Query 021695
Match_columns 309
No_of_seqs 266 out of 1377
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 04:58:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021695.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021695hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00101 rhomboid-1 protease; 100.0 2.2E-28 4.8E-33 227.9 20.0 178 128-305 50-239 (278)
2 PRK10907 intramembrane serine 100.0 5.9E-28 1.3E-32 225.2 18.6 172 129-303 92-267 (276)
3 COG0705 Membrane associated se 99.9 5.1E-24 1.1E-28 193.1 17.1 173 130-302 16-207 (228)
4 KOG2289 Rhomboid family protei 99.9 7.9E-24 1.7E-28 199.3 5.3 143 157-300 105-248 (316)
5 PF01694 Rhomboid: Rhomboid fa 99.9 9.8E-23 2.1E-27 171.0 5.9 139 167-306 2-142 (145)
6 KOG2632 Rhomboid family protei 99.8 8.2E-18 1.8E-22 153.4 14.2 174 126-302 10-194 (258)
7 KOG2290 Rhomboid family protei 99.6 1.4E-15 2.9E-20 147.1 6.2 132 168-301 448-580 (652)
8 KOG2980 Integral membrane prot 98.9 5.6E-10 1.2E-14 104.1 3.1 167 133-301 117-296 (310)
9 PF04511 DER1: Der1-like famil 98.9 2.2E-08 4.7E-13 89.4 11.8 169 131-303 2-179 (197)
10 PF08551 DUF1751: Eukaryotic i 98.4 2.9E-07 6.2E-12 73.6 3.7 76 170-245 7-95 (99)
11 KOG0858 Predicted membrane pro 98.4 1.3E-06 2.9E-11 79.4 7.9 99 128-226 10-112 (239)
12 KOG2890 Predicted membrane pro 97.1 0.0033 7.2E-08 59.3 9.2 86 169-254 65-163 (326)
13 COG5291 Predicted membrane pro 96.5 0.006 1.3E-07 56.1 6.1 88 130-220 19-113 (313)
14 KOG4463 Uncharacterized conser 95.8 0.013 2.8E-07 54.4 4.6 95 131-227 11-106 (323)
15 COG0705 Membrane associated se 64.8 20 0.00044 32.0 6.4 78 165-255 134-211 (228)
16 PF09527 ATPase_gene1: Putativ 37.1 1.4E+02 0.003 20.6 6.4 41 186-226 9-50 (55)
17 TIGR02854 spore_II_GA sigma-E 36.1 3.4E+02 0.0073 25.6 9.8 38 185-226 11-48 (288)
18 PF03419 Peptidase_U4: Sporula 31.8 2.7E+02 0.0058 26.1 8.4 38 185-226 11-48 (293)
19 PF04892 VanZ: VanZ like famil 25.5 3.5E+02 0.0075 21.5 10.3 68 182-249 49-126 (133)
20 PF14898 DUF4491: Domain of un 23.7 1.5E+02 0.0033 23.5 4.2 46 201-251 26-71 (94)
No 1
>PTZ00101 rhomboid-1 protease; Provisional
Probab=99.96 E-value=2.2e-28 Score=227.90 Aligned_cols=178 Identities=22% Similarity=0.272 Sum_probs=136.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhc-------h--HHHHHhhhchhhhhccCCcchhhhhhcccCCHHHHHHHHHHHHHHH
Q 021695 128 FIGRQWTNILLAVNVLVYIAQFAT-------Q--DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIG 198 (309)
Q Consensus 128 ~~~~~~t~~LI~i~v~vfll~~~~-------~--~~l~~~g~~~~~~i~~gq~WRLlTs~FlH~~~~HLl~Nm~~L~~~G 198 (309)
.+.+.+|..++++++++|++.... + ..+..+|+..+..+.++||||++|++|+|.|+.|+++||+.++.+|
T Consensus 50 f~i~~l~~~Iiii~iivfil~l~~~~~~~l~p~~~~L~~~Ga~~~~~i~~gq~WRLiT~~FlH~~~~HLl~Nm~~l~~~G 129 (278)
T PTZ00101 50 FTWKSFIMAISIIQIIVFIISVSIKPADFLTPSDSLLVTLGANVASRIKQGEIHRLILPIFLHANIFHTFFNVFFQLRMG 129 (278)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHhCcchhhhhcCCCHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 345788999999999999986552 1 1456778877778889999999999999999999999999999999
Q ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC-CceechHHHHHHHHHHHHHHHHhhhhhccCchHHHHHHHHHHHH--H
Q 021695 199 PTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF--N 275 (309)
Q Consensus 199 ~~lE~~~G~~~fl~lyl~sgi~g~l~s~l~~~-~~~vGaSGaIfGLlga~~~~~~~~~~~~~~~~~~~~~i~~~l~l--~ 275 (309)
..+|+.+|++|++.+|+++|+.|++++..+.+ ..++||||++||++|+++......+............+....++ .
T Consensus 130 ~~lE~~~G~~r~~ilYl~sGi~G~l~s~~~~~~~~svGASgAifGLiGa~~~~lil~w~~~~~~~~~~~~~i~~~li~~~ 209 (278)
T PTZ00101 130 FTLEKNYGIVKIIILYFLTGIYGNILSSSVTYCPIKVGASTSGMGLLGIVTSELILLWHVIRHRERVVFNIIFFSLISFF 209 (278)
T ss_pred HHHHHHHChHHHHHHHHHHHHHHHHHHHHHccCCcEEehhHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987654 56899999999999999765444332222111111111111111 2
Q ss_pred HHHHhccCChhHHHHHHHHHHHHHHHHccC
Q 021695 276 MVCSAAFANIVKIESRHTLTGETCYFIDPS 305 (309)
Q Consensus 276 lv~~ll~~~v~~~aHLgG~l~G~~~~l~~~ 305 (309)
+...+..+++|++||+||+++|++.....+
T Consensus 210 l~~~~~g~~Id~~aHlGG~i~G~llg~~~~ 239 (278)
T PTZ00101 210 YYFTFNGSNIDHVGHLGGLLSGISMGILYN 239 (278)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 223344578999999999999987655433
No 2
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=99.96 E-value=5.9e-28 Score=225.18 Aligned_cols=172 Identities=20% Similarity=0.156 Sum_probs=131.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHhchH-HHHHhhhchhhhhccCCcchhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhCh
Q 021695 129 IGRQWTNILLAVNVLVYIAQFATQD-KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207 (309)
Q Consensus 129 ~~~~~t~~LI~i~v~vfll~~~~~~-~l~~~g~~~~~~i~~gq~WRLlTs~FlH~~~~HLl~Nm~~L~~~G~~lE~~~G~ 207 (309)
+..|+|..++++|+++|+++..... ....+...+......+||||++|++|+|.|+.|+++||+++|.+|..+|+.+|+
T Consensus 92 ~~~p~T~~li~i~i~vf~l~~~~~~~~~~~~l~~~~~~~~~~q~WRl~T~~flH~~~~Hl~fNml~l~~lG~~iE~~~G~ 171 (276)
T PRK10907 92 RAGPLTLGVMIACVVVFILMQILGDQTVMLWLAWPFDPSLKFELWRYFTHALLHFSLLHILFNLLWWWYLGGAVEKRLGS 171 (276)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhccHHHHHHHhccccccccCCcHHHHhHHHHhCCHHHHHHHHHHHHHHHHHHHHHHCh
Confidence 3567999999999999998876533 233444333344568999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceechHHHHHHHHHHHHHHHHhhhhhccCchHHHHHHHHHHHHHHH---HHhccCC
Q 021695 208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMV---CSAAFAN 284 (309)
Q Consensus 208 ~~fl~lyl~sgi~g~l~s~l~~~~~~vGaSGaIfGLlga~~~~~~~~~~~~~~~~~~~~~i~~~l~l~lv---~~ll~~~ 284 (309)
++++.+|+++++.++++++++.....+|+||+|||++++......+.+......++. +....++.++ .+++.++
T Consensus 172 ~~~l~l~l~s~i~~~~~~~~~~~~~~gGaSGvVygL~g~~~~~~~~~p~~~~~lp~~---~~~f~llwl~~g~~~~~g~~ 248 (276)
T PRK10907 172 GKLIVITLISALLSGWVQSKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGIYLPRG---LIAFALLWLVAGYFDLFGMS 248 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHhccccccchhhhHH---HHHHHHHHHHHHHHHccCcc
Confidence 999999999999999999988777889999999999997655433322211111111 1222222232 4455678
Q ss_pred hhHHHHHHHHHHHHHHHHc
Q 021695 285 IVKIESRHTLTGETCYFID 303 (309)
Q Consensus 285 v~~~aHLgG~l~G~~~~l~ 303 (309)
|+++||++|+++|++..+.
T Consensus 249 Ian~AHlgGli~Gll~g~~ 267 (276)
T PRK10907 249 IANAAHVAGLAVGLAMAFW 267 (276)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876543
No 3
>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]
Probab=99.92 E-value=5.1e-24 Score=193.13 Aligned_cols=173 Identities=27% Similarity=0.399 Sum_probs=132.2
Q ss_pred chhHHHHHHHHHHHHHHHHHhchHH-HHH-------hhhchhhhhccC---CcchhhhhhcccCCHHHHHHHHHHHHHHH
Q 021695 130 GRQWTNILLAVNVLVYIAQFATQDK-LLL-------WGAKINSLIDKG---QFWRLATSAFLHANIAHLMVNCYSLNSIG 198 (309)
Q Consensus 130 ~~~~t~~LI~i~v~vfll~~~~~~~-l~~-------~g~~~~~~i~~g---q~WRLlTs~FlH~~~~HLl~Nm~~L~~~G 198 (309)
.++.|..++.+|+++|+........ ... .+..+....... |+||++|++|+|.|+.|+++||+.+|.+|
T Consensus 16 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~lit~~FlH~~~~Hll~N~~~l~~fg 95 (228)
T COG0705 16 APPVTLFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRLITAIFLHAGFLHLLFNMLALWVFG 95 (228)
T ss_pred cchHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhHHhhcchhhhccccccchHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 4788999999999999988765332 111 222222222111 89999999999999999999999999999
Q ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC---CceechHHHHHHHHHHHHHHHHhhhhhccC--chH-HHHHHHHHH
Q 021695 199 PTMEKICGPRRYLGVYFSSAIASSAMSYRFCN---SPAVGASGAIFGLVGSFAVFIMRHRNILGG--GKE-ELQHLAKVI 272 (309)
Q Consensus 199 ~~lE~~~G~~~fl~lyl~sgi~g~l~s~l~~~---~~~vGaSGaIfGLlga~~~~~~~~~~~~~~--~~~-~~~~i~~~l 272 (309)
..+|+..|+.+|+.+|+++|+++++.+..+.+ .+++||||++||++++++...+..+..... .++ ....+...+
T Consensus 96 ~~le~~~G~~~f~~~yl~~gl~~~~~~~~~~~~~~~~~~GASG~i~gllga~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 175 (228)
T COG0705 96 SNLERRLGTLRFLLFYLLSGLLAGLAQVLFGPKGGAPSLGASGAIFGLLGAYFLLFPFARILLLFLSLPRPALILILIWL 175 (228)
T ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHHHHHcccccCcccchhHHHHHHHHHHHHHccccchhhhhccCchhHHHHHHHHH
Confidence 99999999999999999999999999888764 369999999999999999999988754433 222 222233333
Q ss_pred HHHHHHHhccC--ChhHHHHHHHHHHHHHHHH
Q 021695 273 IFNMVCSAAFA--NIVKIESRHTLTGETCYFI 302 (309)
Q Consensus 273 ~l~lv~~ll~~--~v~~~aHLgG~l~G~~~~l 302 (309)
+..++...... ++++++|++|+++|.++..
T Consensus 176 ~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~ 207 (228)
T COG0705 176 LYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAA 207 (228)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH
Confidence 44444444432 5899999999999987763
No 4
>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=99.89 E-value=7.9e-24 Score=199.35 Aligned_cols=143 Identities=29% Similarity=0.399 Sum_probs=124.8
Q ss_pred HhhhchhhhhccCCcchhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC-Cceec
Q 021695 157 LWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVG 235 (309)
Q Consensus 157 ~~g~~~~~~i~~gq~WRLlTs~FlH~~~~HLl~Nm~~L~~~G~~lE~~~G~~~fl~lyl~sgi~g~l~s~l~~~-~~~vG 235 (309)
.++......++++|+||++|++|+|+|+.||++||+.+.++|..+|+..|.+|+.++|+++++.|++++.++.+ ..+||
T Consensus 105 ~~~~~i~~~~~r~E~WRllTym~LHaGi~HL~~N~~~ql~iGi~LE~~~G~~RiglIYl~gg~aGSlls~l~d~~~~sVG 184 (316)
T KOG2289|consen 105 MGGLLIYKPVHRGELWRLLTYMWLHAGIFHLLLNMLSQLFIGIPLEQVHGFLRIGLIYLAGGVAGSLLSSLFDPNSISVG 184 (316)
T ss_pred cCCceecChhhhchhHHHHHHHHHhcCHHHHHHHHHHHHhccccHHhhcCceEEeeehhhhhhhhHHHHHHhccCCceec
Confidence 34555677788999999999999999999999999999999999999999999999999999999999999986 45999
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 021695 236 ASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANIVKIESRHTLTGETCY 300 (309)
Q Consensus 236 aSGaIfGLlga~~~~~~~~~~~~~~~~~~~~~i~~~l~l~lv~~ll~~~v~~~aHLgG~l~G~~~ 300 (309)
|||++|||+||.+.....++..+......++.++.++.+++-+|+. +.+|+++|+||+++|..+
T Consensus 185 ASggvfaLlgA~Ls~l~~Nw~~m~~~~~~l~~ll~Ii~i~l~~G~~-~~~~~~~h~gg~~~G~~~ 248 (316)
T KOG2289|consen 185 ASGGVFALLGAHLSNLLTNWTIMKNKFAALRTLLIIIFINLDLGFA-PYVDNFAHIGGLLAGFLL 248 (316)
T ss_pred ccHHHHHHHHHHHHHHHhhHHHhcchHHHHHHHHHHHHHHHhhccc-cceeccccccccCCCcch
Confidence 9999999999999998888877665444566666666777778876 679999999999997543
No 5
>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=99.87 E-value=9.8e-23 Score=170.98 Aligned_cols=139 Identities=32% Similarity=0.468 Sum_probs=104.1
Q ss_pred ccCCcchhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCC--ceechHHHHHHHH
Q 021695 167 DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS--PAVGASGAIFGLV 244 (309)
Q Consensus 167 ~~gq~WRLlTs~FlH~~~~HLl~Nm~~L~~~G~~lE~~~G~~~fl~lyl~sgi~g~l~s~l~~~~--~~vGaSGaIfGLl 244 (309)
+++|+||++|++|+|.|+.|+++|++.++.+|..+|+.+|++++..+|+.+++.++++..++.+. +.+|+||+++|++
T Consensus 2 ~~~~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~~G~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~G~Sg~~~~l~ 81 (145)
T PF01694_consen 2 QNGQWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERRLGSRRFLALYLLSGLLGSLLSLLFSPPNQPYVGASGAVFGLL 81 (145)
T ss_dssp GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S-----SSHHHHHHHH
T ss_pred CCCcchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhhccchHHHHHHHHHHHhhhhccccccccccccCCCcccchHHH
Confidence 67999999999999999999999999999999999999999999999999999999999887643 5999999999999
Q ss_pred HHHHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHccCC
Q 021695 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANIVKIESRHTLTGETCYFIDPSK 306 (309)
Q Consensus 245 ga~~~~~~~~~~~~~~~~~~~~~i~~~l~l~lv~~ll~~~v~~~aHLgG~l~G~~~~l~~~~ 306 (309)
++.+...++.++...............+.+.+..+. .+++++.+|++|+++|+++....+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~hl~G~~~G~~~~~~~~~ 142 (145)
T PF01694_consen 82 GAFLFLYPQNKKRLRFIYLALVVPIIVLVIILLLGF-IPNISFLGHLGGFLAGLLYGFLILR 142 (145)
T ss_dssp HHHHHHHHCCCCCS---HCCCCCCCCCCCHHHCTSS-SSTTTHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHhhccchhhcchHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998864333211111111111222222333 6889999999999999888655443
No 6
>KOG2632 consensus Rhomboid family proteins [Function unknown]
Probab=99.76 E-value=8.2e-18 Score=153.44 Aligned_cols=174 Identities=18% Similarity=0.173 Sum_probs=134.8
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhchHHHHHhhhchhhhhccCCcchhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHh
Q 021695 126 NLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKIC 205 (309)
Q Consensus 126 ~~~~~~~~t~~LI~i~v~vfll~~~~~~~l~~~g~~~~~~i~~gq~WRLlTs~FlH~~~~HLl~Nm~~L~~~G~~lE~~~ 205 (309)
.+.+.+.+|..++.++.++|+......-. .....+.....+.|.||++||+++|.+..|+++||+++|.+|...|+..
T Consensus 10 ~~~~~p~~ts~~~~~~~~i~lv~~~~~i~--~~~~l~~~~l~~~ql~RL~Ty~l~H~s~~hllfnmlaL~~~g~~fE~~~ 87 (258)
T KOG2632|consen 10 FWMKIPLLTSIVVVLAILIYLVSFFPGIV--EVLGLPSELLINWQLYRLITYALVHLSLPHLLFNMLALWPLGSQFERTH 87 (258)
T ss_pred ccccchHHHHHHHHHHHHHHHHhccchhh--hHhcCCHHHhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhchhHHHhhc
Confidence 33455788999999999999887655322 2223345566789999999999999999999999999999999999999
Q ss_pred C-hHHHHHHHHHHHHHHHHHHHHhc----------CCceechHHHHHHHHHHHHHHHHhhhhhccCchHHHHHHHHHHHH
Q 021695 206 G-PRRYLGVYFSSAIASSAMSYRFC----------NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274 (309)
Q Consensus 206 G-~~~fl~lyl~sgi~g~l~s~l~~----------~~~~vGaSGaIfGLlga~~~~~~~~~~~~~~~~~~~~~i~~~l~l 274 (309)
| +.+++.+....+++.+++.++.. ....+|.||..|++++......+.++..++..- .+.......+.
T Consensus 88 G~t~~~l~~~~llalf~gIl~ll~~~~~~~~d~~~~~~a~G~s~v~Fam~~~~~~~sp~r~~~~fg~~-siP~~l~Pw~l 166 (258)
T KOG2632|consen 88 GTTVRILMFTVLLALFSGILYLLAYHVFLLSDLVYVEGAIGFSGVLFAMMAVLEVQSPVRSRSVFGLF-SIPIVLAPWAL 166 (258)
T ss_pred cceehHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccccHHHHHHHHHHhhcCcccchhhcccc-cccHHHHHHHH
Confidence 9 88888888888999888876543 245799999999999998888877774433321 11222334444
Q ss_pred HHHHHhccCChhHHHHHHHHHHHHHHHH
Q 021695 275 NMVCSAAFANIVKIESRHTLTGETCYFI 302 (309)
Q Consensus 275 ~lv~~ll~~~v~~~aHLgG~l~G~~~~l 302 (309)
.....++.|+.|+++|++|+++|++|..
T Consensus 167 Li~~~~lvp~aSFlghl~GllvG~ay~~ 194 (258)
T KOG2632|consen 167 LIATQILVPQASFLGHLCGLLVGYAYAF 194 (258)
T ss_pred HHHHHHHccCchHHHHHHHHHHHHHHHH
Confidence 4556677799999999999999998876
No 7
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=99.59 E-value=1.4e-15 Score=147.11 Aligned_cols=132 Identities=24% Similarity=0.282 Sum_probs=111.4
Q ss_pred cCCcchhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC-CceechHHHHHHHHHH
Q 021695 168 KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLVGS 246 (309)
Q Consensus 168 ~gq~WRLlTs~FlH~~~~HLl~Nm~~L~~~G~~lE~~~G~~~fl~lyl~sgi~g~l~s~l~~~-~~~vGaSGaIfGLlga 246 (309)
..|+||++||.|+|++..|++..|.....+-..+|+..|+.|..++|++||+.||+++..|.+ .+.||.||+-||++++
T Consensus 448 PdQfYRL~~SLFlHagviH~~vSi~FQm~vmrdlEkL~g~~riAIiy~~SGitGNLASAIFlpY~~eVgPa~sQ~Gila~ 527 (652)
T KOG2290|consen 448 PDQFYRLWLSLFLHAGVIHLLVSICFQMTVMRDLEKLAGWHRIAIIYFLSGITGNLASAIFLPYRAEVGPAGSQFGILAC 527 (652)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcchhhheeeecccccccchheeeeccccccCCcccccchHHH
Confidence 569999999999999999999999999999999999999999999999999999999998875 6799999999999999
Q ss_pred HHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHH
Q 021695 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAAFANIVKIESRHTLTGETCYF 301 (309)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~i~~~l~l~lv~~ll~~~v~~~aHLgG~l~G~~~~ 301 (309)
..+-....+..+..+...... +.+.++.+.+|++ |.||||+|+.|.+.|+...
T Consensus 528 l~vEl~qs~~il~~~w~a~~~-Lia~~L~L~iGli-PWiDN~aHlfG~i~GLl~s 580 (652)
T KOG2290|consen 528 LFVELFQSWQILERPWRAFFH-LIATLLVLCIGLI-PWIDNWAHLFGTIFGLLTS 580 (652)
T ss_pred HHHHHHhhhHhhhhHHHHHHH-HHHHHHHHHhccc-cchhhHHHHHHHHHHHHHH
Confidence 999888888766552222222 2333344555665 8999999999999997543
No 8
>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms]
Probab=98.92 E-value=5.6e-10 Score=104.11 Aligned_cols=167 Identities=17% Similarity=0.153 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHHHHhchHH--HHHhhhchhhhhccCCcchhhhhhcccCCHHHHHHHHHHHHHHHH-HHHHHhChHH
Q 021695 133 WTNILLAVNVLVYIAQFATQDK--LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGP-TMEKICGPRR 209 (309)
Q Consensus 133 ~t~~LI~i~v~vfll~~~~~~~--l~~~g~~~~~~i~~gq~WRLlTs~FlH~~~~HLl~Nm~~L~~~G~-~lE~~~G~~~ 209 (309)
++..++++|+.+|.+|....-. ...|...- .....-.|.+++|.|.|.+.+|+..||+.++.+.. .+....|...
T Consensus 117 ~v~~ll~~n~~vf~lWrv~~~~~~~~~~mls~--~~~~t~~w~i~~s~Fsh~~a~h~g~~~~~~~~y~~~a~~~~~~~~~ 194 (310)
T KOG2980|consen 117 VVFGLLIANAFVFTLWRVPQKQFTMIPWMLSR--NAYKTGCWKIILSTFSHYSALHLGPNMLVLKSYLAGALKGSLGFSS 194 (310)
T ss_pred chhHHHHHHHHHHHHHHhcchhhhhhhHHhhc--ccccccceeEEeehhcchhHhhhcHHHHHHHHHhcccccCCcchhh
Confidence 7889999999999999887542 22333221 12344567799999999999999999999999987 7888899999
Q ss_pred HHHHHHHHHHHHHHHHHHh-----cCCceechHHHHHHHHHHHHHHHHhhhhhccCch-HHH-HHHHH-HHHHHHHHHhc
Q 021695 210 YLGVYFSSAIASSAMSYRF-----CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGK-EEL-QHLAK-VIIFNMVCSAA 281 (309)
Q Consensus 210 fl~lyl~sgi~g~l~s~l~-----~~~~~vGaSGaIfGLlga~~~~~~~~~~~~~~~~-~~~-~~i~~-~l~l~lv~~ll 281 (309)
+.++|+.++..+..+...- -..+.+||||+++++++..+.++|+.+..+.... ... ..+.. .++...+.++.
T Consensus 195 ~~AlylSa~~~~~~i~~~~~v~~~~~gp~LGAsGav~ai~a~~~~lfP~~~~~i~f~~~v~~ga~~~~~~i~~~~~a~~~ 274 (310)
T KOG2980|consen 195 FFALYLSAGVKGLFISVKDKVPTSWAGPSLGASGAVYAILALDCTLFPKTTLYILFVFPVPAGAGLAFKAIAAYDFAGLI 274 (310)
T ss_pred cccceeccccccceeEeeccccccccccccccchHHHHHHHHHhhcCcCcceeEEEeecccccchhHHHHHHHhhhccee
Confidence 9999996555555544322 1256899999999999999999998885544321 111 11111 11111111111
Q ss_pred --cCChhHHHHHHHHHHHHHHH
Q 021695 282 --FANIVKIESRHTLTGETCYF 301 (309)
Q Consensus 282 --~~~v~~~aHLgG~l~G~~~~ 301 (309)
...-|+.+|++|-+.|..+.
T Consensus 275 l~~~~~n~~Ah~~gsl~Gv~va 296 (310)
T KOG2980|consen 275 LGWGFFNHAAHLSGSLFGVVVA 296 (310)
T ss_pred eccccchhHhhhcchHHHHHHH
Confidence 13457779999999886553
No 9
>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins. For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.
Probab=98.88 E-value=2.2e-08 Score=89.41 Aligned_cols=169 Identities=19% Similarity=0.115 Sum_probs=109.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhchHHHHHhhhchhhhhccCCcchhhhhhcccCCH-HHHHHHHHHHHHHHHHHHHH-h-Ch
Q 021695 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI-AHLMVNCYSLNSIGPTMEKI-C-GP 207 (309)
Q Consensus 131 ~~~t~~LI~i~v~vfll~~~~~~~l~~~g~~~~~~i~~gq~WRLlTs~FlH~~~-~HLl~Nm~~L~~~G~~lE~~-~-G~ 207 (309)
||+|+.+++.++++.++......+......+++..++++|+||++|+.|.-++. .++++|++.++..++.+|+. + ++
T Consensus 2 PpVTR~~~~~~~~~s~l~~~~~~~~~~l~~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~~~ 81 (197)
T PF04511_consen 2 PPVTRYWLISTVALSLLVSFGIISPYYLYFDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQGR 81 (197)
T ss_pred ChhHHHHHHHHHHHHHHHHCCCCCHHHeeECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCCCC
Confidence 689999999999998887765334444445556667789999999999987665 79999999999999999997 2 23
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhcCC----ceechHHHHHHHHHHHHHHHHhhhhh-ccCchHHHHHHHHHHHHHHHHHhc
Q 021695 208 -RRYLGVYFSSAIASSAMSYRFCNS----PAVGASGAIFGLVGSFAVFIMRHRNI-LGGGKEELQHLAKVIIFNMVCSAA 281 (309)
Q Consensus 208 -~~fl~lyl~sgi~g~l~s~l~~~~----~~vGaSGaIfGLlga~~~~~~~~~~~-~~~~~~~~~~i~~~l~l~lv~~ll 281 (309)
.+|+...+.+++.-.+++.+.... ...| +.....++=.++-..|+.+.. ++..+.+.+.+..+ .+++.++
T Consensus 82 ~ady~~~ll~~~~~i~~~~~~~~~~~~~~~~l~-~~l~~~l~Y~wsr~np~~~v~~~g~~~i~a~ylP~~---~~~~~~l 157 (197)
T PF04511_consen 82 SADYLWFLLFGASLILILSLLIGPYFFNIPFLG-SSLSFALTYIWSRKNPNAQVSFFGLFTIKAKYLPWV---LLAFSLL 157 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH-HHHHHHHHHHHHHhCcccceeeEEEEEEChhhHHHH---HHHHHHH
Confidence 678877777777666666644211 1222 333344433333333443422 33333344443322 2233333
Q ss_pred cCChhHHHHHHHHHHHHHHHHc
Q 021695 282 FANIVKIESRHTLTGETCYFID 303 (309)
Q Consensus 282 ~~~v~~~aHLgG~l~G~~~~l~ 303 (309)
..+.+...++-|+++|.+|.+.
T Consensus 158 ~~~~~~~~~l~Gi~~Ghly~fl 179 (197)
T PF04511_consen 158 FGGSSPIPDLLGILVGHLYYFL 179 (197)
T ss_pred hCCCcHHHHHHHHHHHHHHHHH
Confidence 3445677999999999887643
No 10
>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins. Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].
Probab=98.38 E-value=2.9e-07 Score=73.65 Aligned_cols=76 Identities=25% Similarity=0.447 Sum_probs=63.8
Q ss_pred CcchhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc--------C-----Cceech
Q 021695 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--------N-----SPAVGA 236 (309)
Q Consensus 170 q~WRLlTs~FlH~~~~HLl~Nm~~L~~~G~~lE~~~G~~~fl~lyl~sgi~g~l~s~l~~--------~-----~~~vGa 236 (309)
.+|+++|+.|++.++..+++|.+.++..|+.+|+.||+++++-++.+..+.+|+...... + .+.-|.
T Consensus 7 ~pWtl~T~~fve~~i~~~l~~~~~l~~~g~~lE~~WGs~E~lkFi~vv~~~tnl~~~~~~~~~y~i~~~~~~l~~~i~G~ 86 (99)
T PF08551_consen 7 YPWTLFTAGFVETNIIGLLFSLLTLFYGGRYLEPIWGSREFLKFILVVNVITNLLTFLLYLLLYAITGNESYLFVPISGF 86 (99)
T ss_pred ehHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCceeEEEecCc
Confidence 799999999999999999999999999999999999999999999999888888765431 1 234566
Q ss_pred HHHHHHHHH
Q 021695 237 SGAIFGLVG 245 (309)
Q Consensus 237 SGaIfGLlg 245 (309)
.|.+.|++.
T Consensus 87 ~~~~~g~lV 95 (99)
T PF08551_consen 87 MGVLAGFLV 95 (99)
T ss_pred HHhHhheEE
Confidence 666666544
No 11
>KOG0858 consensus Predicted membrane protein [Function unknown]
Probab=98.36 E-value=1.3e-06 Score=79.36 Aligned_cols=99 Identities=15% Similarity=0.085 Sum_probs=79.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhchHHHHHhhhchhhhhccCCcchhhhhhcccCC-HHHHHHHHHHHHHHHHHHHHHh-
Q 021695 128 FIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHAN-IAHLMVNCYSLNSIGPTMEKIC- 205 (309)
Q Consensus 128 ~~~~~~t~~LI~i~v~vfll~~~~~~~l~~~g~~~~~~i~~gq~WRLlTs~FlH~~-~~HLl~Nm~~L~~~G~~lE~~~- 205 (309)
.+-||+|+.....|++.-++....-.+....-..++-.+.+.|+||++|+.+.-+. -.|.++||+.++-..+.+|+-.
T Consensus 10 ~~iPpVTR~~~~~~v~tt~~~~l~lIsP~~l~~~p~Lv~kk~QiWRliTs~lyfg~~gf~fl~n~~FlyrY~~~LE~g~f 89 (239)
T KOG0858|consen 10 LQIPPVTRYYTTACVVTTLLVRLDLISPFQLYLNPELVFKKFQIWRLITSFLYFGPFGFDFLMNLYFLYRYSSMLEEGSF 89 (239)
T ss_pred hcCChHHHHHHHHHHHHHHHHhhcccCchheEecHHHHHhHhHHHHhhhhhheeccccHHHHHHHHHHHHHHHHHhcCCC
Confidence 34579999999999999888776544444444445566789999999999998876 5999999999999999999942
Q ss_pred --ChHHHHHHHHHHHHHHHHHHH
Q 021695 206 --GPRRYLGVYFSSAIASSAMSY 226 (309)
Q Consensus 206 --G~~~fl~lyl~sgi~g~l~s~ 226 (309)
.+.+|+.+.+.+++.-.+.++
T Consensus 90 ~~rtadf~~mllf~~~l~~~~~~ 112 (239)
T KOG0858|consen 90 RGRTADFLYMLLFGAVLLTLTGL 112 (239)
T ss_pred CCchhHHHHHHHHHHHHHHHHHH
Confidence 247888888888888776665
No 12
>KOG2890 consensus Predicted membrane protein [Function unknown]
Probab=97.07 E-value=0.0033 Score=59.26 Aligned_cols=86 Identities=20% Similarity=0.284 Sum_probs=69.5
Q ss_pred CCcchhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH--------hcC-----Cceec
Q 021695 169 GQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYR--------FCN-----SPAVG 235 (309)
Q Consensus 169 gq~WRLlTs~FlH~~~~HLl~Nm~~L~~~G~~lE~~~G~~~fl~lyl~sgi~g~l~s~l--------~~~-----~~~vG 235 (309)
...|+++|+.|+-.+++-.+.|.+.+.+-|..+|+.||...++..|.+.-..-+++... +.+ .+..|
T Consensus 65 ~~~WtliTs~fie~~vw~V~~sv~~L~v~G~~lEp~Wg~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~~~i~G 144 (326)
T KOG2890|consen 65 FFPWTLITSGFIELNVWDVLVSVLTLSVGGKFLEPNWGSLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLYIPIHG 144 (326)
T ss_pred hhhHHHHhcchhhhhHHHHHHHHHheeecceeeccCCCCHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEEEEecc
Confidence 47999999999999999999999999999999999999999988887654444433221 111 34779
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q 021695 236 ASGAIFGLVGSFAVFIMRH 254 (309)
Q Consensus 236 aSGaIfGLlga~~~~~~~~ 254 (309)
..|..-|++.++=-.+|+.
T Consensus 145 ~~gilaGilVa~kQllpd~ 163 (326)
T KOG2890|consen 145 TTGILAGILVAWKQLLPDT 163 (326)
T ss_pred chHHHHHHHHHHHHHcCce
Confidence 9999999999887776665
No 13
>COG5291 Predicted membrane protein [Function unknown]
Probab=96.49 E-value=0.006 Score=56.07 Aligned_cols=88 Identities=16% Similarity=0.175 Sum_probs=56.9
Q ss_pred chhHHHHHHHHHHHHHHHHHh---chHHHHHhhhchhhhhccCCcchhhhhhcccCC-HHHHHHHHHHHHHHHHHHHH-H
Q 021695 130 GRQWTNILLAVNVLVYIAQFA---TQDKLLLWGAKINSLIDKGQFWRLATSAFLHAN-IAHLMVNCYSLNSIGPTMEK-I 204 (309)
Q Consensus 130 ~~~~t~~LI~i~v~vfll~~~---~~~~l~~~g~~~~~~i~~gq~WRLlTs~FlH~~-~~HLl~Nm~~L~~~G~~lE~-~ 204 (309)
-||+|+.+..+..++-++... .+.... ...+-.+.+-|+||++|+..+-++ -.-.++|++.++-..+.+|+ .
T Consensus 19 IPPITRy~~ll~~a~til~~~~lvsPwy~l---y~~pL~~k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS~~LE~g~ 95 (313)
T COG5291 19 IPPITRYMTLLISAVTILVYVDLVSPWYSL---YYSPLFLKRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYSRMLEEGC 95 (313)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhcCcccee---eechhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHhccc
Confidence 467777766665555554333 221111 112334567799999998887765 48899999999999999999 4
Q ss_pred hChH--HHHHHHHHHHHH
Q 021695 205 CGPR--RYLGVYFSSAIA 220 (309)
Q Consensus 205 ~G~~--~fl~lyl~sgi~ 220 (309)
+++. +|..+.+...+.
T Consensus 96 f~~~lv~Y~~yl~~~~l~ 113 (313)
T COG5291 96 FNTSLVEYFWYLLVISLV 113 (313)
T ss_pred cCccHHHHHHHHHHHHHH
Confidence 5554 665544444433
No 14
>KOG4463 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.77 E-value=0.013 Score=54.39 Aligned_cols=95 Identities=20% Similarity=0.282 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhchHHHHHhhhchhhhh-ccCCcchhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhChHH
Q 021695 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRR 209 (309)
Q Consensus 131 ~~~t~~LI~i~v~vfll~~~~~~~l~~~g~~~~~~i-~~gq~WRLlTs~FlH~~~~HLl~Nm~~L~~~G~~lE~~~G~~~ 209 (309)
-|+|..+++-..++-+...... .--.++.++...+ .+.|+||++.+.|.-.+-.-+++-.+.++.+ +.+|+.+|+-|
T Consensus 11 mpVTK~~~iT~~~~~vvagI~~-~k~~f~l~y~~~l~~y~qywrlL~~qF~~~n~~e~~~~l~I~Y~f-R~~ERlLGShk 88 (323)
T KOG4463|consen 11 MPVTKAFVITSALFTVVAGIQG-RKSKFGLSYQDILEKYFQYWRLLMSQFAFSNTPELMFGLYILYYF-RVFERLLGSHK 88 (323)
T ss_pred cchHHHHHHHHHHHHHHHHhhh-cccccccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHHHhcccc
Confidence 4567766554444333222211 1112233333333 3489999999999999988888887777776 89999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021695 210 YLGVYFSSAIASSAMSYR 227 (309)
Q Consensus 210 fl~lyl~sgi~g~l~s~l 227 (309)
|..+.+.+++.+-++...
T Consensus 89 y~~fiv~s~~~~~l~~~i 106 (323)
T KOG4463|consen 89 YSVFIVFSGTVSLLLEVI 106 (323)
T ss_pred ceeehhHHHHHHHHHHHH
Confidence 999999999888876553
No 15
>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]
Probab=64.81 E-value=20 Score=32.03 Aligned_cols=78 Identities=22% Similarity=0.177 Sum_probs=57.0
Q ss_pred hhccCCcchhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCceechHHHHHHHH
Q 021695 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244 (309)
Q Consensus 165 ~i~~gq~WRLlTs~FlH~~~~HLl~Nm~~L~~~G~~lE~~~G~~~fl~lyl~sgi~g~l~s~l~~~~~~vGaSGaIfGLl 244 (309)
.-..|++++++++.++|....+...+... ..+...+++...++.+++.......+.++.++-+.|++
T Consensus 134 ~GASG~i~gllga~~~~~~~~~~~~~~~~-------------~~~~~~~~i~~~~~~~~~~~~~~~~~~va~~aHl~G~i 200 (228)
T COG0705 134 LGASGAIFGLLGAYFLLFPFARILLLFLS-------------LPRPALILILIWLLYSLFSGAGSFGPSVAWSAHLGGLI 200 (228)
T ss_pred cchhHHHHHHHHHHHHHccccchhhhhcc-------------CchhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 34678899999999999888887777654 33445667777777777776665556788999999999
Q ss_pred HHHHHHHHhhh
Q 021695 245 GSFAVFIMRHR 255 (309)
Q Consensus 245 ga~~~~~~~~~ 255 (309)
+.........+
T Consensus 201 ~G~l~~~~~~~ 211 (228)
T COG0705 201 GGLLLAALLSR 211 (228)
T ss_pred HHHHHHHHHhh
Confidence 87766554443
No 16
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=37.13 E-value=1.4e+02 Score=20.59 Aligned_cols=41 Identities=12% Similarity=0.033 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHH
Q 021695 186 HLMVNCYSLNSIGPTMEKICGP-RRYLGVYFSSAIASSAMSY 226 (309)
Q Consensus 186 HLl~Nm~~L~~~G~~lE~~~G~-~~fl~lyl~sgi~g~l~s~ 226 (309)
.+..+++.-..+|..+++.+++ ..+..+.++-|+.+++...
T Consensus 9 ~~~~~i~~g~~~G~~lD~~~~t~p~~~~~g~llG~~~g~~~~ 50 (55)
T PF09527_consen 9 TMAAPILVGFFLGYWLDKWFGTSPWFTLIGLLLGIAAGFYNV 50 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHH
Confidence 4566777788899999999998 5555566666666666543
No 17
>TIGR02854 spore_II_GA sigma-E processing peptidase SpoIIGA. Members of this protein family are the stage II sporulation protein SpoIIGA. This protein acts as an activating protease for Sigma-E, one of several specialized sigma factors of the sporulation process in Bacillus subtilis and related endospore-forming bacteria.
Probab=36.13 E-value=3.4e+02 Score=25.59 Aligned_cols=38 Identities=16% Similarity=0.254 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Q 021695 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSY 226 (309)
Q Consensus 185 ~HLl~Nm~~L~~~G~~lE~~~G~~~fl~lyl~sgi~g~l~s~ 226 (309)
..+++|.+.|+..+..+.+....+|.+ +++++|++.+.
T Consensus 11 ~Nf~~d~~LL~~t~~~lk~~~~~~Rll----~ga~iGa~~~~ 48 (288)
T TIGR02854 11 ENFIIDYFLLYLTARTLKDKVSQWRLL----LAALIGSLYVL 48 (288)
T ss_pred HHHHHHHHHHHHHHHHhhccchHHHHH----HHHHHHHHHHH
Confidence 567899999999999999988888854 45555555444
No 18
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=31.77 E-value=2.7e+02 Score=26.11 Aligned_cols=38 Identities=13% Similarity=0.188 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Q 021695 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSY 226 (309)
Q Consensus 185 ~HLl~Nm~~L~~~G~~lE~~~G~~~fl~lyl~sgi~g~l~s~ 226 (309)
..+++|.+.|+..+..+.+....+|.+ +++.+|++.++
T Consensus 11 ~N~~md~~lL~~t~~~~~~~~~~~Rll----~~A~~Gal~~~ 48 (293)
T PF03419_consen 11 VNFLMDYFLLWLTARLLKRRASRWRLL----LGAAIGALYSL 48 (293)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHH----HHHHHHHHHHH
Confidence 567889999999999999888888864 34555555443
No 19
>PF04892 VanZ: VanZ like family ; InterPro: IPR006976 This entry represents a conserved sequence region found in the VanZ protein and also several phosphotransbutyrylases. VanZ confers low-level resistance to the glycopeptide antibiotic teicoplanin (Te). Analysis of cytoplasmic peptidoglycan precursors, accumulated in the presence of ramoplanin, showed that VanZ-mediated Te resistance does not involve incorporation of a substituent of D-alanine into the peptidoglycan precursors [].
Probab=25.50 E-value=3.5e+02 Score=21.55 Aligned_cols=68 Identities=10% Similarity=0.066 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHH---HHhcC------CceechHHHHHHHHHHHHH
Q 021695 182 ANIAHLMVNCYSLNSIGPTMEKICGP-RRYLGVYFSSAIASSAMS---YRFCN------SPAVGASGAIFGLVGSFAV 249 (309)
Q Consensus 182 ~~~~HLl~Nm~~L~~~G~~lE~~~G~-~~fl~lyl~sgi~g~l~s---~l~~~------~~~vGaSGaIfGLlga~~~ 249 (309)
....+.+.|.+....+|..+...+.+ ++.......+.+.+.... +.... ....-.-|++.|...+...
T Consensus 49 ~~~~~~~~hi~~f~plG~l~~~~~~~~~~~~~~~~~~~~~sl~iE~~Q~~~~~r~~d~~Dv~~n~~G~~lG~~l~~~~ 126 (133)
T PF04892_consen 49 NAFIDKIGHILLFFPLGFLLPLLFRRLRSWLLAILIGFLFSLFIELIQLFLPGRSFDIDDVLANTLGALLGYLLYRLI 126 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999888887775 243434444444443333 22211 2234455666666544443
No 20
>PF14898 DUF4491: Domain of unknown function (DUF4491)
Probab=23.68 E-value=1.5e+02 Score=23.48 Aligned_cols=46 Identities=22% Similarity=0.252 Sum_probs=32.1
Q ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHhcCCceechHHHHHHHHHHHHHHH
Q 021695 201 MEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFI 251 (309)
Q Consensus 201 lE~~~G~~~fl~lyl~sgi~g~l~s~l~~~~~~vGaSGaIfGLlga~~~~~ 251 (309)
.|.++|+ +...+|++.|+.....|+...+. .. .++.|++|+.+...
T Consensus 26 ~EYyfg~-~~W~~FL~~Gi~~~~~Sl~~~~~---~~-S~llgv~g~s~lWs 71 (94)
T PF14898_consen 26 GEYYFGT-RIWPIFLLAGIACIIASLFVSNV---IW-SALLGVLGFSCLWS 71 (94)
T ss_pred EEEecCC-CcHHHHHHHHHHHHHHHHHHcch---HH-HHHHHHHHHHHHHh
Confidence 3788888 56778899999998888876532 22 34567777666544
Done!