-EYWRLFTPIFLHIGWMH 75
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLV 244
L++N +L IG +E+I G RYLG+Y S IA + +S+ F NS + GAS A+FGL
Sbjct: 76 LILNMVTLYYIGEQIERIYGHWRYLGIYLLSGIAGNVLSFSFGSLNSISAGASTALFGLF 135
Query: 245 GSFAVFIMRHRN---ILGGGKEELQHLAKVIIFNMVCSAA 281
G+F + +N IL ++ + +IFN+ S+
Sbjct: 136 GAFVILGKHFKNNPAILEMVRQYTIFIMINLIFNLFSSSV 175
>gi|390456491|ref|ZP_10242019.1| rhomboid protease gluP Intramembrane serine protease [Paenibacillus
peoriae KCTC 3763]
Length = 207
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 12/162 (7%)
Query: 134 TNILLAVNVLVYIA---QFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T ++L +N++++I Q +Q+ L L +GA IN Q WR ++ FLHA HL+
Sbjct: 19 TCLILLINIVMFIVLTVQGGSQNSLTLIRYGALINEAPFTDQLWRYVSAMFLHAGFDHLL 78
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA-----VGASGAIFGL 243
N +++ P +E++ G RY+ +Y + I + MS N A VGASGAI+G+
Sbjct: 79 FNSFAILVFAPPLERLLGSLRYVLLYLVTGIVGNVMSIAHYNMVAETTVSVGASGAIYGI 138
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
G+F + R+ + + L ++ F ++ S A ANI
Sbjct: 139 YGAFLYVALFQRSFMDDASR--KTLYTLLGFGILFSFAVANI 178
>gi|347534329|ref|YP_004840999.1| hypothetical protein LSA_06440 [Lactobacillus sanfranciscensis TMW
1.1304]
gi|345504385|gb|AEN99067.1| hypothetical protein LSA_06440 [Lactobacillus sanfranciscensis TMW
1.1304]
Length = 223
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 60/107 (56%)
Query: 150 ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRR 209
+ + L+ +GA+ N LI GQ WRL T F+H HL++N L +G +EK G R
Sbjct: 33 SNNNVLIEFGAEYNPLIKAGQIWRLITPIFIHIGYQHLILNMIVLYFLGSIIEKFYGHFR 92
Query: 210 YLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRN 256
YL ++ S I + S+ F N + G+S +IFGL G++ V + +N
Sbjct: 93 YLIIFLVSGIVGNLFSFAFENGISAGSSTSIFGLFGAYFVLYLNLKN 139
>gi|357412396|ref|YP_004924132.1| rhomboid family protein [Streptomyces flavogriseus ATCC 33331]
gi|320009765|gb|ADW04615.1| Rhomboid family protein [Streptomyces flavogriseus ATCC 33331]
Length = 300
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 91/160 (56%), Gaps = 21/160 (13%)
Query: 131 RQWTNILLAVNVLVYI---AQFATQDKLLLWG-AKINSL------IDKGQFWRLATSAFL 180
R T IL+ +N+ V++ A A +D LLL+G A ++ + +GQ++RL TS FL
Sbjct: 86 RLITKILIGINLAVFVGVLAHPALRDDLLLFGRAYVDERSAGYQGVAEGQWYRLVTSTFL 145
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA---VGAS 237
H + H+ N L +G +E G RYL +Y S +A SA++Y + PA +GAS
Sbjct: 146 HQEVWHIAFNMLGLWWLGGPLESALGRARYLALYLLSGLAGSALTYLIAD-PAQGTLGAS 204
Query: 238 GAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMV 277
G++FGL+G+ AV +MR N +++ + +++ N++
Sbjct: 205 GSVFGLLGATAV-LMRRMNY------DMRPVIALLVVNLI 237
>gi|365902867|ref|ZP_09440690.1| membrane-associated serine protease [Lactobacillus malefermentans
KCTC 3548]
Length = 226
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 71/115 (61%), Gaps = 2/115 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
I++ V +L+ + +T +L+ +GAK++SLI GQ+WRL T FLH H+++N +
Sbjct: 20 GIMVIVFLLMTVMGGSTNTYVLIQFGAKVSSLIQAGQWWRLFTPVFLHIGFEHILLNGIT 79
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSF 247
L +G +E+I G RY ++ +AI + S+ F NS + GAS AIFGL G+F
Sbjct: 80 LYFLGLQIERIFGHWRYFIIFVVTAIGGNLASFVFSPNSLSAGASTAIFGLFGAF 134
>gi|375308022|ref|ZP_09773309.1| rhomboid family protein [Paenibacillus sp. Aloe-11]
gi|375080353|gb|EHS58574.1| rhomboid family protein [Paenibacillus sp. Aloe-11]
Length = 207
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 12/162 (7%)
Query: 134 TNILLAVNVLVYIA---QFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T ++L +N++++I Q +Q+ L L +GA IN Q WR ++ FLHA HL+
Sbjct: 19 TCLILLINIVMFIVLTVQGGSQNSLTLIRYGALINEAPFTDQLWRYVSAIFLHAGFDHLL 78
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA-----VGASGAIFGL 243
N +++ P +E++ G RY+ +Y + I + MS N A VGASGAI+G+
Sbjct: 79 FNSFAILVFAPPLERLLGSLRYVLLYLVTGIVGNVMSIAHYNMVAETTVSVGASGAIYGI 138
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
G+F + R+ + + L ++ F ++ S A ANI
Sbjct: 139 YGAFLYVALFQRSFMDDASR--KTLYTLLGFGILFSFAVANI 178
>gi|421186400|ref|ZP_15643793.1| membrane-associated serine protease [Oenococcus oeni AWRIB418]
gi|399967353|gb|EJO01835.1| membrane-associated serine protease [Oenococcus oeni AWRIB418]
Length = 241
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 79/133 (59%), Gaps = 9/133 (6%)
Query: 150 ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRR 209
+ Q +LL G +++SLI KGQ++RL T FLH+++ H+ N ++L GP +EK+ G +
Sbjct: 52 SIQSSILL-GGQVSSLILKGQWYRLFTPIFLHSSLMHIFSNMFTLIIFGPFVEKLFGKTK 110
Query: 210 YLGVYFSSAIASSAMSYRFCNSP---AVGASGAIFGLVGSFAVFIMRHRN--ILGGGKEE 264
YL +Y S + + ++ F +P +VGASGA+FGL G+ +RN I K +
Sbjct: 111 YLLIYLLSGLWGNLLTLIFDPNPNIVSVGASGALFGLFGAMISIAWFNRNNPIF---KRQ 167
Query: 265 LQHLAKVIIFNMV 277
L A + +FN++
Sbjct: 168 LVVFAALALFNLI 180
>gi|392531337|ref|ZP_10278474.1| membrane endopeptidase [Carnobacterium maltaromaticum ATCC 35586]
gi|414084202|ref|YP_006992910.1| rhomboid family protein [Carnobacterium maltaromaticum LMA28]
gi|412997786|emb|CCO11595.1| rhomboid family protein [Carnobacterium maltaromaticum LMA28]
Length = 236
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 67/127 (52%), Gaps = 5/127 (3%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+L+GAK N LI G +WRL T FLH HL VN + IG +EKI G R+ +Y
Sbjct: 46 LILFGAKFNPLIVMGDWWRLITPMFLHIGWLHLAVNSVCVYYIGTHLEKIMGHWRFALIY 105
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGG--KEELQHLAKVI 272
S +A + S+ F +S + GAS +IFGL FA +M G +E + +I
Sbjct: 106 LLSGVAGNVASFAFSDSVSAGASTSIFGL---FATTLMLAETFKGNAYYREIAKTFGILI 162
Query: 273 IFNMVCS 279
+FN +
Sbjct: 163 VFNFITG 169
>gi|163790986|ref|ZP_02185408.1| small hydrophobic molecule transporter protein, putative
[Carnobacterium sp. AT7]
gi|159873725|gb|EDP67807.1| small hydrophobic molecule transporter protein, putative
[Carnobacterium sp. AT7]
Length = 235
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 66/120 (55%), Gaps = 9/120 (7%)
Query: 134 TNILLAVNVLVYIAQFATQD-------KLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T + LA+ +L ++ T D LL +GAK N I G++WRL T FLH H
Sbjct: 19 TYLFLAIQILAFV--LMTLDGGSTNMVTLLKYGAKFNPYIVLGEWWRLITPMFLHIGFIH 76
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
L++N L +G +E + G R+ G+Y S IA + S+ F ++ + GAS A+FGL GS
Sbjct: 77 LLMNSVILYYLGEQLEGMFGHLRFAGIYLLSGIAGNLASFAFSDALSAGASTALFGLFGS 136
>gi|157363715|ref|YP_001470482.1| rhomboid family protein [Thermotoga lettingae TMO]
gi|157314319|gb|ABV33418.1| Rhomboid family protein [Thermotoga lettingae TMO]
Length = 228
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 73/122 (59%), Gaps = 10/122 (8%)
Query: 134 TNILLAVNVLVYIAQFA--------TQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANI 184
T+I+LAVNVL+ I F +Q L + +GA+ L+ G+++RL T+ F+H +
Sbjct: 7 THIILAVNVLIAIVMFFAGNLSAFRSQTYLFIRFGAQYGPLVSDGEWYRLITAIFVHGGL 66
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGL 243
HL+ N Y+L G +E + GP +++ Y ++ + + ++ F + +VGASG+IFGL
Sbjct: 67 LHLLFNSYALFYFGTIVESVYGPEKFIFSYLATGVVGNIATHLFYYRAISVGASGSIFGL 126
Query: 244 VG 245
VG
Sbjct: 127 VG 128
>gi|373859031|ref|ZP_09601763.1| Rhomboid family protein [Bacillus sp. 1NLA3E]
gi|372451122|gb|EHP24601.1| Rhomboid family protein [Bacillus sp. 1NLA3E]
Length = 522
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 5/123 (4%)
Query: 133 WTNILLAVNVLVYIAQ-----FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T ILL + + V + L+ +GAK N LI +GQ+WR T F+H HL
Sbjct: 184 FTYILLVIQIAVLLVMELNGGSTNSTTLIKFGAKFNPLIIEGQWWRFLTPIFIHIGFLHL 243
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
++N +L IGP +E+I G R++ +Y + S+ F + + GASGAIFG G+
Sbjct: 244 IMNSIALYYIGPLVERIYGNFRFILIYLFAGFTGVLASFAFSANLSAGASGAIFGCFGAL 303
Query: 248 AVF 250
F
Sbjct: 304 LYF 306
>gi|323340676|ref|ZP_08080928.1| rhomboid protease GluP [Lactobacillus ruminis ATCC 25644]
gi|335996819|ref|ZP_08562736.1| rhomboid family integral membrane protein [Lactobacillus ruminis
SPM0211]
gi|417974323|ref|ZP_12615144.1| rhomboid family integral membrane protein [Lactobacillus ruminis
ATCC 25644]
gi|323091799|gb|EFZ34419.1| rhomboid protease GluP [Lactobacillus ruminis ATCC 25644]
gi|335351889|gb|EGM53380.1| rhomboid family integral membrane protein [Lactobacillus ruminis
SPM0211]
gi|346329320|gb|EGX97618.1| rhomboid family integral membrane protein [Lactobacillus ruminis
ATCC 25644]
Length = 219
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 69/128 (53%), Gaps = 5/128 (3%)
Query: 134 TNILLAVNVLVYIAQ-FATQDK----LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +L+ +NV +Y+ FA + L+ +GA + G++WRL T+ FLH + HL
Sbjct: 11 TCVLIGINVAIYLLMTFAGGSQNPGVLVRFGANFAPYVSNGEYWRLLTAMFLHIGLEHLA 70
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
+N +L IG ++E I G R+ +Y S I A SY N + GAS A+FGL G++
Sbjct: 71 LNMLTLYFIGASLEPILGSVRFAVLYLVSGICGDAASYSLTNGLSAGASTALFGLFGAYL 130
Query: 249 VFIMRHRN 256
+ RN
Sbjct: 131 MLGESFRN 138
>gi|113969173|ref|YP_732966.1| rhomboid family protein [Shewanella sp. MR-4]
gi|113883857|gb|ABI37909.1| Rhomboid family protein [Shewanella sp. MR-4]
Length = 520
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 69/127 (54%), Gaps = 9/127 (7%)
Query: 134 TNILLAVNVLVYIAQ-FATQ-------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T ILL +N L+++ FA+Q LL WGA + L+ + Q WRL ++ FLH +
Sbjct: 331 TPILLYINSLIFVLMAFASQHFIAFPNSVLLDWGANLRQLVLEQQVWRLLSNVFLHGGLM 390
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLV 244
HL+ N Y L G +E + G R LGVY + +S S + + ++GASGAI GL
Sbjct: 391 HLVFNLYGLFFAGMFLEPLLGKWRLLGVYLCCGLVASLASIGWYEATISIGASGAIMGLF 450
Query: 245 GSFAVFI 251
G ++I
Sbjct: 451 GVLIIWI 457
>gi|333398096|ref|ZP_08479909.1| membrane-associated serine protease [Leuconostoc gelidum KCTC 3527]
gi|406599712|ref|YP_006745058.1| membrane-associated serine protease [Leuconostoc gelidum JB7]
gi|406371247|gb|AFS40172.1| membrane-associated serine protease [Leuconostoc gelidum JB7]
Length = 229
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 137 LLAVNVLVYIAQFATQ-------DKLLLWGAKINSLIDK-GQFWRLATSAFLHANIAHLM 188
+ + VLV+ A+F L+ +GAK I Q+WRL T FLHA + H++
Sbjct: 18 IFVLTVLVFFAEFLIGRGQTDNGSLLVAFGAKWGPYIKAYDQYWRLVTPIFLHAGVMHIL 77
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLVGSF 247
N +L IGP E+ G R++LG+Y I + MSY F + +VGAS A+FG+ G
Sbjct: 78 TNMLTLWFIGPIAEETFGSRKFLGLYLFGGIVGNIMSYLFAPLTVSVGASSALFGMFGGL 137
Query: 248 AVFIMRHRN 256
++ ++ ++
Sbjct: 138 ILYAIQFKH 146
>gi|347525683|ref|YP_004832431.1| rhomboid family integral membrane protein [Lactobacillus ruminis
ATCC 27782]
gi|345284642|gb|AEN78495.1| rhomboid family integral membrane protein [Lactobacillus ruminis
ATCC 27782]
Length = 219
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 69/128 (53%), Gaps = 5/128 (3%)
Query: 134 TNILLAVNVLVYIAQ-FATQDK----LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +L+ +NV +Y+ FA + L+ +GA + G++WRL T+ FLH + HL
Sbjct: 11 TCVLIGINVAIYLLMTFAGGSQNPSVLVRFGANFAPYVSNGEYWRLLTAMFLHIGLEHLA 70
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
+N +L IG ++E I G R+ +Y S I A SY N + GAS A+FGL G++
Sbjct: 71 LNMLTLYFIGASLEPILGSVRFAVLYLVSGICGDAASYSLTNGLSAGASTALFGLFGAYL 130
Query: 249 VFIMRHRN 256
+ RN
Sbjct: 131 MLGESFRN 138
>gi|288555804|ref|YP_003427739.1| rhomboid protein membrane-associated serine peptidase [Bacillus
pseudofirmus OF4]
gi|288546964|gb|ADC50847.1| rhomboid protein, putative membrane-associated serine peptidase
[Bacillus pseudofirmus OF4]
Length = 512
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 68/122 (55%), Gaps = 10/122 (8%)
Query: 136 ILLAVNVLVYIAQFATQD-------KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
+L+ + V+ YI + Q+ L+ +GAK N I +G++WR +S FLH HL
Sbjct: 189 LLIMIAVMFYIVE---QNGGSTHVLTLIEFGAKYNPAILEGEWWRFFSSMFLHIGFIHLF 245
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
+N +L +G +E++ G R++ +YF + + S S+ F A GASGAIFGL G+
Sbjct: 246 MNSLALFYLGGAVERMYGTSRFVLIYFIAGLIGSISSFAFNEQVAAGASGAIFGLFGALL 305
Query: 249 VF 250
F
Sbjct: 306 YF 307
>gi|433650924|ref|YP_007295926.1| putative membrane protein [Mycobacterium smegmatis JS623]
gi|433300701|gb|AGB26521.1| putative membrane protein [Mycobacterium smegmatis JS623]
Length = 287
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 82/148 (55%), Gaps = 16/148 (10%)
Query: 134 TNILLAVNVLVYIAQFAT---QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+A+NV++++ Q + Q L+L + + G ++RL TSAFLH IAHL+ N
Sbjct: 77 TYTLIAINVVMFVLQTVSPNLQSDLVLRSPSVAT----GDWYRLVTSAFLHYGIAHLLFN 132
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFA 248
Y+L +GP++E G R+ +Y SA+ S + Y N+ GASGA+FGL G A
Sbjct: 133 MYALYIMGPSLESWLGRLRFSALYAMSALGGSVLVYLLSPLNAATAGASGAVFGLFG--A 190
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNM 276
F++ R L +Q + +I+ N+
Sbjct: 191 AFVIGKRLNL-----NVQWVVGLIVLNL 213
>gi|407985614|ref|ZP_11166204.1| rhomboid family protein [Mycobacterium hassiacum DSM 44199]
gi|407372772|gb|EKF21798.1| rhomboid family protein [Mycobacterium hassiacum DSM 44199]
Length = 221
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 87/157 (55%), Gaps = 16/157 (10%)
Query: 134 TNILLAVNVLVYIAQFATQD--KLLLWGAKINSL-IDKGQFWRLATSAFLHANIAHLMVN 190
T +A++V++++ Q A QD +LL+ +NSL + GQ++RL TS FLH HL+ N
Sbjct: 67 TYTFIAISVVMFVVQLAAQDVERLLV----LNSLAVADGQWYRLLTSTFLHFGPVHLLFN 122
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFA 248
++L +GP +E G R+ +Y + A+ S + Y N+ GASGA+FGL +
Sbjct: 123 MWALYVVGPPLESALGRLRFTALYLAGALGGSVLVYLLAPLNAATAGASGAVFGLFAATL 182
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
V I R N+ +++ + +I+ N+V + + I
Sbjct: 183 V-IGRRLNL------DVRWVLALIVINLVITFSVPGI 212
>gi|296167263|ref|ZP_06849666.1| rhomboid family protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295897363|gb|EFG76966.1| rhomboid family protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 285
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 78/151 (51%), Gaps = 18/151 (11%)
Query: 116 GTSHLDTARTNLFIGRQ------WTNILLAVNVLVYIAQFAT---QDKLLLWGAKINSLI 166
G + RT F GRQ T L+A+NVL ++ Q A + +L LW +
Sbjct: 53 GARTIRQPRTR-FGGRQRSAAPVLTYALIAINVLAFVLQLAAGNLERQLALW----PPAV 107
Query: 167 DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSY 226
GQ++RLATSAFLH HL+ N ++L +GP +E G R+ +Y S + S + Y
Sbjct: 108 ADGQYYRLATSAFLHYGATHLVFNMWALYVVGPPLESWLGRLRFGALYAMSGLGGSVLVY 167
Query: 227 RF--CNSPAVGASGAIFGLVGSFAVFIMRHR 255
++ GASGAIFGL G A F++ R
Sbjct: 168 LVSPLDTATAGASGAIFGLFG--ATFVVGKR 196
>gi|152993649|ref|YP_001359370.1| hypothetical protein SUN_2072 [Sulfurovum sp. NBC37-1]
gi|151425510|dbj|BAF73013.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
Length = 192
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 66/120 (55%), Gaps = 2/120 (1%)
Query: 168 KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-Y 226
KG++WRL T+ FLH + H+++N SL IG ME + YL +Y S + +S Y
Sbjct: 20 KGEWWRLFTAMFLHGGMTHILMNMVSLYIIGRGMEMYFDTKSYLSIYLFSGLLGGLVSLY 79
Query: 227 RFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGG-GKEELQHLAKVIIFNMVCSAAFANI 285
S +GASGAIFG+ G+ A F + HR LG K ++ +I+ N+V + N+
Sbjct: 80 IHPASVGIGASGAIFGVFGALAGFFIAHRKHLGKHTKAFMKEFTVIIVINLVIGFSIPNV 139
>gi|114048685|ref|YP_739235.1| rhomboid family protein [Shewanella sp. MR-7]
gi|113890127|gb|ABI44178.1| Rhomboid family protein [Shewanella sp. MR-7]
Length = 520
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 69/127 (54%), Gaps = 9/127 (7%)
Query: 134 TNILLAVNVLVYIAQ-FATQ-------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T ILL +N L+++ FA+Q LL WGA + L+ + Q WRL ++ FLH +
Sbjct: 331 TPILLYINSLIFVLMAFASQHFIAFPNSVLLDWGANLRQLVLEQQVWRLLSNVFLHGGLM 390
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLV 244
HL+ N Y L G +E + G R LGVY + +S S + + ++GASGAI GL
Sbjct: 391 HLVFNLYGLFFAGMFLEPLLGKWRLLGVYVCCGLVASLASIGWYEATISIGASGAIMGLF 450
Query: 245 GSFAVFI 251
G ++I
Sbjct: 451 GVLIIWI 457
>gi|332880624|ref|ZP_08448298.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|357046009|ref|ZP_09107639.1| peptidase, S54 family [Paraprevotella clara YIT 11840]
gi|332681612|gb|EGJ54535.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|355531015|gb|EHH00418.1| peptidase, S54 family [Paraprevotella clara YIT 11840]
Length = 476
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 17/157 (10%)
Query: 134 TNILLAVNVLVYIAQ--------FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T +LL +N LV++A F LL WGA L G +WR+ T ++H +
Sbjct: 59 TPLLLDLNFLVFLAMCLSGVGIFFPDNVDLLHWGADFAPLTLTGDYWRVLTCNYVHVGLI 118
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLV 244
HL +N Y+L IG +E + G RR Y S + +S S A GASGAIFGL
Sbjct: 119 HLAMNMYALLFIGLFLEPLAGSRRMAMAYVLSGLYASLASLSVNAEWIAAGASGAIFGLY 178
Query: 245 GSFAVFIMRHRNILGGGKEE----LQHLAKVIIFNMV 277
G F +++ R GG+E L +A I++N++
Sbjct: 179 GLFFAYLLLRR----GGEERRKTLLISIAVFILYNLL 211
>gi|404260618|ref|ZP_10963899.1| hypothetical protein GONAM_52_00550 [Gordonia namibiensis NBRC
108229]
gi|403400926|dbj|GAC02309.1| hypothetical protein GONAM_52_00550 [Gordonia namibiensis NBRC
108229]
Length = 241
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 77/144 (53%), Gaps = 11/144 (7%)
Query: 123 ARTNLFIGRQW-TNILLAVNVLVYI------AQFATQDKLLLW--GAKINSLIDKGQFWR 173
A T L G+ + T L+ +N+L+++ F ++ G + S + G++WR
Sbjct: 5 ATTRLTAGKPYVTYTLIGINILIFLLCAVQAGSFGDPGAATIFSSGDLLKSDVAAGEYWR 64
Query: 174 LATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA 233
L TS FLH ++ H+ VN SL +G +E G RYL VY + + SA F N A
Sbjct: 65 LLTSGFLHFSVMHVAVNMLSLYILGRDLELALGMSRYLAVYLIALLGGSAAVMLFENDRA 124
Query: 234 V--GASGAIFGLVGSFAVFIMRHR 255
+ GASGAI+GL+G+ V I++ R
Sbjct: 125 LTAGASGAIYGLMGAMLVIILKAR 148
>gi|422727749|ref|ZP_16784179.1| peptidase, S54 family protein [Enterococcus faecalis TX0012]
gi|315151706|gb|EFT95722.1| peptidase, S54 family protein [Enterococcus faecalis TX0012]
Length = 236
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 69/124 (55%), Gaps = 8/124 (6%)
Query: 134 TNILLAVNVLVYIAQFATQD-----KLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T LL ++++V++ T L+ WGA + L+ + ++WR T FLH H+
Sbjct: 19 TYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNHEYWRFITPMFLHIGFMHI 78
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVG 245
++N +L IG +E I G RYLG+Y S IA + S+ F NS + GAS A+FGL G
Sbjct: 79 ILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFGTPNSVSAGASTALFGLFG 138
Query: 246 SFAV 249
+F +
Sbjct: 139 AFVI 142
>gi|149199790|ref|ZP_01876820.1| Rhomboid-like protein [Lentisphaera araneosa HTCC2155]
gi|149137078|gb|EDM25501.1| Rhomboid-like protein [Lentisphaera araneosa HTCC2155]
Length = 454
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 73/137 (53%), Gaps = 17/137 (12%)
Query: 134 TNILLAVNVLVYIAQFATQ----------DKLLLWGA-KINSLIDKGQFWRLATSAFLHA 182
T +++A+N++V+ + + D + WG+ +I ID+ WRL T AF+H
Sbjct: 115 TTVIIALNIIVFFLMYGIEKLNIIQPKNLDVFIQWGSNRIFETIDEP--WRLFTCAFIHF 172
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV---GASGA 239
+ H+ N Y L++IG EK+ GPR Y +Y SA S S NS V GASGA
Sbjct: 173 GLLHIACNMYFLHAIGRLSEKLLGPRFYFIIYIFSAFTGSLASL-LWNSDGVISAGASGA 231
Query: 240 IFGLVGSFAVFIMRHRN 256
+FG+VG F++ R+
Sbjct: 232 VFGVVGMVGAFLVMRRD 248
>gi|227524649|ref|ZP_03954698.1| S54 family peptidase [Lactobacillus hilgardii ATCC 8290]
gi|227088133|gb|EEI23445.1| S54 family peptidase [Lactobacillus hilgardii ATCC 8290]
Length = 234
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 71/130 (54%), Gaps = 10/130 (7%)
Query: 128 FIGR-----QWTNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKGQFWRLATS 177
F+GR T LL + VLVY+ + L+ +GAK N LI G++WRL T
Sbjct: 14 FMGRLRDKPYMTYALLGIMVLVYLLMTISGGTENVANLVRFGAKYNPLIRAGEYWRLLTP 73
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGAS 237
F+H H+++N +L IG +E + G R+L ++ S IA + S+ F S + GAS
Sbjct: 74 IFIHIGFTHILMNGITLYFIGQYVETLFGHWRFLLIFLVSGIAGNLASFAFSPSLSAGAS 133
Query: 238 GAIFGLVGSF 247
+IFGL G+F
Sbjct: 134 TSIFGLFGAF 143
>gi|29377262|ref|NP_816416.1| small hydrophobic molecule transporter protein [Enterococcus
faecalis V583]
gi|227554271|ref|ZP_03984318.1| S54 family peptidase [Enterococcus faecalis HH22]
gi|229544828|ref|ZP_04433553.1| S54 family peptidase [Enterococcus faecalis TX1322]
gi|229549095|ref|ZP_04437820.1| S54 family peptidase [Enterococcus faecalis ATCC 29200]
gi|256616711|ref|ZP_05473557.1| membrane-associated serine protease [Enterococcus faecalis ATCC
4200]
gi|256854083|ref|ZP_05559448.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256960966|ref|ZP_05565137.1| membrane-associated serine protease [Enterococcus faecalis Merz96]
gi|257081651|ref|ZP_05576012.1| membrane-associated serine protease [Enterococcus faecalis E1Sol]
gi|257084247|ref|ZP_05578608.1| membrane-associated serine protease [Enterococcus faecalis Fly1]
gi|257087753|ref|ZP_05582114.1| membrane-associated serine protease [Enterococcus faecalis D6]
gi|257091025|ref|ZP_05585386.1| membrane-associated serine protease [Enterococcus faecalis CH188]
gi|257420174|ref|ZP_05597168.1| membrane-associated serine protease [Enterococcus faecalis T11]
gi|257421601|ref|ZP_05598591.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|293382447|ref|ZP_06628382.1| rhomboid family protein [Enterococcus faecalis R712]
gi|293387169|ref|ZP_06631730.1| rhomboid family protein [Enterococcus faecalis S613]
gi|300860492|ref|ZP_07106579.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecalis
TUSoD Ef11]
gi|307276144|ref|ZP_07557275.1| peptidase, S54 family protein [Enterococcus faecalis TX2134]
gi|307286868|ref|ZP_07566950.1| peptidase, S54 family protein [Enterococcus faecalis TX0109]
gi|312900482|ref|ZP_07759784.1| peptidase, S54 family protein [Enterococcus faecalis TX0470]
gi|312904732|ref|ZP_07763881.1| peptidase, S54 family protein [Enterococcus faecalis TX0635]
gi|312906502|ref|ZP_07765504.1| peptidase, S54 family protein [Enterococcus faecalis DAPTO 512]
gi|312910446|ref|ZP_07769292.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecalis
DAPTO 516]
gi|312951098|ref|ZP_07770003.1| peptidase, S54 family protein [Enterococcus faecalis TX0102]
gi|384514113|ref|YP_005709206.1| rhomboid family protein [Enterococcus faecalis OG1RF]
gi|384519578|ref|YP_005706883.1| rhomboid family protein [Enterococcus faecalis 62]
gi|421512726|ref|ZP_15959525.1| GlpG protein (membrane protein of glp regulon) [Enterococcus
faecalis ATCC 29212]
gi|422684496|ref|ZP_16742732.1| peptidase, S54 family protein [Enterococcus faecalis TX4000]
gi|422690193|ref|ZP_16748251.1| peptidase, S54 family protein [Enterococcus faecalis TX0630]
gi|422691144|ref|ZP_16749183.1| peptidase, S54 family protein [Enterococcus faecalis TX0031]
gi|422693799|ref|ZP_16751805.1| peptidase, S54 family protein [Enterococcus faecalis TX4244]
gi|422697513|ref|ZP_16755449.1| peptidase, S54 family protein [Enterococcus faecalis TX1346]
gi|422699619|ref|ZP_16757482.1| peptidase, S54 family protein [Enterococcus faecalis TX1342]
gi|422702192|ref|ZP_16760030.1| peptidase, S54 family protein [Enterococcus faecalis TX1302]
gi|422706114|ref|ZP_16763819.1| peptidase, S54 family protein [Enterococcus faecalis TX0043]
gi|422709156|ref|ZP_16766669.1| peptidase, S54 family protein [Enterococcus faecalis TX0027]
gi|422712654|ref|ZP_16769417.1| peptidase, S54 family protein [Enterococcus faecalis TX0309A]
gi|422716503|ref|ZP_16773207.1| peptidase, S54 family protein [Enterococcus faecalis TX0309B]
gi|422719592|ref|ZP_16776223.1| peptidase, S54 family protein [Enterococcus faecalis TX0017]
gi|422723419|ref|ZP_16779955.1| peptidase, S54 family protein [Enterococcus faecalis TX2137]
gi|422726049|ref|ZP_16782504.1| peptidase, S54 family protein [Enterococcus faecalis TX0312]
gi|422731124|ref|ZP_16787499.1| peptidase, S54 family protein [Enterococcus faecalis TX0645]
gi|422734025|ref|ZP_16790322.1| peptidase, S54 family protein [Enterococcus faecalis TX1341]
gi|422738373|ref|ZP_16793570.1| peptidase, S54 family protein [Enterococcus faecalis TX2141]
gi|424672612|ref|ZP_18109567.1| peptidase, S54 family [Enterococcus faecalis 599]
gi|424755744|ref|ZP_18183600.1| peptidase, S54 family [Enterococcus faecalis R508]
gi|428767934|ref|YP_007154045.1| small hydrophobic molecule transporter protein, putative
[Enterococcus faecalis str. Symbioflor 1]
gi|430359105|ref|ZP_19425721.1| membrane-associated serine protease [Enterococcus faecalis OG1X]
gi|430370856|ref|ZP_19429263.1| membrane-associated serine protease [Enterococcus faecalis M7]
gi|29344728|gb|AAO82486.1| small hydrophobic molecule transporter protein, putative
[Enterococcus faecalis V583]
gi|227176561|gb|EEI57533.1| S54 family peptidase [Enterococcus faecalis HH22]
gi|229305783|gb|EEN71779.1| S54 family peptidase [Enterococcus faecalis ATCC 29200]
gi|229310050|gb|EEN76037.1| S54 family peptidase [Enterococcus faecalis TX1322]
gi|256596238|gb|EEU15414.1| membrane-associated serine protease [Enterococcus faecalis ATCC
4200]
gi|256711026|gb|EEU26069.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256951462|gb|EEU68094.1| membrane-associated serine protease [Enterococcus faecalis Merz96]
gi|256989681|gb|EEU76983.1| membrane-associated serine protease [Enterococcus faecalis E1Sol]
gi|256992277|gb|EEU79579.1| membrane-associated serine protease [Enterococcus faecalis Fly1]
gi|256995783|gb|EEU83085.1| membrane-associated serine protease [Enterococcus faecalis D6]
gi|256999837|gb|EEU86357.1| membrane-associated serine protease [Enterococcus faecalis CH188]
gi|257162002|gb|EEU91962.1| membrane-associated serine protease [Enterococcus faecalis T11]
gi|257163425|gb|EEU93385.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|291080131|gb|EFE17495.1| rhomboid family protein [Enterococcus faecalis R712]
gi|291083440|gb|EFE20403.1| rhomboid family protein [Enterococcus faecalis S613]
gi|295113720|emb|CBL32357.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Enterococcus sp. 7L76]
gi|300849531|gb|EFK77281.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecalis
TUSoD Ef11]
gi|306502083|gb|EFM71369.1| peptidase, S54 family protein [Enterococcus faecalis TX0109]
gi|306507138|gb|EFM76277.1| peptidase, S54 family protein [Enterococcus faecalis TX2134]
gi|310627445|gb|EFQ10728.1| peptidase, S54 family protein [Enterococcus faecalis DAPTO 512]
gi|310630874|gb|EFQ14157.1| peptidase, S54 family protein [Enterococcus faecalis TX0102]
gi|310631933|gb|EFQ15216.1| peptidase, S54 family protein [Enterococcus faecalis TX0635]
gi|311289218|gb|EFQ67774.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecalis
DAPTO 516]
gi|311292401|gb|EFQ70957.1| peptidase, S54 family protein [Enterococcus faecalis TX0470]
gi|315026583|gb|EFT38515.1| peptidase, S54 family protein [Enterococcus faecalis TX2137]
gi|315030810|gb|EFT42742.1| peptidase, S54 family protein [Enterococcus faecalis TX4000]
gi|315033041|gb|EFT44973.1| peptidase, S54 family protein [Enterococcus faecalis TX0017]
gi|315036315|gb|EFT48247.1| peptidase, S54 family protein [Enterococcus faecalis TX0027]
gi|315145726|gb|EFT89742.1| peptidase, S54 family protein [Enterococcus faecalis TX2141]
gi|315148748|gb|EFT92764.1| peptidase, S54 family protein [Enterococcus faecalis TX4244]
gi|315154212|gb|EFT98228.1| peptidase, S54 family protein [Enterococcus faecalis TX0031]
gi|315156498|gb|EFU00515.1| peptidase, S54 family protein [Enterococcus faecalis TX0043]
gi|315158975|gb|EFU02992.1| peptidase, S54 family protein [Enterococcus faecalis TX0312]
gi|315162792|gb|EFU06809.1| peptidase, S54 family protein [Enterococcus faecalis TX0645]
gi|315166274|gb|EFU10291.1| peptidase, S54 family protein [Enterococcus faecalis TX1302]
gi|315169133|gb|EFU13150.1| peptidase, S54 family protein [Enterococcus faecalis TX1341]
gi|315171857|gb|EFU15874.1| peptidase, S54 family protein [Enterococcus faecalis TX1342]
gi|315173893|gb|EFU17910.1| peptidase, S54 family protein [Enterococcus faecalis TX1346]
gi|315575258|gb|EFU87449.1| peptidase, S54 family protein [Enterococcus faecalis TX0309B]
gi|315576837|gb|EFU89028.1| peptidase, S54 family protein [Enterococcus faecalis TX0630]
gi|315582383|gb|EFU94574.1| peptidase, S54 family protein [Enterococcus faecalis TX0309A]
gi|323481711|gb|ADX81150.1| rhomboid family protein [Enterococcus faecalis 62]
gi|327536002|gb|AEA94836.1| rhomboid family protein [Enterococcus faecalis OG1RF]
gi|401674182|gb|EJS80541.1| GlpG protein (membrane protein of glp regulon) [Enterococcus
faecalis ATCC 29212]
gi|402354963|gb|EJU89751.1| peptidase, S54 family [Enterococcus faecalis 599]
gi|402408930|gb|EJV41379.1| peptidase, S54 family [Enterococcus faecalis R508]
gi|427186107|emb|CCO73331.1| small hydrophobic molecule transporter protein, putative
[Enterococcus faecalis str. Symbioflor 1]
gi|429513460|gb|ELA03041.1| membrane-associated serine protease [Enterococcus faecalis OG1X]
gi|429515221|gb|ELA04739.1| membrane-associated serine protease [Enterococcus faecalis M7]
Length = 236
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 69/124 (55%), Gaps = 8/124 (6%)
Query: 134 TNILLAVNVLVYIAQFATQD-----KLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T LL ++++V++ T L+ WGA + L+ + ++WR T FLH H+
Sbjct: 19 TYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNHEYWRFITPMFLHIGFMHI 78
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVG 245
++N +L IG +E I G RYLG+Y S IA + S+ F NS + GAS A+FGL G
Sbjct: 79 ILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFGTPNSVSAGASTALFGLFG 138
Query: 246 SFAV 249
+F +
Sbjct: 139 AFVI 142
>gi|300173053|ref|YP_003772219.1| membrane-associated serine protease [Leuconostoc gasicomitatum LMG
18811]
gi|299887432|emb|CBL91400.1| Membrane-associated serine protease [Leuconostoc gasicomitatum LMG
18811]
Length = 229
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 137 LLAVNVLVYIAQFATQ-------DKLLLWGAKINSLID-KGQFWRLATSAFLHANIAHLM 188
+ + VLV+ A+F L+ +GAK I Q+WRL T FLHA + H++
Sbjct: 18 IFVLTVLVFFAEFLIGRGQTDNGSILVAFGAKWGPYIKVYDQYWRLVTPLFLHAGVMHIL 77
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLVGSF 247
N +L IGP E+ G R++LG+Y I + MSY F + +VGAS A+FG+ G
Sbjct: 78 TNMLTLWFIGPIAEETFGSRKFLGLYLFGGIVGNIMSYLFAPLTVSVGASSALFGMFGGL 137
Query: 248 AVFIMRHRN 256
++ ++ ++
Sbjct: 138 ILYAVQFKH 146
>gi|257079952|ref|ZP_05574313.1| membrane-associated serine protease [Enterococcus faecalis JH1]
gi|294779541|ref|ZP_06744936.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecalis
PC1.1]
gi|307269340|ref|ZP_07550690.1| peptidase, S54 family protein [Enterococcus faecalis TX4248]
gi|307289776|ref|ZP_07569713.1| peptidase, S54 family protein [Enterococcus faecalis TX0411]
gi|397700974|ref|YP_006538762.1| rhomboid family protein [Enterococcus faecalis D32]
gi|256987982|gb|EEU75284.1| membrane-associated serine protease [Enterococcus faecalis JH1]
gi|294453420|gb|EFG21827.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecalis
PC1.1]
gi|306499161|gb|EFM68639.1| peptidase, S54 family protein [Enterococcus faecalis TX0411]
gi|306514339|gb|EFM82904.1| peptidase, S54 family protein [Enterococcus faecalis TX4248]
gi|397337613|gb|AFO45285.1| rhomboid family protein [Enterococcus faecalis D32]
Length = 236
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 69/124 (55%), Gaps = 8/124 (6%)
Query: 134 TNILLAVNVLVYIAQFATQD-----KLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T LL ++++V++ T L+ WGA + L+ + ++WR T FLH H+
Sbjct: 19 TYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNHEYWRFITPMFLHIGFMHI 78
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVG 245
++N +L IG +E I G RYLG+Y S IA + S+ F NS + GAS A+FGL G
Sbjct: 79 ILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFGTPNSVSAGASTALFGLFG 138
Query: 246 SFAV 249
+F +
Sbjct: 139 AFVI 142
>gi|403509381|ref|YP_006641019.1| rhomboid family protein [Nocardiopsis alba ATCC BAA-2165]
gi|402803589|gb|AFR10999.1| rhomboid family protein [Nocardiopsis alba ATCC BAA-2165]
Length = 256
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 86/161 (53%), Gaps = 28/161 (17%)
Query: 115 EGTSHLDTARTNLFIGR-------QWTNILLAVNVLVYIAQFATQDKL------------ 155
EG + +ART F G+ W+ +L + V+ ++ Q T L
Sbjct: 16 EGNRRVRSARTT-FGGKVVDKPYVTWS--ILVMMVVGFVLQLGTSTPLGQALSTPLVQHF 72
Query: 156 LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
+WG ++ G+++RL T+AFLH + HL+ N Y++ ++GP +E+ G R+L ++F
Sbjct: 73 SMWG---QGVVWHGEWYRLITAAFLHGGVLHLLFNSYAMYALGPQLERWLGHGRFLALWF 129
Query: 216 SSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHR 255
A++ S +S N P+VGASGAIF L G AVF++ R
Sbjct: 130 LGALSGSVLSLIATPNQPSVGASGAIFALFG--AVFVIGRR 168
>gi|227513507|ref|ZP_03943556.1| S54 family peptidase [Lactobacillus buchneri ATCC 11577]
gi|227083380|gb|EEI18692.1| S54 family peptidase [Lactobacillus buchneri ATCC 11577]
Length = 234
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 71/130 (54%), Gaps = 10/130 (7%)
Query: 128 FIGR-----QWTNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKGQFWRLATS 177
F+GR T LL + VLVY+ + L+ +GAK N LI G++WRL T
Sbjct: 14 FMGRLRDKPYMTYALLGIMVLVYLLMTISGGTENVANLVRFGAKYNPLIRAGEYWRLLTP 73
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGAS 237
F+H H+++N +L IG +E + G R+L ++ S IA + S+ F S + GAS
Sbjct: 74 IFIHIGFTHILMNGITLYFIGQYVETLFGHWRFLLIFLVSGIAGNLASFAFSPSLSAGAS 133
Query: 238 GAIFGLVGSF 247
+IFGL G+F
Sbjct: 134 TSIFGLFGAF 143
>gi|227519427|ref|ZP_03949476.1| S54 family peptidase [Enterococcus faecalis TX0104]
gi|424678054|ref|ZP_18114899.1| peptidase, S54 family [Enterococcus faecalis ERV103]
gi|424679974|ref|ZP_18116787.1| peptidase, S54 family [Enterococcus faecalis ERV116]
gi|424684441|ref|ZP_18121157.1| peptidase, S54 family [Enterococcus faecalis ERV129]
gi|424687903|ref|ZP_18124525.1| peptidase, S54 family [Enterococcus faecalis ERV25]
gi|424689750|ref|ZP_18126306.1| peptidase, S54 family [Enterococcus faecalis ERV31]
gi|424694204|ref|ZP_18130609.1| peptidase, S54 family [Enterococcus faecalis ERV37]
gi|424696292|ref|ZP_18132647.1| peptidase, S54 family [Enterococcus faecalis ERV41]
gi|424700479|ref|ZP_18136665.1| peptidase, S54 family [Enterococcus faecalis ERV62]
gi|424704746|ref|ZP_18140840.1| peptidase, S54 family [Enterococcus faecalis ERV63]
gi|424706937|ref|ZP_18142930.1| peptidase, S54 family [Enterococcus faecalis ERV65]
gi|424718163|ref|ZP_18147420.1| peptidase, S54 family [Enterococcus faecalis ERV68]
gi|424720446|ref|ZP_18149548.1| peptidase, S54 family [Enterococcus faecalis ERV72]
gi|424726078|ref|ZP_18154762.1| peptidase, S54 family [Enterococcus faecalis ERV73]
gi|424734075|ref|ZP_18162625.1| peptidase, S54 family [Enterococcus faecalis ERV81]
gi|424746066|ref|ZP_18174317.1| peptidase, S54 family [Enterococcus faecalis ERV85]
gi|424753580|ref|ZP_18181522.1| peptidase, S54 family [Enterococcus faecalis ERV93]
gi|227073134|gb|EEI11097.1| S54 family peptidase [Enterococcus faecalis TX0104]
gi|402352548|gb|EJU87394.1| peptidase, S54 family [Enterococcus faecalis ERV103]
gi|402355193|gb|EJU89971.1| peptidase, S54 family [Enterococcus faecalis ERV116]
gi|402361515|gb|EJU96072.1| peptidase, S54 family [Enterococcus faecalis ERV129]
gi|402362568|gb|EJU97093.1| peptidase, S54 family [Enterococcus faecalis ERV25]
gi|402366516|gb|EJV00887.1| peptidase, S54 family [Enterococcus faecalis ERV31]
gi|402371419|gb|EJV05578.1| peptidase, S54 family [Enterococcus faecalis ERV37]
gi|402373701|gb|EJV07766.1| peptidase, S54 family [Enterococcus faecalis ERV62]
gi|402378181|gb|EJV12058.1| peptidase, S54 family [Enterococcus faecalis ERV41]
gi|402381183|gb|EJV14896.1| peptidase, S54 family [Enterococcus faecalis ERV63]
gi|402382489|gb|EJV16152.1| peptidase, S54 family [Enterococcus faecalis ERV68]
gi|402386145|gb|EJV19654.1| peptidase, S54 family [Enterococcus faecalis ERV65]
gi|402389794|gb|EJV23175.1| peptidase, S54 family [Enterococcus faecalis ERV73]
gi|402390594|gb|EJV23928.1| peptidase, S54 family [Enterococcus faecalis ERV81]
gi|402393308|gb|EJV26536.1| peptidase, S54 family [Enterococcus faecalis ERV72]
gi|402397911|gb|EJV30902.1| peptidase, S54 family [Enterococcus faecalis ERV85]
gi|402403870|gb|EJV36518.1| peptidase, S54 family [Enterococcus faecalis ERV93]
Length = 236
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 69/124 (55%), Gaps = 8/124 (6%)
Query: 134 TNILLAVNVLVYIAQFATQD-----KLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T LL ++++V++ T L+ WGA + L+ + ++WR T FLH H+
Sbjct: 19 TYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNHEYWRFITPMFLHIGFMHI 78
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVG 245
++N +L IG +E I G RYLG+Y S IA + S+ F NS + GAS A+FGL G
Sbjct: 79 ILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFGTPNSVSAGASTALFGLFG 138
Query: 246 SFAV 249
+F +
Sbjct: 139 AFVI 142
>gi|256963891|ref|ZP_05568062.1| membrane-associated serine protease [Enterococcus faecalis
HIP11704]
gi|257416957|ref|ZP_05593951.1| membrane-associated serine protease [Enterococcus faecalis ARO1/DG]
gi|307272082|ref|ZP_07553345.1| peptidase, S54 family protein [Enterococcus faecalis TX0855]
gi|307280665|ref|ZP_07561713.1| peptidase, S54 family protein [Enterococcus faecalis TX0860]
gi|256954387|gb|EEU71019.1| membrane-associated serine protease [Enterococcus faecalis
HIP11704]
gi|257158785|gb|EEU88745.1| membrane-associated serine protease [Enterococcus faecalis ARO1/DG]
gi|306504031|gb|EFM73248.1| peptidase, S54 family protein [Enterococcus faecalis TX0860]
gi|306511198|gb|EFM80205.1| peptidase, S54 family protein [Enterococcus faecalis TX0855]
Length = 236
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 69/124 (55%), Gaps = 8/124 (6%)
Query: 134 TNILLAVNVLVYIAQFATQD-----KLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T LL ++++V++ T L+ WGA + L+ + ++WR T FLH H+
Sbjct: 19 TYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNHEYWRFITPMFLHIGFMHI 78
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVG 245
++N +L IG +E I G RYLG+Y S IA + S+ F NS + GAS A+FGL G
Sbjct: 79 ILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFGTPNSVSAGASTALFGLFG 138
Query: 246 SFAV 249
+F +
Sbjct: 139 AFVI 142
>gi|319937466|ref|ZP_08011871.1| hypothetical protein HMPREF9488_02707 [Coprobacillus sp. 29_1]
gi|319807306|gb|EFW03915.1| hypothetical protein HMPREF9488_02707 [Coprobacillus sp. 29_1]
Length = 213
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 79/146 (54%), Gaps = 30/146 (20%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKG---------------QFWRLATSA 178
T++L+A+ V++Y+ F LL+G ++N + +G +++RL T+
Sbjct: 15 TSVLIALCVVIYVISF------LLYGEEMN--VYEGMAFGGYNPVFVQLNHEYYRLITAN 66
Query: 179 FLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-------CNS 231
F+H I H+ VNCYSL IG +E P++Y V F SA+A++ + Y N+
Sbjct: 67 FIHFGIIHIAVNCYSLYGIGMFIESSLKPKKYCIVLFISALATTGLPYLLYLINGFEANT 126
Query: 232 PAVGASGAIFGLVGSFAVFIMRHRNI 257
+ G SG IFGL+G+ +++R+I
Sbjct: 127 VSGGISGVIFGLIGALGALALKYRDI 152
>gi|384049179|ref|YP_005497196.1| hypothetical protein BMWSH_5009 [Bacillus megaterium WSH-002]
gi|345446870|gb|AEN91887.1| Conserved membrane protein YdcA [Bacillus megaterium WSH-002]
Length = 200
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 65/106 (61%), Gaps = 2/106 (1%)
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+NSLI +G +WRL T FLH + +HL+ N +SL +GP E+I ++L Y + +
Sbjct: 49 VNSLISQGDYWRLFTPIFLHLSFSHLLFNSFSLFLLGPGAERILSSYKFLLFYLTCGLLG 108
Query: 222 SAMSYRFCNS--PAVGASGAIFGLVGSFAVFIMRHRNILGGGKEEL 265
+ +++ +S VGASGAIFGL+G + +++ +++L +++
Sbjct: 109 NIVTFLIQSSFYSHVGASGAIFGLLGFYLYLVIKQKHMLSKSNQQI 154
>gi|294497058|ref|YP_003560758.1| peptidase, S54 (rhomboid) family protein [Bacillus megaterium QM
B1551]
gi|294346995|gb|ADE67324.1| peptidase, S54 (rhomboid) family protein [Bacillus megaterium QM
B1551]
Length = 200
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 65/106 (61%), Gaps = 2/106 (1%)
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+NSLI +G +WRL T FLH + +HL+ N +SL +GP E+I ++L Y + +
Sbjct: 49 VNSLISQGDYWRLFTPIFLHLSFSHLLFNSFSLFLLGPGAERILSSYKFLLFYLTCGLLG 108
Query: 222 SAMSYRFCNS--PAVGASGAIFGLVGSFAVFIMRHRNILGGGKEEL 265
+ +++ +S VGASGAIFGL+G + +++ +++L +++
Sbjct: 109 NIVTFLIQSSFYSHVGASGAIFGLLGFYLYLVIKQKHMLSQSNQQI 154
>gi|357390844|ref|YP_004905685.1| putative peptidase S54 family protein [Kitasatospora setae KM-6054]
gi|311897321|dbj|BAJ29729.1| putative peptidase S54 family protein [Kitasatospora setae KM-6054]
Length = 307
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 87/167 (52%), Gaps = 20/167 (11%)
Query: 134 TNILLAVNVLV-----YIAQFATQDKLLLWGAKINSLIDKG------QFWRLATSAFLHA 182
T +L+ +N+LV Y+ Q ++ L ++ G +++RL ++ F+H
Sbjct: 94 TKVLIGINLLVFLFTQYVDQSWQKNPLGMYSWAPAPWERHGVAEGPLEWYRLVSAQFVHG 153
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP--AVGASGAI 240
+ H+ N +SL +GP +E++ G RYL +Y S IA +A+ Y + AVGASGAI
Sbjct: 154 GLMHIAANVFSLWVLGPQLERVLGRARYLTLYLVSGIAGNALGYLLTGADMWAVGASGAI 213
Query: 241 FGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANIVK 287
FGL+G+ AV R +Q + +++ N+V + + +++
Sbjct: 214 FGLLGATAVLFRVTRT-------PMQPVIALLVVNLVMTFSLHSVID 253
>gi|386384848|ref|ZP_10070191.1| hypothetical protein STSU_17454 [Streptomyces tsukubaensis
NRRL18488]
gi|385667692|gb|EIF91092.1| hypothetical protein STSU_17454 [Streptomyces tsukubaensis
NRRL18488]
Length = 299
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 72/132 (54%), Gaps = 12/132 (9%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL----LWGAKINSLIDK------GQFWRLATSAFLHAN 183
T IL+ +N+ V++A A D+ + L G + L+ + GQ++RL TS FLH +
Sbjct: 88 TKILIGINLAVFVAVLALGDRFVDEMSLIGLAYSPLLGEVVGLADGQWYRLLTSVFLHQD 147
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIF 241
++H+ N +L +G +E G R+L +Y S + Y N +GASGAIF
Sbjct: 148 LSHIAFNMLALWFLGRMVEPALGRSRFLVLYLLSGLGGDVFVYLLSEPNQATIGASGAIF 207
Query: 242 GLVGSFAVFIMR 253
GLVG+FAV + R
Sbjct: 208 GLVGAFAVLLRR 219
>gi|374313630|ref|YP_005060060.1| Peptidase S54, rhomboid domain protein [Granulicella mallensis
MP5ACTX8]
gi|358755640|gb|AEU39030.1| Peptidase S54, rhomboid domain protein [Granulicella mallensis
MP5ACTX8]
Length = 225
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 70/135 (51%), Gaps = 10/135 (7%)
Query: 134 TNILLAVNVLVYIAQFA--------TQDKLLLWGAKINSL-IDKGQFWRLATSAFLHANI 184
T L+A+NVLV+ A A T + WG L + Q+WRL TS FLH I
Sbjct: 24 TYALIAINVLVFAAMVASGVSFTEPTALDVANWGGDFGPLTVGAHQWWRLLTSCFLHFGI 83
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGL 243
H+ N Y L IGP +E G RYL +YF + + S +S + GASGAIFGL
Sbjct: 84 IHIGFNMYVLFQIGPFIEMAFGRIRYLLIYFFAGLGGSLVSVWVHPMVVGAGASGAIFGL 143
Query: 244 VGSFAVFIMRHRNIL 258
G+ F++R+R L
Sbjct: 144 YGAVFGFLLRNRRSL 158
>gi|168053660|ref|XP_001779253.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669352|gb|EDQ55941.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 184
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 82/153 (53%), Gaps = 10/153 (6%)
Query: 137 LLAVNVLVYIAQFATQDKL---------LLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
L+A+NV VY+ A+ ++ L+GAK+N LI G++WRL T FLH+ HL
Sbjct: 1 LVALNVAVYLFGLASPQEVPGMVDASLPYLYGAKVNELIVNGEWWRLITPTFLHSGFLHL 60
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
++ ++L GP + G + +Y + + +S+ VG SG IF L+ ++
Sbjct: 61 GLSTWALLEFGPAVGSAFGTLGFSAIYLLGGLYGNLLSFFHTPQGTVGGSGPIFALMAAW 120
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMVCSA 280
V+I+R+R+I+G + + KV+IF + A
Sbjct: 121 VVYILRNRDIIGLDVAG-EIIRKVVIFTAITYA 152
>gi|255971815|ref|ZP_05422401.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|255962833|gb|EET95309.1| conserved hypothetical protein [Enterococcus faecalis T1]
Length = 230
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 69/124 (55%), Gaps = 8/124 (6%)
Query: 134 TNILLAVNVLVYIAQFATQD-----KLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T LL ++++V++ T L+ WGA + L+ + ++WR T FLH H+
Sbjct: 13 TYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNHEYWRFITPMFLHIGFMHI 72
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVG 245
++N +L IG +E I G RYLG+Y S IA + S+ F NS + GAS A+FGL G
Sbjct: 73 ILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFGTPNSVSAGASTALFGLFG 132
Query: 246 SFAV 249
+F +
Sbjct: 133 AFVI 136
>gi|255974810|ref|ZP_05425396.1| membrane-associated serine protease [Enterococcus faecalis T2]
gi|255967682|gb|EET98304.1| membrane-associated serine protease [Enterococcus faecalis T2]
Length = 230
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 69/124 (55%), Gaps = 8/124 (6%)
Query: 134 TNILLAVNVLVYIAQFATQD-----KLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T LL ++++V++ T L+ WGA + L+ + ++WR T FLH H+
Sbjct: 13 TYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNHEYWRFITPMFLHIGFMHI 72
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVG 245
++N +L IG +E I G RYLG+Y S IA + S+ F NS + GAS A+FGL G
Sbjct: 73 ILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFGTPNSVSAGASTALFGLFG 132
Query: 246 SFAV 249
+F +
Sbjct: 133 AFVI 136
>gi|343928757|ref|ZP_08768202.1| hypothetical protein GOALK_120_01840 [Gordonia alkanivorans NBRC
16433]
gi|343761506|dbj|GAA15128.1| hypothetical protein GOALK_120_01840 [Gordonia alkanivorans NBRC
16433]
Length = 238
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 77/144 (53%), Gaps = 11/144 (7%)
Query: 123 ARTNLFIGRQW-TNILLAVNVLVYI------AQFATQDKLLLW--GAKINSLIDKGQFWR 173
A T L G+ + T L+ +N+L+++ F ++ G + S + G++WR
Sbjct: 2 ATTRLSAGKPYVTYTLIGINILIFLLCAVQAGSFGDPGAATIFSSGDLLKSDVAAGEYWR 61
Query: 174 LATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA 233
L TS FLH ++ H+ VN SL +G +E G RYL VY + + SA F N A
Sbjct: 62 LLTSGFLHFSVMHVAVNMLSLYILGRDLELALGMSRYLAVYLIALLGGSAAVMLFENDRA 121
Query: 234 V--GASGAIFGLVGSFAVFIMRHR 255
+ GASGAI+GL+G+ V I++ R
Sbjct: 122 LTAGASGAIYGLMGAMLVVILKAR 145
>gi|317127070|ref|YP_004093352.1| rhomboid family protein [Bacillus cellulosilyticus DSM 2522]
gi|315472018|gb|ADU28621.1| Rhomboid family protein [Bacillus cellulosilyticus DSM 2522]
Length = 249
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 77/135 (57%), Gaps = 10/135 (7%)
Query: 132 QWTNILLAVNVLVY--IAQFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+ +L+A+N+++Y ++ + L+ +G N I G+ WR+ T FLH +I HL
Sbjct: 16 KLVTVLIAINLVIYFWMSMYPKLGGQLIEAYGVGSNYHIAMGELWRIVTPIFLHGSIMHL 75
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA----VGASGAIFGL 243
+ NC+SL GP +EK+ G + L YF++ I ++ + F +P +GASGAI+GL
Sbjct: 76 LFNCFSLFLFGPALEKMLGKGKLLIAYFATGILANIAT--FILAPLFYFHLGASGAIYGL 133
Query: 244 VGSFAVFIMRHRNIL 258
G + ++ ++++
Sbjct: 134 FGIYLYMVLVRKDLI 148
>gi|256763410|ref|ZP_05503990.1| membrane-associated serine protease [Enterococcus faecalis T3]
gi|256684661|gb|EEU24356.1| membrane-associated serine protease [Enterococcus faecalis T3]
Length = 230
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 69/124 (55%), Gaps = 8/124 (6%)
Query: 134 TNILLAVNVLVYIAQFATQD-----KLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T LL ++++V++ T L+ WGA + L+ + ++WR T FLH H+
Sbjct: 13 TYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNHEYWRFITPIFLHIGFMHI 72
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVG 245
++N +L IG +E I G RYLG+Y S IA + S+ F NS + GAS A+FGL G
Sbjct: 73 ILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFGTPNSVSAGASTALFGLFG 132
Query: 246 SFAV 249
+F +
Sbjct: 133 AFVI 136
>gi|359771058|ref|ZP_09274523.1| rhomboid family protein [Gordonia effusa NBRC 100432]
gi|359311809|dbj|GAB17301.1| rhomboid family protein [Gordonia effusa NBRC 100432]
Length = 221
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 65/123 (52%), Gaps = 11/123 (8%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ G++WRL T+ FLH ++ HL VN SL +G ++E GPR+Y VY ++ SA +
Sbjct: 50 LAGGEYWRLLTAGFLHLSLIHLGVNMLSLYVLGVSLEPALGPRQYTAVYLTALFGGSA-A 108
Query: 226 YRFCNSPAV---GASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAF 282
P GASGAI+GL+G+ + ++R R + + +I N+V S
Sbjct: 109 VSMLGEPTTMTAGASGAIYGLMGALLILVLRAR-------MSVAPVVGIIAINVVLSLTL 161
Query: 283 ANI 285
NI
Sbjct: 162 PNI 164
>gi|314933721|ref|ZP_07841086.1| rhomboid family protein [Staphylococcus caprae C87]
gi|313653871|gb|EFS17628.1| rhomboid family protein [Staphylococcus caprae C87]
Length = 487
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 79/131 (60%), Gaps = 6/131 (4%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
TN+++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N S
Sbjct: 166 TNVIIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLS 224
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGS-FAVFI 251
L G +E I G R L +YF S + + +S F S +VGASGAIFGL+GS FA+
Sbjct: 225 LFIFGKIVESIVGSWRMLVIYFVSGLFGNFVSLSFNTSTISVGASGAIFGLIGSIFAIMY 284
Query: 252 MR---HRNILG 259
+ R ++G
Sbjct: 285 LSKTFDRKVIG 295
>gi|227890613|ref|ZP_04008418.1| S54 family peptidase [Lactobacillus salivarius ATCC 11741]
gi|417788071|ref|ZP_12435754.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
salivarius NIAS840]
gi|417810486|ref|ZP_12457165.1| S54 family peptidase [Lactobacillus salivarius GJ-24]
gi|418961160|ref|ZP_13513047.1| rhomboid family integral membrane protein [Lactobacillus salivarius
SMXD51]
gi|227867551|gb|EEJ74972.1| S54 family peptidase [Lactobacillus salivarius ATCC 11741]
gi|334308248|gb|EGL99234.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
salivarius NIAS840]
gi|335349282|gb|EGM50782.1| S54 family peptidase [Lactobacillus salivarius GJ-24]
gi|380344827|gb|EIA33173.1| rhomboid family integral membrane protein [Lactobacillus salivarius
SMXD51]
Length = 220
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 69/120 (57%), Gaps = 6/120 (5%)
Query: 134 TNILLAVNVLVYIAQ--FATQDK---LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+ +N+++YI F + L+ +GAK + I GQ+WRL T F+H + HL+
Sbjct: 12 TYTLIILNIVMYIVMTLFGGTENIANLVRFGAKYSPYIINGQYWRLITPMFIHIGLQHLL 71
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSF 247
+N +L +G +E I G R+L +Y S I + S+ F +S + GAS A+FG+ GSF
Sbjct: 72 INMITLYFLGTLLENIFGKTRFLIIYLVSGICGNIASFAFNFSSISAGASTALFGMFGSF 131
>gi|223043140|ref|ZP_03613187.1| rhomboid family protein [Staphylococcus capitis SK14]
gi|417907800|ref|ZP_12551567.1| peptidase, S54 family [Staphylococcus capitis VCU116]
gi|222443351|gb|EEE49449.1| rhomboid family protein [Staphylococcus capitis SK14]
gi|341594887|gb|EGS37565.1| peptidase, S54 family [Staphylococcus capitis VCU116]
Length = 487
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 79/131 (60%), Gaps = 6/131 (4%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
TN+++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N S
Sbjct: 166 TNVIIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLS 224
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGS-FAVFI 251
L G +E I G R L +YF S + + +S F S +VGASGAIFGL+GS FA+
Sbjct: 225 LFIFGKIVESIVGSWRMLVIYFVSGLFGNFVSLSFNTSTISVGASGAIFGLIGSIFAIMY 284
Query: 252 MR---HRNILG 259
+ R ++G
Sbjct: 285 LSKTFDRKVIG 295
>gi|23098073|ref|NP_691539.1| hypothetical protein OB0618 [Oceanobacillus iheyensis HTE831]
gi|22776298|dbj|BAC12574.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 258
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 87/159 (54%), Gaps = 12/159 (7%)
Query: 137 LLAVNVLVYIAQFATQDKLLL--------WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
+++V V++ I +A D L L +G N+ I+ GQ+WRL T FLH + H++
Sbjct: 18 VVSVLVIINITLWAINDLLQLQIGRFIEVYGIGFNAAIEAGQWWRLITPIFLHGGLMHML 77
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAI-ASSAMSYRFCNSPA-VGASGAIFGLVGS 246
N +SL GP +E++ G +++ Y +AI A+ A+ + S A +GASGAIFGL G
Sbjct: 78 FNSFSLVLFGPALEQMLGRFKFILAYLGTAITANIAIFFLQPMSYAHLGASGAIFGLFGI 137
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
+ +M ++++ + Q +A ++ +V + NI
Sbjct: 138 YVFMVMYRKDLI--DQSSSQMIAVIVGIGLVMTFIRPNI 174
>gi|90961526|ref|YP_535442.1| rhomboid family integral membrane protein [Lactobacillus salivarius
UCC118]
gi|385840241|ref|YP_005863565.1| Integral membrane protein, Rhomboid family [Lactobacillus
salivarius CECT 5713]
gi|90820720|gb|ABD99359.1| Integral membrane protein, Rhomboid family [Lactobacillus
salivarius UCC118]
gi|300214362|gb|ADJ78778.1| Integral membrane protein, Rhomboid family [Lactobacillus
salivarius CECT 5713]
Length = 220
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 69/120 (57%), Gaps = 6/120 (5%)
Query: 134 TNILLAVNVLVYIAQ--FATQDK---LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+ +N+++YI F + L+ +GAK + I GQ+WRL T F+H + HL+
Sbjct: 12 TYTLIILNIVMYIVMTLFGGTENIANLVRFGAKYSPYIINGQYWRLITPMFIHIGLQHLL 71
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSF 247
+N +L +G +E I G R+L +Y S I + S+ F +S + GAS A+FG+ GSF
Sbjct: 72 INMITLYFLGTLLENIFGKTRFLIIYLVSGICGNIASFAFNFSSISAGASTALFGMFGSF 131
>gi|24372586|ref|NP_716628.1| rhomboid protease [Shewanella oneidensis MR-1]
gi|24346607|gb|AAN54073.1| rhomboid protease [Shewanella oneidensis MR-1]
Length = 528
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 70/132 (53%), Gaps = 9/132 (6%)
Query: 129 IGRQWTNILLAVNVLVYIAQ-FATQ-------DKLLLWGAKINSLIDKGQFWRLATSAFL 180
+G T ILL VL+++ FA+ LL WGA + L+ Q WRL ++ FL
Sbjct: 332 VGFVITPILLLSKVLIFMLMVFASHHFITLPNSVLLDWGANLRQLVLDQQVWRLISNVFL 391
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGA 239
H + HL+ N Y L G +E + G R LGVY S +A+S S + + ++GASGA
Sbjct: 392 HGGLMHLIFNLYGLFFAGIFLEPLLGKWRLLGVYLMSGLAASIASISWYEATISIGASGA 451
Query: 240 IFGLVGSFAVFI 251
I GL G ++I
Sbjct: 452 IMGLFGVLIMWI 463
>gi|300767209|ref|ZP_07077121.1| S54 family peptidase [Lactobacillus plantarum subsp. plantarum ATCC
14917]
gi|380032412|ref|YP_004889403.1| membrane-bound protease, rhomboid family [Lactobacillus plantarum
WCFS1]
gi|418275176|ref|ZP_12890499.1| membrane-bound protease, rhomboid family [Lactobacillus plantarum
subsp. plantarum NC8]
gi|300495028|gb|EFK30184.1| S54 family peptidase [Lactobacillus plantarum subsp. plantarum ATCC
14917]
gi|342241655|emb|CCC78889.1| membrane-bound protease, rhomboid family [Lactobacillus plantarum
WCFS1]
gi|376008727|gb|EHS82056.1| membrane-bound protease, rhomboid family [Lactobacillus plantarum
subsp. plantarum NC8]
Length = 227
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 64/118 (54%), Gaps = 4/118 (3%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL----WGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
T +LL + V V++ ++ D +L GAK N I GQ+WRL T FLH + H+ +
Sbjct: 15 TQVLLGITVAVFLVEWLMGDGAMLVFNSLGAKNNQAIAAGQWWRLVTPMFLHMGLTHIAL 74
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
N + +G +E + G R L +Y I+ + MS+ N+ +VGAS A F L G+F
Sbjct: 75 NGVVIYFMGMQIEAMYGHWRMLAIYILGGISGNIMSFALSNNQSVGASTACFALFGAF 132
>gi|254556483|ref|YP_003062900.1| hypothetical protein JDM1_1316 [Lactobacillus plantarum JDM1]
gi|308180426|ref|YP_003924554.1| integral membrane protein [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|448821092|ref|YP_007414254.1| Membrane-bound protease, rhomboid family [Lactobacillus plantarum
ZJ316]
gi|254045410|gb|ACT62203.1| integral membrane protein [Lactobacillus plantarum JDM1]
gi|308045917|gb|ADN98460.1| integral membrane protein [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|448274589|gb|AGE39108.1| Membrane-bound protease, rhomboid family [Lactobacillus plantarum
ZJ316]
Length = 227
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 64/118 (54%), Gaps = 4/118 (3%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL----WGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
T +LL + V V++ ++ D +L GAK N I GQ+WRL T FLH + H+ +
Sbjct: 15 TQVLLGITVAVFLVEWLMGDGAMLIFNSLGAKNNQAIAAGQWWRLVTPMFLHMGLTHIAL 74
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
N + +G +E + G R L +Y I+ + MS+ N+ +VGAS A F L G+F
Sbjct: 75 NGVVIYFMGMQIEAMYGHWRMLAIYILGGISGNIMSFALSNNQSVGASTACFALFGAF 132
>gi|254549044|ref|ZP_05139491.1| putative integral membrane protein [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
Length = 247
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 79/153 (51%), Gaps = 18/153 (11%)
Query: 114 HEGTSHLDTARTNLFIGRQ------WTNILLAVNVLVYIAQFAT---QDKLLLWGAKINS 164
EG + RT F GRQ T L+++N LV++ Q + +L LW + S
Sbjct: 13 REGARAVRQPRTP-FGGRQRSATPVVTYTLISLNALVFVMQVTVMGLERQLALWPPAVAS 71
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
GQ +RL TSAFLH HL++N ++L +GP +E G R+ +Y SA+ S +
Sbjct: 72 ----GQTYRLVTSAFLHYGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSALGGSVL 127
Query: 225 SYRFC--NSPAVGASGAIFGLVGSFAVFIMRHR 255
Y N+ GASGA+FGL G A F++ R
Sbjct: 128 VYLIAPLNTATAGASGAVFGLFG--ATFMVARR 158
>gi|433629203|ref|YP_007262831.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070010]
gi|432160796|emb|CCK58126.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070010]
Length = 249
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 79/153 (51%), Gaps = 18/153 (11%)
Query: 114 HEGTSHLDTARTNLFIGRQ------WTNILLAVNVLVYIAQFAT---QDKLLLWGAKINS 164
EG + RT F GRQ T L+++N LV++ Q + +L LW + S
Sbjct: 15 REGARAVRQPRTP-FGGRQRSATPVVTYTLISLNALVFVMQVTVMGLERQLALWPPAVAS 73
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
GQ +RL TSAFLH HL++N ++L +GP +E G R+ +Y SA+ S +
Sbjct: 74 ----GQTYRLVTSAFLHYGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSALGGSVL 129
Query: 225 SYRFC--NSPAVGASGAIFGLVGSFAVFIMRHR 255
Y N+ GASGA+FGL G A F++ R
Sbjct: 130 VYLIAPLNTATAGASGAVFGLFG--ATFMVARR 160
>gi|15607252|ref|NP_214624.1| Probable conserved integral membrane protein [Mycobacterium
tuberculosis H37Rv]
gi|31791288|ref|NP_853781.1| hypothetical protein Mb0114 [Mycobacterium bovis AF2122/97]
gi|121636023|ref|YP_976246.1| integral membrane protein [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148659873|ref|YP_001281396.1| rhomboid family protein [Mycobacterium tuberculosis H37Ra]
gi|167967299|ref|ZP_02549576.1| conserved integral membrane protein [Mycobacterium tuberculosis
H37Ra]
gi|224988496|ref|YP_002643183.1| integral membrane protein [Mycobacterium bovis BCG str. Tokyo 172]
gi|254366565|ref|ZP_04982609.1| conserved integral membrane protein [Mycobacterium tuberculosis
str. Haarlem]
gi|289441479|ref|ZP_06431223.1| conserved membrane protein [Mycobacterium tuberculosis T46]
gi|289568003|ref|ZP_06448230.1| conserved membrane protein [Mycobacterium tuberculosis T17]
gi|289572690|ref|ZP_06452917.1| rhomboid family protein [Mycobacterium tuberculosis K85]
gi|289748582|ref|ZP_06507960.1| conserved membrane protein [Mycobacterium tuberculosis T92]
gi|289756172|ref|ZP_06515550.1| rhomboid family protein [Mycobacterium tuberculosis EAS054]
gi|289760210|ref|ZP_06519588.1| rhomboid family protein [Mycobacterium tuberculosis T85]
gi|289764227|ref|ZP_06523605.1| rhomboid family protein [Mycobacterium tuberculosis GM 1503]
gi|294992953|ref|ZP_06798644.1| putative integral membrane protein [Mycobacterium tuberculosis 210]
gi|297632583|ref|ZP_06950363.1| putative integral membrane protein [Mycobacterium tuberculosis KZN
4207]
gi|297729557|ref|ZP_06958675.1| putative integral membrane protein [Mycobacterium tuberculosis KZN
R506]
gi|298527502|ref|ZP_07014911.1| rhomboid family serine protease [Mycobacterium tuberculosis
94_M4241A]
gi|306774194|ref|ZP_07412531.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
gi|306778939|ref|ZP_07417276.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
gi|306782726|ref|ZP_07421048.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
gi|306787094|ref|ZP_07425416.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
gi|306791651|ref|ZP_07429953.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
gi|306798472|ref|ZP_07436774.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006]
gi|306801688|ref|ZP_07438356.1| conserved membrane protein [Mycobacterium tuberculosis SUMu008]
gi|306805900|ref|ZP_07442568.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
gi|306974529|ref|ZP_07487190.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
gi|307082237|ref|ZP_07491407.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011]
gi|313656884|ref|ZP_07813764.1| putative integral membrane protein [Mycobacterium tuberculosis KZN
V2475]
gi|339630194|ref|YP_004721836.1| hypothetical protein MAF_01110 [Mycobacterium africanum GM041182]
gi|340625145|ref|YP_004743597.1| putative integral membrane protein [Mycobacterium canettii CIPT
140010059]
gi|378769856|ref|YP_005169589.1| hypothetical protein BCGMEX_0114 [Mycobacterium bovis BCG str.
Mexico]
gi|385996882|ref|YP_005915180.1| integral membrane protein [Mycobacterium tuberculosis CTRI-2]
gi|386003192|ref|YP_005921471.1| hypothetical protein MRGA423_00715 [Mycobacterium tuberculosis
RGTB423]
gi|392384830|ref|YP_005306459.1| unnamed protein product [Mycobacterium tuberculosis UT205]
gi|397671894|ref|YP_006513428.1| hypothetical protein RVBD_0110 [Mycobacterium tuberculosis H37Rv]
gi|424806593|ref|ZP_18232024.1| conserved membrane protein [Mycobacterium tuberculosis W-148]
gi|433625211|ref|YP_007258840.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140060008]
gi|31616873|emb|CAD92975.1| PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN [Mycobacterium bovis
AF2122/97]
gi|121491670|emb|CAL70128.1| Probable conserved integral membrane protein [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|134152077|gb|EBA44122.1| conserved integral membrane protein [Mycobacterium tuberculosis
str. Haarlem]
gi|148504025|gb|ABQ71834.1| Rhomboid family protein [Mycobacterium tuberculosis H37Ra]
gi|224771609|dbj|BAH24415.1| putative integral membrane protein [Mycobacterium bovis BCG str.
Tokyo 172]
gi|289414398|gb|EFD11638.1| conserved membrane protein [Mycobacterium tuberculosis T46]
gi|289537121|gb|EFD41699.1| rhomboid family protein [Mycobacterium tuberculosis K85]
gi|289541756|gb|EFD45405.1| conserved membrane protein [Mycobacterium tuberculosis T17]
gi|289689169|gb|EFD56598.1| conserved membrane protein [Mycobacterium tuberculosis T92]
gi|289696759|gb|EFD64188.1| rhomboid family protein [Mycobacterium tuberculosis EAS054]
gi|289711733|gb|EFD75749.1| rhomboid family protein [Mycobacterium tuberculosis GM 1503]
gi|289715774|gb|EFD79786.1| rhomboid family protein [Mycobacterium tuberculosis T85]
gi|298497296|gb|EFI32590.1| rhomboid family serine protease [Mycobacterium tuberculosis
94_M4241A]
gi|308217202|gb|EFO76601.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
gi|308328061|gb|EFP16912.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
gi|308332433|gb|EFP21284.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
gi|308336197|gb|EFP25048.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
gi|308339800|gb|EFP28651.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
gi|308341295|gb|EFP30146.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006]
gi|308347577|gb|EFP36428.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
gi|308351519|gb|EFP40370.1| conserved membrane protein [Mycobacterium tuberculosis SUMu008]
gi|308356167|gb|EFP45018.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
gi|308360107|gb|EFP48958.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011]
gi|326905869|gb|EGE52802.1| conserved membrane protein [Mycobacterium tuberculosis W-148]
gi|339329550|emb|CCC25185.1| putative conserved integral membrane protein [Mycobacterium
africanum GM041182]
gi|340003335|emb|CCC42454.1| putative conserved integral membrane protein [Mycobacterium
canettii CIPT 140010059]
gi|341600039|emb|CCC62707.1| probable conserved integral membrane protein [Mycobacterium bovis
BCG str. Moreau RDJ]
gi|344217928|gb|AEM98558.1| integral membrane protein [Mycobacterium tuberculosis CTRI-2]
gi|356592177|gb|AET17406.1| Conserved integral membrane protein [Mycobacterium bovis BCG str.
Mexico]
gi|378543381|emb|CCE35652.1| unnamed protein product [Mycobacterium tuberculosis UT205]
gi|380723680|gb|AFE11475.1| putative integral membrane protein [Mycobacterium tuberculosis
RGTB423]
gi|395136798|gb|AFN47957.1| hypothetical protein RVBD_0110 [Mycobacterium tuberculosis H37Rv]
gi|432152817|emb|CCK50026.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140060008]
gi|440579558|emb|CCG09961.1| putative CONSERVED INTEGRAL membrane protein [Mycobacterium
tuberculosis 7199-99]
gi|444893582|emb|CCP42835.1| Probable conserved integral membrane protein [Mycobacterium
tuberculosis H37Rv]
Length = 249
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 79/153 (51%), Gaps = 18/153 (11%)
Query: 114 HEGTSHLDTARTNLFIGRQ------WTNILLAVNVLVYIAQFAT---QDKLLLWGAKINS 164
EG + RT F GRQ T L+++N LV++ Q + +L LW + S
Sbjct: 15 REGARAVRQPRTP-FGGRQRSATPVVTYTLISLNALVFVMQVTVMGLERQLALWPPAVAS 73
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
GQ +RL TSAFLH HL++N ++L +GP +E G R+ +Y SA+ S +
Sbjct: 74 ----GQTYRLVTSAFLHYGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSALGGSVL 129
Query: 225 SYRFC--NSPAVGASGAIFGLVGSFAVFIMRHR 255
Y N+ GASGA+FGL G A F++ R
Sbjct: 130 VYLIAPLNTATAGASGAVFGLFG--ATFMVARR 160
>gi|455648311|gb|EMF27191.1| hypothetical protein H114_20747 [Streptomyces gancidicus BKS 13-15]
Length = 295
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 95/192 (49%), Gaps = 26/192 (13%)
Query: 113 GHEGTSHLDTA-RTNLFIG-------RQWTNILLAVNVLVYIAQFATQD---KLLLWGA- 160
G GT H +A R G R T IL+ +NV V++A + + L L GA
Sbjct: 57 GGGGTGHAPSASRPRTLAGGSVAADPRLITKILIGINVAVFLAVWVEKSLLADLYLVGAW 116
Query: 161 -----KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
+ G+++RL TS F H I H+ N SL +G +E+ G RYL +Y
Sbjct: 117 PPAPFTPTQGVADGEWYRLVTSMFTHEEIWHIGFNMLSLWLLGGPLEQHLGRARYLALYL 176
Query: 216 SSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVII 273
S +A SA++Y + ++GASGA+FGL G+ AV + R R +++ + +++
Sbjct: 177 ISGLAGSALTYLLAGGGTASLGASGAVFGLFGATAVLMRRLRY-------DMRPIVALLV 229
Query: 274 FNMVCSAAFANI 285
N+V + ++ I
Sbjct: 230 INLVITFGWSGI 241
>gi|453381363|dbj|GAC84026.1| rhomboid family protein [Gordonia paraffinivorans NBRC 108238]
Length = 294
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 81/158 (51%), Gaps = 16/158 (10%)
Query: 137 LLAVNVLVYI---AQFATQDK----LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
L+AVNVLV++ AQ D L G + S + G++WRL T+ FLH ++ H+ V
Sbjct: 74 LIAVNVLVFLLCAAQAGFGDPGAAPLFAEGDLLKSDVASGEYWRLLTAGFLHFSVMHIAV 133
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSF 247
N SL +G +E G RYL +Y + + SA F AV GASGAI+GL+G+
Sbjct: 134 NMLSLYILGRDLELALGMFRYLAIYLIALLGGSAAVMLFEADRAVTAGASGAIYGLMGAM 193
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
V I++ R + +I FN+V S + I
Sbjct: 194 LVIILKAR-------VSPVPVLSIIAFNVVLSFSLPGI 224
>gi|256958014|ref|ZP_05562185.1| membrane-associated serine protease [Enterococcus faecalis DS5]
gi|256948510|gb|EEU65142.1| membrane-associated serine protease [Enterococcus faecalis DS5]
Length = 236
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 8/124 (6%)
Query: 134 TNILLAVNVLVYIAQFATQD-----KLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T LL ++++V++ T L+ WGA + L+ + ++WR T FLH H+
Sbjct: 19 TYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNHEYWRFITPMFLHIGFMHI 78
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVG 245
++N ++ IG +E I G RYLG+Y S IA + S+ F NS + GAS A+FGL G
Sbjct: 79 ILNMVTIYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFGTPNSVSAGASTALFGLFG 138
Query: 246 SFAV 249
+F +
Sbjct: 139 AFVI 142
>gi|15839491|ref|NP_334528.1| rhomboid family protein [Mycobacterium tuberculosis CDC1551]
gi|148821302|ref|YP_001286056.1| integral membrane protein [Mycobacterium tuberculosis F11]
gi|253797028|ref|YP_003030029.1| hypothetical protein TBMG_00111 [Mycobacterium tuberculosis KZN
1435]
gi|254233504|ref|ZP_04926830.1| hypothetical protein TBCG_00110 [Mycobacterium tuberculosis C]
gi|289445640|ref|ZP_06435384.1| rhomboid family protein [Mycobacterium tuberculosis CPHL_A]
gi|289747877|ref|ZP_06507255.1| rhomboid family protein [Mycobacterium tuberculosis 02_1987]
gi|308378549|ref|ZP_07482957.2| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
gi|308394636|ref|ZP_07491694.2| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
gi|375294312|ref|YP_005098579.1| hypothetical protein TBSG_00111 [Mycobacterium tuberculosis KZN
4207]
gi|392430521|ref|YP_006471565.1| hypothetical protein TBXG_000111 [Mycobacterium tuberculosis KZN
605]
gi|422815296|ref|ZP_16863514.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
gi|13879598|gb|AAK44342.1| Rhomboid family protein [Mycobacterium tuberculosis CDC1551]
gi|124603297|gb|EAY61572.1| hypothetical protein TBCG_00110 [Mycobacterium tuberculosis C]
gi|148719829|gb|ABR04454.1| conserved integral membrane protein [Mycobacterium tuberculosis
F11]
gi|253318531|gb|ACT23134.1| conserved membrane protein [Mycobacterium tuberculosis KZN 1435]
gi|289418598|gb|EFD15799.1| rhomboid family protein [Mycobacterium tuberculosis CPHL_A]
gi|289688405|gb|EFD55893.1| rhomboid family protein [Mycobacterium tuberculosis 02_1987]
gi|308197784|gb|ADO17908.1| rhomboid protease 1 [Mycobacterium tuberculosis H37Rv]
gi|308197788|gb|ADO17910.1| rhomboid protease 1 [Mycobacterium tuberculosis]
gi|308197792|gb|ADO17912.1| rhomboid protease 1 [Mycobacterium bovis BCG]
gi|308197796|gb|ADO17914.1| rhomboid protease 1 [Mycobacterium bovis]
gi|308352202|gb|EFP41053.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
gi|308367674|gb|EFP56525.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
gi|323717250|gb|EGB26458.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
gi|328456817|gb|AEB02240.1| conserved membrane protein [Mycobacterium tuberculosis KZN 4207]
gi|392051930|gb|AFM47488.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605]
Length = 284
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 89/174 (51%), Gaps = 23/174 (13%)
Query: 114 HEGTSHLDTARTNLFIGRQ------WTNILLAVNVLVYIAQFAT---QDKLLLWGAKINS 164
EG + RT F GRQ T L+++N LV++ Q + +L LW + S
Sbjct: 50 REGARAVRQPRTP-FGGRQRSATPVVTYTLISLNALVFVMQVTVMGLERQLALWPPAVAS 108
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
GQ +RL TSAFLH HL++N ++L +GP +E G R+ +Y SA+ S +
Sbjct: 109 ----GQTYRLVTSAFLHYGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSALGGSVL 164
Query: 225 SYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNM 276
Y N+ GASGA+FGL G A F++ R L +++ + +I+ N+
Sbjct: 165 VYLIAPLNTATAGASGAVFGLFG--ATFMVARRLHL-----DVRWVVALIVINL 211
>gi|386284983|ref|ZP_10062202.1| hypothetical protein SULAR_07038 [Sulfurovum sp. AR]
gi|385344386|gb|EIF51103.1| hypothetical protein SULAR_07038 [Sulfurovum sp. AR]
Length = 226
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 84/163 (51%), Gaps = 11/163 (6%)
Query: 134 TNILLAVNVLVYI------AQFATQDKLLL--WGAKINSL-IDKGQFWRLATSAFLHANI 184
T ILLA + +VY+ + D +L GA L + KG++WRL T+ FLH +
Sbjct: 11 TYILLASSSVVYLFSALLSQSLSDMDMQVLVDMGALFGPLTVLKGEWWRLLTAMFLHGGM 70
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGL 243
HL++N +SL +G E + YL +YF S I +S Y S VGASGAIFG+
Sbjct: 71 THLLMNMFSLYLVGRGAEMYFDTKSYLSIYFFSGIIGGLVSLYIHPVSVGVGASGAIFGV 130
Query: 244 VGSFAVFIMRHRN-ILGGGKEELQHLAKVIIFNMVCSAAFANI 285
G+ A F + HR I K ++ + +I N+V + +I
Sbjct: 131 FGALAGFFLAHREKIASHTKAFMKDFSIIIAINLVIGFSIPSI 173
>gi|288554843|ref|YP_003426778.1| hypothetical protein BpOF4_09150 [Bacillus pseudofirmus OF4]
gi|288546003|gb|ADC49886.1| hypothetical protein BpOF4_09150 [Bacillus pseudofirmus OF4]
Length = 246
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 69/130 (53%), Gaps = 5/130 (3%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
G N + G++WRL T F+H I H++ N +SL GP +E++ G R++ Y +
Sbjct: 45 GIGYNLAVANGEWWRLITPIFMHLTIGHVVFNSFSLVIFGPALEQMLGKFRFIIFYLGTG 104
Query: 219 IASSAMSYRFCN---SPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFN 275
+ ++ +Y P +GASGAIFGL G F ++ ++++ +L + ++I
Sbjct: 105 VIANIATYYLGGLSYPPHLGASGAIFGLFGMFVYLVLFRKDLIDQANSQL--VMTILIIG 162
Query: 276 MVCSAAFANI 285
+V + +NI
Sbjct: 163 LVMTFVNSNI 172
>gi|301300052|ref|ZP_07206273.1| peptidase, S54 family [Lactobacillus salivarius ACS-116-V-Col5a]
gi|300852350|gb|EFK80013.1| peptidase, S54 family [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 220
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 69/120 (57%), Gaps = 6/120 (5%)
Query: 134 TNILLAVNVLVYIAQ--FATQDK---LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+ +N+++YI F + L+ +GAK + I GQ+WRL T F+H + HL+
Sbjct: 12 TYTLIILNIVMYIIMTLFGGTENIVNLVRFGAKYSPYIINGQYWRLITPMFIHIGLQHLL 71
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSF 247
+N +L +G +E I G R+L +Y S I + S+ F +S + GAS A+FG+ GSF
Sbjct: 72 INMITLYFLGTLLENIFGKTRFLIIYLVSGICGNIASFAFNFSSISAGASTALFGMFGSF 131
>gi|387927974|ref|ZP_10130652.1| hypothetical protein PB1_05942 [Bacillus methanolicus PB1]
gi|387587560|gb|EIJ79882.1| hypothetical protein PB1_05942 [Bacillus methanolicus PB1]
Length = 201
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 86/159 (54%), Gaps = 11/159 (6%)
Query: 134 TNILLAVNVLVYIAQFAT--QDKLLLWG-AKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
+I++ +NVL+Y ++LL A IN I +G++WRL T LH+ H++ N
Sbjct: 18 VSIIVGLNVLLYFFTILPIFPNRLLFEKLAGINLYIAEGEYWRLVTPILLHSGFPHMLFN 77
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA----VGASGAIFGLVGS 246
+SL GP +E+I G +++ +YFS+ IA++ + F P VG+SGAIFGL G
Sbjct: 78 SFSLILFGPALERIIGKNKFVILYFSTGIAANIAT--FFVKPLTFIHVGSSGAIFGLFGF 135
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
+ + +++L K+ Q + + +++ + NI
Sbjct: 136 YIAMTLFKKHLL--SKQNTQIILTITAISLIMTFVQPNI 172
>gi|257064883|ref|YP_003144555.1| membrane protein [Slackia heliotrinireducens DSM 20476]
gi|256792536|gb|ACV23206.1| uncharacterized membrane protein [Slackia heliotrinireducens DSM
20476]
Length = 267
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 71/131 (54%), Gaps = 12/131 (9%)
Query: 137 LLAVNVLVY--IAQFATQDKLLLWGAKI---NSLIDKGQFWRLATSAFLHANIAHLMVNC 191
L+ +NV+V+ + L+ A + +SL+D GQ++ L TS FLH + HL+ N
Sbjct: 14 LIVINVVVFAVLEVLGMTQGYTLYNAGVLTTSSLLD-GQYYTLITSMFLHGGLMHLLCNM 72
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-----NSPAVGASGAIFGLVGS 246
++ IG +E + GP R+L +YF S IA S N VGASGA+FGL G+
Sbjct: 73 ITMYYIGTVIEDVFGPVRFLIIYFLSGIAGGLTSMAVMIAAGENGGVVGASGALFGLFGA 132
Query: 247 FAVFIMR-HRN 256
+ ++R HR
Sbjct: 133 YGYLLVREHRK 143
>gi|167763036|ref|ZP_02435163.1| hypothetical protein BACSTE_01401 [Bacteroides stercoris ATCC
43183]
gi|167699376|gb|EDS15955.1| peptidase, S54 family [Bacteroides stercoris ATCC 43183]
Length = 771
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 15/167 (8%)
Query: 130 GRQWTNILLAVNVLVYIAQ--------FATQDKLLLWGAKINSLIDKGQFWRLATSAFLH 181
G T +L+ +N+ +++ T ++ WGA L G +WR T F+H
Sbjct: 349 GNMATPLLVYINIALFVVMSICGVSLLAPTGISIIKWGADFGPLTLTGDWWRTITCNFIH 408
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFS----SAIASSAMSYRFCNSPAVGAS 237
+ H+++N Y+L IG +E++ G RR + YF SA+AS AM + + GAS
Sbjct: 409 IGVIHVLMNMYALLYIGIFLEQLIGGRRLISAYFLTGLFSALASLAMHPE---TISAGAS 465
Query: 238 GAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFAN 284
G+IFGL G F +++ H I G ++ L + +F + S A A
Sbjct: 466 GSIFGLYGIFLSYLVFHHRIEKGQRKSLLYSIGFFVFYNLMSGARAE 512
>gi|304384713|ref|ZP_07367059.1| rhomboid family integral membrane protein [Pediococcus acidilactici
DSM 20284]
gi|418068986|ref|ZP_12706266.1| membrane-associated serine protease [Pediococcus acidilactici
MA18/5M]
gi|304328907|gb|EFL96127.1| rhomboid family integral membrane protein [Pediococcus acidilactici
DSM 20284]
gi|357537719|gb|EHJ21742.1| membrane-associated serine protease [Pediococcus acidilactici
MA18/5M]
Length = 229
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 93/171 (54%), Gaps = 14/171 (8%)
Query: 120 LDTARTNL---FIGRQWTNILLAVNVLVYI----AQFATQDKLLLW-GAKINSLIDKGQF 171
+D + NL F G T L+A+NVLVY+ A +T +L+ GA + ++I G
Sbjct: 1 MDKTKINLKNFFAGPFMTITLVALNVLVYLWLTLAGGSTDLTVLVTHGAMVPAMIKDGAG 60
Query: 172 W-RLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC- 229
W L TS F+H HL+ N +L IG +E++ G R+L +Y S I ++ +S F
Sbjct: 61 WASLFTSMFVHIGFEHLLFNMITLYFIGRLLEQVIGHGRFLLIYLLSGIFANVVSLAFAA 120
Query: 230 -NSPAVGASGAIFGLVGSFAVFIMRHRN---ILGGGKEELQHLAKVIIFNM 276
NS + GASGAIFG++G + + ++RN + G G++ L A I+ M
Sbjct: 121 PNSISAGASGAIFGIIGVWIMMAEQYRNYPFLAGMGRQMLIFSALGIVSGM 171
>gi|331701529|ref|YP_004398488.1| peptidase S54, rhomboid domain-containing protein [Lactobacillus
buchneri NRRL B-30929]
gi|329128872|gb|AEB73425.1| Peptidase S54, rhomboid domain protein [Lactobacillus buchneri NRRL
B-30929]
Length = 220
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 58/93 (62%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GAK N LI G++WRL T F+H H+++N +L IG +E++ G R+ ++
Sbjct: 37 LVEFGAKYNPLIRAGEYWRLITPMFIHIGFTHILMNGITLYFIGQYVEQLFGHWRFAVIF 96
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
F S I + S+ F +S + GAS AIFGL G+F
Sbjct: 97 FVSGIMGNLGSFAFTDSLSAGASTAIFGLFGAF 129
>gi|194466614|ref|ZP_03072601.1| Rhomboid family protein [Lactobacillus reuteri 100-23]
gi|194453650|gb|EDX42547.1| Rhomboid family protein [Lactobacillus reuteri 100-23]
Length = 219
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 77/132 (58%), Gaps = 7/132 (5%)
Query: 134 TNILLAVNVLVY----IAQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T IL+ VLVY A +T +LL GA+ SLI +G++WRL + FLH ++HL+
Sbjct: 12 TLILIVFQVLVYCWLVYAGGSTNTVILLKMGARSTSLIREGEWWRLVSPVFLHVGLSHLV 71
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLVGSF 247
VN +L IG +E+ G R + +YF SAI + S F + + GAS AIFGL G+F
Sbjct: 72 VNSVTLLYIGRYIEEFFGHWRMVVIYFISAIFGNLASAVFMPLTISAGASTAIFGLFGAF 131
Query: 248 AVF-IMRHRNIL 258
+ + HRNI+
Sbjct: 132 LMLGVCFHRNIV 143
>gi|406027090|ref|YP_006725922.1| membrane-associated serine protease [Lactobacillus buchneri CD034]
gi|405125579|gb|AFS00340.1| membrane-associated serine protease [Lactobacillus buchneri CD034]
Length = 220
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 58/93 (62%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GAK N LI G++WRL T F+H H+++N +L IG +E++ G R+ ++
Sbjct: 37 LVEFGAKYNPLIRAGEYWRLITPMFIHIGFTHILMNGITLYFIGQYVEQLFGHWRFAVIF 96
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
F S I + S+ F +S + GAS AIFGL G+F
Sbjct: 97 FVSGIMGNLGSFAFTDSLSAGASTAIFGLFGAF 129
>gi|162449650|ref|YP_001612017.1| hypothetical protein sce1379 [Sorangium cellulosum So ce56]
gi|161160232|emb|CAN91537.1| hypothetical protein sce1379 [Sorangium cellulosum So ce56]
Length = 565
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 61/104 (58%), Gaps = 2/104 (1%)
Query: 157 LW--GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
LW GA + G+ +RL SAFLHA+ HL VN +L S GP +E + GPRR+L +Y
Sbjct: 208 LWRMGANSGEAVRHGELYRLLASAFLHADPMHLFVNMLALWSFGPMLEALLGPRRFLLLY 267
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNIL 258
+SA+ S S + +VGASGAI+GL+ + +R +L
Sbjct: 268 GASALGGSLASAMLEDRWSVGASGAIWGLMTAGIGVALRPHGLL 311
>gi|71908004|ref|YP_285591.1| rhomboid-like protein [Dechloromonas aromatica RCB]
gi|71847625|gb|AAZ47121.1| Rhomboid-like protein [Dechloromonas aromatica RCB]
Length = 358
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 70/133 (52%), Gaps = 10/133 (7%)
Query: 134 TNILLAVNVLVYIAQFATQDKL--------LLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T +L+A NVL+++A L L WGA G++WRL ++ FLH I
Sbjct: 18 TPLLIAANVLIFVAMLLNGASLWHAQNTIQLAWGANFGPATQDGEWWRLGSALFLHFGIL 77
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGL 243
HL++N +L +G +E++ G R+ +Y ++ + + +S AV GASGAIFG+
Sbjct: 78 HLLLNMAALWDVGQWVERMYGTLRFAVIYLTAGLTGNLLSLVANAGAAVSGGASGAIFGI 137
Query: 244 VGSFAVFIMRHRN 256
G+ ++ R+
Sbjct: 138 YGALLSYLWLERS 150
>gi|375092943|ref|ZP_09739208.1| putative membrane protein [Saccharomonospora marina XMU15]
gi|374653676|gb|EHR48509.1| putative membrane protein [Saccharomonospora marina XMU15]
Length = 309
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 74/136 (54%), Gaps = 17/136 (12%)
Query: 134 TNILLAVNVLVYI-AQFATQDKL-----------LLWGAKINSLIDKGQFWRLATSAFLH 181
T +L+A+N+LVY+ QD + +LW I + ++WRL TS FLH
Sbjct: 95 TPVLIALNLLVYVLTAVQAQDFMRNDVSRLFNDGVLWPVGIAA---ADEWWRLVTSGFLH 151
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGA 239
+ H+ +N +L +G +E + G R+L VYF S + SA + F N+ GASGA
Sbjct: 152 FGLLHIGMNMLALWILGRDLELLLGKVRFLAVYFVSMLGGSAAVFAFGAVNTGTAGASGA 211
Query: 240 IFGLVGSFAVFIMRHR 255
I+GL+G+ V ++R R
Sbjct: 212 IYGLMGAILVAVLRLR 227
>gi|433640241|ref|YP_007286000.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070008]
gi|432156789|emb|CCK54054.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070008]
Length = 249
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 78/153 (50%), Gaps = 18/153 (11%)
Query: 114 HEGTSHLDTARTNLFIGRQ------WTNILLAVNVLVYIAQFAT---QDKLLLWGAKINS 164
EG + RT F GRQ T L+ +N LV++ Q + +L LW + S
Sbjct: 15 REGARAVRQPRTP-FGGRQRSATPVVTYTLILLNALVFVMQVTVMGLERQLALWPPAVAS 73
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
GQ +RL TSAFLH HL++N ++L +GP +E G R+ +Y SA+ S +
Sbjct: 74 ----GQTYRLVTSAFLHYGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSALGGSVL 129
Query: 225 SYRFC--NSPAVGASGAIFGLVGSFAVFIMRHR 255
Y N+ GASGA+FGL G A F++ R
Sbjct: 130 VYLIAPLNTATAGASGAVFGLFG--ATFMVARR 160
>gi|295702423|ref|YP_003595498.1| S54 (rhomboid) family peptidase [Bacillus megaterium DSM 319]
gi|294800082|gb|ADF37148.1| peptidase, S54 (rhomboid) family protein [Bacillus megaterium DSM
319]
Length = 200
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 64/106 (60%), Gaps = 2/106 (1%)
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+NSLI +G +WRL T FLH + +HL+ N +SL +GP E+I ++L Y +
Sbjct: 49 VNSLISQGDYWRLFTPIFLHLSFSHLLFNSFSLFLLGPGAERILSSYKFLLFYLTCGFLG 108
Query: 222 SAMSYRFCNS--PAVGASGAIFGLVGSFAVFIMRHRNILGGGKEEL 265
+ +++ +S VGASGAIFGL+G + +++ +++L +++
Sbjct: 109 NIVTFLTQSSFYSHVGASGAIFGLLGFYLYLVIKQKHMLSQSNQQI 154
>gi|417800856|ref|ZP_12447962.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21318]
gi|334277580|gb|EGL95806.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21318]
Length = 289
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N S
Sbjct: 166 VNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNMLS 224
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIM 252
L G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +
Sbjct: 225 LFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGSIFAMMY 284
Query: 253 RHRNI 257
++NI
Sbjct: 285 VYKNI 289
>gi|433460288|ref|ZP_20417921.1| S54 family peptidase [Halobacillus sp. BAB-2008]
gi|432191744|gb|ELK48676.1| S54 family peptidase [Halobacillus sp. BAB-2008]
Length = 253
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 60/106 (56%), Gaps = 7/106 (6%)
Query: 158 WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
WG +N + G++WRL T FLHA AH + N +SL GP +E++ G +++ +Y +
Sbjct: 46 WGMGVNVFVLNGEYWRLVTPIFLHAGFAHALFNSFSLVLFGPALEQMLGKVKFIALYLFA 105
Query: 218 AIASSAMSYRFCNSPA-----VGASGAIFGLVGSFAVFIMRHRNIL 258
IA + + F P+ +GASGAIFG+ G + + ++++
Sbjct: 106 GIAGNVGT--FIVDPSAYYAHLGASGAIFGIFGVYIFMVWNRKHLI 149
>gi|427439986|ref|ZP_18924515.1| rhomboid family integral membrane protein [Pediococcus lolii NGRI
0510Q]
gi|425787818|dbj|GAC45303.1| rhomboid family integral membrane protein [Pediococcus lolii NGRI
0510Q]
Length = 229
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 93/171 (54%), Gaps = 14/171 (8%)
Query: 120 LDTARTNL---FIGRQWTNILLAVNVLVYI----AQFATQDKLLLW-GAKINSLIDKGQF 171
+D + NL F G T L+A+NVLVY+ A +T +L+ GA + ++I G
Sbjct: 1 MDKTKINLKNFFAGPFVTITLVALNVLVYLWLTLAGGSTDLTVLVTHGAMVPAMIKDGAG 60
Query: 172 W-RLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC- 229
W L TS F+H HL+ N +L IG +E++ G R+L +Y S I ++ +S F
Sbjct: 61 WASLFTSMFVHIGFEHLLFNMITLYFIGRLLEQVIGHGRFLLIYLLSGIFANVVSLAFAA 120
Query: 230 -NSPAVGASGAIFGLVGSFAVFIMRHRN---ILGGGKEELQHLAKVIIFNM 276
NS + GASGAIFG++G + + ++RN + G G++ L A I+ M
Sbjct: 121 PNSISAGASGAIFGIIGVWIMMAEQYRNYPFLAGMGRQMLIFSALGIVSGM 171
>gi|260222883|emb|CBA32895.1| hypothetical protein Csp_B16320 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 364
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 71/139 (51%), Gaps = 10/139 (7%)
Query: 134 TNILLAVNVLVYIA--------QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T L+ +NV+V++A A L WGA GQ+WRL ++ F+H +
Sbjct: 27 TAGLMVLNVMVFLAIALAGGGWWHAVNGVQLDWGANFAPATQDGQWWRLLSAMFIHFGVW 86
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGL 243
HL VN ++L IG +E + G R+ +Y + + + +S + AV GASGA+FGL
Sbjct: 87 HLAVNMWALWDIGRLLETLLGRWRFAALYLGAGVCGNLLSLVVQGNRAVSGGASGAVFGL 146
Query: 244 VGSFAVFIMRHRNILGGGK 262
G+ VF+ R + G+
Sbjct: 147 YGALLVFLWVERKQVEAGE 165
>gi|270290405|ref|ZP_06196630.1| membrane-associated serine protease [Pediococcus acidilactici 7_4]
gi|270281186|gb|EFA27019.1| membrane-associated serine protease [Pediococcus acidilactici 7_4]
Length = 222
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 89/162 (54%), Gaps = 11/162 (6%)
Query: 126 NLFIGRQWTNILLAVNVLVYI----AQFATQDKLLLW-GAKINSLIDKGQFW-RLATSAF 179
N F G T L+A+NVLVY+ A +T +L+ GA + ++I G W L TS F
Sbjct: 3 NFFAGPFMTITLVALNVLVYLWLTLAGGSTDLTVLVTHGAMVPAMIKDGAGWASLFTSMF 62
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGAS 237
+H HL+ N +L IG +E++ G R+L +Y S I ++ +S F NS + GAS
Sbjct: 63 VHIGFEHLLFNMITLYFIGRLLEQVIGHGRFLLIYLLSGIFANVVSLAFAAPNSISAGAS 122
Query: 238 GAIFGLVGSFAVFIMRHRN---ILGGGKEELQHLAKVIIFNM 276
GAIFG++G + + ++RN + G G++ L A I+ M
Sbjct: 123 GAIFGIIGVWIMMAEQYRNYPFLAGMGRQMLIFSALGIVSGM 164
>gi|296087301|emb|CBI33675.3| unnamed protein product [Vitis vinifera]
Length = 523
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 79/147 (53%), Gaps = 9/147 (6%)
Query: 135 NILLAVNVLVYIAQFATQDK---------LLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
+IL+++N+ V + + A+ + L++GAKIN LI G++WRL T FLH+ I
Sbjct: 282 SILVSINIAVVLFELASPIRNSDLELSSLPLMYGAKINDLILVGEWWRLVTPMFLHSGIF 341
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
H+ + C+ L + GP + + G + +Y I+ + S+ VG +G +F ++G
Sbjct: 342 HVALGCWVLLTFGPQVCRGYGSFTFFLIYILGGISGNLTSFLHTPDLTVGGTGPVFAIIG 401
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVI 272
++ + +++++++ E + +I
Sbjct: 402 AWVIHQIQNKDVIAKDVSESMYHKAII 428
>gi|217077443|ref|YP_002335161.1| integral membrane protein, Rhomboid family [Thermosipho africanus
TCF52B]
gi|217037298|gb|ACJ75820.1| integral membrane protein, Rhomboid family [Thermosipho africanus
TCF52B]
Length = 223
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 69/117 (58%), Gaps = 8/117 (6%)
Query: 137 LLAVNVLVY----IAQFATQDK---LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
L+ VNVL+ I +F ++ L++GA+ L+ GQ++R+ TS F+H HL+
Sbjct: 9 LIFVNVLILFLIEIFKFFIPNEAVLYLMFGAQYGPLVSHGQWFRIVTSMFVHGGFIHLIF 68
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS-AMSYRFCNSPAVGASGAIFGLVG 245
N Y+L +G +E + G ++L YF S I + A + NS +VGASGAIFGL+G
Sbjct: 69 NMYALFFLGRIVENVYGTEKFLTFYFLSGIVGNLATQIFYYNSFSVGASGAIFGLIG 125
>gi|205374009|ref|ZP_03226809.1| hypothetical protein Bcoam_12572 [Bacillus coahuilensis m4-4]
Length = 392
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 59/101 (58%), Gaps = 5/101 (4%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK N LI +G++WR T FLH HL++N ++L IG +EKI G R+L
Sbjct: 208 ETLVFFGAKFNPLILEGEWWRFITPIFLHIGFFHLLMNTFALVLIGREVEKIFGKWRFLF 267
Query: 213 VYFSSAIASSAMSYRFCNSP---AVGASGAIFGLVGSFAVF 250
+Y + I S+ F +P + GASGAIFG G+ F
Sbjct: 268 IYLLAGIIGCIASFYF--NPVGLSAGASGAIFGCFGALLYF 306
>gi|429205379|ref|ZP_19196656.1| Integral membrane protein, Rhomboid family [Lactobacillus
saerimneri 30a]
gi|428146451|gb|EKW98690.1| Integral membrane protein, Rhomboid family [Lactobacillus
saerimneri 30a]
Length = 224
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 85/152 (55%), Gaps = 8/152 (5%)
Query: 134 TNILLAVNVLVYI----AQFATQDKLL-LWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T IL+ +N++V++ A +T ++L ++GAK + +G++WRL + FLH I HL
Sbjct: 24 TYILIGINLVVFMGTVFAGGSTDIRVLYMFGAKFTPALLQGEWWRLIAAMFLHDGIGHLF 83
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSF 247
+N +L IGP +E G R L +Y S + + +S + + AVGASGA+FGL G++
Sbjct: 84 INMITLYFIGPEIEDHYGHARMLVIYLLSGLYGNLLSAFWAPTTLAVGASGALFGLFGAY 143
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMVCS 279
I+ H++ + + + +I N+V
Sbjct: 144 --LILGHQSTDAQIQAQARQFLLFVILNVVLG 173
>gi|381182764|ref|ZP_09891551.1| rhomboid family membrane protein [Listeriaceae bacterium TTU
M1-001]
gi|380317332|gb|EIA20664.1| rhomboid family membrane protein [Listeriaceae bacterium TTU
M1-001]
Length = 516
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 55/98 (56%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GAK N LI +G++WR + FLH + H+ NC + +GP EKI G RY+ +
Sbjct: 210 LVEYGAKFNPLIYQGEWWRFISPIFLHTGLMHIAANCLMIYIVGPWAEKIYGRWRYIVIL 269
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIM 252
IA + S+ + AVG+S A+F L G+ ++
Sbjct: 270 LVGGIAGNIASFALNTNVAVGSSTAVFALFGALLYLVV 307
>gi|409392616|ref|ZP_11244170.1| hypothetical protein GORBP_101_00320 [Gordonia rubripertincta NBRC
101908]
gi|403197559|dbj|GAB87404.1| hypothetical protein GORBP_101_00320 [Gordonia rubripertincta NBRC
101908]
Length = 241
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 11/144 (7%)
Query: 123 ARTNLFIGRQW-TNILLAVNVLVYI------AQFATQDKLLLW--GAKINSLIDKGQFWR 173
A T L G+ + T L+ +N+L+++ F ++ G + S + G++WR
Sbjct: 5 ATTRLPAGKPYVTYTLIGINILIFLLCAVQAGSFGDPGAAAIFSSGDLLKSDVAAGEYWR 64
Query: 174 LATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA 233
L TS FLH ++ H+ VN SL +G +E G RY+ VY + + SA F N A
Sbjct: 65 LLTSGFLHFSVMHVAVNMLSLYILGRDLELALGMSRYVAVYLIALLGGSAAVMLFENDRA 124
Query: 234 V--GASGAIFGLVGSFAVFIMRHR 255
+ GASGAI+GL+G+ V I++ R
Sbjct: 125 LTAGASGAIYGLMGAMLVIILKAR 148
>gi|158337464|ref|YP_001518639.1| rhomboid family protein [Acaryochloris marina MBIC11017]
gi|158307705|gb|ABW29322.1| rhomboid family protein [Acaryochloris marina MBIC11017]
Length = 537
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 55/101 (54%), Gaps = 6/101 (5%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
GA I S + G +WRL +AFLH I HL +N + L +GP +EK+ G R++ Y +A
Sbjct: 367 GALIPSEVVAGDWWRLLAAAFLHFGIEHLSLNMFGLGLLGPFVEKMLGTWRFIVSYLMTA 426
Query: 219 IASSAMSYR------FCNSPAVGASGAIFGLVGSFAVFIMR 253
I S F AVGASGAI GL+G+ A MR
Sbjct: 427 IGSMLTLTLLTITGIFVTPAAVGASGAIMGLIGTEAAIQMR 467
>gi|328957643|ref|YP_004375029.1| membrane endopeptidase [Carnobacterium sp. 17-4]
gi|328673967|gb|AEB30013.1| membrane endopeptidase [Carnobacterium sp. 17-4]
Length = 229
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 9/120 (7%)
Query: 134 TNILLAVNVLVYIAQFATQD-------KLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T LL + +L ++ T D L+ +GAK N I G++WRL T FLH H
Sbjct: 13 TYALLIIQILAFVLM--TLDGGSTNVATLIKYGAKFNPYIVLGEWWRLITPMFLHIGFIH 70
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
L++N L +G +E + G R+ G+Y S IA + S+ F ++ + GAS A+FGL GS
Sbjct: 71 LLMNSVILYYLGEQLEGMFGHLRFAGIYLLSGIAGNLASFAFSDALSAGASTALFGLFGS 130
>gi|336395216|ref|ZP_08576615.1| membrane-associated serine protease [Lactobacillus farciminis KCTC
3681]
Length = 225
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 74/127 (58%), Gaps = 7/127 (5%)
Query: 137 LLAVNVLVYIAQF---ATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
LLA+ V V++ + +Q+ L L +GAK N L+ +GQ+WRL T FLH I H+++N
Sbjct: 16 LLAITVAVFLLETISGGSQNLLTLIHFGAKTNYLVQEGQWWRLITPIFLHIGIFHILMNG 75
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAV 249
++L +G +E + G R+L VY S I + S+ F N+ + GAS ++FG+ +F
Sbjct: 76 FTLLYVGQILEPMIGHWRFLIVYMLSGIMGNLASFAFGANNAISAGASTSLFGMFAAFLS 135
Query: 250 FIMRHRN 256
+ +R
Sbjct: 136 LAIIYRE 142
>gi|310641361|ref|YP_003946119.1| rhomboid family protein [Paenibacillus polymyxa SC2]
gi|386040403|ref|YP_005959357.1| rhomboid protease gluP Intramembrane serine protease [Paenibacillus
polymyxa M1]
gi|309246311|gb|ADO55878.1| Rhomboid family protein [Paenibacillus polymyxa SC2]
gi|343096441|emb|CCC84650.1| rhomboid protease gluP Intramembrane serine protease [Paenibacillus
polymyxa M1]
Length = 207
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 86/162 (53%), Gaps = 12/162 (7%)
Query: 134 TNILLAVNVLVYIA---QFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T ++L +N++++I Q +++ L L +GA IN Q WR ++ FLHA HL+
Sbjct: 19 TCLILLINIVMFIVLTVQGGSENSLTLIRYGALINEAPFTDQLWRYVSAMFLHAGFDHLL 78
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA-----VGASGAIFGL 243
N +++ P +E++ G RY+ +Y + + + +S N A VGASGAI+G+
Sbjct: 79 FNSFAILVFAPPLERLLGSLRYVLLYLVTGVVGNILSIAHYNMVAETTVSVGASGAIYGI 138
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
G+F + R+++ + L ++ F ++ S A ANI
Sbjct: 139 YGAFLYVALFQRSLMDDASR--KTLYTLLGFGILFSFAVANI 178
>gi|225451989|ref|XP_002279924.1| PREDICTED: uncharacterized protein LOC100256693 [Vitis vinifera]
Length = 486
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 79/147 (53%), Gaps = 9/147 (6%)
Query: 135 NILLAVNVLVYIAQFATQDK---------LLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
+IL+++N+ V + + A+ + L++GAKIN LI G++WRL T FLH+ I
Sbjct: 245 SILVSINIAVVLFELASPIRNSDLELSSLPLMYGAKINDLILVGEWWRLVTPMFLHSGIF 304
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
H+ + C+ L + GP + + G + +Y I+ + S+ VG +G +F ++G
Sbjct: 305 HVALGCWVLLTFGPQVCRGYGSFTFFLIYILGGISGNLTSFLHTPDLTVGGTGPVFAIIG 364
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVI 272
++ + +++++++ E + +I
Sbjct: 365 AWVIHQIQNKDVIAKDVSESMYHKAII 391
>gi|441213690|ref|ZP_20975936.1| peptidase, S54 family [Mycobacterium smegmatis MKD8]
gi|440625654|gb|ELQ87500.1| peptidase, S54 family [Mycobacterium smegmatis MKD8]
Length = 250
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 82/149 (55%), Gaps = 15/149 (10%)
Query: 134 TNILLAVNVLVYIAQFAT---QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+AVNVL+++ + A + +L L A I + +++RL TS FLH HL+ N
Sbjct: 40 TYTLIAVNVLMFVLELAAGALKRELALQPASIAA---YDEYYRLVTSMFLHYGAMHLLFN 96
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFA 248
++L +GP +E+ G R+ +Y S + S + Y NS GASGAIFGL G+
Sbjct: 97 MWALYVVGPPLEQWLGRLRFGVLYALSGLGGSVLVYMLSPLNSATAGASGAIFGLFGAIF 156
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMV 277
V + RH N+ +++ + +++ N+V
Sbjct: 157 V-VARHLNL------DVRAIGVIVVINLV 178
>gi|224476658|ref|YP_002634264.1| hypothetical protein Sca_1171 [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222421265|emb|CAL28079.1| putative membrane protein [Staphylococcus carnosus subsp. carnosus
TM300]
Length = 486
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 68/116 (58%), Gaps = 6/116 (5%)
Query: 137 LLAVNVLVYIAQFA-----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
L+ +N++V++ F + +L+ G ++ + G+++RL TS FLH N H+++N
Sbjct: 162 LITINIIVWLFMFLVLNAFSDTRLIDLGGLVHFNVVHGEWYRLVTSMFLHFNFEHILMNM 221
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGS 246
SL G +E I G + LG+Y S I + +S NS +VGASGAIFGL+GS
Sbjct: 222 LSLFIFGKLVEAIVGHWKMLGIYLISGIFGNLVSLAIDNSSISVGASGAIFGLIGS 277
>gi|407797237|ref|ZP_11144183.1| S54 family peptidase [Salimicrobium sp. MJ3]
gi|407018431|gb|EKE31157.1| S54 family peptidase [Salimicrobium sp. MJ3]
Length = 204
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 83/156 (53%), Gaps = 11/156 (7%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
+ILL + + V+ FA + K L G N L+ +G++WRL T FLHA ++H + N ++L
Sbjct: 25 HILLWLIMDVFSFPFAVEWKQL--GVGNNFLVSQGEYWRLLTPIFLHAGLSHTLFNSFTL 82
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA-----VGASGAIFGLVGSFAV 249
GP +E++ G +++ Y + IA + +Y P +GASGAIFGL G +A
Sbjct: 83 VLFGPALERMLGKVKFIIAYLLAGIAGNIGTY--AADPGAFHSHLGASGAIFGLFGIYAY 140
Query: 250 FIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
+ +++L + Q + I+ ++ + NI
Sbjct: 141 MLFARKDLL--DQASSQIIGVFIVLGLIMTFLQPNI 174
>gi|377572160|ref|ZP_09801257.1| hypothetical protein GOTRE_152_00160 [Gordonia terrae NBRC 100016]
gi|377530656|dbj|GAB46422.1| hypothetical protein GOTRE_152_00160 [Gordonia terrae NBRC 100016]
Length = 237
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 72/131 (54%), Gaps = 9/131 (6%)
Query: 134 TNILLAVNVLVY---IAQFATQD----KLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T L+AVN+L++ + Q D + G + S + G++WRL T+ FLH ++ H
Sbjct: 14 TYALIAVNLLIFALCVLQAGVGDPGGASIFSAGDLLKSDVAAGEYWRLLTAGFLHFSVMH 73
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLV 244
+ VN SL +G +E G RYL VY + + SA F N A+ GASGAI+GL+
Sbjct: 74 VAVNMLSLYILGRDLELALGIGRYLAVYVIALLGGSAAVMLFENDRALTAGASGAIYGLM 133
Query: 245 GSFAVFIMRHR 255
G+ V I++ R
Sbjct: 134 GAMLVIILKAR 144
>gi|419760008|ref|ZP_14286293.1| integral membrane protein, Rhomboid family [Thermosipho africanus
H17ap60334]
gi|407515047|gb|EKF49833.1| integral membrane protein, Rhomboid family [Thermosipho africanus
H17ap60334]
Length = 223
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 69/117 (58%), Gaps = 8/117 (6%)
Query: 137 LLAVNV----LVYIAQFATQDK---LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
L+ VNV L+ I +F ++ L++GA+ L+ GQ++R+ TS F+H HL+
Sbjct: 9 LIFVNVFILFLIEIFKFFIPNEAVLYLMFGAQYGPLVSHGQWFRIVTSMFVHGGFIHLIF 68
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS-AMSYRFCNSPAVGASGAIFGLVG 245
N Y+L +G +E + G ++L YF S I + A + NS +VGASGAIFGL+G
Sbjct: 69 NMYALFFLGRIVENVYGTEKFLTFYFLSGIVGNLATQIFYYNSFSVGASGAIFGLIG 125
>gi|375098380|ref|ZP_09744643.1| putative membrane protein [Saccharomonospora cyanea NA-134]
gi|374659112|gb|EHR58990.1| putative membrane protein [Saccharomonospora cyanea NA-134]
Length = 333
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 26/165 (15%)
Query: 136 ILLAVNVLVY-IAQFATQDKL-----------LLWGAKINSLIDKGQFWRLATSAFLHAN 183
+L+AVNV+VY + F +D + +LW ++ L D ++WRL TS FLH
Sbjct: 113 LLIAVNVIVYALTVFQARDVMSNHNSPVFNDGVLW-PEVVVLFD--EWWRLLTSGFLHYG 169
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV---GASGAI 240
+ HL +N +L +G +E + G R+L VYF S A A + F PA GASGAI
Sbjct: 170 LLHLAMNMLALWVLGRDLEMLLGRVRFLAVYFLSMFAGGAAVFVF-GDPATGTAGASGAI 228
Query: 241 FGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
+GL+G+ V ++R R +I+ N++ S + NI
Sbjct: 229 YGLMGAILVAVLRLR-------LNPTTAIGIIVLNVIISVSIPNI 266
>gi|308068481|ref|YP_003870086.1| hypothetical protein PPE_01711 [Paenibacillus polymyxa E681]
gi|305857760|gb|ADM69548.1| Uncharacterized membrane protein [Paenibacillus polymyxa E681]
Length = 207
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 86/162 (53%), Gaps = 12/162 (7%)
Query: 134 TNILLAVNVLVYIA---QFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T ++L +N++++I Q ++ L L +GA IN Q WR ++ FLHA HL+
Sbjct: 19 TCLILLINIVMFIVLTVQGGSESSLTLIRYGALINEAPFTDQLWRYVSAMFLHAGFDHLL 78
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-----SPAVGASGAIFGL 243
N +++ P +E++ G RY+ +Y + I + +S N + +VGASGAI+G+
Sbjct: 79 FNSFAILVFAPPLERLLGSFRYVLLYLVTGIVGNILSIAHYNMMTETTVSVGASGAIYGI 138
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
G+F + R+++ + L ++ F ++ S A ANI
Sbjct: 139 YGAFLYVALFQRSLMDDASR--KTLYTLLGFGILFSFAVANI 178
>gi|319651546|ref|ZP_08005673.1| hypothetical protein HMPREF1013_02285 [Bacillus sp. 2_A_57_CT2]
gi|317396613|gb|EFV77324.1| hypothetical protein HMPREF1013_02285 [Bacillus sp. 2_A_57_CT2]
Length = 506
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 5/123 (4%)
Query: 133 WTNILLAVNVLVYIAQFA-----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T I + + V V++ A L+ +GAK N LI G++WR T LH + HL
Sbjct: 181 FTYIFIFIQVAVFLVLEAMGGSTDTSTLIKYGAKFNPLILDGEWWRFLTPIVLHIGLLHL 240
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
++N +L +G +E++ G R+L +Y ++ + S+ F + + GASGAIFG G+
Sbjct: 241 LMNTLALFYLGSAVERVYGNLRFLFIYLAAGFGGTLASFIFSPTLSAGASGAIFGCFGAL 300
Query: 248 AVF 250
F
Sbjct: 301 LYF 303
>gi|89099491|ref|ZP_01172367.1| hypothetical protein B14911_19975 [Bacillus sp. NRRL B-14911]
gi|89085877|gb|EAR65002.1| hypothetical protein B14911_19975 [Bacillus sp. NRRL B-14911]
Length = 196
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 69/128 (53%), Gaps = 4/128 (3%)
Query: 160 AKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
A +N I +G+ WRLAT F+H+ H++ N +SL GP +E+I G ++ G+Y + I
Sbjct: 47 AGVNLFIREGEVWRLATPIFMHSGFTHVLFNSFSLVLFGPALERIAGKAKFAGIYLITGI 106
Query: 220 ASSAMSYRF--CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMV 277
+++ + VG+SGAIFGL G FA ++++ +E Q + + + ++
Sbjct: 107 SANVATLLLEPLTYTHVGSSGAIFGLFGFFAAVAYFRKDLM--SRENSQIIITIAVIGLI 164
Query: 278 CSAAFANI 285
+ NI
Sbjct: 165 MTFIQPNI 172
>gi|14591283|ref|NP_143361.1| hypothetical protein PH1497 [Pyrococcus horikoshii OT3]
gi|3257922|dbj|BAA30605.1| 197aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 197
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 66/114 (57%), Gaps = 5/114 (4%)
Query: 137 LLAVNVLVYIAQFATQ-DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLN 195
L+ + LV+I + D+ + A+IN L+ GQ+WRL T+ FLH H +N + L
Sbjct: 16 LIILTTLVFIYELVVGFDRAIQELAQINGLVTLGQWWRLITAIFLHMGFIHFGLNIFWLF 75
Query: 196 SIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV---GASGAIFGLVGS 246
+G +E I G RR+L V+F+SA+ + +S P V GASG +FG+VG+
Sbjct: 76 YLGIDLEGIVGTRRFLTVFFASALVGNLLS-LITLPPYVASGGASGGLFGVVGA 128
>gi|227530504|ref|ZP_03960553.1| S54 family peptidase [Lactobacillus vaginalis ATCC 49540]
gi|227349609|gb|EEJ39900.1| S54 family peptidase [Lactobacillus vaginalis ATCC 49540]
Length = 220
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
GA++ SLI +GQ+WRL T FLH IAHL++N +L +G +E++ R L +Y SA
Sbjct: 42 GARVTSLIHEGQWWRLITPVFLHIGIAHLIINSITLYFLGMYIEELFSHWRMLVIYLVSA 101
Query: 219 IASS-AMSYRFCNSPAVGASGAIFGLVGSF 247
+ A +Y N+ + GAS A+FGL G+F
Sbjct: 102 FTGNLASAYFLPNTISAGASTALFGLFGAF 131
>gi|89099189|ref|ZP_01172067.1| hypothetical protein B14911_07900 [Bacillus sp. NRRL B-14911]
gi|89086035|gb|EAR65158.1| hypothetical protein B14911_07900 [Bacillus sp. NRRL B-14911]
Length = 522
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 57/96 (59%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GAK N LI +G++WR T LH + HL++N +L +G +E+I G R+L +Y
Sbjct: 217 LIEYGAKYNPLILEGEWWRFFTPIVLHIGLLHLIMNTLALYYLGTAVERIYGSTRFLFIY 276
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
+ + S+ F +S + GASGAIFG G+ F
Sbjct: 277 ILAGFMGALASFLFNSSVSAGASGAIFGCFGALLYF 312
>gi|385989630|ref|YP_005907928.1| integral membrane protein [Mycobacterium tuberculosis CCDC5180]
gi|385993221|ref|YP_005911519.1| integral membrane protein [Mycobacterium tuberculosis CCDC5079]
gi|424945902|ref|ZP_18361598.1| integral membrane protein [Mycobacterium tuberculosis NCGM2209]
gi|449062098|ref|YP_007429181.1| integral membrane protein [Mycobacterium bovis BCG str. Korea
1168P]
gi|339293175|gb|AEJ45286.1| integral membrane protein [Mycobacterium tuberculosis CCDC5079]
gi|339296823|gb|AEJ48933.1| integral membrane protein [Mycobacterium tuberculosis CCDC5180]
gi|358230417|dbj|GAA43909.1| integral membrane protein [Mycobacterium tuberculosis NCGM2209]
gi|379026212|dbj|BAL63945.1| integral membrane protein [Mycobacterium tuberculosis str. Erdman =
ATCC 35801]
gi|449030606|gb|AGE66033.1| integral membrane protein [Mycobacterium bovis BCG str. Korea
1168P]
Length = 212
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 70/127 (55%), Gaps = 11/127 (8%)
Query: 134 TNILLAVNVLVYIAQFAT---QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+++N LV++ Q + +L LW + S GQ +RL TSAFLH HL++N
Sbjct: 3 TYTLISLNALVFVMQVTVMGLERQLALWPPAVAS----GQTYRLVTSAFLHYGAMHLLLN 58
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFA 248
++L +GP +E G R+ +Y SA+ S + Y N+ GASGA+FGL G A
Sbjct: 59 MWALYVVGPPLEMWLGRLRFGALYAVSALGGSVLVYLIAPLNTATAGASGAVFGLFG--A 116
Query: 249 VFIMRHR 255
F++ R
Sbjct: 117 TFMVARR 123
>gi|392418856|ref|YP_006455461.1| putative membrane protein [Mycobacterium chubuense NBB4]
gi|390618632|gb|AFM19782.1| putative membrane protein [Mycobacterium chubuense NBB4]
Length = 285
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 20/167 (11%)
Query: 134 TNILLAVNVLVYIAQFATQD---KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+ +NVL+++ Q + D L+LW + G +RL T+AFLH H++ N
Sbjct: 75 TYALIGLNVLMFVLQSLSPDVERALVLWPPAVAG----GDLYRLLTAAFLHYGFTHILFN 130
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFA 248
++L +G +E G RY +Y SA+ S ++Y NS GASGA+FGL G+
Sbjct: 131 MWALYVVGAPLEAALGRLRYGALYLLSALGGSVLAYLLSPLNSATAGASGAVFGLFGALF 190
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANIVKIESRHTLT 295
V + R N+ +++ + +I+ N+ AF I+ + S ++
Sbjct: 191 V-VGRKLNM------DVRGVVVIIVLNL----AFTFIIPLVSSQNIS 226
>gi|134096653|ref|YP_001102314.1| rhomboid-like protein [Saccharopolyspora erythraea NRRL 2338]
gi|133909276|emb|CAL99388.1| rhomboid-like protein [Saccharopolyspora erythraea NRRL 2338]
Length = 259
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 69/137 (50%), Gaps = 24/137 (17%)
Query: 136 ILLAVNVLVYIAQ---------------FATQDKLLLWGAKINSLIDKGQFWRLATSAFL 180
+L+AVNVLV++ FAT A + L+ GQ+WRL TS FL
Sbjct: 36 VLIAVNVLVHVYTSVQAGSGMDNFDSDGFATS-------ALLPILVAGGQWWRLVTSGFL 88
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN--SPAVGASG 238
H + HL +N +L IG +E + G R+ VYF S + S + F P GASG
Sbjct: 89 HIGLPHLAMNMIALWVIGRDLELVLGRLRFTAVYFLSLLGGSTAVFVFGELVQPVAGASG 148
Query: 239 AIFGLVGSFAVFIMRHR 255
A++GL+G AV +R +
Sbjct: 149 AVYGLMGGIAVAALRLK 165
>gi|160874113|ref|YP_001553429.1| rhomboid family protein [Shewanella baltica OS195]
gi|378707356|ref|YP_005272250.1| rhomboid family protein [Shewanella baltica OS678]
gi|418024255|ref|ZP_12663238.1| Peptidase S54, rhomboid domain protein [Shewanella baltica OS625]
gi|160859635|gb|ABX48169.1| Rhomboid family protein [Shewanella baltica OS195]
gi|315266345|gb|ADT93198.1| Rhomboid family protein [Shewanella baltica OS678]
gi|353536215|gb|EHC05774.1| Peptidase S54, rhomboid domain protein [Shewanella baltica OS625]
Length = 541
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 69/126 (54%), Gaps = 9/126 (7%)
Query: 134 TNILLAVNVLVYIAQ-FATQ-------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ NVLV+I +++Q LL WGA + G++WRL TS F+H +A
Sbjct: 330 TPILMYFNVLVFILMAWSSQHFINLQGSFLLEWGANFRPKVLAGEWWRLITSTFIHGGLA 389
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLV 244
HL +N Y L +G +E + G R Y + I +S S + ++ +VGASGAI GL+
Sbjct: 390 HLALNLYGLFFVGSFLEPVLGKWRLFLAYLITGILASIASICWYDATVSVGASGAIMGLL 449
Query: 245 GSFAVF 250
G ++
Sbjct: 450 GILVIW 455
>gi|407718091|ref|YP_006795496.1| small hydrophobic molecule transporter protein [Leuconostoc
carnosum JB16]
gi|407241847|gb|AFT81497.1| small hydrophobic molecule transporter protein [Leuconostoc
carnosum JB16]
Length = 229
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 137 LLAVNVLVYIA-------QFATQDKLLLWGAKINSLID-KGQFWRLATSAFLHANIAHLM 188
+LAV +LV+IA Q A + L+ +GAK I Q+WRL T FLHA H+
Sbjct: 18 ILAVTILVFIAEGLFSGGQTANGEFLVSFGAKWGPYIHHYDQYWRLLTPVFLHAGFMHIA 77
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLVGSF 247
N +L IGP E+ G ++LG+YF I + MSY F + +VGAS A+F + G
Sbjct: 78 TNMLTLWFIGPLAEEAFGRWKFLGLYFFGGIFGNIMSYLFAPLTISVGASTALFAMFGGL 137
Query: 248 AVFIMRHRN 256
++ ++ +
Sbjct: 138 ILYAVQFKE 146
>gi|373464451|ref|ZP_09555990.1| peptidase, S54 family [Lactobacillus kisonensis F0435]
gi|371762653|gb|EHO51182.1| peptidase, S54 family [Lactobacillus kisonensis F0435]
Length = 220
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 137 LLAVNVLVYI---AQFATQD--KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
LLA+ V+V++ T D L+ +GAK N I G++WRL T F+H H+++N
Sbjct: 14 LLAIMVIVFLTMTVMGGTTDPGTLVRFGAKYNPAIRAGEYWRLITPMFIHIGFTHILMNG 73
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
+L IG +E++ G R+L ++ S I + S+ F GAS AIFGL G+F
Sbjct: 74 ITLYFIGEYVEQLFGHWRFLTIFLVSGIVGNLASFVFSYGLTAGASTAIFGLFGAF 129
>gi|117921729|ref|YP_870921.1| rhomboid family protein [Shewanella sp. ANA-3]
gi|117614061|gb|ABK49515.1| Rhomboid family protein [Shewanella sp. ANA-3]
Length = 525
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 67/127 (52%), Gaps = 9/127 (7%)
Query: 134 TNILLAVNVLVYIAQ-FATQ-------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T ILL +N L+++ F +Q LL WGA + L+ + Q WRL ++ FLH +
Sbjct: 333 TPILLYINTLIFVLMAFVSQHVIALPNSVLLDWGANLRQLVLEQQVWRLISNVFLHGGLM 392
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLV 244
HL+ N Y L G +E + G R L VY + +S S + + ++GASGAI GL
Sbjct: 393 HLVFNLYGLFFAGMFLEPLLGKWRLLWVYLCCGLVASMASIGWYEATISIGASGAIMGLF 452
Query: 245 GSFAVFI 251
G ++I
Sbjct: 453 GVLIIWI 459
>gi|418621400|ref|ZP_13184176.1| peptidase, S54 family [Staphylococcus epidermidis VCU123]
gi|374829344|gb|EHR93148.1| peptidase, S54 family [Staphylococcus epidermidis VCU123]
Length = 394
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 85/152 (55%), Gaps = 5/152 (3%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFS-DVKLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F + +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
+N K+ + L ++ +V S +NI
Sbjct: 286 SKNF---NKKMIGQLLIALVVLIVFSLFMSNI 314
>gi|242373854|ref|ZP_04819428.1| S54 family peptidase [Staphylococcus epidermidis M23864:W1]
gi|242348408|gb|EES40010.1| S54 family peptidase [Staphylococcus epidermidis M23864:W1]
Length = 303
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 73/117 (62%), Gaps = 3/117 (2%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
N+++ + +++Y+ +F+ KLL G ++ + G+++RL TS FLH N H+++N SL
Sbjct: 167 NVVIWLCMILYLNRFSDV-KLLDVGGLVHFNVVHGEWYRLITSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGS-FAV 249
G +E I G R L +YF S + + +S F S +VGASGAIFGL+G+ FA+
Sbjct: 226 FIFGKIVESIVGSWRMLIIYFISGLFGNFVSLSFNTSTISVGASGAIFGLIGAIFAI 282
>gi|373950714|ref|ZP_09610675.1| Rhomboid family protein [Shewanella baltica OS183]
gi|386323452|ref|YP_006019569.1| rhomboid family protein [Shewanella baltica BA175]
gi|333817597|gb|AEG10263.1| Rhomboid family protein [Shewanella baltica BA175]
gi|373887314|gb|EHQ16206.1| Rhomboid family protein [Shewanella baltica OS183]
Length = 538
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 70/126 (55%), Gaps = 9/126 (7%)
Query: 134 TNILLAVNVLVYIAQ-FATQ-------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +NVLV+I +++Q +L WGA + G++WRL TS F+H +A
Sbjct: 330 TPILMYLNVLVFILMAWSSQHFINLQGSFMLEWGANFRPKVLAGEWWRLITSTFIHGGLA 389
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLV 244
HL +N Y L +G +E + G R Y + I +S S + ++ +VGASGAI GL+
Sbjct: 390 HLALNLYGLFFVGSFLEPVLGKWRLFLAYLITGILASIASICWYDATVSVGASGAIMGLL 449
Query: 245 GSFAVF 250
G ++
Sbjct: 450 GILVIW 455
>gi|359460821|ref|ZP_09249384.1| rhomboid family protein [Acaryochloris sp. CCMEE 5410]
Length = 537
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 55/101 (54%), Gaps = 6/101 (5%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
GA I S + G +WRL +AFLH I HL +N + L +GP +EK+ G R+L Y +A
Sbjct: 367 GALIPSEVVAGDWWRLLAAAFLHFGIQHLSLNMFGLALLGPFVEKMLGTWRFLVSYLMTA 426
Query: 219 IASSAMSYR------FCNSPAVGASGAIFGLVGSFAVFIMR 253
I S F AVGASGAI GL+G+ A +R
Sbjct: 427 IGSMLTLTLLTITGIFVTPAAVGASGAIMGLIGTEAAIQLR 467
>gi|402298151|ref|ZP_10817865.1| hypothetical protein BalcAV_04560 [Bacillus alcalophilus ATCC
27647]
gi|401726654|gb|EJS99873.1| hypothetical protein BalcAV_04560 [Bacillus alcalophilus ATCC
27647]
Length = 249
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 81/156 (51%), Gaps = 7/156 (4%)
Query: 135 NILLAVNVLVY--IAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
IL+A++VL++ I + + G +N + G +WRL T F+H H++ N
Sbjct: 19 TILVAIHVLIFFWINLLPGGEWIYYHGVGLNLAVHNGDYWRLVTPIFMHVGFMHVIFNSV 78
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA---VGASGAIFGLVGSFAV 249
SL GP +E++ G R++ +Y SS I ++ +Y +GASGAIFGL G++
Sbjct: 79 SLILFGPPLEQMLGKFRFILLYLSSGIIANIATYYVGGLDYYAHLGASGAIFGLFGAYFY 138
Query: 250 FIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
++ ++++ + Q + +++ +V + NI
Sbjct: 139 IVLNRKDLI--DQTSSQMIMTILVIGLVMTFVNPNI 172
>gi|403727958|ref|ZP_10947871.1| rhomboid family protein [Gordonia rhizosphera NBRC 16068]
gi|403203710|dbj|GAB92202.1| rhomboid family protein [Gordonia rhizosphera NBRC 16068]
Length = 254
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 80/159 (50%), Gaps = 18/159 (11%)
Query: 137 LLAVNVLVYIA---QFATQDKL-----LLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
L+AVNV++++ Q D L + W A + G++WRL T+ FLH ++ H+
Sbjct: 33 LIAVNVVIFVICALQARGVDMLRSQLFVDW-ALYKPWVADGEYWRLLTAGFLHFSVTHIA 91
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA--MSYRFCNSPAVGASGAIFGLVGS 246
VN SL +G +E G RYLGVY ++ + SA M N GASGAI+GL+G+
Sbjct: 92 VNMLSLYILGRDLEIAIGIPRYLGVYLTALLGGSAAVMVLGADNGVNAGASGAIYGLMGA 151
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
V +++ R + +I+ N+V S I
Sbjct: 152 VLVVVIKAR-------ASPTPVITIIVLNLVLSVTIPGI 183
>gi|379795908|ref|YP_005325906.1| putative serine protease [Staphylococcus aureus subsp. aureus
MSHR1132]
gi|356872898|emb|CCE59237.1| putative serine protease [Staphylococcus aureus subsp. aureus
MSHR1132]
Length = 487
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 75/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIITSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R LG+YF + + + +S F + +VGASGAIFGL+G A+F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLGIYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIG--AIFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|326692732|ref|ZP_08229737.1| small hydrophobic molecule transporter protein, putative
[Leuconostoc argentinum KCTC 3773]
Length = 229
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 70/135 (51%), Gaps = 7/135 (5%)
Query: 137 LLAVNVLVYIAQFATQDKLLLWGAKINS--LIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
+ V V++ Q A L+ GAK ID Q+WRL T FLHA H++ N +L
Sbjct: 25 MFVVEVIMGHGQIANGQLLVTLGAKWGPGIAIDH-QYWRLLTPIFLHAGWLHIITNMLTL 83
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLVGSFAVFIMR 253
IGP E + G R++LG+Y + + MSY F + +VGAS A+FGL G +F +
Sbjct: 84 WFIGPLAEAVFGHRKFLGLYLFGGVVGNIMSYLFAPLTVSVGASTALFGLFGGLLMFASQ 143
Query: 254 HR---NILGGGKEEL 265
R IL GK L
Sbjct: 144 FRHDPEILAQGKTLL 158
>gi|224127432|ref|XP_002329276.1| predicted protein [Populus trichocarpa]
gi|222870730|gb|EEF07861.1| predicted protein [Populus trichocarpa]
Length = 492
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 74/131 (56%), Gaps = 9/131 (6%)
Query: 137 LLAVNVLVYI---------AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
L ++N+ V++ ++FA LL+GAKIN LI G++WRL T FLH+ H+
Sbjct: 253 LASINIAVFLFEIASPVRNSEFALFSLPLLYGAKINELILVGEWWRLVTPMFLHSGAFHV 312
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
++ +SL + GP + + G + +Y I+ + S+ P VG +G +F ++G++
Sbjct: 313 VLGSWSLLTFGPEVCRGYGSFTFFLIYVLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAW 372
Query: 248 AVFIMRHRNIL 258
++ ++++++
Sbjct: 373 LIYQNQNKDVI 383
>gi|441509684|ref|ZP_20991598.1| rhomboid family protein [Gordonia aichiensis NBRC 108223]
gi|441446200|dbj|GAC49559.1| rhomboid family protein [Gordonia aichiensis NBRC 108223]
Length = 230
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 73/131 (55%), Gaps = 9/131 (6%)
Query: 134 TNILLAVNVLVY---IAQFATQDK----LLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T L+AVNV+++ + Q + D L G + + + G++WRL T+ FLH +AH
Sbjct: 10 TYALIAVNVVIFALCVIQAKSFDAGLAPLFQHGDLVRADVANGEYWRLLTAGFLHFTVAH 69
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA--MSYRFCNSPAVGASGAIFGLV 244
+ +N SL +G +E G RYL VYF + SA M + N + GASGAI+GL+
Sbjct: 70 IALNMISLYILGRDLEAALGLGRYLMVYFVALFGGSAAVMLFEAGNVRSAGASGAIYGLM 129
Query: 245 GSFAVFIMRHR 255
G+ V +++ R
Sbjct: 130 GAVLVVVLKAR 140
>gi|147826430|emb|CAN66509.1| hypothetical protein VITISV_003619 [Vitis vinifera]
Length = 585
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 79/147 (53%), Gaps = 9/147 (6%)
Query: 135 NILLAVNVLVYIAQFATQDK---------LLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
+IL+++N+ V + + A+ + L++GAKIN LI G++WRL T FLH+ I
Sbjct: 245 SILVSINIAVVLFELASPIRNSDLELSSLPLMYGAKINDLILVGEWWRLVTPMFLHSGIF 304
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
H+ + C+ L + GP + + G + +Y I+ + S+ VG +G +F ++G
Sbjct: 305 HVALGCWVLLTFGPQVCRGYGSFTFFLIYILGGISGNLTSFLHTPDLTVGGTGPVFAIIG 364
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVI 272
++ + +++++++ E + +I
Sbjct: 365 AWVIHQIQNKDVIAKDVSESMYHKAII 391
>gi|91776194|ref|YP_545950.1| rhomboid-like protein [Methylobacillus flagellatus KT]
gi|91710181|gb|ABE50109.1| Rhomboid-like protein [Methylobacillus flagellatus KT]
Length = 356
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 12/137 (8%)
Query: 134 TNILLAVNVLVYIAQFATQDKL----------LLWGAKINSLIDKGQFWRLATSAFLHAN 183
T L+A N+LV++ L WGA G++WRL T+ FLH
Sbjct: 25 TKCLIAANLLVFVLMLFNGAGFWHSPNNVQLQLAWGANFGPATQDGEWWRLFTALFLHFG 84
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIF 241
HL +N + G +E++ G RYL +Y S + + +S + + AV GASGAIF
Sbjct: 85 AVHLALNMIAFWDGGQLVERMYGHWRYLVIYLVSGLVGNLLSLVWQGNQAVSGGASGAIF 144
Query: 242 GLVGSFAVFIMRHRNIL 258
G+ G+ VF+ + R +L
Sbjct: 145 GIYGALIVFLWQERALL 161
>gi|434384588|ref|YP_007095199.1| putative membrane protein [Chamaesiphon minutus PCC 6605]
gi|428015578|gb|AFY91672.1| putative membrane protein [Chamaesiphon minutus PCC 6605]
Length = 528
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 13/133 (9%)
Query: 134 TNILLAVNVLVYIAQFATQDKL-------LLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
TN ++A+NVL++ A+ Q K+ + WG L+ GQ+WR+ T+ FLH I H
Sbjct: 329 TNFIIAINVLIFCAELFWQSKIGDKDFTFIPWGGLSAPLVVGGQWWRIITANFLHMGILH 388
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA----MSYRFCNSP--AVGASGAI 240
L +N +L +G +E G +YL Y + + S A + ++ +P VGASGAI
Sbjct: 389 LGMNMLALLYLGKFVEYRLGTWKYLFAYLVAGLGSMAVITYIDLKWMTTPHITVGASGAI 448
Query: 241 FGLVGSFAVFIMR 253
G++G+ +R
Sbjct: 449 MGMLGAMGAIHLR 461
>gi|291005693|ref|ZP_06563666.1| rhomboid-like protein [Saccharopolyspora erythraea NRRL 2338]
Length = 308
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 69/137 (50%), Gaps = 24/137 (17%)
Query: 136 ILLAVNVLVYIAQ---------------FATQDKLLLWGAKINSLIDKGQFWRLATSAFL 180
+L+AVNVLV++ FAT A + L+ GQ+WRL TS FL
Sbjct: 85 VLIAVNVLVHVYTSVQAGSGMDNFDSDGFATS-------ALLPILVAGGQWWRLVTSGFL 137
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN--SPAVGASG 238
H + HL +N +L IG +E + G R+ VYF S + S + F P GASG
Sbjct: 138 HIGLPHLAMNMIALWVIGRDLELVLGRLRFTAVYFLSLLGGSTAVFVFGELVQPVAGASG 197
Query: 239 AIFGLVGSFAVFIMRHR 255
A++GL+G AV +R +
Sbjct: 198 AVYGLMGGIAVAALRLK 214
>gi|242061182|ref|XP_002451880.1| hypothetical protein SORBIDRAFT_04g009170 [Sorghum bicolor]
gi|241931711|gb|EES04856.1| hypothetical protein SORBIDRAFT_04g009170 [Sorghum bicolor]
Length = 328
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 96/194 (49%), Gaps = 16/194 (8%)
Query: 108 TRKNSGHEG-TSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDK---------LLL 157
R N+G + S LD + G TN+L A+N+ V + + A+ K LL
Sbjct: 137 VRGNTGIKSYQSLLDMHTDDQASGFYLTNLLAAINIAVLLFEIASPVKSSENEYLSLPLL 196
Query: 158 WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
+GAKIN+LI G++WRL T LH+ H+ + C++L GP + + G + +Y
Sbjct: 197 YGAKINNLILSGEWWRLLTPMCLHSGFLHIALGCWALLLFGPRVCRAYGQMTFFLIYILG 256
Query: 218 AIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMV 277
I + S+ V +G +F L+G++ V+ +++ ++ + +++ + + V
Sbjct: 257 GICGNLSSFVHTPEITVCGTGPVFSLIGAWLVYQSQNKQVID------KDVSESMFWQAV 310
Query: 278 CSAAFANIVKIESR 291
+AA + ++ I R
Sbjct: 311 IAAALSFLLSIFGR 324
>gi|111226097|ref|YP_716891.1| hypothetical protein FRAAL6764 [Frankia alni ACN14a]
gi|111153629|emb|CAJ65387.1| Hypothetical protein; putative membrane protein [Frankia alni
ACN14a]
Length = 252
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 23/167 (13%)
Query: 134 TNILLAVNVLVYIAQFAT-----------QDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
T IL+ + V+ YI Q A D + G +I + Q++RL T+AFLHA
Sbjct: 45 TQILIGLCVVAYILQGAPGLAGGDNSNRFTDDFAMIGFRIAA---DDQYYRLLTAAFLHA 101
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAI 240
+ H++ N Y+L +G +E I G RYLG++ + A+ + +SY ++ +VGAS AI
Sbjct: 102 GVLHILFNMYALYLLGFQLEAILGRARYLGLFVAGAVGGNTLSYLLGGLSTASVGASTAI 161
Query: 241 FGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANIVK 287
F ++ V R R + + + V+ N++ + +F+NI K
Sbjct: 162 FAFFAAYYVIARRLR-------VDSRQILVVLGINLLITFSFSNIDK 201
>gi|411003693|ref|ZP_11380022.1| hypothetical protein SgloC_12861 [Streptomyces globisporus C-1027]
Length = 301
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 71/136 (52%), Gaps = 13/136 (9%)
Query: 131 RQWTNILLAVNV----LVYIAQFATQDKLLLWGAKINSL-------IDKGQFWRLATSAF 179
R T ILL +N+ LV + D LL A S + +GQ++RL TS F
Sbjct: 86 RLVTKILLGINLAVFLLVTVRPGLVGDLTLLGRAWDPSPPPGSVEGVAEGQWYRLVTSMF 145
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGAS 237
LH + HL N L +G +E G RYL +Y S +A SA++Y N P++GAS
Sbjct: 146 LHQEVVHLGFNMLGLWWLGGQLEAALGRSRYLALYLLSGLAGSALTYLLAAQNQPSLGAS 205
Query: 238 GAIFGLVGSFAVFIMR 253
GA++GL G+ AV + R
Sbjct: 206 GAVYGLFGATAVLMRR 221
>gi|418411961|ref|ZP_12985227.1| hypothetical protein HMPREF9281_00831 [Staphylococcus epidermidis
BVS058A4]
gi|410891544|gb|EKS39341.1| hypothetical protein HMPREF9281_00831 [Staphylococcus epidermidis
BVS058A4]
Length = 486
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 85/152 (55%), Gaps = 5/152 (3%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F + +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
+N K+ + L ++ +V S +NI
Sbjct: 286 SKNF---NKKMIGQLLIALVVLIVFSLFMSNI 314
>gi|420163079|ref|ZP_14669826.1| rhomboid family protein [Staphylococcus epidermidis NIHLM095]
gi|420167946|ref|ZP_14674598.1| rhomboid family protein [Staphylococcus epidermidis NIHLM087]
gi|394234768|gb|EJD80342.1| rhomboid family protein [Staphylococcus epidermidis NIHLM095]
gi|394237974|gb|EJD83460.1| rhomboid family protein [Staphylococcus epidermidis NIHLM087]
Length = 486
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 85/152 (55%), Gaps = 5/152 (3%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F + +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
+N K+ + L ++ +V S +NI
Sbjct: 286 SKNF---NKKMIGQLLIALVVLIVFSLFMSNI 314
>gi|154249662|ref|YP_001410487.1| rhomboid family protein [Fervidobacterium nodosum Rt17-B1]
gi|154153598|gb|ABS60830.1| Rhomboid family protein [Fervidobacterium nodosum Rt17-B1]
Length = 224
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 156 LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
LL+GA+ LI GQ++R+ T+ F+H HL N Y+L IG E I G R++ YF
Sbjct: 38 LLFGAQYGPLIKSGQWYRIITAMFMHGGFLHLAFNMYALYIIGNYAEGIYGTYRFITYYF 97
Query: 216 SSAIASSAMSYRF-CNSPAVGASGAIFGLVG 245
+ I + ++ F S +VGASGAIFGLVG
Sbjct: 98 ITGIVGNVATHIFYYGSLSVGASGAIFGLVG 128
>gi|418606637|ref|ZP_13169907.1| peptidase, S54 family [Staphylococcus epidermidis VCU057]
gi|374407413|gb|EHQ78275.1| peptidase, S54 family [Staphylococcus epidermidis VCU057]
Length = 477
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 85/152 (55%), Gaps = 5/152 (3%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F + +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
+N K+ + L ++ +V S +NI
Sbjct: 286 SKNF---NKKMIGQLLIALVVLIVFSLFMSNI 314
>gi|374323241|ref|YP_005076370.1| rhomboid family protein [Paenibacillus terrae HPL-003]
gi|357202250|gb|AET60147.1| rhomboid family protein [Paenibacillus terrae HPL-003]
Length = 207
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 84/162 (51%), Gaps = 12/162 (7%)
Query: 134 TNILLAVNVLVYIA---QFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T ++L +N++++I +++ L L +GA IN Q WR ++ FLHA HL
Sbjct: 19 TCLILLINIVMFIVLTVHGGSENSLTLIRYGALINEEPFTAQLWRYVSAMFLHAGFDHLF 78
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA-----VGASGAIFGL 243
N +++ P +E++ G RY +Y ++ I + MS N A VGASGAI+G+
Sbjct: 79 FNSFAILVFAPPLERLLGSFRYALLYLATGIVGNVMSIAHYNMAAETTVSVGASGAIYGI 138
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
G+F + R ++ + + L ++ F ++ S A ANI
Sbjct: 139 YGAFLYVALFQRTLM--DEASRKTLYTLLGFGILFSFAVANI 178
>gi|420187246|ref|ZP_14693267.1| rhomboid family protein [Staphylococcus epidermidis NIHLM039]
gi|394256225|gb|EJE01158.1| rhomboid family protein [Staphylococcus epidermidis NIHLM039]
Length = 486
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 85/152 (55%), Gaps = 5/152 (3%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F + +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
+N K+ + L ++ +V S +NI
Sbjct: 286 SKNF---NKKMIGQLLIALVVLIVFSLFMSNI 314
>gi|420172602|ref|ZP_14679101.1| rhomboid family protein [Staphylococcus epidermidis NIHLM067]
gi|394241763|gb|EJD87172.1| rhomboid family protein [Staphylococcus epidermidis NIHLM067]
Length = 486
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 85/152 (55%), Gaps = 5/152 (3%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F + +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
+N K+ + L ++ +V S +NI
Sbjct: 286 SKNF---NKKMIGQLLIALVVLIVFSLFMSNI 314
>gi|152999493|ref|YP_001365174.1| rhomboid family protein [Shewanella baltica OS185]
gi|151364111|gb|ABS07111.1| Rhomboid family protein [Shewanella baltica OS185]
Length = 547
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 70/126 (55%), Gaps = 9/126 (7%)
Query: 134 TNILLAVNVLVYIAQ-FATQ-------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +NVLV+I +++Q +L WGA + G++WRL TS F+H +A
Sbjct: 330 TPILMYLNVLVFILMAWSSQHFINLQGSFMLEWGANFRPKVLAGEWWRLITSTFIHGGLA 389
Query: 186 HLMVNCYSLNSIGPTMEKICGP-RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
HL +N Y L +G +E + G R +L + +AS A + + +VGASGAI GL+
Sbjct: 390 HLALNLYGLFFVGSFLEPVLGKWRLFLAYLITGVLASIASICWYDATVSVGASGAIMGLL 449
Query: 245 GSFAVF 250
G ++
Sbjct: 450 GILVIW 455
>gi|308172329|ref|YP_003919034.1| hypothetical protein BAMF_0438 [Bacillus amyloliquefaciens DSM 7]
gi|384158053|ref|YP_005540126.1| hypothetical protein BAMTA208_02230 [Bacillus amyloliquefaciens
TA208]
gi|384162858|ref|YP_005544237.1| hypothetical protein LL3_00461 [Bacillus amyloliquefaciens LL3]
gi|384167079|ref|YP_005548457.1| hypothetical protein BAXH7_00463 [Bacillus amyloliquefaciens XH7]
gi|307605193|emb|CBI41564.1| conserved hypothetical protein [Bacillus amyloliquefaciens DSM 7]
gi|328552141|gb|AEB22633.1| hypothetical protein BAMTA208_02230 [Bacillus amyloliquefaciens
TA208]
gi|328910413|gb|AEB62009.1| hypothetical protein LL3_00461 [Bacillus amyloliquefaciens LL3]
gi|341826358|gb|AEK87609.1| hypothetical protein BAXH7_00463 [Bacillus amyloliquefaciens XH7]
Length = 199
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 5/123 (4%)
Query: 155 LLLWGAKI---NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
+++W + N + +G++WRL T FLHAN HL+ N SL P +E++ G R+L
Sbjct: 39 VMMWSDAVTGYNYGVAEGEWWRLVTPMFLHANFTHLLFNSMSLFLFAPPLEQMLGKVRFL 98
Query: 212 GVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLA 269
VY +S I + +Y + VGASGAIFGL G + + + ++G + ++
Sbjct: 99 IVYIASGIIGNIGTYLVEPLDYVHVGASGAIFGLFGVYVFLTVFRKELIGRDQSKMIMTL 158
Query: 270 KVI 272
VI
Sbjct: 159 LVI 161
>gi|126175582|ref|YP_001051731.1| rhomboid family protein [Shewanella baltica OS155]
gi|386342329|ref|YP_006038695.1| rhomboid family protein [Shewanella baltica OS117]
gi|125998787|gb|ABN62862.1| Rhomboid family protein [Shewanella baltica OS155]
gi|334864730|gb|AEH15201.1| Rhomboid family protein [Shewanella baltica OS117]
Length = 541
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 70/126 (55%), Gaps = 9/126 (7%)
Query: 134 TNILLAVNVLVYIAQ-FATQ-------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +NVLV+I +++Q +L WGA + G++WRL TS F+H +A
Sbjct: 330 TPILMYLNVLVFILMAWSSQHFINFQGSFMLEWGANFRPKVLAGEWWRLITSTFIHGGLA 389
Query: 186 HLMVNCYSLNSIGPTMEKICGP-RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
HL +N Y L +G +E + G R +L + +AS A + + +VGASGAI GL+
Sbjct: 390 HLALNLYGLFFVGSFLEPVLGKWRLFLAYLITGVLASIASICWYDATVSVGASGAIMGLL 449
Query: 245 GSFAVF 250
G ++
Sbjct: 450 GILVIW 455
>gi|420211212|ref|ZP_14716586.1| rhomboid family protein [Staphylococcus epidermidis NIHLM001]
gi|394281665|gb|EJE25891.1| rhomboid family protein [Staphylococcus epidermidis NIHLM001]
Length = 486
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 85/152 (55%), Gaps = 5/152 (3%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F + +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
+N K+ + L ++ +V S +NI
Sbjct: 286 SKNF---NKKMIGQLLIALVVLIVFSLFMSNI 314
>gi|413925970|gb|AFW65902.1| hypothetical protein ZEAMMB73_057038 [Zea mays]
Length = 503
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 92/186 (49%), Gaps = 15/186 (8%)
Query: 115 EGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDK---------LLLWGAKINSL 165
+ S LD + G TN+L VN+ V + + A+ K LL+GAKIN+L
Sbjct: 246 DEKSLLDMHTDDQASGFCLTNLLAGVNIAVLLFEIASPVKNSENEYLSLPLLYGAKINNL 305
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
I G++WRL T LH+ H+ + C++L GP + + G R + +Y I + S
Sbjct: 306 ILSGEWWRLLTPMCLHSGFLHIALGCWALLIFGPRVCRAYGQRTFFLIYILGGICGNLSS 365
Query: 226 YRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
+ V +G +F L+G++ V+ +++ ++ + +++ + + V +AA + +
Sbjct: 366 FVHTPEITVCGTGPVFSLIGAWLVYQGQNKQVID------KDVSESMFWQAVIAAALSFL 419
Query: 286 VKIESR 291
+ I R
Sbjct: 420 LSIFGR 425
>gi|333445938|ref|ZP_08480880.1| membrane-associated serine protease [Leuconostoc inhae KCTC 3774]
Length = 174
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC 229
Q+WRL T FLHA + H++ N +L IGP E+ G R++LG+Y I + MSY F
Sbjct: 4 QYWRLVTPLFLHAGVMHILTNMLTLWFIGPIAEETFGSRKFLGLYLFGGIVGNIMSYLFA 63
Query: 230 N-SPAVGASGAIFGLVGSFAVFIMRHRN 256
+ +VGAS A+FG+ G ++ ++ ++
Sbjct: 64 PLTVSVGASSALFGMFGGLILYAVQFKH 91
>gi|27468153|ref|NP_764790.1| hypothetical protein SE1235 [Staphylococcus epidermidis ATCC 12228]
gi|57867074|ref|YP_188690.1| rhomboid family protein [Staphylococcus epidermidis RP62A]
gi|251810965|ref|ZP_04825438.1| S54 family peptidase [Staphylococcus epidermidis BCM-HMP0060]
gi|282876025|ref|ZP_06284892.1| peptidase, S54 (rhomboid) family protein [Staphylococcus
epidermidis SK135]
gi|293366490|ref|ZP_06613167.1| rhomboid family protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|417646984|ref|ZP_12296833.1| peptidase, S54 family [Staphylococcus epidermidis VCU144]
gi|417656060|ref|ZP_12305751.1| peptidase, S54 family [Staphylococcus epidermidis VCU028]
gi|417659640|ref|ZP_12309240.1| peptidase, S54 family [Staphylococcus epidermidis VCU045]
gi|417908746|ref|ZP_12552503.1| peptidase, S54 family [Staphylococcus epidermidis VCU037]
gi|417912278|ref|ZP_12555973.1| peptidase, S54 family [Staphylococcus epidermidis VCU105]
gi|417913747|ref|ZP_12557410.1| peptidase, S54 family [Staphylococcus epidermidis VCU109]
gi|418609437|ref|ZP_13172589.1| peptidase, S54 family [Staphylococcus epidermidis VCU065]
gi|418612797|ref|ZP_13175821.1| peptidase, S54 family [Staphylococcus epidermidis VCU117]
gi|418616300|ref|ZP_13179225.1| peptidase, S54 family [Staphylococcus epidermidis VCU120]
gi|418625262|ref|ZP_13187915.1| peptidase, S54 family [Staphylococcus epidermidis VCU125]
gi|418626366|ref|ZP_13188978.1| peptidase, S54 family [Staphylococcus epidermidis VCU126]
gi|418629382|ref|ZP_13191890.1| peptidase, S54 family [Staphylococcus epidermidis VCU127]
gi|418665219|ref|ZP_13226669.1| peptidase, S54 family [Staphylococcus epidermidis VCU081]
gi|419771673|ref|ZP_14297719.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-K]
gi|420165544|ref|ZP_14672235.1| rhomboid family protein [Staphylococcus epidermidis NIHLM088]
gi|420170258|ref|ZP_14676819.1| rhomboid family protein [Staphylococcus epidermidis NIHLM070]
gi|420183211|ref|ZP_14689344.1| rhomboid family protein [Staphylococcus epidermidis NIHLM049]
gi|420194847|ref|ZP_14700644.1| rhomboid family protein [Staphylococcus epidermidis NIHLM021]
gi|420197429|ref|ZP_14703153.1| rhomboid family protein [Staphylococcus epidermidis NIHLM020]
gi|420201679|ref|ZP_14707289.1| rhomboid family protein [Staphylococcus epidermidis NIHLM018]
gi|420206132|ref|ZP_14711642.1| rhomboid family protein [Staphylococcus epidermidis NIHLM008]
gi|420209055|ref|ZP_14714493.1| rhomboid family protein [Staphylococcus epidermidis NIHLM003]
gi|420214009|ref|ZP_14719289.1| rhomboid family protein [Staphylococcus epidermidis NIH05005]
gi|420221664|ref|ZP_14726591.1| peptidase, S54 family [Staphylococcus epidermidis NIH08001]
gi|420225746|ref|ZP_14730573.1| peptidase, S54 family [Staphylococcus epidermidis NIH06004]
gi|420227336|ref|ZP_14732107.1| peptidase, S54 family [Staphylococcus epidermidis NIH05003]
gi|420229653|ref|ZP_14734358.1| peptidase, S54 family [Staphylococcus epidermidis NIH04003]
gi|420234711|ref|ZP_14739271.1| peptidase, S54 family [Staphylococcus epidermidis NIH051475]
gi|421606956|ref|ZP_16048207.1| rhomboid family protein [Staphylococcus epidermidis AU12-03]
gi|27315699|gb|AAO04834.1|AE016748_68 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|57637732|gb|AAW54520.1| rhomboid family protein [Staphylococcus epidermidis RP62A]
gi|251805475|gb|EES58132.1| S54 family peptidase [Staphylococcus epidermidis BCM-HMP0060]
gi|281295050|gb|EFA87577.1| peptidase, S54 (rhomboid) family protein [Staphylococcus
epidermidis SK135]
gi|291319259|gb|EFE59628.1| rhomboid family protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329725333|gb|EGG61816.1| peptidase, S54 family [Staphylococcus epidermidis VCU144]
gi|329735277|gb|EGG71569.1| peptidase, S54 family [Staphylococcus epidermidis VCU045]
gi|329737310|gb|EGG73564.1| peptidase, S54 family [Staphylococcus epidermidis VCU028]
gi|341651289|gb|EGS75094.1| peptidase, S54 family [Staphylococcus epidermidis VCU105]
gi|341654769|gb|EGS78507.1| peptidase, S54 family [Staphylococcus epidermidis VCU109]
gi|341656107|gb|EGS79830.1| peptidase, S54 family [Staphylococcus epidermidis VCU037]
gi|374407651|gb|EHQ78503.1| peptidase, S54 family [Staphylococcus epidermidis VCU065]
gi|374409194|gb|EHQ79994.1| peptidase, S54 family [Staphylococcus epidermidis VCU081]
gi|374817874|gb|EHR82049.1| peptidase, S54 family [Staphylococcus epidermidis VCU117]
gi|374821126|gb|EHR85193.1| peptidase, S54 family [Staphylococcus epidermidis VCU120]
gi|374825404|gb|EHR89340.1| peptidase, S54 family [Staphylococcus epidermidis VCU125]
gi|374832800|gb|EHR96505.1| peptidase, S54 family [Staphylococcus epidermidis VCU126]
gi|374834085|gb|EHR97745.1| peptidase, S54 family [Staphylococcus epidermidis VCU127]
gi|383360492|gb|EID37887.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-K]
gi|394235345|gb|EJD80917.1| rhomboid family protein [Staphylococcus epidermidis NIHLM088]
gi|394240596|gb|EJD86019.1| rhomboid family protein [Staphylococcus epidermidis NIHLM070]
gi|394249674|gb|EJD94887.1| rhomboid family protein [Staphylococcus epidermidis NIHLM049]
gi|394263907|gb|EJE08628.1| rhomboid family protein [Staphylococcus epidermidis NIHLM021]
gi|394266236|gb|EJE10882.1| rhomboid family protein [Staphylococcus epidermidis NIHLM020]
gi|394271947|gb|EJE16426.1| rhomboid family protein [Staphylococcus epidermidis NIHLM018]
gi|394277971|gb|EJE22288.1| rhomboid family protein [Staphylococcus epidermidis NIHLM008]
gi|394279283|gb|EJE23591.1| rhomboid family protein [Staphylococcus epidermidis NIHLM003]
gi|394283931|gb|EJE28092.1| rhomboid family protein [Staphylococcus epidermidis NIH05005]
gi|394290290|gb|EJE34154.1| peptidase, S54 family [Staphylococcus epidermidis NIH08001]
gi|394293180|gb|EJE36903.1| peptidase, S54 family [Staphylococcus epidermidis NIH06004]
gi|394297267|gb|EJE40870.1| peptidase, S54 family [Staphylococcus epidermidis NIH05003]
gi|394298947|gb|EJE42502.1| peptidase, S54 family [Staphylococcus epidermidis NIH04003]
gi|394303954|gb|EJE47364.1| peptidase, S54 family [Staphylococcus epidermidis NIH051475]
gi|406657425|gb|EKC83813.1| rhomboid family protein [Staphylococcus epidermidis AU12-03]
Length = 486
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 85/152 (55%), Gaps = 5/152 (3%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F + +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
+N K+ + L ++ +V S +NI
Sbjct: 286 SKNF---NKKMIGQLLIALVVLIVFSLFMSNI 314
>gi|420199483|ref|ZP_14705161.1| rhomboid family protein [Staphylococcus epidermidis NIHLM031]
gi|394272265|gb|EJE16734.1| rhomboid family protein [Staphylococcus epidermidis NIHLM031]
Length = 486
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F S +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTSTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRN 256
+N
Sbjct: 286 SKN 288
>gi|366164287|ref|ZP_09464042.1| rhomboid family protein [Acetivibrio cellulolyticus CD2]
Length = 519
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 59/112 (52%)
Query: 136 ILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLN 195
I L +N+ I + + +GAK N I G++WR T FLHA++ HL N SL
Sbjct: 192 IWLVMNIYARIKNIDVSNLFIPFGAKENFSIMSGEYWRFITPIFLHADLEHLFANSLSLF 251
Query: 196 SIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
G +E + G +++ +Y ++ + + S+ F VGASG+IFG G+
Sbjct: 252 VFGRIVEGMYGHKKFTFIYLAAGVIGNVASFMFSTYSGVGASGSIFGFFGAL 303
>gi|449483332|ref|XP_004156558.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101206746
[Cucumis sativus]
Length = 479
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 86/164 (52%), Gaps = 12/164 (7%)
Query: 137 LLAVNVLVYIAQFATQDK---------LLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
L+++N+ V++ + A+ K L+GAKIN LI G++WRL T FLH+ + H+
Sbjct: 232 LVSINIAVFLFEVASPVKNSELQLFSLPSLYGAKINELILVGEWWRLVTPMFLHSGVLHV 291
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGA-SGAIFGLVGS 246
++C++L + G + + GP + +Y ++ + S+ P VG G +F ++G+
Sbjct: 292 ALSCWTLLTFGRQVCRXYGPFTFFLIYVLGGVSGNLTSFLHTPDPTVGGRXGPVFAMIGA 351
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANIVKIES 290
+ + ++++++ + L ++ V S+ +NI I+
Sbjct: 352 WLSYQFQNKDVMTKDVSDKMFLKALV--AAVISSILSNIGPIDE 393
>gi|421836033|ref|ZP_16270628.1| peptidase, S54, partial [Clostridium botulinum CFSAN001627]
gi|409742181|gb|EKN41685.1| peptidase, S54, partial [Clostridium botulinum CFSAN001627]
Length = 266
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 149 FATQDKLLLW-GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
F + K+L++ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LN+IGP +E G
Sbjct: 179 FTSDIKVLIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGK 238
Query: 208 RRYLGVYFSSAI 219
+YL +YF S I
Sbjct: 239 VKYLIIYFISGI 250
>gi|418614697|ref|ZP_13177659.1| peptidase, S54 family [Staphylococcus epidermidis VCU118]
gi|374819233|gb|EHR83361.1| peptidase, S54 family [Staphylococcus epidermidis VCU118]
Length = 486
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F S +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTSTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRN 256
+N
Sbjct: 286 SKN 288
>gi|416125288|ref|ZP_11595886.1| rhomboid family protein [Staphylococcus epidermidis FRI909]
gi|420178246|ref|ZP_14684579.1| rhomboid family protein [Staphylococcus epidermidis NIHLM057]
gi|420180055|ref|ZP_14686315.1| rhomboid family protein [Staphylococcus epidermidis NIHLM053]
gi|319400885|gb|EFV89104.1| rhomboid family protein [Staphylococcus epidermidis FRI909]
gi|394246872|gb|EJD92124.1| rhomboid family protein [Staphylococcus epidermidis NIHLM057]
gi|394251487|gb|EJD96572.1| rhomboid family protein [Staphylococcus epidermidis NIHLM053]
Length = 486
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F S +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTSTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRN 256
+N
Sbjct: 286 SKN 288
>gi|451348178|ref|YP_007446809.1| rhomboid protease [Bacillus amyloliquefaciens IT-45]
gi|449851936|gb|AGF28928.1| rhomboid protease [Bacillus amyloliquefaciens IT-45]
Length = 199
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 5/134 (3%)
Query: 137 LLAVNVLVYIAQFATQDKLLLWGAKI---NSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
+LA+ +++ +++W + N+ + G++WRL T FLHAN HL+ N S
Sbjct: 21 ILALQAFLWLFFSMPLHSVMMWSDAVTGYNNGVSSGEWWRLVTPMFLHANFTHLLFNSMS 80
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSY--RFCNSPAVGASGAIFGLVGSFAVFI 251
L P +E++ G R+L VY +S I + +Y + VGASGAIFGL G +
Sbjct: 81 LFLFAPPLEQMLGKVRFLIVYIASGIIGNIGTYLAEPLDYVHVGASGAIFGLFGVYVFLT 140
Query: 252 MRHRNILGGGKEEL 265
+ + ++G + ++
Sbjct: 141 VFRKELIGRDQSKM 154
>gi|326803846|ref|YP_004321664.1| S8/S53 family peptidase [Aerococcus urinae ACS-120-V-Col10a]
gi|326650087|gb|AEA00270.1| peptidase, S54 family [Aerococcus urinae ACS-120-V-Col10a]
Length = 221
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 75/130 (57%), Gaps = 10/130 (7%)
Query: 134 TNILLAVNVLVYIAQ-----FATQDKLLLWGAKINSLID-KGQFWRLATSAFLHANIAHL 187
T LLA+ +++Y+ + LLL+GAK N+LI GQ+WRL T F+H +HL
Sbjct: 8 TYTLLAIQIIIYLLMEFTGSSLSSSTLLLFGAKENALIAIYGQYWRLLTPIFVHIGFSHL 67
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
+ N +L +G +E I G R+L +Y S I + SY+F S + GAS A+FGL F
Sbjct: 68 LFNSITLWYLGSEVEGIIGSWRFLFIYLYSGIMGNLFSYQFSTSVSAGASTALFGL---F 124
Query: 248 AVFI-MRHRN 256
A F+ MR+ N
Sbjct: 125 AFFLAMRYLN 134
>gi|383636302|ref|ZP_09950708.1| hypothetical protein SchaN1_02019 [Streptomyces chartreusis NRRL
12338]
Length = 296
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 89/181 (49%), Gaps = 26/181 (14%)
Query: 116 GTSHLDTARTNLFIG--------RQWTNILLAVNVLVYIAQFATQ---DKLLLWGA---- 160
GT H TA I R T IL+ +N+ V+IA + + L+L GA
Sbjct: 60 GTGHAPTAAMPRTIAGGAVTADPRLLTKILIGINLAVFIAVQVHESLLNDLVLLGAWPPA 119
Query: 161 --KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
+ G+++RL TS F H I H+ N SL +G +E G RYL +Y S
Sbjct: 120 PFTPTQGVAGGEWYRLVTSMFTHQEIWHIAFNMLSLWWLGGPLEAALGRVRYLALYLVSG 179
Query: 219 IASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNM 276
+A S ++Y N+ +GASGAIFGL G+ AV +MR N +++ + +++ N+
Sbjct: 180 LAGSTLAYLLTSPNTATLGASGAIFGLFGATAV-LMRRLNY------DMRPIIALLVINL 232
Query: 277 V 277
+
Sbjct: 233 I 233
>gi|418633195|ref|ZP_13195612.1| peptidase, S54 family [Staphylococcus epidermidis VCU129]
gi|420190163|ref|ZP_14696107.1| rhomboid family protein [Staphylococcus epidermidis NIHLM037]
gi|420204465|ref|ZP_14710023.1| rhomboid family protein [Staphylococcus epidermidis NIHLM015]
gi|374840014|gb|EHS03521.1| peptidase, S54 family [Staphylococcus epidermidis VCU129]
gi|394259054|gb|EJE03924.1| rhomboid family protein [Staphylococcus epidermidis NIHLM037]
gi|394273475|gb|EJE17906.1| rhomboid family protein [Staphylococcus epidermidis NIHLM015]
Length = 486
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F S +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTSTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRN 256
+N
Sbjct: 286 SKN 288
>gi|401406518|ref|XP_003882708.1| Rhomboid family protein, related [Neospora caninum Liverpool]
gi|325117124|emb|CBZ52676.1| Rhomboid family protein, related [Neospora caninum Liverpool]
Length = 283
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 63/123 (51%), Gaps = 13/123 (10%)
Query: 136 ILLAVNVLVYIAQFA-----------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
I+ V V VYIA A T L ++GA I LI GQ WRL FLH N+
Sbjct: 64 IISLVQVAVYIASLALGLAPNEVLAPTPQTLAMFGANIPELIRIGQVWRLICPLFLHLNL 123
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSPAVGASGAIFG 242
H+++N + + +G TME+ G ++ L YF I ++ +S FC GAS A+F
Sbjct: 124 FHILMNLWVQSRVGLTMEEKYGSKKLLATYFGVGILANMISAAVLFCGQMKAGASTAVFA 183
Query: 243 LVG 245
L+G
Sbjct: 184 LIG 186
>gi|424780986|ref|ZP_18207852.1| GlpG membrane protein [Catellicoccus marimammalium M35/04/3]
gi|422842406|gb|EKU26858.1| GlpG membrane protein [Catellicoccus marimammalium M35/04/3]
Length = 200
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
LL +GA+ L+ +GQ+WRL T+ F+H AHL +N +L IGP +E G RYL +Y
Sbjct: 45 LLTFGAEWGPLVHQGQWWRLITAMFVHIGFAHLFLNLLTLYFIGPELEFYLGKIRYLLLY 104
Query: 215 FSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMRHRN--ILGGGKEELQHLAKV 271
I + +S F N+ + G S A+FGL G + V R + + G++ +A
Sbjct: 105 LLCGIGGNVVSLFFDGNAISAGCSTALFGLFGYYIVQAKRSSSPWMRELGRQYFVFIAMN 164
Query: 272 IIFNM 276
IIFN+
Sbjct: 165 IIFNL 169
>gi|157692984|ref|YP_001487446.1| peptidase [Bacillus pumilus SAFR-032]
gi|157681742|gb|ABV62886.1| S54 family peptidase [Bacillus pumilus SAFR-032]
Length = 512
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 76/130 (58%), Gaps = 5/130 (3%)
Query: 133 WTNILLAVNVLVYI-----AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T +L+AV V++++ L +GAK N LI +G++WRL T FLH + HL
Sbjct: 184 FTYLLIAVQVVMFLLLELFGGSTNTATLTAFGAKNNGLILEGEWWRLMTPMFLHIGLTHL 243
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
+ N ++L S+G +E+I G R+L +YF S I S S+ F + A GASGAIFG +G+
Sbjct: 244 LFNTFALWSVGAAVERIYGSWRFLLIYFISGIFGSIASFVFNTAIAAGASGAIFGCLGAL 303
Query: 248 AVFIMRHRNI 257
+ +R +
Sbjct: 304 LYLAISNRKL 313
>gi|418630551|ref|ZP_13193032.1| peptidase, S54 family [Staphylococcus epidermidis VCU128]
gi|374837741|gb|EHS01304.1| peptidase, S54 family [Staphylococcus epidermidis VCU128]
Length = 486
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F S +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTSTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRN 256
+N
Sbjct: 286 SKN 288
>gi|422866646|ref|ZP_16913264.1| peptidase, S54 family, partial [Enterococcus faecalis TX1467]
gi|329578206|gb|EGG59610.1| peptidase, S54 family [Enterococcus faecalis TX1467]
Length = 214
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 158 WGAKINSLIDKG-QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFS 216
WGA + L+ + ++WR FLH H+++N +L IG +E I G RYLG+Y
Sbjct: 26 WGAMVRPLVAQNHEYWRFINPMFLHIGFMHIILNMVTLYYIGAQVEAIYGHWRYLGIYLL 85
Query: 217 SAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAV 249
S IA + S+ F NS + GAS A+FGL G+F +
Sbjct: 86 SGIAGNIASFAFGTPNSVSAGASTALFGLFGAFVI 120
>gi|452974258|gb|EME74079.1| transmembrane protein YdcA [Bacillus sonorensis L12]
Length = 199
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 7/131 (5%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWG---AKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T +LA+ + +++ + +W N I +G++WRL T F+HA +HL+ N
Sbjct: 18 TAAILALQLAIWVLFLIPLPAVQMWSDLTIGFNWGIAEGEWWRLVTPVFIHAGFSHLLFN 77
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA---VGASGAIFGLVGSF 247
SL P +E++ G R+L VY S + + +Y F P VGASGAIFGL G +
Sbjct: 78 SMSLFLFAPALERMMGKLRFLAVYIGSGVIGNIGTY-FIEPPEYTHVGASGAIFGLFGVY 136
Query: 248 AVFIMRHRNIL 258
++ + ++
Sbjct: 137 LYMVLFRKGLM 147
>gi|239825780|ref|YP_002948404.1| rhomboid family protein [Geobacillus sp. WCH70]
gi|239806073|gb|ACS23138.1| Rhomboid family protein [Geobacillus sp. WCH70]
Length = 205
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 16/156 (10%)
Query: 134 TNILLAVNVLVYIAQFA-TQDKLLLWGAKI--NSLIDKGQFWRLATSAFLHANIAHLMVN 190
+IL+A++V+++ F LW I N+ + G++WRL + LH H+++N
Sbjct: 18 VSILVALHVVIWFTFFLRIPIAEPLWEKMIGFNAAVQNGEYWRLVSPLVLHVRFEHMIIN 77
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV----GASGAIFGLVGS 246
SL GP +EK+ G ++L +Y S I ++ + F PA+ GASGAIFGL G
Sbjct: 78 SISLILFGPALEKMLGKSKFLLLYIGSGICANIAT--FFVLPAMYSHAGASGAIFGLFGM 135
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAF 282
+ I+ R+I+ E QH ++F ++C + F
Sbjct: 136 YGYLIVFCRDII-----ETQH--ARLLFAVICISLF 164
>gi|297801768|ref|XP_002868768.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
gi|297314604|gb|EFH45027.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
Length = 399
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 63/109 (57%)
Query: 156 LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
LL+GAKIN LI GQ+WRL T FLH+ I H+ ++ ++L + GP + + G + +Y
Sbjct: 182 LLYGAKINDLILAGQWWRLVTPMFLHSGIPHVALSSWALLTFGPKVCRDYGLFTFCLIYI 241
Query: 216 SSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEE 264
++ + MS+ P VG +G F L+G++ V +++ ++ + E
Sbjct: 242 LGGVSGNFMSFLHTADPTVGGTGPAFALIGAWLVDQNQNKEMIKSNEYE 290
>gi|242242821|ref|ZP_04797266.1| rhomboid family protein [Staphylococcus epidermidis W23144]
gi|420174687|ref|ZP_14681135.1| rhomboid family protein [Staphylococcus epidermidis NIHLM061]
gi|420192300|ref|ZP_14698160.1| rhomboid family protein [Staphylococcus epidermidis NIHLM023]
gi|242233722|gb|EES36034.1| rhomboid family protein [Staphylococcus epidermidis W23144]
gi|394244591|gb|EJD89926.1| rhomboid family protein [Staphylococcus epidermidis NIHLM061]
gi|394261511|gb|EJE06308.1| rhomboid family protein [Staphylococcus epidermidis NIHLM023]
Length = 486
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F S +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTSTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRN 256
+N
Sbjct: 286 SKN 288
>gi|420216660|ref|ZP_14721861.1| rhomboid family protein, partial [Staphylococcus epidermidis
NIH05001]
gi|394291537|gb|EJE35341.1| rhomboid family protein, partial [Staphylococcus epidermidis
NIH05001]
Length = 326
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 85/152 (55%), Gaps = 5/152 (3%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F + KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 7 NIVIWLCMILYLNRF-SDVKLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 65
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F + +VGASGAIFGL+GS V +
Sbjct: 66 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGSIFVIMYL 125
Query: 254 HRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
+N K+ + L ++ +V S +NI
Sbjct: 126 SKNF---NKKMIGQLLIALVVLIVFSLFMSNI 154
>gi|418324201|ref|ZP_12935451.1| peptidase, S54 family [Staphylococcus pettenkoferi VCU012]
gi|365227449|gb|EHM68645.1| peptidase, S54 family [Staphylococcus pettenkoferi VCU012]
Length = 479
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 67/121 (55%), Gaps = 6/121 (4%)
Query: 137 LLAVNVLVYIAQFATQD-----KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
L+A+NV +++ F D KLL G ++ G+++RL TS FLH N HL++N
Sbjct: 162 LIAINVFIWLIMFLVLDRFSDFKLLDVGGLVHFNFVHGEWYRLITSMFLHFNFEHLLMNM 221
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVF 250
SL G +E I G R L +Y + + + S F ++ + GASGAIFGL+G+ F
Sbjct: 222 LSLFIFGKIVESIVGHWRMLVIYLFAGLFGNFASLSFNTHTVSAGASGAIFGLIGAIFTF 281
Query: 251 I 251
+
Sbjct: 282 M 282
>gi|325677503|ref|ZP_08157167.1| rhomboid family protein [Rhodococcus equi ATCC 33707]
gi|325551750|gb|EGD21448.1| rhomboid family protein [Rhodococcus equi ATCC 33707]
Length = 300
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 78/167 (46%), Gaps = 27/167 (16%)
Query: 134 TNILLAVNVLVYIAQFATQDK--------------LLLWGAKINSLIDKGQFWRLATSAF 179
T +L+AVNV ++ A A Q + +LWG + + G+F R+ TS F
Sbjct: 86 TYVLIAVNVAIF-AVTAVQSRSVMDNHVASPLFLDWVLWGPAVAA----GEFSRIVTSGF 140
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASG 238
LH + HL VN ++L IG E + G RY VY + + SA P GASG
Sbjct: 141 LHIGLMHLAVNMFALYVIGRDTEMVLGRARYFAVYVIALLGGSASVLMLDPLVPTAGASG 200
Query: 239 AIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
AIFGL+G+ AV ++R K + VI N++ S I
Sbjct: 201 AIFGLLGAQAVILLRL-------KRSPTPVLAVIAINVIISITIPGI 240
>gi|302552712|ref|ZP_07305054.1| rhomboid family protein [Streptomyces viridochromogenes DSM 40736]
gi|302470330|gb|EFL33423.1| rhomboid family protein [Streptomyces viridochromogenes DSM 40736]
Length = 296
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 79/160 (49%), Gaps = 14/160 (8%)
Query: 108 TRKNSGHEGTSHLDTARTNLFIG---RQWTNILLAVNVLVYIAQFATQD---KLLLWGA- 160
T +GH T+ + I R T IL+ +N+ V+IA + L+L GA
Sbjct: 57 TGSGTGHAPTAAMPRTLAGGSIAADPRLLTKILIGINLAVFIAVKVHESLLTDLVLLGAW 116
Query: 161 -----KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
+ G+++R+ TS F H I H+ N SL +G +E G RYL +Y
Sbjct: 117 PPAPYAPTQGVAGGEWYRMVTSMFTHQEIWHIAFNMLSLWWLGGPLEAALGRVRYLALYL 176
Query: 216 SSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFIMR 253
S +A SA++Y N+ +GASGAIFGL G+ AV + R
Sbjct: 177 VSGLAGSALAYLLASPNTATLGASGAIFGLFGATAVLMRR 216
>gi|373953754|ref|ZP_09613714.1| Rhomboid family protein [Mucilaginibacter paludis DSM 18603]
gi|373890354|gb|EHQ26251.1| Rhomboid family protein [Mucilaginibacter paludis DSM 18603]
Length = 554
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
LL WG + + + +GQ+WRL T+ FLH + H+++N Y L +G +E + G +RY Y
Sbjct: 444 LLKWGGNLRTNVIQGQYWRLLTNIFLHGGLMHVLMNMYGLLFVGIFLEPLMGVKRYTLAY 503
Query: 215 FSSAI-ASSAMSYRFCNSPAVGASGAIFGLVGSF 247
+ I AS A + + ++GASGAIFG+ G F
Sbjct: 504 IGTGILASIASIWWHPATVSIGASGAIFGMYGIF 537
>gi|149183248|ref|ZP_01861692.1| YdcA [Bacillus sp. SG-1]
gi|148849044|gb|EDL63250.1| YdcA [Bacillus sp. SG-1]
Length = 212
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 81/152 (53%), Gaps = 8/152 (5%)
Query: 136 ILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLN 195
+L +V ++ ++ + + L A IN I G++WRL T F+H AHL+ N +SL
Sbjct: 38 LLFSVALVPFLPEILVYEHL----AGINLYIFNGEWWRLITPIFVHLGFAHLLFNSFSLI 93
Query: 196 SIGPTMEKICGPRRYLGVYFSSAIASSAMSY--RFCNSPAVGASGAIFGLVGSFAVFIMR 253
P +E++ G ++ +Y + IA++ +Y + VGASGAIFGL G + +
Sbjct: 94 LFAPPLERMLGKFKFTIIYLTCGIAANIATYFLKPLTYNHVGASGAIFGLFGIYVGMTLF 153
Query: 254 HRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
H++++ + Q + +++ +V + ANI
Sbjct: 154 HKHLI--STQNKQVIIPIVVIGLVMTFFQANI 183
>gi|394994552|ref|ZP_10387265.1| YdcA, partial [Bacillus sp. 916]
gi|393804581|gb|EJD65987.1| YdcA, partial [Bacillus sp. 916]
Length = 184
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 81/154 (52%), Gaps = 7/154 (4%)
Query: 137 LLAVNVLVYIAQFATQDKLLLWGAKI---NSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
+LA+ +++ +++W + N + G++WRL T FLHAN HL+ N S
Sbjct: 21 ILALQAFLWLFFSMPLHSVMMWSDAVTGYNYGVSSGEWWRLVTPMFLHANFTHLLFNSMS 80
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSY--RFCNSPAVGASGAIFGLVGSFAVFI 251
L P +E++ G R+L VY +S I + +Y + VGASGAIFGL G +
Sbjct: 81 LFLFAPPLEQMLGKVRFLVVYIASGIIGNIGTYLAEPLDYVHVGASGAIFGLFGVYVFLT 140
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
+ + ++ G+++ + + ++I ++ + +NI
Sbjct: 141 VFRKELI--GRDQSKMIMTLLIIAVLSTFINSNI 172
>gi|311071132|ref|YP_003976055.1| hypothetical protein BATR1942_21045 [Bacillus atrophaeus 1942]
gi|419823027|ref|ZP_14346590.1| hypothetical protein UY9_16511 [Bacillus atrophaeus C89]
gi|310871649|gb|ADP35124.1| hypothetical protein BATR1942_21045 [Bacillus atrophaeus 1942]
gi|388472834|gb|EIM09594.1| hypothetical protein UY9_16511 [Bacillus atrophaeus C89]
Length = 199
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 68/127 (53%), Gaps = 5/127 (3%)
Query: 137 LLAVNVLVYIAQFATQDKLLLWGAKI---NSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
+LA+ +++I ++LWG + N + G++WRL T FLHA AHL+ N S
Sbjct: 21 ILAIQSVLWIFCKLPIHSVILWGDAVTGYNLGVANGEWWRLITPIFLHAGFAHLLFNSMS 80
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSY--RFCNSPAVGASGAIFGLVGSFAVFI 251
+ P +E++ G R+L VY S I + +Y + VGASGAIFGL G + +
Sbjct: 81 IFLFAPALERLLGKARFLLVYVGSGIIGNVGTYFTESLDYVHVGASGAIFGLFGVYLYMV 140
Query: 252 MRHRNIL 258
+ + ++
Sbjct: 141 LYRKELI 147
>gi|311030831|ref|ZP_07708921.1| Serine protease of Rhomboid family, contains TPR repeats [Bacillus
sp. m3-13]
Length = 503
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 55/94 (58%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK N I +G++WR T LH HL++N ++ +G +E+I G R+L
Sbjct: 204 ETLVKYGAKYNPAILEGEWWRFFTPIVLHIGFLHLLLNTMAIFYLGSAVERIYGNIRFLA 263
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
+Y + S S+ F +S + GASGAIFG G+
Sbjct: 264 IYLFAGFTGSLASFVFTSSLSAGASGAIFGCFGA 297
>gi|359425053|ref|ZP_09216156.1| rhomboid family protein [Gordonia amarae NBRC 15530]
gi|358239633|dbj|GAB05738.1| rhomboid family protein [Gordonia amarae NBRC 15530]
Length = 299
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 67/129 (51%), Gaps = 11/129 (8%)
Query: 137 LLAVNVLVYI---AQFATQDKL-----LLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
L+A NVLV++ Q D L W A + G++WRL T+ FLH ++ H+
Sbjct: 79 LIAFNVLVFVICVGQAGGTDMLNSSLFTDW-ALFKPFVHDGEYWRLLTAGFLHFSLTHIA 137
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGS 246
N SL +G +E G RY GVY +S + SA F + GASGAI+GL+G+
Sbjct: 138 ANMLSLFLLGRDLELAIGYPRYAGVYLASLVGGSAAVMLFAGDLTINAGASGAIYGLMGA 197
Query: 247 FAVFIMRHR 255
V ++R R
Sbjct: 198 MLVIVLRMR 206
>gi|420184523|ref|ZP_14690632.1| rhomboid family protein [Staphylococcus epidermidis NIHLM040]
gi|394257174|gb|EJE02096.1| rhomboid family protein [Staphylococcus epidermidis NIHLM040]
Length = 486
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F + +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRN 256
+N
Sbjct: 286 SKN 288
>gi|335430608|ref|ZP_08557497.1| rhomboid family protein [Haloplasma contractile SSD-17B]
gi|335431252|ref|ZP_08558135.1| rhomboid family protein [Haloplasma contractile SSD-17B]
gi|334886957|gb|EGM25302.1| rhomboid family protein [Haloplasma contractile SSD-17B]
gi|334887825|gb|EGM26144.1| rhomboid family protein [Haloplasma contractile SSD-17B]
Length = 214
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 82/164 (50%), Gaps = 17/164 (10%)
Query: 137 LLAVNVLVYIAQFATQDKLLL-----------WGAKINSLID-KGQFWRLATSAFLHANI 184
L+ +NVLV+I + LL GA ID GQF+R T+ FLH N
Sbjct: 23 LIVLNVLVFIIMMINRYTNLLTDLLNGYTLIQLGAIQTYTIDATGQFYRFLTAMFLHGNF 82
Query: 185 AHLMVNC-YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN--SPAVGASGAIF 241
H++ N + L +G +E + G R+ VYF + IASS Y + VGASGAI+
Sbjct: 83 LHILFNMFFGLIILGAALEGLIGSTRFFIVYFLTGIASSYGVYLLSGPYTVTVGASGAIY 142
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
G++G I+ + ++ +L +A++II N++ S + I
Sbjct: 143 GILGVLLFMIVFKKTLVPYNDRKL--IAQLIILNVILSFVLSGI 184
>gi|392945858|ref|ZP_10311500.1| putative membrane protein [Frankia sp. QA3]
gi|392289152|gb|EIV95176.1| putative membrane protein [Frankia sp. QA3]
Length = 341
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 87/167 (52%), Gaps = 23/167 (13%)
Query: 134 TNILLAVNVLVYIAQFAT-----------QDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
T IL+ + V+ YI Q A D + G +I +D Q++RL T+AFLHA
Sbjct: 134 TQILIGLCVVAYILQGAPGLAGGDTSNRFTDDFAMIGFRIA--VDD-QYYRLLTAAFLHA 190
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAI 240
+ H++ N Y+L +G +E I G RYLG++ + A+ + +SY ++ +VGAS AI
Sbjct: 191 GVLHILFNMYALYLLGFQLEAILGRARYLGLFVAGAVGGNTLSYLLGGLSTASVGASTAI 250
Query: 241 FGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANIVK 287
F ++ V R R + Q + V+ N++ + +F++I K
Sbjct: 251 FAFFSAYYVIARRLR-------VDSQQILIVLGINLLITFSFSSIDK 290
>gi|417643203|ref|ZP_12293263.1| peptidase, S54 family [Staphylococcus warneri VCU121]
gi|330685982|gb|EGG97605.1| peptidase, S54 family [Staphylococcus epidermidis VCU121]
Length = 405
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 72/118 (61%), Gaps = 3/118 (2%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
+N++L + +++Y +F+ KLL G ++ + G+++RL TS FLH N H+++N S
Sbjct: 166 SNVILWLCMILYFNRFS-DIKLLDVGGLVHFNVVHGEWYRLVTSMFLHFNFEHILMNMLS 224
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGS-FAV 249
L G +E + G + L +Y + I + +S F + +VGASGAIFGL+GS FA+
Sbjct: 225 LYIFGKIVESVLGSWKMLAIYLFAGIFGNFVSLSFNTTTISVGASGAIFGLIGSIFAI 282
>gi|154684964|ref|YP_001420125.1| hypothetical protein RBAM_004950 [Bacillus amyloliquefaciens FZB42]
gi|375361124|ref|YP_005129163.1| Rhomboid-like protease 4 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|384264056|ref|YP_005419763.1| putative RNA binding protein containing S1 RNA binding domain,YdcI
[Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387896968|ref|YP_006327264.1| rhomboid protease [Bacillus amyloliquefaciens Y2]
gi|421732888|ref|ZP_16172004.1| rhomboid protease [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|452854498|ref|YP_007496181.1| Putative rhomboid protease ydcA [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
gi|154350815|gb|ABS72894.1| YdcA [Bacillus amyloliquefaciens FZB42]
gi|371567118|emb|CCF03968.1| Rhomboid-like protease 4 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|380497409|emb|CCG48447.1| putative RNA binding protein containing S1 RNA binding domain,YdcI
[Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387171078|gb|AFJ60539.1| Rhomboid protease [Bacillus amyloliquefaciens Y2]
gi|407073249|gb|EKE46246.1| rhomboid protease [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|452078758|emb|CCP20509.1| Putative rhomboid protease ydcA [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
Length = 199
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 70/134 (52%), Gaps = 5/134 (3%)
Query: 137 LLAVNVLVYIAQFATQDKLLLWGAKI---NSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
+LA+ +++ +++W + N + G++WRL T FLHAN HL+ N S
Sbjct: 21 ILALQAFLWLFFSMPLHSVMMWSDAVTGYNYGVSSGEWWRLVTPMFLHANFTHLLFNSMS 80
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSY--RFCNSPAVGASGAIFGLVGSFAVFI 251
L P +E++ G R+L VY +S I + +Y + VGASGAIFGL G +
Sbjct: 81 LFLFAPPLEQMLGKVRFLIVYIASGIIGNIGTYLAEPLDYVHVGASGAIFGLFGVYVFLT 140
Query: 252 MRHRNILGGGKEEL 265
+ + ++G + ++
Sbjct: 141 VFRKELIGRDQSKM 154
>gi|418325502|ref|ZP_12936708.1| peptidase, S54 family [Staphylococcus epidermidis VCU071]
gi|365228104|gb|EHM69289.1| peptidase, S54 family [Staphylococcus epidermidis VCU071]
Length = 486
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F + +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRN 256
+N
Sbjct: 286 SKN 288
>gi|291521749|emb|CBK80042.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Coprococcus catus GD/7]
Length = 211
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 73/131 (55%), Gaps = 6/131 (4%)
Query: 164 SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA 223
++I++ +++RL T F+H I+HL N L IG +E+ G +YL VY ++ + SSA
Sbjct: 56 AIIEEHEYYRLLTCTFIHFGISHLFNNMLVLAYIGDNLERALGKFKYLIVYLAAGVGSSA 115
Query: 224 MSYRFC-----NSPAVGASGAIFGLVGSFAVFIMRHRNILGG-GKEELQHLAKVIIFNMV 277
+S + S + GASGAIFG+VG+ V ++R+R L +L A I++ V
Sbjct: 116 VSAVWSMIKDEYSVSGGASGAIFGVVGALLVIVIRNRGQLEDLNSRQLMLFAGFSIYHGV 175
Query: 278 CSAAFANIVKI 288
SA N+ I
Sbjct: 176 TSAGIDNMAHI 186
>gi|160878203|ref|YP_001557171.1| rhomboid family protein [Clostridium phytofermentans ISDg]
gi|160426869|gb|ABX40432.1| Rhomboid family protein [Clostridium phytofermentans ISDg]
Length = 396
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 85/149 (57%), Gaps = 13/149 (8%)
Query: 134 TNILLAVNVLV--YIAQFATQDKLLLWGAKINSLID-KGQFWRLATSAFLHANIAHLMVN 190
T +L+A+N +V Y +K++ G LI +++RL T FLHANI+HL+ N
Sbjct: 209 TLVLIALNAVVFFYTDLSGNYNKIISEGCIFWPLIKFNNEYYRLLTYQFLHANISHLVNN 268
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIAS--SAMSYRFCN---SPAVGASGAIFGLVG 245
L +G T+E+ G +YL +YF S I + ++MSY S ++GASGA+FG++G
Sbjct: 269 MLILAIMGSTLERHVGKFKYLLIYFLSGIVAGIASMSYNMWKGLFSNSIGASGAVFGVIG 328
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIF 274
+ A+ ++ ++ G+ E ++IIF
Sbjct: 329 AIALIVVVNK-----GRLETIGTRQIIIF 352
>gi|88195357|ref|YP_500161.1| rhomboid family protein, partial [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|87202915|gb|ABD30725.1| rhomboid family protein [Staphylococcus aureus subsp. aureus NCTC
8325]
Length = 336
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 70/115 (60%), Gaps = 2/115 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGS 246
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS 278
>gi|383316784|ref|YP_005377626.1| hypothetical protein [Frateuria aurantia DSM 6220]
gi|379043888|gb|AFC85944.1| putative membrane protein [Frateuria aurantia DSM 6220]
Length = 216
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 18/140 (12%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL----LWGAKINSLIDKG--------QFWRLATSAFLH 181
T +L+A+NVLVY+ Q D LL LW + + + W+L + AF+H
Sbjct: 9 TKVLMALNVLVYLLQQVWHDPLLVHAALWPLGPDQMAQTATGVVAVGFRPWQLISYAFMH 68
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFS----SAIASSAMSYRFCNS--PAVG 235
++ H++ N +L G T+E+ G R++ YF+ +A+A A++ F P +G
Sbjct: 69 GSVTHILFNMLALWMFGGTIERTLGTPRFVIYYFACLVCAALAQLAVTAWFLPGFYPTLG 128
Query: 236 ASGAIFGLVGSFAVFIMRHR 255
ASGA+FGL+ +F VF R +
Sbjct: 129 ASGAVFGLLLAFGVFYPREK 148
>gi|149922613|ref|ZP_01911041.1| Rhomboid-like protein [Plesiocystis pacifica SIR-1]
gi|149816499|gb|EDM75996.1| Rhomboid-like protein [Plesiocystis pacifica SIR-1]
Length = 368
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 145 YIAQFATQDKLLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTME 202
Y+ F + L WGA N ID GQ+WRLA++ FLH + HL +N ++ S+G E
Sbjct: 50 YLVLFEDLELLEAWGALTPANIWID-GQWWRLASAGFLHGSWLHLGLNMLAMWSVGRWTE 108
Query: 203 KICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAV 249
I GP R L ++ +S++ S + SP VGAS IFG+ G V
Sbjct: 109 SIWGPWRQLALFMASSLGGCLASVAWAESPLVVGASAGIFGIAGGLLV 156
>gi|379021331|ref|YP_005297993.1| putative membrane peptidase, contains TPRrepeat domain
[Staphylococcus aureus subsp. aureus M013]
gi|418562599|ref|ZP_13127056.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21262]
gi|359830640|gb|AEV78618.1| Putative membrane peptidase, contains TPRrepeat domain
[Staphylococcus aureus subsp. aureus M013]
gi|371973703|gb|EHO91051.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21262]
Length = 487
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|418313141|ref|ZP_12924635.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21334]
gi|365236412|gb|EHM77301.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21334]
Length = 487
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|294813767|ref|ZP_06772410.1| Putative membrane protein [Streptomyces clavuligerus ATCC 27064]
gi|326442188|ref|ZP_08216922.1| hypothetical protein SclaA2_14039 [Streptomyces clavuligerus ATCC
27064]
gi|294326366|gb|EFG08009.1| Putative membrane protein [Streptomyces clavuligerus ATCC 27064]
Length = 301
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 74/132 (56%), Gaps = 12/132 (9%)
Query: 134 TNILLAVNVLVYI------AQFATQDKLLLWG--AKINSLIDKG--QFWRLATSAFLHAN 183
T +L+ +NV V+ +F +Q +L+ + ++ ++ Q++RL T+ FLH
Sbjct: 91 TKVLIGLNVAVFALVLSLGERFVSQLELIGYAFSPQLGEIVGVAHDQWYRLLTAVFLHQE 150
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIF 241
++H++ N L +G +E G RR+L +Y S + S ++Y N P++GASGAIF
Sbjct: 151 LSHILFNLLGLWFLGRMVEPALGRRRFLALYLLSGLGGSTLAYLVAEPNQPSLGASGAIF 210
Query: 242 GLVGSFAVFIMR 253
GL+G+F V R
Sbjct: 211 GLMGAFVVLARR 222
>gi|417897083|ref|ZP_12541026.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21235]
gi|341840349|gb|EGS81869.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21235]
Length = 372
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 70/115 (60%), Gaps = 2/115 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFS-DVKLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGS 246
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS 278
>gi|148268033|ref|YP_001246976.1| rhomboid family protein [Staphylococcus aureus subsp. aureus JH9]
gi|150394101|ref|YP_001316776.1| rhomboid family protein [Staphylococcus aureus subsp. aureus JH1]
gi|257793625|ref|ZP_05642604.1| rhomboid family protein [Staphylococcus aureus A9781]
gi|258411075|ref|ZP_05681355.1| rhomboid family protein [Staphylococcus aureus A9763]
gi|258420121|ref|ZP_05683076.1| rhomboid family protein [Staphylococcus aureus A9719]
gi|258446794|ref|ZP_05694948.1| rhomboid family protein [Staphylococcus aureus A6300]
gi|258448708|ref|ZP_05696820.1| rhomboid family protein [Staphylococcus aureus A6224]
gi|258453525|ref|ZP_05701503.1| rhomboid family protein [Staphylococcus aureus A5937]
gi|282928182|ref|ZP_06335787.1| rhomboid family protein [Staphylococcus aureus A10102]
gi|295406672|ref|ZP_06816477.1| rhomboid family protein [Staphylococcus aureus A8819]
gi|297245746|ref|ZP_06929611.1| rhomboid family protein [Staphylococcus aureus A8796]
gi|384864770|ref|YP_005750129.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ECT-R
2]
gi|387150692|ref|YP_005742256.1| Putative membrane peptidase, contains TPR repeat domain
[Staphylococcus aureus 04-02981]
gi|415692667|ref|ZP_11454587.1| Rhomboid family protein [Staphylococcus aureus subsp. aureus CGS03]
gi|417651337|ref|ZP_12301100.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21172]
gi|418424698|ref|ZP_12997812.1| hypothetical protein MQA_00546 [Staphylococcus aureus subsp. aureus
VRS1]
gi|418427692|ref|ZP_13000697.1| hypothetical protein MQC_00501 [Staphylococcus aureus subsp. aureus
VRS2]
gi|418433677|ref|ZP_13006269.1| hypothetical protein MQG_01236 [Staphylococcus aureus subsp. aureus
VRS4]
gi|418437172|ref|ZP_13008968.1| hypothetical protein MQI_01256 [Staphylococcus aureus subsp. aureus
VRS5]
gi|418440072|ref|ZP_13011773.1| hypothetical protein MQK_01111 [Staphylococcus aureus subsp. aureus
VRS6]
gi|418443090|ref|ZP_13014689.1| hypothetical protein MQM_01203 [Staphylococcus aureus subsp. aureus
VRS7]
gi|418446152|ref|ZP_13017626.1| hypothetical protein MQO_01783 [Staphylococcus aureus subsp. aureus
VRS8]
gi|418449166|ref|ZP_13020552.1| hypothetical protein MQQ_01563 [Staphylococcus aureus subsp. aureus
VRS9]
gi|418451979|ref|ZP_13023313.1| hypothetical protein MQS_00457 [Staphylococcus aureus subsp. aureus
VRS10]
gi|418454973|ref|ZP_13026232.1| hypothetical protein MQU_01088 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|418457851|ref|ZP_13029050.1| hypothetical protein MQW_01368 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|418640342|ref|ZP_13202574.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-3]
gi|418878467|ref|ZP_13432702.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1165]
gi|418881233|ref|ZP_13435450.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1213]
gi|418884081|ref|ZP_13438274.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1769]
gi|418895312|ref|ZP_13449407.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1057]
gi|418991477|ref|ZP_13539138.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1096]
gi|419784633|ref|ZP_14310396.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-M]
gi|147741102|gb|ABQ49400.1| Rhomboid family protein [Staphylococcus aureus subsp. aureus JH9]
gi|149946553|gb|ABR52489.1| Rhomboid family protein [Staphylococcus aureus subsp. aureus JH1]
gi|257787597|gb|EEV25937.1| rhomboid family protein [Staphylococcus aureus A9781]
gi|257840225|gb|EEV64689.1| rhomboid family protein [Staphylococcus aureus A9763]
gi|257843832|gb|EEV68226.1| rhomboid family protein [Staphylococcus aureus A9719]
gi|257854369|gb|EEV77318.1| rhomboid family protein [Staphylococcus aureus A6300]
gi|257857986|gb|EEV80875.1| rhomboid family protein [Staphylococcus aureus A6224]
gi|257864256|gb|EEV87006.1| rhomboid family protein [Staphylococcus aureus A5937]
gi|282589989|gb|EFB95071.1| rhomboid family protein [Staphylococcus aureus A10102]
gi|285817231|gb|ADC37718.1| Putative membrane peptidase, contains TPR repeat domain
[Staphylococcus aureus 04-02981]
gi|294968419|gb|EFG44443.1| rhomboid family protein [Staphylococcus aureus A8819]
gi|297177397|gb|EFH36649.1| rhomboid family protein [Staphylococcus aureus A8796]
gi|312829937|emb|CBX34779.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ECT-R
2]
gi|315129827|gb|EFT85817.1| Rhomboid family protein [Staphylococcus aureus subsp. aureus CGS03]
gi|329727521|gb|EGG63977.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21172]
gi|375014906|gb|EHS08577.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-3]
gi|377694589|gb|EHT18954.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1165]
gi|377695118|gb|EHT19482.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1057]
gi|377714416|gb|EHT38617.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1769]
gi|377723599|gb|EHT47724.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1096]
gi|377730976|gb|EHT55034.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1213]
gi|383363843|gb|EID41169.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-M]
gi|387717980|gb|EIK05975.1| hypothetical protein MQC_00501 [Staphylococcus aureus subsp. aureus
VRS2]
gi|387719477|gb|EIK07422.1| hypothetical protein MQA_00546 [Staphylococcus aureus subsp. aureus
VRS1]
gi|387724901|gb|EIK12532.1| hypothetical protein MQG_01236 [Staphylococcus aureus subsp. aureus
VRS4]
gi|387727160|gb|EIK14692.1| hypothetical protein MQI_01256 [Staphylococcus aureus subsp. aureus
VRS5]
gi|387730222|gb|EIK17629.1| hypothetical protein MQK_01111 [Staphylococcus aureus subsp. aureus
VRS6]
gi|387735290|gb|EIK22419.1| hypothetical protein MQO_01783 [Staphylococcus aureus subsp. aureus
VRS8]
gi|387736766|gb|EIK23854.1| hypothetical protein MQM_01203 [Staphylococcus aureus subsp. aureus
VRS7]
gi|387736929|gb|EIK24015.1| hypothetical protein MQQ_01563 [Staphylococcus aureus subsp. aureus
VRS9]
gi|387744860|gb|EIK31624.1| hypothetical protein MQS_00457 [Staphylococcus aureus subsp. aureus
VRS10]
gi|387745026|gb|EIK31788.1| hypothetical protein MQU_01088 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|387746619|gb|EIK33348.1| hypothetical protein MQW_01368 [Staphylococcus aureus subsp. aureus
VRS11b]
Length = 487
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|15924539|ref|NP_372073.1| hypothetical protein SAV1549 [Staphylococcus aureus subsp. aureus
Mu50]
gi|15927129|ref|NP_374662.1| hypothetical protein SA1379 [Staphylococcus aureus subsp. aureus
N315]
gi|57651942|ref|YP_186446.1| rhomboid family protein [Staphylococcus aureus subsp. aureus COL]
gi|87160848|ref|YP_494204.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|151221664|ref|YP_001332486.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156979867|ref|YP_001442126.1| hypothetical protein SAHV_1536 [Staphylococcus aureus subsp. aureus
Mu3]
gi|161509778|ref|YP_001575437.1| peptidase [Staphylococcus aureus subsp. aureus USA300_TCH1516]
gi|253314920|ref|ZP_04838133.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|255006335|ref|ZP_05144936.2| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|257425674|ref|ZP_05602098.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
55/2053]
gi|257428335|ref|ZP_05604733.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257430972|ref|ZP_05607352.1| peptidase [Staphylococcus aureus subsp. aureus 68-397]
gi|257433660|ref|ZP_05610018.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
E1410]
gi|257436574|ref|ZP_05612618.1| peptidase [Staphylococcus aureus subsp. aureus M876]
gi|258437381|ref|ZP_05689365.1| peptidase [Staphylococcus aureus A9299]
gi|258450622|ref|ZP_05698684.1| peptidase [Staphylococcus aureus A5948]
gi|262049127|ref|ZP_06022004.1| hypothetical protein SAD30_0284 [Staphylococcus aureus D30]
gi|262051211|ref|ZP_06023435.1| hypothetical protein SA930_1642 [Staphylococcus aureus 930918-3]
gi|269203177|ref|YP_003282446.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ED98]
gi|282911187|ref|ZP_06318989.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282914356|ref|ZP_06322142.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M899]
gi|282916819|ref|ZP_06324577.1| peptidase [Staphylococcus aureus subsp. aureus D139]
gi|282919325|ref|ZP_06327060.1| peptidase [Staphylococcus aureus subsp. aureus C427]
gi|282920098|ref|ZP_06327823.1| peptidase [Staphylococcus aureus A9765]
gi|282924650|ref|ZP_06332318.1| peptidase [Staphylococcus aureus subsp. aureus C101]
gi|283770625|ref|ZP_06343517.1| peptidase [Staphylococcus aureus subsp. aureus H19]
gi|284024608|ref|ZP_06379006.1| rhomboid family protein [Staphylococcus aureus subsp. aureus 132]
gi|293503430|ref|ZP_06667277.1| peptidase [Staphylococcus aureus subsp. aureus 58-424]
gi|293510447|ref|ZP_06669153.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M809]
gi|293530987|ref|ZP_06671669.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M1015]
gi|294848580|ref|ZP_06789326.1| peptidase [Staphylococcus aureus A9754]
gi|304380862|ref|ZP_07363522.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|384547782|ref|YP_005737035.1| membrane protein [Staphylococcus aureus subsp. aureus ED133]
gi|384870090|ref|YP_005752804.1| Peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus T0131]
gi|385781834|ref|YP_005758005.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
11819-97]
gi|387143156|ref|YP_005731549.1| hypothetical protein SATW20_15450 [Staphylococcus aureus subsp.
aureus TW20]
gi|415686263|ref|ZP_11450400.1| S54 family peptidase [Staphylococcus aureus subsp. aureus CGS01]
gi|416840018|ref|ZP_11903337.1| rhomboid family peptidase [Staphylococcus aureus O11]
gi|416845827|ref|ZP_11906228.1| rhomboid family peptidase [Staphylococcus aureus O46]
gi|417654442|ref|ZP_12304161.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21193]
gi|417797331|ref|ZP_12444527.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21305]
gi|417892437|ref|ZP_12536486.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21201]
gi|417905331|ref|ZP_12549142.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21269]
gi|418277349|ref|ZP_12891936.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21178]
gi|418285050|ref|ZP_12897750.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21209]
gi|418316423|ref|ZP_12927861.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21340]
gi|418319401|ref|ZP_12930781.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21232]
gi|418321319|ref|ZP_12932665.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus VCU006]
gi|418569512|ref|ZP_13133838.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21283]
gi|418574454|ref|ZP_13138623.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21333]
gi|418579474|ref|ZP_13143569.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1114]
gi|418599967|ref|ZP_13163441.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21343]
gi|418641900|ref|ZP_13204105.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-24]
gi|418645086|ref|ZP_13207214.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-55]
gi|418646803|ref|ZP_13208896.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-88]
gi|418650585|ref|ZP_13212603.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-91]
gi|418658392|ref|ZP_13220120.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-111]
gi|418875489|ref|ZP_13429745.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC93]
gi|418903856|ref|ZP_13457897.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1770]
gi|418912160|ref|ZP_13466141.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG547]
gi|418914647|ref|ZP_13468619.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|418925809|ref|ZP_13479711.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG2018]
gi|418948536|ref|ZP_13500834.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-157]
gi|419773145|ref|ZP_14299156.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus CO-23]
gi|421148571|ref|ZP_15608231.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. Newbould 305]
gi|422742667|ref|ZP_16796670.1| peptidase, S54 family protein [Staphylococcus aureus subsp. aureus
MRSA177]
gi|424768990|ref|ZP_18196227.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus CM05]
gi|424785384|ref|ZP_18212187.1| rhomboid family serine protease [Staphylococcus aureus CN79]
gi|440707269|ref|ZP_20887968.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21282]
gi|443640018|ref|ZP_21124018.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21196]
gi|448743065|ref|ZP_21724979.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
KT/Y21]
gi|13701347|dbj|BAB42641.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14247320|dbj|BAB57711.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu50]
gi|57286128|gb|AAW38222.1| rhomboid family protein [Staphylococcus aureus subsp. aureus COL]
gi|87126822|gb|ABD21336.1| peptidase, rhomboid family [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|150374464|dbj|BAF67724.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156722002|dbj|BAF78419.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|160368587|gb|ABX29558.1| S54 family peptidase [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|257271368|gb|EEV03514.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
55/2053]
gi|257275176|gb|EEV06663.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257278402|gb|EEV09038.1| peptidase [Staphylococcus aureus subsp. aureus 68-397]
gi|257281753|gb|EEV11890.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
E1410]
gi|257283925|gb|EEV14048.1| peptidase [Staphylococcus aureus subsp. aureus M876]
gi|257848586|gb|EEV72574.1| peptidase [Staphylococcus aureus A9299]
gi|257861780|gb|EEV84579.1| peptidase [Staphylococcus aureus A5948]
gi|259160848|gb|EEW45868.1| hypothetical protein SA930_1642 [Staphylococcus aureus 930918-3]
gi|259162796|gb|EEW47361.1| hypothetical protein SAD30_0284 [Staphylococcus aureus D30]
gi|262075467|gb|ACY11440.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ED98]
gi|269941039|emb|CBI49423.1| putative membrane protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282313485|gb|EFB43880.1| peptidase [Staphylococcus aureus subsp. aureus C101]
gi|282317135|gb|EFB47509.1| peptidase [Staphylococcus aureus subsp. aureus C427]
gi|282319306|gb|EFB49658.1| peptidase [Staphylococcus aureus subsp. aureus D139]
gi|282321537|gb|EFB51862.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M899]
gi|282324882|gb|EFB55192.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282594446|gb|EFB99431.1| peptidase [Staphylococcus aureus A9765]
gi|283460772|gb|EFC07862.1| peptidase [Staphylococcus aureus subsp. aureus H19]
gi|290920255|gb|EFD97321.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M1015]
gi|291095096|gb|EFE25361.1| peptidase [Staphylococcus aureus subsp. aureus 58-424]
gi|291466811|gb|EFF09331.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M809]
gi|294824606|gb|EFG41029.1| peptidase [Staphylococcus aureus A9754]
gi|298694831|gb|ADI98053.1| probable membrane protein [Staphylococcus aureus subsp. aureus
ED133]
gi|304340589|gb|EFM06523.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|315198756|gb|EFU29084.1| S54 family peptidase [Staphylococcus aureus subsp. aureus CGS01]
gi|320144103|gb|EFW35872.1| peptidase, S54 family protein [Staphylococcus aureus subsp. aureus
MRSA177]
gi|323440447|gb|EGA98159.1| rhomboid family peptidase [Staphylococcus aureus O11]
gi|323443221|gb|EGB00839.1| rhomboid family peptidase [Staphylococcus aureus O46]
gi|329314225|gb|AEB88638.1| Peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus T0131]
gi|329730828|gb|EGG67206.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21193]
gi|334266823|gb|EGL85293.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21305]
gi|341843607|gb|EGS84829.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21269]
gi|341857602|gb|EGS98414.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21201]
gi|364522823|gb|AEW65573.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
11819-97]
gi|365172061|gb|EHM62806.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21209]
gi|365173639|gb|EHM64128.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21178]
gi|365225551|gb|EHM66794.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus VCU006]
gi|365240520|gb|EHM81292.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21232]
gi|365241107|gb|EHM81862.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21340]
gi|371979181|gb|EHO96416.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21333]
gi|371985641|gb|EHP02702.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21283]
gi|374395556|gb|EHQ66819.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21343]
gi|375018355|gb|EHS11935.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-24]
gi|375023919|gb|EHS17364.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-55]
gi|375027871|gb|EHS21229.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-91]
gi|375032097|gb|EHS25352.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-88]
gi|375038662|gb|EHS31625.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-111]
gi|375371869|gb|EHS75629.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-157]
gi|377697501|gb|EHT21856.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1114]
gi|377722417|gb|EHT46543.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG547]
gi|377742871|gb|EHT66856.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1770]
gi|377744878|gb|EHT68855.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG2018]
gi|377758149|gb|EHT82037.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|377769561|gb|EHT93329.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC93]
gi|383972969|gb|EID88990.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus CO-23]
gi|394331714|gb|EJE57797.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. Newbould 305]
gi|402348381|gb|EJU83373.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus CM05]
gi|408423672|emb|CCJ11083.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408425662|emb|CCJ13049.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408427649|emb|CCJ15012.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408429638|emb|CCJ26803.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408431625|emb|CCJ18940.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408433619|emb|CCJ20904.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408435611|emb|CCJ22871.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408437595|emb|CCJ24838.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|421956794|gb|EKU09123.1| rhomboid family serine protease [Staphylococcus aureus CN79]
gi|436506025|gb|ELP41864.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21282]
gi|443406293|gb|ELS64877.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21196]
gi|445563752|gb|ELY19909.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
KT/Y21]
Length = 487
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|404212656|ref|YP_006666831.1| putative membrane protein [Gordonia sp. KTR9]
gi|403643455|gb|AFR46695.1| putative membrane protein [Gordonia sp. KTR9]
Length = 237
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 72/131 (54%), Gaps = 9/131 (6%)
Query: 134 TNILLAVNVLVY---IAQFATQD----KLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T L+AVN+LV+ + Q D + G + S + G++WRL T+ FLH ++ H
Sbjct: 14 TYALIAVNLLVFALCVLQSGVGDPGGASIFSAGDLLKSDVASGEYWRLLTAGFLHFSVMH 73
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLV 244
+ VN SL +G +E G RYL VY + + SA F + A+ GASGAI+GL+
Sbjct: 74 VAVNMLSLYILGRDLELALGIGRYLAVYGIALLGGSAAVMLFEDDRALTAGASGAIYGLM 133
Query: 245 GSFAVFIMRHR 255
G+ V +++ R
Sbjct: 134 GAMLVIVLKAR 144
>gi|383320817|ref|YP_005381658.1| hypothetical protein Mtc_2409 [Methanocella conradii HZ254]
gi|379322187|gb|AFD01140.1| putative membrane protein [Methanocella conradii HZ254]
Length = 261
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLL-LWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
+ I++ + VLV+I Q L L+ + SL+ + W L TS FLHA +AHL N
Sbjct: 74 YAYIIIGITVLVFILQLLLDPWLTGLFDLSMGSLLSRP--WGLVTSMFLHAGLAHLFFNM 131
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAI-ASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
+L GP +E+ + +L +YF S I A + F S +GASGAIFG++G+ V
Sbjct: 132 LALFFFGPLLERRIESKGFLALYFGSGILAGLVQVFIFPTSAVIGASGAIFGVLGALTVL 191
Query: 251 I 251
+
Sbjct: 192 M 192
>gi|384550376|ref|YP_005739628.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus JKD6159]
gi|302333225|gb|ADL23418.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus JKD6159]
Length = 487
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|258423202|ref|ZP_05686095.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|417889989|ref|ZP_12534068.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21200]
gi|418284049|ref|ZP_12896781.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21202]
gi|418558986|ref|ZP_13123533.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21252]
gi|418889364|ref|ZP_13443497.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1524]
gi|257846652|gb|EEV70673.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|341855682|gb|EGS96526.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21200]
gi|365164913|gb|EHM56743.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21202]
gi|371976336|gb|EHO93626.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21252]
gi|377752872|gb|EHT76790.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1524]
Length = 487
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|421776991|ref|ZP_16213591.1| peptidase, S54 family protein [Escherichia coli AD30]
gi|408457883|gb|EKJ81674.1| peptidase, S54 family protein [Escherichia coli AD30]
Length = 265
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 68/120 (56%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLSLSGEPWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+ +G E+I G R L ++ S + +S Y C+S +VGASGAI G+ G+
Sbjct: 83 AFLVVGAVAERILGKWRLLIIWLFSGVFDGLISACYALCDSEQIVISVGASGAIMGIAGA 142
>gi|418906494|ref|ZP_13460520.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|418928899|ref|ZP_13482785.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1612]
gi|377738811|gb|EHT62820.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1612]
gi|377763399|gb|EHT87255.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC345D]
Length = 470
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 148 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 206
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 207 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 264
Query: 252 MRH 254
M +
Sbjct: 265 MMY 267
>gi|418931854|ref|ZP_13485689.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1750]
gi|377713032|gb|EHT37245.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1750]
Length = 470
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 148 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 206
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 207 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 264
Query: 252 MRH 254
M +
Sbjct: 265 MMY 267
>gi|49483798|ref|YP_041022.1| hypothetical protein SAR1626 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|282904131|ref|ZP_06312019.1| rhomboid family protein [Staphylococcus aureus subsp. aureus C160]
gi|282905958|ref|ZP_06313813.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282908868|ref|ZP_06316686.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|283958313|ref|ZP_06375764.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
A017934/97]
gi|295428127|ref|ZP_06820759.1| hypothetical protein SIAG_00655 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297590907|ref|ZP_06949545.1| rhomboid family protein [Staphylococcus aureus subsp. aureus MN8]
gi|415682351|ref|ZP_11447667.1| hypothetical protein CGSSa00_07270 [Staphylococcus aureus subsp.
aureus CGS00]
gi|417887902|ref|ZP_12532021.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21195]
gi|418564826|ref|ZP_13129247.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21264]
gi|418582476|ref|ZP_13146554.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1605]
gi|418597192|ref|ZP_13160725.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21342]
gi|418601009|ref|ZP_13164457.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21345]
gi|418901054|ref|ZP_13455110.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1214]
gi|418909401|ref|ZP_13463397.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG149]
gi|418923231|ref|ZP_13477147.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1233]
gi|418982555|ref|ZP_13530263.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1242]
gi|418986221|ref|ZP_13533906.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1500]
gi|49241927|emb|CAG40621.1| putative membrane protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|282327132|gb|EFB57427.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282331250|gb|EFB60764.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282595749|gb|EFC00713.1| rhomboid family protein [Staphylococcus aureus subsp. aureus C160]
gi|283790462|gb|EFC29279.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
A017934/97]
gi|295128485|gb|EFG58119.1| hypothetical protein SIAG_00655 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297575793|gb|EFH94509.1| rhomboid family protein [Staphylococcus aureus subsp. aureus MN8]
gi|315195451|gb|EFU25838.1| hypothetical protein CGSSa00_07270 [Staphylococcus aureus subsp.
aureus CGS00]
gi|341856931|gb|EGS97758.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21195]
gi|371975963|gb|EHO93255.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21264]
gi|374395428|gb|EHQ66695.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21342]
gi|374400256|gb|EHQ71375.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21345]
gi|377702451|gb|EHT26773.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1214]
gi|377704265|gb|EHT28575.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1500]
gi|377704836|gb|EHT29145.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1242]
gi|377710886|gb|EHT35124.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1605]
gi|377735190|gb|EHT59226.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1233]
gi|377752048|gb|EHT75972.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG149]
Length = 487
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|21283230|ref|NP_646318.1| hypothetical protein MW1501 [Staphylococcus aureus subsp. aureus
MW2]
gi|49486385|ref|YP_043606.1| hypothetical protein SAS1487 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|253732202|ref|ZP_04866367.1| S54 family peptidase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|297207732|ref|ZP_06924167.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|300911813|ref|ZP_07129256.1| rhomboid family protein [Staphylococcus aureus subsp. aureus TCH70]
gi|418934519|ref|ZP_13488341.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC128]
gi|418988616|ref|ZP_13536288.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1835]
gi|448740624|ref|ZP_21722600.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
KT/314250]
gi|21204670|dbj|BAB95366.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49244828|emb|CAG43288.1| putative membrane protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|253723991|gb|EES92720.1| S54 family peptidase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|296887749|gb|EFH26647.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|300886059|gb|EFK81261.1| rhomboid family protein [Staphylococcus aureus subsp. aureus TCH70]
gi|377717709|gb|EHT41884.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1835]
gi|377770613|gb|EHT94374.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC128]
gi|445548591|gb|ELY16841.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
KT/314250]
Length = 487
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|383829530|ref|ZP_09984619.1| putative membrane protein [Saccharomonospora xinjiangensis XJ-54]
gi|383462183|gb|EID54273.1| putative membrane protein [Saccharomonospora xinjiangensis XJ-54]
Length = 317
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 83/164 (50%), Gaps = 24/164 (14%)
Query: 136 ILLAVNVLVYI-AQFATQDKL-----------LLWGAKINSLIDKGQFWRLATSAFLHAN 183
+L+AVNV+V++ F +D + +LW +++ ++WRL TS FLH
Sbjct: 97 LLIAVNVVVFVLTAFQARDAMNNYNSPVFAEGVLWP---QAVVAFDEWWRLITSGFLHYG 153
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIF 241
+ HL +N +L +G +E + G R+L VYF S + A + F + GASGAI+
Sbjct: 154 LLHLAMNMLALWVLGRDLEMLLGRVRFLAVYFVSMLGGGAAVFAFGAPETSTAGASGAIY 213
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
GL+G+ V ++R R +I+ N++ + + NI
Sbjct: 214 GLMGAMLVAVLRLR-------LNPTTAIGIIVLNLILTVSIPNI 250
>gi|386831159|ref|YP_006237813.1| hypothetical protein SAEMRSA15_14690 [Staphylococcus aureus subsp.
aureus HO 5096 0412]
gi|417798923|ref|ZP_12446077.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21310]
gi|418654972|ref|ZP_13216857.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-105]
gi|334275085|gb|EGL93386.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21310]
gi|375038535|gb|EHS31510.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-105]
gi|385196551|emb|CCG16180.1| putative membrane protein [Staphylococcus aureus subsp. aureus HO
5096 0412]
Length = 487
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|168002718|ref|XP_001754060.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694614|gb|EDQ80961.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 579
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 85/160 (53%), Gaps = 16/160 (10%)
Query: 133 WTNILLAVNVLVYIAQFATQDKL---------LLWGAKINSLIDKGQFWRLATSAFLHAN 183
+ N L+A+N+ VY+ A+ ++ L+GAK+N LI G +WRL T FLH+
Sbjct: 324 FVNGLVALNIAVYLFGLASPLEVPGMVDASLPYLYGAKVNELIVNGDWWRLVTPMFLHSG 383
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGL 243
+ HL ++ ++L GP +E G + +Y + +S+ VG SG IF L
Sbjct: 384 LLHLGLSTWALLEFGPAVESAYGTLGFTMIYLLGGAYGNLLSFFHTPQGTVGGSGPIFAL 443
Query: 244 VGSFAVFIMRHRNILG---GGKEELQHLAKVIIFNMVCSA 280
+ ++ V+I+R+R+I+G G + + KVIIF + A
Sbjct: 444 MAAWVVYILRNRDIIGLDVAG----EIVRKVIIFTAITYA 479
>gi|417649370|ref|ZP_12299174.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21189]
gi|440735000|ref|ZP_20914611.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus DSM
20231]
gi|329728476|gb|EGG64913.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21189]
gi|436431095|gb|ELP28449.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus DSM
20231]
Length = 487
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|408679359|ref|YP_006879186.1| putative membrane protein [Streptomyces venezuelae ATCC 10712]
gi|328883688|emb|CCA56927.1| putative membrane protein [Streptomyces venezuelae ATCC 10712]
Length = 294
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 70/135 (51%), Gaps = 12/135 (8%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL--------LWGAKINSLID--KGQFWRLATSAFLHAN 183
T IL+ VN+ VY+A D+L+ W + ++ G+++RL TS LH
Sbjct: 84 TKILIGVNLAVYLAVLVFGDRLVDELVLIGYAWSPALGEVVGVADGEWYRLLTSTVLHQE 143
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIF 241
+ H++ N L IG +E G RY + S ++ S ++Y N P++GASG ++
Sbjct: 144 VWHILFNVLGLWVIGGIVEPELGRIRYAALCLLSGLSGSVLAYVVAEPNQPSLGASGVVY 203
Query: 242 GLVGSFAVFIMRHRN 256
GL+G++ V R R+
Sbjct: 204 GLIGAWVVLARRRRH 218
>gi|422746158|ref|ZP_16800091.1| peptidase, S54 family protein [Staphylococcus aureus subsp. aureus
MRSA131]
gi|320140566|gb|EFW32420.1| peptidase, S54 family protein [Staphylococcus aureus subsp. aureus
MRSA131]
Length = 487
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|379014757|ref|YP_005290993.1| putative rhomboid family protein, truncated, partial
[Staphylococcus aureus subsp. aureus VC40]
gi|374363454|gb|AEZ37559.1| putative rhomboid family protein, truncated [Staphylococcus aureus
subsp. aureus VC40]
Length = 423
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|296275094|ref|ZP_06857601.1| rhomboid family protein [Staphylococcus aureus subsp. aureus MR1]
Length = 487
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|418327645|ref|ZP_12938790.1| peptidase, S54 family [Staphylococcus epidermidis 14.1.R1.SE]
gi|365232769|gb|EHM73752.1| peptidase, S54 family [Staphylococcus epidermidis 14.1.R1.SE]
Length = 234
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 42 NIVIWLCMILYLNRFS-DVKLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 100
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F S +VGASGAIFGL+GS V +
Sbjct: 101 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTSTISVGASGAIFGLIGSIFVIMYL 160
Query: 254 HRN 256
+N
Sbjct: 161 SKN 163
>gi|418430534|ref|ZP_13003445.1| hypothetical protein MQE_01426 [Staphylococcus aureus subsp. aureus
VRS3a]
gi|387718274|gb|EIK06258.1| hypothetical protein MQE_01426 [Staphylococcus aureus subsp. aureus
VRS3a]
Length = 487
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|418309099|ref|ZP_12920674.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21194]
gi|365235250|gb|EHM76170.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21194]
Length = 364
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 70/115 (60%), Gaps = 2/115 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFS-DVKLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGS 246
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS 278
>gi|386729250|ref|YP_006195633.1| integral membrane protein (Rhomboid family) [Staphylococcus aureus
subsp. aureus 71193]
gi|387602889|ref|YP_005734410.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ST398]
gi|404478900|ref|YP_006710330.1| hypothetical protein C248_1592 [Staphylococcus aureus 08BA02176]
gi|418309989|ref|ZP_12921539.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21331]
gi|418978272|ref|ZP_13526073.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
subsp. aureus DR10]
gi|283470827|emb|CAQ50038.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ST398]
gi|365237446|gb|EHM78292.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21331]
gi|379993888|gb|EIA15333.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
subsp. aureus DR10]
gi|384230543|gb|AFH69790.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
subsp. aureus 71193]
gi|404440389|gb|AFR73582.1| putative membrane protein [Staphylococcus aureus 08BA02176]
Length = 487
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|221140031|ref|ZP_03564524.1| peptidase [Staphylococcus aureus subsp. aureus str. JKD6009]
gi|384862151|ref|YP_005744871.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|302751380|gb|ADL65557.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. JKD6008]
Length = 487
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|418952134|ref|ZP_13504176.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-160]
gi|375369792|gb|EHS73653.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-160]
Length = 303
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 70/115 (60%), Gaps = 2/115 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 104 FVNVLIWLCMILYLNNFS-DVKLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 162
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGS 246
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS
Sbjct: 163 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS 217
>gi|418605748|ref|ZP_13169055.1| peptidase, S54 family [Staphylococcus epidermidis VCU041]
gi|420220495|ref|ZP_14725454.1| rhomboid family protein [Staphylococcus epidermidis NIH04008]
gi|420232065|ref|ZP_14736707.1| peptidase, S54 family [Staphylococcus epidermidis NIH051668]
gi|374401451|gb|EHQ72524.1| peptidase, S54 family [Staphylococcus epidermidis VCU041]
gi|394285848|gb|EJE29914.1| rhomboid family protein [Staphylococcus epidermidis NIH04008]
gi|394301787|gb|EJE45241.1| peptidase, S54 family [Staphylococcus epidermidis NIH051668]
Length = 486
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 84/152 (55%), Gaps = 5/152 (3%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F + +VGASG IFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGTIFGLIGSIFVIMYL 285
Query: 254 HRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
+N K+ + L ++ +V S +NI
Sbjct: 286 SKNF---NKKMIGQLLIALVVLIVFSLFMSNI 314
>gi|258443587|ref|ZP_05691926.1| rhomboid family protein [Staphylococcus aureus A8115]
gi|282893050|ref|ZP_06301284.1| peptidase [Staphylococcus aureus A8117]
gi|443635576|ref|ZP_21119704.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21236]
gi|257850993|gb|EEV74936.1| rhomboid family protein [Staphylococcus aureus A8115]
gi|282764368|gb|EFC04494.1| peptidase [Staphylococcus aureus A8117]
gi|443409217|gb|ELS67715.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21236]
Length = 487
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|418892279|ref|ZP_13446392.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1176]
gi|377730573|gb|EHT54640.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1176]
Length = 487
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|325847279|ref|ZP_08169997.1| peptidase, S54 family [Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|325480910|gb|EGC83959.1| peptidase, S54 family [Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 221
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 68/121 (56%), Gaps = 7/121 (5%)
Query: 132 QWTNILLAVNVLVYIAQFATQ-----DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
+ T IL+A+NV+V+I T + LL + A + +G++WRL F+H + H
Sbjct: 5 KMTRILMAINVIVFIFMTVTGGSENIENLLRFNAMSKIHVYQGEWWRLFCPIFIHIGVFH 64
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLV 244
L++N Y LNS+G T E + G + +L +Y + + + +Y F S + GAS +++GL
Sbjct: 65 LLMNMYFLNSVGDTFESLYGSKNFLIIYLLTGVMGNLFTYAFGEITSVSAGASTSLYGLF 124
Query: 245 G 245
G
Sbjct: 125 G 125
>gi|284043226|ref|YP_003393566.1| rhomboid family protein [Conexibacter woesei DSM 14684]
gi|283947447|gb|ADB50191.1| Rhomboid family protein [Conexibacter woesei DSM 14684]
Length = 274
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 77/136 (56%), Gaps = 16/136 (11%)
Query: 134 TNILLAVNVLVYIAQFATQDKL-----------LLWGAKINSLIDKGQFWRLATSAFLHA 182
T +L+A++VL Y+ + A+ ++ +LWG I + + WR+ TS FLHA
Sbjct: 62 TYVLIAISVLAYVGELASGGRINDAGGTLYENGVLWGPYIA---QRDEIWRMVTSGFLHA 118
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS-AMSYRFCNSPAVGASGAIF 241
++ H++ N + + +G +E + G R++ +YF++ + S A+ +P +GASGA F
Sbjct: 119 SLFHILFNMWFIWVLGRMLEPVLGHVRFVTLYFTALLCGSFAVLLLEPTAPTIGASGAAF 178
Query: 242 GLVGSFAVFIMRHRNI 257
GL+G+ A+ R R +
Sbjct: 179 GLLGA-AIVEARARGL 193
>gi|253733201|ref|ZP_04867366.1| S54 family peptidase [Staphylococcus aureus subsp. aureus TCH130]
gi|417897863|ref|ZP_12541789.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21259]
gi|253728741|gb|EES97470.1| S54 family peptidase [Staphylococcus aureus subsp. aureus TCH130]
gi|341849365|gb|EGS90508.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21259]
Length = 487
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|453068740|ref|ZP_21972014.1| hypothetical protein G418_08893 [Rhodococcus qingshengii BKS 20-40]
gi|452765301|gb|EME23561.1| hypothetical protein G418_08893 [Rhodococcus qingshengii BKS 20-40]
Length = 240
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 71/139 (51%), Gaps = 17/139 (12%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL--LWGAKI-------NSLIDKGQFWRLATSAFLHANI 184
T L+ +NVL ++A FA ++ G+ I L+ G ++RL S FLH I
Sbjct: 11 TYTLMGLNVLAFLATFAQSRSIMNNQVGSSIFANWALNPGLVASGDWFRLIGSGFLHFGI 70
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--------CNSPAVGA 236
HL VN Y+L +G E + G RY+G+Y S + SA F S GA
Sbjct: 71 LHLAVNMYALYILGRDTEIVMGRSRYIGIYLVSLLGGSASVMAFQPVFSSLTALSWTAGA 130
Query: 237 SGAIFGLVGSFAVFIMRHR 255
SGAIFG++G+ AV ++R R
Sbjct: 131 SGAIFGIMGAQAVLLLRLR 149
>gi|82751152|ref|YP_416893.1| hypothetical protein SAB1421c [Staphylococcus aureus RF122]
gi|82656683|emb|CAI81110.1| probable membrane protein [Staphylococcus aureus RF122]
Length = 487
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|148269479|ref|YP_001243939.1| rhomboid family protein [Thermotoga petrophila RKU-1]
gi|170288153|ref|YP_001738391.1| rhomboid family protein [Thermotoga sp. RQ2]
gi|281411803|ref|YP_003345882.1| Rhomboid family protein [Thermotoga naphthophila RKU-10]
gi|147735023|gb|ABQ46363.1| Rhomboid family protein [Thermotoga petrophila RKU-1]
gi|170175656|gb|ACB08708.1| Rhomboid family protein [Thermotoga sp. RQ2]
gi|281372906|gb|ADA66468.1| Rhomboid family protein [Thermotoga naphthophila RKU-10]
Length = 235
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 68/121 (56%), Gaps = 12/121 (9%)
Query: 137 LLAVNVLVYIAQ-----FATQDK------LLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
+L N +++ F+T+D LL +GA+ +D G ++RL T+ F+H I
Sbjct: 9 ILLFNAFIFVMMTFSGVFSTRDPVLQMLLLLRYGAQYGPRVDAGDWFRLITALFVHGGIL 68
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLV 244
H++ N Y+L G +E I G ++L YF + I + ++ F ++ +VGASGAIFGL+
Sbjct: 69 HILFNSYALYYFGLIVEDIYGTEKFLVGYFFTGIVGNLATHVFYHDTISVGASGAIFGLI 128
Query: 245 G 245
G
Sbjct: 129 G 129
>gi|387780641|ref|YP_005755439.1| hypothetical protein SARLGA251_14550 [Staphylococcus aureus subsp.
aureus LGA251]
gi|344177743|emb|CCC88222.1| putative membrane protein [Staphylococcus aureus subsp. aureus
LGA251]
Length = 487
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRH 254
M +
Sbjct: 282 MMY 284
>gi|384867478|ref|YP_005747674.1| rhomboid family protein [Staphylococcus aureus subsp. aureus TCH60]
gi|417901080|ref|ZP_12544957.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21266]
gi|418652792|ref|ZP_13214755.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-99]
gi|418955633|ref|ZP_13507570.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-189]
gi|312437983|gb|ADQ77054.1| rhomboid family protein [Staphylococcus aureus subsp. aureus TCH60]
gi|341846239|gb|EGS87436.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21266]
gi|375020960|gb|EHS14467.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-99]
gi|375370719|gb|EHS74517.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-189]
Length = 426
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 104 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 162
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 163 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 220
Query: 252 MRH 254
M +
Sbjct: 221 MMY 223
>gi|229491196|ref|ZP_04385024.1| rhomboid family protein [Rhodococcus erythropolis SK121]
gi|229321934|gb|EEN87727.1| rhomboid family protein [Rhodococcus erythropolis SK121]
Length = 240
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 71/139 (51%), Gaps = 17/139 (12%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL--LWGAKI-------NSLIDKGQFWRLATSAFLHANI 184
T L+ +NVL ++A FA ++ G+ I L+ G ++RL S FLH I
Sbjct: 11 TYTLMGLNVLAFLATFAQSRSIMNNQVGSSIFANWALNPGLVASGDWFRLIGSGFLHFGI 70
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--------CNSPAVGA 236
HL VN Y+L +G E + G RY+G+Y S + SA F S GA
Sbjct: 71 LHLAVNMYALYILGRDTEIVMGRSRYIGIYLVSLLGGSASVMAFQPVFSSLTALSWTAGA 130
Query: 237 SGAIFGLVGSFAVFIMRHR 255
SGAIFG++G+ AV ++R R
Sbjct: 131 SGAIFGIMGAQAVLLLRLR 149
>gi|436838188|ref|YP_007323404.1| Rhomboid protease gluP [Fibrella aestuarina BUZ 2]
gi|384069601|emb|CCH02811.1| Rhomboid protease gluP [Fibrella aestuarina BUZ 2]
Length = 251
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 9/159 (5%)
Query: 134 TNILLAVNVLVYIAQF--------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +N+LV++ T L+ WGA L GQ WRL T+ FLH +
Sbjct: 30 TPILMGINILVFVGMVLTGVNIMSPTGQDLVNWGANYTPLTYGGQPWRLLTACFLHIGLI 89
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLV 244
H++VN SL +G +E + G R+ Y + + S +S + + + GASGAIFG+
Sbjct: 90 HIVVNMMSLRVLGSQIEPLLGTSRFAVGYVVTGLTGSLVSLWWHDMVVSAGASGAIFGIE 149
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFA 283
G ++ + K L++ V+ N++ A
Sbjct: 150 GMLVGLLLTNLFDAAARKALLKNSLSVVGINLLIGAGIG 188
>gi|212697360|ref|ZP_03305488.1| hypothetical protein ANHYDRO_01930 [Anaerococcus hydrogenalis DSM
7454]
gi|212675552|gb|EEB35159.1| hypothetical protein ANHYDRO_01930 [Anaerococcus hydrogenalis DSM
7454]
Length = 221
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 68/121 (56%), Gaps = 7/121 (5%)
Query: 132 QWTNILLAVNVLVYIAQFATQ-----DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
+ T IL+A+NV+V+I T + LL + A + +G++WRL F+H + H
Sbjct: 5 KMTRILMAINVIVFIFMTVTGGSENIENLLRFNAMSKIHVYQGEWWRLFCPIFIHIGVFH 64
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLV 244
L++N Y LNS+G T E + G + +L +Y + + + +Y F S + GAS +++GL
Sbjct: 65 LLMNMYFLNSVGDTFESLYGSKNFLIIYLLTGVMGNLFTYAFGEITSVSAGASTSLYGLF 124
Query: 245 G 245
G
Sbjct: 125 G 125
>gi|445059551|ref|YP_007384955.1| hypothetical protein A284_05970 [Staphylococcus warneri SG1]
gi|443425608|gb|AGC90511.1| hypothetical protein A284_05970 [Staphylococcus warneri SG1]
Length = 484
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 73/121 (60%), Gaps = 3/121 (2%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
+N++L + +++Y +F+ KLL G ++ + G+++RL TS FLH N H+++N S
Sbjct: 166 SNVILWLCMILYFNRFSDI-KLLDVGGLVHFNVVHGEWYRLVTSMFLHFNFEHILMNMLS 224
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGS-FAVFI 251
L G +E + G + L +Y + I + +S F + +VGASGAIFGL+GS FA+
Sbjct: 225 LYIFGKIVESVLGSWKMLAIYLFAGIFGNFVSLSFNTTTISVGASGAIFGLIGSIFAILY 284
Query: 252 M 252
+
Sbjct: 285 L 285
>gi|389861756|ref|YP_006363995.1| Rhomboid Peptidase S54 [Modestobacter marinus]
gi|388483958|emb|CCH85490.1| Rhomboid Peptidase S54 [Modestobacter marinus]
Length = 246
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 26/168 (15%)
Query: 130 GRQW---TNILLAVNVLVYI-----AQFATQDKLLLWG-------AKINSLIDKGQFWRL 174
GR+W T L+ +NV +++ QD L + A++ + G +WR
Sbjct: 34 GRRWGPVTLTLIGINVAMFLLTAVLTGIGGQDPLQNYRNELFQDLAQVPVFVQIGDWWRP 93
Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-- 232
T+AFLH + HL +N SL G +E++ G RYL VY S IA A + + +P
Sbjct: 94 FTAAFLHYGVLHLGLNMLSLLVFGSELERLLGRGRYLVVYLVS-IAGGAAAIQLLGTPFG 152
Query: 233 -AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCS 279
GAS AI+GL+G+F V ++ K++L+ L ++ N+V S
Sbjct: 153 QVAGASTAIYGLMGAFGVVLVHQ-------KQDLRGLLVLLGINLVIS 193
>gi|433601853|ref|YP_007034222.1| membrane protein [Saccharothrix espanaensis DSM 44229]
gi|407879706|emb|CCH27349.1| membrane protein [Saccharothrix espanaensis DSM 44229]
Length = 286
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 79/162 (48%), Gaps = 28/162 (17%)
Query: 115 EGTSHLDTARTNLFIGRQW------TNILLAVNVLVYIAQFATQD-------------KL 155
EG S + RT F+G ++ T +L+ +NVL Y A A Q
Sbjct: 55 EGRSTVRRGRT--FVGAEFSPKLIATPVLIVLNVLAY-AVTAVQAGSVSNNAASPLFADF 111
Query: 156 LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
+LW I G++WRL TS FLH AHL +N +L +G +E G R+L +Y
Sbjct: 112 VLWPVGIF----YGEWWRLLTSGFLHYGPAHLGLNMIALYVLGRELEPTFGKIRFLALYL 167
Query: 216 SSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFAVFIMRHR 255
S + Y F N+P GASGA++GL+G+ V +++ +
Sbjct: 168 VSLLGGGVAVYLFGHVNTPVAGASGAVYGLMGAMLVAVLKLK 209
>gi|319654680|ref|ZP_08008759.1| hypothetical protein HMPREF1013_05381 [Bacillus sp. 2_A_57_CT2]
gi|317393596|gb|EFV74355.1| hypothetical protein HMPREF1013_05381 [Bacillus sp. 2_A_57_CT2]
Length = 241
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 69/128 (53%), Gaps = 4/128 (3%)
Query: 160 AKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
A +N I +G++WRL + LH+ H++ N +SL GP +E++ G R++ +Y ++
Sbjct: 47 AGVNLYIVQGEYWRLLSPIILHSGFPHVLFNSFSLVLFGPVLERMLGKTRFILLYITAGA 106
Query: 220 ASSAMSYRF--CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMV 277
A++ + VGASGAIFGL G FA I+ + +L +E Q + + I ++
Sbjct: 107 AANIATLLLEPLTYIHVGASGAIFGLFGYFAAIIVFRKELL--SRENSQIILTITIIGVI 164
Query: 278 CSAAFANI 285
+ NI
Sbjct: 165 MTFLQPNI 172
>gi|15240938|ref|NP_198667.1| rhomboid-related intramembrane serine protease-like protein
[Arabidopsis thaliana]
gi|145334671|ref|NP_001078681.1| rhomboid-related intramembrane serine protease-like protein
[Arabidopsis thaliana]
gi|10176819|dbj|BAB10141.1| unnamed protein product [Arabidopsis thaliana]
gi|46518449|gb|AAS99706.1| At5g38510 [Arabidopsis thaliana]
gi|110741692|dbj|BAE98792.1| hypothetical protein [Arabidopsis thaliana]
gi|332006944|gb|AED94327.1| rhomboid-related intramembrane serine protease-like protein
[Arabidopsis thaliana]
gi|332006945|gb|AED94328.1| rhomboid-related intramembrane serine protease-like protein
[Arabidopsis thaliana]
Length = 434
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 63/109 (57%)
Query: 156 LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
LL+GAKIN LI G++WRL T FLH+ I H+ ++ ++L + GP + + G + +Y
Sbjct: 216 LLYGAKINDLILAGEWWRLVTPMFLHSGIPHVALSSWALLTFGPKVCRDYGLFTFCLIYI 275
Query: 216 SSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEE 264
++ + MS+ P VG +G F L+G++ V +++ ++ + E
Sbjct: 276 LGGVSGNFMSFLHTADPTVGGTGPAFALIGAWLVDQNQNKEMIKSNEYE 324
>gi|429503970|ref|YP_007185154.1| rhomboid protease [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
gi|429485560|gb|AFZ89484.1| rhomboid protease [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
Length = 199
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 5/116 (4%)
Query: 155 LLLWGAKI---NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
+++W + N + G++WRL T FLHAN HL+ N SL P +E++ G R+L
Sbjct: 39 VMMWSDAVTGYNYGVSSGEWWRLVTPMFLHANFTHLLFNSMSLFLFAPPLEQMLGKVRFL 98
Query: 212 GVYFSSAIASSAMSY--RFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEEL 265
VY S I + +Y + VGASGAIFGL G + + + ++G + ++
Sbjct: 99 IVYIVSGIIGNIGTYLAEPLDYVHVGASGAIFGLFGVYVFLTVFRKELIGRDQSKM 154
>gi|226182622|dbj|BAH30726.1| conserved hypothetical membrane protein [Rhodococcus erythropolis
PR4]
Length = 266
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 71/139 (51%), Gaps = 17/139 (12%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL--LWGAKI-------NSLIDKGQFWRLATSAFLHANI 184
T L+ +NVL ++A FA ++ G+ I L+ G ++RL S FLH I
Sbjct: 37 TYTLMGLNVLAFLATFAQSRSIMNNQVGSSIFANWALNPGLVASGDWFRLIGSGFLHFGI 96
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--------CNSPAVGA 236
HL VN Y+L +G E + G RY+G+Y S + SA F S GA
Sbjct: 97 LHLAVNMYALYILGRDTEIVMGRSRYIGIYLVSLLGGSASVMAFQPVFSSLTALSWTAGA 156
Query: 237 SGAIFGLVGSFAVFIMRHR 255
SGAIFG++G+ AV ++R R
Sbjct: 157 SGAIFGIMGAQAVLLLRLR 175
>gi|15643350|ref|NP_228394.1| hypothetical protein TM0584 [Thermotoga maritima MSB8]
gi|418045242|ref|ZP_12683338.1| Rhomboid family protein [Thermotoga maritima MSB8]
gi|4981102|gb|AAD35669.1|AE001733_6 conserved hypothetical protein [Thermotoga maritima MSB8]
gi|351678324|gb|EHA61471.1| Rhomboid family protein [Thermotoga maritima MSB8]
Length = 235
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 7/104 (6%)
Query: 149 FATQDK------LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTME 202
F+T+D LL +GA+ +D G ++RL T+ F+H I H++ N Y+L G +E
Sbjct: 26 FSTRDPVLQMLLLLRYGAQYGPRVDAGDWFRLITALFVHGGILHILFNSYALYYFGLIVE 85
Query: 203 KICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVG 245
I G ++L YF + I + ++ F ++ +VGASGAIFGL+G
Sbjct: 86 DIYGTEKFLVGYFFTGIVGNLATHVFYHDTISVGASGAIFGLIG 129
>gi|403252324|ref|ZP_10918634.1| Rhomboid family protein [Thermotoga sp. EMP]
gi|402812337|gb|EJX26816.1| Rhomboid family protein [Thermotoga sp. EMP]
Length = 235
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 7/104 (6%)
Query: 149 FATQDK------LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTME 202
F+T+D LL +GA+ +D G ++RL T+ F+H I H++ N Y+L G +E
Sbjct: 26 FSTRDPVLQMLLLLRYGAQYGPRVDAGDWFRLITALFVHGGILHILFNSYALYYFGLIVE 85
Query: 203 KICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVG 245
I G ++L YF + I + ++ F ++ +VGASGAIFGL+G
Sbjct: 86 DIYGTEKFLVGYFFTGIVGNLATHVFYHDTISVGASGAIFGLIG 129
>gi|56962578|ref|YP_174304.1| hypothetical protein ABC0804 [Bacillus clausii KSM-K16]
gi|56908816|dbj|BAD63343.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
Length = 253
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 68/124 (54%), Gaps = 6/124 (4%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
G N+ I G++WRL T FLH + HL N ++L P +E + G R+++ +Y S
Sbjct: 45 GMGWNAAILAGEYWRLVTPIFLHGGLFHLFSNMFALLIFAPALEVMLGKRKFVTIYLISG 104
Query: 219 IASSAMSYRFCNSPA---VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFN 275
+ ++ + F SP+ VGASG+IFGL G F + ++++ + Q + +I+ +
Sbjct: 105 VLANVAT-LFLESPSYTHVGASGSIFGLFGVFLFMYLYRKDLM--DSQSGQTILPIIVIS 161
Query: 276 MVCS 279
++ +
Sbjct: 162 VIMT 165
>gi|418635278|ref|ZP_13197657.1| peptidase, S54 family [Staphylococcus lugdunensis VCU139]
gi|374842000|gb|EHS05452.1| peptidase, S54 family [Staphylococcus lugdunensis VCU139]
Length = 485
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 71/122 (58%), Gaps = 6/122 (4%)
Query: 137 LLAVNVLVYIAQFATQD-----KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
L+ +N++++++ + KLL G ++ + G+++RL TS FLH N H+++N
Sbjct: 162 LITINIVIWLSMILLLNRFSNIKLLDMGGLVHFNVVHGEWYRLITSMFLHFNFEHILMNM 221
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVF 250
SL G +E I GP + L +Y S + + +S F ++ + GASGAIFGL+G+ V
Sbjct: 222 LSLFIFGKIVEAIIGPMKMLILYIISGLFGNFLSLSFNTDTVSAGASGAIFGLIGAIIVM 281
Query: 251 IM 252
++
Sbjct: 282 MI 283
>gi|388508254|gb|AFK42193.1| unknown [Lotus japonicus]
Length = 199
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 60/105 (57%)
Query: 169 GQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF 228
G++WRL T FLHA I HL ++C++L S GP + K G + +Y ++ + S+
Sbjct: 3 GEWWRLVTPMFLHAGIFHLALSCWALLSFGPQVCKGYGSFTFFMIYILGGVSGNLTSFMH 62
Query: 229 CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVII 273
PAVG +G +F ++G++ ++ +++R+++ E +II
Sbjct: 63 TPDPAVGGTGPVFAVIGAWLMYQIQNRDVIANDASENLFQKAIII 107
>gi|403237491|ref|ZP_10916077.1| rhomboid protein membrane-associated serine peptidase [Bacillus sp.
10403023]
Length = 515
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 5/123 (4%)
Query: 133 WTNILLAVNVLVY-----IAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T IL+A+ ++++ + LL +GAK N I G++WR T LH HL
Sbjct: 183 FTYILIAIQLIMFAVLELYGGSTNTETLLKYGAKENFRILNGEWWRFFTPMILHIGFIHL 242
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
++N ++L +G +E++ G R+L +Y + S S+ F + + GASGAIFG G+
Sbjct: 243 LMNTFALYYLGTEVERLYGKSRFLMIYVFAGFLGSLASFVFNANISAGASGAIFGCFGAL 302
Query: 248 AVF 250
F
Sbjct: 303 LFF 305
>gi|385263597|ref|ZP_10041684.1| Rhomboid family protein [Bacillus sp. 5B6]
gi|385148093|gb|EIF12030.1| Rhomboid family protein [Bacillus sp. 5B6]
Length = 199
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 5/134 (3%)
Query: 137 LLAVNVLVYIAQFATQDKLLLWGAKI---NSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
+LA+ +++ +++W + N + G++WRL T FLHAN HL+ N S
Sbjct: 21 ILALQAFLWLFFSMPLHSVMMWSDAVTGYNYGVSSGEWWRLVTPMFLHANFTHLLFNSMS 80
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSY--RFCNSPAVGASGAIFGLVGSFAVFI 251
L P +E++ G R+L VY +S + + +Y + VGASGAIFGL G +
Sbjct: 81 LFLFAPPLEQMLGKVRFLIVYIASGLIGNIGTYLAEPLDYVHVGASGAIFGLFGVYVFLT 140
Query: 252 MRHRNILGGGKEEL 265
+ + ++G + ++
Sbjct: 141 VFRKELIGRDQSKM 154
>gi|418920630|ref|ZP_13474562.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC348]
gi|377764356|gb|EHT88209.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC348]
Length = 370
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 48 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 106
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 107 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 164
Query: 252 MRH 254
M +
Sbjct: 165 MMY 167
>gi|375090618|ref|ZP_09736932.1| hypothetical protein HMPREF9708_01322 [Facklamia languida CCUG
37842]
gi|374565379|gb|EHR36650.1| hypothetical protein HMPREF9708_01322 [Facklamia languida CCUG
37842]
Length = 228
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 82/153 (53%), Gaps = 8/153 (5%)
Query: 134 TNILLAVNVLVYIAQFATQ------DKLLLWGAKINS-LIDKGQFWRLATSAFLHANIAH 186
T L+A+NVLV+I T + L+ GAK N ++ +G+++RL T+AF+H H
Sbjct: 13 TYFLVAINVLVFIYMLMTFKTTTSFEALIETGAKSNPHIVYQGEWYRLVTAAFIHIGFEH 72
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
L+ N S+ IG +E++ G R G++ ++I + S+ F + + GAS IFGL +
Sbjct: 73 LLFNNLSIYFIGQDLERLMGHLRLFGLFMIASIGGNIFSFAFSEAISAGASTGIFGLFVA 132
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMVCS 279
+ + + G K+ + + +I+ N+V
Sbjct: 133 YIILAKMYPQSY-GLKKRAMNFSLLILLNIVTG 164
>gi|403238266|ref|ZP_10916852.1| S54 family peptidase [Bacillus sp. 10403023]
Length = 239
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 69/125 (55%), Gaps = 4/125 (3%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
N LI +G++WRL T F+H+ H++ N +SL GP +E + G ++ VY + +A++
Sbjct: 50 NFLISEGEYWRLVTPIFVHSGFGHMLFNSFSLVLFGPALESMLGKVKFTVVYLLTGVAAN 109
Query: 223 AMSYRF--CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSA 280
+Y VG+SGAIFGL G + ++ ++++ +L + +++ +V +
Sbjct: 110 LATYYIEPLEFAHVGSSGAIFGLFGIYLYMVVFRKDLINHMNAQL--ITTILVIGLVMTF 167
Query: 281 AFANI 285
+N+
Sbjct: 168 INSNV 172
>gi|330997596|ref|ZP_08321442.1| peptidase, S54 family [Paraprevotella xylaniphila YIT 11841]
gi|329570307|gb|EGG52042.1| peptidase, S54 family [Paraprevotella xylaniphila YIT 11841]
Length = 478
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 80/160 (50%), Gaps = 11/160 (6%)
Query: 136 ILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+LL N+LV+ T LL WGA L G +WR+ T F+H+ + HL
Sbjct: 63 LLLGCNILVFFVMCLTGVGVLEPDNISLLHWGANFGPLTLTGDYWRVWTCNFVHSGLIHL 122
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP--AVGASGAIFGLVG 245
++N Y+L +G +E + G R + VY + + SS FC++ +VGASGAIFGL G
Sbjct: 123 IMNVYALLFVGLFLEPMLGSLRVVMVYSLAGLYSSVAGL-FCHADWISVGASGAIFGLYG 181
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
+ ++ ++ K L + I++N++ N+
Sbjct: 182 ALFARLLFYKGQSSWRKILLIAIGGFILYNLLYGIGDNNV 221
>gi|407641198|ref|YP_006804957.1| putative membrane-bound rhomboid protease [Nocardia brasiliensis
ATCC 700358]
gi|407304082|gb|AFT97982.1| putative membrane-bound rhomboid protease [Nocardia brasiliensis
ATCC 700358]
Length = 235
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 67/133 (50%), Gaps = 11/133 (8%)
Query: 134 TNILLAVNVLVYIAQFA---------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T L+AVNV ++ A D L W ++ D GQ+WR+ S FLH
Sbjct: 21 TYALIAVNVAIFAVTAAQAQSLLENRASDLFLRWVLYPPAVAD-GQWWRVLGSGFLHYGP 79
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGL 243
HL++N ++L IG E + G RYL VY S + +A F +S GASGA++GL
Sbjct: 80 IHLLLNMFALYVIGRDAELVLGRLRYLSVYLVSLLGGAAAVMVFAQDSATAGASGAVYGL 139
Query: 244 VGSFAVFIMRHRN 256
G+ V ++R R
Sbjct: 140 FGAITVILIRLRQ 152
>gi|218190628|gb|EEC73055.1| hypothetical protein OsI_07010 [Oryza sativa Indica Group]
Length = 483
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 90/190 (47%), Gaps = 16/190 (8%)
Query: 134 TNILLAVNVLVYIAQFATQDK---------LLLWGAKINSLIDKGQFWRLATSAFLHANI 184
TN+L A+N+ V + + A+ + L++GAKIN LI G++WRL T LH+
Sbjct: 252 TNLLAAINIAVMLFEIASPVRNSDIENLSLPLMYGAKINDLILSGEWWRLLTPMCLHSGF 311
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
H+ + C+ L GP + + G +L +Y + + SY + V +G +F L+
Sbjct: 312 LHIALGCWVLLIFGPRVSRAYGQTTFLLMYILGGVCGNLTSYLHTSELTVCGTGPVFALI 371
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANIVKIESRHTLTGETC----- 299
G++ V+ ++++ + E V+ + S ++ +I++ L C
Sbjct: 372 GAWLVYQSQNKDAIDKNVSETMFSQAVVATTL--SFLLSSFGRIDNWTHLGATICGLLFG 429
Query: 300 YFIDPSKQMN 309
Y PS Q++
Sbjct: 430 YLTCPSVQVD 439
>gi|404443258|ref|ZP_11008430.1| rhomboid family protein [Mycobacterium vaccae ATCC 25954]
gi|403655930|gb|EJZ10759.1| rhomboid family protein [Mycobacterium vaccae ATCC 25954]
Length = 289
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 66/117 (56%), Gaps = 8/117 (6%)
Query: 134 TNILLAVNVLVYIAQFATQD---KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T +L+AVN++++ Q A+ + L LW G+ +RL TSAFLH ++ H+ N
Sbjct: 80 TYVLIAVNLVMFALQMASPNLERALGLWPPAA----ADGELYRLVTSAFLHFSVTHIAFN 135
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGS 246
+L +GP +E G R++ +Y SA+ S + Y N+ GASGA+FGL G+
Sbjct: 136 MLALYFVGPPLEHALGRLRFVALYLLSALGGSVLVYLLTFNALTAGASGAVFGLFGA 192
>gi|297582849|ref|YP_003698629.1| rhomboid family protein [Bacillus selenitireducens MLS10]
gi|297141306|gb|ADH98063.1| Rhomboid family protein [Bacillus selenitireducens MLS10]
Length = 255
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 68/127 (53%), Gaps = 2/127 (1%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
+I L + VY F +++ G N I G++WRL T FLH + H+M N ++
Sbjct: 22 ISICLFFYIWVYWFGFLGGNEIFALGVGWNFAIAMGEYWRLVTPIFLHGGLMHVMFNSFA 81
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFAVFI 251
L GP +E G R++ ++ +A+ ++ +++ N VGASGAI+GL G + +
Sbjct: 82 LFLFGPWLEAKLGISRFVMLFLGTAVIANIVTFLLQGPNYSHVGASGAIYGLFGVYLYIV 141
Query: 252 MRHRNIL 258
+ ++++
Sbjct: 142 LLRKDLM 148
>gi|392955180|ref|ZP_10320725.1| hypothetical protein A374_00560 [Bacillus macauensis ZFHKF-1]
gi|391878845|gb|EIT87420.1| hypothetical protein A374_00560 [Bacillus macauensis ZFHKF-1]
Length = 198
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 74/147 (50%), Gaps = 6/147 (4%)
Query: 137 LLAVNVLVYIAQFATQDKLLLWGAKI--NSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
+LA+ ++VY+ T ++ L I N I +G++WRL T H HL+ N +SL
Sbjct: 21 ILAIQLIVYVLMTFTPLEVELSTTFIGYNEAISQGEYWRLITPLITHIEFPHLLFNSFSL 80
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFIM 252
GP +E++ G ++ YF S I S + N +GAS AIFGL G + +
Sbjct: 81 FIFGPLLERLLGKGLFIISYFGSGILSHLLLLYLLPENYAYLGASSAIFGLYGVYTYLLF 140
Query: 253 RHRNILGGGKEELQHLAKVIIFNMVCS 279
++IL G E Q L +I+ ++ S
Sbjct: 141 FKKHIL--GTEGRQLLLPLIVIGLILS 165
>gi|238028881|ref|YP_002913112.1| Rhomboid-like protein [Burkholderia glumae BGR1]
gi|237878075|gb|ACR30408.1| Rhomboid-like protein [Burkholderia glumae BGR1]
Length = 542
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 9/132 (6%)
Query: 137 LLAVNVLVYIAQFATQ--------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
L+AVN+L+++A + ++ WGA +G +WRL T+ FLH + L
Sbjct: 162 LIAVNLLLFLAMAMSGVSALRPDVPAMIRWGANFGPDTLEGDWWRLLTAPFLHLGVFDLG 221
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
VN L +GP E+ G R L ++ F+ +A A + + GASGAIFGL G+
Sbjct: 222 VNLLVLARVGPLAERGYGGPRLLALFLFAGVMAGMASLLQDPMQCSAGASGAIFGLFGAL 281
Query: 248 AVFIMRHRNILG 259
A +RHR G
Sbjct: 282 AALRLRHRRAPG 293
>gi|145221663|ref|YP_001132341.1| rhomboid family protein [Mycobacterium gilvum PYR-GCK]
gi|145214149|gb|ABP43553.1| Rhomboid family protein [Mycobacterium gilvum PYR-GCK]
Length = 279
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 17/148 (11%)
Query: 134 TNILLAVNVLVYIAQFAT---QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+ +N+L + Q A+ Q LW + + G+ +RL TSAFLH + HL N
Sbjct: 70 TYALIGINLLAFALQMASPGLQRAFGLW----SPAVADGEMYRLLTSAFLHFGLTHLAFN 125
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAV 249
+L +GP +E G R++ +Y SA+ S + Y N+ GASGA+FGL G A
Sbjct: 126 MLALYFVGPPLEAALGRARFITLYLVSALGGSVLVYLLTLNALTAGASGAVFGLFG--AT 183
Query: 250 FIM-RHRNILGGGKEELQHLAKVIIFNM 276
F++ R N+ +++ + +I+ N+
Sbjct: 184 FVVGRKLNM------DVRSVMAIIVLNL 205
>gi|407980349|ref|ZP_11161140.1| peptidase [Bacillus sp. HYC-10]
gi|407412941|gb|EKF34690.1| peptidase [Bacillus sp. HYC-10]
Length = 512
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 75/130 (57%), Gaps = 5/130 (3%)
Query: 133 WTNILLAVNVLVYI-----AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T +L+AV V++++ L +GAK N LI +G++WRL T FLH + HL
Sbjct: 184 FTYLLIAVQVVMFLLLELSGGSTNTATLTAFGAKNNVLILEGEWWRLVTPMFLHIGLTHL 243
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
+ N ++L S+G +E+I G R+L +Y S I S S+ F + A GASGAIFG +G+
Sbjct: 244 LFNTFALWSVGAAVERIYGSGRFLLIYLISGIFGSIASFVFNTAIAAGASGAIFGCLGAL 303
Query: 248 AVFIMRHRNI 257
+ +R +
Sbjct: 304 LYLAISNRKL 313
>gi|295837743|ref|ZP_06824676.1| rhomboid family protein [Streptomyces sp. SPB74]
gi|295826650|gb|EFG64961.1| rhomboid family protein [Streptomyces sp. SPB74]
Length = 338
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 87/167 (52%), Gaps = 19/167 (11%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKL-----LLWGAKINSL-----IDKGQFWRLATSAFL 180
R T +L+A+N+ V++ A D L+ A+ S + +G+++RL T+ FL
Sbjct: 125 RLITKVLIALNLAVFVLVKAAPDSARLLDDLVMVARFPSYPQPIGVAEGEWYRLLTATFL 184
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN--SPAVGASG 238
H + H+ +N SL +G +E + G R+L +Y + + S S+ F + ++GASG
Sbjct: 185 HEEVWHIGLNMLSLWMLGGPIEALLGRARFLTLYLLAGVGGSVASFLFADPLGASLGASG 244
Query: 239 AIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
AIFGL G+ V ++R R + + +++ N++ + ++ I
Sbjct: 245 AIFGLFGATGVLVLRVR-------ADFRPFVALLVINLIITFGWSGI 284
>gi|357388451|ref|YP_004903290.1| putative peptidase S54 family protein [Kitasatospora setae KM-6054]
gi|311894926|dbj|BAJ27334.1| putative peptidase S54 family protein [Kitasatospora setae KM-6054]
Length = 310
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 94/202 (46%), Gaps = 33/202 (16%)
Query: 111 NSGHEGTSHLDTARTNLFIGRQW-TNILLAVNVLVYIAQFA---TQDKLLLWGAKIN--- 163
SG + TA R + T +L+A+NV Y+ + T D+ + G+ +
Sbjct: 58 KSGRQNVRQARTAFGGRITSRPYATIVLIALNVAAYVVELVRPETVDRFAVLGSGVLPPP 117
Query: 164 ------------SLIDKGQFWRLATSAFLH-------ANIAHLMVNCYSLNSIGPTMEKI 204
S I G++ RL T AFLH I H++ N Y L ++G +E
Sbjct: 118 ADYDPATYVPHLSGIAHGEWERLITGAFLHLGPTEWPMGILHIVFNMYWLWNLGRVVEDR 177
Query: 205 CGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRH-RNILGGGK 262
G R+L +Y SA+ SSA++Y N+ A+GASGA+FGL G + V R + LGG
Sbjct: 178 LGVLRFLALYLLSALGSSALTYWIAPNTLALGASGAVFGLAGGYWVLSRRQGYDPLGG-- 235
Query: 263 EELQHLAKVIIFNMVCSAAFAN 284
+ ++ M SA FA+
Sbjct: 236 ---NQMMVTLVLWMALSAGFAS 254
>gi|221502248|gb|EEE27986.1| peptidase, S54 family protein [Toxoplasma gondii VEG]
Length = 283
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 61/119 (51%), Gaps = 13/119 (10%)
Query: 140 VNVLVYIAQFA-----------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
V + VYIA A T L+++GA I LI G+ WRL FLH N+ H++
Sbjct: 68 VQIAVYIASLAAGLAPNEILAPTPQTLVMFGANIPELIRVGEIWRLICPLFLHLNLFHIL 127
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSPAVGASGAIFGLVG 245
+N + IG TME+ G + L VYF + ++ +S FC GAS A+F L+G
Sbjct: 128 MNLWVQIRIGLTMEEKYGWKMLLAVYFGVGVLANMISAAVLFCGQMKAGASTAVFALIG 186
>gi|74786305|sp|Q695T9.1|RHBL2_TOXGO RecName: Full=Rhomboid-like protease 2
gi|47500377|gb|AAT29066.1| rhomboid-like protease 2 [Toxoplasma gondii]
Length = 283
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 61/119 (51%), Gaps = 13/119 (10%)
Query: 140 VNVLVYIAQFA-----------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
V + VYIA A T L+++GA I LI G+ WRL FLH N+ H++
Sbjct: 68 VQIAVYIASLAAGLAPNEILAPTPQTLVMFGANIPELIRVGEIWRLICPLFLHLNLFHIL 127
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSPAVGASGAIFGLVG 245
+N + IG TME+ G + L VYF + ++ +S FC GAS A+F L+G
Sbjct: 128 MNLWVQIRIGLTMEEKYGWKMLLAVYFGVGVLANMISAAVLFCGQMKAGASTAVFALIG 186
>gi|218679679|ref|ZP_03527576.1| hypothetical protein RetlC8_12631 [Rhizobium etli CIAT 894]
Length = 376
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 73/151 (48%), Gaps = 19/151 (12%)
Query: 120 LDTARTNLFIGRQWTNILLAVNVLVYIAQFA------------TQDKLLLWGAKINSLID 167
D AR +F T LLAV V VY + A + L+L G S+++
Sbjct: 174 FDGARYPVF-----TYALLAVLVAVYAGELAFGVEASRAGSPSIRTLLVLGGTFRPSIVE 228
Query: 168 KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYR 227
++WRL T+ F+HA I HL NC+ L G E++ G R + ++F+SA+ S S
Sbjct: 229 GAEWWRLFTAPFMHAGIVHLASNCFCLWMAGMLFERLIGWRWFAAIFFASALGGSIASVW 288
Query: 228 F--CNSPAVGASGAIFGLVGSFAVFIMRHRN 256
N+ VGASG I GL + +R R+
Sbjct: 289 INDVNTVGVGASGGIVGLFAAVIAGSIRFRS 319
>gi|417003054|ref|ZP_11942140.1| peptidase, S54 family [Anaerococcus prevotii ACS-065-V-Col13]
gi|325478800|gb|EGC81910.1| peptidase, S54 family [Anaerococcus prevotii ACS-065-V-Col13]
Length = 227
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 7/119 (5%)
Query: 134 TNILLAVNVLVYIAQFATQ-----DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +L+ VN+ V+I T L+ +GA + L+ GQ+WR+ ++AF+H H+M
Sbjct: 14 TLVLMIVNIAVFILMSLTGGSENISNLVRYGAMVKPLVHDGQWWRILSAAFIHIGFFHIM 73
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVG 245
N Y L +IGP E++ G +L +Y + + + +Y F + V GAS +++G+ G
Sbjct: 74 FNMYFLYNIGPLFERLYGSINFLIIYLLAGVMGNLFTYAFGDVSTVSAGASTSLYGMFG 132
>gi|239989111|ref|ZP_04709775.1| hypothetical protein SrosN1_17547 [Streptomyces roseosporus NRRL
11379]
gi|291446112|ref|ZP_06585502.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
gi|291349059|gb|EFE75963.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
Length = 300
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 71/136 (52%), Gaps = 13/136 (9%)
Query: 131 RQWTNILLAVNV----LVYIAQFATQDKLLLWGAKINSL-------IDKGQFWRLATSAF 179
R T ILL++N+ LV + D LL A S + +GQ++RL TS F
Sbjct: 86 RLVTKILLSINLAVFLLVTVRPGLVGDLTLLGRAWDPSPPPGSIEGVAEGQWYRLVTSMF 145
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGAS 237
LH + H+ N L +G +E G RYL +Y S A SA++Y N P++GAS
Sbjct: 146 LHQELMHIGFNMLGLWWLGGQLEAALGRSRYLALYLLSGFAGSALTYLIAAQNQPSLGAS 205
Query: 238 GAIFGLVGSFAVFIMR 253
GA++GL G+ AV + R
Sbjct: 206 GAVYGLFGATAVLMRR 221
>gi|315446599|ref|YP_004079478.1| hypothetical protein Mspyr1_51170 [Mycobacterium gilvum Spyr1]
gi|315264902|gb|ADU01644.1| uncharacterized membrane protein [Mycobacterium gilvum Spyr1]
Length = 279
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 17/148 (11%)
Query: 134 TNILLAVNVLVYIAQFAT---QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+ +N+L + Q A+ Q LW + + G+ +RL TSAFLH + HL N
Sbjct: 70 TYALIGINLLAFALQMASPGLQRAFGLW----SPAVADGEMYRLLTSAFLHFGLTHLAFN 125
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAV 249
+L +GP +E G R++ +Y SA+ S + Y N+ GASGA+FGL G A
Sbjct: 126 MLALYFVGPPLEAALGRARFVTLYLVSALGGSVLVYLLTFNALTAGASGAVFGLFG--AT 183
Query: 250 FIM-RHRNILGGGKEELQHLAKVIIFNM 276
F++ R N+ +++ + +I+ N+
Sbjct: 184 FVVGRKLNM------DVRSVMAIIVLNL 205
>gi|444429847|ref|ZP_21225028.1| rhomboid family protein [Gordonia soli NBRC 108243]
gi|443889267|dbj|GAC66749.1| rhomboid family protein [Gordonia soli NBRC 108243]
Length = 268
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 9/131 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKI-------NSLIDKGQFWRLATSAFLHANIAH 186
T L+A+NV+V+ A L + + + I GQ+WRL TS FLH ++ H
Sbjct: 44 TYALIAINVVVFAICIAEAGGLQVLNSPLFLDWSLYKPAIADGQYWRLFTSGFLHLSVIH 103
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLV 244
+ N +L +G +E G RY+ VY +S SA F + AV GASGAI+GL+
Sbjct: 104 IAGNMLALYILGRDLELALGIPRYVAVYVTSLFGGSAFVMLFESDTAVTAGASGAIYGLM 163
Query: 245 GSFAVFIMRHR 255
G+ V +++ R
Sbjct: 164 GAILVVLLKAR 174
>gi|330718407|ref|ZP_08313007.1| membrane-associated serine protease [Leuconostoc fallax KCTC 3537]
Length = 229
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 72/131 (54%), Gaps = 9/131 (6%)
Query: 134 TNILLAVNVLVYIAQFA-----TQDK--LLLWGAKINSLID-KGQFWRLATSAFLHANIA 185
T ILL +L+Y+ + TQ+ L+ GAK I + ++WRL T FLHA +
Sbjct: 17 TTILLFFTILIYLVEVVLSGANTQNGRFLVEMGAKWGPYIQYQHEYWRLLTPIFLHAGMM 76
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLV 244
H+++N +L IGP E+ G R+YL +Y + + +SY F S +VGAS ++F L
Sbjct: 77 HIIMNMITLWFIGPLAERYFGSRKYLLLYLFGGVMGNILSYLFSPLSISVGASSSLFALF 136
Query: 245 GSFAVFIMRHR 255
G ++ ++ +
Sbjct: 137 GGLLIYSIQFK 147
>gi|67925260|ref|ZP_00518623.1| Rhomboid-like protein [Crocosphaera watsonii WH 8501]
gi|67852903|gb|EAM48299.1| Rhomboid-like protein [Crocosphaera watsonii WH 8501]
Length = 193
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 66/131 (50%), Gaps = 11/131 (8%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+ +N LV++ Q + L GA + ++ +GQFWRL TS FLH H
Sbjct: 2 TLFLIILNGLVFVTQLRLGGSENIETLYELGALVPVVVWEGQFWRLITSNFLHYGWGHFS 61
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS-SAMSYRF-----CNSPAVGASGAIFG 242
+N +L IG +EKI Y+ +YF S I S SA SY + VGAS ++ G
Sbjct: 62 MNMLALYFIGNLVEKISNKYNYITIYFLSGIGSMSAFSYLAHYTGKLDYILVGASASVMG 121
Query: 243 LVGSFAVFIMR 253
LVGS +R
Sbjct: 122 LVGSLTAIFLR 132
>gi|377564810|ref|ZP_09794121.1| rhomboid family protein [Gordonia sputi NBRC 100414]
gi|377527964|dbj|GAB39286.1| rhomboid family protein [Gordonia sputi NBRC 100414]
Length = 234
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 72/131 (54%), Gaps = 9/131 (6%)
Query: 134 TNILLAVNVLVY---IAQFATQDK----LLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T L+AVNV+++ + Q + D L G + + + G++WRL T+ FLH + H
Sbjct: 14 TYALIAVNVVIFALCVIQAKSFDAGLAPLFQHGDLVRADVANGEYWRLLTAGFLHFTVMH 73
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA--MSYRFCNSPAVGASGAIFGLV 244
+ +N SL +G +E G R+L VYF + SA M + N + GASGAI+GL+
Sbjct: 74 IALNMISLYILGRDLETALGHSRFLMVYFIALFGGSAAVMLFEAGNVRSAGASGAIYGLM 133
Query: 245 GSFAVFIMRHR 255
G+ V +++ R
Sbjct: 134 GAMLVIVVKAR 144
>gi|187735290|ref|YP_001877402.1| rhomboid family protein [Akkermansia muciniphila ATCC BAA-835]
gi|187425342|gb|ACD04621.1| Rhomboid family protein [Akkermansia muciniphila ATCC BAA-835]
Length = 291
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 30/157 (19%)
Query: 121 DTARTNLFIGRQWTNI--LLAVNVLVYIAQFATQ-------------DKLLLWGAKIN-S 164
DT R +LF R + L+ +NV+++I F Q D + L+GA +
Sbjct: 10 DTVRNHLFDQRSAVMVHWLILLNVVIFILGFFFQVDIPRNIYPPVHLDLIQLYGAYSEYT 69
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
+G+ WRL T FLHAN+ H+M N +L GP +E+ G R+L Y +A++
Sbjct: 70 CFHEGELWRLLTYQFLHANLGHIMFNMIALWFFGPVVEERFGHWRFLLYYLFCGVAAALF 129
Query: 225 S------------YRFCNSPAVGASGAIFGLVGSFAV 249
S +RF P VGASG+I+G++ + AV
Sbjct: 130 SSLLGYMGFFDPEWRFI--PMVGASGSIYGIMAACAV 164
>gi|239637639|ref|ZP_04678611.1| rhomboid family protein [Staphylococcus warneri L37603]
gi|239596857|gb|EEQ79382.1| rhomboid family protein [Staphylococcus warneri L37603]
Length = 484
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 72/121 (59%), Gaps = 3/121 (2%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
+N+ L + +++Y +F+ KLL G ++ + G+++RL TS FLH N H+++N S
Sbjct: 166 SNVALWLCMILYFNRFS-DIKLLDVGGLVHFNVVHGEWYRLVTSMFLHYNFEHILMNMLS 224
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGS-FAVFI 251
L G +E + G + L +Y + I + +S F + +VGASGAIFGL+GS FA+
Sbjct: 225 LYIFGKIVESVLGSWKMLAIYLFAGIFGNFVSLSFNTTTISVGASGAIFGLIGSIFAILY 284
Query: 252 M 252
+
Sbjct: 285 L 285
>gi|194017686|ref|ZP_03056296.1| S54 family peptidase [Bacillus pumilus ATCC 7061]
gi|194010586|gb|EDW20158.1| S54 family peptidase [Bacillus pumilus ATCC 7061]
Length = 512
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 62/103 (60%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L +GAK N LI G++WRL T FLH + HL+ N ++L S+G +EKI G R+L +Y
Sbjct: 211 LTAFGAKNNGLILDGEWWRLITPMFLHIGLTHLLFNTFALWSVGAAVEKIYGSWRFLLIY 270
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
F S S S+ F + A GASGAIFG +G+ + +R +
Sbjct: 271 FISGTFGSIASFVFNTAIAAGASGAIFGCLGALLYLAISNRKL 313
>gi|409356388|ref|ZP_11234775.1| putative membrane-bound rhomboid protease [Dietzia alimentaria 72]
Length = 244
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 69/134 (51%), Gaps = 14/134 (10%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLID-----------KGQFWRLATSAFLHA 182
T L+A N+ VY+A L + ++L + + ++WRL TSAF H
Sbjct: 21 TAWLIAANLAVYVATVVQARSFL--DNRASALFEFTALYPPLVAFRDEWWRLLTSAFQHF 78
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
HL++N Y L +G +E+ G RYL +Y SA+ S F N+ GASGAIF
Sbjct: 79 GPMHLLLNMYMLWLLGIGIERSVGHARYLAMYLVSALGGSVAVMFFSQNALTAGASGAIF 138
Query: 242 GLVGSFAVFIMRHR 255
GL+G++A+ M R
Sbjct: 139 GLMGAYAIVAMTMR 152
>gi|168699238|ref|ZP_02731515.1| Rhomboid-like protein [Gemmata obscuriglobus UQM 2246]
Length = 418
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 13/134 (9%)
Query: 134 TNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T +L+A+N++++ A+ +LL WGA G++WR T F+H I
Sbjct: 76 TRVLVAINLVIFGLMGASGLSLNQPSPAELLKWGADFGPNTLNGEWWRALTCMFVHIGIL 135
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV---GASGAIFG 242
H+++N + L++ GP +E++ G +L Y S + S S +P V GASGA+FG
Sbjct: 136 HILMNMWVLSATGPLVERMLGNAGFLVAYLVSGLGGSLASLWL--NPGVVSAGASGAVFG 193
Query: 243 LVGSFAVFIMRHRN 256
+ G+ + R R
Sbjct: 194 IYGALLGLLQRQRT 207
>gi|307312628|ref|ZP_07592260.1| Rhomboid family protein [Escherichia coli W]
gi|417606768|ref|ZP_12257294.1| rhomboid family protein [Escherichia coli STEC_DG131-3]
gi|306907330|gb|EFN37835.1| Rhomboid family protein [Escherichia coli W]
gi|345364756|gb|EGW96877.1| rhomboid family protein [Escherichia coli STEC_DG131-3]
Length = 265
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G +E+I G R L V+ S + +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGGVVERILGKWRLLIVWLFSGVFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|163815124|ref|ZP_02206505.1| hypothetical protein COPEUT_01280 [Coprococcus eutactus ATCC 27759]
gi|158449533|gb|EDP26528.1| peptidase, S54 family [Coprococcus eutactus ATCC 27759]
Length = 333
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 78/147 (53%), Gaps = 12/147 (8%)
Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
T I L +N+LVY+A + Q L + ++ +K Q++R TS F H I HL+ N
Sbjct: 148 TPIFLLMNILVYLACVYIYQPTEL--AVNVYAISEKRQYYRFLTSMFTHFGITHLLGNMV 205
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYR--FCNSP---AVGASGAIFGLVGSF 247
L ++G +E I G Y+ VY + +A++ SY FCN + GASGAIFGL+G
Sbjct: 206 ILIALGARIENIIGRLNYVIVYIVTGLAAAFASYINFFCNDIYDYSAGASGAIFGLLGVL 265
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIF 274
V ++ G ++L + +I+F
Sbjct: 266 VVIAFYNK----GRVKDLSLMNMIILF 288
>gi|256850860|ref|ZP_05556249.1| membrane-associated serine protease [Lactobacillus jensenii
27-2-CHN]
gi|260661071|ref|ZP_05861985.1| membrane-associated serine protease [Lactobacillus jensenii
115-3-CHN]
gi|256615922|gb|EEU21110.1| membrane-associated serine protease [Lactobacillus jensenii
27-2-CHN]
gi|260548008|gb|EEX23984.1| membrane-associated serine protease [Lactobacillus jensenii
115-3-CHN]
Length = 215
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 69/116 (59%), Gaps = 12/116 (10%)
Query: 143 LVYIAQFA-------TQDKLLLW--GAKIN-SLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+V +A FA ++D +L+ GA+ N ++I GQ+WRL T+ FLH + HL+VNC
Sbjct: 7 VVLVAMFALETFNGGSEDSAVLFKLGAQFNPAVIILGQWWRLFTAQFLHIGLLHLVVNCV 66
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGS 246
+L +G +E + G R+L +Y + + + M+ F + AV GAS A+FGL G+
Sbjct: 67 TLFYMGQYLEPMLGHVRFLIIYLLAGVGGNLMTMAFGSDNAVSAGASTALFGLFGA 122
>gi|312137531|ref|YP_004004867.1| serine peptidase [Rhodococcus equi 103S]
gi|311886870|emb|CBH46178.1| putative serine peptidase [Rhodococcus equi 103S]
Length = 321
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 75/147 (51%), Gaps = 27/147 (18%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL----------------------WGAKINSLIDKGQF 171
T +L+A+NVL++ A A Q K L+ W +S + +G+
Sbjct: 86 TYVLIALNVLIF-AITALQAKSLMDNGGGVVNRFTGVATFDSPLFGWMVLDSSAVAQGEL 144
Query: 172 WRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS 231
+R+ S FLH + HL VN ++L +G E + G RYL VY S + SA + F S
Sbjct: 145 FRVIGSGFLHFGLIHLAVNMFALWVLGRDTEIVLGRSRYLAVYLISLLGGSASALMF-ES 203
Query: 232 P---AVGASGAIFGLVGSFAVFIMRHR 255
P GASGAIFG++G+ AV ++R R
Sbjct: 204 PFAFTAGASGAIFGIMGAQAVLLLRMR 230
>gi|271961709|ref|YP_003335905.1| rhomboid-like protein [Streptosporangium roseum DSM 43021]
gi|270504884|gb|ACZ83162.1| rhomboid-like protein [Streptosporangium roseum DSM 43021]
Length = 291
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 72/129 (55%), Gaps = 10/129 (7%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA-------H 186
T LL VN+L Y A+ + + + + +G++WRL T AFLH ++ H
Sbjct: 79 TWALLIVNILAYAAESLSPSVVSAFQMSSGHVAFRGEWWRLITGAFLHMPLSAGGFALTH 138
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
++ N ++L +IGP +E+ G R+L +Y SA+ S Y F AVGASGAI+G+ G
Sbjct: 139 ILFNMWALYAIGPELERRLGSLRFLVLYLLSALGGSVAIYLF-GIAAVGASGAIYGMFG- 196
Query: 247 FAVFIMRHR 255
A+F++ +
Sbjct: 197 -ALFVVSKK 204
>gi|88800271|ref|ZP_01115838.1| hypothetical protein MED297_14685 [Reinekea blandensis MED297]
gi|88776986|gb|EAR08194.1| hypothetical protein MED297_14685 [Reinekea sp. MED297]
Length = 209
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 83/158 (52%), Gaps = 13/158 (8%)
Query: 130 GRQWTNILLAVNVLVYIA---------QFATQDKLLLW-GAKINSLIDKGQFWRLATSAF 179
G + + +L+ + LV++A Q++ Q L W GA + +D GQ+WRL TS F
Sbjct: 9 GYKISPLLVLIYGLVFVAMSIMNLSFTQYSIQS--LYWLGANFSPWVDAGQWWRLGTSIF 66
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASG 238
+H + HL+ N S +G +E + G ++ V+ ++ + +S SY F + GASG
Sbjct: 67 VHFGLMHLVFNSVSTLFLGRFLEPLLGHVAFIVVFLTTGLCASMASYVFNKEVYSAGASG 126
Query: 239 AIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNM 276
A+FGL G F V ++ + E L+ + +++ N+
Sbjct: 127 AVFGLFGLFIVLVLSNLVRPEVRNEWLKSIGVILVINL 164
>gi|256847477|ref|ZP_05552923.1| rhomboid family protein [Lactobacillus coleohominis 101-4-CHN]
gi|256716141|gb|EEU31116.1| rhomboid family protein [Lactobacillus coleohominis 101-4-CHN]
Length = 220
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
GAK LI +GQ+WRL T+ FLH I HL++N +L +G +E + G R L +Y S
Sbjct: 41 GAKDTPLILQGQWWRLLTAGFLHIGIQHLVINMLTLYFLGMYVETLFGHWRMLVIYLVSV 100
Query: 219 IASS--AMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRN 256
++ + +M + NS + GAS +FGL G+F + + R+
Sbjct: 101 VSGNLFSMVMQPVNSVSAGASTGLFGLFGAFIMLGIVFRD 140
>gi|297205734|ref|ZP_06923129.1| S54 family peptidase [Lactobacillus jensenii JV-V16]
gi|297148860|gb|EFH29158.1| S54 family peptidase [Lactobacillus jensenii JV-V16]
Length = 229
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 69/116 (59%), Gaps = 12/116 (10%)
Query: 143 LVYIAQFA-------TQDKLLLW--GAKIN-SLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+V +A FA ++D +L+ GA+ N ++I GQ+WRL T+ FLH + HL+VNC
Sbjct: 21 VVLVAMFALETFNGGSEDSAVLFKLGAQFNPAVIILGQWWRLFTAQFLHIGLLHLVVNCV 80
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGS 246
+L +G +E + G R+L +Y + + + M+ F + AV GAS A+FGL G+
Sbjct: 81 TLFYMGQYLEPMLGHVRFLIIYLLAGVGGNLMTLAFGSDNAVSAGASTALFGLFGA 136
>gi|345022776|ref|ZP_08786389.1| hypothetical protein OTW25_15910 [Ornithinibacillus scapharcae
TW25]
Length = 254
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 62/110 (56%), Gaps = 5/110 (4%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
++L G + +I +G++WR T FLH + H++ N +SL GP +E++ G +L
Sbjct: 42 ERLYDLGVGHHYMIHQGEYWRFITPIFLHGGLMHMLFNSFSLVLFGPALERMIGKSMFLI 101
Query: 213 VYFSSAIASSAMSYRFCNS----PAVGASGAIFGLVGSFAVFIMRHRNIL 258
Y + + ++ ++ F N P VGASGAIFGL G + ++ ++++
Sbjct: 102 AYLGAGVLANITTF-FINPSFMFPHVGASGAIFGLFGIYIFMVVFRKSLI 150
>gi|222099054|ref|YP_002533622.1| Rhomboid family protein precursor [Thermotoga neapolitana DSM 4359]
gi|221571444|gb|ACM22256.1| Rhomboid family protein precursor [Thermotoga neapolitana DSM 4359]
Length = 236
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
LL +GA+ +D G ++RL T+ F+H I H++ N Y+L G +E I G ++L Y
Sbjct: 39 LLRYGAQYGPRVDAGDWFRLITALFVHGGILHILFNSYALYYFGLIVEDIYGSEKFLFSY 98
Query: 215 FSSAIASSAMSYRFC-NSPAVGASGAIFGLVG 245
F + + + ++ F ++ +VGASGAIFGL+G
Sbjct: 99 FFTGVVGNIATHIFYHDTISVGASGAIFGLIG 130
>gi|410452631|ref|ZP_11306595.1| hypothetical protein BABA_02602 [Bacillus bataviensis LMG 21833]
gi|409934113|gb|EKN71029.1| hypothetical protein BABA_02602 [Bacillus bataviensis LMG 21833]
Length = 193
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 58/101 (57%), Gaps = 2/101 (1%)
Query: 160 AKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
+ +N I +G+ WRL T F+H+ AH++ N +SL GP +E++ G R+L VY S +
Sbjct: 47 SGVNLYIMEGEVWRLITPTFMHSGFAHMLFNSFSLVLFGPALERMLGGGRFLFVYLLSGL 106
Query: 220 ASSAMSYRF--CNSPAVGASGAIFGLVGSFAVFIMRHRNIL 258
++ + VG+SGAIFGL G + I+ +++L
Sbjct: 107 IANVATLLLEPLTYTHVGSSGAIFGLFGYYIAIIIFRKHML 147
>gi|374340237|ref|YP_005096973.1| hypothetical protein Marpi_1272 [Marinitoga piezophila KA3]
gi|372101771|gb|AEX85675.1| putative membrane protein [Marinitoga piezophila KA3]
Length = 235
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 58/93 (62%), Gaps = 2/93 (2%)
Query: 155 LLLWGAKINSLID-KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGV 213
L++ GA+ LI Q++R T+ F+H I H+ N Y+L +G +E++ GP ++L +
Sbjct: 44 LIVAGAQYGKLITIYHQYFRFITALFVHGGILHISFNLYALYYLGNIVERVYGPYKFLTI 103
Query: 214 YFSSAIASSAMSYRFC-NSPAVGASGAIFGLVG 245
Y +S I ++ F N+ +VGASGAIFGL+G
Sbjct: 104 YLASGIGGGILTQIFIPNAFSVGASGAIFGLIG 136
>gi|298245593|ref|ZP_06969399.1| Rhomboid family protein [Ktedonobacter racemifer DSM 44963]
gi|297553074|gb|EFH86939.1| Rhomboid family protein [Ktedonobacter racemifer DSM 44963]
Length = 294
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 79/134 (58%), Gaps = 3/134 (2%)
Query: 155 LLLWGAKIN-SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGV 213
L+ +GAK N +++ + ++WR T FLHAN+ HL +N +L +G +E++ G RYL +
Sbjct: 95 LIDYGAKYNPAIVQQHEYWRFLTPMFLHANLLHLGLNMLNLLMLGIFLERLLGHTRYLFL 154
Query: 214 YFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILG-GGKEELQHLAKV 271
Y + I S S+ F ++GASGAIFGLVG F++F++ HR GG + +L +
Sbjct: 155 YIITGIISILASFYFAPEEVSLGASGAIFGLVGVFSIFVITHRRAFPFGGLFSILYLIVI 214
Query: 272 IIFNMVCSAAFANI 285
I N+ AN+
Sbjct: 215 IGINLGVGFMIANV 228
>gi|377556210|ref|ZP_09785925.1| Rhomboid family protein [Lactobacillus gastricus PS3]
gi|376168633|gb|EHS87381.1| Rhomboid family protein [Lactobacillus gastricus PS3]
Length = 221
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 11/155 (7%)
Query: 134 TNILLAVNVLVYIAQ-----FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T ++ + VLV+IA LL +GA+ L+ GQ+WRL TSAF+H I HL+
Sbjct: 11 TITIIVIRVLVFIAMELNGGSTNTVTLLNFGAEYTPLLVAGQWWRLITSAFVHIGIMHLL 70
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSF 247
+N L +G +E++ G + + +Y S I+ + +S S A G+S IFGL G+F
Sbjct: 71 LNSIVLYYMGNYIEQLFGHWKLILIYIISVISGNLLSAALSPTSIAAGSSTGIFGLFGAF 130
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAF 282
HR + L+ L + I M+ + F
Sbjct: 131 IFLGAEHRQ-----QSFLRILTRQYIILMIINLVF 160
>gi|451337929|ref|ZP_21908468.1| rhomboid family serine protease [Amycolatopsis azurea DSM 43854]
gi|449419521|gb|EMD25056.1| rhomboid family serine protease [Amycolatopsis azurea DSM 43854]
Length = 320
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 70/134 (52%), Gaps = 12/134 (8%)
Query: 134 TNILLAVNVLVYIAQFATQ--------DKLLLWGAKINS-LIDKGQFWRLATSAFLHANI 184
T +LLA+NV+++ A L G N + G++WR+ TS FL +
Sbjct: 90 TPVLLALNVVIFFITVAQSGSISDNNFSALFQLGELSNPPTLAAGEWWRIFTSGFLQYGL 149
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN---SPAVGASGAIF 241
H+ N +SL +G +E G + +YF S + SA + F + +P VGASGAIF
Sbjct: 150 LHIASNAFSLWFVGRPLETALGRVPFTALYFVSMLGGSAANLVFTDLDAAPVVGASGAIF 209
Query: 242 GLVGSFAVFIMRHR 255
GL+G++ V +++ R
Sbjct: 210 GLIGAYTVIVIKLR 223
>gi|357413987|ref|YP_004925723.1| rhomboid family protein [Streptomyces flavogriseus ATCC 33331]
gi|320011356|gb|ADW06206.1| Rhomboid family protein [Streptomyces flavogriseus ATCC 33331]
Length = 304
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 82/180 (45%), Gaps = 33/180 (18%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLID----------------------KGQF 171
T +L+A+N++ Y+ + + + +G L+D G++
Sbjct: 72 TYVLMALNIVAYVVEVVRSETVDRFGMLGAVLVDGSGGQYYYKGETYPGLELTGVADGEW 131
Query: 172 WRLATSAFLHA------NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+RL T AFLH + HL+ N ++L ++G +E G RYL +Y SA+ S +
Sbjct: 132 YRLLTGAFLHLPPDASFGVMHLVFNMFALWNLGRMVEDQLGRARYLALYLLSAVGGSVLV 191
Query: 226 YRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFAN 284
Y + AVGASGAIFGL SF V R LG + + MV SAAF +
Sbjct: 192 YLVSPETTAVGASGAIFGLAASFYVINRR----LGRDMRPVNRFMAGFLLWMVVSAAFTS 247
>gi|325297592|ref|YP_004257509.1| Peptidase S54, rhomboid domain [Bacteroides salanitronis DSM 18170]
gi|324317145|gb|ADY35036.1| Peptidase S54, rhomboid domain [Bacteroides salanitronis DSM 18170]
Length = 963
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 68/133 (51%), Gaps = 9/133 (6%)
Query: 134 TNILLAVNVLVYIAQF--------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T +L+ +NV ++I T L+ WGA L G +WR T F+H I
Sbjct: 540 TPLLIYINVALFIVMSICGVSLIEPTGISLMKWGADFGPLTLTGDWWRTVTCNFIHIGII 599
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYR-FCNSPAVGASGAIFGLV 244
HL++N Y+L IG +E+I G R+ + Y + + S+ S + + GASG+IFGL
Sbjct: 600 HLLMNMYALLYIGIFLEQIIGSRKLMTAYLLTGLFSALASLTAHPETISAGASGSIFGLY 659
Query: 245 GSFAVFIMRHRNI 257
G F +++ + I
Sbjct: 660 GIFLSYLIFNHKI 672
>gi|319948114|ref|ZP_08022278.1| rhomboid family protein [Dietzia cinnamea P4]
gi|319438225|gb|EFV93181.1| rhomboid family protein [Dietzia cinnamea P4]
Length = 244
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Query: 168 KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS-AMSY 226
+ ++WRL TSAF H HL++N Y L +G +E+ G R+LG+Y SA+ S A+ +
Sbjct: 64 RDEWWRLLTSAFQHFGPMHLLLNMYMLWILGLGIERSIGHARFLGLYLVSALGGSVAVMF 123
Query: 227 RFCNSPAVGASGAIFGLVGSFAVFIMRHR 255
N+ GASGAIFGL+G++A+ M R
Sbjct: 124 TSQNALTAGASGAIFGLMGAYAIVAMSLR 152
>gi|170076963|ref|YP_001733601.1| rhomboid family membrane protein [Synechococcus sp. PCC 7002]
gi|169884632|gb|ACA98345.1| conserved, probable membrane protein, rhomboid family
[Synechococcus sp. PCC 7002]
Length = 550
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 86/183 (46%), Gaps = 32/183 (17%)
Query: 135 NILLAVNVLVYIAQFATQ-----DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
++L+AVN LV++ A + +L G I + + +G++WRL T+ F+H +AHL++
Sbjct: 346 SVLVAVNCLVFLGAIAVSSPENPEAMLQGGGFIPNQVLQGEWWRLFTANFIHVGLAHLLM 405
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS---------AMSYRFCNSPA------- 233
N +L +GP EK G RYL VY S ++ A + + PA
Sbjct: 406 NMATLALLGPFAEKHLGRSRYLLVYLGSGFGATVTLFGLVLLAQGFDYEAFPAWLAYLTT 465
Query: 234 ---------VGASGAIFGLVGSFAVFIMR--HRNILGGGKEELQHLAKVIIFNMVCSAAF 282
VGASG+I G++G+ AV + + R L + + + +I+ +
Sbjct: 466 EIRYGYQVWVGASGSIMGMIGAIAVVLWQGWQRFHLEAAGRQFRLICLIIVIQFAVDLSS 525
Query: 283 ANI 285
N+
Sbjct: 526 PNV 528
>gi|384563997|ref|ZP_10011101.1| putative membrane protein [Saccharomonospora glauca K62]
gi|384519851|gb|EIE97046.1| putative membrane protein [Saccharomonospora glauca K62]
Length = 330
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 72/134 (53%), Gaps = 17/134 (12%)
Query: 136 ILLAVNVLVY-IAQFATQDKL-----------LLWGAKINSLIDKGQFWRLATSAFLHAN 183
+L+AVNV+VY + F D + +LW + LID ++WRL TS FLH
Sbjct: 112 LLIAVNVVVYALTAFQAGDVMNNYLSPVFADGVLWPEAV-VLID--EWWRLLTSGFLHYG 168
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN--SPAVGASGAIF 241
+ HL +N +L +G +E + G R+L VYF S A + + + GASGAI+
Sbjct: 169 LLHLAMNMLALWVLGRDLEMLLGRVRFLAVYFLSMFAGAVAVFVLGEPGTATAGASGAIY 228
Query: 242 GLVGSFAVFIMRHR 255
GL+G+ V ++R R
Sbjct: 229 GLMGAVLVAVLRLR 242
>gi|422960536|ref|ZP_16971984.1| hypothetical protein ESQG_03479 [Escherichia coli H494]
gi|371593784|gb|EHN82660.1| hypothetical protein ESQG_03479 [Escherichia coli H494]
Length = 265
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 68/120 (56%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G +E+I G R L ++ S + +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGGVVERILGKWRLLIIWLFSGVFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|312870529|ref|ZP_07730647.1| peptidase, S54 family [Lactobacillus oris PB013-T2-3]
gi|311093926|gb|EFQ52252.1| peptidase, S54 family [Lactobacillus oris PB013-T2-3]
Length = 215
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 69/120 (57%), Gaps = 6/120 (5%)
Query: 134 TNILLAVNVLVYI----AQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+A+ V++Y+ A +T +LL +GA ++ + G++WRL T F+H AHL+
Sbjct: 8 TVTLVAIQVIIYLLMTLAGGSTNPAVLLRFGALQSAALQAGEWWRLITPVFVHIGFAHLL 67
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLVGSF 247
+N +L IG +E++ G R L +Y SA+ + MS Y + GAS IFGL G+F
Sbjct: 68 INSITLYFIGMYIEQLFGHWRLLIIYLGSAVVGNLMSAYWLPAGISAGASTGIFGLFGAF 127
>gi|256374174|ref|YP_003097834.1| rhomboid family protein [Actinosynnema mirum DSM 43827]
gi|255918477|gb|ACU33988.1| Rhomboid family protein [Actinosynnema mirum DSM 43827]
Length = 298
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 70/146 (47%), Gaps = 7/146 (4%)
Query: 108 TRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFAT-----QDKLLLWGAKI 162
TR+ EG +H T R L + L + Y+ T Q + GA +
Sbjct: 65 TRQARTVEGATHASTGRRLLVVPVLIVVNLALFALTAYLGGGVTDRDVFQSDVTQEGALV 124
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
+ G++WRL TS FLH + H+ +N SL +G +E + G R+L VY S + S
Sbjct: 125 PYFVALGEWWRLVTSGFLHLGVTHIGLNMASLYILGRDLEPVLGRARFLAVYLLSLLGGS 184
Query: 223 AMSYRF--CNSPAVGASGAIFGLVGS 246
A Y F S GASGAI+GL+GS
Sbjct: 185 ASVYLFEEVVSLTAGASGAIYGLMGS 210
>gi|408825539|ref|ZP_11210429.1| hypothetical protein SsomD4_00040 [Streptomyces somaliensis DSM
40738]
Length = 292
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
N + G+++R+ TS FLH + H+ N L +G +E G RYL +Y S +A S
Sbjct: 120 NVGVADGEWYRILTSVFLHQEVWHIGFNMLGLWMLGGPLEAALGRVRYLALYLLSGLAGS 179
Query: 223 AMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHR 255
A++Y N P++GASGA+FGL+G+ V + R R
Sbjct: 180 ALTYVLVAPNQPSLGASGAVFGLMGATFVLLRRLR 214
>gi|241205206|ref|YP_002976302.1| rhomboid family protein [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240859096|gb|ACS56763.1| Rhomboid family protein [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 579
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 68/138 (49%), Gaps = 16/138 (11%)
Query: 134 TNILLAVNVLVY-----------IAQFATQDKLLLWGAKI-NSLIDKGQFWRLATSAFLH 181
T ILLA + VY +A T L + G S+++ GQ+WRL T+ F+H
Sbjct: 206 TYILLATLIAVYAGELTFGLEPPVAGTPTNWTLFVLGGTFRQSIVEHGQWWRLFTAPFMH 265
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP---AVGASG 238
I HL NC SL G E++ G R + ++F+SA+ S S + N+P VGASG
Sbjct: 266 GGILHLAFNCVSLWFAGGLFERLIGWRWFAAIFFASALGGSVASV-WINAPNTIGVGASG 324
Query: 239 AIFGLVGSFAVFIMRHRN 256
I GL + R R+
Sbjct: 325 GIVGLFAAVIAASFRFRS 342
>gi|449093160|ref|YP_007425651.1| hypothetical protein C663_0459 [Bacillus subtilis XF-1]
gi|449027075|gb|AGE62314.1| hypothetical protein C663_0459 [Bacillus subtilis XF-1]
Length = 208
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 89/183 (48%), Gaps = 13/183 (7%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKI---NSLIDKGQFWRLATSAFLHANIAHLMVN 190
+LA+ ++++ ++LW + N + G++WRL T LHA HL+ N
Sbjct: 18 VTFILALQAVLWLFFSLPAHSVVLWRDTVTGYNLGVANGEWWRLITPILLHAGFTHLLFN 77
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA----VGASGAIFGLVGS 246
S+ P +E++ G R+L VY S I + +Y P VGASGAIFGL G
Sbjct: 78 SMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGTY--VTEPLDYVHVGASGAIFGLFGV 135
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANIVKIESRHTLTGET--CYFIDP 304
+ +F++ RN L G+E + + ++ F ++ S +NI + L G +F P
Sbjct: 136 Y-LFMVLFRNEL-IGQEHSKMIITLLAFAVLMSFINSNINMMAHLFGLCGGVSFLFFFVP 193
Query: 305 SKQ 307
K+
Sbjct: 194 KKK 196
>gi|297193265|ref|ZP_06910663.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
25486]
gi|297151714|gb|EFH31321.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
25486]
Length = 299
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 85/168 (50%), Gaps = 21/168 (12%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLID----------KGQFWRLATSAFL 180
R T I+LA+N+ V+ +D+ + I D G+++RLAT+ FL
Sbjct: 85 RLITKIILALNIAVFGLALGLEDEFVNRFTMIGYAYDPSLAEVVGVADGEWYRLATAMFL 144
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA---VGAS 237
H H+ N L +G +E+ G RYL +Y S +A SA +Y SPA +GAS
Sbjct: 145 HETTWHIFFNMLLLWWLGGPLEEALGRVRYLALYLISGLAGSAFTY-LIESPAQGSLGAS 203
Query: 238 GAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
GAI+GL+G+ V + R R ++L+ + +I N+V + +A I
Sbjct: 204 GAIYGLLGATVVLMRRMR-------QDLRPIMVLIAINLVITFYWAGI 244
>gi|108803986|ref|YP_643923.1| rhomboid-like protein [Rubrobacter xylanophilus DSM 9941]
gi|108765229|gb|ABG04111.1| Rhomboid-like protein [Rubrobacter xylanophilus DSM 9941]
Length = 209
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 146 IAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKIC 205
+A ++L GA + + +G+ WRL TS FLHA HL +N SL +G E
Sbjct: 14 VALMTQPPEVLARGALVPLFVARGEVWRLLTSMFLHAGFIHLALNMLSLYFLGSFAETAF 73
Query: 206 GPRRYLGVYFSSAIASSAMSYRFCNS---PAVGASGAIFGLVGSFAVFIMRH 254
G R+ +Y S + SS ++Y + PAVGASGAIFGL+G + +R
Sbjct: 74 GRLRFFALYMLSGL-SSGIAYLYFGGFAQPAVGASGAIFGLLGGVLGYALRR 124
>gi|116252699|ref|YP_768537.1| transmembrane rhomboid family protein [Rhizobium leguminosarum bv.
viciae 3841]
gi|115257347|emb|CAK08442.1| putative transmembrane rhomboid family protein [Rhizobium
leguminosarum bv. viciae 3841]
Length = 579
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 68/138 (49%), Gaps = 16/138 (11%)
Query: 134 TNILLAVNVLVY-----------IAQFATQDKLLLWGAKI-NSLIDKGQFWRLATSAFLH 181
T ILLA + VY +A T L + G S+++ GQ+WRL T+ F+H
Sbjct: 206 TYILLATLIAVYAGELTFGLEPPVAGTPTNWTLFVLGGTFRQSIVEHGQWWRLFTAPFMH 265
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP---AVGASG 238
I HL NC SL G E++ G R + ++F+SA+ S S + N+P VGASG
Sbjct: 266 GGILHLAFNCVSLWFAGGLFERLIGWRWFAAIFFASALGGSVASV-WINAPNTIGVGASG 324
Query: 239 AIFGLVGSFAVFIMRHRN 256
I GL + R R+
Sbjct: 325 GIVGLFAAVIAASFRFRS 342
>gi|416408492|ref|ZP_11688379.1| hypothetical protein CWATWH0003_5135a5, partial [Crocosphaera
watsonii WH 0003]
gi|357260746|gb|EHJ10106.1| hypothetical protein CWATWH0003_5135a5, partial [Crocosphaera
watsonii WH 0003]
Length = 192
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 66/131 (50%), Gaps = 11/131 (8%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+ +N LV++ Q + L GA + ++ +GQFWRL T+ FLH H
Sbjct: 2 TLFLIILNGLVFVTQLRLGGSENIETLYELGALVPVVVWEGQFWRLITANFLHYGWGHFS 61
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS-SAMSYRF-----CNSPAVGASGAIFG 242
+N +L IG +EKI Y+ +YF S I S SA SY + VGAS ++ G
Sbjct: 62 MNMLALYFIGNLVEKISNKYNYITIYFLSGIGSMSAFSYLAHYTGKLDYILVGASASVMG 121
Query: 243 LVGSFAVFIMR 253
LVGS +R
Sbjct: 122 LVGSLTAIFLR 132
>gi|432333562|ref|ZP_19585328.1| rhomboid family protein [Rhodococcus wratislaviensis IFP 2016]
gi|430779509|gb|ELB94666.1| rhomboid family protein [Rhodococcus wratislaviensis IFP 2016]
Length = 249
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 69/133 (51%), Gaps = 12/133 (9%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL----------WGAKINSLIDKGQFWRLATSAFLHAN 183
T IL+AVNV +++ A ++ W +++D GQ R+ S FLH
Sbjct: 28 TYILMAVNVGIFLITAAQSRSIMQNQAGSKLFADWALFPPAVVD-GQIVRVLGSGFLHFG 86
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFG 242
I HL VN ++L IG E + G RY VYF S + SA F + GASGA+FG
Sbjct: 87 IIHLAVNMFALWVIGRDTELVLGRARYACVYFVSLLGGSAAVMLFQLGAVTAGASGAVFG 146
Query: 243 LVGSFAVFIMRHR 255
L+G+ AV ++R R
Sbjct: 147 LMGAQAVILLRLR 159
>gi|430741443|ref|YP_007200572.1| hypothetical protein Sinac_0438 [Singulisphaera acidiphila DSM
18658]
gi|430013163|gb|AGA24877.1| putative membrane protein [Singulisphaera acidiphila DSM 18658]
Length = 654
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 13/136 (9%)
Query: 134 TNILLAVNVLVYIAQFA--------TQDKLLLWGAKIN-SLIDKGQFWRLATSAFLHANI 184
T ++ A VLVY+A A + +L WGA S++ Q WRL TS FLH +
Sbjct: 273 TPLMAAACVLVYVAMVARGVSPIDPSPRVMLDWGASFGPSVVFDRQVWRLLTSMFLHFGL 332
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFG 242
HL +N + L + GP +E+ G + +Y S + +A S F + + GASGAIFG
Sbjct: 333 IHLAMNLWCLLTTGPVVERFFGHLGFAALYVLSGLGGAAASL-FVHPTFICAGASGAIFG 391
Query: 243 LVGSFAVFI-MRHRNI 257
+ G F+ +RHR++
Sbjct: 392 VFGGLLGFLAIRHRDV 407
>gi|432615475|ref|ZP_19851606.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE75]
gi|431157341|gb|ELE57985.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE75]
Length = 625
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G +E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGGAVERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|372325402|ref|ZP_09519991.1| GlpG-like protein [Oenococcus kitaharae DSM 17330]
gi|366984210|gb|EHN59609.1| GlpG-like protein [Oenococcus kitaharae DSM 17330]
Length = 234
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 73/128 (57%), Gaps = 4/128 (3%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
L+L G ++SL G+++R T FLHA++ H+ N +L +GP +EK+ G ++L
Sbjct: 45 QSLVLLGGGVDSLFMSGEWYRAFTPIFLHASLMHIFSNMLTLVIVGPFVEKLFGKGKFLL 104
Query: 213 VYFSSAIASSAMSYRFCNSP---AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLA 269
+Y + + + +++ F +P +VGASGA+FGL G V +RN + +L A
Sbjct: 105 IYLITGVWGNLLTFIFDPNPNVVSVGASGALFGLFGVMIVSGWYNRNNF-VFRRQLIIFA 163
Query: 270 KVIIFNMV 277
+ +FN++
Sbjct: 164 ALAVFNLI 171
>gi|432380300|ref|ZP_19623258.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE15]
gi|432386071|ref|ZP_19628969.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE16]
gi|432512872|ref|ZP_19750108.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE224]
gi|432610348|ref|ZP_19846520.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE72]
gi|432645106|ref|ZP_19880906.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE86]
gi|432654904|ref|ZP_19890617.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE93]
gi|432697983|ref|ZP_19933151.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE169]
gi|432744603|ref|ZP_19979304.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE43]
gi|432903009|ref|ZP_20112626.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE194]
gi|432942624|ref|ZP_20139883.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE183]
gi|432970790|ref|ZP_20159668.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE207]
gi|432984306|ref|ZP_20173044.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE215]
gi|433037609|ref|ZP_20225226.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE113]
gi|433081560|ref|ZP_20268034.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE133]
gi|433100186|ref|ZP_20286296.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE145]
gi|433143253|ref|ZP_20328421.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE168]
gi|433187461|ref|ZP_20371581.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE88]
gi|430909577|gb|ELC30943.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE16]
gi|430911560|gb|ELC32843.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE15]
gi|431044430|gb|ELD54703.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE224]
gi|431151166|gb|ELE52201.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE72]
gi|431183884|gb|ELE83657.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE86]
gi|431194298|gb|ELE93563.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE93]
gi|431246693|gb|ELF40951.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE169]
gi|431295076|gb|ELF85247.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE43]
gi|431436539|gb|ELH18054.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE194]
gi|431453676|gb|ELH34060.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE183]
gi|431485927|gb|ELH65584.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE207]
gi|431506049|gb|ELH84653.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE215]
gi|431555144|gb|ELI29002.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE113]
gi|431605395|gb|ELI74784.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE133]
gi|431622309|gb|ELI91090.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE145]
gi|431665824|gb|ELJ32534.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE168]
gi|431709096|gb|ELJ73593.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE88]
Length = 625
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 69/120 (57%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G +E+I G R L ++ S + +S Y +S +VGASGAI G+ G+
Sbjct: 83 ALLVVGGAVERILGKWRLLIIWLFSGVFGGLISACYALRDSDQIVISVGASGAIMGIAGA 142
>gi|432480048|ref|ZP_19722012.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE210]
gi|431009897|gb|ELD24501.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE210]
Length = 625
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G +E+I G R L V+ S + +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGGVVERILGKWRLLIVWLFSGVFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|365860674|ref|ZP_09400469.1| hypothetical protein SPW_0771 [Streptomyces sp. W007]
gi|364009831|gb|EHM30776.1| hypothetical protein SPW_0771 [Streptomyces sp. W007]
Length = 220
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ +GQ++RL TS FLH + H+ N L +G +E G RYL +Y S +A SA++
Sbjct: 51 VAEGQWYRLVTSMFLHQEVVHIAFNMLGLWWLGGQLEAALGRSRYLALYLLSGLAGSALT 110
Query: 226 YRFCN--SPAVGASGAIFGLVGSFAVFIMRHRN 256
Y ++GASGA++GL G+ AV +MR N
Sbjct: 111 YLLAEPGQGSLGASGAVYGLFGATAV-LMRRMN 142
>gi|259503580|ref|ZP_05746482.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
gi|259168453|gb|EEW52948.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
Length = 219
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 71/130 (54%), Gaps = 6/130 (4%)
Query: 124 RTNLFIGRQWTNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSA 178
+T+L+ T +L+A+ ++VY+ T L+ +GA + + G++WRL T
Sbjct: 2 KTSLWKDNPVTVVLIAIQLVVYLLMTLAGGSTTPAVLIRFGALQAAAVQAGEWWRLLTPV 61
Query: 179 FLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGAS 237
F+H AHL++N +L IG +E++ G R L +Y SAI + +S Y + GAS
Sbjct: 62 FVHIGFAHLLINSITLYFIGMYIEQLFGHWRMLVIYLGSAIVGNLLSAYWLPAGISAGAS 121
Query: 238 GAIFGLVGSF 247
IFGL G+F
Sbjct: 122 TGIFGLFGAF 131
>gi|254295337|ref|YP_003061360.1| rhomboid family protein [Hirschia baltica ATCC 49814]
gi|254043868|gb|ACT60663.1| Rhomboid family protein [Hirschia baltica ATCC 49814]
Length = 208
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 70/130 (53%), Gaps = 5/130 (3%)
Query: 126 NLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
+ +G T L+A NV + F+ + + ++ K Q++R+ TS FLH +
Sbjct: 3 EVLLGAPITLALIAANVAFSLIGFSNEKFFRANYLLVGDIVQKHQWYRVLTSGFLHVSPG 62
Query: 186 HLMVNCYSLNSIGPTME-KICGPRRYLGVYFSSAIASSAMS----YRFCNSPAVGASGAI 240
HL++N +L GP +E K+ GP YL VYF S IA A + YR + AVGASGA+
Sbjct: 63 HLLLNMLTLFFFGPYLEIKLLGPTGYLLVYFVSLIAGGAWAVLENYRRLDYSAVGASGAV 122
Query: 241 FGLVGSFAVF 250
G + SF +F
Sbjct: 123 SGALISFCMF 132
>gi|299823020|ref|ZP_07054906.1| possible Rhomboid protease [Listeria grayi DSM 20601]
gi|299816549|gb|EFI83787.1| possible Rhomboid protease [Listeria grayi DSM 20601]
Length = 512
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 6/161 (3%)
Query: 125 TNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T FIG ++L VL + L+ WG K N LI G++WRL T FLH
Sbjct: 185 TYTFIGL----LVLMFLVLTFTGGSTNSFNLIKWGGKFNPLIYAGEWWRLITPMFLHNGW 240
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
H+ N L +GP EKI G R+ + A + S+ N +VGAS ++F +
Sbjct: 241 MHIAANAVMLYIVGPWAEKIYGKWRFALILLIGGFAGNLASFVLNNHLSVGASTSVFAVF 300
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
G+ ++ N+ K ++A +++ N++ A I
Sbjct: 301 GALLYLVVLKPNLY--AKTIGTNVATLVVVNILIGLFSAEI 339
>gi|332281798|ref|ZP_08394211.1| peptidase [Shigella sp. D9]
gi|417247117|ref|ZP_12040218.1| peptidase, S54 family [Escherichia coli 9.0111]
gi|332104150|gb|EGJ07496.1| peptidase [Shigella sp. D9]
gi|386209745|gb|EII20232.1| peptidase, S54 family [Escherichia coli 9.0111]
Length = 625
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G +E+I G R L V+ S + +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGGVVERILGKWRLLIVWLFSGVFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|443670730|ref|ZP_21135859.1| Rhomboid family protein [Rhodococcus sp. AW25M09]
gi|443416665|emb|CCQ14196.1| Rhomboid family protein [Rhodococcus sp. AW25M09]
Length = 251
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
L+ G +RL S F+H HL+VN ++L IG +E I G RYL VYF S + SA
Sbjct: 67 LVANGDLFRLIGSGFVHIGPIHLLVNMFALYLIGRDVELILGRSRYLAVYFLSLLGGSAS 126
Query: 225 SYRFCNSPA--VGASGAIFGLVGSFAVFIMRHR 255
N A GASGA+FGL+G+ AV ++R +
Sbjct: 127 VMVLENPLAATAGASGAVFGLLGAQAVILLRLK 159
>gi|331682074|ref|ZP_08382698.1| outer membrane protein [Escherichia coli H299]
gi|450186095|ref|ZP_21889397.1| hypothetical protein A364_03753 [Escherichia coli SEPT362]
gi|331080753|gb|EGI51927.1| outer membrane protein [Escherichia coli H299]
gi|449324675|gb|EMD14600.1| hypothetical protein A364_03753 [Escherichia coli SEPT362]
Length = 625
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G +E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGGAVERILGKWRLLIIWLFSGIFGGLISACYALHESEQIVISVGASGAIMGIAGA 142
>gi|182437510|ref|YP_001825229.1| hypothetical protein SGR_3717 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178466026|dbj|BAG20546.1| putative membrane protein [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 285
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 68/122 (55%), Gaps = 9/122 (7%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ +GQ++RL TS FLH + H+ N L +G +E G RYL +Y S +A SA++
Sbjct: 117 VAEGQWYRLVTSMFLHQEVVHIAFNMLGLWWLGGQLEAALGRSRYLALYLLSGLAGSALT 176
Query: 226 YRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFA 283
Y N ++GASGA++GL G+ AV +MR N +++ + ++ NMV + +
Sbjct: 177 YLIAAPNQGSLGASGAVYGLFGATAV-LMRRMN------YDMRPVLVLLAINMVFTFTWG 229
Query: 284 NI 285
I
Sbjct: 230 GI 231
>gi|222155404|ref|YP_002555543.1| hypothetical protein LF82_073 [Escherichia coli LF82]
gi|387615935|ref|YP_006118957.1| outer membrane protein [Escherichia coli O83:H1 str. NRG 857C]
gi|222032409|emb|CAP75148.1| hypothetical protein LF82_073 [Escherichia coli LF82]
gi|312945196|gb|ADR26023.1| outer membrane protein [Escherichia coli O83:H1 str. NRG 857C]
Length = 625
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 69/120 (57%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G +E+I G R L ++ S + +S Y +S +VGASGAI G+ G+
Sbjct: 83 ALLVVGGAVERILGKWRLLIIWLFSGVFGGLISACYALRDSDQIVISVGASGAIMGIAGA 142
>gi|237832263|ref|XP_002365429.1| rhomboid-like protease TgROM2 [Toxoplasma gondii ME49]
gi|211963093|gb|EEA98288.1| rhomboid-like protease TgROM2 [Toxoplasma gondii ME49]
Length = 283
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 61/119 (51%), Gaps = 13/119 (10%)
Query: 140 VNVLVYIAQFA-----------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
V + VYIA A T L+++GA I LI G+ WRL FLH N+ H++
Sbjct: 68 VQIAVYIASLAAGLAPNEILAPTPQTLVMFGANIPELIRVGEIWRLICPLFLHLNLFHIL 127
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSPAVGASGAIFGLVG 245
+N + IG T+E+ G + L VYF + ++ +S FC GAS A+F L+G
Sbjct: 128 MNLWVQIRIGLTIEEKYGWKMLLAVYFGVGVLANMISAAVLFCGQMKAGASTAVFALIG 186
>gi|182439278|ref|YP_001826997.1| hypothetical protein SGR_5485 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178467794|dbj|BAG22314.1| putative membrane protein [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 303
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 84/180 (46%), Gaps = 33/180 (18%)
Query: 134 TNILLAVNVLVYIAQFA---TQDKLLLWGAKIN-------------------SLIDKGQF 171
T +L+A+NVLVYI + D+ + GA + + I G++
Sbjct: 72 TYVLMALNVLVYIGEVVRPEIVDRFAVLGAALTGPDGEQYYYRGDTYPGYDLTGIADGEW 131
Query: 172 WRLATSAFLHA------NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+RL T AFLH + HL+ N ++L +IG +E G RYL +Y SA+ S +
Sbjct: 132 YRLVTGAFLHLPPDASFGVMHLVFNMFALWNIGRAVEGQLGRARYLALYLLSAVGGSVLV 191
Query: 226 YRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFAN 284
Y ++ VGASGA+FGL ++ V HR LG + + MV SA F +
Sbjct: 192 YLLAPDTSTVGASGAVFGLAAAYWVI---HRR-LGHDMAAVNRFMAGFLVWMVLSALFTS 247
>gi|379733579|ref|YP_005327084.1| putative rhomboid protease [Blastococcus saxobsidens DD2]
gi|378781385|emb|CCG01035.1| Putative rhomboid protease [Blastococcus saxobsidens DD2]
Length = 253
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
++ GQ WRL T+AFLH + HL +N +L G +E+ G RY+G+Y SA+ S
Sbjct: 85 VEFGQPWRLLTAAFLHIGLLHLALNMLALLIFGSELERQLGRWRYVGLYLVSALGGSTAI 144
Query: 226 YRFCNS--PAVGASGAIFGLVGSFAVFIMRHRN 256
F + P GAS AI+GL+G+ V ++ R
Sbjct: 145 QLFGDPLRPVAGASTAIYGLLGALGVLMLVRRQ 177
>gi|148544432|ref|YP_001271802.1| rhomboid family protein [Lactobacillus reuteri DSM 20016]
gi|184153796|ref|YP_001842137.1| hypothetical protein LAR_1141 [Lactobacillus reuteri JCM 1112]
gi|227363140|ref|ZP_03847275.1| S54 family peptidase [Lactobacillus reuteri MM2-3]
gi|325682754|ref|ZP_08162270.1| S54 family peptidase [Lactobacillus reuteri MM4-1A]
gi|148531466|gb|ABQ83465.1| Rhomboid family protein [Lactobacillus reuteri DSM 20016]
gi|183225140|dbj|BAG25657.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
gi|227071858|gb|EEI10146.1| S54 family peptidase [Lactobacillus reuteri MM2-3]
gi|324977104|gb|EGC14055.1| S54 family peptidase [Lactobacillus reuteri MM4-1A]
Length = 219
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 143 LVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTME 202
LVY LL GA+ LI +G++WRL + FLH ++HL+VN +L IG +E
Sbjct: 26 LVYAGGSTNTVTLLNMGARSTPLIREGEWWRLVSPVFLHVGLSHLVVNSVTLLYIGRYIE 85
Query: 203 KICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSF 247
+ G R + +YF SA+ + S F S + GAS AIFGL G+F
Sbjct: 86 EFFGHWRMVVIYFVSALFGNFTSAVFMPSTISAGASTAIFGLFGAF 131
>gi|256389276|ref|YP_003110840.1| rhomboid family protein [Catenulispora acidiphila DSM 44928]
gi|256355502|gb|ACU68999.1| Rhomboid family protein [Catenulispora acidiphila DSM 44928]
Length = 356
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 67/123 (54%), Gaps = 9/123 (7%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ G+++RL TS FLHAN+ H+ N SL IGP +E + G R++ VY +A + S
Sbjct: 138 VANGEWYRLVTSMFLHANLIHIASNMISLFFIGPMLEAMLGRLRFVLVYLIGGLAGAVTS 197
Query: 226 YRFCN--SPA-VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAF 282
Y F SPA +GASGAI + G V +R R IL G +A V++ N+V
Sbjct: 198 YWFMTPLSPASLGASGAISAVFGCLVVIGLR-RKILDPGM-----IAVVLVINIVIPLQN 251
Query: 283 ANI 285
NI
Sbjct: 252 TNI 254
>gi|326779930|ref|ZP_08239195.1| Peptidase S54, rhomboid domain protein [Streptomyces griseus
XylebKG-1]
gi|326660263|gb|EGE45109.1| Peptidase S54, rhomboid domain protein [Streptomyces griseus
XylebKG-1]
Length = 303
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 84/180 (46%), Gaps = 33/180 (18%)
Query: 134 TNILLAVNVLVYIAQFA---TQDKLLLWGAKIN-------------------SLIDKGQF 171
T +L+A+NVLVYI + D+ + GA + + I G++
Sbjct: 72 TYVLMALNVLVYIGEVVRPEIVDRFAVLGAALTGPDGEQYYYRGDTYPGYDLTGIADGEW 131
Query: 172 WRLATSAFLHA------NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+RL T AFLH + HL+ N ++L +IG +E G RYL +Y SA+ S +
Sbjct: 132 YRLVTGAFLHLPPDASFGVMHLVFNMFALWNIGRAVEGQLGRARYLALYLLSAVGGSVLV 191
Query: 226 YRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFAN 284
Y ++ VGASGA+FGL ++ V HR LG + + MV SA F +
Sbjct: 192 YLLAPDTSTVGASGAVFGLAAAYWVI---HRR-LGHDMAAVNRFMAGFLVWMVLSALFTS 247
>gi|420345839|ref|ZP_14847268.1| rhomboid family protein [Shigella boydii 965-58]
gi|391275891|gb|EIQ34674.1| rhomboid family protein [Shigella boydii 965-58]
Length = 265
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH +++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHNSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G +E+I G R L V+ S + +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGGVVERILGKWRLLIVWLFSGVFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|338730738|ref|YP_004660130.1| Rhomboid family protein [Thermotoga thermarum DSM 5069]
gi|335365089|gb|AEH51034.1| Rhomboid family protein [Thermotoga thermarum DSM 5069]
Length = 230
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 79/154 (51%), Gaps = 10/154 (6%)
Query: 134 TNILLAVNVLVY--------IAQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANI 184
T ++L+ NVL+ I F Q LL+ GA+ L+ G+++R+ T+ F+H +
Sbjct: 7 TYVILSFNVLIAVFMFFLSSIPVFRNQAYLLIRLGAQYGPLVSGGEWYRVITAMFVHGGL 66
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVY-FSSAIASSAMSYRFCNSPAVGASGAIFGL 243
HL+ N Y+L G +E I G +++ Y + A+ + A + S +VGASGAIFGL
Sbjct: 67 LHLLFNSYALFYFGTIVESIYGTEKFVIFYLLAGAVGNLATHVFYYRSISVGASGAIFGL 126
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMV 277
VG R + + L +IIFN+V
Sbjct: 127 VGILFALGFRRDTPIFMRQFTGMALLPMIIFNVV 160
>gi|417886300|ref|ZP_12530447.1| peptidase, S54 family [Lactobacillus oris F0423]
gi|341593798|gb|EGS36623.1| peptidase, S54 family [Lactobacillus oris F0423]
Length = 215
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Query: 134 TNILLAVNVLVYI----AQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+A+ V +Y+ A +T +LL +GA ++ + G++WRL T F+H AHL+
Sbjct: 8 TVALIAIQVTIYLLMTLAGGSTNPAVLLQFGALQSAALQAGEWWRLITPVFVHIGFAHLL 67
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLVGSF 247
+N +L IG +E++ G R L +Y SA+ + MS Y + GAS IFGL G+F
Sbjct: 68 INSITLYFIGMYIEQLFGHWRLLVIYLGSAVVGNLMSAYWLPAGISAGASTGIFGLFGAF 127
>gi|326778165|ref|ZP_08237430.1| Peptidase S54, rhomboid domain protein [Streptomyces griseus
XylebKG-1]
gi|326658498|gb|EGE43344.1| Peptidase S54, rhomboid domain protein [Streptomyces griseus
XylebKG-1]
Length = 300
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 68/122 (55%), Gaps = 9/122 (7%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ +GQ++RL TS FLH + H+ N L +G +E G RYL +Y S +A SA++
Sbjct: 132 VAEGQWYRLVTSMFLHQEVVHIAFNMLGLWWLGGQLEAALGRSRYLALYLLSGLAGSALT 191
Query: 226 YRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFA 283
Y N ++GASGA++GL G+ AV +MR N +++ + ++ NMV + +
Sbjct: 192 YLIAAPNQGSLGASGAVYGLFGATAV-LMRRMNY------DMRPVLVLLAINMVFTFTWG 244
Query: 284 NI 285
I
Sbjct: 245 GI 246
>gi|255646809|gb|ACU23876.1| unknown [Glycine max]
Length = 212
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 169 GQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF 228
G++WRL T FLHA I H+ V+C++L + GP + K G + +Y +A + +S+
Sbjct: 3 GEWWRLVTPMFLHAGIFHMAVSCWALLTFGPQVCKGYGSFTFFLIYILGGVACNFISFLH 62
Query: 229 CNSPAVGASGAIFGLVGSFAVFIMRHRNILGG-GKEELQHLAKVI 272
P VG +G +F ++G++ ++ +++++++ E L H A ++
Sbjct: 63 TPDPTVGGTGPVFAIIGAWLMYQIQNKDVIASDASENLFHKAVIM 107
>gi|302559651|ref|ZP_07311993.1| rhomboid family protein [Streptomyces griseoflavus Tu4000]
gi|302477269|gb|EFL40362.1| rhomboid family protein [Streptomyces griseoflavus Tu4000]
Length = 295
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 88/163 (53%), Gaps = 18/163 (11%)
Query: 134 TNILLAVNVLVYIAQFA----TQDKLLL--WGAKI---NSLIDKGQFWRLATSAFLHANI 184
T ILL +N+ V++A +D L+ W + +G+++RL TS F H I
Sbjct: 86 TKILLGINLAVFLAVQVRPSLVRDLYLIGTWPPAPFLPTQGVAEGEWYRLFTSMFTHQEI 145
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN--SPAVGASGAIFG 242
H+ N SL +G +E+ G RYL +Y S +A A++Y + + ++GASGAIFG
Sbjct: 146 WHIAFNMLSLWWLGGPLEQALGRVRYLTLYLISGLAGGALTYLLASGTTASLGASGAIFG 205
Query: 243 LVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
L G+ AV +MR N +++ + +++ N++ + ++NI
Sbjct: 206 LFGATAV-LMRRLNY------DMRPVIALLVINLIFTFGWSNI 241
>gi|359765361|ref|ZP_09269192.1| rhomboid family protein [Gordonia polyisoprenivorans NBRC 16320]
gi|359317295|dbj|GAB22025.1| rhomboid family protein [Gordonia polyisoprenivorans NBRC 16320]
Length = 264
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 9/131 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDKL-------LLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T L+A+NV+V+ LL G + + GQ+WRL T+ FLH ++ H
Sbjct: 40 TYTLIAINVVVFAYTIYAAHSFNVEVSGPLLHGELVRGNVFLGQYWRLLTAGFLHYSLIH 99
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA--MSYRFCNSPAVGASGAIFGLV 244
L VN SL +G +E G R++ VY ++ + SA M + + + GASGAI+GL+
Sbjct: 100 LAVNMISLYILGRDLEIALGIGRFVMVYMTALLGGSAAVMIAQSNEARSAGASGAIYGLM 159
Query: 245 GSFAVFIMRHR 255
G+ + ++R R
Sbjct: 160 GAMLIVVLRLR 170
>gi|365832927|ref|ZP_09374453.1| hypothetical protein HMPREF1021_03217 [Coprobacillus sp. 3_3_56FAA]
gi|365259760|gb|EHM89743.1| hypothetical protein HMPREF1021_03217 [Coprobacillus sp. 3_3_56FAA]
Length = 214
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 7/95 (7%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF- 228
Q+WRL ++ F+H I H+ NCYSL ++G ME + G +RYL + +SA+A++ + F
Sbjct: 54 QYWRLISANFIHFGIMHIFCNCYSLVNLGSVMEYLLGMKRYLIILIASALATTILPTVFY 113
Query: 229 ------CNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
+S G SGAIFGL+G+ + +++
Sbjct: 114 ILTGNGASSIMGGISGAIFGLMGALLALAWKFKDV 148
>gi|443488760|ref|YP_007366907.1| rhomboid family serine protease [Mycobacterium liflandii 128FXT]
gi|442581257|gb|AGC60400.1| rhomboid family serine protease [Mycobacterium liflandii 128FXT]
Length = 254
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ GQ +RL TSAF+H HL+ N ++L +GP +E G R+ G+Y SA+ S +
Sbjct: 71 VADGQLYRLVTSAFMHYGTLHLVFNMWALYIVGPPLEMWLGRLRFGGLYALSALGGSVLV 130
Query: 226 YRFC--NSPAVGASGAIFGLVGSFAVFIMRHR 255
Y N+ GASGAIFGL G A F++ R
Sbjct: 131 YLIAPLNTATAGASGAIFGLFG--ATFVVAKR 160
>gi|408355704|ref|YP_006844235.1| peptidase S54 family protein [Amphibacillus xylanus NBRC 15112]
gi|407726475|dbj|BAM46473.1| peptidase S54 family protein [Amphibacillus xylanus NBRC 15112]
Length = 254
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 64/109 (58%), Gaps = 6/109 (5%)
Query: 137 LLAVNVLVYIAQFATQD--KLL-LWGAKINSLIDKGQFWRLATSAFLHA--NIAHLMVNC 191
+LA+N+++++ + KL+ +WG N+ I+ G++WRL T FLHA + H++ N
Sbjct: 21 ILAINIILWLLMYFPNPIGKLIWIWGVGWNTGIEIGEYWRLVTPIFLHAPNEVTHILFNS 80
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGA 239
+SL GP +E++ G +++ VY + I + +Y N +GASGA
Sbjct: 81 FSLILFGPALEQMIGKFKFIFVYLFTGIVGNVFTYFVGINDLHLGASGA 129
>gi|289193057|ref|YP_003458998.1| Rhomboid family protein [Methanocaldococcus sp. FS406-22]
gi|288939507|gb|ADC70262.1| Rhomboid family protein [Methanocaldococcus sp. FS406-22]
Length = 190
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 54/83 (65%), Gaps = 5/83 (6%)
Query: 172 WRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS--SAMSYRFC 229
W++ TS F+HANI HL+VN + L G +E + G ++YL ++ S I + ++Y +
Sbjct: 39 WQIITSMFMHANITHLLVNMFVLFIFGTYLENMIGSKKYLIIFLLSGIIGNLAYIAYAYL 98
Query: 230 N---SPAVGASGAIFGLVGSFAV 249
+P+VGASGAIFG++G+ A+
Sbjct: 99 TGDYNPSVGASGAIFGIMGALAI 121
>gi|419967548|ref|ZP_14483436.1| rhomboid family protein [Rhodococcus opacus M213]
gi|424859689|ref|ZP_18283671.1| rhomboid family protein [Rhodococcus opacus PD630]
gi|356661133|gb|EHI41465.1| rhomboid family protein [Rhodococcus opacus PD630]
gi|414567056|gb|EKT77861.1| rhomboid family protein [Rhodococcus opacus M213]
Length = 305
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 69/133 (51%), Gaps = 12/133 (9%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL----------WGAKINSLIDKGQFWRLATSAFLHAN 183
T IL+AVNV +++ A ++ W +++D GQ R+ S FLH
Sbjct: 84 TYILMAVNVGIFLITAAQSRSIMQNQAGSKLFADWALFPPAVVD-GQIVRVLGSGFLHFG 142
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFG 242
I HL VN ++L IG E + G RY VYF S + SA F + GASGA+FG
Sbjct: 143 IIHLAVNMFALWVIGRDTELVLGRARYACVYFVSLLGGSAAVMLFQLGAVTAGASGAVFG 202
Query: 243 LVGSFAVFIMRHR 255
L+G+ AV ++R R
Sbjct: 203 LMGAQAVILLRLR 215
>gi|119962891|ref|YP_945847.1| rhomboid family membrane protein [Arthrobacter aurescens TC1]
gi|403525113|ref|YP_006660000.1| rhomboid family membrane protein [Arthrobacter sp. Rue61a]
gi|119949750|gb|ABM08661.1| putative rhomboid family membrane protein [Arthrobacter aurescens
TC1]
gi|403227540|gb|AFR26962.1| putative rhomboid family membrane protein [Arthrobacter sp. Rue61a]
Length = 284
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 79/152 (51%), Gaps = 11/152 (7%)
Query: 127 LFIGRQW-TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHAN-- 183
L +GR T +++ + LVY+ Q+ + ++ + WR+ T+AFLH+
Sbjct: 72 LAVGRPLVTFVIIGLCALVYVLQWIVPGDAVFEDFAFANIFAVSEPWRMVTAAFLHSQGF 131
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS----AMSYRFCNSPAVGASGA 239
+ H+++N Y+L G +E + G R+L VY SAI S A++ VGASGA
Sbjct: 132 LLHIVLNMYTLWIFGQALEPLLGRIRFLAVYLISAIGGSVGFLALTPTLPPVGVVGASGA 191
Query: 240 IFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
IFGL G+ V + RHR GG ++L L +
Sbjct: 192 IFGLFGAMLV-VQRHR---GGETKQLWVLIAI 219
>gi|365862905|ref|ZP_09402633.1| Peptidase S54, rhomboid domain protein [Streptomyces sp. W007]
gi|364007635|gb|EHM28647.1| Peptidase S54, rhomboid domain protein [Streptomyces sp. W007]
Length = 308
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 84/180 (46%), Gaps = 33/180 (18%)
Query: 134 TNILLAVNVLVYIAQFA---TQDKLLLWGAKIN-------------------SLIDKGQF 171
T L+A+NVLVYI + D+ + GA + + I G++
Sbjct: 77 TYALMALNVLVYIGEVVRPEIVDRFAVLGAALTGPDGEQYYYRGDTYAGYELTGIADGEW 136
Query: 172 WRLATSAFLHA------NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+RL T AFLH + HL+ N ++L +IG +E G RYL +Y SA+ S +
Sbjct: 137 YRLVTGAFLHLPPDASFGVMHLVFNMFALWNIGRAVEGQLGRARYLALYLLSAVGGSVLV 196
Query: 226 YRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFAN 284
Y ++ VGASGA+FGL ++ V HR LG + + M+ SAAF +
Sbjct: 197 YLLAPDTSTVGASGAVFGLAAAYWVI---HRR-LGRDMAAVNRFMAGFLLWMLISAAFTS 252
>gi|384107096|ref|ZP_10007998.1| rhomboid family protein [Rhodococcus imtechensis RKJ300]
gi|383833031|gb|EID72500.1| rhomboid family protein [Rhodococcus imtechensis RKJ300]
Length = 305
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 69/133 (51%), Gaps = 12/133 (9%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL----------WGAKINSLIDKGQFWRLATSAFLHAN 183
T IL+AVNV +++ A ++ W +++D GQ R+ S FLH
Sbjct: 84 TYILMAVNVGIFLITAAQSRSIMQNQAGSKLFADWALFPPAVVD-GQIVRVLGSGFLHFG 142
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFG 242
I HL VN ++L IG E + G RY VYF S + SA F + GASGA+FG
Sbjct: 143 IIHLAVNMFALWVIGRDTELVLGRARYACVYFVSLLGGSAAVMLFQLGAVTAGASGAVFG 202
Query: 243 LVGSFAVFIMRHR 255
L+G+ AV ++R R
Sbjct: 203 LMGAQAVILLRLR 215
>gi|331656677|ref|ZP_08357639.1| outer membrane protein [Escherichia coli TA206]
gi|331054925|gb|EGI26934.1| outer membrane protein [Escherichia coli TA206]
Length = 502
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L ++G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|167756710|ref|ZP_02428837.1| hypothetical protein CLORAM_02248 [Clostridium ramosum DSM 1402]
gi|374627722|ref|ZP_09700124.1| hypothetical protein HMPREF0978_03444 [Coprobacillus sp.
8_2_54BFAA]
gi|167702885|gb|EDS17464.1| peptidase, S54 family [Clostridium ramosum DSM 1402]
gi|373912961|gb|EHQ44804.1| hypothetical protein HMPREF0978_03444 [Coprobacillus sp.
8_2_54BFAA]
Length = 214
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 7/95 (7%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF- 228
Q+WRL ++ F+H I H+ NCYSL ++G ME + G +RYL + +SA+A++ + F
Sbjct: 54 QYWRLISANFIHFGIMHIFCNCYSLVNLGSVMEYLLGMKRYLIILIASALATTILPTVFY 113
Query: 229 ------CNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
+S G SGAIFGL+G+ + +++
Sbjct: 114 ILTGNGASSIMGGISGAIFGLMGALLALAWKFKDV 148
>gi|224541443|ref|ZP_03681982.1| hypothetical protein CATMIT_00605 [Catenibacterium mitsuokai DSM
15897]
gi|224525635|gb|EEF94740.1| peptidase, S54 family [Catenibacterium mitsuokai DSM 15897]
Length = 183
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFATQDKL---LLWGAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCYS 193
+ + V VYI F+ +K + GA + ++G++WR TSAF+H HL +N Y
Sbjct: 3 ICIAVFVYINYFSKDNKTSEAMHLGALYTPYVKNRGEYWRFITSAFIHTEFLHLFMNMYC 62
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-------NSPAVGASGAIFGLVGS 246
+ +G E I GP RYL + S + SS +Y + NS +GASG +G +G+
Sbjct: 63 IFYLGRLFETILGPVRYLILVLVSIVMSSLATYYYSFRDSSVDNSITIGASGLFYGFLGA 122
>gi|302535555|ref|ZP_07287897.1| conserved hypothetical protein [Streptomyces sp. C]
gi|302444450|gb|EFL16266.1| conserved hypothetical protein [Streptomyces sp. C]
Length = 290
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 65/133 (48%), Gaps = 11/133 (8%)
Query: 134 TNILLAVNVLVYIAQFATQD---KLLLWGAKINSL------IDKGQFWRLATSAFLHANI 184
T IL+ +N V++A A L L G + I GQ+ RL TS FLH
Sbjct: 77 TKILIGINAAVFLAVLAMPGLAIGLELLGRYVEYYGAPEEGISTGQYHRLLTSVFLHVEW 136
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFG 242
H+ N +L IG +E G RYL +Y S + SA+ Y N+P +GASGA+ G
Sbjct: 137 WHIFGNMLALWVIGGPLEAALGRVRYLALYLLSGLGGSALVYLLTAPNTPTLGASGAVCG 196
Query: 243 LVGSFAVFIMRHR 255
L+G+ V R R
Sbjct: 197 LLGATVVLARRLR 209
>gi|404417227|ref|ZP_10999031.1| hypothetical protein SARL_05123 [Staphylococcus arlettae CVD059]
gi|403490425|gb|EJY95966.1| hypothetical protein SARL_05123 [Staphylococcus arlettae CVD059]
Length = 480
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 71/124 (57%), Gaps = 6/124 (4%)
Query: 134 TNILLAVNVLVYIAQFA-----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+ +NV++++ ++ KLL G ++ + G+++RL +S FLH N H++
Sbjct: 160 TYTLIGINVIIWLLMILFFNRFSELKLLDVGGLVHFNVVHGEWYRLISSIFLHYNFEHIL 219
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSF 247
+N SL G +E I G R L ++ S + ++ S F ++ +VGASGAIFGL+GS
Sbjct: 220 MNMLSLFIFGKIVESIVGHWRMLVIFLFSGLFANFASLSFNIDTISVGASGAIFGLIGSL 279
Query: 248 AVFI 251
F+
Sbjct: 280 FGFM 283
>gi|160935902|ref|ZP_02083276.1| hypothetical protein CLOBOL_00795 [Clostridium bolteae ATCC
BAA-613]
gi|158441144|gb|EDP18861.1| hypothetical protein CLOBOL_00795 [Clostridium bolteae ATCC
BAA-613]
Length = 206
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 89/171 (52%), Gaps = 13/171 (7%)
Query: 131 RQWTNILLA-VNVLVYI---AQFATQDKLLLW--GAKINS-LIDKGQFWRLATSAFLHAN 183
R + NI LA VNVLV++ A +T+D + + GA +I G+++RL T+ FLH
Sbjct: 9 RPYVNIALAAVNVLVFLYLEAIGSTEDGVFMVKHGAVFAPFVILGGEYYRLFTAMFLHFG 68
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-----CNSPAVGASG 238
++HL N L +G ME+ G +YL Y +S +A++++S S + GASG
Sbjct: 69 VSHLANNMLVLLVLGEKMERALGHIKYLIFYLASGVAANSISLAVQVRTGQASVSAGASG 128
Query: 239 AIFGLVGSFAVFIMRHRNILGG-GKEELQHLAKVIIFNMVCSAAFANIVKI 288
AIFG+VG I H L G +L + + +++ SA N+ I
Sbjct: 129 AIFGVVGGLVYVIAIHHGQLDGLTNRQLGFMVLLTLYHGFTSAGVDNMAHI 179
>gi|343496237|ref|ZP_08734340.1| rhomboid family protein [Vibrio nigripulchritudo ATCC 27043]
gi|342821484|gb|EGU56258.1| rhomboid family protein [Vibrio nigripulchritudo ATCC 27043]
Length = 360
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 74/133 (55%), Gaps = 13/133 (9%)
Query: 133 WTN-ILLAVNVLV---YIAQFATQDKLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
W N I++A+N ++ Y + T D ++ A + I G + W L T+ FLH ++ HL
Sbjct: 152 WCNWIIIALNCIIFSLYAFSYETTDWVIEHLAMTPADILAGRELWTLVTATFLHGDLMHL 211
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS----PAVGASGAIFGL 243
N Y L +G +E G ++YL +YF IA+S +S+ F N P+VGASGAI
Sbjct: 212 AGNMYFLYVVGDNIEDAVGHKKYLALYFFCGIAASLVSF-FSNMHGLIPSVGASGAI--- 267
Query: 244 VGSFAVFIMRHRN 256
G FA++++ R+
Sbjct: 268 AGFFAIYLLWFRH 280
>gi|227544150|ref|ZP_03974199.1| S54 family peptidase [Lactobacillus reuteri CF48-3A]
gi|338202576|ref|YP_004648721.1| rhomboid family integral membrane protein [Lactobacillus reuteri
SD2112]
gi|154705524|gb|ABS84188.1| rhomboid family protein [Lactobacillus reuteri]
gi|227185866|gb|EEI65937.1| S54 family peptidase [Lactobacillus reuteri CF48-3A]
gi|336447816|gb|AEI56431.1| rhomboid family integral membrane protein [Lactobacillus reuteri
SD2112]
Length = 219
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 65/118 (55%), Gaps = 2/118 (1%)
Query: 143 LVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTME 202
LVY LL GA+ LI +G++WRL + FLH ++HL+VN +L IG +E
Sbjct: 26 LVYAGGSTNTVTLLNMGARSTPLIREGEWWRLVSPVFLHVGLSHLVVNSVTLLYIGRYIE 85
Query: 203 KICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVF-IMRHRNIL 258
+ G R + +YF SA + S F S + GAS AIFGL G+F + + H N++
Sbjct: 86 EFFGHWRMVIIYFVSAFFGNLTSAVFMPSTVSAGASTAIFGLFGAFLMLGVCFHHNVI 143
>gi|357053297|ref|ZP_09114395.1| hypothetical protein HMPREF9467_01367 [Clostridium clostridioforme
2_1_49FAA]
gi|355385874|gb|EHG32920.1| hypothetical protein HMPREF9467_01367 [Clostridium clostridioforme
2_1_49FAA]
Length = 206
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 75/142 (52%), Gaps = 12/142 (8%)
Query: 131 RQWTNILLA-VNVLVYI---AQFATQDKLLLW--GAKINS-LIDKGQFWRLATSAFLHAN 183
R + NI LA VN LV++ A +T+D + + GA +I G+++RL T+ FLH
Sbjct: 9 RPYVNIALAAVNALVFLYLEAIGSTEDGVFMVKHGAVFAPFVILGGEYYRLFTAMFLHFG 68
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-----CNSPAVGASG 238
++HL N L +G MEK G +YL Y +S +A++ +S S + GASG
Sbjct: 69 VSHLANNMLVLLVLGEKMEKALGHIKYLIFYLASGVAANGISLAVQVRTGAASVSAGASG 128
Query: 239 AIFGLVGSFAVFIMRHRNILGG 260
AIFG+VG I H L G
Sbjct: 129 AIFGVVGGLVYVIAIHHGQLDG 150
>gi|325000791|ref|ZP_08121903.1| serine peptidase [Pseudonocardia sp. P1]
Length = 254
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 62/123 (50%), Gaps = 10/123 (8%)
Query: 137 LLAVNVLVYIAQFATQDKL------LLWGAKINSLID--KGQFWRLATSAFLHANIAHLM 188
L+AVNV V++ T L L+G + +D GQ WRL T+ FLH HL
Sbjct: 48 LIAVNVAVFVLTVVTAGSLNRNFDSPLFGLGALTPVDVADGQLWRLVTAGFLHIGPLHLA 107
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN--SPAVGASGAIFGLVGS 246
N ++L IG +E + G R+ VY S + SA N P GASGA+FGL+G+
Sbjct: 108 FNMFALWVIGREVEAVLGRARFTAVYGVSLLGGSAAVMLLSNPLGPTAGASGAVFGLMGA 167
Query: 247 FAV 249
V
Sbjct: 168 LFV 170
>gi|300927237|ref|ZP_07142969.1| peptidase, S54 family protein [Escherichia coli MS 182-1]
gi|301329188|ref|ZP_07222179.1| peptidase, S54 family protein [Escherichia coli MS 78-1]
gi|450211629|ref|ZP_21894406.1| rhomboid family protein [Escherichia coli O08]
gi|300416803|gb|EFK00114.1| peptidase, S54 family protein [Escherichia coli MS 182-1]
gi|300844476|gb|EFK72236.1| peptidase, S54 family protein [Escherichia coli MS 78-1]
gi|449322428|gb|EMD12420.1| rhomboid family protein [Escherichia coli O08]
Length = 625
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 68/120 (56%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G +E+I G R L ++ S + +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGGVVERILGKWRLLIIWLFSGVFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|167748326|ref|ZP_02420453.1| hypothetical protein ANACAC_03070 [Anaerostipes caccae DSM 14662]
gi|167652318|gb|EDR96447.1| peptidase, S54 family [Anaerostipes caccae DSM 14662]
Length = 280
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 72/140 (51%), Gaps = 11/140 (7%)
Query: 132 QWTNILLAVNVLVYIAQFATQDKLLLWGAKI-NSLIDKGQFWRLATSAFLHANIAHLMVN 190
Q T ++L +N+ +Y+ A ++L WGA +G+ +RL TS FLH HL N
Sbjct: 98 QATAVILTINIFMYLWS-AASTEILNWGALTWMHAFKQGELYRLVTSNFLHNGFDHLFNN 156
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS-----PAVGASGAIFGLVG 245
IG +E I G RY+ +Y + + S +S + + +VGASGAIFGL+G
Sbjct: 157 MIVFVLIGSRLEPIFGRARYVALYMGAGLCGSIVSAVYYMNMGEMVASVGASGAIFGLIG 216
Query: 246 SFAVFIMRHR----NILGGG 261
+ ++++R GGG
Sbjct: 217 AMLWILIKNRGYQKEFYGGG 236
>gi|363419988|ref|ZP_09308085.1| serine peptidase [Rhodococcus pyridinivorans AK37]
gi|359736660|gb|EHK85603.1| serine peptidase [Rhodococcus pyridinivorans AK37]
Length = 308
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 72/137 (52%), Gaps = 19/137 (13%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL-------------LWGAKINSLIDKGQFWRLATSAFL 180
T +L+A+NVLV+ A ++ LW I + G++ R+ S FL
Sbjct: 86 TYVLIALNVLVFGITAAQSGSVMTNEQGSALFLDWALWPPIIAA---HGEYIRILGSGFL 142
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASG 238
H + HL VN ++L IG E + G RYL VY S + SA + F + AV GASG
Sbjct: 143 HFGLLHLAVNMFALWVIGRDTELVLGRARYLSVYLVSILGGSA-AVMFMETGAVTAGASG 201
Query: 239 AIFGLVGSFAVFIMRHR 255
A+FGL+G+ AV ++R R
Sbjct: 202 AVFGLLGAQAVILLRLR 218
>gi|418886814|ref|ZP_13440962.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1150]
gi|377725767|gb|EHT49880.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1150]
Length = 314
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 68/114 (59%), Gaps = 4/114 (3%)
Query: 142 VLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTM 201
+++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N SL G +
Sbjct: 1 MILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIV 59
Query: 202 EKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMRH 254
E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F M +
Sbjct: 60 EAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFAMMY 111
>gi|417128656|ref|ZP_11975443.1| peptidase, S54 family [Escherichia coli 97.0246]
gi|386143612|gb|EIG90088.1| peptidase, S54 family [Escherichia coli 97.0246]
Length = 625
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH +++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHNSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G +E+I G R L V+ S + +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGGVVERILGKWRLLIVWLFSGVFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|344999051|ref|YP_004801905.1| Rhomboid family protein [Streptomyces sp. SirexAA-E]
gi|344314677|gb|AEN09365.1| Rhomboid family protein [Streptomyces sp. SirexAA-E]
Length = 304
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 82/180 (45%), Gaps = 33/180 (18%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLID----------------------KGQF 171
T L+A+N+L Y+ + + + +G L+D G++
Sbjct: 72 TYALMALNILAYVVEVVRSETVDRFGMLGAVLVDPAGGQYYYEGGTYPGYELTGVADGEW 131
Query: 172 WRLATSAFLHA------NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+RL T AFLH + HL+ N ++L ++G +E G RYL +Y SA+ S +
Sbjct: 132 YRLLTGAFLHLPPDTSFGVMHLVFNMFALWNLGRVVEGQLGRARYLALYLLSAVGGSVLV 191
Query: 226 YRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFAN 284
Y + AVGASGA+FGL SF V R LG + + + MV SAAF +
Sbjct: 192 YLVSPETTAVGASGAVFGLAASFYVINRR----LGRDMQAVNRFMAGFLLWMVISAAFTS 247
>gi|172038646|ref|YP_001805147.1| hypothetical protein cce_3733 [Cyanothece sp. ATCC 51142]
gi|354554015|ref|ZP_08973320.1| Peptidase S54, rhomboid domain protein [Cyanothece sp. ATCC 51472]
gi|171700100|gb|ACB53081.1| hypothetical protein cce_3733 [Cyanothece sp. ATCC 51142]
gi|353553694|gb|EHC23085.1| Peptidase S54, rhomboid domain protein [Cyanothece sp. ATCC 51472]
Length = 525
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 19/170 (11%)
Query: 132 QWTNILLAVNVLVYIAQ--------FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHAN 183
Q T L+ +N LV++A+ F T ++L GA + + KG+FWRL T+ FLH
Sbjct: 330 QITLCLIILNSLVFLAEIGFGGTENFKTLEQL---GALVPMFVWKGEFWRLITANFLHYG 386
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS-AMSY--RFCNSP---AVGAS 237
H + N L IG +E + +Y+ VYF S + S A SY + N VGAS
Sbjct: 387 WGHFLTNMLGLYIIGNLVESLSNKSKYIIVYFFSGVGSMFAFSYIALYANKVDYILVGAS 446
Query: 238 GAIFGLVGSFAVFIMRH--RNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
+I GL+GS +R +N ++ L + VI F ++ +
Sbjct: 447 ASIMGLLGSLTAIFLRKWLQNKSSINRKRLLIMVTVITFQLMSDLLIPQV 496
>gi|334880686|emb|CCB81452.1| integral membrane protein [Lactobacillus pentosus MP-10]
gi|339636895|emb|CCC15711.1| integral membrane protein [Lactobacillus pentosus IG1]
Length = 227
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL----WGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
T I+L + V V++ ++ D L GAK N I GQ+WR T FLH + H+ +
Sbjct: 15 TQIILGITVAVFLIEWLMGDGATLVFNAIGAKNNQAIAAGQWWRFITPMFLHMGLTHIAL 74
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
N + +G +E + G R L +Y I+ + MS+ + +VGAS A F L G+F
Sbjct: 75 NGVVIYFMGMQIEAMYGHWRMLALYMLGGISGNIMSFALSTNQSVGASTACFALFGAF 132
>gi|317472135|ref|ZP_07931467.1| rhomboid family protein [Anaerostipes sp. 3_2_56FAA]
gi|316900539|gb|EFV22521.1| rhomboid family protein [Anaerostipes sp. 3_2_56FAA]
Length = 309
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 73/140 (52%), Gaps = 11/140 (7%)
Query: 132 QWTNILLAVNVLVYIAQFATQDKLLLWGA-KINSLIDKGQFWRLATSAFLHANIAHLMVN 190
Q T ++L +N+ +Y+ A+ + +L WGA +G+ +RL TS FLH HL N
Sbjct: 127 QATAVILTINIFMYLWSAASTE-ILNWGALTWMHAFKQGELYRLVTSNFLHNGFDHLFNN 185
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS-----PAVGASGAIFGLVG 245
IG +E I G RY+ +Y + + S +S + + +VGASGAIFGL+G
Sbjct: 186 MIVFVLIGSRLEPIFGRARYVALYMGAGLCGSIVSAVYYMNMGEMVASVGASGAIFGLIG 245
Query: 246 SFAVFIMRHR----NILGGG 261
+ ++++R GGG
Sbjct: 246 AMLWILIKNRGYQKEFYGGG 265
>gi|385680095|ref|ZP_10054023.1| membrane protein [Amycolatopsis sp. ATCC 39116]
Length = 256
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 24/166 (14%)
Query: 134 TNILLAVNVLVYIAQFATQDKL------------LLWGAKINSLIDKGQFWRLATSAFLH 181
T IL+ +NVL Y+ + L +LW I + ++WRL S FLH
Sbjct: 30 TPILIVLNVLAYVVTVSQAGSLTRNDTAPLFGDGVLWPLAIAG---EDEWWRLVMSGFLH 86
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGA 239
HL VN +L +G ME + G R+ +Y S + + Y F + GASGA
Sbjct: 87 YGPIHLAVNMLALWILGRDMETLLGRVRFTVLYLVSLLGGAVAVYLFDGVDRGTAGASGA 146
Query: 240 IFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
I+GL+G+ V ++R R + I+ N++ + + NI
Sbjct: 147 IYGLLGAMLVAVIRLR-------LNPAYAIGTIVLNLIITVSLPNI 185
>gi|111020678|ref|YP_703650.1| rhomboid family protein [Rhodococcus jostii RHA1]
gi|110820208|gb|ABG95492.1| possible rhomboid family protein [Rhodococcus jostii RHA1]
Length = 305
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 69/133 (51%), Gaps = 12/133 (9%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL----------WGAKINSLIDKGQFWRLATSAFLHAN 183
T IL+A NV +++ A ++ W +++D GQ R+ S FLH
Sbjct: 84 TYILMAANVGIFLITAAQSRSIMQNQAGSKLFADWALFPPAVVD-GQIVRVLGSGFLHFG 142
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFG 242
I HL VN ++L IG E + G RY VYF+S + SA F + GASGA+FG
Sbjct: 143 IIHLAVNMFALWVIGRDTELVLGRARYACVYFASLLGGSAAVMLFQLGAVTAGASGAVFG 202
Query: 243 LVGSFAVFIMRHR 255
L+G+ AV ++R R
Sbjct: 203 LMGAQAVILLRLR 215
>gi|375138853|ref|YP_004999502.1| hypothetical protein [Mycobacterium rhodesiae NBB3]
gi|359819474|gb|AEV72287.1| putative membrane protein [Mycobacterium rhodesiae NBB3]
Length = 282
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 70/127 (55%), Gaps = 11/127 (8%)
Query: 134 TNILLAVNVLVYIAQFAT---QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T +L+AVNV ++ Q + Q L+L+ + + G+++RL +SAFLH H++ N
Sbjct: 72 TYVLIAVNVAMFALQMMSSELQRGLVLF----SPAVADGEWYRLISSAFLHYGPTHILFN 127
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFA 248
++L +GP +E G R+ +Y SA+ S + Y + GASGAIFGL G A
Sbjct: 128 MWALYVVGPPLEAALGRLRFASLYLVSALGGSVLVYLLSALGAQTAGASGAIFGLFG--A 185
Query: 249 VFIMRHR 255
F++ R
Sbjct: 186 TFVVGKR 192
>gi|116617786|ref|YP_818157.1| membrane-associated serine protease [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
gi|116096633|gb|ABJ61784.1| Membrane-associated serine protease [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
Length = 227
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 9/132 (6%)
Query: 134 TNILLAVNVLVYIAQFATQ-------DKLLLWGAKINSLID-KGQFWRLATSAFLHANIA 185
T I+ V V++ + + L+ GAK I K ++WRL T FLHA
Sbjct: 14 TTIIFLVTTFVFLIELVLSRGTTENSEFLINMGAKWGPYIQLKHEYWRLLTPVFLHAGFL 73
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLV 244
H++ N +L IGP +E+ G ++ G+YF I + SY +S +VGAS A+F +
Sbjct: 74 HIVTNMITLWFIGPLVERAFGSTKFFGLYFFGGIIGNIFSYLLAPSSVSVGASTALFAMF 133
Query: 245 GSFAVFIMRHRN 256
G ++ +R +
Sbjct: 134 GGLILYAIRFKE 145
>gi|378715572|ref|YP_005280461.1| rhomboid family protein [Gordonia polyisoprenivorans VH2]
gi|375750275|gb|AFA71095.1| rhomboid family protein [Gordonia polyisoprenivorans VH2]
Length = 302
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 9/131 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDKL-------LLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T L+A+NV+V+ LL G + + GQ+WRL T+ FLH ++ H
Sbjct: 78 TYTLIAINVVVFAYTIYAAHSFNVEVSGPLLHGELVRGNVFLGQYWRLLTAGFLHYSLIH 137
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA--MSYRFCNSPAVGASGAIFGLV 244
L VN SL +G +E G R++ VY ++ + SA M + + + GASGAI+GL+
Sbjct: 138 LAVNMISLYILGRDLEIALGIGRFVMVYMTALLGGSAAVMIAQSNEARSAGASGAIYGLM 197
Query: 245 GSFAVFIMRHR 255
G+ + ++R R
Sbjct: 198 GAMLIVVLRLR 208
>gi|237732716|ref|ZP_04563197.1| predicted protein [Mollicutes bacterium D7]
gi|229384211|gb|EEO34302.1| predicted protein [Coprobacillus sp. D7]
Length = 209
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 7/95 (7%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF- 228
Q+WRL ++ F+H I H+ NCYSL ++G ME + G +RYL + +SA+A++ + F
Sbjct: 54 QYWRLISANFIHFGIMHIFCNCYSLVNLGSVMEYLLGMKRYLIILIASALATTILPTVFY 113
Query: 229 ------CNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
+S G SGAIFGL+G+ + +++
Sbjct: 114 ILTGNGASSIMGGISGAIFGLMGALLALAWKFKDV 148
>gi|377831625|ref|ZP_09814595.1| hypothetical protein LBLM1_08570 [Lactobacillus mucosae LM1]
gi|377554419|gb|EHT16128.1| hypothetical protein LBLM1_08570 [Lactobacillus mucosae LM1]
Length = 220
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GA+ LI G++WRL T F+H + HL+VN +L IG +E + G R+L +Y
Sbjct: 37 LIEFGARYTPLIKAGEWWRLITPGFVHIGLTHLVVNSVTLYFIGMYIENLFGHWRFLAIY 96
Query: 215 FSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSF 247
S + + S F S + GAS IFGL G+F
Sbjct: 97 LVSTLMGNLASAVFLPQSISAGASTGIFGLFGAF 130
>gi|405354247|ref|ZP_11023627.1| putative membrane protein [Chondromyces apiculatus DSM 436]
gi|397092490|gb|EJJ23248.1| putative membrane protein [Myxococcus sp. (contaminant ex DSM 436)]
Length = 553
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
Query: 153 DKLLLWGAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
D LL WGAK L+ D GQ WRL T+ FLH ++ HL +N L + G +E++C R Y+
Sbjct: 61 DTLLRWGAKAGPLVVDAGQGWRLVTANFLHRDLLHLGLNLLVLLAAGSGLERLCRRRDYV 120
Query: 212 GVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNIL 258
V ++ +A+ A S + + +VGASG ++G VG+ V RHR L
Sbjct: 121 AVLAAAGLATMAGSLGWSGAVSVGASGMVYGCVGALLVLGRRHRTRL 167
>gi|347548722|ref|YP_004855050.1| hypothetical protein LIV_1288 [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|346981793|emb|CBW85766.1| Putative yqgP [Listeria ivanovii subsp. ivanovii PAM 55]
Length = 512
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR T FLH+ + HL N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFITPIFLHSGLIHLASNAVMLYIVGAWAERIYGKWRYVLIL 270
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
I + S+ + +VGAS A+F ++G+ ++ N+
Sbjct: 271 ILGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNV 313
>gi|256545972|ref|ZP_05473327.1| S54 (rhomboid) family peptidase [Anaerococcus vaginalis ATCC 51170]
gi|256398394|gb|EEU12016.1| S54 (rhomboid) family peptidase [Anaerococcus vaginalis ATCC 51170]
Length = 216
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 7/119 (5%)
Query: 134 TNILLAVNVLVYIAQFATQ-----DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T IL+ +N+LV+I T + LL + A + G++WRL F+H I HL+
Sbjct: 2 TRILMGINILVFILMTVTGGSENIENLLRFNAMSKIYVYYGEWWRLFCPIFIHIGIIHLL 61
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVG 245
+N Y LN++G E + G ++L +Y I + +Y F S + GAS +++GL G
Sbjct: 62 MNMYFLNNVGDEFESLYGSTKFLIIYLLCGIMGNLFTYAFGEVTSVSAGASTSLYGLFG 120
>gi|359419226|ref|ZP_09211185.1| putative rhomboid family protein [Gordonia araii NBRC 100433]
gi|358244841|dbj|GAB09254.1| putative rhomboid family protein [Gordonia araii NBRC 100433]
Length = 218
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF- 228
++WRL TS FLH +I H+ VN SL +G +E I G R+L VY + SA
Sbjct: 41 EYWRLLTSGFLHLSIMHIAVNMISLVLLGTIIEPILGTARFLLVYLVALFGGSAAVTLLS 100
Query: 229 -CNSPAVGASGAIFGLVGSFAVFIMRHR 255
N+ GASGAI+GL+G+ V +++ +
Sbjct: 101 GTNTATAGASGAIYGLMGAMLVIVLKFK 128
>gi|424919232|ref|ZP_18342596.1| putative membrane protein [Rhizobium leguminosarum bv. trifolii
WSM597]
gi|392855408|gb|EJB07929.1| putative membrane protein [Rhizobium leguminosarum bv. trifolii
WSM597]
Length = 579
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 14/137 (10%)
Query: 134 TNILLAVNVLVYIAQFA------------TQDKLLLWGAKINSLIDKGQFWRLATSAFLH 181
T LLAV V VY + A + L+L G S+++ ++WRL T+ F+H
Sbjct: 206 TYALLAVLVAVYAGELAFGVEASRAGSPSIRTLLMLGGTFRPSIVEGAEWWRLFTAPFMH 265
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGA 239
I HL NC+ L G E++ G R + ++F+SA+ S S N+ VGASG
Sbjct: 266 GGIVHLASNCFCLLMAGMLFERLIGWRWFAAIFFASALGGSIASVWINDVNTVGVGASGG 325
Query: 240 IFGLVGSFAVFIMRHRN 256
I GL + +R R+
Sbjct: 326 IVGLFAAVIAGSIRFRS 342
>gi|296332829|ref|ZP_06875289.1| hypothetical protein BSU6633_17110 [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305673175|ref|YP_003864847.1| hypothetical protein BSUW23_02400 [Bacillus subtilis subsp.
spizizenii str. W23]
gi|350264714|ref|YP_004876021.1| sporulation membrane protein/ endopeptidase YdcA [Bacillus subtilis
subsp. spizizenii TU-B-10]
gi|296150109|gb|EFG90998.1| hypothetical protein BSU6633_17110 [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305411419|gb|ADM36538.1| conserved hypothetical protein [Bacillus subtilis subsp. spizizenii
str. W23]
gi|349597601|gb|AEP85389.1| sporulation membrane protein and putative endopeptidase YdcA
[Bacillus subtilis subsp. spizizenii TU-B-10]
gi|407956158|dbj|BAM49398.1| hypothetical protein BEST7613_0467 [Bacillus subtilis BEST7613]
gi|407963429|dbj|BAM56668.1| hypothetical protein BEST7003_0467 [Bacillus subtilis BEST7003]
Length = 199
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ G++WRL T LHA HL+ N S+ P +E++ G R+L VY S I + +
Sbjct: 53 VANGEWWRLITPVLLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGT 112
Query: 226 YRFCNSPA----VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAA 281
Y P VGASGAIFGL G + ++ + ++ G+E + + ++ F ++ S
Sbjct: 113 Y--VTEPLDYVHVGASGAIFGLFGVYLFMVLFRKELI--GQEHSKMILTLLAFAVLMSFI 168
Query: 282 FANI 285
+NI
Sbjct: 169 NSNI 172
>gi|258650339|ref|YP_003199495.1| rhomboid family protein [Nakamurella multipartita DSM 44233]
gi|258553564|gb|ACV76506.1| Rhomboid family protein [Nakamurella multipartita DSM 44233]
Length = 292
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 68/125 (54%), Gaps = 12/125 (9%)
Query: 134 TNILLAVNVLVYI--------AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T L+AVN+ ++ A + +L L G I + + G++WRL TS FLH N+
Sbjct: 66 TFALIAVNLAFFLVTALQSRSAMDLSYSELYLRGGLIPAEVASGEYWRLLTSGFLHGNLV 125
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA---VGASGAIFG 242
HL N SL +G +E+I G R L +Y S + +S F ++P +GASGA++G
Sbjct: 126 HLATNMLSLYWLGIPLERILGRGRMLTIYLISLLGASVSVLLF-SAPVSLTIGASGAVYG 184
Query: 243 LVGSF 247
L+G+
Sbjct: 185 LMGAL 189
>gi|191168690|ref|ZP_03030470.1| peptidase, S54 (rhomboid) family [Escherichia coli B7A]
gi|309795475|ref|ZP_07689892.1| peptidase, S54 family protein [Escherichia coli MS 145-7]
gi|190901282|gb|EDV61051.1| peptidase, S54 (rhomboid) family [Escherichia coli B7A]
gi|308120850|gb|EFO58112.1| peptidase, S54 family protein [Escherichia coli MS 145-7]
Length = 625
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYFAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G +E+I G R L V+ S + +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGGVVERILGKWRLLIVWLFSGVFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|157159255|ref|YP_001461827.1| S54 family peptidase [Escherichia coli E24377A]
gi|157081285|gb|ABV20993.1| peptidase, S54 (rhomboid) family [Escherichia coli E24377A]
Length = 625
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYFAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G +E+I G R L V+ S + +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGGVVERILGKWRLLIVWLFSGVFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|397733720|ref|ZP_10500434.1| rhomboid family protein [Rhodococcus sp. JVH1]
gi|396930518|gb|EJI97713.1| rhomboid family protein [Rhodococcus sp. JVH1]
Length = 305
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 69/133 (51%), Gaps = 12/133 (9%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL----------WGAKINSLIDKGQFWRLATSAFLHAN 183
T IL+A NV +++ A ++ W +++D GQ R+ S FLH
Sbjct: 84 TYILMAANVGIFLITAAQSRSIMQNQAGSKLFADWALFPPAVVD-GQIVRVLGSGFLHFG 142
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFG 242
I HL VN ++L IG E + G RY VYF+S + SA F + GASGA+FG
Sbjct: 143 IIHLAVNMFALWVIGRDTELVLGRARYACVYFASLLGGSAAVMLFQLGAVTAGASGAVFG 202
Query: 243 LVGSFAVFIMRHR 255
L+G+ AV ++R R
Sbjct: 203 LMGAQAVILLRLR 215
>gi|392948666|ref|ZP_10314270.1| membrane-bound protease, rhomboid family [Lactobacillus pentosus
KCA1]
gi|392436103|gb|EIW14023.1| membrane-bound protease, rhomboid family [Lactobacillus pentosus
KCA1]
Length = 218
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL----WGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
T I+L + V V++ ++ D L GAK N I GQ+WR T FLH + H+ +
Sbjct: 6 TQIILGITVAVFLIEWLIGDGATLVFNAIGAKNNQAIAAGQWWRFITPMFLHMGLTHIAL 65
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
N + +G +E + G R L +Y I+ + MS+ + +VGAS A F L G+F
Sbjct: 66 NGVVIYFMGMQIEAMYGHWRMLALYMLGGISGNIMSFALSTNQSVGASTACFALFGAF 123
>gi|443633959|ref|ZP_21118135.1| hypothetical protein BSI_32140 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|443346155|gb|ELS60216.1| hypothetical protein BSI_32140 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
Length = 199
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ G++WRL T LHA HL+ N S+ P +E++ G R+L VY S I + +
Sbjct: 53 VANGEWWRLITPVLLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGT 112
Query: 226 YRFCNSPA----VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAA 281
Y P VGASGAIFGL G + ++ + ++ G+E + + ++ F ++ S
Sbjct: 113 Y--VTEPLDYVHVGASGAIFGLFGVYLFMVLFRKELI--GQEHSKMILTLLAFAVLMSFI 168
Query: 282 FANI 285
+NI
Sbjct: 169 NSNI 172
>gi|239986984|ref|ZP_04707648.1| hypothetical protein SrosN1_06732 [Streptomyces roseosporus NRRL
11379]
gi|291443931|ref|ZP_06583321.1| rhomboid family protein [Streptomyces roseosporus NRRL 15998]
gi|291346878|gb|EFE73782.1| rhomboid family protein [Streptomyces roseosporus NRRL 15998]
Length = 303
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 84/180 (46%), Gaps = 33/180 (18%)
Query: 134 TNILLAVNVLVYIAQFA---TQDKLLLWGAKIN-------------------SLIDKGQF 171
T +L+A+NVLVY+ + D+ + GA + + I G++
Sbjct: 72 TYVLMALNVLVYLGEVVRPEIVDRFAVLGAVLTGPDGEQYYYRGDTFQGYELTGIADGEW 131
Query: 172 WRLATSAFLHA------NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+RL T AFLH + HL+ N ++L +IG +E G RYL +Y SA+ S +
Sbjct: 132 YRLVTGAFLHLPPDASFGVMHLLFNMFALWNIGRAVEGQLGRARYLALYLLSAVGGSVLV 191
Query: 226 YRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFAN 284
Y ++ VGASGA+FGL ++ V HR LG + + MV SA F +
Sbjct: 192 YLLAPDTSTVGASGAVFGLAAAYWVI---HRR-LGHDMAAVNRFMAGFLIWMVLSALFTS 247
>gi|417288734|ref|ZP_12076019.1| peptidase, S54 family [Escherichia coli TW07793]
gi|386247526|gb|EII93699.1| peptidase, S54 family [Escherichia coli TW07793]
Length = 625
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L ++G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|417688423|ref|ZP_12337667.1| rhomboid family protein [Shigella boydii 5216-82]
gi|332094328|gb|EGI99379.1| rhomboid family protein [Shigella boydii 5216-82]
Length = 625
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH +++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHNSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G +E+I G R L V+ S + +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGGVVERILGKWRLLIVWLFSGVFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|416287203|ref|ZP_11648807.1| Putative membrane protein [Shigella boydii ATCC 9905]
gi|320178447|gb|EFW53415.1| Putative membrane protein [Shigella boydii ATCC 9905]
Length = 625
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH +++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHNSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G +E+I G R L V+ S + +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGGVVERILGKWRLLIVWLFSGVFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|312965097|ref|ZP_07779334.1| rhomboid family protein [Escherichia coli 2362-75]
gi|312290188|gb|EFR18071.1| rhomboid family protein [Escherichia coli 2362-75]
Length = 625
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L ++G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|215485689|ref|YP_002328120.1| hypothetical protein E2348C_0549 [Escherichia coli O127:H6 str.
E2348/69]
gi|215263761|emb|CAS08097.1| predicted protein [Escherichia coli O127:H6 str. E2348/69]
Length = 625
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L ++G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|227432339|ref|ZP_03914331.1| S54 family peptidase [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
gi|381336263|ref|YP_005174038.1| membrane-associated serine protease [Leuconostoc mesenteroides
subsp. mesenteroides J18]
gi|227351860|gb|EEJ42094.1| S54 family peptidase [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
gi|356644229|gb|AET30072.1| membrane-associated serine protease [Leuconostoc mesenteroides
subsp. mesenteroides J18]
Length = 227
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 9/132 (6%)
Query: 134 TNILLAVNVLVYIAQFATQ-------DKLLLWGAKINSLID-KGQFWRLATSAFLHANIA 185
T I+ V V++ + + L+ GAK I K ++WRL T FLHA
Sbjct: 14 TTIIFLVTTFVFLIELVLSRGTTENSEFLINMGAKWGPYIQLKHEYWRLLTPVFLHAGFL 73
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLV 244
H++ N +L IGP +E+ G ++ G+YF I + SY +S +VGAS A+F +
Sbjct: 74 HIVTNMITLWFIGPLVERAFGSAKFFGLYFFGGIIGNIFSYLLAPSSVSVGASTALFAMF 133
Query: 245 GSFAVFIMRHRN 256
G ++ +R +
Sbjct: 134 GGLILYAIRFKE 145
>gi|118619868|ref|YP_908200.1| serine protease [Mycobacterium ulcerans Agy99]
gi|118571978|gb|ABL06729.1| rhomboid family serine protease [Mycobacterium ulcerans Agy99]
Length = 254
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ GQ +RL TSAF+H HL+ N ++L +GP +E G R+ G+Y SA+ S +
Sbjct: 71 VADGQLYRLVTSAFMHYGRLHLVFNMWALYVVGPPLEMWLGRLRFGGLYALSALGGSVLV 130
Query: 226 YRFC--NSPAVGASGAIFGLVGSFAVFIMRHR 255
Y N+ GASGAIFGL G A F++ R
Sbjct: 131 YLIAPLNTATAGASGAIFGLFG--ATFVVAKR 160
>gi|419012186|ref|ZP_13559551.1| rhomboid family protein [Escherichia coli DEC1D]
gi|377862951|gb|EHU27758.1| rhomboid family protein [Escherichia coli DEC1D]
Length = 625
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L ++G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|390630603|ref|ZP_10258582.1| Membrane-associated serine protease [Weissella confusa LBAE C39-2]
gi|390484160|emb|CCF30930.1| Membrane-associated serine protease [Weissella confusa LBAE C39-2]
Length = 233
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 10/123 (8%)
Query: 134 TNILLAVNVLVY-----IAQFATQDKLLLW--GAKINSLI-DKGQFWRLATSAFLHANIA 185
T+ L+A V+VY IAQ T +L+ GA+ ++ G++WRL T+ FLH +
Sbjct: 15 TSALVAFMVVVYLWEALIAQSFTISSRVLYETGAQFGPIVLHYGEWWRLLTAGFLHVTAS 74
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGL 243
HL+ N +L IG +E GP R+L ++ ++ I+ + MS F N + GASG +FGL
Sbjct: 75 HLIFNMITLYFIGRLLELEIGPWRFLILFLTTVISGNLMSLAFGAMNVISAGASGGVFGL 134
Query: 244 VGS 246
G+
Sbjct: 135 FGA 137
>gi|417754419|ref|ZP_12402514.1| rhomboid family protein [Escherichia coli DEC2B]
gi|419000808|ref|ZP_13548367.1| rhomboid family protein [Escherichia coli DEC1B]
gi|419006320|ref|ZP_13553776.1| rhomboid family protein [Escherichia coli DEC1C]
gi|419017090|ref|ZP_13564416.1| rhomboid family protein [Escherichia coli DEC1E]
gi|419022782|ref|ZP_13570024.1| rhomboid family protein [Escherichia coli DEC2A]
gi|419027591|ref|ZP_13574790.1| rhomboid family protein [Escherichia coli DEC2C]
gi|419033082|ref|ZP_13580180.1| rhomboid family protein [Escherichia coli DEC2D]
gi|419038371|ref|ZP_13585431.1| rhomboid family protein [Escherichia coli DEC2E]
gi|377851121|gb|EHU16076.1| rhomboid family protein [Escherichia coli DEC1C]
gi|377853455|gb|EHU18354.1| rhomboid family protein [Escherichia coli DEC1B]
gi|377867064|gb|EHU31828.1| rhomboid family protein [Escherichia coli DEC1E]
gi|377868420|gb|EHU33164.1| rhomboid family protein [Escherichia coli DEC2A]
gi|377879365|gb|EHU43938.1| rhomboid family protein [Escherichia coli DEC2B]
gi|377883501|gb|EHU48019.1| rhomboid family protein [Escherichia coli DEC2D]
gi|377885474|gb|EHU49969.1| rhomboid family protein [Escherichia coli DEC2C]
gi|377898615|gb|EHU62975.1| rhomboid family protein [Escherichia coli DEC2E]
Length = 625
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L ++G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|325663211|ref|ZP_08151661.1| hypothetical protein HMPREF0490_02402 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325470665|gb|EGC73895.1| hypothetical protein HMPREF0490_02402 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 209
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 76/137 (55%), Gaps = 11/137 (8%)
Query: 134 TNILLAVNVLVYIA---QFATQDKLLLW--GAK-INSLIDKGQFWRLATSAFLHANIAHL 187
T ++ +N+ +++ Q T+D + ++ GA + S++++G+++RL TS FLH HL
Sbjct: 10 TIAMIVINITIFLVLSFQGMTEDGIFMFHHGAMYVPSMLEEGEYYRLFTSMFLHFGFEHL 69
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-----NSPAVGASGAIFG 242
M N + L IG +E G +YL VY S + + +S + + GASGAIFG
Sbjct: 70 MNNMFILGVIGWNLELEIGKWKYLAVYLLSGLMGNLLSAWMDIQTGEYAISAGASGAIFG 129
Query: 243 LVGSFAVFIMRHRNILG 259
++G+ +R+R +G
Sbjct: 130 VIGALFYVALRNRGRIG 146
>gi|425298821|ref|ZP_18688871.1| hypothetical protein EC07798_0755 [Escherichia coli 07798]
gi|408221824|gb|EKI45757.1| hypothetical protein EC07798_0755 [Escherichia coli 07798]
Length = 625
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L ++G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|320528438|ref|ZP_08029600.1| peptidase, S54 family protein [Solobacterium moorei F0204]
gi|320131352|gb|EFW23920.1| peptidase, S54 family protein [Solobacterium moorei F0204]
Length = 266
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
Query: 141 NVLVYIAQFATQDKL---LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSI 197
V V+I F + + +L GA + G+FWRL T+ F+H ++ HL +N +L S+
Sbjct: 18 GVWVFIQLFPSDSTITNAILIGAFYKPFVLAGEFWRLLTAGFVHVHLWHLAMNMMALLSL 77
Query: 198 GPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMR 253
G E + G +RYL + S + S NS VG SG I+GL+ ++ I+R
Sbjct: 78 GKIFEPLLGMKRYLMILIPSIVVGSLFVLTSPENSFVVGLSGGIYGLLAAYVTLILR 134
>gi|117927224|ref|YP_871775.1| rhomboid family protein [Acidothermus cellulolyticus 11B]
gi|117647687|gb|ABK51789.1| Rhomboid family protein [Acidothermus cellulolyticus 11B]
Length = 287
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 84/162 (51%), Gaps = 17/162 (10%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWG--------AKINSLIDKGQFWRLATSAFLHANIA 185
T +L+A+N +V++ + + L + A + + G+F+RL T+ FLHA++
Sbjct: 78 TYLLIAINAVVFLLEQVSPRFELRYALIPGETGFAHPYAGVAGGEFYRLITAMFLHASVL 137
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGL 243
H++ N ++L +G +E + G R+L +YF + + S Y F S +GASGAIFGL
Sbjct: 138 HIVFNMWALLVVGAPLEALLGRLRFLVLYFLAGLGGSTAVYLFAPRGSATLGASGAIFGL 197
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
+ VF R N +++ + VI+ N+ + + +
Sbjct: 198 FAALFVF-GRRLNF------DIRPIGLVIVINLALTFVLSGV 232
>gi|373859824|ref|ZP_09602547.1| Rhomboid family protein [Bacillus sp. 1NLA3E]
gi|372450467|gb|EHP23955.1| Rhomboid family protein [Bacillus sp. 1NLA3E]
Length = 244
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 68/128 (53%), Gaps = 4/128 (3%)
Query: 160 AKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
A +N I +G++WR T FLH+ AH++ N +SL GP +EK+ G ++ +Y +
Sbjct: 47 AGVNLYIAEGEYWRFITPIFLHSGFAHMLFNSFSLVLFGPALEKMLGKTKFTLLYLAGGT 106
Query: 220 ASSAMSYRF--CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMV 277
++ +Y + VG+SGAIF L G + I+ +++L ++ Q + + + +V
Sbjct: 107 LANVATYLVNPLSYSHVGSSGAIFALFGFYLAIILFKKHLL--SRQNSQIVLTITVIGLV 164
Query: 278 CSAAFANI 285
+ N+
Sbjct: 165 MTFIQPNV 172
>gi|377562581|ref|ZP_09791962.1| hypothetical protein GOOTI_266_00160 [Gordonia otitidis NBRC
100426]
gi|377520256|dbj|GAB37127.1| hypothetical protein GOOTI_266_00160 [Gordonia otitidis NBRC
100426]
Length = 212
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
G + + + G++WRL T+ FLH +AH+ +N SL +G +E G RYL VYF +
Sbjct: 24 GDLVRAYVADGEYWRLLTAGFLHFTVAHIALNMISLYILGRDLEAALGLGRYLMVYFIAL 83
Query: 219 IASSA--MSYRFCNSPAVGASGAIFGLVG 245
SA M + N + GASGAI+GL+G
Sbjct: 84 FGGSAAVMLFEAANVRSAGASGAIYGLMG 112
>gi|418995635|ref|ZP_13543249.1| rhomboid family protein [Escherichia coli DEC1A]
gi|377849025|gb|EHU14001.1| rhomboid family protein [Escherichia coli DEC1A]
Length = 199
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L ++G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|386319193|ref|YP_006015356.1| rhomboid family protein [Staphylococcus pseudintermedius ED99]
gi|323464364|gb|ADX76517.1| rhomboid family protein [Staphylococcus pseudintermedius ED99]
Length = 479
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 70/128 (54%), Gaps = 6/128 (4%)
Query: 134 TNILLAVNVLVY--IAQFA---TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T ++A+NVL++ + F T +++ GA + + G+++RL TS FLH HL+
Sbjct: 159 TYAVVAINVLIWLIVTWFTPHHTDYEIINLGALAHFNVVHGEWYRLITSMFLHIEFQHLL 218
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSF 247
+N SL G +E GP + LG Y S I + +S S ++GASGAIFGL+G+
Sbjct: 219 LNMLSLFIFGKLVEAFIGPLKMLGTYILSGIIGNLISLALITTSLSLGASGAIFGLMGAL 278
Query: 248 AVFIMRHR 255
++ R
Sbjct: 279 IALMIISR 286
>gi|319892596|ref|YP_004149471.1| membrane peptidase [Staphylococcus pseudintermedius HKU10-03]
gi|317162292|gb|ADV05835.1| Putative membrane peptidase, contains TPR repeat domain protein
[Staphylococcus pseudintermedius HKU10-03]
Length = 479
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 70/128 (54%), Gaps = 6/128 (4%)
Query: 134 TNILLAVNVLVY--IAQFA---TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T ++A+NVL++ + F T +++ GA + + G+++RL TS FLH HL+
Sbjct: 159 TYAVVAINVLIWLIVTWFTPHHTDYEIINLGALAHFNVVHGEWYRLITSMFLHIEFQHLL 218
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSF 247
+N SL G +E GP + LG Y S I + +S S ++GASGAIFGL+G+
Sbjct: 219 LNMLSLFIFGKLVEAFIGPLKMLGTYILSGIIGNLISLALITTSLSLGASGAIFGLMGAL 278
Query: 248 AVFIMRHR 255
++ R
Sbjct: 279 IALMIISR 286
>gi|284047014|ref|YP_003397354.1| rhomboid family protein [Conexibacter woesei DSM 14684]
gi|283951235|gb|ADB53979.1| Rhomboid family protein [Conexibacter woesei DSM 14684]
Length = 228
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 67/132 (50%), Gaps = 8/132 (6%)
Query: 135 NILLAVNVLVYIAQFA------TQDKLLLWGAKINSL-IDKGQFWRLATSAFLHANIAHL 187
+L+A+NV + Q A T D L +N +D G ++R+ TSAFLHAN AHL
Sbjct: 25 GVLVALNVGAFAIQLASSPFDDTLDGSLAEHGGLNGWEVDHGDWYRIFTSAFLHANAAHL 84
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGS 246
N +L +G + GP R + VY + + S+ F + VGASGAIFGL G
Sbjct: 85 FGNLVALVILGGVLTLAAGPLRMVLVYATGLLGSAFSVLAFAPETLTVGASGAIFGLAGG 144
Query: 247 FAVFIMRHRNIL 258
V R R +L
Sbjct: 145 ALVVGWRQRRVL 156
>gi|282882140|ref|ZP_06290781.1| rhomboid family integral membrane protein [Peptoniphilus lacrimalis
315-B]
gi|281298170|gb|EFA90625.1| rhomboid family integral membrane protein [Peptoniphilus lacrimalis
315-B]
Length = 237
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 68/127 (53%), Gaps = 7/127 (5%)
Query: 137 LLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
L+ +N++V++ D L+ + A L+ +GQ+WRL F+H AHL++N
Sbjct: 24 LITINIIVFLIMTLCGGSQNIDVLVKFNAMNKILVYQGQWWRLICPTFIHIGFAHLLMNM 83
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSFAV 249
Y L +G E + G RYL +Y + + + +SY F N + GAS +++GL G
Sbjct: 84 YFLYIVGSIFENLYGSLRYLIIYIACGLMGNFVSYAFSNPYTISAGASTSLYGLFGLAIG 143
Query: 250 FIMRHRN 256
++R+++
Sbjct: 144 LMIRYKD 150
>gi|300693980|ref|YP_003749953.1| peptidase s54, rhomboid family [Ralstonia solanacearum PSI07]
gi|299076017|emb|CBJ35328.1| putative peptidase S54, rhomboid family [Ralstonia solanacearum
PSI07]
gi|344169739|emb|CCA82101.1| putative peptidase S54, rhomboid family [blood disease bacterium
R229]
Length = 197
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 72/137 (52%), Gaps = 14/137 (10%)
Query: 135 NILLAVNVLVYIAQFATQDKLL----LWGAKINSLIDKGQF--WRLATSAFLHANIAHLM 188
N L+ NV+V+IA+ D LL LW + G F W+L T AFLHA++ HL+
Sbjct: 3 NSLILANVIVFIAELFAGDTLLRSFALWPPGAAGIGADGGFSPWQLVTYAFLHASVPHLV 62
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-------YRFCNSPAVGASGAIF 241
N + + G +E+ G R GV + +++ S+A + + F P VGASG +F
Sbjct: 63 FNMFGMFMFGRDVERALG-RVRTGVLYLASVLSAAFTQIAVVGFFTFPAGPIVGASGGVF 121
Query: 242 GLVGSFAVFIMRHRNIL 258
GL+ ++AV R +L
Sbjct: 122 GLLLAYAVLFPRRMILL 138
>gi|405979365|ref|ZP_11037709.1| hypothetical protein HMPREF9241_00432 [Actinomyces turicensis
ACS-279-V-Col4]
gi|404392746|gb|EJZ87804.1| hypothetical protein HMPREF9241_00432 [Actinomyces turicensis
ACS-279-V-Col4]
Length = 284
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 70/132 (53%), Gaps = 15/132 (11%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKI--NSLIDKGQFWRLATSAFLHANIAHLMVNC 191
T L+ +NV ++I F L L G + N + Q WR T+AFLH+ H+ N
Sbjct: 70 TYTLIGINVALFILSFV----LPLVGNWLFFNPAVGYRQVWRFLTTAFLHSGFMHIAFNM 125
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-------NSPAVGASGAIFGLV 244
+L S+G +E++ G RYL VY SAI +S + + VGASGA+FGL
Sbjct: 126 LALYSVGVELEQVLGRTRYLSVYLLSAIGASLFVLAWVLIQPSSLGTVTVGASGAVFGLF 185
Query: 245 GSFAVFIMRHRN 256
G A+F+++ ++
Sbjct: 186 G--AMFVLQKQS 195
>gi|284162630|ref|YP_003401253.1| rhomboid family protein [Archaeoglobus profundus DSM 5631]
gi|284012627|gb|ADB58580.1| Rhomboid family protein [Archaeoglobus profundus DSM 5631]
Length = 225
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 74/139 (53%), Gaps = 22/139 (15%)
Query: 133 WTNILLAVNVLVYIAQFAT-----------------QDKLLLWGAKINSLIDKGQFWRLA 175
W N ++A+ +L+Y+A+ T +D ++ + + + W++
Sbjct: 17 WNNTIIAICILIYLAKVLTGLLGIYAIIRMPFGVTYRDNIVDYLLALFPINVLSMPWQII 76
Query: 176 TSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS--SAMSYRFCNS-- 231
TS F+HA+ HL +N + L G +E+ G R+YL ++F+S IA + + Y F +
Sbjct: 77 TSIFVHADFWHLFINMFVLFFFGNELERRLGERKYLIIFFASGIAGNLAYLVYAFLTNPF 136
Query: 232 -PAVGASGAIFGLVGSFAV 249
PA+GAS AIFG++G+ A+
Sbjct: 137 IPAMGASAAIFGVMGALAI 155
>gi|190892260|ref|YP_001978802.1| hypothetical protein RHECIAT_CH0002672 [Rhizobium etli CIAT 652]
gi|190697539|gb|ACE91624.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
Length = 579
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 71/151 (47%), Gaps = 19/151 (12%)
Query: 120 LDTARTNLFIGRQWTNILLAVNVLVYIAQFA------------TQDKLLLWGAKINSLID 167
D AR +F T LLA V VY + A + L+L G S+++
Sbjct: 197 FDGARYPVF-----TYALLAALVAVYAGELAFGVEASRAGSPSIRTLLMLGGTFRPSIVE 251
Query: 168 KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYR 227
++WRL T+ F+H I HL NC+ L G E++ G R + ++F+SA+ S S
Sbjct: 252 GAEWWRLFTAPFMHGGIIHLASNCFCLLVAGMLFERLIGWRWFAAIFFASALGGSIASVW 311
Query: 228 F--CNSPAVGASGAIFGLVGSFAVFIMRHRN 256
N+ VGASG I GL + +R R+
Sbjct: 312 INDVNTVGVGASGGIVGLFAAVIAGSIRFRS 342
>gi|57640721|ref|YP_183199.1| integral membrane protein rhomboid-like protein [Thermococcus
kodakarensis KOD1]
gi|57159045|dbj|BAD84975.1| integral membrane protein Rhomboid homolog [Thermococcus
kodakarensis KOD1]
Length = 206
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 13/125 (10%)
Query: 134 TNILLAVNVLVYIAQFATQDK---------LLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T L +NV VY+ + L L G ++++ G +W+L T+ F+H NI
Sbjct: 14 TFTLFLINVAVYVVEAVLSGGNFLSIRGSVLALLGQWNYAVLNYGYWWQLFTAMFVHVNI 73
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP---AVGASGAIF 241
H+ N Y L ++G +E++ GPRR + Y S + + ++ F P + GASGA+F
Sbjct: 74 IHIFFNMYFLLTMGRQLERVLGPRRVVMTYIVSGLVGNVLT-LFLKPPMTVSAGASGALF 132
Query: 242 GLVGS 246
G+VG+
Sbjct: 133 GIVGA 137
>gi|417099012|ref|ZP_11959759.1| hypothetical protein RHECNPAF_2000020 [Rhizobium etli CNPAF512]
gi|327192676|gb|EGE59614.1| hypothetical protein RHECNPAF_2000020 [Rhizobium etli CNPAF512]
Length = 579
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 71/151 (47%), Gaps = 19/151 (12%)
Query: 120 LDTARTNLFIGRQWTNILLAVNVLVYIAQFA------------TQDKLLLWGAKINSLID 167
D AR +F T LLA V VY + A + L+L G S+++
Sbjct: 197 FDGARYPVF-----TYALLAALVAVYAGELAFGVEASRAGSPSIRTLLMLGGTFRPSIVE 251
Query: 168 KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYR 227
++WRL T+ F+H I HL NC+ L G E++ G R + ++F+SA+ S S
Sbjct: 252 GAEWWRLFTAPFMHGGIIHLASNCFCLLMAGMLFERLIGWRWFAAIFFASALGGSIASVW 311
Query: 228 F--CNSPAVGASGAIFGLVGSFAVFIMRHRN 256
N+ VGASG I GL + +R R+
Sbjct: 312 INDVNTVGVGASGGIVGLFAAVIAGSIRFRS 342
>gi|296111906|ref|YP_003622288.1| small hydrophobic molecule transporter protein [Leuconostoc kimchii
IMSNU 11154]
gi|339490819|ref|YP_004705324.1| small hydrophobic molecule transporter protein [Leuconostoc sp. C2]
gi|295833438|gb|ADG41319.1| small hydrophobic molecule transporter protein, putative
[Leuconostoc kimchii IMSNU 11154]
gi|338852491|gb|AEJ30701.1| small hydrophobic molecule transporter protein, putative
[Leuconostoc sp. C2]
Length = 229
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 15/132 (11%)
Query: 137 LLAVNVLVYIAQFA-----TQDKLLL------WGAKINSLIDKGQFWRLATSAFLHANIA 185
+L + VL++I + T D LL WG I D +WRL T FLHA
Sbjct: 18 ILTLTVLIFILELVIGGGQTDDGQLLVVLGAKWGPYIKLHHD---YWRLVTPLFLHAGFM 74
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLV 244
H+ N +L IGP +E G R++L +Y S + + SY F + +VGAS A+FGL
Sbjct: 75 HVFTNMLTLWFIGPLVESSFGSRKFLILYLFSGVIGNIFSYLFAPLTVSVGASSALFGLF 134
Query: 245 GSFAVFIMRHRN 256
G ++ ++ ++
Sbjct: 135 GGMILYAIQFKD 146
>gi|417139548|ref|ZP_11982970.1| peptidase, S54 family [Escherichia coli 97.0259]
gi|417307136|ref|ZP_12094013.1| hypothetical protein PPECC33_5850 [Escherichia coli PCN033]
gi|338771313|gb|EGP26056.1| hypothetical protein PPECC33_5850 [Escherichia coli PCN033]
gi|386157276|gb|EIH13618.1| peptidase, S54 family [Escherichia coli 97.0259]
Length = 625
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLLSSVFLHSSFPHLLINMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L V+ S + +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGAVAERILGKWRLLIVWLFSGVFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|218511093|ref|ZP_03508971.1| hypothetical protein RetlB5_29129 [Rhizobium etli Brasil 5]
Length = 466
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 71/151 (47%), Gaps = 19/151 (12%)
Query: 120 LDTARTNLFIGRQWTNILLAVNVLVYIAQFA------------TQDKLLLWGAKINSLID 167
D AR +F T LLA V VY + A + L+L G S+++
Sbjct: 84 FDGARYPVF-----TYALLAALVAVYAGELAFGVEASRAGSPSIRTLLMLGGTFRPSIVE 138
Query: 168 KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYR 227
++WRL T+ F+H I HL NC+ L G E++ G R + ++F+SA+ S S
Sbjct: 139 GAEWWRLFTAPFMHGGIIHLASNCFCLLVAGMLFERLIGWRWFAAIFFASALGGSIASVW 198
Query: 228 F--CNSPAVGASGAIFGLVGSFAVFIMRHRN 256
N+ VGASG I GL + +R R+
Sbjct: 199 INDVNTVGVGASGGIVGLFAAVIAGSIRFRS 229
>gi|73662516|ref|YP_301297.1| hypothetical protein SSP1207 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72495031|dbj|BAE18352.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 485
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 136 ILLAVNVLVYIAQFATQD---KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
I+L V + +++ F + KLL G ++ + G+++RL TS FLH N H+++N
Sbjct: 163 IILNVVIWLFMVLFLNRSSDLKLLDIGGLVHFNVVHGEWYRLITSIFLHYNFEHILMNML 222
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R +Y + + + S F ++ +VGASGAIFGL+G+ F+
Sbjct: 223 SLFIFGKIVESIVGHWRMFVIYLVAGLFGNFASLSFNTDTVSVGASGAIFGLIGAIFTFM 282
>gi|390961805|ref|YP_006425639.1| integral membrane protein rhomboid-like protein [Thermococcus sp.
CL1]
gi|390520113|gb|AFL95845.1| integral membrane protein rhomboid-like protein [Thermococcus sp.
CL1]
Length = 203
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 10/126 (7%)
Query: 134 TNILLAVNVLVYIAQ-------FATQ-DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T L +NV VYI + F+ D L G +++ G +W+L T+ F+H I
Sbjct: 14 TFTLFLINVAVYIVEAILSGNPFSISIDVLARLGQWNYAVLSYGWWWQLVTAMFVHVGIL 73
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGL 243
H+ N Y L +G +E I GP+R + VY S +A + ++ NS + GASGA+FG+
Sbjct: 74 HIGFNMYFLLMMGRQLEGIIGPKRLVMVYLVSGLAGNLLTLFLLPANSVSAGASGALFGI 133
Query: 244 VGSFAV 249
VG+ +
Sbjct: 134 VGTLII 139
>gi|374710297|ref|ZP_09714731.1| hypothetical protein SinuC_08740 [Sporolactobacillus inulinus CASD]
Length = 204
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 86/165 (52%), Gaps = 16/165 (9%)
Query: 134 TNILLAVNVLVYI-----------AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
T ILL +NVL+Y+ +FA G+ +++++ G +W+L T FLH
Sbjct: 18 TAILLGINVLLYLLFVLTGTWRLAPEFAFTIFNFAAGSN-DAILNGGAWWQLVTPIFLHI 76
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS--SAMSYRFCNSPAVGASGAI 240
+H++ N +SL GP +E++ G RYL + S+ + + +A+ GASGA+
Sbjct: 77 TFSHILFNAFSLYIFGPALEQLIGRFRYLIAFLSTGVIANIAALFLEPIGFVHYGASGAL 136
Query: 241 FGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
FGL+G + ++ R + +++ + +++ +++ S ANI
Sbjct: 137 FGLLGIYIYLVVFRREFI--SRQDQTIIFVIVLVSLISSFFSANI 179
>gi|291438500|ref|ZP_06577890.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
gi|291341395|gb|EFE68351.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
Length = 296
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 78/159 (49%), Gaps = 16/159 (10%)
Query: 110 KNSGHEGTSHLD---TARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLL-------LWG 159
+GH T+ L T + R T ILL +N+ V++A + LL +W
Sbjct: 59 SGTGHAPTASLPRTIAGGTVVADPRLVTKILLGINLAVFVA-VQIRPSLLRDLYLIGVWP 117
Query: 160 AKI---NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFS 216
+ G+++RL TS F H I H+ N L +G +E+ G RYL +Y
Sbjct: 118 PAPFLPTEGVADGEWYRLFTSMFTHEAIWHIAFNMLGLWWLGGPLEQALGRARYLALYLI 177
Query: 217 SAIASSAMSYRFCN--SPAVGASGAIFGLVGSFAVFIMR 253
S +A SA++Y + + +GASGAIFGL G+ AV + R
Sbjct: 178 SGLAGSALTYLLASGTTATLGASGAIFGLFGAMAVLMRR 216
>gi|352518163|ref|YP_004887480.1| rhomboid family protein [Tetragenococcus halophilus NBRC 12172]
gi|348602270|dbj|BAK95316.1| rhomboid family protein [Tetragenococcus halophilus NBRC 12172]
Length = 228
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 11/136 (8%)
Query: 131 RQWTN------ILLAVNVLVYIAQFATQDKLLLWGAKINS-LIDKGQFWRLATSAFLHAN 183
R+W N L + +LV+I + + GA ++ Q+WR T F+H
Sbjct: 7 RRWLNQPIITYFFLGIQILVFIISYLFPGLIESQGAMFGPFVVYYSQYWRFITPIFIHYG 66
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV---GASGAI 240
+ H VN L +G +E + G RY +Y S A + +S+ F NSP V G+S A+
Sbjct: 67 LMHFAVNSIVLYFMGQRLEAMYGHMRYFFIYLLSGAAGNLLSFAF-NSPGVQSAGSSTAL 125
Query: 241 FGLVGSFAVFIMRHRN 256
FGL G+F V + ++N
Sbjct: 126 FGLFGAFVVLGVHYKN 141
>gi|331676317|ref|ZP_08377029.1| outer membrane protein [Escherichia coli H591]
gi|417600998|ref|ZP_12251581.1| rhomboid family protein [Escherichia coli STEC_94C]
gi|331076375|gb|EGI47657.1| outer membrane protein [Escherichia coli H591]
gi|345353483|gb|EGW85716.1| rhomboid family protein [Escherichia coli STEC_94C]
Length = 265
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLFSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L ++ S + +S Y +S +VGASGAI G+ G+
Sbjct: 83 ALLVVGAVAERILGKWRLLIIWLFSGVFGGLISACYALRDSDQIVISVGASGAIMGIAGA 142
>gi|224134785|ref|XP_002321905.1| predicted protein [Populus trichocarpa]
gi|222868901|gb|EEF06032.1| predicted protein [Populus trichocarpa]
Length = 333
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
++DK Q WRL T +LHA I HL+ N SL IG +E+ G R VY S S +
Sbjct: 113 VVDKHQGWRLITCIWLHAGIIHLLANMLSLVFIGIRLEQQFGFVRIGVVYLLSGFGGSVL 172
Query: 225 SYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNM 276
S F N+ +VGASGA+FGL+G+ ++ + +I L L +I+ N+
Sbjct: 173 SSLFIRNNISVGASGALFGLLGAMLSELITNWSIYTNKAAALLTLLVIIVINL 225
>gi|425737376|ref|ZP_18855649.1| hypothetical protein C273_03260 [Staphylococcus massiliensis S46]
gi|425482724|gb|EKU49880.1| hypothetical protein C273_03260 [Staphylococcus massiliensis S46]
Length = 484
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Query: 151 TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRY 210
T KL+ GA + + G++ RL TS FLH N H++ N SL G +E I G R
Sbjct: 182 TDLKLIDLGALAHFNVVHGEWHRLITSMFLHLNFEHILFNMLSLFIFGKLLESILGSWRM 241
Query: 211 LGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGS 246
GVY S I + ++ F ++ ++GASGAIFGL+GS
Sbjct: 242 FGVYMLSGIIGNLVTLAFSPDTFSLGASGAIFGLIGS 278
>gi|260665468|ref|ZP_05866315.1| membrane-associated serine protease [Lactobacillus jensenii
SJ-7A-US]
gi|260560736|gb|EEX26713.1| membrane-associated serine protease [Lactobacillus jensenii
SJ-7A-US]
Length = 215
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 159 GAKIN-SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
GA+ N ++I GQ+WRL T+ FLH + HL+VNC +L +G +E + G R+L +Y +
Sbjct: 32 GAQFNPAIIILGQWWRLFTAQFLHIGLLHLVVNCVTLFYMGQYLEPMLGHVRFLIIYLLA 91
Query: 218 AIASSAMSYRFCNSPAV--GASGAIFGLVGS 246
+ + M+ + AV GAS A+FGL G+
Sbjct: 92 GVGGNLMTLALGSDNAVSAGASTALFGLFGA 122
>gi|418576075|ref|ZP_13140221.1| hypothetical protein SSME_12770 [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
gi|379325137|gb|EHY92269.1| hypothetical protein SSME_12770 [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
Length = 489
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 136 ILLAVNVLVYIAQFATQD---KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
I+L V + +++ F + KLL G ++ + G+++RL TS FLH N H+++N
Sbjct: 167 IILNVVIWLFMVLFLNRSSDLKLLDVGGLVHFNVVHGEWYRLITSIFLHYNFEHILMNML 226
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R +Y + + + S F ++ +VGASGAIFGL+G+ F+
Sbjct: 227 SLFIFGKIVESIVGHWRMFVIYLVAGLFGNFASLSFNTDTVSVGASGAIFGLIGAIFTFM 286
>gi|423721476|ref|ZP_17695658.1| rhomboid family protein [Geobacillus thermoglucosidans TNO-09.020]
gi|383365527|gb|EID42822.1| rhomboid family protein [Geobacillus thermoglucosidans TNO-09.020]
Length = 204
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 68/132 (51%), Gaps = 15/132 (11%)
Query: 157 LWGAKI--NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
LW I N+ I KG++WR T LH H+++N SL GP +E + G ++L +Y
Sbjct: 42 LWEKMIGFNAAIKKGEYWRFVTPLILHVRFEHMVINSISLILFGPALENMLGKGKFLILY 101
Query: 215 FSSAIASSAMSYRFCNSPAV----GASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK 270
S I ++ + F PA+ GASG+IFGL G + R+I+ E QH
Sbjct: 102 IGSGIFANVAT--FFLLPAMYSHAGASGSIFGLFGMYGYLATFRRDII-----EAQH--A 152
Query: 271 VIIFNMVCSAAF 282
++F ++C + F
Sbjct: 153 RLLFAVLCVSLF 164
>gi|238854484|ref|ZP_04644823.1| rhomboid protease GluP [Lactobacillus jensenii 269-3]
gi|313471846|ref|ZP_07812338.1| rhomboid family protein [Lactobacillus jensenii 1153]
gi|238832911|gb|EEQ25209.1| rhomboid protease GluP [Lactobacillus jensenii 269-3]
gi|313449012|gb|EEQ68240.2| rhomboid family protein [Lactobacillus jensenii 1153]
Length = 229
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 159 GAKIN-SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
GA+ N ++I GQ+WRL T+ FLH + HL+VNC +L +G +E + G R+L +Y +
Sbjct: 46 GAQFNPAIIILGQWWRLFTAQFLHIGLLHLVVNCVTLFYMGQYLEPMLGHVRFLIIYLLA 105
Query: 218 AIASSAMSYRFCNSPAV--GASGAIFGLVGS 246
+ + M+ + AV GAS A+FGL G+
Sbjct: 106 GVGGNLMTLALGSDNAVSAGASTALFGLFGA 136
>gi|398307565|ref|ZP_10511151.1| sporulation membrane protein/ endopeptidase YdcA [Bacillus
vallismortis DV1-F-3]
Length = 199
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 4/122 (3%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ G++WRL T LHA HL+ N S+ P +E++ G R+L VY S I + +
Sbjct: 53 VANGEWWRLITPVLLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGT 112
Query: 226 Y--RFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFA 283
Y + VGASGAIFGL G + ++ + ++ G+E + + ++ F ++ S +
Sbjct: 113 YVAEPLDYVHVGASGAIFGLFGVYLYMVVFRKELI--GREHSKMILTLLAFAVLMSLINS 170
Query: 284 NI 285
NI
Sbjct: 171 NI 172
>gi|337283825|ref|YP_004623299.1| Peptidase [Pyrococcus yayanosii CH1]
gi|334899759|gb|AEH24027.1| Peptidase, putative [Pyrococcus yayanosii CH1]
Length = 198
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 65/114 (57%), Gaps = 4/114 (3%)
Query: 137 LLAVNVLVYIAQFATQ-DKLLLWGAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCYSL 194
LL + LV+I + D ++ A+IN L+ GQ+WRL T+ F+H H +N + L
Sbjct: 18 LLTIIALVFIYELIVGFDTAIVQLAQINLLVFYAGQWWRLVTAIFVHMGFIHFALNTFWL 77
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGS 246
+G +E I G +R+L V+F SAI + +S + + GASG +FG+VG+
Sbjct: 78 FYLGMDLEGIVGSKRFLLVFFLSAIVGNVLSLFTLPLDVASGGASGGLFGIVGA 131
>gi|430756886|ref|YP_007210796.1| hypothetical protein A7A1_1394 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|430021406|gb|AGA22012.1| Hypothetical protein YdcA [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 199
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 11/159 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKI---NSLIDKGQFWRLATSAFLHANIAHLMVN 190
+LA+ ++++ ++LW + N + G++WRL T LHA HL+ N
Sbjct: 18 VTFILALQAVLWLFFSLPAHSVMLWRDTVTGYNLGVANGEWWRLITPILLHAGFTHLLFN 77
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA----VGASGAIFGLVGS 246
S+ P +E++ G R+L VY S I + +Y P VGASGAIFGL G
Sbjct: 78 SMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGTY--VTEPLDYVHVGASGAIFGLFGV 135
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
+ +F++ RN L G+E + + ++ F ++ S +NI
Sbjct: 136 Y-LFMVLFRNEL-IGQEHSKMIITLLAFAVLMSFINSNI 172
>gi|300931592|ref|ZP_07146904.1| peptidase, S54 family protein [Escherichia coli MS 187-1]
gi|300460616|gb|EFK24109.1| peptidase, S54 family protein [Escherichia coli MS 187-1]
Length = 283
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLSLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L ++ S + +S Y +S +VGASGAI G+ G+
Sbjct: 83 ALLVVGAVTERILGKWRLLIIWLFSGVFGGLISACYALRDSDQIVISVGASGAIMGIAGA 142
>gi|432859392|ref|ZP_20085463.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE146]
gi|431408031|gb|ELG91228.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE146]
Length = 625
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFPHLLINMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L V+ S + +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGAVAERILGKWRLLIVWLFSGVFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|160892518|ref|ZP_02073308.1| hypothetical protein CLOL250_00047 [Clostridium sp. L2-50]
gi|156865559|gb|EDO58990.1| peptidase, S54 family [Clostridium sp. L2-50]
Length = 338
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 89/194 (45%), Gaps = 26/194 (13%)
Query: 134 TNILLAVNVLVYIAQFATQD-------KLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T IL+ +N+LV+IA T+D + +L L++K Q++RL TS F H ++ H
Sbjct: 147 TPILVLLNILVFIAYVYTRDAYGYSFLEEILTDNLRYVLVEK-QYYRLLTSMFFHFSLTH 205
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-----NSPAVGASGAIF 241
L+ N L ++G +E + G +Y+ VY I +S S C A GASGAI
Sbjct: 206 LLSNMVVLIALGARVEYLLGKVKYICVYLFCGIVASVCSIVSCYMGNFYEYAGGASGAIC 265
Query: 242 GLVGSFAVFIMRHRNILGGGK------EELQHLAKVIIFNMVCSAAFANIVKIES--RHT 293
GL+G VF G GK ++L L+ + I N S N I
Sbjct: 266 GLMGILIVFAF-----FGKGKISDISLKDLIFLSVITILNGYVSEGIDNAAHIGGLIAGL 320
Query: 294 LTGETCYFIDPSKQ 307
TG C +I KQ
Sbjct: 321 FTGLLCAYICSKKQ 334
>gi|313679165|ref|YP_004056904.1| rhomboid family protein [Oceanithermus profundus DSM 14977]
gi|313151880|gb|ADR35731.1| Rhomboid family protein [Oceanithermus profundus DSM 14977]
Length = 224
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 62/124 (50%), Gaps = 10/124 (8%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDK-------GQFWRLATSAFLHANIAH 186
T +L+A NVLV+ Q + + W + K G+F R+ TS FLH H
Sbjct: 17 TRLLIAANVLVFFWQLSLGPEGFRWAVNAYGFVPKFFFADPAGEFGRIFTSMFLHGGFEH 76
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS---PAVGASGAIFGL 243
++ N + L GP +E G RYL VY + I ++ + F P +GASGAI G+
Sbjct: 77 ILGNMWFLWIFGPAVEARLGGGRYLLVYLLAGIGAALVEALFLPGSTVPMIGASGAISGV 136
Query: 244 VGSF 247
+G++
Sbjct: 137 LGAY 140
>gi|261402576|ref|YP_003246800.1| rhomboid family protein [Methanocaldococcus vulcanius M7]
gi|261369569|gb|ACX72318.1| Rhomboid family protein [Methanocaldococcus vulcanius M7]
Length = 222
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 52/83 (62%), Gaps = 5/83 (6%)
Query: 172 WRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS 231
W+L TS F+HA I HL++N + L G +E++ G ++Y+ V+ S I + +C+
Sbjct: 54 WQLITSIFMHATITHLLLNMFVLFFFGTYLERLIGAKKYILVFLISGIVGNLAYILYCHI 113
Query: 232 -----PAVGASGAIFGLVGSFAV 249
P+VG+SGAIFG++G+ A+
Sbjct: 114 TGSYLPSVGSSGAIFGVMGALAI 136
>gi|344175451|emb|CCA88130.1| putative peptidase S54, rhomboid family [Ralstonia syzygii R24]
Length = 197
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 70/136 (51%), Gaps = 12/136 (8%)
Query: 135 NILLAVNVLVYIAQFATQDKLL----LWGAKINSLIDKGQF--WRLATSAFLHANIAHLM 188
N L+ NV+V++A+ D LL LW + G F W+L T AFLHA++ HL+
Sbjct: 3 NSLIVANVIVFVAELFAGDTLLRSFALWPPGAAGIGADGGFSPWQLVTYAFLHASVPHLV 62
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS------YRFCNSPAVGASGAIFG 242
N + + G +E+ G R +Y +S ++++ + F P VGASG +FG
Sbjct: 63 FNMFGMFMFGRDVERALGRARTGALYLASVLSAAFTQMAVVGLFTFPAGPIVGASGGVFG 122
Query: 243 LVGSFAVFIMRHRNIL 258
L+ ++AV R +L
Sbjct: 123 LLLAYAVLFPRRMILL 138
>gi|288916640|ref|ZP_06411015.1| Rhomboid family protein [Frankia sp. EUN1f]
gi|288351895|gb|EFC86097.1| Rhomboid family protein [Frankia sp. EUN1f]
Length = 208
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF- 228
Q++R +AFLH N H++VN Y+L +G +E + G R +G++ + A+ + +SY
Sbjct: 42 QYYRFVAAAFLHGNFLHILVNLYALFIMGHQLEAVVGRLRLIGLFLAGAVGGNVLSYVVN 101
Query: 229 -CNSPAVGASGAIFGLVGSFAVFIMRHR 255
+ ++GAS AIFG G+F V R R
Sbjct: 102 GLETSSLGASTAIFGFFGAFYVIARRMR 129
>gi|21222264|ref|NP_628043.1| hypothetical protein SCO3855 [Streptomyces coelicolor A3(2)]
gi|289770532|ref|ZP_06529910.1| conserved hypothetical protein [Streptomyces lividans TK24]
gi|5102807|emb|CAB45222.1| putative membrane protein [Streptomyces coelicolor A3(2)]
gi|289700731|gb|EFD68160.1| conserved hypothetical protein [Streptomyces lividans TK24]
Length = 297
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 69/132 (52%), Gaps = 12/132 (9%)
Query: 134 TNILLAVNVLVYIAQFAT-----QDKLLL--WGAKI---NSLIDKGQFWRLATSAFLHAN 183
T IL+ +NV V+IA A D +L+ W + +G+++RL T+ F H
Sbjct: 87 TKILIGINVAVFIAVQALPSSFLSDMVLIGRWPPAPFVPTEGVAEGEWYRLVTTMFTHEE 146
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN--SPAVGASGAIF 241
I H+ N SL +G +E G RYL +Y S +A S ++Y + + +GASGAIF
Sbjct: 147 IWHIGFNMISLWFLGGPLEAALGRARYLALYLVSGLAGSVLAYLLASPTTATLGASGAIF 206
Query: 242 GLVGSFAVFIMR 253
GL G+ A + R
Sbjct: 207 GLFGATAALVRR 218
>gi|345000844|ref|YP_004803698.1| Rhomboid family protein [Streptomyces sp. SirexAA-E]
gi|344316470|gb|AEN11158.1| Rhomboid family protein [Streptomyces sp. SirexAA-E]
Length = 299
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 68/115 (59%), Gaps = 11/115 (9%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ +GQ++RL TS FLH + H+ N L +G +E G RYL +Y S +A SA++
Sbjct: 130 VAEGQWYRLFTSMFLHQEVWHIAFNMLGLWWLGGPLEAALGRVRYLALYLLSGLAGSALT 189
Query: 226 YRFCNSPA---VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMV 277
Y + PA +GASGA+FGL+G+ AV +MR N +++ + +++ N++
Sbjct: 190 YAV-SDPAQGSLGASGAVFGLLGATAV-LMRRMNY------DMRPVIALLVVNLI 236
>gi|238922477|ref|YP_002935990.1| hypothetical protein EUBREC_0051 [Eubacterium rectale ATCC 33656]
gi|238874149|gb|ACR73856.1| hypothetical protein EUBREC_0051 [Eubacterium rectale ATCC 33656]
Length = 192
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
GA I GQ+WRL TS F+H + H++ N L ++G +EK G + L + S
Sbjct: 32 GAMYPEYIKDGQYWRLFTSMFMHFGLMHILNNMVVLGAVGQIVEKAMGHVKLLITFLVSG 91
Query: 219 IASSAMSY---RFCNSPAV--GASGAIFGLVGSFAVFIMRHRNILGG 260
+ S +SY + N AV GASGAIFGLVG+ ++ +R G
Sbjct: 92 MCGSVLSYIVMLYNNDYAVSAGASGAIFGLVGALVWIVIANRGFYEG 138
>gi|398309567|ref|ZP_10513041.1| sporulation membrane protein/ endopeptidase YdcA [Bacillus
mojavensis RO-H-1]
Length = 199
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 8/120 (6%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ G++WRL T FLHA HL+ N S+ P +E++ G R+L VY S + + +
Sbjct: 53 VANGEWWRLVTPIFLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGMIGNIGT 112
Query: 226 YRFCNSPA----VGASGAIFGLVGSFAVFIMRHRNILG--GGKEELQHLAKVIIFNMVCS 279
Y P VGASGAIFGL G + ++ + ++G K L LA ++ + + S
Sbjct: 113 Y--FTEPLDYLHVGASGAIFGLFGVYLFMVLFRKELIGQDNSKMILTLLAFAVLMSFINS 170
>gi|183980331|ref|YP_001848622.1| serine protease [Mycobacterium marinum M]
gi|183173657|gb|ACC38767.1| rhomboid family serine protease [Mycobacterium marinum M]
Length = 289
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ GQ +RL TSAF+H HL+ N ++L +GP +E G R+ G+Y SA+ S +
Sbjct: 106 VADGQLYRLVTSAFMHYGTLHLVFNMWALYIVGPPLEMWLGRLRFGGLYALSALGGSVLV 165
Query: 226 YRFC--NSPAVGASGAIFGLVGSFAVFIMRHR 255
Y N+ GASGAIFGL G A F++ R
Sbjct: 166 YLIAPLNTATAGASGAIFGLFG--ATFVVAKR 195
>gi|330470718|ref|YP_004408461.1| rhomboid family protein [Verrucosispora maris AB-18-032]
gi|328813689|gb|AEB47861.1| rhomboid family protein [Verrucosispora maris AB-18-032]
Length = 269
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 32/152 (21%)
Query: 134 TNILLAVNVLVYIAQFATQ-------------------DKLLLWGAKINSL--------- 165
T L+A+NVL+ + A+ L WGA +
Sbjct: 40 TKALIAINVLIMLVSIASDRGGDAAAGGTGFGGLMGGSTPLTEWGAVLGRAMFLDGSIGG 99
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ +GQ++RL T+ FLH I HL++N ++L +G ++E + GP R+ +YF + +
Sbjct: 100 VAEGQWYRLVTAMFLHYGILHLLLNMWALWVLGQSLEAVLGPLRFAALYFIAGFGGNVAV 159
Query: 226 YRFC--NSPAVGASGAIFGLVGSFAVFIMRHR 255
Y F N + GAS AIFGL A+F++ R
Sbjct: 160 YVFSPPNQMSAGASTAIFGLFA--AIFVIMRR 189
>gi|432529994|ref|ZP_19767037.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE233]
gi|431057070|gb|ELD66548.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE233]
Length = 625
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+ +G E+I G R L ++ S + +S Y +S +VGASGAI G+ G+
Sbjct: 83 AFLVVGAVAERILGKWRLLIIWLFSGVFGGLISACYALRDSEQIVISVGASGAIMGIAGA 142
>gi|300814558|ref|ZP_07094812.1| peptidase, S54 (rhomboid) family protein [Peptoniphilus sp. oral
taxon 836 str. F0141]
gi|300511326|gb|EFK38572.1| peptidase, S54 (rhomboid) family protein [Peptoniphilus sp. oral
taxon 836 str. F0141]
Length = 237
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 68/127 (53%), Gaps = 7/127 (5%)
Query: 137 LLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
L+ +N++V++ D L+ + A L+ +GQ+WRL F+H AHL++N
Sbjct: 24 LITINIIVFLIMTLCGGSQNIDVLVKFNAMNKILVYQGQWWRLICPIFIHIGFAHLLMNM 83
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSFAV 249
Y L +G E + G RYL +Y + + + +SY F N + GAS +++GL G
Sbjct: 84 YFLYIVGSIFENLYGSLRYLIIYIACGLMGNFVSYAFSNPYTISAGASTSLYGLFGLAIG 143
Query: 250 FIMRHRN 256
++R+++
Sbjct: 144 LMIRYKD 150
>gi|218549768|ref|YP_002383559.1| hypothetical protein EFER_2447 [Escherichia fergusonii ATCC 35469]
gi|218357309|emb|CAQ89944.1| conserved hypothetical protein; putative membrane protein
[Escherichia fergusonii ATCC 35469]
Length = 645
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 66/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 43 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFSHLLMNMF 102
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 103 ALLVVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 162
>gi|333371980|ref|ZP_08463918.1| rhomboid protease GluP [Desmospora sp. 8437]
gi|332975161|gb|EGK12063.1| rhomboid protease GluP [Desmospora sp. 8437]
Length = 215
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 155 LLLWGAKINS-LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGV 213
LL +GA N+ L+ G++WRL T FLH I H + N +SL +GP +E + G R++ +
Sbjct: 61 LLRFGALENTALLIDGEWWRLVTPVFLHIGITHFLFNSFSLYLLGPQLEWLFGRWRFIAL 120
Query: 214 YFSSAIASS-AMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRN 256
Y + I + A Y + GASGAI+GL+G + + R
Sbjct: 121 YLLTGIMGNLATVYLGEVGISAGASGAIYGLLGVYVYLFLFRRG 164
>gi|422015063|ref|ZP_16361669.1| hypothetical protein OOA_09928 [Providencia burhodogranariea DSM
19968]
gi|414100115|gb|EKT61738.1| hypothetical protein OOA_09928 [Providencia burhodogranariea DSM
19968]
Length = 291
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 72/152 (47%), Gaps = 29/152 (19%)
Query: 134 TNILLAVNVLVYIAQ--FAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T IL+ +N+ +Y+ Q FA+ +D LLL+GA + L G +WR S LH+N H
Sbjct: 25 TLILVLLNIGIYLYQLSFASPLESREDNLLLFGANVYQLSLTGDWWRYPISMVLHSNSVH 84
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-----YRFCNSP--------- 232
L NC +L IG E+ G R L +Y S I ++ S Y N+
Sbjct: 85 LGFNCLALFVIGIECERAYGKFRLLAIYIISGIGAALFSAYWQYYETLNAANSSNNVWQM 144
Query: 233 --------AVGASGAIFGLVGSFAVFIMRHRN 256
VGASGAI GL + +++++ N
Sbjct: 145 DSTIYITIGVGASGAIMGLAAASVIYLLKAIN 176
>gi|226362918|ref|YP_002780698.1| rhomboid family protein [Rhodococcus opacus B4]
gi|226241405|dbj|BAH51753.1| rhomboid family protein [Rhodococcus opacus B4]
Length = 306
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 70/133 (52%), Gaps = 12/133 (9%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL----------WGAKINSLIDKGQFWRLATSAFLHAN 183
T IL+A NV +++ A ++ W +++D GQ R+ S FLH
Sbjct: 85 TYILMAANVGIFLITAAQSRSIMQNQAGSTLFADWALFPPAVVD-GQLVRVIGSGFLHFG 143
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFG 242
+ HL VN ++L IG E + G RY VYF+S + SA F ++ GASGA+FG
Sbjct: 144 LIHLAVNMFALWIIGRDTELVLGRARYACVYFASILGGSAAVMLFQLHAVTAGASGAVFG 203
Query: 243 LVGSFAVFIMRHR 255
L+G+ AV ++R R
Sbjct: 204 LMGAQAVILLRLR 216
>gi|422330928|ref|ZP_16411945.1| 40-residue YVTN family beta-propeller [Escherichia coli 4_1_47FAA]
gi|373248177|gb|EHP67609.1| 40-residue YVTN family beta-propeller [Escherichia coli 4_1_47FAA]
Length = 467
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEDVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFPHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L V+ S + +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGAVAERILGKWRLLIVWLFSGVFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|432769512|ref|ZP_20003867.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE50]
gi|432960155|ref|ZP_20150361.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE202]
gi|433061907|ref|ZP_20248866.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE125]
gi|431318193|gb|ELG05960.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE50]
gi|431478264|gb|ELH58013.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE202]
gi|431587577|gb|ELI58950.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE125]
Length = 460
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEDVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFPHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L V+ S + +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGAVAERILGKWRLLIVWLFSGVFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|300920527|ref|ZP_07136953.1| peptidase, S54 family protein [Escherichia coli MS 115-1]
gi|432532817|ref|ZP_19769815.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE234]
gi|300412466|gb|EFJ95776.1| peptidase, S54 family protein [Escherichia coli MS 115-1]
gi|431063700|gb|ELD72933.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE234]
Length = 625
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+ +G E+I G R L ++ S + +S Y +S +VGASGAI G+ G+
Sbjct: 83 AFLVVGAVAERILGKWRLLIIWLFSGVFGGLISACYALRDSEQIVISVGASGAIMGIAGA 142
>gi|421593641|ref|ZP_16038177.1| hypothetical protein RCCGEPOP_30149 [Rhizobium sp. Pop5]
gi|403700367|gb|EJZ17554.1| hypothetical protein RCCGEPOP_30149 [Rhizobium sp. Pop5]
Length = 439
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 74/147 (50%), Gaps = 22/147 (14%)
Query: 120 LDTARTNLFIGRQWTNILLAVNVLVYIAQFA------------TQDKLLLWGAKINSLID 167
L+ AR +F T LLAV + VY + A + +L G +++
Sbjct: 57 LNNARYPVF-----TYALLAVLIAVYAGELAFGVEPSEAGSPTIRTLWMLGGTFRQNIVG 111
Query: 168 KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYR 227
G++WRL T+ F+H +I HL +NC +L G E++ G R + ++F+SA+ S S
Sbjct: 112 DGEWWRLFTAPFMHGSIIHLALNCVALWVAGRLFERLIGWRWFAAIFFASALGGSIASVW 171
Query: 228 F--CNSPAVGASGAIFGLVGSFAVFIM 252
N+ VGASG G+VG FA I+
Sbjct: 172 INDANTVGVGASG---GIVGLFAAVIV 195
>gi|323450009|gb|EGB05893.1| hypothetical protein AURANDRAFT_9027 [Aureococcus anophagefferens]
Length = 77
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 48/74 (64%)
Query: 152 QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
Q +LL G K LI GQ+WRLAT LHA+ AHL+VN SL ++G ++E+ G ++ L
Sbjct: 4 QPQLLTLGCKSAPLIGAGQWWRLATPMLLHASPAHLIVNMISLRNVGRSLERAYGAKKTL 63
Query: 212 GVYFSSAIASSAMS 225
VY +S IA + +S
Sbjct: 64 VVYVASGIAGNLLS 77
>gi|16077528|ref|NP_388342.1| hypothetical protein BSU04610 [Bacillus subtilis subsp. subtilis
str. 168]
gi|221308284|ref|ZP_03590131.1| hypothetical protein Bsubs1_02613 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312606|ref|ZP_03594411.1| hypothetical protein BsubsN3_02589 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221317529|ref|ZP_03598823.1| hypothetical protein BsubsJ_02548 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221321805|ref|ZP_03603099.1| hypothetical protein BsubsS_02619 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|321314135|ref|YP_004206422.1| hypothetical protein BSn5_13935 [Bacillus subtilis BSn5]
gi|402774706|ref|YP_006628650.1| protein YdcA [Bacillus subtilis QB928]
gi|452916522|ref|ZP_21965145.1| rhomboid family protein [Bacillus subtilis MB73/2]
gi|81345920|sp|P96617.1|YDCA_BACSU RecName: Full=Putative rhomboid protease YdcA
gi|1881271|dbj|BAA19298.1| ydcA [Bacillus subtilis]
gi|2632761|emb|CAB12268.1| conserved hypothetical protein [Bacillus subtilis subsp. subtilis
str. 168]
gi|320020409|gb|ADV95395.1| hypothetical protein BSn5_13935 [Bacillus subtilis BSn5]
gi|402479891|gb|AFQ56400.1| YdcA [Bacillus subtilis QB928]
gi|452114662|gb|EME05061.1| rhomboid family protein [Bacillus subtilis MB73/2]
Length = 199
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 67/124 (54%), Gaps = 8/124 (6%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ G++WRL T LHA HL+ N S+ P +E++ G R+L VY S I + +
Sbjct: 53 VANGEWWRLITPILLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGT 112
Query: 226 YRFCNSPA----VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAA 281
Y P VGASGAIFGL G + +F++ RN L G+E + + ++ F ++ S
Sbjct: 113 Y--VTEPLDYVHVGASGAIFGLFGVY-LFMVLFRNEL-IGQEHSKMIITLLAFAVLMSFI 168
Query: 282 FANI 285
+NI
Sbjct: 169 NSNI 172
>gi|332638068|ref|ZP_08416931.1| membrane-associated serine protease [Weissella cibaria KACC 11862]
Length = 233
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF- 228
Q+WRL T+ FLH +HL N +L IG +E GP R+L ++F + I+ + MS F
Sbjct: 59 QWWRLITAGFLHVTFSHLAFNMITLYFIGRLLEIELGPWRFLALFFLTVISGNLMSLAFG 118
Query: 229 -CNSPAVGASGAIFGLVGS 246
N + GASG IFGL G+
Sbjct: 119 GVNVISAGASGGIFGLFGA 137
>gi|432977333|ref|ZP_20166158.1| hypothetical protein A15S_03237 [Escherichia coli KTE209]
gi|433086282|ref|ZP_20272679.1| hypothetical protein WIY_00721 [Escherichia coli KTE137]
gi|431482437|gb|ELH62140.1| hypothetical protein A15S_03237 [Escherichia coli KTE209]
gi|431609318|gb|ELI78643.1| hypothetical protein WIY_00721 [Escherichia coli KTE137]
Length = 348
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L ++G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|257065576|ref|YP_003151832.1| rhomboid family protein [Anaerococcus prevotii DSM 20548]
gi|256797456|gb|ACV28111.1| Rhomboid family protein [Anaerococcus prevotii DSM 20548]
Length = 225
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 82/157 (52%), Gaps = 16/157 (10%)
Query: 134 TNILLAVNVLVYIAQFATQ-----DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +L+ +N+ V+ T + ++ +GA + L +G++WR T+AF+H H++
Sbjct: 12 TTVLMIINIAVFAIMTLTGGSESIENIVRFGAMVKPLFYQGEWWRALTAAFIHIGFFHIL 71
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGS 246
N Y L +IGP E++ G +L +Y + + + +Y F N+ + GAS +++G+ G
Sbjct: 72 FNMYFLYNIGPLFERLYGSINFLIIYILAGVLGNLFTYAFGGANTVSAGASTSLYGMFGL 131
Query: 247 FAVFIMRHRNILGGGKEELQHLA----KVIIFNMVCS 279
++ +++ E L+ L +I+ N+V S
Sbjct: 132 AIGLMINYKD-----DEILRGLGASFISIIVINIVYS 163
>gi|336430826|ref|ZP_08610764.1| hypothetical protein HMPREF0994_06770 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336016582|gb|EGN46362.1| hypothetical protein HMPREF0994_06770 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 209
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 6/126 (4%)
Query: 136 ILLAVNVLVYIAQFATQDKLLLWGA-KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
+L A NV++++ T D L + G LI +++RL T+ FLHA+I+HL+ N L
Sbjct: 23 VLTAANVIIFLVCQFTGDWLYIKGEFGAFYLIRSQEYYRLVTAMFLHADISHLVNNMILL 82
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-----AVGASGAIFGLVGSFAV 249
G +EK G RYL ++F S I + ++ F S ++GASGA+FGL+G
Sbjct: 83 YFGGEIVEKTIGSVRYLVLFFVSGICGNLLTAIFEVSTGMYFNSIGASGAVFGLIGGLLY 142
Query: 250 FIMRHR 255
++ +
Sbjct: 143 LVITRK 148
>gi|424817145|ref|ZP_18242296.1| hypothetical protein ECD227_2262 [Escherichia fergusonii ECD227]
gi|325498165|gb|EGC96024.1| hypothetical protein ECD227_2262 [Escherichia fergusonii ECD227]
Length = 625
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 66/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|331672189|ref|ZP_08372981.1| outer membrane protein [Escherichia coli TA280]
gi|331070656|gb|EGI42019.1| outer membrane protein [Escherichia coli TA280]
Length = 625
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 65/120 (54%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVTSLTLSGESWRLLSSVFLHSSFPHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L ++ S + +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGAVAERILGKWRLLIIWLFSGVFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|253573307|ref|ZP_04850650.1| rhomboid family protein [Paenibacillus sp. oral taxon 786 str. D14]
gi|251846835|gb|EES74840.1| rhomboid family protein [Paenibacillus sp. oral taxon 786 str. D14]
Length = 204
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 12/162 (7%)
Query: 134 TNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +LLA N++++I LL +GA + GQ WRL T+ FLH HL
Sbjct: 19 TCLLLAANIVMFIMLTLNGGSRNGLTLLRFGAMSDIEPFAGQSWRLFTAMFLHNGFDHLF 78
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS---YRFCNSP--AVGASGAIFGL 243
N +++ P +E++ G RY VY S + + +S Y+F + P +VGASGA++G+
Sbjct: 79 SNSFAILVFAPPLERLLGWWRYALVYLGSGLVGNLISMGVYQFSSVPHISVGASGAVYGV 138
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
G+F + R+++ + + L ++I ++ S I
Sbjct: 139 YGAFLYIALLQRHLM--DESSRKTLYSLLIIGVIYSVLVPKI 178
>gi|411007398|ref|ZP_11383727.1| hypothetical protein SgloC_31738 [Streptomyces globisporus C-1027]
Length = 302
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 83/180 (46%), Gaps = 33/180 (18%)
Query: 134 TNILLAVNVLVYIAQFA---TQDKLLLWGAKIN-------------------SLIDKGQF 171
T +L+A+NVL Y+ + D+ + GA + + I G++
Sbjct: 72 TYVLIALNVLAYLGEVVRPEIVDRFAVLGAALTGPDGEQYYYRGDTFPGYELTGIADGEW 131
Query: 172 WRLATSAFLHA------NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+RL T AFLH + HL+ N ++L +IG +E G RYL +Y SA+ S +
Sbjct: 132 YRLVTGAFLHLPPDASFGVMHLLFNMFALWNIGRAVEGQLGRARYLALYLLSAVGGSVLV 191
Query: 226 YRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFAN 284
Y ++ VGASGA+FGL ++ V HR LG + + MV SA F +
Sbjct: 192 YLLAPDTSTVGASGAVFGLAAAYWVI---HRR-LGHDMAAVNRFMAGFLIWMVLSALFTS 247
>gi|365156793|ref|ZP_09353089.1| hypothetical protein HMPREF1015_01990 [Bacillus smithii 7_3_47FAA]
gi|363626850|gb|EHL77815.1| hypothetical protein HMPREF1015_01990 [Bacillus smithii 7_3_47FAA]
Length = 198
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 69/143 (48%), Gaps = 11/143 (7%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
N I G++WRL +S F+H +H N +L P +E + ++L +Y S I ++
Sbjct: 50 NIAIANGEWWRLISSIFIHRGFSHFFFNTITLVLFAPPLEIMLKKIKFLLLYLLSGIFAN 109
Query: 223 AMSYRF--CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSA 280
A ++ F +G+SGAIFGL GSFA F++ +L ++ IIF +V A
Sbjct: 110 AATFLFMPLTYTHIGSSGAIFGLFGSFAAFLLVKPPLLADHHQK-------IIFPVVLIA 162
Query: 281 AFANIVKIESRHT--LTGETCYF 301
++ E L G C F
Sbjct: 163 LLMTFIQTEVNIVSHLAGFACGF 185
>gi|51860142|gb|AAU11321.1| rhomboid 2 [Toxoplasma gondii]
gi|221481683|gb|EEE20059.1| rhomboid 2 protease [Toxoplasma gondii GT1]
Length = 284
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 61/120 (50%), Gaps = 14/120 (11%)
Query: 140 VNVLVYIAQFA-----------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
V + VYIA A T L+++GA I LI G+ WRL FLH N+ H++
Sbjct: 68 VQIAVYIASLAAGLAPNEILAPTPQTLVMFGANIPELIRVGEIWRLICPLFLHLNLFHIL 127
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSPA-VGASGAIFGLVG 245
+N + IG TME+ G + L VYF + ++ +S FC GAS A+F L+G
Sbjct: 128 MNLWVQIRIGLTMEEKYGWKMLLAVYFGVGVLANMISAAVLFCGQQMKAGASTAVFALIG 187
>gi|209917918|ref|YP_002292002.1| hypothetical protein ECSE_0727 [Escherichia coli SE11]
gi|422355992|ref|ZP_16436695.1| peptidase, S54 family protein [Escherichia coli MS 117-3]
gi|209911177|dbj|BAG76251.1| conserved hypothetical protein [Escherichia coli SE11]
gi|324016063|gb|EGB85282.1| peptidase, S54 family protein [Escherichia coli MS 117-3]
Length = 625
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLFSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L ++ S + +S Y +S +VGASGAI G+ G+
Sbjct: 83 ALLVVGAVAERILGKWRLLIIWLFSGVFGGLISACYALRDSDQIVISVGASGAIMGIAGA 142
>gi|266621088|ref|ZP_06114023.1| rhomboid protease GluP [Clostridium hathewayi DSM 13479]
gi|288867244|gb|EFC99542.1| rhomboid protease GluP [Clostridium hathewayi DSM 13479]
Length = 206
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 22/167 (13%)
Query: 131 RQWTNI-LLAVNVLVYIAQFATQDK-----LLLWGAKINSL-IDKGQFWRLATSAFLHAN 183
+ + NI L+A+NVL ++ AT ++ GA L I++G+++RL TS F+H
Sbjct: 9 KAYVNIGLIALNVLYFLFLEATGSSENTSFMVAHGAMYAPLVIERGEYYRLITSVFMHFG 68
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSY-----RFCNSPAVGASG 238
I+H+M N L +G +E+ G +YL Y + ++ +S + N + GASG
Sbjct: 69 ISHIMNNMLILFILGDNLERALGHIKYLFFYLICGVGANIVSMIVNLGEYRNVVSAGASG 128
Query: 239 AIFGLVGS--FAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFA 283
AIFG++G +AV I R R E+L + ++ +VCS F
Sbjct: 129 AIFGVIGGLLYAVIINRGR------LEDLS--TRQLVVMIVCSLYFG 167
>gi|284028038|ref|YP_003377969.1| Rhomboid family protein [Kribbella flavida DSM 17836]
gi|283807331|gb|ADB29170.1| Rhomboid family protein [Kribbella flavida DSM 17836]
Length = 246
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 73/143 (51%), Gaps = 10/143 (6%)
Query: 145 YIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKI 204
+IA A L+ + L+D + WRL TSAF H I H+ N + L +GP +E++
Sbjct: 80 FIAVRAGNSTLVYDLVLVPVLVDS-EPWRLFTSAFTHLQIFHIFSNLFMLYQVGPLLEQM 138
Query: 205 CGPRRYLGVYFSSAIASSAMSYRFCN--SPAVGASGAIFGLVGSFAVFIMRHRNILGGGK 262
G R++ +YF SA+ S + N S +GASGA+ GLVG+ V I R R G
Sbjct: 139 LGRLRFVLLYFLSALGGSIAVWLLANPVSSTLGASGAVLGLVGALLV-ISRAR-----GM 192
Query: 263 EELQHLAKVIIFNMVCSAAFANI 285
+ LA V I V S F NI
Sbjct: 193 DVTWILAYVAI-TAVISFLFPNI 214
>gi|336319156|ref|YP_004599124.1| Rhomboid family protein [[Cellvibrio] gilvus ATCC 13127]
gi|336102737|gb|AEI10556.1| Rhomboid family protein [[Cellvibrio] gilvus ATCC 13127]
Length = 299
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 78/161 (48%), Gaps = 18/161 (11%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHA--NIAHLMVNC 191
T +A+ V+ Y+ Q+ W K + L + WR TSAFLH+ +I H+++N
Sbjct: 71 TLAFIALCVVAYLGQWTVDGFTTDW--KYSPLRGHAEPWRFLTSAFLHSPGSIFHIVLNM 128
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASS-------AMSYRFCNSPAVGASGAIFGLV 244
+L ++GP +E G RY +Y SAI S A+ + S VGASGA+FGL
Sbjct: 129 VALWTVGPYLEVQLGRVRYATLYLLSAIGGSVVVLLVAALGWSDWYSGVVGASGAVFGLF 188
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
G A F++ R+ Q + VI NMV S I
Sbjct: 189 G--AAFVVMWRS-----GHPAQGMLGVIGVNMVFSFVVPGI 222
>gi|331086792|ref|ZP_08335869.1| hypothetical protein HMPREF0987_02172 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330409958|gb|EGG89393.1| hypothetical protein HMPREF0987_02172 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 209
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 75/137 (54%), Gaps = 11/137 (8%)
Query: 134 TNILLAVNVLVYIA---QFATQDKLLLW--GAK-INSLIDKGQFWRLATSAFLHANIAHL 187
T ++ +N+ +++ Q T+D + ++ GA + S+++ G+++RL TS FLH HL
Sbjct: 10 TIAMIVINITIFLVLSFQGMTEDGIFMFHHGAMYVPSMLEDGEYYRLFTSMFLHFGFEHL 69
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-----NSPAVGASGAIFG 242
M N + L IG +E G +YL VY S + + +S + + GASGAIFG
Sbjct: 70 MNNMFILGVIGWNLELEIGKWKYLTVYLLSGLMGNLLSAWMDIQTGEYAISAGASGAIFG 129
Query: 243 LVGSFAVFIMRHRNILG 259
++G+ +R+R +G
Sbjct: 130 VIGALFYVALRNRGRIG 146
>gi|300817823|ref|ZP_07098037.1| peptidase, S54 family protein [Escherichia coli MS 107-1]
gi|415876304|ref|ZP_11542772.1| outer membrane protein [Escherichia coli MS 79-10]
gi|432804745|ref|ZP_20038690.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE91]
gi|432933001|ref|ZP_20132855.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE184]
gi|433192613|ref|ZP_20376630.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE90]
gi|300529520|gb|EFK50582.1| peptidase, S54 family protein [Escherichia coli MS 107-1]
gi|342928791|gb|EGU97513.1| outer membrane protein [Escherichia coli MS 79-10]
gi|431357208|gb|ELG43881.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE91]
gi|431457034|gb|ELH37377.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE184]
gi|431720867|gb|ELJ84886.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE90]
Length = 625
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLFSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L ++ S + +S Y +S +VGASGAI G+ G+
Sbjct: 83 ALLVVGAVAERILGKWRLLIIWLFSGVFGGLISACYALRDSDQIVISVGASGAIMGIAGA 142
>gi|311105467|ref|YP_003978320.1| rhomboid family protein [Achromobacter xylosoxidans A8]
gi|310760156|gb|ADP15605.1| rhomboid family protein [Achromobacter xylosoxidans A8]
Length = 425
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 13/137 (9%)
Query: 134 TNILLAVNVLVYIA---------QFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHAN 183
T +L+A NV VY A + +Q L+ WG + +L G++WRL TS FLH
Sbjct: 19 TLLLIACNVAVYCAAGFLDTRAFESLSQTSFLIDWGGNVPALTLSGEYWRLFTSMFLHVG 78
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS---AMSYRFCNSPAVGASGAI 240
HL +N +L S+G +E +LGVY S + S A+ +R + GASGAI
Sbjct: 79 FLHLAINMLALWSLGVILEARMRSWVFLGVYLLSGLCGSLVTALWHRDEFFLSCGASGAI 138
Query: 241 FGLVGSFAVFIMRHRNI 257
G+ G+ V+ + R +
Sbjct: 139 LGIFGAAIVYGLHDRRM 155
>gi|422412807|ref|ZP_16489766.1| rhomboid family protein, partial [Listeria innocua FSL S4-378]
gi|313619110|gb|EFR90907.1| rhomboid family protein [Listeria innocua FSL S4-378]
Length = 472
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLIHLASNAVMLYIVGAWAERIYGKWRYILIL 270
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
I + S+ + +VGAS A+F ++G+ ++ N+
Sbjct: 271 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNL 313
>gi|242040475|ref|XP_002467632.1| hypothetical protein SORBIDRAFT_01g031210 [Sorghum bicolor]
gi|241921486|gb|EER94630.1| hypothetical protein SORBIDRAFT_01g031210 [Sorghum bicolor]
Length = 335
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 68/130 (52%), Gaps = 7/130 (5%)
Query: 150 ATQDKL--LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
AT KL L+W + ++ + Q WRL T +LHA +AHL+ N SL IG +E+ G
Sbjct: 104 ATLQKLGALVW----DKVVQEHQGWRLVTCIWLHAGVAHLLANMVSLVLIGLRLEQQFGY 159
Query: 208 RRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQ 266
R +Y S + S +S F N+ +VGASGA+FGL+G+ + + I L
Sbjct: 160 VRIGIIYLVSGVGGSVLSSLFVRNTISVGASGALFGLLGAMLSELFTNWTIYSNKAAALV 219
Query: 267 HLAKVIIFNM 276
L VI N+
Sbjct: 220 TLLIVIAINL 229
>gi|227485794|ref|ZP_03916110.1| S54 family peptidase [Anaerococcus lactolyticus ATCC 51172]
gi|227236172|gb|EEI86187.1| S54 family peptidase [Anaerococcus lactolyticus ATCC 51172]
Length = 227
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 73/131 (55%), Gaps = 9/131 (6%)
Query: 134 TNILLAVNVLVYIAQFATQ-----DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T++L+ +N++V++ + + L+ +GA L+ G++WRL T++F+H H++
Sbjct: 14 TSVLMVINIIVFVLMSLSGGSENIENLIRFGANSKILVAHGEWWRLITASFIHIGFFHIL 73
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP---AVGASGAIFGLVG 245
N Y S+GP E++ G +L +Y S I + +S+ SP + GAS +++G++G
Sbjct: 74 FNMYFFYSLGPIFERLFGSFNFLIIYLISGIFGNLLSFA-LGSPYTVSAGASTSLYGMLG 132
Query: 246 SFAVFIMRHRN 256
+ +RN
Sbjct: 133 LAIGLMATYRN 143
>gi|423100417|ref|ZP_17088124.1| peptidase, S54 family [Listeria innocua ATCC 33091]
gi|370793418|gb|EHN61256.1| peptidase, S54 family [Listeria innocua ATCC 33091]
Length = 518
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 217 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLIHLASNAVMLYIVGAWAERIYGKWRYILIL 276
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
I + S+ + +VGAS A+F ++G+ ++ N+
Sbjct: 277 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNL 319
>gi|170020987|ref|YP_001725941.1| hypothetical protein EcolC_2989 [Escherichia coli ATCC 8739]
gi|169755915|gb|ACA78614.1| 40-residue YVTN family beta-propeller repeat protein [Escherichia
coli ATCC 8739]
Length = 625
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLSLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L ++ S + +S Y +S +VGASGAI G+ G+
Sbjct: 83 ALLVVGAVTERILGKWRLLIIWLFSGVFGGLISACYALRDSDQIVISVGASGAIMGIAGA 142
>gi|300823026|ref|ZP_07103160.1| peptidase, S54 family protein [Escherichia coli MS 119-7]
gi|417224822|ref|ZP_12028113.1| peptidase, S54 family [Escherichia coli 96.154]
gi|417268148|ref|ZP_12055509.1| peptidase, S54 family [Escherichia coli 3.3884]
gi|423708594|ref|ZP_17682972.1| 40-residue YVTN family beta-propeller [Escherichia coli B799]
gi|432375777|ref|ZP_19618789.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE12]
gi|432833688|ref|ZP_20067234.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE136]
gi|300524375|gb|EFK45444.1| peptidase, S54 family protein [Escherichia coli MS 119-7]
gi|385707931|gb|EIG44956.1| 40-residue YVTN family beta-propeller [Escherichia coli B799]
gi|386199870|gb|EIH98861.1| peptidase, S54 family [Escherichia coli 96.154]
gi|386230506|gb|EII57861.1| peptidase, S54 family [Escherichia coli 3.3884]
gi|430901150|gb|ELC23133.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE12]
gi|431388187|gb|ELG71925.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE136]
Length = 625
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLFSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L ++ S + +S Y +S +VGASGAI G+ G+
Sbjct: 83 ALLVVGAVAERILGKWRLLIIWLFSGVFGGLISACYALRDSDQIVISVGASGAIMGIAGA 142
>gi|432484363|ref|ZP_19726286.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE212]
gi|432669571|ref|ZP_19905116.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE119]
gi|433172497|ref|ZP_20357054.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE232]
gi|431018164|gb|ELD31601.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE212]
gi|431213304|gb|ELF11180.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE119]
gi|431695998|gb|ELJ61196.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE232]
Length = 625
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLSLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L ++ S + +S Y +S +VGASGAI G+ G+
Sbjct: 83 ALLVVGAVTERILGKWRLLIIWLFSGVFGGLISACYALRDSDQIVISVGASGAIMGIAGA 142
>gi|397671735|ref|YP_006513270.1| peptidase, S54 family [Propionibacterium propionicum F0230a]
gi|395143082|gb|AFN47189.1| peptidase, S54 family [Propionibacterium propionicum F0230a]
Length = 272
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
GA + G +W++ T+AF H ++ H+ N +L +GP +E + G R+L +Y SA
Sbjct: 95 GATWTEGVASGAWWQVLTNAFTHLDVIHIAFNMVALYVLGPQLESVLGRARFLALYLVSA 154
Query: 219 IASSAMSYRFCN--SPAVGASGAIFGLVGSFAVFIMRH----RNIL 258
+ SA F + +GASGAIFG++G+ + +H R IL
Sbjct: 155 LTGSAAVVWFSAPYTTTMGASGAIFGMMGAVLLIAWKHHGDVRTIL 200
>gi|16800442|ref|NP_470710.1| hypothetical protein lin1374 [Listeria innocua Clip11262]
gi|422415832|ref|ZP_16492789.1| rhomboid family protein [Listeria innocua FSL J1-023]
gi|16413847|emb|CAC96605.1| lin1374 [Listeria innocua Clip11262]
gi|313623901|gb|EFR94013.1| rhomboid family protein [Listeria innocua FSL J1-023]
Length = 512
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLIHLASNAVMLYIVGAWAERIYGKWRYILIL 270
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
I + S+ + +VGAS A+F ++G+ ++ N+
Sbjct: 271 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNL 313
>gi|188495226|ref|ZP_03002496.1| peptidase, S54 (rhomboid) family [Escherichia coli 53638]
gi|188490425|gb|EDU65528.1| peptidase, S54 (rhomboid) family [Escherichia coli 53638]
Length = 625
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLSLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L ++ S + +S Y +S +VGASGAI G+ G+
Sbjct: 83 ALLVVGAVTERILGKWRLLIIWLFSGVFGGLISACYALRDSDQIVISVGASGAIMGIAGA 142
>gi|432368609|ref|ZP_19611714.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE10]
gi|430889075|gb|ELC11746.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE10]
Length = 625
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLSLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L ++ S + +S Y +S +VGASGAI G+ G+
Sbjct: 83 ALLVVGAVTERILGKWRLLIIWLFSGVFGGLISACYALRDSDQIVISVGASGAIMGIAGA 142
>gi|116872768|ref|YP_849549.1| rhomboid family membrane protein [Listeria welshimeri serovar 6b
str. SLCC5334]
gi|116741646|emb|CAK20770.1| rhomboid family membrane protein [Listeria welshimeri serovar 6b
str. SLCC5334]
Length = 512
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYILIL 270
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
I + S+ + +VGAS A+F ++G+ ++ N+
Sbjct: 271 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNL 313
>gi|229083526|ref|ZP_04215864.1| Rhomboid [Bacillus cereus Rock3-44]
gi|228699780|gb|EEL52427.1| Rhomboid [Bacillus cereus Rock3-44]
Length = 186
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Query: 160 AKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
A N I KG++WRL TS F+H + H + N L +G ++EK G R++ ++F++ I
Sbjct: 36 AAYNEYISKGEYWRLITSLFIHVDFQHFLSNSICLFFLGQSIEKQLGSIRFILLFFTAGI 95
Query: 220 ASSAMSYRFCNSPAV--GASGAIFGLVGSFAVFIMRHR 255
+ + SY + GASG IFGL+G+ +F++ R
Sbjct: 96 SGNIASYIIMPIEYIHAGASGGIFGLLGA-QLFLLYSR 132
>gi|400288453|ref|ZP_10790485.1| serine endopeptidase [Psychrobacter sp. PAMC 21119]
Length = 573
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 6/101 (5%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ GQ+W++ TS F+HA I HL+++ L S+G +EK+ GP R++ +F I S+ +
Sbjct: 415 LQAGQYWQVVTSLFVHAGIIHLVMSLAMLFSVGYILEKVLGPARFMIAFFICGIFSNILG 474
Query: 226 YRFCNSPAVGASGAIFGLVG------SFAVFIMRHRNILGG 260
+ + GA GAI G+ G + ++ ++R I G
Sbjct: 475 VLYYDMDMAGAWGAILGMFGIAITLVIYKIYNKKYREIYGA 515
>gi|422827860|ref|ZP_16876033.1| hypothetical protein ESNG_00538 [Escherichia coli B093]
gi|371616286|gb|EHO04652.1| hypothetical protein ESNG_00538 [Escherichia coli B093]
Length = 625
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L ++ S + +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGAVAERILGKWRLLIIWLFSGVFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|251784156|ref|YP_002998460.1| ybl24 [Escherichia coli BL21(DE3)]
gi|253774360|ref|YP_003037191.1| 40-residue YVTN family beta-propeller repeat protein [Escherichia
coli 'BL21-Gold(DE3)pLysS AG']
gi|254160735|ref|YP_003043843.1| hypothetical protein ECB_00624 [Escherichia coli B str. REL606]
gi|254287523|ref|YP_003053271.1| hypothetical protein ECD_00624 [Escherichia coli BL21(DE3)]
gi|297516367|ref|ZP_06934753.1| hypothetical protein EcolOP_01939 [Escherichia coli OP50]
gi|422785262|ref|ZP_16838001.1| rhomboid family protein [Escherichia coli H489]
gi|242376429|emb|CAQ31131.1| ybl24 [Escherichia coli BL21(DE3)]
gi|253325404|gb|ACT30006.1| 40-residue YVTN family beta-propeller repeat protein [Escherichia
coli 'BL21-Gold(DE3)pLysS AG']
gi|253972636|gb|ACT38307.1| conserved hypothetical protein [Escherichia coli B str. REL606]
gi|253976830|gb|ACT42500.1| conserved hypothetical protein [Escherichia coli BL21(DE3)]
gi|323963224|gb|EGB58792.1| rhomboid family protein [Escherichia coli H489]
Length = 625
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLSLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L ++ S + +S Y +S +VGASGAI G+ G+
Sbjct: 83 ALLVVGAVTERILGKWRLLIIWLFSGVFGGLISACYALRDSDQIVISVGASGAIMGIAGA 142
>gi|386757063|ref|YP_006230279.1| rhomboid family protein [Bacillus sp. JS]
gi|384930345|gb|AFI27023.1| Rhomboid family protein [Bacillus sp. JS]
Length = 199
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 69/130 (53%), Gaps = 8/130 (6%)
Query: 160 AKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
A N + G++WRL T LHA HL+ N S+ P +E++ G R+L VY S I
Sbjct: 47 AGYNLGVANGEWWRLITPILLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGI 106
Query: 220 ASSAMSYRFCNSPA----VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFN 275
+ +Y P VGASGAIFGL G + +F++ RN L G+E + + ++ F
Sbjct: 107 IGNIGTY--VTEPLDYVHVGASGAIFGLFGVY-LFMVLFRNEL-IGQEHSKMILILLAFA 162
Query: 276 MVCSAAFANI 285
++ S +NI
Sbjct: 163 VLMSFINSNI 172
>gi|309803097|ref|ZP_07697194.1| peptidase, S54 family [Lactobacillus iners LactinV 11V1-d]
gi|309806110|ref|ZP_07700129.1| peptidase, S54 family [Lactobacillus iners LactinV 03V1-b]
gi|329920170|ref|ZP_08277001.1| peptidase, S54 family [Lactobacillus iners SPIN 1401G]
gi|349611504|ref|ZP_08890739.1| hypothetical protein HMPREF1027_00166 [Lactobacillus sp. 7_1_47FAA]
gi|308164605|gb|EFO66855.1| peptidase, S54 family [Lactobacillus iners LactinV 11V1-d]
gi|308167465|gb|EFO69625.1| peptidase, S54 family [Lactobacillus iners LactinV 03V1-b]
gi|328936624|gb|EGG33068.1| peptidase, S54 family [Lactobacillus iners SPIN 1401G]
gi|348608597|gb|EGY58577.1| hypothetical protein HMPREF1027_00166 [Lactobacillus sp. 7_1_47FAA]
Length = 232
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 76/137 (55%), Gaps = 9/137 (6%)
Query: 131 RQWTNILLAVNVLVYIAQFATQ-----DKLLLWGAKIN-SLIDKGQFWRLATSAFLHANI 184
R +T ++A+ ++VY + +KLL +G N +++ K QFWRL T+ F+HA
Sbjct: 16 RIFTWSIIAILIIVYAIELFFDVNNDINKLLDFGCMNNIAVVTKLQFWRLFTAQFIHAGF 75
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFG 242
H++ N + G +E+ G RYL +Y S + + +S+ N + GAS A+FG
Sbjct: 76 FHIICNIVMIYFFGMFLEQFLGHIRYLTIYLLSGVGGNLLSFALGQDNVISCGASTAVFG 135
Query: 243 LVGS-FAVFIMRHRNIL 258
L+GS A++ + + NI+
Sbjct: 136 LMGSVLALYFLNNDNII 152
>gi|387606156|ref|YP_006095012.1| hypothetical protein EC042_0691 [Escherichia coli 042]
gi|284920456|emb|CBG33517.1| putative membrane protein [Escherichia coli 042]
Length = 625
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEDVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFPHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L V+ S + +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGAVAERILGKWRLLIVWLFSGVFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|86743118|ref|YP_483518.1| rhomboid-like protein [Frankia sp. CcI3]
gi|86569980|gb|ABD13789.1| Rhomboid-like protein [Frankia sp. CcI3]
Length = 275
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 82/167 (49%), Gaps = 23/167 (13%)
Query: 134 TNILLAVNVLVYIAQFAT-----------QDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
T IL+ + V YI Q A + G +I + Q++RL T+AFLHA
Sbjct: 68 TQILIGLCVAAYILQGAPGLTGRGTFNRFTGDFAMIGIRIAA---DDQYYRLLTAAFLHA 124
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN--SPAVGASGAI 240
+ H++ N Y+L +G +E I G RYL ++ + A+ + +SY + + +VGAS AI
Sbjct: 125 GVLHILFNMYALYLLGFQLEAILGRARYLALFVAGALGGNTLSYVLGDGFTVSVGASTAI 184
Query: 241 FGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANIVK 287
F ++ + R R + + + V+ N+ + +F+NI K
Sbjct: 185 FAFFAAYYIIARRLR-------VDSRQILIVLGINLAITFSFSNIDK 224
>gi|254824604|ref|ZP_05229605.1| rhomboid family protein [Listeria monocytogenes FSL J1-194]
gi|255520229|ref|ZP_05387466.1| rhomboid family protein [Listeria monocytogenes FSL J1-175]
gi|293593842|gb|EFG01603.1| rhomboid family protein [Listeria monocytogenes FSL J1-194]
Length = 518
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 217 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 276
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
I + S+ + +VGAS A+F ++G+ ++ N+
Sbjct: 277 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNL 319
>gi|226223938|ref|YP_002758045.1| hypothetical protein Lm4b_01345 [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|386732075|ref|YP_006205571.1| rhomboid family protein [Listeria monocytogenes 07PF0776]
gi|405752554|ref|YP_006676019.1| rhomboid family protein [Listeria monocytogenes SLCC2378]
gi|406704108|ref|YP_006754462.1| rhomboid family protein [Listeria monocytogenes L312]
gi|225876400|emb|CAS05109.1| Hypothetical protein of unknown function [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|384390833|gb|AFH79903.1| rhomboid family protein [Listeria monocytogenes 07PF0776]
gi|404221754|emb|CBY73117.1| rhomboid family protein [Listeria monocytogenes SLCC2378]
gi|406361138|emb|CBY67411.1| rhomboid family protein [Listeria monocytogenes L312]
Length = 512
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 270
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
I + S+ + +VGAS A+F ++G+ ++ N+
Sbjct: 271 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNL 313
>gi|46907563|ref|YP_013952.1| rhomboid family protein [Listeria monocytogenes serotype 4b str.
F2365]
gi|424714211|ref|YP_007014926.1| Rhomboid family protein [Listeria monocytogenes serotype 4b str.
LL195]
gi|46880831|gb|AAT04129.1| rhomboid family protein [Listeria monocytogenes serotype 4b str.
F2365]
gi|424013395|emb|CCO63935.1| Rhomboid family protein [Listeria monocytogenes serotype 4b str.
LL195]
Length = 518
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 217 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 276
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
I + S+ + +VGAS A+F ++G+ ++ N+
Sbjct: 277 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNL 319
>gi|404280891|ref|YP_006681789.1| rhomboid family protein [Listeria monocytogenes SLCC2755]
gi|404286756|ref|YP_006693342.1| rhomboid family protein [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|405749679|ref|YP_006673145.1| rhomboid family protein [Listeria monocytogenes ATCC 19117]
gi|405755466|ref|YP_006678930.1| rhomboid family protein [Listeria monocytogenes SLCC2540]
gi|417317486|ref|ZP_12104103.1| rhomboid family protein [Listeria monocytogenes J1-220]
gi|328475056|gb|EGF45844.1| rhomboid family protein [Listeria monocytogenes J1-220]
gi|404218879|emb|CBY70243.1| rhomboid family protein [Listeria monocytogenes ATCC 19117]
gi|404224666|emb|CBY76028.1| rhomboid family protein [Listeria monocytogenes SLCC2540]
gi|404227526|emb|CBY48931.1| rhomboid family protein [Listeria monocytogenes SLCC2755]
gi|404245685|emb|CBY03910.1| rhomboid family protein [Listeria monocytogenes serotype 7 str.
SLCC2482]
Length = 512
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 270
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
I + S+ + +VGAS A+F ++G+ ++ N+
Sbjct: 271 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNL 313
>gi|256810190|ref|YP_003127559.1| rhomboid family protein [Methanocaldococcus fervens AG86]
gi|256793390|gb|ACV24059.1| Rhomboid family protein [Methanocaldococcus fervens AG86]
Length = 190
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 5/111 (4%)
Query: 172 WRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS--SAMSYRFC 229
W++ S F+H +I HL+VN + L G +E+I G + YL ++ +S I + + Y +
Sbjct: 39 WQIVMSIFMHGSITHLLVNMFVLFIFGTYLERIVGSKNYLLIFLTSGIVGNLAYILYAYL 98
Query: 230 N---SPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMV 277
+P+VGASGAIFG++G+ A+ R ++ + VIIF ++
Sbjct: 99 TGDYAPSVGASGAIFGVMGALAILAPHLRVVVFPLPVPISIKLAVIIFALI 149
>gi|47093617|ref|ZP_00231374.1| rhomboid family protein [Listeria monocytogenes str. 4b H7858]
gi|254932348|ref|ZP_05265707.1| rhomboid family protein [Listeria monocytogenes HPB2262]
gi|258611754|ref|ZP_05241962.2| rhomboid family protein [Listeria monocytogenes FSL R2-503]
gi|300765423|ref|ZP_07075405.1| rhomboid family protein [Listeria monocytogenes FSL N1-017]
gi|424823099|ref|ZP_18248112.1| Rhomboid family protein [Listeria monocytogenes str. Scott A]
gi|47017993|gb|EAL08769.1| rhomboid family protein [Listeria monocytogenes str. 4b H7858]
gi|258605928|gb|EEW18536.1| rhomboid family protein [Listeria monocytogenes FSL R2-503]
gi|293583904|gb|EFF95936.1| rhomboid family protein [Listeria monocytogenes HPB2262]
gi|300513860|gb|EFK40925.1| rhomboid family protein [Listeria monocytogenes FSL N1-017]
gi|332311779|gb|EGJ24874.1| Rhomboid family protein [Listeria monocytogenes str. Scott A]
Length = 518
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 217 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 276
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
I + S+ + +VGAS A+F ++G+ ++ N+
Sbjct: 277 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNL 319
>gi|404407774|ref|YP_006690489.1| rhomboid family protein [Listeria monocytogenes SLCC2376]
gi|404241923|emb|CBY63323.1| rhomboid family protein [Listeria monocytogenes SLCC2376]
Length = 512
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 270
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
I + S+ + +VGAS A+F ++G+ ++ N+
Sbjct: 271 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNL 313
>gi|422809417|ref|ZP_16857828.1| rhomboid family protein [Listeria monocytogenes FSL J1-208]
gi|378753031|gb|EHY63616.1| rhomboid family protein [Listeria monocytogenes FSL J1-208]
Length = 518
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 217 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 276
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
I + S+ + +VGAS A+F ++G+ ++ N+
Sbjct: 277 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNL 319
>gi|290893553|ref|ZP_06556536.1| rhomboid family protein [Listeria monocytogenes FSL J2-071]
gi|290556898|gb|EFD90429.1| rhomboid family protein [Listeria monocytogenes FSL J2-071]
Length = 518
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 217 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 276
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
I + S+ + +VGAS A+F ++G+ ++ N+
Sbjct: 277 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNL 319
>gi|225375145|ref|ZP_03752366.1| hypothetical protein ROSEINA2194_00769 [Roseburia inulinivorans DSM
16841]
gi|225213019|gb|EEG95373.1| hypothetical protein ROSEINA2194_00769 [Roseburia inulinivorans DSM
16841]
Length = 357
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 69/138 (50%), Gaps = 11/138 (7%)
Query: 134 TNILLAVNVLVYIA---QFATQDKLLLW--GAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T ++ N+LVYI AT+D + GA + Q+WRL T+ FLH +AHL
Sbjct: 170 TGLIALANILVYIILSFGGATEDAFYMASRGAMYPEFLTINHQWWRLLTAMFLHFGVAHL 229
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSY---RFCNSPAV--GASGAIFG 242
M N +G +EK G + VYF++ I +SY + AV GASGA+FG
Sbjct: 230 MNNMVIFCCVGSRLEKYIGHWKMAVVYFAAGIGGGLLSYIMMLLSGNYAVSGGASGAVFG 289
Query: 243 LVGSFAVFIMRHRNILGG 260
++G ++ HR L G
Sbjct: 290 VIGGLLWVVIYHRGKLEG 307
>gi|18977600|ref|NP_578957.1| hypothetical protein PF1228 [Pyrococcus furiosus DSM 3638]
gi|397651726|ref|YP_006492307.1| hypothetical protein PFC_05360 [Pyrococcus furiosus COM1]
gi|18893319|gb|AAL81352.1| hypothetical protein PF1228 [Pyrococcus furiosus DSM 3638]
gi|393189317|gb|AFN04015.1| hypothetical protein PFC_05360 [Pyrococcus furiosus COM1]
Length = 193
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 4/97 (4%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
DK ++ A+IN + G+FWR+ T+ F+H H +N + L +G +E + G R+++
Sbjct: 31 DKAIMQFAQINLYVYLGEFWRVITAIFIHMGYIHFALNLFWLIYLGMDLEGLLGSRKFII 90
Query: 213 VYFSSAIASSAMSYRFCNSPAV---GASGAIFGLVGS 246
V+FS A+ + +S F P V GASG +F +VG+
Sbjct: 91 VFFSGAVIGNILS-LFVLPPFVASGGASGGLFAIVGA 126
>gi|377809821|ref|YP_005005042.1| rhomboid family protein [Pediococcus claussenii ATCC BAA-344]
gi|361056562|gb|AEV95366.1| rhomboid family protein [Pediococcus claussenii ATCC BAA-344]
Length = 229
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 72/132 (54%), Gaps = 8/132 (6%)
Query: 134 TNILLAVNVLVYIAQFATQ-----DKLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
TNIL+ VNV+V++ T + L+ +GA + I G ++ + S F+H I HL
Sbjct: 18 TNILVIVNVIVFLLMSVTGGTTNINNLIRYGAMVPESIKNGSDYFSIFASMFIHIGIEHL 77
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVG 245
++N +L +G +E I G ++L Y + + + +S F N + GASGAIFG++G
Sbjct: 78 VLNMVTLYFLGRILEAIMGHWKFLATYLLAGVFGNLVSLYFANPQTISAGASGAIFGIIG 137
Query: 246 SFAVFIMRHRNI 257
+ + + R++
Sbjct: 138 VWLMLAITFRSV 149
>gi|422409553|ref|ZP_16486514.1| rhomboid family protein [Listeria monocytogenes FSL F2-208]
gi|313608952|gb|EFR84701.1| rhomboid family protein [Listeria monocytogenes FSL F2-208]
Length = 518
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 217 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 276
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
I + S+ + +VGAS A+F ++G+ ++ N+
Sbjct: 277 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNL 319
>gi|281414912|ref|ZP_06246654.1| uncharacterized membrane protein [Micrococcus luteus NCTC 2665]
gi|289706946|ref|ZP_06503281.1| peptidase, S54 (rhomboid) family protein [Micrococcus luteus SK58]
gi|289556271|gb|EFD49627.1| peptidase, S54 (rhomboid) family protein [Micrococcus luteus SK58]
Length = 258
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 83/155 (53%), Gaps = 16/155 (10%)
Query: 134 TNILLAVNVLVYIAQFATQDKL-----LLWGAKINSLIDKGQFWRLATSAFLH--ANIAH 186
T ILLAV +VY AQ+ T+D+ LW A + + + WR+A+ A +H + H
Sbjct: 38 TWILLAVTAVVYAAQWMTRDQASGVTEALWYAGLYTSPYGMEPWRMASYALVHDVSGPTH 97
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN--SPAVGASGAIFGLV 244
L++N +L IG +E G R+L +Y SA+ + + + P VGASGA++G+
Sbjct: 98 LLLNMLALWVIGRVLEPALGWWRFLALYVLSAVGGAVFALWVSDPLQPVVGASGAVYGM- 156
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCS 279
FA + R + GG +++ +A +I N+V S
Sbjct: 157 --FAALFLLTR-VRGG---QVRSIAVLIGLNLVFS 185
>gi|317500904|ref|ZP_07959115.1| rhomboid protease GluP [Lachnospiraceae bacterium 8_1_57FAA]
gi|331089196|ref|ZP_08338098.1| hypothetical protein HMPREF1025_01681 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336439355|ref|ZP_08618969.1| hypothetical protein HMPREF0990_01363 [Lachnospiraceae bacterium
1_1_57FAA]
gi|316897702|gb|EFV19762.1| rhomboid protease GluP [Lachnospiraceae bacterium 8_1_57FAA]
gi|330405748|gb|EGG85277.1| hypothetical protein HMPREF1025_01681 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336016163|gb|EGN45955.1| hypothetical protein HMPREF0990_01363 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 200
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 87/181 (48%), Gaps = 18/181 (9%)
Query: 134 TNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKGQ-FWRLATSAFLHANIAHL 187
T +L+ +NV V++ D +L GA I +GQ ++R+ T FLH I HL
Sbjct: 10 TTVLIVINVAVFLILSMLGDTEDAAFMLQHGAMYEPFITEGQEYYRIFTCMFLHFGITHL 69
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-----AVGASGAIFG 242
M N L ++G +E G R++ +YF S I + +S S + GASGA+FG
Sbjct: 70 MNNMVMLGALGWNLELEIGKLRFIIIYFLSGIGGNILSLIAAISAGESAVSAGASGAVFG 129
Query: 243 LVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFA-NIVKIESRHTLTGETCYF 301
L+G+ ++ +R LG Q + +IF +V S F +++ + G C F
Sbjct: 130 LMGALLYVVIANRGRLG------QLSGRGMIFMVVLSLYFGLTSSGVDNMAHIGGLICGF 183
Query: 302 I 302
I
Sbjct: 184 I 184
>gi|386008108|ref|YP_005926386.1| rhomboid family protein [Listeria monocytogenes L99]
gi|307570918|emb|CAR84097.1| rhomboid family protein [Listeria monocytogenes L99]
Length = 512
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 270
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
I + S+ + +VGAS A+F ++G+ ++ N+
Sbjct: 271 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNL 313
>gi|217964517|ref|YP_002350195.1| rhomboid family protein [Listeria monocytogenes HCC23]
gi|386026709|ref|YP_005947485.1| hypothetical protein LMM7_1422 [Listeria monocytogenes M7]
gi|217333787|gb|ACK39581.1| rhomboid family protein [Listeria monocytogenes HCC23]
gi|336023290|gb|AEH92427.1| hypothetical protein LMM7_1422 [Listeria monocytogenes M7]
Length = 518
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 217 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 276
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
I + S+ + +VGAS A+F ++G+ ++ N+
Sbjct: 277 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNL 319
>gi|352081010|ref|ZP_08951888.1| Rhomboid family protein [Rhodanobacter sp. 2APBS1]
gi|389798976|ref|ZP_10201983.1| hypothetical protein UUC_14538 [Rhodanobacter sp. 116-2]
gi|351683051|gb|EHA66135.1| Rhomboid family protein [Rhodanobacter sp. 2APBS1]
gi|388444005|gb|EIM00132.1| hypothetical protein UUC_14538 [Rhodanobacter sp. 116-2]
Length = 205
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 66/129 (51%), Gaps = 7/129 (5%)
Query: 137 LLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNS 196
LL NV V+ QF LLL A + W++ TSAF+H + H+M N +L
Sbjct: 12 LLIANVAVFFLQFVAGQFLLLHFALWPLGSGLFEVWQIVTSAFMHGGVTHIMFNMLALYM 71
Query: 197 IGPTMEKICGPRRYLGVYFSSAIASS----AMSYRFCNS---PAVGASGAIFGLVGSFAV 249
G T+E+ G R + YF AI +S A+ + F + P +GASGAIFGL+ +F +
Sbjct: 72 FGGTIERTFGAREFTVYYFVCAIVASLLQLAVLWFFPPAQYGPTLGASGAIFGLLLAFGM 131
Query: 250 FIMRHRNIL 258
+ +L
Sbjct: 132 LYPHEKVML 140
>gi|83748711|ref|ZP_00945727.1| Integral membrane protein (Rhomboid family) [Ralstonia solanacearum
UW551]
gi|83724601|gb|EAP71763.1| Integral membrane protein (Rhomboid family) [Ralstonia solanacearum
UW551]
Length = 224
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 73/143 (51%), Gaps = 14/143 (9%)
Query: 129 IGRQWTNILLAVNVLVYIAQFATQDKLL----LWGAKINSLIDKGQF--WRLATSAFLHA 182
+G + L+ NV+V++A+ D LL LW + + G F W+L T AFLHA
Sbjct: 24 VGAAMISSLILANVIVFVAELFAGDTLLRSFALWPPGVAGIDAGGGFSPWQLLTYAFLHA 83
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSY-------RFCNSPAVG 235
++ HL+ N + + G +E+ G R GV + +++ S+A + P VG
Sbjct: 84 SVPHLVFNMFGMFMFGRDVERTLG-RVRTGVLYVASVLSAAFTQIAVMGLSTVPAGPIVG 142
Query: 236 ASGAIFGLVGSFAVFIMRHRNIL 258
ASG +FGL+ ++AV R +L
Sbjct: 143 ASGGVFGLLLAYAVLFPRRMILL 165
>gi|386336259|ref|YP_006032429.1| Integral membrane protein (Rhomboid family) [Ralstonia solanacearum
Po82]
gi|334198709|gb|AEG71893.1| Integral membrane protein (Rhomboid family) [Ralstonia solanacearum
Po82]
Length = 197
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 14/135 (10%)
Query: 137 LLAVNVLVYIAQFATQDKLL----LWGAKINSLIDKGQF--WRLATSAFLHANIAHLMVN 190
L+ NV+V++A+ D LL LW + + G F W+L T AFLHA++ HL+ N
Sbjct: 5 LILANVIVFVAELFAGDTLLRSFALWPPGVAGIDAGGGFFPWQLLTYAFLHASVPHLVFN 64
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSY-------RFCNSPAVGASGAIFGL 243
+ + G +E+ G R GV + +++ S+A + P VGASG +FGL
Sbjct: 65 MFGMFMFGRDVERTLG-RVRTGVLYVASVLSAAFTQIAVMGLSTIPAGPIVGASGGVFGL 123
Query: 244 VGSFAVFIMRHRNIL 258
+ ++AV R +L
Sbjct: 124 LLAYAVLFPRRMILL 138
>gi|432552623|ref|ZP_19789354.1| hypothetical protein A1S3_01005 [Escherichia coli KTE47]
gi|431086908|gb|ELD92924.1| hypothetical protein A1S3_01005 [Escherichia coli KTE47]
Length = 265
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSIFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L ++G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|120406695|ref|YP_956524.1| rhomboid family protein [Mycobacterium vanbaalenii PYR-1]
gi|119959513|gb|ABM16518.1| Rhomboid family protein [Mycobacterium vanbaalenii PYR-1]
Length = 290
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 67/126 (53%), Gaps = 10/126 (7%)
Query: 134 TNILLAVNVLVYIAQFATQD---KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+ +N+L++ Q A+ D L LW G+ +RL TSAFLH ++ H+ N
Sbjct: 81 TYALIGLNLLMFALQMASPDLDRALGLWPPAAA----DGELYRLLTSAFLHFSVTHIAFN 136
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAV 249
+L +G +E G R++ +Y SA+ S + Y N+ GASGA+FGL G A
Sbjct: 137 MLALYFVGAPLEFALGRLRFVALYLFSALGGSVLVYLLTFNALTAGASGAVFGLFG--AT 194
Query: 250 FIMRHR 255
F++ R
Sbjct: 195 FVVGKR 200
>gi|392553138|ref|ZP_10300275.1| rhomboid-like protein [Pseudoalteromonas spongiae UST010723-006]
Length = 360
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 69/138 (50%), Gaps = 15/138 (10%)
Query: 131 RQWTNI-LLAVNVLVYIAQFA-------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
+ W N L+A+N+L++ A F + L A +N + + W L T FLH
Sbjct: 150 KPWVNWSLIAINILIFCAYFFNIESFGFVLENFALRPADVN---NGQEIWTLLTCVFLHG 206
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC---NSPAVGASGA 239
++ HL+ N Y L IG +E G ++YL Y I +S S N P+VGASGA
Sbjct: 207 SVMHLVGNMYFLYIIGDNLEDALGHKKYLMYYLICGIGASLFSLVMSQDPNIPSVGASGA 266
Query: 240 IFGLVGSFAVFIMRHRNI 257
I GL G + ++ RH ++
Sbjct: 267 IAGLFGMYLMW-FRHASL 283
>gi|432749102|ref|ZP_19983720.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE29]
gi|431300119|gb|ELF89682.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE29]
Length = 625
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L + + Y+AQ+ + Q L+ GA + L G+ WRL +S FLH++++HL++N +
Sbjct: 23 LCIGIFCYLAQWMSYEEVDQSALIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G +E+I G R L V+ S + +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGGVVERILGKWRLLIVWLFSGVFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|260439384|ref|ZP_05793200.1| rhomboid family protein [Butyrivibrio crossotus DSM 2876]
gi|292808180|gb|EFF67385.1| rhomboid family protein [Butyrivibrio crossotus DSM 2876]
Length = 337
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 16/149 (10%)
Query: 137 LLAVNVLVYIAQFA---TQDKLLL---WGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
L+A N++VYI + T + L G +ID +++RL TS FLHA + HL N
Sbjct: 153 LIAANIIVYIIVASGGNTYNGFYLATKGGLVAKYVIDYKEYYRLFTSMFLHAGVQHLASN 212
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA---MSYRFCNSPA--VGASGAIFGLVG 245
L +G T+E+I G RY +Y + + +S + YR + A +GASGAIF ++G
Sbjct: 213 MIMLLFVGDTIERIVGHVRYAIIYLAGGLFASVGTLLYYRTYDMYACCIGASGAIFAVMG 272
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIF 274
+ ++ +R G+ E + ++I+F
Sbjct: 273 ALIYILICNR-----GRTEGFSIVRIILF 296
>gi|145596990|ref|YP_001161287.1| rhomboid family protein [Salinispora tropica CNB-440]
gi|145306327|gb|ABP56909.1| Rhomboid family protein [Salinispora tropica CNB-440]
Length = 303
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 63/114 (55%), Gaps = 9/114 (7%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
I GQ++RL T+ FLH + HL++N Y+L +G T+E GP R+L +Y + + + +
Sbjct: 134 IADGQWYRLVTAMFLHYGVIHLLLNMYALWILGRTLEASLGPARFLALYLVAGLGGNVAA 193
Query: 226 YRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMV 277
Y N+ GAS AIFGL A+F++ R ++ + +++ N+V
Sbjct: 194 YLISAPNAATAGASTAIFGLFA--ALFVVGRRM-----GRDVSQVLPILVINLV 240
>gi|392954466|ref|ZP_10320017.1| hypothetical protein WQQ_40890 [Hydrocarboniphaga effusa AP103]
gi|391857123|gb|EIT67654.1| hypothetical protein WQQ_40890 [Hydrocarboniphaga effusa AP103]
Length = 189
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 6/130 (4%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
T +LL +N++V+ Q LL G + L W++ T AFLH ++ HL N +
Sbjct: 5 TYLLLGINIVVFGLQLQDPQSLLP-GYALWPLGSGFAPWQIITCAFLHGSVGHLAANMFG 63
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS-----PAVGASGAIFGLVGSFA 248
L G +E+ G R++ +Y +S + +S ++ P VGASG +FG++G+FA
Sbjct: 64 LWMFGRDVEREIGSARFVNLYMASVVTASLAQLAVTSAAAEAQPTVGASGGLFGVLGAFA 123
Query: 249 VFIMRHRNIL 258
+ R +L
Sbjct: 124 LLFPSRRVML 133
>gi|300697598|ref|YP_003748259.1| putative peptidase S54, rhomboid family [Ralstonia solanacearum
CFBP2957]
gi|299074322|emb|CBJ53869.1| putative peptidase S54, rhomboid family [Ralstonia solanacearum
CFBP2957]
Length = 197
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 14/135 (10%)
Query: 137 LLAVNVLVYIAQFATQDKLL----LWGAKINSLIDKGQF--WRLATSAFLHANIAHLMVN 190
L+ NV+V++A+ D LL LW + + G F W+L T AFLHA++ HL+ N
Sbjct: 5 LILANVIVFVAELFAGDTLLRSFALWPPGVAGIDAGGAFSPWQLLTYAFLHASVPHLVFN 64
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSY-------RFCNSPAVGASGAIFGL 243
+ + G +E+ G R GV + +++ S+A + P VGASG +FGL
Sbjct: 65 MFGMFMFGRDVERTLGGVRT-GVLYVASVLSAAFTQIAVMGLSTVPAGPIVGASGGVFGL 123
Query: 244 VGSFAVFIMRHRNIL 258
+ ++AV R +L
Sbjct: 124 LLAYAVLFPRRMILL 138
>gi|443287776|ref|ZP_21026871.1| Rhomboid family protein [Micromonospora lupini str. Lupac 08]
gi|385882192|emb|CCH21804.1| Rhomboid family protein [Micromonospora lupini str. Lupac 08]
Length = 303
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 64/114 (56%), Gaps = 9/114 (7%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
I +GQ++RL T+ FLH + HL++N ++L +G ++E GP R+ +Y + + + +
Sbjct: 134 IAEGQWYRLVTAMFLHYGVIHLLLNMWALWVLGRSLEANLGPLRFGALYLIAGLGGNVAA 193
Query: 226 YRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMV 277
Y F NS GAS A+FGL FA I+ R + ++ + +++ N+V
Sbjct: 194 YLFSAQNSATAGASTAVFGL---FAALIIIERKL----GRDISQVIPILVINLV 240
>gi|305662826|ref|YP_003859114.1| rhomboid family protein [Ignisphaera aggregans DSM 17230]
gi|304377395|gb|ADM27234.1| Rhomboid family protein [Ignisphaera aggregans DSM 17230]
Length = 452
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 69/137 (50%), Gaps = 15/137 (10%)
Query: 134 TNILLAVNVLVYI----AQFATQ---DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T IL+A N+ VYI F TQ D + + L + Q++R+ TS FLH +I H
Sbjct: 15 TYILIATNIAVYIISSYQNFLTQISDDWVTRYAFVPIMLQEPMQWYRIFTSMFLHGDILH 74
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN--------SPAVGASG 238
+ N + L G +E G RYL +YF S I+++ F PA+GASG
Sbjct: 75 IFFNMWFLYMFGKEVELSLGITRYLAIYFLSGISATLFHTAFIPILGSINLLIPALGASG 134
Query: 239 AIFGLVGSFAVFIMRHR 255
AI G++G++ + R R
Sbjct: 135 AISGVLGAYMMMYPRRR 151
>gi|302787811|ref|XP_002975675.1| hypothetical protein SELMODRAFT_415641 [Selaginella moellendorffii]
gi|300156676|gb|EFJ23304.1| hypothetical protein SELMODRAFT_415641 [Selaginella moellendorffii]
Length = 173
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 27/96 (28%)
Query: 149 FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPR 208
T+++L+LWGAK+ CYS++S+GP +E + G +
Sbjct: 68 IGTENRLILWGAKLT---------------------------CYSVHSLGPHLESLGGSK 100
Query: 209 RYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
R+L V+ +A+ + +S+ C SPAVGASGAI GLV
Sbjct: 101 RFLVVFAVAAVTTPCLSFLMCKSPAVGASGAICGLV 136
>gi|207739329|ref|YP_002257722.1| uncharacterized membrane protein [Ralstonia solanacearum IPO1609]
gi|206592703|emb|CAQ59609.1| uncharacterized membrane protein [Ralstonia solanacearum IPO1609]
Length = 197
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 14/135 (10%)
Query: 137 LLAVNVLVYIAQFATQDKLL----LWGAKINSLIDKGQF--WRLATSAFLHANIAHLMVN 190
L+ NV+V++A+ D LL LW + + G F W+L T AFLHA++ HL+ N
Sbjct: 5 LILANVIVFVAELFAGDTLLRSFALWPPGVAGIDAGGGFSPWQLLTYAFLHASVPHLVFN 64
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSY-------RFCNSPAVGASGAIFGL 243
+ + G +E+ G R GV + +++ S+A + P VGASG +FGL
Sbjct: 65 MFGMFMFGRDVERTLG-RVRTGVLYVASVLSAAFTQIAVMGLSTVPAGPIVGASGGVFGL 123
Query: 244 VGSFAVFIMRHRNIL 258
+ ++AV R +L
Sbjct: 124 LLAYAVLFPRRMILL 138
>gi|332157726|ref|YP_004423005.1| hypothetical protein PNA2_0084 [Pyrococcus sp. NA2]
gi|331033189|gb|AEC51001.1| hypothetical protein PNA2_0084 [Pyrococcus sp. NA2]
Length = 192
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
Query: 160 AKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
+IN + G++WRL T+ F H H +N + L +G +E + G +R+L V+F+SA+
Sbjct: 38 GQINYFVLTGEWWRLITAIFTHVGFIHFGLNIFWLFYLGMDLEGLVGTKRFLIVFFASAL 97
Query: 220 ASSAMSYRFCNSPAV---GASGAIFGLVGS 246
+ +S F P V GASG +FG+VG+
Sbjct: 98 VGNLLS-LFTLPPNVISAGASGGLFGVVGA 126
>gi|407278578|ref|ZP_11107048.1| rhomboid family protein [Rhodococcus sp. P14]
Length = 259
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 26/167 (15%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL-------------LWGAKINSLIDKGQFWRLATSAFL 180
T IL+A+N ++ A ++ LW I + + ++ R+ S FL
Sbjct: 37 TYILIALNTAIFAITAAQSGSVMNNERSSSLFFEWALWPPMIAA---RDEYIRVLGSGFL 93
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASG 238
H + HL VN ++L IG E + G RYL VY S + SA + + AV GASG
Sbjct: 94 HFGVLHLAVNMFALYVIGRDTELVLGRLRYLAVYLVSILGGSA-AVMLLETGAVTAGASG 152
Query: 239 AIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
A+FGL+G+ AV +MR R + LA +++ N+V S I
Sbjct: 153 AVFGLLGAQAVILMRLR------RSPAPVLA-IVVLNVVISITIPGI 192
>gi|452959086|gb|EME64427.1| rhomboid family protein [Rhodococcus ruber BKS 20-38]
Length = 308
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 24/166 (14%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL-------------LWGAKINSLIDKGQFWRLATSAFL 180
T IL+A+N ++ A ++ LW I + + ++ R+ S FL
Sbjct: 86 TYILIALNTAIFAITAAQSGSVMNNERSSSLFFEWALWPPMIAA---RDEYIRVLGSGFL 142
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGA 239
H + HL VN ++L IG E + G RYL VY S + SA ++ GASGA
Sbjct: 143 HFGVLHLAVNMFALYVIGRDTELVLGRLRYLAVYLVSILGGSAAVMLLETDAVTAGASGA 202
Query: 240 IFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
+FGL+G+ AV +MR R + LA +++ N+V S I
Sbjct: 203 VFGLLGAQAVILMRLR------RSPAPVLA-IVVLNVVISITIPGI 241
>gi|367470265|ref|ZP_09469978.1| Rhomboid family protein [Patulibacter sp. I11]
gi|365814662|gb|EHN09847.1| Rhomboid family protein [Patulibacter sp. I11]
Length = 254
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 8/123 (6%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
G L+ G+ WRL T FLH+ + H+ N L +G +E+ G R+ VY ++
Sbjct: 67 GVLFGPLVHDGELWRLVTGGFLHSGLLHIGFNMLLLYWLGTEIERRLGSFRFGLVYLTAL 126
Query: 219 IASSAMS-YRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQ-HLAKVIIFNM 276
+ S + + +P VGASGA+FGL+G +A+ MR + G LQ + ++IFN+
Sbjct: 127 LGGSLGALVQTTATPTVGASGAVFGLMG-YALVEMRRQ-----GVNPLQSQIGFLLIFNV 180
Query: 277 VCS 279
V S
Sbjct: 181 VLS 183
>gi|333917705|ref|YP_004491286.1| rhomboid family protein [Amycolicicoccus subflavus DQS3-9A1]
gi|333479926|gb|AEF38486.1| Rhomboid family protein [Amycolicicoccus subflavus DQS3-9A1]
Length = 255
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIA-SSAM 224
+ G++ RL S FLH HL+VN ++L +G +E + G RYL VY S ++ S+A+
Sbjct: 73 VAAGEYERLIGSGFLHYGPIHLLVNMFALFIVGREIELVLGRWRYLAVYAISLLSGSAAV 132
Query: 225 SYRFCNSPAVGASGAIFGLVGSFAVFIMRHRN 256
+ ++ GASGA+FGL G+ AV + R R
Sbjct: 133 MWMQIDAATAGASGAVFGLFGALAVILTRLRQ 164
>gi|419699532|ref|ZP_14227148.1| hypothetical protein OQA_03208 [Escherichia coli SCI-07]
gi|422382490|ref|ZP_16462650.1| peptidase, S54 family protein [Escherichia coli MS 57-2]
gi|432731340|ref|ZP_19966178.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE45]
gi|432758418|ref|ZP_19992922.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE46]
gi|324006274|gb|EGB75493.1| peptidase, S54 family protein [Escherichia coli MS 57-2]
gi|380349547|gb|EIA37819.1| hypothetical protein OQA_03208 [Escherichia coli SCI-07]
gi|431278248|gb|ELF69242.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE45]
gi|431311628|gb|ELF99786.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE46]
Length = 625
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L ++G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|227884370|ref|ZP_04002175.1| S54 (rhomboid) family peptidase [Escherichia coli 83972]
gi|300989984|ref|ZP_07179060.1| peptidase, S54 family protein [Escherichia coli MS 45-1]
gi|301049847|ref|ZP_07196786.1| peptidase, S54 family protein [Escherichia coli MS 185-1]
gi|386628203|ref|YP_006147923.1| hypothetical protein i02_0710 [Escherichia coli str. 'clone D i2']
gi|386633123|ref|YP_006152842.1| hypothetical protein i14_0710 [Escherichia coli str. 'clone D i14']
gi|386638028|ref|YP_006104826.1| intramembrane serine protease rhomboid family [Escherichia coli ABU
83972]
gi|422365214|ref|ZP_16445716.1| peptidase, S54 family protein [Escherichia coli MS 153-1]
gi|432410677|ref|ZP_19653360.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE39]
gi|432430725|ref|ZP_19673170.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE187]
gi|432435253|ref|ZP_19677654.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE188]
gi|432455538|ref|ZP_19697740.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE201]
gi|432494478|ref|ZP_19736296.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE214]
gi|432503317|ref|ZP_19745054.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE220]
gi|432522762|ref|ZP_19759901.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE230]
gi|432567448|ref|ZP_19803975.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE53]
gi|432591727|ref|ZP_19828056.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE60]
gi|432606493|ref|ZP_19842689.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE67]
gi|432650137|ref|ZP_19885899.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE87]
gi|432782516|ref|ZP_20016702.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE63]
gi|432842896|ref|ZP_20076317.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE141]
gi|432994404|ref|ZP_20183021.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE218]
gi|432998823|ref|ZP_20187363.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE223]
gi|433056969|ref|ZP_20244053.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE124]
gi|433114560|ref|ZP_20300376.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE153]
gi|433124177|ref|ZP_20309768.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE160]
gi|433138238|ref|ZP_20323525.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE167]
gi|433148066|ref|ZP_20333132.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE174]
gi|433206792|ref|ZP_20390491.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE97]
gi|433211538|ref|ZP_20395153.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE99]
gi|442606883|ref|ZP_21021678.1| Putative membrane protein [Escherichia coli Nissle 1917]
gi|227838456|gb|EEJ48922.1| S54 (rhomboid) family peptidase [Escherichia coli 83972]
gi|300298399|gb|EFJ54784.1| peptidase, S54 family protein [Escherichia coli MS 185-1]
gi|300407259|gb|EFJ90797.1| peptidase, S54 family protein [Escherichia coli MS 45-1]
gi|307552520|gb|ADN45295.1| intramembrane serine protease rhomboid family [Escherichia coli ABU
83972]
gi|315292079|gb|EFU51431.1| peptidase, S54 family protein [Escherichia coli MS 153-1]
gi|355419102|gb|AER83299.1| hypothetical protein i02_0710 [Escherichia coli str. 'clone D i2']
gi|355424022|gb|AER88218.1| hypothetical protein i14_0710 [Escherichia coli str. 'clone D i14']
gi|430938613|gb|ELC58854.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE39]
gi|430956347|gb|ELC75023.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE187]
gi|430966832|gb|ELC84195.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE188]
gi|430985410|gb|ELD02016.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE201]
gi|431027994|gb|ELD41039.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE214]
gi|431042319|gb|ELD52811.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE220]
gi|431054882|gb|ELD64451.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE230]
gi|431103281|gb|ELE07951.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE53]
gi|431133171|gb|ELE35169.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE60]
gi|431140715|gb|ELE42481.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE67]
gi|431193508|gb|ELE92844.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE87]
gi|431332228|gb|ELG19471.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE63]
gi|431397424|gb|ELG80880.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE141]
gi|431509738|gb|ELH87987.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE218]
gi|431514392|gb|ELH92234.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE223]
gi|431573956|gb|ELI46745.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE124]
gi|431637060|gb|ELJ05179.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE153]
gi|431650280|gb|ELJ17617.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE160]
gi|431665207|gb|ELJ31934.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE167]
gi|431676959|gb|ELJ43042.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE174]
gi|431732884|gb|ELJ96332.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE97]
gi|431736193|gb|ELJ99535.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE99]
gi|441712190|emb|CCQ07655.1| Putative membrane protein [Escherichia coli Nissle 1917]
Length = 625
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L ++G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|432800897|ref|ZP_20034885.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE84]
gi|431351089|gb|ELG37887.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE84]
Length = 625
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L ++G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|238061764|ref|ZP_04606473.1| rhomboid family protein [Micromonospora sp. ATCC 39149]
gi|237883575|gb|EEP72403.1| rhomboid family protein [Micromonospora sp. ATCC 39149]
Length = 303
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 9/122 (7%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
I +G+++RL T+ FLH + HL++N ++L +G ++E GP R+L +Y + + +
Sbjct: 134 IVQGEWYRLVTAMFLHYGVVHLLLNMWALWVLGRSLEANLGPLRFLALYLIAGFGGNVAA 193
Query: 226 YRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFA 283
Y F N+ GAS AIFGL FA I+ R + ++ + V++ N+V +
Sbjct: 194 YLFSAENATTAGASTAIFGL---FAALIVIERRM----GRDISSVLPVLVINLVFTLTVP 246
Query: 284 NI 285
I
Sbjct: 247 GI 248
>gi|115379487|ref|ZP_01466582.1| rhomboid family protein [Stigmatella aurantiaca DW4/3-1]
gi|310822642|ref|YP_003955000.1| rhomboid family protein [Stigmatella aurantiaca DW4/3-1]
gi|115363496|gb|EAU62636.1| rhomboid family protein [Stigmatella aurantiaca DW4/3-1]
gi|309395714|gb|ADO73173.1| Rhomboid family protein [Stigmatella aurantiaca DW4/3-1]
Length = 236
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 15/132 (11%)
Query: 131 RQWTNILLAV----NVLVYIAQFATQDKLLLWG----------AKINSLIDKGQFWRLAT 176
R+WT + AV V+ ++ F + L+ G A LI +GQ WR+ T
Sbjct: 24 RRWTPVCSAVLALSVVMFFLDGFLLRQGLIPGGDWLERVGKPLALYGPLIQQGQPWRVLT 83
Query: 177 SAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVG 235
AF H HL+ N + ++GP++E+ G R+LG+ + + S+A + F + P VG
Sbjct: 84 YAFEHGGPIHLLFNMSAAFTLGPSLERAIGSWRFLGLSLVTCVGSAAFALLFDFDQPTVG 143
Query: 236 ASGAIFGLVGSF 247
ASG I G +G+
Sbjct: 144 ASGMILGWLGAL 155
>gi|432601198|ref|ZP_19837451.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE66]
gi|431143593|gb|ELE45316.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE66]
Length = 625
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEAVDQSALIHLGANVTSLTLSGESWRLLSSVFLHSSFPHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L ++ S + S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGAVAERILGKWRLLIIWLFSGVFGGLTSACYALRESEQIVISVGASGAIMGIAGA 142
>gi|410458664|ref|ZP_11312422.1| hypothetical protein BAZO_05780 [Bacillus azotoformans LMG 9581]
gi|409931259|gb|EKN68245.1| hypothetical protein BAZO_05780 [Bacillus azotoformans LMG 9581]
Length = 198
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+LL G N + G++WRL T FLH++ H++ N +SL GP +E++ G ++
Sbjct: 39 QQLLYLGIGSNYDVYNGEYWRLLTPIFLHSSFGHMLFNSFSLAIFGPALERMLGKPIFII 98
Query: 213 VYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK 270
Y S + ++ +Y N +G+S AIFGL G + ++ ++++ + Q +
Sbjct: 99 TYLLSGVLANIGTYFVAPINYYHLGSSSAIFGLFGVYLYMVIYRKDLI--DRMNSQIIIS 156
Query: 271 VIIFNMVCS 279
+++ MV +
Sbjct: 157 ILVIGMVMT 165
>gi|194688302|gb|ACF78235.1| unknown [Zea mays]
Length = 336
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 68/130 (52%), Gaps = 7/130 (5%)
Query: 150 ATQDKL--LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
AT KL L+W + ++ + Q WRL T +LHA +AHL+ N SL IG +E+ G
Sbjct: 105 ATLQKLGALVW----DKVVREHQGWRLVTCIWLHAGVAHLLANMISLVLIGLRLEQQFGY 160
Query: 208 RRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQ 266
R +Y S + S +S F N+ +VGASGA+FGL+G+ + + I L
Sbjct: 161 VRVGIIYLVSGVGGSVLSSLFIRNNISVGASGALFGLLGAMLSELFTNWTIYANKAAALV 220
Query: 267 HLAKVIIFNM 276
L VI N+
Sbjct: 221 TLLVVIAINL 230
>gi|154505636|ref|ZP_02042374.1| hypothetical protein RUMGNA_03175 [Ruminococcus gnavus ATCC 29149]
gi|336431736|ref|ZP_08611578.1| hypothetical protein HMPREF0991_00697 [Lachnospiraceae bacterium
2_1_58FAA]
gi|153794075|gb|EDN76495.1| putative rhomboid protease GluP [Ruminococcus gnavus ATCC 29149]
gi|336019755|gb|EGN49477.1| hypothetical protein HMPREF0991_00697 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 200
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 60/105 (57%), Gaps = 6/105 (5%)
Query: 158 WGAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFS 216
+GA LI + Q++RL T FLH I HLM N L ++G +EK G ++L +YF
Sbjct: 39 YGAMYPPLIFEDAQYYRLITCIFLHFGIDHLMNNMVMLGALGWNLEKEIGSFKFLLIYFV 98
Query: 217 SAIA----SSAMSYRFCN-SPAVGASGAIFGLVGSFAVFIMRHRN 256
S I S AM + N + + GASGAIFGL+G+ ++R+R
Sbjct: 99 SGIGANLISLAMDFYTGNLAVSAGASGAIFGLLGALLWVVIRNRG 143
>gi|300742642|ref|ZP_07072663.1| rhomboid family protein [Rothia dentocariosa M567]
gi|300381827|gb|EFJ78389.1| rhomboid family protein [Rothia dentocariosa M567]
Length = 261
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 72/132 (54%), Gaps = 10/132 (7%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL--LWGAKINSLIDKGQFWRLATSAFLHA--NIAHLMV 189
T L+ +NV+VY+ Q + ++ K + G+++R+ TS FLH+ + +H+++
Sbjct: 76 TYTLIGINVVVYLLQLIIPQYWVYSMFALKWDYTEFTGEYYRVLTSGFLHSQNDYSHIVM 135
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP---AVGASGAIFGLVGS 246
N SL G +E++ G RYL VY S + S + P VGASG IFGL+G+
Sbjct: 136 NMLSLYIFGIALEQMMGWWRYLLVYLLSIVGGS-FGVLLLDDPTAEVVGASGGIFGLIGA 194
Query: 247 FAVF--IMRHRN 256
+ V I+R R+
Sbjct: 195 YLVIMVILRERD 206
>gi|239916634|ref|YP_002956192.1| hypothetical protein Mlut_00720 [Micrococcus luteus NCTC 2665]
gi|239837841|gb|ACS29638.1| uncharacterized membrane protein [Micrococcus luteus NCTC 2665]
Length = 313
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 83/155 (53%), Gaps = 16/155 (10%)
Query: 134 TNILLAVNVLVYIAQFATQDKL-----LLWGAKINSLIDKGQFWRLATSAFLH--ANIAH 186
T ILLAV +VY AQ+ T+D+ LW A + + + WR+A+ A +H + H
Sbjct: 93 TWILLAVTAVVYAAQWMTRDQASGVTEALWYAGLYTSPYGMEPWRMASYALVHDVSGPTH 152
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS--PAVGASGAIFGLV 244
L++N +L IG +E G R+L +Y SA+ + + + P VGASGA++G+
Sbjct: 153 LLLNMLALWVIGRVLEPALGWWRFLALYVLSAVGGAVFALWVSDPLQPVVGASGAVYGM- 211
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCS 279
FA + R + GG +++ +A +I N+V S
Sbjct: 212 --FAALFLLTR-VRGG---QVRSIAVLIGLNLVFS 240
>gi|187920241|ref|YP_001889272.1| rhomboid family protein [Burkholderia phytofirmans PsJN]
gi|187718679|gb|ACD19902.1| Rhomboid family protein [Burkholderia phytofirmans PsJN]
Length = 198
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 136 ILLAVNVLVYIAQFATQDKLL----LWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
+L+ +N ++ + D+L+ LW A +S + W+L T +FLHAN HL VN
Sbjct: 4 MLVVLNTAAFLIEQLDPDRLIGLFALWPATSSSGVPAFHIWQLLTYSFLHANFMHLAVNM 63
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF------CNSPAVGASGAIFGLVG 245
+ L G +E G + +YF+S ++ + + +PA+GAS +FGL+
Sbjct: 64 FGLYMFGRDVESTIGRAHLVLLYFTSVLSGALLQLAVGLADVTVRAPAIGASAGVFGLLV 123
Query: 246 SFAVFIMRHRNIL 258
+A+ R R IL
Sbjct: 124 GYALLFPRRRVIL 136
>gi|403380902|ref|ZP_10922959.1| rhomboid family protein [Paenibacillus sp. JC66]
Length = 201
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 80/153 (52%), Gaps = 9/153 (5%)
Query: 134 TNILLAVNVLVYIAQ---FATQD--KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T+++L +N++++I +T D ++ +GA ++WR S FLH HL+
Sbjct: 19 TSLILIINIVLFIIMEVVGSTSDMATMINFGAMFRLSGFSPEWWRYFASMFLHFGFMHLL 78
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGS 246
+NC++L P +E++ G RYL Y S + S +SY + V GASGA++G+ +
Sbjct: 79 MNCFALYVFAPPLERMIGSFRYLLFYLLSGFSGSLISYLLMSERTVSAGASGAVYGVFAA 138
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMVCS 279
+ + +++L + Q + ++I ++ S
Sbjct: 139 YLFLAIFRKDVL--DAQSGQTIKTILIVGLIYS 169
>gi|399041650|ref|ZP_10736664.1| putative membrane protein [Rhizobium sp. CF122]
gi|398060103|gb|EJL51937.1| putative membrane protein [Rhizobium sp. CF122]
Length = 1049
Score = 65.1 bits (157), Expect = 4e-08, Method: Composition-based stats.
Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Query: 150 ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRR 209
+ Q +L + +L+ Q+WRL T+ LH +I HL NC +L G +E++ G R
Sbjct: 299 SIQTLFMLGATQQEALLQDHQWWRLFTAPLLHGSIVHLGFNCLALWFAGRLLERLIGWRW 358
Query: 210 YLGVYFSSAIASSAMSYRFCNSP---AVGASGAIFGLVGSFAVFIMR 253
+ ++F+SA+ + S F N+P VGASG I GL + V R
Sbjct: 359 FAAIFFASALGGAIASVLF-NAPNIVGVGASGGIVGLFAATMVASFR 404
>gi|26246631|ref|NP_752671.1| hypothetical protein c0741 [Escherichia coli CFT073]
gi|26107030|gb|AAN79214.1|AE016757_118 Hypothetical protein c0741 [Escherichia coli CFT073]
Length = 625
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L ++G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|195652545|gb|ACG45740.1| membrane protein [Zea mays]
Length = 334
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 68/130 (52%), Gaps = 7/130 (5%)
Query: 150 ATQDKL--LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
AT KL L+W + ++ + Q WRL T +LHA +AHL+ N SL IG +E+ G
Sbjct: 103 ATLQKLGALVW----DKVVREHQGWRLVTCIWLHAGVAHLLANMISLVLIGLRLEQQFGY 158
Query: 208 RRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQ 266
R +Y S + S +S F N+ +VGASGA+FGL+G+ + + I L
Sbjct: 159 VRVGIIYLVSGVGGSVLSSLFIRNNISVGASGALFGLLGAMLSELFTNWTIYANKAAALV 218
Query: 267 HLAKVIIFNM 276
L VI N+
Sbjct: 219 TLLVVIAINL 228
>gi|383458045|ref|YP_005372034.1| S54 family peptidase [Corallococcus coralloides DSM 2259]
gi|380732947|gb|AFE08949.1| S54 family peptidase [Corallococcus coralloides DSM 2259]
Length = 542
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Query: 153 DKLLLWGAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
+ L+ WGAK L+ D GQ WRL T+ LH + HL +N +G +E+ C Y+
Sbjct: 61 EALIHWGAKSGPLVTDAGQGWRLLTANLLHRDALHLGLNLLVFAGVGTAVERSCRWWDYV 120
Query: 212 GVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRN 256
+ S +A+ A S + + +VGASG +FG VG+ V R R
Sbjct: 121 ALLAVSGLATMAGSLWWSPTVSVGASGWVFGCVGALLVLGRRART 165
>gi|291548753|emb|CBL25015.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Ruminococcus torques L2-14]
Length = 206
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 73/137 (53%), Gaps = 11/137 (8%)
Query: 134 TNILLAVNVLVYIAQFA---TQDK--LLLWGAKINS-LIDKGQFWRLATSAFLHANIAHL 187
T +L+ +N+LV+IA T+D +L GA +I+ +++RL TS FLH I+HL
Sbjct: 10 TIMLIGINILVFIALTMIGRTEDGYFMLQHGAMYEPYIIENQEYYRLFTSLFLHFGISHL 69
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-----NSPAVGASGAIFG 242
+ N L ++G EK G R+L YF S I + +S + + GASGAIFG
Sbjct: 70 LNNMVLLWALGSIFEKEAGKIRFLFCYFISGIGGNLLSLYWNIMHDRQIVSAGASGAIFG 129
Query: 243 LVGSFAVFIMRHRNILG 259
L+G + +R LG
Sbjct: 130 LMGGLLWIVFANRGRLG 146
>gi|294501246|ref|YP_003564946.1| membrane endopeptidase [Bacillus megaterium QM B1551]
gi|294351183|gb|ADE71512.1| membrane endopeptidase [Bacillus megaterium QM B1551]
Length = 506
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 76/126 (60%), Gaps = 6/126 (4%)
Query: 133 WTNILLAVNVLVYIA---QFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T I LA+ +L+++ + +TQ+ L L +GAK N LI +G++WR T LH + HL
Sbjct: 180 FTYIFLALQILMFLFLEWKSSTQNTLTLIQYGAKYNPLIMEGEWWRFFTPVILHIGLLHL 239
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
++N +L +G +E+I G R++ +Y + A S S+ + S + GASGAIFG G+
Sbjct: 240 LMNSVALYYLGTLVERIYGSGRFVFIYIFAGFAGSLGSFIWNTSISAGASGAIFGCFGAL 299
Query: 248 AVFIMR 253
+FI R
Sbjct: 300 -LFIAR 304
>gi|417766158|ref|ZP_12414112.1| peptidase, S54 family [Leptospira interrogans serovar Bulgarica
str. Mallika]
gi|400351612|gb|EJP03831.1| peptidase, S54 family [Leptospira interrogans serovar Bulgarica
str. Mallika]
Length = 514
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 358 LLEWGANRRIETL--AGQWWRLVTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 415
Query: 213 VY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
+Y FS S A + N+ +VGASGAIFGL G+
Sbjct: 416 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGA 450
>gi|422323890|ref|ZP_16404927.1| hypothetical protein HMPREF0737_00037 [Rothia mucilaginosa M508]
gi|353344683|gb|EHB88984.1| hypothetical protein HMPREF0737_00037 [Rothia mucilaginosa M508]
Length = 270
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 6/159 (3%)
Query: 104 NGGGTRKNSGHEGTSHLDTARTNLFIGRQW--TNILLAVNVLVY-IAQFATQDKLLLWGA 160
G G + + ++ T FI R W T L+ +NV+VY + Q + GA
Sbjct: 44 QGAGVVCPDCYRDLNGFASSPTRSFIARHWHITYTLILINVVVYGLQQIIPFRWVYNLGA 103
Query: 161 KINSLIDKGQFWRLATSAFLHA--NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
+ +G+++RL T FLH+ + HL+ N L G ++E++ G ++L VY ++
Sbjct: 104 MSGPSVHRGEYYRLITHGFLHSQNDPMHLVWNMIYLFIFGVSLERMMGRWKFLFVYMAAT 163
Query: 219 IASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMRHRN 256
+ + Y F S VGASG ++GL G+F V ++ R
Sbjct: 164 LGAGFSVYIFDYYSRTVGASGGVYGLYGAFFVILLLRRQ 202
>gi|239617958|ref|YP_002941280.1| Rhomboid family protein [Kosmotoga olearia TBF 19.5.1]
gi|239506789|gb|ACR80276.1| Rhomboid family protein [Kosmotoga olearia TBF 19.5.1]
Length = 285
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 9/121 (7%)
Query: 134 TNILLAVNVLVYIAQFATQ---------DKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T IL+ +N+ VY F + +L++G + +G F+ T+ FLH N+
Sbjct: 10 TIILIIINLAVYFFVFILSHSRRTIDLYNLILIYGGISRGALLRGLFYTPLTALFLHGNM 69
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
H++ N Y+L +G +E I G R++L YF S I + + +G+S AIFGLV
Sbjct: 70 LHILFNMYALFQLGYLVEGIYGMRKFLIFYFVSGIIGNLTAATMTPYITIGSSSAIFGLV 129
Query: 245 G 245
G
Sbjct: 130 G 130
>gi|315658175|ref|ZP_07911047.1| rhomboid family protein [Staphylococcus lugdunensis M23590]
gi|315496504|gb|EFU84827.1| rhomboid family protein [Staphylococcus lugdunensis M23590]
Length = 489
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 65/113 (57%), Gaps = 6/113 (5%)
Query: 137 LLAVNVLVYIAQFATQD-----KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
L+ +N++++++ + KLL G ++ + G+++RL TS FLH N H+++N
Sbjct: 166 LITINIVIWLSMILLLNRFSNIKLLEMGGLVHFNVVHGEWYRLITSMFLHFNFEHILMNM 225
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGL 243
SL G +E I GP + L +Y S + + +S F ++ + GASGAIFGL
Sbjct: 226 LSLFIFGKIVEAIIGPMKMLILYIISGLFGNFLSLSFNTDTVSAGASGAIFGL 278
>gi|418710371|ref|ZP_13271142.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
gi|418725109|ref|ZP_13283785.1| peptidase, S54 family [Leptospira interrogans str. UI 12621]
gi|409961491|gb|EKO25236.1| peptidase, S54 family [Leptospira interrogans str. UI 12621]
gi|410769307|gb|EKR44549.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
Length = 514
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 358 LLEWGANRRIETL--AGQWWRLVTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 415
Query: 213 VY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
+Y FS S A + N+ +VGASGAIFGL G+
Sbjct: 416 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGA 450
>gi|115483002|ref|NP_001065094.1| Os10g0521900 [Oryza sativa Japonica Group]
gi|113639703|dbj|BAF27008.1| Os10g0521900, partial [Oryza sativa Japonica Group]
Length = 338
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 67/130 (51%), Gaps = 7/130 (5%)
Query: 150 ATQDKL--LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
AT K+ L+W + ++ + Q WRL T +LHA + HL+ N SL IG +E+ G
Sbjct: 107 ATLQKMGALVW----DKVVHEHQGWRLVTCIWLHAGVVHLLANMLSLVLIGLRLEQQFGY 162
Query: 208 RRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQ 266
R +Y S I S +S F NS +VGASGA+FGL+G+ + + I L
Sbjct: 163 MRIGIIYLVSGIGGSVLSSLFIRNSISVGASGALFGLLGAMLSELFTNWTIYTNKAAALV 222
Query: 267 HLAKVIIFNM 276
L VI N+
Sbjct: 223 TLLIVIAINL 232
>gi|414867422|tpg|DAA45979.1| TPA: membrane protein [Zea mays]
Length = 334
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 68/130 (52%), Gaps = 7/130 (5%)
Query: 150 ATQDKL--LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
AT KL L+W + ++ + Q WRL T +LHA +AHL+ N SL IG +E+ G
Sbjct: 103 ATLQKLGALVW----DKVVREHQGWRLVTCIWLHAGVAHLLANMISLVLIGLRLEQQFGY 158
Query: 208 RRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQ 266
R +Y S + S +S F N+ +VGASGA+FGL+G+ + + I L
Sbjct: 159 VRVGIIYLVSGVGGSVLSSLFIRNNISVGASGALFGLLGAMLSELFTNWTIYANKAAALV 218
Query: 267 HLAKVIIFNM 276
L VI N+
Sbjct: 219 TLLVVIAINL 228
>gi|289434618|ref|YP_003464490.1| rhomboid family membrane protein [Listeria seeligeri serovar 1/2b
str. SLCC3954]
gi|289170862|emb|CBH27404.1| rhomboid family membrane protein [Listeria seeligeri serovar 1/2b
str. SLCC3954]
Length = 509
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 8/152 (5%)
Query: 108 TRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQD--KLLLWGAKINSL 165
T+ N + + T FIG LL L Q T D L+ WG K N L
Sbjct: 168 TKVNEEQKVARNSKPTVTYTFIG------LLIAAFLWVTFQGGTTDSFNLIKWGGKFNPL 221
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
I G++WR + FLH+ + HL N L +G E+I G RY + I + S
Sbjct: 222 IYAGEWWRFISPIFLHSGLIHLASNAVMLYIVGAWAERIYGKWRYTLILIIGGICGNIAS 281
Query: 226 YRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
+ + ++GAS A+F ++G+ ++ N+
Sbjct: 282 FALNMNLSIGASTAVFAVMGALLYLVVLKPNV 313
>gi|16803377|ref|NP_464862.1| hypothetical protein lmo1337 [Listeria monocytogenes EGD-e]
gi|284801722|ref|YP_003413587.1| hypothetical protein LM5578_1476 [Listeria monocytogenes 08-5578]
gi|284994864|ref|YP_003416632.1| hypothetical protein LM5923_1429 [Listeria monocytogenes 08-5923]
gi|404283828|ref|YP_006684725.1| rhomboid family protein [Listeria monocytogenes SLCC2372]
gi|404410635|ref|YP_006696223.1| rhomboid family protein [Listeria monocytogenes SLCC5850]
gi|405758384|ref|YP_006687660.1| rhomboid family protein [Listeria monocytogenes SLCC2479]
gi|16410753|emb|CAC99415.1| lmo1337 [Listeria monocytogenes EGD-e]
gi|284057284|gb|ADB68225.1| hypothetical protein LM5578_1476 [Listeria monocytogenes 08-5578]
gi|284060331|gb|ADB71270.1| hypothetical protein LM5923_1429 [Listeria monocytogenes 08-5923]
gi|404230461|emb|CBY51865.1| rhomboid family protein [Listeria monocytogenes SLCC5850]
gi|404233330|emb|CBY54733.1| rhomboid family protein [Listeria monocytogenes SLCC2372]
gi|404236266|emb|CBY57668.1| rhomboid family protein [Listeria monocytogenes SLCC2479]
gi|441471011|emb|CCQ20766.1| Rhomboid protease gluP [Listeria monocytogenes]
gi|441474138|emb|CCQ23892.1| Rhomboid protease gluP [Listeria monocytogenes N53-1]
Length = 512
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + H+ N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHIASNAVMLYIVGAWAERIYGKWRYVLIL 270
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
I + S+ + +VGAS A+F ++G+ ++ N+
Sbjct: 271 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNL 313
>gi|340358738|ref|ZP_08681246.1| rhomboid family protein [Actinomyces sp. oral taxon 448 str. F0400]
gi|339885875|gb|EGQ75566.1| rhomboid family protein [Actinomyces sp. oral taxon 448 str. F0400]
Length = 280
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 68/131 (51%), Gaps = 14/131 (10%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
T IL+ V VY+ Q Q + + I + WR T+AFLHA++ HL N ++
Sbjct: 77 TKILVVACVAVYLIQLTHQPLENRFAFVPAAAISEP--WRFVTTAFLHASLWHLAFNMWA 134
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA---------VGASGAIFGLV 244
L +G +E + G R+ +Y SA+ S M Y + SP VGASGA+FGL
Sbjct: 135 LWVLGSALEPVLGRWRFAALYVLSAVGGSTMIY-WLASPVTMSSWWGLTVGASGAVFGLF 193
Query: 245 GSFAVFIMRHR 255
A+FI++HR
Sbjct: 194 A--ALFIIQHR 202
>gi|289550680|ref|YP_003471584.1| membrane peptidase [Staphylococcus lugdunensis HKU09-01]
gi|385784306|ref|YP_005760479.1| rhomboid family protein [Staphylococcus lugdunensis N920143]
gi|418413982|ref|ZP_12987198.1| hypothetical protein HMPREF9308_00363 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|289180212|gb|ADC87457.1| Putative membrane peptidase [Staphylococcus lugdunensis HKU09-01]
gi|339894562|emb|CCB53844.1| rhomboid family protein [Staphylococcus lugdunensis N920143]
gi|410877620|gb|EKS25512.1| hypothetical protein HMPREF9308_00363 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 485
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 65/113 (57%), Gaps = 6/113 (5%)
Query: 137 LLAVNVLVYIAQFA-----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
L+ +N++++++ + KLL G ++ + G+++RL TS FLH N H+++N
Sbjct: 162 LITINIVIWLSMILLLNRFSNIKLLDMGGLVHFNVVHGEWYRLITSMFLHFNFEHILMNM 221
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGL 243
SL G +E I GP + L +Y S + + +S F ++ + GASGAIFGL
Sbjct: 222 LSLFIFGKIVEAIIGPMKMLILYIISGLFGNFLSLSFNTDTVSAGASGAIFGL 274
>gi|47095921|ref|ZP_00233524.1| rhomboid family protein [Listeria monocytogenes str. 1/2a F6854]
gi|254912011|ref|ZP_05262023.1| rhomboid family protein [Listeria monocytogenes J2818]
gi|254936338|ref|ZP_05268035.1| rhomboid family protein [Listeria monocytogenes F6900]
gi|258611432|ref|ZP_05232285.2| rhomboid family protein [Listeria monocytogenes FSL N3-165]
gi|386043648|ref|YP_005962453.1| rhomboid family protein [Listeria monocytogenes 10403S]
gi|386046989|ref|YP_005965321.1| rhomboid family protein [Listeria monocytogenes J0161]
gi|386050313|ref|YP_005968304.1| rhomboid family protein [Listeria monocytogenes FSL R2-561]
gi|386053590|ref|YP_005971148.1| rhomboid family protein [Listeria monocytogenes Finland 1998]
gi|47015667|gb|EAL06597.1| rhomboid family protein [Listeria monocytogenes str. 1/2a F6854]
gi|258599975|gb|EEW13300.1| rhomboid family protein [Listeria monocytogenes FSL N3-165]
gi|258608928|gb|EEW21536.1| rhomboid family protein [Listeria monocytogenes F6900]
gi|293589976|gb|EFF98310.1| rhomboid family protein [Listeria monocytogenes J2818]
gi|345533980|gb|AEO03421.1| rhomboid family protein [Listeria monocytogenes J0161]
gi|345536882|gb|AEO06322.1| rhomboid family protein [Listeria monocytogenes 10403S]
gi|346424159|gb|AEO25684.1| rhomboid family protein [Listeria monocytogenes FSL R2-561]
gi|346646241|gb|AEO38866.1| rhomboid family protein [Listeria monocytogenes Finland 1998]
Length = 518
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + H+ N L +G E+I G RY+ +
Sbjct: 217 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHIASNAVMLYIVGAWAERIYGKWRYVLIL 276
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
I + S+ + +VGAS A+F ++G+ ++ N+
Sbjct: 277 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNL 319
>gi|404413413|ref|YP_006699000.1| rhomboid family protein [Listeria monocytogenes SLCC7179]
gi|404239112|emb|CBY60513.1| rhomboid family protein [Listeria monocytogenes SLCC7179]
Length = 512
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + H+ N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHIASNAVMLYIVGAWAERIYGKWRYVLIL 270
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
I + S+ + +VGAS A+F ++G+ ++ N+
Sbjct: 271 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNL 313
>gi|374310995|ref|YP_005057425.1| Peptidase S54, rhomboid domain protein [Granulicella mallensis
MP5ACTX8]
gi|358753005|gb|AEU36395.1| Peptidase S54, rhomboid domain protein [Granulicella mallensis
MP5ACTX8]
Length = 284
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 87/198 (43%), Gaps = 37/198 (18%)
Query: 108 TRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQF------------------ 149
TR+ + +S LD T L IG +N+LV+ F
Sbjct: 11 TRRRNDDRHSSLLDYPATYLLIG---------INLLVFAIMFRYSPALPLMRQHISWQIL 61
Query: 150 -ATQD--KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICG 206
A+ D LL +G + + GQ+WRL TS F+H I HL++N + L ++G E + G
Sbjct: 62 TASFDVNTLLRFGGSDAAYVMNGQWWRLITSTFVHVTILHLVLNMWCLWNLGLFGEPLLG 121
Query: 207 PRRYLGVYFSSAIASSAMSYRFC-----NSPAVGASGAIFGLVGSFAVFIMRHRNILGGG 261
+ VY + A +S +S GASGAIFGL G V + + L
Sbjct: 122 RPGLIAVYLLTGTAGMMLSLTLSVAQQQDSLVAGASGAIFGLAGILIVLLSNRK--LAAP 179
Query: 262 KEELQHLAKVIIFNMVCS 279
+EL+ L + +I+ V +
Sbjct: 180 WKELRSLRRSVIWFAVLN 197
>gi|418695529|ref|ZP_13256548.1| peptidase, S54 family [Leptospira kirschneri str. H1]
gi|409956614|gb|EKO15536.1| peptidase, S54 family [Leptospira kirschneri str. H1]
Length = 514
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 56/95 (58%), Gaps = 5/95 (5%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA+ HL N + L +E I G R+L
Sbjct: 358 LLEWGANRRIETL--AGQWWRLLTNVFVHASFPHLFFNGFGLIISAIFVEPILGRIRFLI 415
Query: 213 VY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
+Y FS S A + N+ +VGASGAIFGL G+
Sbjct: 416 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGA 450
>gi|417761549|ref|ZP_12409558.1| peptidase, S54 family [Leptospira interrogans str. 2002000624]
gi|417776479|ref|ZP_12424317.1| peptidase, S54 family [Leptospira interrogans str. 2002000621]
gi|418671929|ref|ZP_13233275.1| peptidase, S54 family [Leptospira interrogans str. 2002000623]
gi|409942630|gb|EKN88238.1| peptidase, S54 family [Leptospira interrogans str. 2002000624]
gi|410573846|gb|EKQ36890.1| peptidase, S54 family [Leptospira interrogans str. 2002000621]
gi|410581051|gb|EKQ48866.1| peptidase, S54 family [Leptospira interrogans str. 2002000623]
Length = 514
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 358 LLEWGANRRIETL--AGQWWRLVTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 415
Query: 213 VY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
+Y FS S A + N+ +VGASGAIFGL G+
Sbjct: 416 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGA 450
>gi|433197241|ref|ZP_20381167.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE94]
gi|431725428|gb|ELJ89282.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE94]
Length = 625
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSIFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L ++G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|375088668|ref|ZP_09735006.1| hypothetical protein HMPREF9703_01088 [Dolosigranulum pigrum ATCC
51524]
gi|374561633|gb|EHR32972.1| hypothetical protein HMPREF9703_01088 [Dolosigranulum pigrum ATCC
51524]
Length = 232
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 153 DKLLLWGAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
+ L++ GAK N LI ++WRL T FLH + HL+ N + +G +E I G R+
Sbjct: 41 ESLIIMGAKFNELIIYNNEWWRLITPIFLHIGVPHLLFNMLVVYFLGQQIEFIFGHVRFA 100
Query: 212 GVYFSSAIASSAMSYRFCNSPAVGASGAIFGL 243
+Y S + +A S+ F S + GAS AIFGL
Sbjct: 101 LLYLFSGLMGNAFSFAFNTSLSAGASTAIFGL 132
>gi|384044908|ref|YP_005492925.1| serine protease of Rhomboid family, contains TPR repeats [Bacillus
megaterium WSH-002]
gi|345442599|gb|AEN87616.1| Serine protease of Rhomboid family, contains TPR repeats [Bacillus
megaterium WSH-002]
Length = 481
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 76/126 (60%), Gaps = 6/126 (4%)
Query: 133 WTNILLAVNVLVYIA---QFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T I LA+ +L+++ + +TQ+ L L +GAK N LI +G++WR T LH + HL
Sbjct: 155 FTYIFLALQILMFLFLEWKSSTQNTLTLIQYGAKYNPLIMEGEWWRFFTPIILHIGLLHL 214
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
++N +L +G +E+I G R++ +Y + A S S+ + S + GASGAIFG G+
Sbjct: 215 LMNSVALYYLGTLVERIYGSGRFVFIYIFAGFAGSLGSFIWNTSISAGASGAIFGCFGAL 274
Query: 248 AVFIMR 253
+FI R
Sbjct: 275 -LFIAR 279
>gi|52078997|ref|YP_077788.1| hypothetical protein BL02214 [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319648699|ref|ZP_08002910.1| YdcA protein [Bacillus sp. BT1B_CT2]
gi|404487870|ref|YP_006711976.1| transmembrane protein YdcA [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|423680901|ref|ZP_17655740.1| hypothetical protein MUY_00712 [Bacillus licheniformis WX-02]
gi|52002208|gb|AAU22150.1| conserved membrane protein YdcA [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|52346871|gb|AAU39505.1| putative transmembrane protein YdcA [Bacillus licheniformis DSM 13
= ATCC 14580]
gi|317389118|gb|EFV69934.1| YdcA protein [Bacillus sp. BT1B_CT2]
gi|383442007|gb|EID49716.1| hypothetical protein MUY_00712 [Bacillus licheniformis WX-02]
Length = 199
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 5/137 (3%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKI---NSLIDKGQFWRLATSAFLHANIAHLMVN 190
T+ +LA+ + ++I + +W + N I G++WR T F+HA HL+ N
Sbjct: 18 TSAILALQLAIWILFLFPFTAVQMWSDLLIGFNWGIANGEWWRFVTPIFIHAGFGHLLFN 77
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFA 248
S+ P +E++ G ++L VY + + + +Y VGASGAIFGL G +
Sbjct: 78 SMSIFLFAPGLERMLGKLKFLIVYIGAGVIGNIGTYFIEPLEYMHVGASGAIFGLFGVYL 137
Query: 249 VFIMRHRNILGGGKEEL 265
++ + ++G ++
Sbjct: 138 YIVLFRKELMGSANSQI 154
>gi|125575434|gb|EAZ16718.1| hypothetical protein OsJ_32194 [Oryza sativa Japonica Group]
Length = 253
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 67/127 (52%), Gaps = 2/127 (1%)
Query: 152 QDKLLLWGAKI-NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRY 210
+++L GA + + ++ + Q WRL T +LHA + HL+ N SL IG +E+ G R
Sbjct: 21 EERLQKMGALVWDKVVHEHQGWRLVTCIWLHAGVVHLLANMLSLVLIGLRLEQQFGYMRI 80
Query: 211 LGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLA 269
+Y S I S +S F NS +VGASGA+FGL+G+ + + I L L
Sbjct: 81 GIIYLVSGIGGSVLSSLFIRNSISVGASGALFGLLGAMLSELFTNWTIYTNKAAALVTLL 140
Query: 270 KVIIFNM 276
VI N+
Sbjct: 141 IVIAINL 147
>gi|110640878|ref|YP_668606.1| outer membrane protein [Escherichia coli 536]
gi|191173980|ref|ZP_03035498.1| peptidase, S54 (rhomboid) family [Escherichia coli F11]
gi|300996647|ref|ZP_07181505.1| peptidase, S54 family protein [Escherichia coli MS 200-1]
gi|422378265|ref|ZP_16458488.1| peptidase, S54 family protein [Escherichia coli MS 60-1]
gi|432470046|ref|ZP_19712099.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE206]
gi|432712334|ref|ZP_19947386.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE8]
gi|433076810|ref|ZP_20263376.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE131]
gi|110342470|gb|ABG68707.1| outer membrane protein [Escherichia coli 536]
gi|190905756|gb|EDV65377.1| peptidase, S54 (rhomboid) family [Escherichia coli F11]
gi|300304476|gb|EFJ58996.1| peptidase, S54 family protein [Escherichia coli MS 200-1]
gi|324010382|gb|EGB79601.1| peptidase, S54 family protein [Escherichia coli MS 60-1]
gi|431000113|gb|ELD16187.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE206]
gi|431259849|gb|ELF52212.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE8]
gi|431601387|gb|ELI70904.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE131]
Length = 625
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSIFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L ++G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|312193973|ref|YP_004014034.1| rhomboid family protein [Frankia sp. EuI1c]
gi|311225309|gb|ADP78164.1| Rhomboid family protein [Frankia sp. EuI1c]
Length = 390
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 164 SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA 223
+ K ++WRL T+AFLH ++ H+ N Y+L +G +E I G RYL ++F+ AI +
Sbjct: 216 DIAQKHEYWRLVTAAFLHGSVLHIAFNMYALFLLGTQLEAILGRVRYLALFFACAIGGNT 275
Query: 224 MSYRFCNSPA--VGASGAIFGLVGSFAVFIMRHR 255
+SY + A GAS AIFG ++ + R R
Sbjct: 276 LSYVIHDEKAFSYGASTAIFGFFAAYYLIARRLR 309
>gi|421107208|ref|ZP_15567763.1| peptidase, S54 family [Leptospira kirschneri str. H2]
gi|410007727|gb|EKO61413.1| peptidase, S54 family [Leptospira kirschneri str. H2]
Length = 514
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 358 LLEWGANRRIETL--AGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 415
Query: 213 VY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
+Y FS S A + N+ +VGASGAIFGL G+
Sbjct: 416 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGA 450
>gi|398339922|ref|ZP_10524625.1| hypothetical protein LkirsB1_10989 [Leptospira kirschneri serovar
Bim str. 1051]
Length = 514
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 358 LLEWGANRRIETL--AGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 415
Query: 213 VY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
+Y FS S A + N+ +VGASGAIFGL G+
Sbjct: 416 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGA 450
>gi|414867424|tpg|DAA45981.1| TPA: hypothetical protein ZEAMMB73_979905 [Zea mays]
Length = 254
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
+ ++ + Q WRL T +LHA +AHL+ N SL IG +E+ G R +Y S + S
Sbjct: 28 DKVVREHQGWRLVTCIWLHAGVAHLLANMISLVLIGLRLEQQFGYVRVGIIYLVSGVGGS 87
Query: 223 AMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNM 276
+S F N+ +VGASGA+FGL+G+ + + I L L VI N+
Sbjct: 88 VLSSLFIRNNISVGASGALFGLLGAMLSELFTNWTIYANKAAALVTLLVVIAINL 142
>gi|340502629|gb|EGR29302.1| rhomboid family protein, putative [Ichthyophthirius multifiliis]
Length = 255
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 152 QDKLLLWGAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRY 210
Q L+ +GA + SLI ++ Q WR T+AFLHAN H+ N S ++E G
Sbjct: 70 QQVLIKYGANVPSLIKNENQLWRFVTAAFLHANFLHIFFNMISTFIFVSSLEHTYGFFTV 129
Query: 211 LGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNIL 258
++ SAI + S F NS AVGAS A+FG++G + +++ + N L
Sbjct: 130 FYIWILSAIGGNIFSADFATQNSIAVGASTALFGMIGLYLAYLILNWNAL 179
>gi|418679207|ref|ZP_13240471.1| peptidase, S54 family [Leptospira kirschneri serovar Grippotyphosa
str. RM52]
gi|418686873|ref|ZP_13248037.1| peptidase, S54 family [Leptospira kirschneri serovar Grippotyphosa
str. Moskva]
gi|421090060|ref|ZP_15550861.1| peptidase, S54 family [Leptospira kirschneri str. 200802841]
gi|400320332|gb|EJO68202.1| peptidase, S54 family [Leptospira kirschneri serovar Grippotyphosa
str. RM52]
gi|410001323|gb|EKO51937.1| peptidase, S54 family [Leptospira kirschneri str. 200802841]
gi|410738580|gb|EKQ83314.1| peptidase, S54 family [Leptospira kirschneri serovar Grippotyphosa
str. Moskva]
Length = 514
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 358 LLEWGANRRIETL--AGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 415
Query: 213 VY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
+Y FS S A + N+ +VGASGAIFGL G+
Sbjct: 416 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGA 450
>gi|261886402|ref|ZP_06010441.1| rhomboid family protein [Campylobacter fetus subsp. venerealis str.
Azul-94]
Length = 172
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 67/121 (55%), Gaps = 8/121 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDKL---LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+A+N +VY +++ + + +G +N L +G +W+L T+ FLH ++ H+++N
Sbjct: 4 TPFLIAINAVVYFLEYSVYNSRSFSIFFG--LNELFFEGAYWQLITTMFLHGSLMHILMN 61
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS---YRFCNSPAVGASGAIFGLVGSF 247
L G +E+ G ++L +Y + +SA+S F N VGASGAI L+G
Sbjct: 62 MAVLYQFGMLLERYLGSVKFLLLYIVGGVITSALSLSYLMFANVNLVGASGAISVLLGFM 121
Query: 248 A 248
A
Sbjct: 122 A 122
>gi|212722852|ref|NP_001132594.1| uncharacterized protein LOC100194066 [Zea mays]
gi|194694850|gb|ACF81509.1| unknown [Zea mays]
Length = 248
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
+ ++ + Q WRL T +LHA +AHL+ N SL IG +E+ G R +Y S + S
Sbjct: 28 DKVVREHQGWRLVTCIWLHAGVAHLLANMISLVLIGLRLEQQFGYVRVGIIYLVSGVGGS 87
Query: 223 AMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNM 276
+S F N+ +VGASGA+FGL+G+ + + I L L VI N+
Sbjct: 88 VLSSLFIRNNISVGASGALFGLLGAMLSELFTNWTIYANKAAALVTLLVVIAINL 142
>gi|418741786|ref|ZP_13298160.1| peptidase, S54 family [Leptospira kirschneri serovar Valbuzzi str.
200702274]
gi|410751234|gb|EKR08213.1| peptidase, S54 family [Leptospira kirschneri serovar Valbuzzi str.
200702274]
Length = 514
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 358 LLEWGANRRIETL--AGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 415
Query: 213 VY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
+Y FS S A + N+ +VGASGAIFGL G+
Sbjct: 416 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGA 450
>gi|310823474|ref|YP_003955832.1| hypothetical protein STAUR_6248 [Stigmatella aurantiaca DW4/3-1]
gi|309396546|gb|ADO74005.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
Length = 557
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 6/154 (3%)
Query: 111 NSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQ-----DKLLLWGAKINSL 165
S EG D R + + W + L + A ++Q D ++ +GAK+ L
Sbjct: 30 KSPPEGPWVQDGPRGDRWKRLPWVTLGLVLVQFSVYAWTSSQGLLDVDAMVRFGAKVGPL 89
Query: 166 I-DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
+ + G+ WRL T+ FLH + AH+ +N L ++G +E Y V +S +++
Sbjct: 90 MTEAGEPWRLVTANFLHRDGAHVGLNMLVLLAVGWVLEGTWRRWDYAAVLVASGLSTMTA 149
Query: 225 SYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNIL 258
S + +VGASG +G VG V RHR +L
Sbjct: 150 SLLWAEEVSVGASGMAYGCVGGLIVLGRRHRAVL 183
>gi|300937875|ref|ZP_07152668.1| peptidase, S54 family protein [Escherichia coli MS 21-1]
gi|432679090|ref|ZP_19914490.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE143]
gi|300457118|gb|EFK20611.1| peptidase, S54 family protein [Escherichia coli MS 21-1]
gi|431224488|gb|ELF21709.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE143]
Length = 625
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 65/120 (54%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L V+ S + +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGAVAERILGKWRLLIVWLFSGVFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|311112557|ref|YP_003983779.1| rhomboid family protein [Rothia dentocariosa ATCC 17931]
gi|310944051|gb|ADP40345.1| rhomboid family protein [Rothia dentocariosa ATCC 17931]
Length = 261
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 10/132 (7%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL--LWGAKINSLIDKGQFWRLATSAFLHA--NIAHLMV 189
T L+ +NV+VY+ Q + ++ K + G+++R+ TS FLH+ + +H+++
Sbjct: 76 TYTLIGINVVVYLLQLIIPQYWVYSMFALKWDYTEFTGEYYRVLTSGFLHSQNDYSHIVM 135
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP---AVGASGAIFGLVGS 246
N SL G +E++ G RYL VY S + S + P VGASG IFGL+G+
Sbjct: 136 NMLSLYIFGIALEQMMGWWRYLLVYLLSIVGGS-FGVLLLDDPTAEVVGASGGIFGLIGA 194
Query: 247 FAVF--IMRHRN 256
+ V ++R R+
Sbjct: 195 YLVIMVVLRERD 206
>gi|418701499|ref|ZP_13262424.1| peptidase, S54 family [Leptospira interrogans serovar Bataviae str.
L1111]
gi|410759581|gb|EKR25793.1| peptidase, S54 family [Leptospira interrogans serovar Bataviae str.
L1111]
Length = 514
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 358 LLEWGANRRIETL--AGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 415
Query: 213 VY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
+Y FS S A + N+ +VGASGAIFGL G+
Sbjct: 416 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGA 450
>gi|296005098|ref|XP_002808884.1| rhomboid protease ROM3, putative [Plasmodium falciparum 3D7]
gi|225632283|emb|CAX64162.1| rhomboid protease ROM3, putative [Plasmodium falciparum 3D7]
Length = 267
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 58/101 (57%), Gaps = 5/101 (4%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+L GA LI +GQ+WRL FLHAN+ HL++N + ++G +E ++L +Y
Sbjct: 73 LILLGATYGPLIKEGQYWRLVLPIFLHANLWHLIINILCILNLGLIIESKYKKSKFLLIY 132
Query: 215 FSSAIASSAMSYRFCN--SPAVGASGAIFGLVGS--FAVFI 251
F S + ++ CN AVGAS + FGL+G F +F+
Sbjct: 133 FLSGATGNILT-TICNPCQLAVGASTSGFGLIGCSIFEIFL 172
>gi|417784544|ref|ZP_12432250.1| peptidase, S54 family [Leptospira interrogans str. C10069]
gi|409952361|gb|EKO06874.1| peptidase, S54 family [Leptospira interrogans str. C10069]
Length = 514
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 358 LLEWGANRRIETL--AGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 415
Query: 213 VY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
+Y FS S A + N+ +VGASGAIFGL G+
Sbjct: 416 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGA 450
>gi|418689558|ref|ZP_13250679.1| peptidase, S54 family [Leptospira interrogans str. FPW2026]
gi|418729718|ref|ZP_13288265.1| peptidase, S54 family [Leptospira interrogans str. UI 12758]
gi|400361237|gb|EJP17204.1| peptidase, S54 family [Leptospira interrogans str. FPW2026]
gi|410775896|gb|EKR55887.1| peptidase, S54 family [Leptospira interrogans str. UI 12758]
Length = 514
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 358 LLEWGANRRIETL--AGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 415
Query: 213 VY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
+Y FS S A + N+ +VGASGAIFGL G+
Sbjct: 416 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGA 450
>gi|378550610|ref|ZP_09825826.1| hypothetical protein CCH26_11002 [Citricoccus sp. CH26A]
Length = 215
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 78/158 (49%), Gaps = 16/158 (10%)
Query: 137 LLAVNVLVYIAQFATQDKLL-----LWGAKINSLIDKGQFWRLATSAFLHA--NIAHLMV 189
++ + +VY+ QF T + W A + + + WR+ TSAFLH+ N H+++
Sbjct: 1 MIGICAVVYLLQFLTSGQRTGVTEQFWYAGMFTSAVAMEPWRMLTSAFLHSPGNPLHILL 60
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSF 247
N ++L +G +E + G R+L +Y SA S N P VGASGA++GL
Sbjct: 61 NLFTLWMMGRVLEPVLGWARFLALYLISAFGGSVAVLWLSAPNVPVVGASGAVYGLFA-- 118
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
A+FI+ R GG + L V N+ S ANI
Sbjct: 119 ALFIVLRRT--GGNVSSIVALIGV---NLAISFMGANI 151
>gi|442770468|gb|AGC71182.1| rhomboid family serine protease [uncultured bacterium A1Q1_fos_568]
Length = 247
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
GA L+ +G++WRL T FLHA I HL +N L + +E G R+ +Y S
Sbjct: 69 GALFGPLVAQGEWWRLLTGGFLHAGIMHLGMNMLMLWFLSQELEPALGRLRFAVLYVVSL 128
Query: 219 IASSAMSYRFCN-SPAVGASGAIFGLVGSFAVFIMRHRN 256
+ + SP VGASGA+FGL+G+ V +R R
Sbjct: 129 LGGALGVLLLSPVSPTVGASGAVFGLLGALVVLQLRARQ 167
>gi|312112526|ref|YP_003990842.1| rhomboid family protein [Geobacillus sp. Y4.1MC1]
gi|336236995|ref|YP_004589611.1| rhomboid family protein [Geobacillus thermoglucosidasius C56-YS93]
gi|311217627|gb|ADP76231.1| Rhomboid family protein [Geobacillus sp. Y4.1MC1]
gi|335363850|gb|AEH49530.1| Rhomboid family protein [Geobacillus thermoglucosidasius C56-YS93]
Length = 204
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 15/132 (11%)
Query: 157 LWGAKI--NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
LW I N+ I KG+ WR T LH H+++N SL GP +E + G ++L +Y
Sbjct: 42 LWEKMIGFNAAIKKGESWRFVTPLILHVRFEHMVINSISLILFGPALENMLGKGKFLILY 101
Query: 215 FSSAIASSAMSYRFCNSPAV----GASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK 270
S I ++ ++ PA+ GASG+IFGL G + R+I+ E QH
Sbjct: 102 IGSGIFANVATFFLL--PAMYSHAGASGSIFGLFGMYGYLATFRRDII-----EAQH--A 152
Query: 271 VIIFNMVCSAAF 282
++F ++C + F
Sbjct: 153 RLLFAVLCVSLF 164
>gi|268315851|ref|YP_003289570.1| rhomboid family protein [Rhodothermus marinus DSM 4252]
gi|262333385|gb|ACY47182.1| Rhomboid family protein [Rhodothermus marinus DSM 4252]
Length = 220
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 13/125 (10%)
Query: 137 LLAVNVLVYIAQFA-TQDKLL-----LWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
LL +N LV++AQ T D+LL LW + W+L T +FLH AHL N
Sbjct: 24 LLILNGLVFLAQLVPTTDRLLIEWFALWPLGLPDFYPGFWPWQLITYSFLHGGFAHLFFN 83
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS------PAVGASGAIFGLV 244
++L G +E+ G RR+ GVY+ + + ++ + P VGASG +FG++
Sbjct: 84 MFALWMFGVPIERAWGSRRF-GVYYFVCVVGAGLTQLLVVTLSGAVYPTVGASGGVFGIL 142
Query: 245 GSFAV 249
+F +
Sbjct: 143 LAFGM 147
>gi|421128003|ref|ZP_15588221.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
gi|421133348|ref|ZP_15593496.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|410022356|gb|EKO89133.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|410434470|gb|EKP83608.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
Length = 514
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 358 LLEWGANRRIETL--AGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 415
Query: 213 VY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
+Y FS S A + N+ +VGASGAIFGL G+
Sbjct: 416 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGA 450
>gi|417772121|ref|ZP_12420011.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Pomona]
gi|418680537|ref|ZP_13241786.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|418703562|ref|ZP_13264446.1| peptidase, S54 family [Leptospira interrogans serovar Hebdomadis
str. R499]
gi|418715819|ref|ZP_13275930.1| peptidase, S54 family [Leptospira interrogans str. UI 08452]
gi|421118289|ref|ZP_15578634.1| peptidase, S54 family [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|400327895|gb|EJO80135.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|409946078|gb|EKN96092.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Pomona]
gi|410010137|gb|EKO68283.1| peptidase, S54 family [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|410766698|gb|EKR37381.1| peptidase, S54 family [Leptospira interrogans serovar Hebdomadis
str. R499]
gi|410788320|gb|EKR82042.1| peptidase, S54 family [Leptospira interrogans str. UI 08452]
gi|455668108|gb|EMF33357.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Fox 32256]
Length = 514
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 358 LLEWGANRRIETL--AGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 415
Query: 213 VY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
+Y FS S A + N+ +VGASGAIFGL G+
Sbjct: 416 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGA 450
>gi|218688472|ref|YP_002396684.1| hypothetical protein ECED1_0646 [Escherichia coli ED1a]
gi|218426036|emb|CAR06853.1| conserved hypothetical protein; putative membrane protein
[Escherichia coli ED1a]
Length = 625
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 65/120 (54%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|110289433|gb|ABG66197.1| Rhomboid family protein, expressed [Oryza sativa Japonica Group]
gi|215686404|dbj|BAG87689.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 227
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 60/115 (52%), Gaps = 1/115 (0%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
+ ++ + Q WRL T +LHA + HL+ N SL IG +E+ G R +Y S I S
Sbjct: 7 DKVVHEHQGWRLVTCIWLHAGVVHLLANMLSLVLIGLRLEQQFGYMRIGIIYLVSGIGGS 66
Query: 223 AMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNM 276
+S F NS +VGASGA+FGL+G+ + + I L L VI N+
Sbjct: 67 VLSSLFIRNSISVGASGALFGLLGAMLSELFTNWTIYTNKAAALVTLLIVIAINL 121
>gi|345302141|ref|YP_004824043.1| Rhomboid family protein [Rhodothermus marinus SG0.5JP17-172]
gi|345111374|gb|AEN72206.1| Rhomboid family protein [Rhodothermus marinus SG0.5JP17-172]
Length = 220
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 13/125 (10%)
Query: 137 LLAVNVLVYIAQFA-TQDKLL-----LWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
LL +N LV++AQ T D+LL LW + W+L T +FLH AHL N
Sbjct: 24 LLILNGLVFLAQLVPTTDRLLIEWFALWPLGLPDFYPGFWPWQLITYSFLHGGFAHLFFN 83
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS------PAVGASGAIFGLV 244
++L G +E+ G RR+ GVY+ + + ++ + P VGASG +FG++
Sbjct: 84 MFALWMFGVPIERAWGSRRF-GVYYFVCVVGAGLTQLLVVTLSGAVYPTVGASGGVFGIL 142
Query: 245 GSFAV 249
+F +
Sbjct: 143 LAFGM 147
>gi|386618111|ref|YP_006137691.1| hypothetical protein ECNA114_0595 [Escherichia coli NA114]
gi|432420742|ref|ZP_19663298.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE178]
gi|432557648|ref|ZP_19794338.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE49]
gi|432709464|ref|ZP_19944531.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE6]
gi|432893393|ref|ZP_20105405.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE165]
gi|333968612|gb|AEG35417.1| Hypothetical protein ECNA114_0595 [Escherichia coli NA114]
gi|430947214|gb|ELC66921.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE178]
gi|431094083|gb|ELD99733.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE49]
gi|431251633|gb|ELF45640.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE6]
gi|431424373|gb|ELH06469.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE165]
Length = 625
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 65/120 (54%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|449452364|ref|XP_004143929.1| PREDICTED: inactive rhomboid protein 1-like [Cucumis sativus]
gi|449495860|ref|XP_004159966.1| PREDICTED: inactive rhomboid protein 1-like [Cucumis sativus]
Length = 327
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
Query: 161 KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIA 220
K N ++ + Q WRL + +LHA I HL+ N SL IG +E+ G R +Y + +
Sbjct: 106 KWNKVVHEHQGWRLLSCIWLHAGIIHLLANMLSLVLIGIRLEQQFGFVRIGMIYLVAGVG 165
Query: 221 SSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNM 276
S MS F N+ +VGASGA+FGL+G+ ++ + I L L +++ N+
Sbjct: 166 GSVMSSLFIQNNISVGASGALFGLLGAMLSELLTNWTIYTNKVAALFTLIVIVVINL 222
>gi|197302289|ref|ZP_03167348.1| hypothetical protein RUMLAC_01016 [Ruminococcus lactaris ATCC
29176]
gi|197298720|gb|EDY33261.1| peptidase, S54 family [Ruminococcus lactaris ATCC 29176]
Length = 211
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 70/134 (52%), Gaps = 11/134 (8%)
Query: 137 LLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKGQ-FWRLATSAFLHANIAHLMVN 190
L+ VN+ V++ D +L GA +I + Q ++R T FLH I HL+ N
Sbjct: 13 LIIVNIAVFMVLSLLGDTENGYFMLHHGAMYEPMILENQEYYRFFTCMFLHFGIQHLLNN 72
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-----NSPAVGASGAIFGLVG 245
L ++G +E + G +YL +YF S + S +S+ + S + GASGAIFGL+G
Sbjct: 73 MVMLGALGWQLEPVIGKVKYLLIYFISGLGGSGLSFAWNVMHEEQSVSAGASGAIFGLMG 132
Query: 246 SFAVFIMRHRNILG 259
+ ++ +R LG
Sbjct: 133 ALLYVVIANRGRLG 146
>gi|358462907|ref|ZP_09173011.1| Peptidase S54, rhomboid domain protein [Frankia sp. CN3]
gi|357071027|gb|EHI80658.1| Peptidase S54, rhomboid domain protein [Frankia sp. CN3]
Length = 400
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 72/136 (52%), Gaps = 18/136 (13%)
Query: 134 TNILLAVNVLVYIAQFA------------TQDKLLLWGAKINSLIDKGQFWRLATSAFLH 181
T IL+ + ++ Y+ Q T D L+ G KI +L D ++WRL T+AFLH
Sbjct: 188 TKILIGLCLVAYVLQGVPGLTGTSRINQFTIDYSLI-GVKI-ALDD--EYWRLVTAAFLH 243
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP--AVGASGA 239
++ H++ N Y+L +G +E + G RYL ++F+ AI + +SY + GAS A
Sbjct: 244 GSVLHILFNMYALFLLGTQLEAVLGRARYLALFFACAIGGNTLSYLMSGERTFSYGASTA 303
Query: 240 IFGLVGSFAVFIMRHR 255
IFG ++ + R R
Sbjct: 304 IFGFFAAYYLIARRLR 319
>gi|312872929|ref|ZP_07732989.1| peptidase, S54 family [Lactobacillus iners LEAF 2062A-h1]
gi|311091451|gb|EFQ49835.1| peptidase, S54 family [Lactobacillus iners LEAF 2062A-h1]
Length = 232
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 8/124 (6%)
Query: 131 RQWTNILLAVNVLVYIAQFATQ-----DKLLLWGAKIN-SLIDKGQFWRLATSAFLHANI 184
R +T ++A+ ++VY + +KLL +G N +++ K QFWRL T+ F+HA
Sbjct: 16 RIFTWSIIAILIIVYAIELFFDVNNDINKLLDFGCMNNIAVVTKLQFWRLFTAQFIHAGF 75
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFG 242
H++ N + G +E+ G RYL +Y S + + +S+ N + GAS A+FG
Sbjct: 76 FHIICNIVMIYFFGMYLEQFLGHIRYLTIYLLSGVGGNLLSFALGQDNVISCGASTAVFG 135
Query: 243 LVGS 246
L+GS
Sbjct: 136 LMGS 139
>gi|125532680|gb|EAY79245.1| hypothetical protein OsI_34361 [Oryza sativa Indica Group]
Length = 332
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 67/130 (51%), Gaps = 7/130 (5%)
Query: 150 ATQDKL--LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
AT K+ L+W + ++ + Q WRL T +LHA + HL+ N SL IG +E+ G
Sbjct: 101 ATLQKMGALVW----DKVVHEHQGWRLVTCIWLHAGVVHLLANMLSLVLIGLRLEQQFGY 156
Query: 208 RRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQ 266
R +Y S I S +S F NS +VGASGA+FGL+G+ + + I L
Sbjct: 157 MRIGIIYLVSGIGGSVLSSLFIRNSISVGASGALFGLLGAMLSELFTNWTIYTNKAAALV 216
Query: 267 HLAKVIIFNM 276
L VI N+
Sbjct: 217 TLLIVIAINL 226
>gi|432396557|ref|ZP_19639344.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE25]
gi|432722187|ref|ZP_19957112.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE17]
gi|432726730|ref|ZP_19961612.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE18]
gi|432740416|ref|ZP_19975138.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE23]
gi|432989728|ref|ZP_20178396.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE217]
gi|433109950|ref|ZP_20295826.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE150]
gi|430917694|gb|ELC38734.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE25]
gi|431268210|gb|ELF59691.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE17]
gi|431275439|gb|ELF66468.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE18]
gi|431286545|gb|ELF77371.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE23]
gi|431498180|gb|ELH77394.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE217]
gi|431631153|gb|ELI99472.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE150]
Length = 625
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 65/120 (54%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|419915295|ref|ZP_14433661.1| outer membrane protein [Escherichia coli KD1]
gi|388384087|gb|EIL45829.1| outer membrane protein [Escherichia coli KD1]
Length = 625
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 65/120 (54%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|331645813|ref|ZP_08346916.1| outer membrane protein [Escherichia coli M605]
gi|417661194|ref|ZP_12310775.1| putative membrane protein [Escherichia coli AA86]
gi|330910412|gb|EGH38922.1| putative membrane protein [Escherichia coli AA86]
gi|331044565|gb|EGI16692.1| outer membrane protein [Escherichia coli M605]
Length = 625
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 65/120 (54%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|432405489|ref|ZP_19648211.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE28]
gi|430932406|gb|ELC52829.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE28]
Length = 625
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 65/120 (54%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|325912121|ref|ZP_08174519.1| peptidase, S54 family [Lactobacillus iners UPII 143-D]
gi|325476071|gb|EGC79239.1| peptidase, S54 family [Lactobacillus iners UPII 143-D]
Length = 232
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 8/124 (6%)
Query: 131 RQWTNILLAVNVLVYIAQFATQ-----DKLLLWGAKIN-SLIDKGQFWRLATSAFLHANI 184
R +T ++A+ ++VY + +KLL +G N +++ K QFWRL T+ F+HA
Sbjct: 16 RIFTWSIIAILIIVYAIELFFDVNNDINKLLDFGCMNNIAVVTKLQFWRLFTAQFIHAGF 75
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFG 242
H++ N + G +E+ G RYL +Y S + + +S+ N + GAS A+FG
Sbjct: 76 FHIICNIVMIYFFGMYLEQFLGHIRYLTIYLLSGVGGNLLSFALGQDNVISCGASTAVFG 135
Query: 243 LVGS 246
L+GS
Sbjct: 136 LMGS 139
>gi|309805213|ref|ZP_07699265.1| peptidase, S54 family [Lactobacillus iners LactinV 09V1-c]
gi|308165447|gb|EFO67678.1| peptidase, S54 family [Lactobacillus iners LactinV 09V1-c]
Length = 232
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 8/124 (6%)
Query: 131 RQWTNILLAVNVLVYIAQFATQ-----DKLLLWGAKIN-SLIDKGQFWRLATSAFLHANI 184
R +T ++A+ ++VY + +KLL +G N +++ K QFWRL T+ F+HA
Sbjct: 16 RIFTWSIIAILIIVYAIELFFDVNNDINKLLDFGCMNNIAVVTKLQFWRLFTAQFIHAGF 75
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFG 242
H++ N + G +E+ G RYL +Y S + + +S+ N + GAS A+FG
Sbjct: 76 FHIICNIVMIYFFGMYLEQFLGHIRYLTIYLLSGVGGNLLSFALGQDNVISCGASTAVFG 135
Query: 243 LVGS 246
L+GS
Sbjct: 136 LMGS 139
>gi|432445108|ref|ZP_19687416.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE191]
gi|433022472|ref|ZP_20210488.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE106]
gi|433323351|ref|ZP_20400700.1| hypothetical protein B185_007728 [Escherichia coli J96]
gi|430975830|gb|ELC92714.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE191]
gi|431540155|gb|ELI15784.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE106]
gi|432348054|gb|ELL42506.1| hypothetical protein B185_007728 [Escherichia coli J96]
Length = 625
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 65/120 (54%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|403046456|ref|ZP_10901925.1| hypothetical protein SOJ_15340 [Staphylococcus sp. OJ82]
gi|402763152|gb|EJX17245.1| hypothetical protein SOJ_15340 [Staphylococcus sp. OJ82]
Length = 485
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 70/124 (56%), Gaps = 6/124 (4%)
Query: 134 TNILLAVNVLVYIAQFA-----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+AVN+++++A + K+L G ++ + G+++RL +S FLH + H++
Sbjct: 159 TYTLIAVNIIIWLAMVLFLNRFSDLKMLDVGGLVHFNVVHGEWYRLISSIFLHYDFEHIL 218
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSF 247
+N SL G +E I G R + +Y + + + S F ++ + GASGAIFGL+G+
Sbjct: 219 MNMLSLFIFGKIVESIVGHWRMIVIYIVAGLFGNFASLSFNIDTVSAGASGAIFGLIGAI 278
Query: 248 AVFI 251
F+
Sbjct: 279 FGFM 282
>gi|315282195|ref|ZP_07870654.1| rhomboid family protein, partial [Listeria marthii FSL S4-120]
gi|313614157|gb|EFR87842.1| rhomboid family protein [Listeria marthii FSL S4-120]
Length = 302
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH + HL N L +G E+I G RY+ +
Sbjct: 1 LIKWGGKFNPLIYAGEWWRFISPIFLHNGLMHLASNAVMLYIVGAWAERIYGKWRYILIL 60
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
I + S+ + +VGAS A+F ++G+ ++ N+
Sbjct: 61 LLGGICGNVASFALNMNLSVGASTAVFAVMGALLYLVVLKPNL 103
>gi|259500554|ref|ZP_05743456.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
gi|302191244|ref|ZP_07267498.1| membrane-associated serine protease [Lactobacillus iners AB-1]
gi|259167938|gb|EEW52433.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
Length = 232
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 8/124 (6%)
Query: 131 RQWTNILLAVNVLVYIAQFATQ-----DKLLLWGAKIN-SLIDKGQFWRLATSAFLHANI 184
R +T ++A+ ++VY + +KLL +G N +++ K QFWRL T+ F+HA
Sbjct: 16 RIFTWSIIAILIIVYAIELFFDVNNDINKLLDFGCMNNIAVVTKLQFWRLFTAQFIHAGF 75
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFG 242
H++ N + G +E+ G RYL +Y S + + +S+ N + GAS A+FG
Sbjct: 76 FHIICNIVMIYFFGMFLEQFLGHIRYLTIYLLSGVGGNLLSFALGQDNVISCGASTAVFG 135
Query: 243 LVGS 246
L+GS
Sbjct: 136 LMGS 139
>gi|432439995|ref|ZP_19682350.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE189]
gi|433012848|ref|ZP_20201226.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE104]
gi|430969227|gb|ELC86377.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE189]
gi|431535119|gb|ELI11502.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE104]
Length = 625
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 65/120 (54%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|315653611|ref|ZP_07906531.1| membrane-associated serine protease [Lactobacillus iners ATCC
55195]
gi|315488973|gb|EFU78615.1| membrane-associated serine protease [Lactobacillus iners ATCC
55195]
Length = 232
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 8/124 (6%)
Query: 131 RQWTNILLAVNVLVYIAQFATQ-----DKLLLWGAKIN-SLIDKGQFWRLATSAFLHANI 184
R +T ++A+ ++VY + +KLL +G N +++ K QFWRL T+ F+HA
Sbjct: 16 RIFTWSIIAILIIVYAIELFFDVNNDINKLLDFGCMNNIAVVTKLQFWRLFTAQFIHAGF 75
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFG 242
H++ N + G +E+ G RYL +Y S + + +S+ N + GAS A+FG
Sbjct: 76 FHIICNIVMIYFFGMYLEQFLGHIRYLTIYLLSGVGGNLLSFALGQDNVISCGASTAVFG 135
Query: 243 LVGS 246
L+GS
Sbjct: 136 LMGS 139
>gi|422022178|ref|ZP_16368686.1| hypothetical protein OO7_06384 [Providencia sneebia DSM 19967]
gi|414096671|gb|EKT58327.1| hypothetical protein OO7_06384 [Providencia sneebia DSM 19967]
Length = 287
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 23/143 (16%)
Query: 134 TNILLAVNVLVYIAQ--FAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T+ L+ +N+++Y Q FA+ ++ LLL+GA + L G +WR S LH+N H
Sbjct: 27 TSGLVLLNIVIYFYQLHFASPLDSRENNLLLFGANVYQLSLTGDWWRYPISMLLHSNGVH 86
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-----YRFCNSP--------- 232
L N +L IG E+ G + L +YF S I ++ S Y N P
Sbjct: 87 LAFNSLALFVIGIECERNYGKSKLLAIYFISGIGAALFSAYWQYYEDINDPTLTDNMVYI 146
Query: 233 --AVGASGAIFGLVGSFAVFIMR 253
VGASGAI GL + +++ +
Sbjct: 147 TVGVGASGAIMGLAAASVIYLYQ 169
>gi|312871798|ref|ZP_07731886.1| peptidase, S54 family [Lactobacillus iners LEAF 3008A-a]
gi|312875588|ref|ZP_07735589.1| peptidase, S54 family [Lactobacillus iners LEAF 2053A-b]
gi|311088842|gb|EFQ47285.1| peptidase, S54 family [Lactobacillus iners LEAF 2053A-b]
gi|311092740|gb|EFQ51096.1| peptidase, S54 family [Lactobacillus iners LEAF 3008A-a]
Length = 232
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 8/124 (6%)
Query: 131 RQWTNILLAVNVLVYIAQFATQ-----DKLLLWGAKIN-SLIDKGQFWRLATSAFLHANI 184
R +T ++A+ ++VY + +KLL +G N +++ K QFWRL T+ F+HA
Sbjct: 16 RIFTWSIIAILIIVYAIELFFDVNNDINKLLDFGCMNNIAVVTKLQFWRLFTAQFIHAGF 75
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFG 242
H++ N + G +E+ G RYL +Y S + + +S+ N + GAS A+FG
Sbjct: 76 FHIICNIVMIYFFGMFLEQFLGHIRYLTIYLLSGVGGNLLSFALGQDNVISCGASTAVFG 135
Query: 243 LVGS 246
L+GS
Sbjct: 136 LMGS 139
>gi|421131221|ref|ZP_15591405.1| peptidase, S54 family [Leptospira kirschneri str. 2008720114]
gi|410357472|gb|EKP04727.1| peptidase, S54 family [Leptospira kirschneri str. 2008720114]
Length = 447
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 291 LLEWGANRRIETL--AGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 348
Query: 213 VY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
+Y FS S A + N+ +VGASGAIFGL G+
Sbjct: 349 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGA 383
>gi|325912656|ref|ZP_08175039.1| peptidase, S54 family [Lactobacillus iners UPII 60-B]
gi|325478077|gb|EGC81206.1| peptidase, S54 family [Lactobacillus iners UPII 60-B]
Length = 232
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 8/124 (6%)
Query: 131 RQWTNILLAVNVLVYIAQFATQ-----DKLLLWGAKIN-SLIDKGQFWRLATSAFLHANI 184
R +T ++A+ ++VY + +KLL +G N +++ K QFWRL T+ F+HA
Sbjct: 16 RIFTWSIIAILIIVYAIELFFDVNNDINKLLDFGCMNNIAVVTKLQFWRLFTAQFIHAGF 75
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFG 242
H++ N + G +E+ G RYL +Y S + + +S+ N + GAS A+FG
Sbjct: 76 FHIICNIVMIYFFGMFLEQFLGHIRYLTIYLLSGVGGNLLSFALGQDNVISCGASTAVFG 135
Query: 243 LVGS 246
L+GS
Sbjct: 136 LMGS 139
>gi|333908196|ref|YP_004481782.1| rhomboid family protein [Marinomonas posidonica IVIA-Po-181]
gi|333478202|gb|AEF54863.1| Rhomboid family protein [Marinomonas posidonica IVIA-Po-181]
Length = 294
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
++ ++ KG++WRL T AFLH ++ H++ NC + +G +E + G +L +A+ S
Sbjct: 133 LSDVMAKGEYWRLLTPAFLHFSVIHIVFNCLWVWDVGRKLEMMVGKFVWLFSVLITAVLS 192
Query: 222 SAMSYRFCNSPAVGA-SGAIFGLVG 245
+ + Y F P G SG ++GL+G
Sbjct: 193 NVLQYYFSGYPIFGGLSGVVYGLIG 217
>gi|91209698|ref|YP_539684.1| hypothetical protein UTI89_C0653 [Escherichia coli UTI89]
gi|386598393|ref|YP_006099899.1| peptidase, S54 (rhomboid) family [Escherichia coli IHE3034]
gi|386605429|ref|YP_006111729.1| hypothetical protein UM146_14270 [Escherichia coli UM146]
gi|422359103|ref|ZP_16439752.1| peptidase, S54 family protein [Escherichia coli MS 110-3]
gi|422839140|ref|ZP_16887112.1| hypothetical protein ESPG_01798 [Escherichia coli H397]
gi|432356961|ref|ZP_19600208.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE4]
gi|432572610|ref|ZP_19809101.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE55]
gi|432586914|ref|ZP_19823286.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE58]
gi|432753412|ref|ZP_19987980.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE22]
gi|432777553|ref|ZP_20011804.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE59]
gi|432786342|ref|ZP_20020508.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE65]
gi|432819934|ref|ZP_20053648.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE118]
gi|432826148|ref|ZP_20059804.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE123]
gi|433167476|ref|ZP_20352144.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE180]
gi|91071272|gb|ABE06153.1| hypothetical protein UTI89_C0653 [Escherichia coli UTI89]
gi|294490526|gb|ADE89282.1| peptidase, S54 (rhomboid) family [Escherichia coli IHE3034]
gi|307627913|gb|ADN72217.1| hypothetical protein UM146_14270 [Escherichia coli UM146]
gi|315287096|gb|EFU46510.1| peptidase, S54 family protein [Escherichia coli MS 110-3]
gi|371611161|gb|EHN99687.1| hypothetical protein ESPG_01798 [Escherichia coli H397]
gi|430879771|gb|ELC03102.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE4]
gi|431110948|gb|ELE14865.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE55]
gi|431124194|gb|ELE26848.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE58]
gi|431305793|gb|ELF94114.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE22]
gi|431330153|gb|ELG17435.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE59]
gi|431341471|gb|ELG28478.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE65]
gi|431370936|gb|ELG56729.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE118]
gi|431374344|gb|ELG59936.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE123]
gi|431693476|gb|ELJ58889.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE180]
Length = 625
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L ++ S I +S Y S ++GASGAI G+ G+
Sbjct: 83 ALLVVGTVAERILGKWRLLIIWLFSGIFGGLISACYTLRESEQIVISIGASGAIMGIAGA 142
>gi|218557587|ref|YP_002390500.1| hypothetical protein ECS88_0691 [Escherichia coli S88]
gi|432361433|ref|ZP_19604618.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE5]
gi|218364356|emb|CAR02031.1| conserved hypothetical protein; putative membrane protein
[Escherichia coli S88]
gi|430889951|gb|ELC12598.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE5]
Length = 625
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L ++ S I +S Y S ++GASGAI G+ G+
Sbjct: 83 ALLVVGTVAERILGKWRLLIIWLFSGIFGGLISACYTLRESEQIVISIGASGAIMGIAGA 142
>gi|422421998|ref|ZP_16498951.1| rhomboid family protein, partial [Listeria seeligeri FSL S4-171]
gi|313638066|gb|EFS03339.1| rhomboid family protein [Listeria seeligeri FSL S4-171]
Length = 424
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 53/103 (51%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY +
Sbjct: 126 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLIHLASNAVMLYIVGAWAERIYGKWRYALIL 185
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
I + S+ + ++GAS A+F ++G+ ++ N+
Sbjct: 186 IIGGICGNIASFALNMNLSIGASTAVFAVMGALLYLVVLKPNV 228
>gi|422418937|ref|ZP_16495892.1| rhomboid family protein [Listeria seeligeri FSL N1-067]
gi|313633378|gb|EFS00218.1| rhomboid family protein [Listeria seeligeri FSL N1-067]
Length = 414
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 53/103 (51%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY +
Sbjct: 116 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLIHLASNAVMLYIVGAWAERIYGKWRYALIL 175
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI 257
I + S+ + ++GAS A+F ++G+ ++ N+
Sbjct: 176 IIGGICGNIASFALNMNLSIGASTAVFAVMGALLYLVVLKPNV 218
>gi|298706194|emb|CBJ29235.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 256
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 1/118 (0%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
TN LL +N LV++ Q + ++ D G+++RL T+ LH HL N +
Sbjct: 80 TNALLVINFLVFLQQQQDPSVTTSFYKLAYAITDHGEWYRLVTAVMLHGGWGHLAGNSMA 139
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLVGSFAVF 250
L +IG E G +++ +Y S ++ + +S +P++GASGAIFGL+G+ A+
Sbjct: 140 LFNIGRGTETYMGTEKFVALYVCSGVSGNVLSCIVDPLTPSLGASGAIFGLLGAEAMI 197
>gi|428277913|ref|YP_005559648.1| hypothetical protein BSNT_00791 [Bacillus subtilis subsp. natto
BEST195]
gi|291482870|dbj|BAI83945.1| hypothetical protein BSNT_00791 [Bacillus subtilis subsp. natto
BEST195]
Length = 199
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 66/124 (53%), Gaps = 8/124 (6%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ G++WRL T LHA HL+ N S+ P +E++ G +L VY S I + +
Sbjct: 53 VANGEWWRLITPILLHAGFTHLLFNSMSIFLFAPALERMLGKAHFLLVYAGSGIIGNIGT 112
Query: 226 YRFCNSPA----VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAA 281
Y P VGASGAIFGL G + +F++ RN L G+E + + ++ F ++ S
Sbjct: 113 Y--VTEPLDYVHVGASGAIFGLFGVY-LFMVLFRNEL-IGQEHSKMIITLLAFAVLMSFI 168
Query: 282 FANI 285
+NI
Sbjct: 169 NSNI 172
>gi|309810248|ref|ZP_07704093.1| peptidase, S54 family [Lactobacillus iners SPIN 2503V10-D]
gi|312874222|ref|ZP_07734256.1| peptidase, S54 family [Lactobacillus iners LEAF 2052A-d]
gi|308169520|gb|EFO71568.1| peptidase, S54 family [Lactobacillus iners SPIN 2503V10-D]
gi|311090292|gb|EFQ48702.1| peptidase, S54 family [Lactobacillus iners LEAF 2052A-d]
Length = 232
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 8/124 (6%)
Query: 131 RQWTNILLAVNVLVYIAQFATQ-----DKLLLWGAKIN-SLIDKGQFWRLATSAFLHANI 184
R +T ++A+ ++VY + +KLL +G N +++ K QFWRL T+ F+HA
Sbjct: 16 RIFTWSIIAILIIVYAIELFFDVNNDINKLLDFGCMNNIAVVTKLQFWRLFTAQFIHAGF 75
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFG 242
H++ N + G +E+ G RYL +Y S + + +S+ N + GAS A+FG
Sbjct: 76 FHVICNIVMIYFFGMYLEQFLGHIRYLTIYLLSGVGGNLLSFALGQDNVISCGASTAVFG 135
Query: 243 LVGS 246
L+GS
Sbjct: 136 LMGS 139
>gi|117622865|ref|YP_851778.1| hypothetical protein APECO1_1407 [Escherichia coli APEC O1]
gi|417083123|ref|ZP_11951259.1| hypothetical protein i01_00854 [Escherichia coli cloneA_i1]
gi|419945366|ref|ZP_14461811.1| hypothetical protein ECHM605_15043 [Escherichia coli HM605]
gi|432596557|ref|ZP_19832840.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE62]
gi|433004142|ref|ZP_20192580.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE227]
gi|433011351|ref|ZP_20199756.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE229]
gi|433152765|ref|ZP_20337733.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE176]
gi|433162463|ref|ZP_20347224.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE179]
gi|115511989|gb|ABJ00064.1| hypothetical protein APECO1_1407 [Escherichia coli APEC O1]
gi|355352991|gb|EHG02164.1| hypothetical protein i01_00854 [Escherichia coli cloneA_i1]
gi|388415804|gb|EIL75715.1| hypothetical protein ECHM605_15043 [Escherichia coli HM605]
gi|431133460|gb|ELE35450.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE62]
gi|431517463|gb|ELH94985.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE227]
gi|431519563|gb|ELH97015.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE229]
gi|431678345|gb|ELJ44349.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE176]
gi|431691820|gb|ELJ57271.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE179]
Length = 625
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L ++ S I +S Y S ++GASGAI G+ G+
Sbjct: 83 ALLVVGTVAERILGKWRLLIIWLFSGIFGGLISACYTLRESEQIVISIGASGAIMGIAGA 142
>gi|15240744|ref|NP_196342.1| RHOMBOID-like protein 3 [Arabidopsis thaliana]
gi|7546703|emb|CAB87281.1| membrane protein [Arabidopsis thaliana]
gi|16648762|gb|AAL25572.1| AT5g07250/T28J14_190 [Arabidopsis thaliana]
gi|20466143|gb|AAM19993.1| AT5g07250/T28J14_190 [Arabidopsis thaliana]
gi|332003744|gb|AED91127.1| RHOMBOID-like protein 3 [Arabidopsis thaliana]
Length = 346
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
+ +++K + WRL T +LHA + HL N SL IG +E+ G R +Y S I S
Sbjct: 126 SKVVEKKEGWRLLTCIWLHAGVIHLGANMLSLVFIGIRLEQQFGFVRIGVIYLLSGIGGS 185
Query: 223 AMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNM 276
+S F NS +VGASGA+FGL+GS + + I L L VI+ N+
Sbjct: 186 VLSSLFIRNSISVGASGALFGLLGSMLSELFTNWTIYSNKIAALLTLLFVILINL 240
>gi|392972219|ref|ZP_10337611.1| rhomboid family protein [Staphylococcus equorum subsp. equorum Mu2]
gi|392509932|emb|CCI60913.1| rhomboid family protein [Staphylococcus equorum subsp. equorum Mu2]
Length = 391
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 70/124 (56%), Gaps = 6/124 (4%)
Query: 134 TNILLAVNVLVYIAQFA-----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+AVN+++++A + K+L G ++ + G+++RL +S FLH + H++
Sbjct: 65 TYTLIAVNIIIWLAMVLFLNRFSDLKMLDVGGLVHFNVVHGEWYRLISSIFLHYDFEHIL 124
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSF 247
+N SL G +E I G R + +Y + + + S F ++ + GASGAIFGL+G+
Sbjct: 125 MNMLSLFIFGKIVESIVGHWRMIVIYIVAGLFGNFASLSFNIDTVSAGASGAIFGLIGAI 184
Query: 248 AVFI 251
F+
Sbjct: 185 FGFM 188
>gi|432464637|ref|ZP_19706745.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE205]
gi|432582735|ref|ZP_19819145.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE57]
gi|433071724|ref|ZP_20258420.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE129]
gi|433119225|ref|ZP_20304934.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE157]
gi|433182212|ref|ZP_20366509.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE85]
gi|430997388|gb|ELD13655.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE205]
gi|431119751|gb|ELE22750.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE57]
gi|431592815|gb|ELI63384.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE129]
gi|431648768|gb|ELJ16142.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE157]
gi|431711300|gb|ELJ75653.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE85]
Length = 625
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L ++ S I +S Y S ++GASGAI G+ G+
Sbjct: 83 ALLVVGTVAERILGKWRLLIIWLFSGIFGGLISACYTLRESEQIVISIGASGAIMGIAGA 142
>gi|456972143|gb|EMG12595.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. LT2186]
Length = 226
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 70 LLEWGANRRIETL--AGQWWRLVTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 127
Query: 213 VY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
+Y FS S A + N+ +VGASGAIFGL G+
Sbjct: 128 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGA 162
>gi|422369065|ref|ZP_16449468.1| peptidase, S54 family protein [Escherichia coli MS 16-3]
gi|432897487|ref|ZP_20108396.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE192]
gi|433027657|ref|ZP_20215532.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE109]
gi|315299195|gb|EFU58449.1| peptidase, S54 family protein [Escherichia coli MS 16-3]
gi|431429533|gb|ELH11461.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE192]
gi|431545727|gb|ELI20374.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE109]
Length = 625
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L ++ S I +S Y S ++GASGAI G+ G+
Sbjct: 83 ALLVVGTVAERILGKWRLLIIWLFSGIFGGLISACYTLRESEQIVISIGASGAIMGIAGA 142
>gi|405378611|ref|ZP_11032527.1| putative membrane protein [Rhizobium sp. CF142]
gi|397324861|gb|EJJ29210.1| putative membrane protein [Rhizobium sp. CF142]
Length = 575
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 68/138 (49%), Gaps = 16/138 (11%)
Query: 134 TNILLAVNVLVYIAQF------------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLH 181
T L+ + V VY+ + +T+ L+L G S+I ++WRL T+ LH
Sbjct: 202 TYALIGILVAVYVCELVFGVDMPKAGSPSTRTLLVLGGTFRPSIIADSEWWRLFTAPLLH 261
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP---AVGASG 238
+ HL VNC SL G E++ G R + ++F SA+ S +S + N P VGASG
Sbjct: 262 GSPLHLAVNCISLWFAGGIFERLVGWRWFAAIFFISALGGSIVSV-WINPPDIVGVGASG 320
Query: 239 AIFGLVGSFAVFIMRHRN 256
I GL + +R R+
Sbjct: 321 GIVGLFAAVIAVSIRFRS 338
>gi|379706281|ref|YP_005261486.1| putative membrane-bound rhomboid protease [Nocardia cyriacigeorgica
GUH-2]
gi|374843780|emb|CCF60842.1| putative membrane-bound rhomboid protease [Nocardia cyriacigeorgica
GUH-2]
Length = 247
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 69/134 (51%), Gaps = 12/134 (8%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSL----------IDKGQFWRLATSAFLHAN 183
T L+AVNV V+ A A Q + L+ +SL + G + R+ S FLH
Sbjct: 31 TYALIAVNVAVF-AVTAAQARSLVDNYNGSSLFLRWVMFPPAVADGDWVRVIGSGFLHYG 89
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFG 242
HL++N ++L +G +E + G RYL VY S + SA F +S GASGA++G
Sbjct: 90 PIHLLLNMFALYVVGRDIELVLGRSRYLAVYLVSLLGGSAAVMVFSQDSLTAGASGAVYG 149
Query: 243 LVGSFAVFIMRHRN 256
L G+ V ++R R
Sbjct: 150 LFGAITVILIRLRQ 163
>gi|338731999|ref|YP_004670472.1| hypothetical protein SNE_A01030 [Simkania negevensis Z]
gi|336481382|emb|CCB87981.1| hypothetical protein SNE_A01030 [Simkania negevensis Z]
Length = 336
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 154 KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGV 213
+L WG + + G++WRL TS F+H + HL+VN Y+L S+G +E + G +
Sbjct: 31 DILHWGGNSSYEVLSGEWWRLLTSLFIHIGLIHLLVNMYALFSMGRFLESVIGSYLFFVS 90
Query: 214 YFSSAIASSAMSYRFCNSPAV---GASGAIFGLVG 245
Y S + S S+ F + GASGAI G+ G
Sbjct: 91 YLVSGLISGIASFLFHQETMIVSAGASGAIAGIFG 125
>gi|386774818|ref|ZP_10097196.1| membrane protein [Brachybacterium paraconglomeratum LC44]
Length = 313
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 75/161 (46%), Gaps = 19/161 (11%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWG--AKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
T L+A+ VL Y+ Q + G A +L W T+ FLH I HL +N
Sbjct: 95 TYTLIALCVLAYLGQMVAPQIVEQLGIFAPFRAL---AMPWTFLTAGFLHGGIMHLALNM 151
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-------SPAVGASGAIFGLV 244
Y+L ++G +E+ GP R+ +YF S + Y + + VGASG +FGL
Sbjct: 152 YALWAMGQFLERSLGPARFAAIYFVSMLGGHTAVYVLADPMGYSWLTGTVGASGGVFGLF 211
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
A FI+ R +GG ++ + +I N+V + NI
Sbjct: 212 A--AAFIVNRR--MGG---QVAQIGVLIALNLVITFTVPNI 245
>gi|374604833|ref|ZP_09677783.1| hypothetical protein PDENDC454_17738 [Paenibacillus dendritiformis
C454]
gi|374389541|gb|EHQ60913.1| hypothetical protein PDENDC454_17738 [Paenibacillus dendritiformis
C454]
Length = 199
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 66/121 (54%), Gaps = 7/121 (5%)
Query: 134 TNILLAVNVLVYIA---QFATQDKLLLW--GAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +L+ NV ++I +QD + L+ GA + + WRLAT+ FLH+ HL+
Sbjct: 19 TTLLIIANVAMFIVLALNGGSQDNMTLFRFGAVLKMEPYASETWRLATAMFLHSGFQHLL 78
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIA--SSAMSYRFCNSPAVGASGAIFGLVGS 246
N ++L P ME+I G +Y +Y S + +A+ + AVGASGAI+G+ G+
Sbjct: 79 FNMFALFVFAPPMERILGSFKYAVLYLLSGLLGNGAALYLSEWGTLAVGASGAIYGVYGA 138
Query: 247 F 247
+
Sbjct: 139 Y 139
>gi|387828647|ref|YP_003348584.1| hypothetical protein ECSF_0594 [Escherichia coli SE15]
gi|432498877|ref|ZP_19740655.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE216]
gi|432693418|ref|ZP_19928630.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE162]
gi|432917810|ref|ZP_20122293.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE173]
gi|432925116|ref|ZP_20127207.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE175]
gi|432980136|ref|ZP_20168915.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE211]
gi|433095559|ref|ZP_20281772.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE139]
gi|433104768|ref|ZP_20290789.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE148]
gi|281177804|dbj|BAI54134.1| conserved hypothetical protein [Escherichia coli SE15]
gi|431032026|gb|ELD44750.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE216]
gi|431236655|gb|ELF31860.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE162]
gi|431446684|gb|ELH27428.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE173]
gi|431448588|gb|ELH29303.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE175]
gi|431494131|gb|ELH73721.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE211]
gi|431619615|gb|ELI88535.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE139]
gi|431634300|gb|ELJ02551.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE148]
Length = 625
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L ++ S + +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGAVAERILGKWRLLIIWLFSGVFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|389852799|ref|YP_006355033.1| Peptidase, putative, Rhomboid-like protein [Pyrococcus sp. ST04]
gi|388250105|gb|AFK22958.1| putative Peptidase, putative, Rhomboid-like protein [Pyrococcus sp.
ST04]
Length = 196
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 58/98 (59%), Gaps = 5/98 (5%)
Query: 153 DKLLLWGAKINSLID-KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
DK +L A+IN L+ G++WRL T+ F+H H +N + L +G +E I G +R+L
Sbjct: 31 DKAILQLAQINGLVLLNGEWWRLITAIFVHMGFVHFALNSFWLFYLGIDLEGIIGMKRFL 90
Query: 212 GVYFSSAIASSAMSYRFCNSPAV---GASGAIFGLVGS 246
V+F SA+ + +S F V GASG +FG+VG+
Sbjct: 91 IVFFLSALVGNILS-LFTLPLYVASGGASGGLFGIVGA 127
>gi|22122915|gb|AAM92298.1| putative membrane protein [Oryza sativa Japonica Group]
Length = 329
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 60/115 (52%), Gaps = 1/115 (0%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
+ ++ + Q WRL T +LHA + HL+ N SL IG +E+ G R +Y S I S
Sbjct: 109 DKVVHEHQGWRLVTCIWLHAGVVHLLANMLSLVLIGLRLEQQFGYMRIGIIYLVSGIGGS 168
Query: 223 AMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNM 276
+S F NS +VGASGA+FGL+G+ + + I L L VI N+
Sbjct: 169 VLSSLFIRNSISVGASGALFGLLGAMLSELFTNWTIYTNKAAALVTLLIVIAINL 223
>gi|418459787|ref|ZP_13030898.1| membrane protein [Saccharomonospora azurea SZMC 14600]
gi|359740100|gb|EHK88949.1| membrane protein [Saccharomonospora azurea SZMC 14600]
Length = 267
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 83/164 (50%), Gaps = 24/164 (14%)
Query: 136 ILLAVNVLVY-IAQFATQDKL-----------LLWGAKINSLIDKGQFWRLATSAFLHAN 183
+L+A+NV+VY + F D + +LW + L ++WRL TS FLH
Sbjct: 47 LLIAINVVVYALTAFQASDAMNNHNSPVFADGVLWPEAVVVL---DEWWRLLTSGFLHYG 103
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS--AIASSAMSYRFCNSPAVGASGAIF 241
+ HL +N +L +G +E + G R++ +YF S A ++ ++ ++ GASGAI+
Sbjct: 104 LIHLAMNMLALWVLGRDLEMLLGRVRFVALYFLSMFAGGAAVFAFGAADTGTAGASGAIY 163
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
GL+G+ V ++R R +I+ N++ S + NI
Sbjct: 164 GLMGAILVAVLRLR-------LNPTTAIGIIVLNVILSVSIPNI 200
>gi|95928805|ref|ZP_01311551.1| Rhomboid-like protein [Desulfuromonas acetoxidans DSM 684]
gi|95135150|gb|EAT16803.1| Rhomboid-like protein [Desulfuromonas acetoxidans DSM 684]
Length = 266
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
+I G++WR T A+ HA + H+ N L +GP +E+ GP ++ +Y +A+A++ +
Sbjct: 92 VIQNGEWWRCITYAYTHAGLIHIGFNMMVLYQVGPMLEREIGPSGFISLYTITALAATGL 151
Query: 225 SYRF-CNSPAVGASGAIFGLVG 245
Y + + +GASGA+FG++G
Sbjct: 152 GYFWHPMTVVIGASGALFGMIG 173
>gi|297570706|ref|YP_003696480.1| rhomboid family protein [Arcanobacterium haemolyticum DSM 20595]
gi|296931053|gb|ADH91861.1| Rhomboid family protein [Arcanobacterium haemolyticum DSM 20595]
Length = 210
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 8/123 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
T ++ A+ ++ +A +A + +L+ L + + WR T AFLH+ H++ N +
Sbjct: 28 TAVMSALCIIATLASYAVPE--VLFSYAFIPLFAEAEPWRFLTGAFLHSGFMHILFNVMA 85
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC------NSPAVGASGAIFGLVGSF 247
L +G +E R+ +Y SAI +A Y + N+ AVGASGAIFGL G+
Sbjct: 86 LIFLGAELEPALKSGRFAALYLGSAIGGNAAVYAWSAWTGEWNTAAVGASGAIFGLFGAL 145
Query: 248 AVF 250
V
Sbjct: 146 IVL 148
>gi|268637931|ref|XP_002649151.1| rhomboid family protein [Dictyostelium discoideum AX4]
gi|256012943|gb|EEU04099.1| rhomboid family protein [Dictyostelium discoideum AX4]
Length = 489
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
LL GAK + LI G++WR T FLH I H ++N + +G +E+ G R + +Y
Sbjct: 277 LLDVGAKYSPLILNGEWWRFFTPIFLHVGIFHYLMNMVTQLRVGMQLERAYGGHRIVPIY 336
Query: 215 FSSAIASSAMS-YRFCNSPAVGASGAIFGLVGSFAVFIMRHRNIL 258
+A + S NS VGASGAIFG +G ++R+ ++L
Sbjct: 337 LLCGVAGNLCSAIMLPNSVQVGASGAIFGFLGVLLTDLIRNWSVL 381
>gi|223984557|ref|ZP_03634688.1| hypothetical protein HOLDEFILI_01983 [Holdemania filiformis DSM
12042]
gi|223963485|gb|EEF67866.1| hypothetical protein HOLDEFILI_01983 [Holdemania filiformis DSM
12042]
Length = 424
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC 229
++WR TSAF+H ++ HL++N +L ++G EK+ G R YL + F S + SA +
Sbjct: 216 EYWRWLTSAFVHVDLWHLLMNMMALYNMGMLCEKLMGVRNYLIILFGSILFGSAFVFLGS 275
Query: 230 -NSPAVGASGAIFGLVGSFAVFIMRHR 255
N A+G SG ++GL+ +F V+ ++ R
Sbjct: 276 GNVVAMGISGGLYGLLAAFLVYGIQTR 302
>gi|357155676|ref|XP_003577199.1| PREDICTED: inactive rhomboid protein 1-like [Brachypodium
distachyon]
Length = 383
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 65/124 (52%), Gaps = 2/124 (1%)
Query: 155 LLLWGA-KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGV 213
LL GA ++ ++ Q WRL T +LHA + HL++N L IG +E+ G R V
Sbjct: 106 LLKMGALDVSKIVQGRQGWRLITCIWLHAGVVHLLINVLCLLFIGIRLEQEFGFVRIGLV 165
Query: 214 YFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
Y S S MS F S +VGASGA+FGL+GS ++ + ++ L L VI
Sbjct: 166 YLISGFGGSLMSALFIRSSISVGASGALFGLIGSMLSELITNWSLYANKVAALLTLVFVI 225
Query: 273 IFNM 276
+ N+
Sbjct: 226 VVNL 229
>gi|415836498|ref|ZP_11518883.1| rhomboid family protein [Escherichia coli RN587/1]
gi|416337832|ref|ZP_11674146.1| Putative membrane protein [Escherichia coli WV_060327]
gi|417284154|ref|ZP_12071449.1| peptidase, S54 family [Escherichia coli 3003]
gi|425276501|ref|ZP_18667843.1| hypothetical protein ECARS42123_0673 [Escherichia coli ARS4.2123]
gi|320194168|gb|EFW68800.1| Putative membrane protein [Escherichia coli WV_060327]
gi|323191289|gb|EFZ76553.1| rhomboid family protein [Escherichia coli RN587/1]
gi|386242363|gb|EII84098.1| peptidase, S54 family [Escherichia coli 3003]
gi|408206956|gb|EKI31721.1| hypothetical protein ECARS42123_0673 [Escherichia coli ARS4.2123]
Length = 625
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 65/120 (54%), Gaps = 11/120 (9%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSIFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLVVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
>gi|422885139|ref|ZP_16931587.1| rhomboid family protein [Streptococcus sanguinis SK49]
gi|332358110|gb|EGJ35942.1| rhomboid family protein [Streptococcus sanguinis SK49]
Length = 227
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 12/154 (7%)
Query: 134 TNILLAVNVLVYIAQF-------ATQDKLLLWGAKINS--LIDKGQFWRLATSAFLHANI 184
T+ILL + LV++ F A + + +GA + +I+ Q WRL ++ F+H +
Sbjct: 12 TSILLILTTLVFVVMFVLRGFSYAEEQTIFEFGAVFSPAIIINPVQIWRLFSAIFVHIGL 71
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGL 243
H +VN +L IG E I G R + +Y S + + + F +S + GAS A+FGL
Sbjct: 72 EHFVVNVVTLYFIGRQAEDIFGSRNFFLLYVMSGLMGNVFVFFFSPDSLSAGASTALFGL 131
Query: 244 VGSFAV--FIMRHRNILGGGKEELQHLAKVIIFN 275
S +++R I G+ + + IIF+
Sbjct: 132 FASIVTLQYVVRDSYIQQLGQSYMTLIVVNIIFS 165
>gi|260583535|ref|ZP_05851283.1| rhomboid protease GluP [Granulicatella elegans ATCC 700633]
gi|260158161|gb|EEW93229.1| rhomboid protease GluP [Granulicatella elegans ATCC 700633]
Length = 235
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 77/154 (50%), Gaps = 8/154 (5%)
Query: 133 WTNILLAVNVLVYIAQFATQDK-----LLLWGAKINS-LIDKGQFWRLATSAFLHANIAH 186
++N+ L + ++++I L+ +GA+ N+ +I ++WR T FLH + H
Sbjct: 19 FSNLFLLIQIIMFIIMTLKGGSTNPGILVYYGARANAFIIIFHEYWRFITPIFLHIGLEH 78
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVG 245
+N L G +E I G R+L +Y S I + S+ F + GAS ++FGL G
Sbjct: 79 FAMNSLFLYFFGNQLESIVGHGRFLVIYLLSGIMGNLASFAFNAQHISAGASTSLFGLFG 138
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCS 279
RHR I + +Q++A +++ N++ S
Sbjct: 139 LMLYLSTRHRYIYAFKELGMQYMA-LLVMNLITS 171
>gi|359490352|ref|XP_003634078.1| PREDICTED: inactive rhomboid protein 1 [Vitis vinifera]
Length = 324
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
++ K Q WRL T +LHA I HL+VN SL IG +E+ G R +Y S S +
Sbjct: 104 VVSKHQGWRLVTCIWLHAGIIHLLVNMLSLVLIGIRLEQQFGFVRIGVIYLLSGFGGSVL 163
Query: 225 SYRFC-NSPAVGASGAIFGLVGS 246
S F NS +VGASGA+FGL+G+
Sbjct: 164 SSLFIQNSISVGASGALFGLLGA 186
>gi|297810841|ref|XP_002873304.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
gi|297319141|gb|EFH49563.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
Length = 346
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
+ +++K + WRL T +LHA + HL N SL IG +E+ G R +Y S I S
Sbjct: 126 SKVVEKKEGWRLLTCIWLHAGVIHLGANMLSLIFIGIRLEQQFGFVRIGVIYLLSGIGGS 185
Query: 223 AMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNM 276
+S F NS +VGASGA+FGL+GS + + I L L VI+ N+
Sbjct: 186 VLSSLFIRNSISVGASGALFGLLGSMLSELFTNWTIYSNKIAALLTLLFVILINL 240
>gi|381163863|ref|ZP_09873093.1| putative membrane protein [Saccharomonospora azurea NA-128]
gi|379255768|gb|EHY89694.1| putative membrane protein [Saccharomonospora azurea NA-128]
Length = 317
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 83/164 (50%), Gaps = 24/164 (14%)
Query: 136 ILLAVNVLVY-IAQFATQDKL-----------LLWGAKINSLIDKGQFWRLATSAFLHAN 183
+L+A+NV+VY + F D + +LW + L ++WRL TS FLH
Sbjct: 97 LLIAINVVVYALTAFQASDAMNNHNSPVFADGVLWPEAVVVL---DEWWRLLTSGFLHYG 153
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS--AIASSAMSYRFCNSPAVGASGAIF 241
+ HL +N +L +G +E + G R++ +YF S A ++ ++ ++ GASGAI+
Sbjct: 154 LIHLAMNMLALWVLGRDLEMLLGRVRFVALYFLSMFAGGAAVFAFGAADTGTAGASGAIY 213
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANI 285
GL+G+ V ++R R +I+ N++ S + NI
Sbjct: 214 GLMGAILVAVLRLR-------LNPTTAIGIIVLNVILSVSIPNI 250
>gi|218248147|ref|YP_002373518.1| rhomboid family protein [Cyanothece sp. PCC 8801]
gi|218168625|gb|ACK67362.1| Rhomboid family protein [Cyanothece sp. PCC 8801]
Length = 198
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
GA + ++ +G+ WRL T+ FLH + HL VN L +G +E G RYL +YF S
Sbjct: 39 GALVPQVVVQGEVWRLLTANFLHYSWLHLFVNMIGLYFLGRLVELKFGVFRYLIIYFVSG 98
Query: 219 IASSAMSYRFC------NSPAVGASGAIFGLVGS 246
+ + A F + +GASGAI GLVGS
Sbjct: 99 LGAMAAFTYFAITTNDTDYILLGASGAIMGLVGS 132
>gi|257060526|ref|YP_003138414.1| rhomboid family protein [Cyanothece sp. PCC 8802]
gi|256590692|gb|ACV01579.1| Rhomboid family protein [Cyanothece sp. PCC 8802]
Length = 198
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
GA + ++ +G+ WRL T+ FLH + HL VN L +G +E G RYL +YF S
Sbjct: 39 GALVPQVVVQGEVWRLLTANFLHYSWLHLFVNMIGLYFLGRLVELKFGVFRYLIIYFVSG 98
Query: 219 IASSAMSYRFC------NSPAVGASGAIFGLVGS 246
+ + A F + +GASGAI GLVGS
Sbjct: 99 LGAMAAFTYFAITTNDTDYILLGASGAIMGLVGS 132
>gi|118474503|ref|YP_892056.1| rhomboid family protein [Campylobacter fetus subsp. fetus 82-40]
gi|424820726|ref|ZP_18245764.1| rhomboid family protein [Campylobacter fetus subsp. venerealis NCTC
10354]
gi|118413729|gb|ABK82149.1| rhomboid family protein [Campylobacter fetus subsp. fetus 82-40]
gi|342327505|gb|EGU23989.1| rhomboid family protein [Campylobacter fetus subsp. venerealis NCTC
10354]
Length = 172
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 66/121 (54%), Gaps = 8/121 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDKL---LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+A+N +VY ++ + + +G +N L +G +W+L T+ FLH ++ H+++N
Sbjct: 4 TPFLIAINAVVYFLEYFVYNSRSFSIFFG--LNELFFEGAYWQLITTMFLHGSLMHILMN 61
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS---YRFCNSPAVGASGAIFGLVGSF 247
L G +E+ G ++L +Y + +SA+S F N VGASGAI L+G
Sbjct: 62 MAVLYQFGMLLERYLGSVKFLLLYIVGGVITSALSLSYLMFANVNLVGASGAISVLLGFM 121
Query: 248 A 248
A
Sbjct: 122 A 122
>gi|110289434|gb|ABB47903.2| Rhomboid family protein, expressed [Oryza sativa Japonica Group]
Length = 250
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 54/93 (58%), Gaps = 5/93 (5%)
Query: 156 LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
L+W + ++ + Q WRL T +LHA + HL+ N SL IG +E+ G R +Y
Sbjct: 4 LVW----DKVVHEHQGWRLVTCIWLHAGVVHLLANMLSLVLIGLRLEQQFGYMRIGIIYL 59
Query: 216 SSAIASSAMSYRFC-NSPAVGASGAIFGLVGSF 247
S I S +S F NS +VGASGA+FGL+G+
Sbjct: 60 VSGIGGSVLSSLFIRNSISVGASGALFGLLGAM 92
>gi|338536708|ref|YP_004670042.1| S54 family peptidase [Myxococcus fulvus HW-1]
gi|337262804|gb|AEI68964.1| S54 family peptidase [Myxococcus fulvus HW-1]
Length = 498
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 66/126 (52%), Gaps = 1/126 (0%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCY 192
+L+ ++ A D LL WGAK L+ D GQ WRL T+ LH + HL +N
Sbjct: 4 ATVLVGIHGAARAAGPVGLDTLLRWGAKAGPLVMDAGQVWRLVTANLLHRDFLHLALNVL 63
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIM 252
L + G +E++C R Y + ++ +A+ A S + +VGASG ++G VG+ V
Sbjct: 64 VLLAAGTGLERLCRRRDYAALLVAAGLATMAGSLGSSGAVSVGASGIVYGCVGALLVLGR 123
Query: 253 RHRNIL 258
RHR L
Sbjct: 124 RHRAKL 129
>gi|282163047|ref|YP_003355432.1| peptidase S54, rhomboid family protein [Methanocella paludicola
SANAE]
gi|282155361|dbj|BAI60449.1| peptidase S54, rhomboid family protein [Methanocella paludicola
SANAE]
Length = 261
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 172 WRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA-IASSAMSYRFCN 230
W + TS FLH+++ HL N +L GP +E+ G R+LG+YF + IA A F
Sbjct: 112 WGILTSIFLHSSLMHLFFNMLALFFFGPLLERRIGSGRFLGLYFGTGIIAGLAQILAFPG 171
Query: 231 SPAVGASGAIFGLVGSFAV 249
S +GASGAIFG++G+ V
Sbjct: 172 SAVLGASGAIFGVLGTLTV 190
>gi|418670564|ref|ZP_13231935.1| peptidase, S54 family [Leptospira interrogans serovar Pyrogenes
str. 2006006960]
gi|421121687|ref|ZP_15581980.1| peptidase, S54 family [Leptospira interrogans str. Brem 329]
gi|410345538|gb|EKO96634.1| peptidase, S54 family [Leptospira interrogans str. Brem 329]
gi|410753946|gb|EKR15604.1| peptidase, S54 family [Leptospira interrogans serovar Pyrogenes
str. 2006006960]
Length = 226
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 55/96 (57%), Gaps = 5/96 (5%)
Query: 154 KLLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 69 SLLEWGANRRIETL--AGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFL 126
Query: 212 GVY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
+Y FS S A + N+ +VGASGAIFGL G+
Sbjct: 127 ILYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGA 162
>gi|390601280|gb|EIN10674.1| rhomboid-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 314
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 21/131 (16%)
Query: 137 LLAVNVLVYI------AQFAT--QDKLLLWGAKINSL------IDKGQFWRLATSAFLHA 182
++A N +V++ AQF T ++W +N++ I+ G+ W TS F H+
Sbjct: 122 IIAANGVVFVGWQYAKAQFETGRNTGPMIW--MLNNVTSSWNNINSGRIWTPLTSCFSHS 179
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-----NSPAVGAS 237
++AH+ VN +S + PT+ + G R++G+YF I SSA+S + + P+ GAS
Sbjct: 180 DLAHIFVNGFSFFFMAPTVLSLLGNARFIGLYFGGGIISSAVSLAWSAKAGRDRPSQGAS 239
Query: 238 GAIFGLVGSFA 248
GAI+ +V FA
Sbjct: 240 GAIYSIVSYFA 250
>gi|225455416|ref|XP_002279077.1| PREDICTED: inactive rhomboid protein 1 isoform 1 [Vitis vinifera]
gi|297741091|emb|CBI31822.3| unnamed protein product [Vitis vinifera]
Length = 325
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
++ K Q WRL T +LHA I HL+VN SL IG +E+ G R +Y S S +
Sbjct: 105 VVSKHQGWRLVTCIWLHAGIIHLLVNMLSLVLIGIRLEQQFGFVRIGVIYLLSGFGGSVL 164
Query: 225 SYRFC-NSPAVGASGAIFGLVGS 246
S F NS +VGASGA+FGL+G+
Sbjct: 165 SSLFIQNSISVGASGALFGLLGA 187
>gi|456824612|gb|EMF73038.1| peptidase, S54 family [Leptospira interrogans serovar Canicola str.
LT1962]
Length = 226
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 70 LLEWGANRRIETL--AGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 127
Query: 213 VY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
+Y FS S A + N+ +VGASGAIFGL G+
Sbjct: 128 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGA 162
>gi|356518507|ref|XP_003527920.1| PREDICTED: inactive rhomboid protein 1-like [Glycine max]
Length = 373
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 151 TQDKLLLWGAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRR 209
+Q KL GA SL+ + Q WRL T FLHA + HL++N S+ +G ++E GP R
Sbjct: 89 SQSKLDEMGALRRSLLTEHHQTWRLFTFPFLHAGVFHLLLNLSSVIYVGVSLEHHFGPIR 148
Query: 210 YLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSF 247
+Y SA S ++ F N PAVGASGA++GL+G+
Sbjct: 149 IGIIYALSAFVGSLVASLFLQNMPAVGASGALYGLLGTL 187
>gi|384174133|ref|YP_005555518.1| sporulation membrane protein and putative endopeptidase YdcA
[Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|349593357|gb|AEP89544.1| sporulation membrane protein and putative endopeptidase YdcA
[Bacillus subtilis subsp. subtilis str. RO-NN-1]
Length = 199
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 66/124 (53%), Gaps = 8/124 (6%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ G++WRL T LHA HL+ N S+ P +E++ G +L VY S I + +
Sbjct: 53 VANGEWWRLITPILLHAGFTHLLFNSMSIFLFAPALERMLGKASFLLVYAGSGIIGNIGT 112
Query: 226 YRFCNSPA----VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAA 281
Y P VGASGAIFGL G + +F++ RN L G+E + + ++ F ++ S
Sbjct: 113 Y--VTEPLDYVHVGASGAIFGLFGVY-LFMVLFRNEL-IGQEHSKLIITLLAFAVLMSFI 168
Query: 282 FANI 285
+NI
Sbjct: 169 NSNI 172
>gi|115372709|ref|ZP_01460015.1| peptidase, S54 (rhomboid) family, putative [Stigmatella aurantiaca
DW4/3-1]
gi|115370190|gb|EAU69119.1| peptidase, S54 (rhomboid) family, putative [Stigmatella aurantiaca
DW4/3-1]
Length = 520
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
Query: 153 DKLLLWGAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
D ++ +GAK+ L+ + G+ WRL T+ FLH + AH+ +N L ++G +E Y
Sbjct: 40 DAMVRFGAKVGPLMTEAGEPWRLVTANFLHRDGAHVGLNMLVLLAVGWVLEGTWRRWDYA 99
Query: 212 GVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNIL 258
V +S +++ S + +VGASG +G VG V RHR +L
Sbjct: 100 AVLVASGLSTMTASLLWAEEVSVGASGMAYGCVGGLIVLGRRHRAVL 146
>gi|291452621|ref|ZP_06592011.1| conserved hypothetical protein [Streptomyces albus J1074]
gi|291355570|gb|EFE82472.1| conserved hypothetical protein [Streptomyces albus J1074]
Length = 299
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 70/140 (50%), Gaps = 15/140 (10%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDK----LLLWGA--------KINSLIDKGQFWRLATSA 178
R T ILL +N V++A D+ L+L GA + + G+++RL TS
Sbjct: 84 RLLTKILLGINAAVFLAVLVLGDEFVAHLMLVGAFPPPEFGWEPVMGVAAGEWYRLITSV 143
Query: 179 FLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGA 236
F H H N L +G +E G RYL +Y S +A A++Y P++GA
Sbjct: 144 FAHQEFLHFASNMLLLWWLGGPLEAALGRVRYLALYLISGLAGGALTYVIAAPQQPSLGA 203
Query: 237 SGAIFGLVGSFAVFIMRHRN 256
SGA+FGL+G+ V +MR N
Sbjct: 204 SGAVFGLMGA-TVVLMRRLN 222
>gi|421742088|ref|ZP_16180236.1| putative membrane protein [Streptomyces sp. SM8]
gi|406689504|gb|EKC93377.1| putative membrane protein [Streptomyces sp. SM8]
Length = 299
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 70/140 (50%), Gaps = 15/140 (10%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDK----LLLWGA--------KINSLIDKGQFWRLATSA 178
R T ILL +N V++A D+ L+L GA + + G+++RL TS
Sbjct: 84 RLLTKILLGINAAVFLAVLVLGDEFVAHLMLVGAFPPPEFGWEPVMGVAAGEWYRLITSV 143
Query: 179 FLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGA 236
F H H N L +G +E G RYL +Y S +A A++Y P++GA
Sbjct: 144 FAHQEFLHFASNMLLLWWLGGPLEAALGRVRYLALYLISGLAGGALTYVIAAPQQPSLGA 203
Query: 237 SGAIFGLVGSFAVFIMRHRN 256
SGA+FGL+G+ V +MR N
Sbjct: 204 SGAVFGLMGA-TVVLMRRLN 222
>gi|312970732|ref|ZP_07784913.1| rhomboid family protein [Escherichia coli 1827-70]
gi|310337381|gb|EFQ02519.1| rhomboid family protein [Escherichia coli 1827-70]
Length = 231
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 58/101 (57%), Gaps = 6/101 (5%)
Query: 152 QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
Q L+ GA + SL G+ WRL +S FLH++++HL++N ++ +G E+I G R L
Sbjct: 8 QSALIHLGANVASLTLSGEPWRLLSSVFLHSSVSHLLMNMFAFLVVGAVAERILGKWRLL 67
Query: 212 GVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
++ S + +S Y +S +VGASGAI G+ G+
Sbjct: 68 IIWLFSGVFGGLISACYALRDSEQIVISVGASGAIMGIAGA 108
>gi|159040476|ref|YP_001539729.1| rhomboid family protein [Salinispora arenicola CNS-205]
gi|157919311|gb|ABW00739.1| Rhomboid family protein [Salinispora arenicola CNS-205]
Length = 303
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 65/114 (57%), Gaps = 9/114 (7%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
I +G+++RL T+ FLH + HL++N Y+L +G +E GP R+L +Y S + + +
Sbjct: 134 IAEGEWYRLITAMFLHYGVIHLLLNMYALWILGRNLEASLGPARFLALYLISGLGGNVAA 193
Query: 226 YRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMV 277
Y N+ GAS AIFGL A+F++ R LG ++ + +++ N+V
Sbjct: 194 YLISAPNAATAGASTAIFGLFA--ALFVVGRR--LG---RDVSQVLPILVINLV 240
>gi|83646149|ref|YP_434584.1| hypothetical protein HCH_03410 [Hahella chejuensis KCTC 2396]
gi|83634192|gb|ABC30159.1| uncharacterized membrane protein [Hahella chejuensis KCTC 2396]
Length = 294
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 2/104 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
+L WGA + GQ+WRL + FLH I HL +N ++L G +E++ G R+L ++
Sbjct: 47 MLQWGANFSPATQNGQWWRLDAAIFLHFGIVHLTLNAWALWDGGQWVERMYGQMRFLIIF 106
Query: 215 FSSAIASS--AMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRN 256
+S + + +++ + + GASG IFG+ G+ ++ +++
Sbjct: 107 ITSGLIGNLFSLALHVVSVVSAGASGGIFGVYGALLSYLWLNKS 150
>gi|336176302|ref|YP_004581677.1| rhomboid family protein [Frankia symbiont of Datisca glomerata]
gi|334857282|gb|AEH07756.1| Rhomboid family protein [Frankia symbiont of Datisca glomerata]
Length = 377
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 9/120 (7%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF- 228
+++RL T+AFLHA + H++ N Y+L +G +E+I G RYL ++ AI + +SY
Sbjct: 205 EYYRLLTAAFLHAGVLHILFNMYALYLLGSQLEQILGRARYLALFVVCAIGGNTLSYLIN 264
Query: 229 -CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANIVK 287
N+ +VGAS A+FG ++ V R R + + ++ N++ + A I K
Sbjct: 265 GWNTFSVGASTAVFGFFAAYYVIARRLR-------ADTSAILIIVGINLIITFTIARIDK 317
>gi|45658531|ref|YP_002617.1| hypothetical protein LIC12696 [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|421085386|ref|ZP_15546239.1| peptidase, S54 family [Leptospira santarosai str. HAI1594]
gi|421103683|ref|ZP_15564280.1| peptidase, S54 family [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|45601774|gb|AAS71254.1| conserved hypothetical protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|410366646|gb|EKP22037.1| peptidase, S54 family [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410432022|gb|EKP76380.1| peptidase, S54 family [Leptospira santarosai str. HAI1594]
gi|456984467|gb|EMG20522.1| peptidase, S54 family [Leptospira interrogans serovar Copenhageni
str. LT2050]
Length = 239
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 83 LLEWGANRRIETL--AGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 140
Query: 213 VY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
+Y FS S A + N+ +VGASGAIFGL G+
Sbjct: 141 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGA 175
>gi|227494200|ref|ZP_03924516.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
gi|226831934|gb|EEH64317.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
Length = 309
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 84/169 (49%), Gaps = 22/169 (13%)
Query: 100 LSFFNGGGTRKNSGHEGTSHLDTARTNLF--IGRQWTNILLAVNV---LVYIAQFATQDK 154
L ++GG K + + + TA+ +F +G TN+++A+ V L+ + A +
Sbjct: 63 LKIYSGG---KTQAPQPAAAVKTAKNKVFAKLGYSVTNVIIAITVATSLLAMLIPAVGNF 119
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L N ++ + WR T +H + HL +N YSL +G ++E++ G RYL +Y
Sbjct: 120 LFF-----NPILGYKEPWRFLTVMLVHGGLIHLALNMYSLYLVGNSLERVLGTYRYLALY 174
Query: 215 FSSAIASS-------AMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRN 256
+S + S +S VGASGAIFGL AV++++ ++
Sbjct: 175 VASGLGGSLAVLLWAMVSLDSFYHVTVGASGAIFGLFA--AVYVVQRKS 221
>gi|225455418|ref|XP_002279126.1| PREDICTED: inactive rhomboid protein 1 isoform 2 [Vitis vinifera]
Length = 278
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
++ K Q WRL T +LHA I HL+VN SL IG +E+ G R +Y S S +
Sbjct: 105 VVSKHQGWRLVTCIWLHAGIIHLLVNMLSLVLIGIRLEQQFGFVRIGVIYLLSGFGGSVL 164
Query: 225 SYRFC-NSPAVGASGAIFGLVGSF 247
S F NS +VGASGA+FGL+G+
Sbjct: 165 SSLFIQNSISVGASGALFGLLGAM 188
>gi|73540854|ref|YP_295374.1| rhomboid-like protein [Ralstonia eutropha JMP134]
gi|72118267|gb|AAZ60530.1| Rhomboid-like protein [Ralstonia eutropha JMP134]
Length = 155
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 15/125 (12%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL----LWGAKINSLIDKGQF----WRLATSAFLHANIA 185
T +L+ +N++ + + AT L LW I + G+ W+L T FLHAN+A
Sbjct: 14 TTLLILLNIVAFSGEVATDGALAQQFALW-PPILGMPADGEVGFAPWQLLTYGFLHANLA 72
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF------CNSPAVGASGA 239
HL N L G ++E GP R L VY +S +++ + + P +GASGA
Sbjct: 73 HLAFNMLGLWMFGRSVEASLGPGRMLAVYLASLVSAGLIQLAVLGYIAPAHMPTIGASGA 132
Query: 240 IFGLV 244
+FGL+
Sbjct: 133 VFGLL 137
>gi|115486807|ref|NP_001068547.1| Os11g0704800 [Oryza sativa Japonica Group]
gi|62733172|gb|AAX95289.1| Rhomboid family, putative [Oryza sativa Japonica Group]
gi|77552712|gb|ABA95509.1| rhomboid family protein, putative, expressed [Oryza sativa Japonica
Group]
gi|113645769|dbj|BAF28910.1| Os11g0704800 [Oryza sativa Japonica Group]
Length = 374
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 61/117 (52%), Gaps = 1/117 (0%)
Query: 161 KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIA 220
+ ++ Q WRL T +LHA + HL++N L IG +E+ G R VY S +
Sbjct: 104 DVTKVVHGHQGWRLITCIWLHAGVVHLLINMLCLLFIGIRLEQEFGFVRIGLVYLISGLG 163
Query: 221 SSAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNM 276
S MS F S +VGASGA+FGL+GS ++ + ++ L L VI+ N+
Sbjct: 164 GSLMSALFIRSSISVGASGALFGLIGSMLSELITNWSLYANKVAALLTLVFVIVVNL 220
>gi|407478437|ref|YP_006792314.1| rhomboid family protein [Exiguobacterium antarcticum B7]
gi|407062516|gb|AFS71706.1| Rhomboid family protein [Exiguobacterium antarcticum B7]
Length = 248
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 8/131 (6%)
Query: 156 LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
L +GA IN I G++WR+ T+ FLH + H+ N ++L P +E++ G ++ Y
Sbjct: 45 LSYGAAINLFIGNGEWWRVVTATFLHYDFWHIAFNTFALIIFAPALERMIGHAKFASFYL 104
Query: 216 SSAIASSAMSY-RFCNSP---AVGASGAIFGLVGSFAVFIMRH-RNILGGGKEELQHLAK 270
++ ++Y N P GASGAI GL+G F V++ R R ++ L ++
Sbjct: 105 LVGTLANVLTYFTKINEPFYGQAGASGAILGLLG-FYVYLGRFKRTVISADDARLVYIFS 163
Query: 271 VI--IFNMVCS 279
I IF ++ S
Sbjct: 164 AITAIFTLLGS 174
>gi|161522943|ref|YP_001585872.1| rhomboid family protein [Burkholderia multivorans ATCC 17616]
gi|189348227|ref|YP_001941423.1| membrane protein [Burkholderia multivorans ATCC 17616]
gi|160346496|gb|ABX19580.1| Rhomboid family protein [Burkholderia multivorans ATCC 17616]
gi|189338365|dbj|BAG47433.1| uncharacterized membrane protein [Burkholderia multivorans ATCC
17616]
Length = 197
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 12/137 (8%)
Query: 134 TNILLAVNVLVYIAQFATQ----DKLLLWG-AKINSLIDKG-QFWRLATSAFLHANIAHL 187
T L+ VNV V+IA+ + D+ LW A+ + G W+L T + LHA++AH+
Sbjct: 2 TYALILVNVAVFIAEASGWPMLIDQFALWPPARPGAPATPGFHVWQLLTYSVLHASLAHI 61
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC------NSPAVGASGAIF 241
N + L G +E++ G R+L +Y +S +A + ++P VGAS +F
Sbjct: 62 AFNMFGLYMFGRDVERVLGRARFLALYLASVLAGAITQLAVIRALPPSDAPTVGASAGVF 121
Query: 242 GLVGSFAVFIMRHRNIL 258
G + ++AV + R +L
Sbjct: 122 GALIAYAVLFPKRRVVL 138
>gi|283797031|ref|ZP_06346184.1| rhomboid protease GluP [Clostridium sp. M62/1]
gi|291075447|gb|EFE12811.1| peptidase, S54 family [Clostridium sp. M62/1]
Length = 205
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 59/108 (54%), Gaps = 7/108 (6%)
Query: 159 GAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
GA I L+ + G+++RL TS FLH +I HL+ N L +G +E+I G RYL Y
Sbjct: 41 GAVIPVLVVENGEYYRLITSVFLHFSIRHLLNNMLVLFILGDRLEQILGGVRYLLFYLLC 100
Query: 218 AIASSAMSYRF------CNSPAVGASGAIFGLVGSFAVFIMRHRNILG 259
+ ++ +S F + + GASGAIFG+VG + +R LG
Sbjct: 101 GLGANIVSLIFDLKMGDWYTMSAGASGAIFGVVGGLMWIVFMNRGRLG 148
>gi|428183558|gb|EKX52415.1| hypothetical protein GUITHDRAFT_161181 [Guillardia theta CCMP2712]
Length = 352
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 12/151 (7%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDK-----------LLLWGAKINSLIDKGQFWRLATSAF 179
+ + I+ + VLV++ + A + L + G K+ LI G++WRL T
Sbjct: 119 QTFIGIITMLQVLVFVIEVALSNSWSAILDVPSPVLAVMGGKVAPLIAAGEYWRLITPIM 178
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASG 238
LHA + HL++N ++ G +E+ G + +Y + I + +S F + ++G SG
Sbjct: 179 LHAGLFHLLINAFTQCMFGIQLEREWGAAQIAIIYVCAGIYGNILSVLFAPQALSIGCSG 238
Query: 239 AIFGLVGSFAVFIMRHRNILGGGKEELQHLA 269
AIFGL G+ +I LG ++++ L+
Sbjct: 239 AIFGLFGAQVAYITGMWRQLGDLQKKMLILS 269
>gi|194016002|ref|ZP_03054617.1| conserved membrane protein YdcA [Bacillus pumilus ATCC 7061]
gi|194012357|gb|EDW21924.1| conserved membrane protein YdcA [Bacillus pumilus ATCC 7061]
Length = 201
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
N + G++WRL T FLH ++ H++ N SL P +E + G R+L +Y + +
Sbjct: 50 NYGVATGEWWRLVTPIFLHGSLTHILFNSMSLFLFAPALEHLLGKVRFLIIYLGAGFIGN 109
Query: 223 AMSYRF--CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEE--LQHLAKVIIFNMVC 278
+Y VGASGAIFGL G + ++ +++ G + L LA +I V
Sbjct: 110 LGTYWVEPLEYVHVGASGAIFGLFGVYLYLVLFKPHMMDRGNSQVILTILAVSVIMTFVN 169
Query: 279 S 279
S
Sbjct: 170 S 170
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.325 0.136 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,699,958,244
Number of Sequences: 23463169
Number of extensions: 185425570
Number of successful extensions: 469247
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3014
Number of HSP's successfully gapped in prelim test: 2468
Number of HSP's that attempted gapping in prelim test: 462137
Number of HSP's gapped (non-prelim): 5926
length of query: 309
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 167
effective length of database: 9,027,425,369
effective search space: 1507580036623
effective search space used: 1507580036623
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 76 (33.9 bits)