Query 021695
Match_columns 309
No_of_seqs 266 out of 1377
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 07:56:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021695.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021695hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xov_A Rhomboid protease GLPG; 100.0 3.5E-30 1.2E-34 225.2 20.1 175 129-306 2-180 (181)
2 2nr9_A Protein GLPG homolog; i 100.0 4.5E-30 1.5E-34 227.3 13.5 171 128-302 6-181 (196)
3 2hfr_A Fowlicidin-3, cathelici 12.1 62 0.0021 18.5 0.5 20 23-42 7-26 (27)
4 3arc_J Photosystem II reaction 7.4 1.6E+02 0.0054 18.7 1.1 16 19-34 4-19 (40)
5 3vr8_C Cytochrome B-large subu 7.4 7.7E+02 0.026 20.6 5.9 20 172-191 122-143 (188)
6 2cxa_A Leucyl/phenylalanyl-tRN 6.2 89 0.003 28.0 -0.7 64 13-80 69-132 (256)
7 2wdq_C Succinate dehydrogenase 4.8 3.2E+02 0.011 21.1 1.9 18 174-191 77-96 (129)
8 2b9s_B DNA topoisomerase I-lik 4.5 1.1E+02 0.0038 21.3 -0.9 17 66-82 21-37 (62)
9 1col_A Colicin A; antibacteria 4.5 9E+02 0.031 20.6 4.6 6 233-238 171-176 (204)
10 3hr5_R M1prime-derived peptide 4.4 3E+02 0.01 16.4 1.0 10 5-14 24-33 (35)
No 1
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.97 E-value=3.5e-30 Score=225.21 Aligned_cols=175 Identities=21% Similarity=0.176 Sum_probs=135.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHhchH-HHHHhhhchhhhhccCCcchhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhCh
Q 021695 129 IGRQWTNILLAVNVLVYIAQFATQD-KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207 (309)
Q Consensus 129 ~~~~~t~~LI~i~v~vfll~~~~~~-~l~~~g~~~~~~i~~gq~WRLlTs~FlH~~~~HLl~Nm~~L~~~G~~lE~~~G~ 207 (309)
|.+|+|..++++|+++|+++...+. ....+....+..+.++|+||++|++|+|.|+.|+++||+.++.+|..+|+.+|+
T Consensus 2 ~~~pvt~~li~~~v~vf~~~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G~ 81 (181)
T 2xov_A 2 RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGS 81 (181)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSGGGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCcHHHHHhhcCChhhccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 4568999999999999999876543 334444444545678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceechHHHHHHHHHHHHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhc---cCC
Q 021695 208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAA---FAN 284 (309)
Q Consensus 208 ~~fl~lyl~sgi~g~l~s~l~~~~~~vGaSGaIfGLlga~~~~~~~~~~~~~~~~~~~~~i~~~l~l~lv~~ll---~~~ 284 (309)
+||+.+|+.+++.+++.++++.+..++|+||++||++++..+....+++.....+... ....++++++++. .++
T Consensus 82 ~~fl~~yl~~~i~~~l~~~~~~~~~~vGaSGai~gl~g~~~~~~~~~p~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~ 158 (181)
T 2xov_A 82 GKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGL---IIFALIWIVAGWFDLFGMS 158 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHHCGGGSCCCCHHH---HHHHHHHHHHHHTTSSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHHHhhCcCceeeeHHHH---HHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999887666999999999999987654333332211112221 1222333444443 368
Q ss_pred hhHHHHHHHHHHHHHHHHccCC
Q 021695 285 IVKIESRHTLTGETCYFIDPSK 306 (309)
Q Consensus 285 v~~~aHLgG~l~G~~~~l~~~~ 306 (309)
+|++||++|+++|+++.+..+|
T Consensus 159 v~~~aHlgG~l~G~l~~~~~~~ 180 (181)
T 2xov_A 159 MANGAHIAGLAVGLAMAFVDSL 180 (181)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999988765443
No 2
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=99.97 E-value=4.5e-30 Score=227.28 Aligned_cols=171 Identities=15% Similarity=0.191 Sum_probs=131.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhchH-HHHHhhhchhhhhccCCcchhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhC
Q 021695 128 FIGRQWTNILLAVNVLVYIAQFATQD-KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICG 206 (309)
Q Consensus 128 ~~~~~~t~~LI~i~v~vfll~~~~~~-~l~~~g~~~~~~i~~gq~WRLlTs~FlH~~~~HLl~Nm~~L~~~G~~lE~~~G 206 (309)
.+++|+|..++++|+++|+++...+. ....+....+..+.++|+||++|++|+|.|+.|+++||+.++.+|..+|+.+|
T Consensus 6 ~~~~pvt~~li~~~v~vfll~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~G 85 (196)
T 2nr9_A 6 AQQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFG 85 (196)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccHHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCHhhcccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 34578999999999999999877643 33444444454567899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCceechHHHHHHHHHHHHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhc----c
Q 021695 207 PRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMVCSAA----F 282 (309)
Q Consensus 207 ~~~fl~lyl~sgi~g~l~s~l~~~~~~vGaSGaIfGLlga~~~~~~~~~~~~~~~~~~~~~i~~~l~l~lv~~ll----~ 282 (309)
+++++.+|+.+++.+++.++++.+..++||||+|||++++.++....+++.+ ..+.... ..+++++++++. .
T Consensus 86 ~~~~l~~yl~~~~~~~l~~~~~~~~~~vGaSGai~gl~g~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~ 161 (196)
T 2nr9_A 86 SVKLLMLYVVASAITGYVQNYVSGPAFFGLSGVVYAVLGYVFIRDKLNHHLF-DLPEGFF---TMLLVGIALGFISPLFG 161 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHSSTTSC-CCCCSST---TTTTTTTTHHHHSCSSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCeeeHHHHHHHHHHHHHHHHHhcchhh-cchHHHH---HHHHHHHHHHHHHhccC
Confidence 9999999999999999999988766699999999999997765433333221 1111111 111112223333 3
Q ss_pred CChhHHHHHHHHHHHHHHHH
Q 021695 283 ANIVKIESRHTLTGETCYFI 302 (309)
Q Consensus 283 ~~v~~~aHLgG~l~G~~~~l 302 (309)
+++|++||++|+++|+++.+
T Consensus 162 ~~v~~~aHlgG~l~G~l~~~ 181 (196)
T 2nr9_A 162 VEMGNAAHISGLIVGLIWGF 181 (196)
T ss_dssp CTTCHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHH
Confidence 48999999999999987654
No 3
>2hfr_A Fowlicidin-3, cathelicidin; alpha helix, antimicrobial protein; NMR {Synthetic}
Probab=12.05 E-value=62 Score=18.47 Aligned_cols=20 Identities=25% Similarity=0.321 Sum_probs=16.0
Q ss_pred CcchhhhhhhhcchhhhhHh
Q 021695 23 PPLNLITTTAKHSLSVSLSR 42 (309)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~ 42 (309)
.|..+.+++|+..+-.+.||
T Consensus 7 vpvaintvaaginlykairr 26 (27)
T 2hfr_A 7 VPVAINTVAAGINLYKAIRR 26 (27)
T ss_dssp SSSHHHHHHHHHTSTTTTTC
T ss_pred CcceEEEeehhhhHHHHHhc
Confidence 46778888999988888776
No 4
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=7.42 E-value=1.6e+02 Score=18.72 Aligned_cols=16 Identities=31% Similarity=0.196 Sum_probs=13.0
Q ss_pred ccCCCcchhhhhhhhc
Q 021695 19 WLTRPPLNLITTTAKH 34 (309)
Q Consensus 19 ~~~~~~~~~~~~~~~~ 34 (309)
..++-|+-+|+|+++.
T Consensus 4 ~tGRiPLWlvgtv~G~ 19 (40)
T 3arc_J 4 EGGRIPLWIVATVAGM 19 (40)
T ss_dssp CTTSSCHHHHHHHHHH
T ss_pred CcCcccEEeeeeehhh
Confidence 3578899999999886
No 5
>3vr8_C Cytochrome B-large subunit; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_C*
Probab=7.38 E-value=7.7e+02 Score=20.65 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=13.6
Q ss_pred chhhhhhccc--CCHHHHHHHH
Q 021695 172 WRLATSAFLH--ANIAHLMVNC 191 (309)
Q Consensus 172 WRLlTs~FlH--~~~~HLl~Nm 191 (309)
|-+..+.+.| .|+-|++..+
T Consensus 122 ~~l~~a~~yH~~nGIRHLiwD~ 143 (188)
T 3vr8_C 122 FIIAFPIAFHTLNGIRFIGFDM 143 (188)
T ss_pred HHHHHHHHHHHHhhHHHHHHHh
Confidence 4455566667 5889988775
No 6
>2cxa_A Leucyl/phenylalanyl-tRNA-protein transferase; aminoacyl-tRNA, protein degradation, structural genomics, NPPSFA; HET: MSE; 1.60A {Escherichia coli} SCOP: d.108.1.6 PDB: 2dps_A 2dpt_A* 2z3o_A* 2z3k_A* 2z3l_A* 2z3m_A* 2z3n_A* 2z3p_A*
Probab=6.22 E-value=89 Score=27.97 Aligned_cols=64 Identities=16% Similarity=0.272 Sum_probs=39.6
Q ss_pred CCCCccccCCCcchhhhhhhhcchhhhhHhhhhccCccchhhhhccccccccccCCCCccchhhhccc
Q 021695 13 HREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENA 80 (309)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (309)
+.+|+.|..|.|=-++-. ..+|.+|++||.+.... ...-+-..|.+|-+-|..||-.+.|+...
T Consensus 69 ~~~pilWwsP~pR~Vl~p-~~~hisrSLrk~lr~~~---f~vt~n~aF~~VI~~Ca~~R~~gTWI~~e 132 (256)
T 2cxa_A 69 PGDPILWWSPDPRAVLWP-ESLHISRSMKRFHKRSP---YRVTMNYAFGQVIEGCASDREEGTWITRG 132 (256)
T ss_dssp TTSCCEEECCSSEEEECG-GGCCCCHHHHHHHHTCC---CEEEESSCHHHHHHHHHTC---CTTCCHH
T ss_pred CCCccceECCCCCEEecc-ccccCCHHHHHHHCCCC---eEEEEcCcHHHHHHHhcCCCCCCCCCCHH
Confidence 347888888888777765 68999999999753211 11223345556655555566455886543
No 7
>2wdq_C Succinate dehydrogenase cytochrome B556 subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_C* 2acz_C* 1nek_C* 2wdr_C* 2wdv_C* 2wp9_C* 2ws3_C* 2wu5_C* 2wu2_C*
Probab=4.80 E-value=3.2e+02 Score=21.09 Aligned_cols=18 Identities=28% Similarity=0.514 Sum_probs=10.6
Q ss_pred hhhhhcccC--CHHHHHHHH
Q 021695 174 LATSAFLHA--NIAHLMVNC 191 (309)
Q Consensus 174 LlTs~FlH~--~~~HLl~Nm 191 (309)
++.+.+.|. |+.|++..+
T Consensus 77 ~~~a~~yH~~nGiRhl~~D~ 96 (129)
T 2wdq_C 77 ILTALAYHVVVGIRHMMMDF 96 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhHHHHHhhc
Confidence 445555663 677776554
No 8
>2b9s_B DNA topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani}
Probab=4.53 E-value=1.1e+02 Score=21.34 Aligned_cols=17 Identities=18% Similarity=0.186 Sum_probs=14.2
Q ss_pred cCCCCccchhhhccccc
Q 021695 66 LCHIPRLKDQWCENAFR 82 (309)
Q Consensus 66 ~~~~~~~~~~~~~~~~~ 82 (309)
+|-.|||.-+||.++..
T Consensus 21 NYlDPRItvaWcKr~~V 37 (62)
T 2b9s_B 21 NYIDPRIICSWAKAQDV 37 (62)
T ss_dssp HTSCHHHHHHHHHHTTC
T ss_pred hccCchhhhhhhhhcCC
Confidence 47789999999988764
No 9
>1col_A Colicin A; antibacterial protein; 2.40A {Escherichia coli} SCOP: f.1.1.1
Probab=4.48 E-value=9e+02 Score=20.64 Aligned_cols=6 Identities=67% Similarity=1.071 Sum_probs=2.6
Q ss_pred eechHH
Q 021695 233 AVGASG 238 (309)
Q Consensus 233 ~vGaSG 238 (309)
.+|.-|
T Consensus 171 ~~Gi~g 176 (204)
T 1col_A 171 AVGIAG 176 (204)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344444
No 10
>3hr5_R M1prime-derived peptide; FAB-peptide complex, immune system; 2.40A {Mus musculus}
Probab=4.41 E-value=3e+02 Score=16.36 Aligned_cols=10 Identities=50% Similarity=0.973 Sum_probs=7.3
Q ss_pred cCCCCCCCCC
Q 021695 5 ASGRALPHHR 14 (309)
Q Consensus 5 ~~~~~~~~~~ 14 (309)
|.|-++|+|+
T Consensus 24 aaggsvphpr 33 (35)
T 3hr5_R 24 AAGGSVPHPR 33 (35)
T ss_pred ccCCCCCCCC
Confidence 5677888875
Done!