BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021695
(309 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XOV|A Chain A, Crystal Structure Of E.Coli Rhomboid Protease Glpg, Native
Enzyme
Length = 181
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
T +++ V+V+IA Q +++LW A K +FWR T A +H ++ H++ N
Sbjct: 7 TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 66
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
+G +EK G + + + SA+ S + +F G SG ++ L+G
Sbjct: 67 WWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMG 119
>pdb|3B45|A Chain A, Crystal Structure Of Glpg At 1.9a Resolution
Length = 180
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
T +++ V+V+IA Q +++LW A K +FWR T A +H ++ H++ N
Sbjct: 7 TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 66
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
+G +EK G + + + SA+ S + +F G SG ++ L+G
Sbjct: 67 WWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMG 119
>pdb|2IC8|A Chain A, Crystal Structure Of Glpg
pdb|2NRF|A Chain A, Crystal Structure Of Glpg, A Rhomboid Family Intramembrane
Protease
pdb|2NRF|B Chain B, Crystal Structure Of Glpg, A Rhomboid Family Intramembrane
Protease
pdb|3UBB|A Chain A, The Crystal Structure Of Glpg In Complex With A
Phosphonofluoridate Inhibitor
Length = 182
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
T +++ V+V+IA Q +++LW A K +FWR T A +H ++ H++ N
Sbjct: 7 TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 66
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
+G +EK G + + + SA+ S + +F G SG ++ L+G
Sbjct: 67 WWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMG 119
>pdb|2IRV|A Chain A, Crystal Structure Of Glpg, A Rhomboid Intramembrane Serine
Protease
pdb|2IRV|B Chain B, Crystal Structure Of Glpg, A Rhomboid Intramembrane Serine
Protease
Length = 182
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
T +++ V+V+IA Q +++LW A K +FWR T A +H ++ H++ N
Sbjct: 6 TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 65
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
+G +EK G + + + SA+ S + +F G SG ++ L+G
Sbjct: 66 WWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMG 118
>pdb|2XOW|A Chain A, Structure Of Glpg In Complex With A Mechanism-Based
Isocoumarin Inhibitor
pdb|3TXT|A Chain A, Crystal Structure Of Glpg In Complex With Inhibitor Dfp
pdb|3ZEB|A Chain A, A Complex Of Glpg With Isocoumarin Inhibitor Covalently
Bonded To Serine 201 And Histidine 150
Length = 179
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
T +++ V+V+IA Q +++LW A K +FWR T A +H ++ H++ N
Sbjct: 6 TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 65
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
+G +EK G + + + SA+ S + +F G SG ++ L+G
Sbjct: 66 WWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMG 118
>pdb|2O7L|A Chain A, The Open-Cap Conformation Of Glpg
Length = 180
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
T +++ V+V+IA Q +++LW A K +FWR T A +H ++ H++ N
Sbjct: 5 TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 64
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
+G +EK G + + + SA+ S + +F G SG ++ L+G
Sbjct: 65 WWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMG 117
>pdb|2XTU|A Chain A, Structure Of E.Coli Rhomboid Protease Glpg Active Site
Mutant, S201t In Trigonal Crystal Form
Length = 181
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
T +++ V+V+IA Q +++LW A K +FWR T A +H ++ H++ N
Sbjct: 7 TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 66
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
+G +EK G + + + SA+ S + +F G +G ++ L+G
Sbjct: 67 WWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLTGVVYALMG 119
>pdb|2XTV|A Chain A, Structure Of E.Coli Rhomboid Protease Glpg, Active Site
Mutant, S201t, Orthorhombic Crystal Form
Length = 180
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
T +++ V+V+IA Q +++LW A K +FWR T A +H ++ H++ N
Sbjct: 5 TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 64
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
+G +EK G + + + SA+ S + +F G +G ++ L+G
Sbjct: 65 WWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLTGVVYALMG 117
>pdb|3B44|A Chain A, Crystal Structure Of Glpg W136a Mutant
Length = 180
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
T +++ V+V+IA Q +++LW A K +F R T A +H ++ H++ N
Sbjct: 7 TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFARYFTHALMHFSLMHILFNLL 66
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
+G +EK G + + + SA+ S + +F G SG ++ L+G
Sbjct: 67 WWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMG 119
>pdb|2NR9|A Chain A, Crystal Structure Of Glpg, Rhomboid Peptidase From
Haemophilus Influenzae
pdb|3ODJ|A Chain A, Crystal Structure Of H. Influenzae Rhomboid Glpg With
Disordered Loop 4, Helix 5 And Loop 5
Length = 196
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 7/126 (5%)
Query: 134 TNILLAVNVLVYIAQ-FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
T IL A+ VL+YIAQ +D ++ + WR + +H + H++ N
Sbjct: 12 TLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLS 71
Query: 193 SLNSIGPTMEKICGPRRYLGVYF-SSAIASSAMSYRFCNSPAV-GASGAIFGLVGSFAVF 250
G +E+ G + L +Y +SAI +Y + PA G SG ++ ++G VF
Sbjct: 72 WFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNY--VSGPAFFGLSGVVYAVLGY--VF 127
Query: 251 IMRHRN 256
I N
Sbjct: 128 IRDKLN 133
>pdb|3FDD|A Chain A, The Crystal Structure Of The Pseudomonas Dacunhae
Aspartate-Beta- Decarboxylase Reveals A Novel Oligomeric
Assembly For A Pyridoxal-5- Phosphate Dependent Enzyme
Length = 533
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 207 PRR---YLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILG 259
PRR LG++ A A S +SY + N+ VG I G+ G F +I +R+ G
Sbjct: 47 PRRAFFRLGLF---AAAESELSYSYMNTVGVGGLAKIEGIEGRFERYIAENRDQEG 99
>pdb|1DGM|A Chain A, Crystal Structure Of Adenosine Kinase From Toxoplasma
Gondii
Length = 363
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 251 IMRHRNILGGGKEELQHLAKV 271
++ H NIL G +EE HLAKV
Sbjct: 213 LLLHTNILFGNEEEFAHLAKV 233
>pdb|1LIO|A Chain A, Structure Of Apo T. Gondii Adenosine Kinase
Length = 363
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 251 IMRHRNILGGGKEELQHLAKV 271
++ H NIL G +EE HLAKV
Sbjct: 213 LLLHTNILFGNEEEFAHLAKV 233
>pdb|1LII|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
2 And Amp-Pcp
pdb|1LIJ|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Prodrug 2
7-Iodotubercidin And Amp-Pcp
pdb|1LIK|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
Length = 363
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 251 IMRHRNILGGGKEELQHLAKV 271
++ H NIL G +EE HLAKV
Sbjct: 213 LLLHTNILFGNEEEFAHLAKV 233
>pdb|2ABS|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With Amp-Pcp
pdb|2A9Y|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine
pdb|2A9Z|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine And Amp-Pcp
pdb|2AA0|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside
pdb|2AB8|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside And Amp-Pcp
Length = 383
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 251 IMRHRNILGGGKEELQHLAKV 271
++ H NIL G +EE HLAKV
Sbjct: 233 LLLHTNILFGNEEEFAHLAKV 253
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.136 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,087,027
Number of Sequences: 62578
Number of extensions: 286031
Number of successful extensions: 899
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 883
Number of HSP's gapped (non-prelim): 16
length of query: 309
length of database: 14,973,337
effective HSP length: 99
effective length of query: 210
effective length of database: 8,778,115
effective search space: 1843404150
effective search space used: 1843404150
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)